##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM474495v1
#!genome-build-accession NCBI_Assembly:GCF_004744955.1
#!annotation-date 06/11/2025 09:19:09
#!annotation-source NCBI RefSeq GCF_004744955.1-RS_2025_06_11
##sequence-region NZ_PYJX01000139.1 1 16023
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000139.1	RefSeq	region	1	16023	.	+	.	ID=NZ_PYJX01000139.1:1..16023;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000139.1	RefSeq	gene	1	589	.	-	.	ID=gene-C9E96_RS12145;Name=uhpA;gbkey=Gene;gene=uhpA;gene_biotype=protein_coding;locus_tag=C9E96_RS12145;old_locus_tag=C9E96_12450;partial=true;start_range=.,1
NZ_PYJX01000139.1	Protein Homology	CDS	1	589	.	-	0	ID=cds-WP_135494241.1;Parent=gene-C9E96_RS12145;Dbxref=GenBank:WP_135494241.1;Name=WP_135494241.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=uhpA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462689.1;locus_tag=C9E96_RS12145;partial=true;product=transcriptional regulator UhpA;protein_id=WP_135494241.1;start_range=.,1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	664	1677	.	-	.	ID=gene-C9E96_RS12150;Name=C9E96_RS12150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12150;old_locus_tag=C9E96_12455
NZ_PYJX01000139.1	Protein Homology	CDS	664	1677	.	-	0	ID=cds-WP_000213210.1;Parent=gene-C9E96_RS12150;Dbxref=GenBank:WP_000213210.1;Name=WP_000213210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462690.1;locus_tag=C9E96_RS12150;product=aldose 1-epimerase family protein;protein_id=WP_000213210.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	1689	3005	.	-	.	ID=gene-C9E96_RS12155;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=C9E96_RS12155;old_locus_tag=C9E96_12460
NZ_PYJX01000139.1	Protein Homology	CDS	1689	3005	.	-	0	ID=cds-WP_000998358.1;Parent=gene-C9E96_RS12155;Dbxref=GenBank:WP_000998358.1;Name=WP_000998358.1;Ontology_term=GO:0015756,GO:0015150,GO:0015535;gbkey=CDS;gene=fucP;go_function=fucose transmembrane transporter activity|0015150||IEA,fucose:proton symporter activity|0015535||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462691.1;locus_tag=C9E96_RS12155;product=L-fucose:H+ symporter permease;protein_id=WP_000998358.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	3036	3956	.	-	.	ID=gene-C9E96_RS12160;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=protein_coding;locus_tag=C9E96_RS12160;old_locus_tag=C9E96_12465
NZ_PYJX01000139.1	Protein Homology	CDS	3036	3956	.	-	0	ID=cds-WP_000350272.1;Parent=gene-C9E96_RS12160;Dbxref=GenBank:WP_000350272.1;Name=WP_000350272.1;Ontology_term=GO:0006014,GO:0004747;gbkey=CDS;gene=rbsK;go_function=ribokinase activity|0004747||IEA;go_process=D-ribose metabolic process|0006014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462692.1;locus_tag=C9E96_RS12160;product=ribokinase;protein_id=WP_000350272.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	4270	5055	.	+	.	ID=gene-C9E96_RS12165;Name=C9E96_RS12165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12165;old_locus_tag=C9E96_12470
NZ_PYJX01000139.1	Protein Homology	CDS	4270	5055	.	+	0	ID=cds-WP_135494243.1;Parent=gene-C9E96_RS12165;Dbxref=GenBank:WP_135494243.1;Name=WP_135494243.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462693.1;locus_tag=C9E96_RS12165;product=DeoR family transcriptional regulator;protein_id=WP_135494243.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	5057	5347	.	-	.	ID=gene-C9E96_RS12170;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=C9E96_RS12170;old_locus_tag=C9E96_12475
NZ_PYJX01000139.1	Protein Homology	CDS	5057	5347	.	-	0	ID=cds-WP_001171826.1;Parent=gene-C9E96_RS12170;Dbxref=GenBank:WP_001171826.1;Name=WP_001171826.1;gbkey=CDS;gene=ilvN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462694.1;locus_tag=C9E96_RS12170;product=acetolactate synthase small subunit;protein_id=WP_001171826.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	5351	7039	.	-	.	ID=gene-C9E96_RS12175;Name=ilvB;gbkey=Gene;gene=ilvB;gene_biotype=protein_coding;locus_tag=C9E96_RS12175;old_locus_tag=C9E96_12480
NZ_PYJX01000139.1	Protein Homology	CDS	5351	7039	.	-	0	ID=cds-WP_000168439.1;Parent=gene-C9E96_RS12175;Dbxref=GenBank:WP_000168439.1;Name=WP_000168439.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvB;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462695.1;locus_tag=C9E96_RS12175;product=acetolactate synthase large subunit;protein_id=WP_000168439.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	7146	7244	.	-	.	ID=gene-C9E96_RS12180;Name=ivbL;gbkey=Gene;gene=ivbL;gene_biotype=protein_coding;locus_tag=C9E96_RS12180;old_locus_tag=C9E96_12485
NZ_PYJX01000139.1	Protein Homology	CDS	7146	7244	.	-	0	ID=cds-WP_001541152.1;Parent=gene-C9E96_RS12180;Dbxref=GenBank:WP_001541152.1;Name=WP_001541152.1;gbkey=CDS;gene=ivbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462696.1;locus_tag=C9E96_RS12180;product=ilvB operon leader peptide IvbL;protein_id=WP_001541152.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	pseudogene	7767	7881	.	+	.	ID=gene-C9E96_RS12185;Name=C9E96_RS12185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS12185;old_locus_tag=C9E96_12490;pseudo=true
NZ_PYJX01000139.1	Protein Homology	CDS	7767	7881	.	+	0	ID=cds-C9E96_RS12185;Parent=gene-C9E96_RS12185;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009325922.1;locus_tag=C9E96_RS12185;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	7878	7967	.	+	.	ID=gene-C9E96_RS12190;Name=tisB;gbkey=Gene;gene=tisB;gene_biotype=protein_coding;locus_tag=C9E96_RS12190;old_locus_tag=C9E96_12495
NZ_PYJX01000139.1	Protein Homology	CDS	7878	7967	.	+	0	ID=cds-WP_000117642.1;Parent=gene-C9E96_RS12190;Dbxref=GenBank:WP_000117642.1;Name=WP_000117642.1;gbkey=CDS;gene=tisB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453107.1;locus_tag=C9E96_RS12190;product=type I toxin-antitoxin system toxin TisB;protein_id=WP_000117642.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	8060	8920	.	+	.	ID=gene-C9E96_RS12195;Name=C9E96_RS12195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12195;old_locus_tag=C9E96_12500
NZ_PYJX01000139.1	Protein Homology	CDS	8060	8920	.	+	0	ID=cds-WP_001531658.1;Parent=gene-C9E96_RS12195;Dbxref=GenBank:WP_001531658.1;Name=WP_001531658.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462698.3;locus_tag=C9E96_RS12195;product=DMT family transporter;protein_id=WP_001531658.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	9123	10307	.	+	.	ID=gene-C9E96_RS12200;Name=emrD;gbkey=Gene;gene=emrD;gene_biotype=protein_coding;locus_tag=C9E96_RS12200;old_locus_tag=C9E96_12505
NZ_PYJX01000139.1	Protein Homology	CDS	9123	10307	.	+	0	ID=cds-WP_000828737.1;Parent=gene-C9E96_RS12200;Dbxref=GenBank:WP_000828737.1;Name=WP_000828737.1;gbkey=CDS;gene=emrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462699.1;locus_tag=C9E96_RS12200;product=multidrug efflux MFS transporter EmrD;protein_id=WP_000828737.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	10234	11319	.	-	.	ID=gene-C9E96_RS12205;Name=C9E96_RS12205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12205;old_locus_tag=C9E96_12510
NZ_PYJX01000139.1	Protein Homology	CDS	10234	11319	.	-	0	ID=cds-WP_000238928.1;Parent=gene-C9E96_RS12205;Dbxref=GenBank:WP_000238928.1;Name=WP_000238928.1;Ontology_term=GO:0000272,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462700.1;locus_tag=C9E96_RS12205;product=cellulase family glycosylhydrolase;protein_id=WP_000238928.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	11383	12306	.	-	.	ID=gene-C9E96_RS12210;Name=dsdC;gbkey=Gene;gene=dsdC;gene_biotype=protein_coding;locus_tag=C9E96_RS12210;old_locus_tag=C9E96_12515
NZ_PYJX01000139.1	Protein Homology	CDS	11383	12306	.	-	0	ID=cds-WP_001522218.1;Parent=gene-C9E96_RS12210;Dbxref=GenBank:WP_001522218.1;Name=WP_001522218.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=dsdC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462701.1;locus_tag=C9E96_RS12210;product=DNA-binding transcriptional regulator DsdC;protein_id=WP_001522218.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	12532	13869	.	+	.	ID=gene-C9E96_RS12215;Name=dsdX;gbkey=Gene;gene=dsdX;gene_biotype=protein_coding;locus_tag=C9E96_RS12215;old_locus_tag=C9E96_12520
NZ_PYJX01000139.1	Protein Homology	CDS	12532	13869	.	+	0	ID=cds-WP_135369876.1;Parent=gene-C9E96_RS12215;Dbxref=GenBank:WP_135369876.1;Name=WP_135369876.1;Ontology_term=GO:0035429,GO:0015128,GO:0016020;gbkey=CDS;gene=dsdX;go_component=membrane|0016020||IEA;go_function=gluconate transmembrane transporter activity|0015128||IEA;go_process=gluconate transmembrane transport|0035429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462702.1;locus_tag=C9E96_RS12215;product=D-serine transporter DsdX;protein_id=WP_135369876.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	13887	15209	.	+	.	ID=gene-C9E96_RS12220;Name=dsdA;gbkey=Gene;gene=dsdA;gene_biotype=protein_coding;locus_tag=C9E96_RS12220;old_locus_tag=C9E96_12525
NZ_PYJX01000139.1	Protein Homology	CDS	13887	15209	.	+	0	ID=cds-WP_000427993.1;Parent=gene-C9E96_RS12220;Dbxref=GenBank:WP_000427993.1;Name=WP_000427993.1;Ontology_term=GO:0046416,GO:0008721,GO:0030170;gbkey=CDS;gene=dsdA;go_function=D-serine ammonia-lyase activity|0008721||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=D-amino acid metabolic process|0046416||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462703.1;locus_tag=C9E96_RS12220;product=D-serine ammonia-lyase;protein_id=WP_000427993.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	gene	15291	15821	.	-	.	ID=gene-C9E96_RS12225;Name=C9E96_RS12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12225;old_locus_tag=C9E96_12530
NZ_PYJX01000139.1	Protein Homology	CDS	15291	15821	.	-	0	ID=cds-WP_017442041.1;Parent=gene-C9E96_RS12225;Dbxref=GenBank:WP_017442041.1;Name=WP_017442041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462704.1;locus_tag=C9E96_RS12225;product=radical SAM protein;protein_id=WP_017442041.1;transl_table=11
NZ_PYJX01000139.1	RefSeq	pseudogene	15818	16023	.	-	.	ID=gene-C9E96_RS12230;Name=C9E96_RS12230;end_range=16023,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS12230;old_locus_tag=C9E96_12535;partial=true;pseudo=true
NZ_PYJX01000139.1	Protein Homology	CDS	15818	16023	.	-	2	ID=cds-C9E96_RS12230;Parent=gene-C9E96_RS12230;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=16023,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462705.1;locus_tag=C9E96_RS12230;partial=true;product=DUF202 domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000045.1 1 15745
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000045.1	RefSeq	region	1	15745	.	+	.	ID=NZ_PYJX01000045.1:1..15745;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000045.1	RefSeq	gene	127	279	.	-	.	ID=gene-C9E96_RS23915;Name=C9E96_RS23915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23915
NZ_PYJX01000045.1	GeneMarkS-2+	CDS	127	279	.	-	0	ID=cds-WP_000795911.1;Parent=gene-C9E96_RS23915;Dbxref=GenBank:WP_000795911.1;Name=WP_000795911.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS23915;product=hypothetical protein;protein_id=WP_000795911.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	393	947	.	+	.	ID=gene-C9E96_RS03415;Name=C9E96_RS03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03415;old_locus_tag=C9E96_03470
NZ_PYJX01000045.1	Protein Homology	CDS	393	947	.	+	0	ID=cds-WP_023994024.1;Parent=gene-C9E96_RS03415;Dbxref=GenBank:WP_023994024.1;Name=WP_023994024.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462303.1;locus_tag=C9E96_RS03415;product=gamma carbonic anhydrase family protein;protein_id=WP_023994024.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	923	1180	.	-	.	ID=gene-C9E96_RS03420;Name=C9E96_RS03420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03420;old_locus_tag=C9E96_03475
NZ_PYJX01000045.1	Protein Homology	CDS	923	1180	.	-	0	ID=cds-WP_001070575.1;Parent=gene-C9E96_RS03420;Dbxref=GenBank:WP_001070575.1;Name=WP_001070575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462304.1;locus_tag=C9E96_RS03420;product=DUF1488 domain-containing protein;protein_id=WP_001070575.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	1177	1995	.	-	.	ID=gene-C9E96_RS03425;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=C9E96_RS03425;old_locus_tag=C9E96_03480
NZ_PYJX01000045.1	Protein Homology	CDS	1177	1995	.	-	0	ID=cds-WP_023994025.1;Parent=gene-C9E96_RS03425;Dbxref=GenBank:WP_023994025.1;Name=WP_023994025.1;Ontology_term=GO:0019632,GO:0004764;gbkey=CDS;gene=aroE;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;go_process=shikimate metabolic process|0019632||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462305.1;locus_tag=C9E96_RS03425;product=shikimate dehydrogenase;protein_id=WP_023994025.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	2000	2572	.	-	.	ID=gene-C9E96_RS03430;Name=tsaC;gbkey=Gene;gene=tsaC;gene_biotype=protein_coding;locus_tag=C9E96_RS03430;old_locus_tag=C9E96_03485
NZ_PYJX01000045.1	Protein Homology	CDS	2000	2572	.	-	0	ID=cds-WP_001063613.1;Parent=gene-C9E96_RS03430;Dbxref=GenBank:WP_001063613.1;Name=WP_001063613.1;Ontology_term=GO:0002949,GO:0003725,GO:0005524;gbkey=CDS;gene=tsaC;go_function=double-stranded RNA binding|0003725||IEA,ATP binding|0005524||IEA;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462306.1;locus_tag=C9E96_RS03430;product=L-threonylcarbamoyladenylate synthase type 1 TsaC;protein_id=WP_001063613.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	2577	3119	.	-	.	ID=gene-C9E96_RS03435;Name=C9E96_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03435;old_locus_tag=C9E96_03490
NZ_PYJX01000045.1	Protein Homology	CDS	2577	3119	.	-	0	ID=cds-WP_001129708.1;Parent=gene-C9E96_RS03435;Dbxref=GenBank:WP_001129708.1;Name=WP_001129708.1;Ontology_term=GO:0006265,GO:0003677,GO:0003916,GO:0005694;gbkey=CDS;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462307.1;locus_tag=C9E96_RS03435;product=DNA topoisomerase family protein;protein_id=WP_001129708.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	3146	3619	.	-	.	ID=gene-C9E96_RS03440;Name=smg;gbkey=Gene;gene=smg;gene_biotype=protein_coding;locus_tag=C9E96_RS03440;old_locus_tag=C9E96_03495
NZ_PYJX01000045.1	Protein Homology	CDS	3146	3619	.	-	0	ID=cds-WP_135369870.1;Parent=gene-C9E96_RS03440;Dbxref=GenBank:WP_135369870.1;Name=WP_135369870.1;gbkey=CDS;gene=smg;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134083.1;locus_tag=C9E96_RS03440;product=DUF494 family protein Smg;protein_id=WP_135369870.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	3591	4715	.	-	.	ID=gene-C9E96_RS03445;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=protein_coding;locus_tag=C9E96_RS03445;old_locus_tag=C9E96_03500
NZ_PYJX01000045.1	Protein Homology	CDS	3591	4715	.	-	0	ID=cds-WP_023994026.1;Parent=gene-C9E96_RS03445;Dbxref=GenBank:WP_023994026.1;Name=WP_023994026.1;Ontology_term=GO:0009294;gbkey=CDS;gene=dprA;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462309.1;locus_tag=C9E96_RS03445;product=DNA-protecting protein DprA;protein_id=WP_023994026.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	4847	5356	.	+	.	ID=gene-C9E96_RS03450;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=C9E96_RS03450;old_locus_tag=C9E96_03505
NZ_PYJX01000045.1	Protein Homology	CDS	4847	5356	.	+	0	ID=cds-WP_000114987.1;Parent=gene-C9E96_RS03450;Dbxref=GenBank:WP_000114987.1;Name=WP_000114987.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462310.1;locus_tag=C9E96_RS03450;product=peptide deformylase;protein_id=WP_000114987.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	5372	6319	.	+	.	ID=gene-C9E96_RS03455;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=C9E96_RS03455;old_locus_tag=C9E96_03510
NZ_PYJX01000045.1	Protein Homology	CDS	5372	6319	.	+	0	ID=cds-WP_001285174.1;Parent=gene-C9E96_RS03455;Dbxref=GenBank:WP_001285174.1;Name=WP_001285174.1;Ontology_term=GO:0071951,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=conversion of methionyl-tRNA to N-formyl-methionyl-tRNA|0071951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462311.1;locus_tag=C9E96_RS03455;product=methionyl-tRNA formyltransferase;protein_id=WP_001285174.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	6371	7660	.	+	.	ID=gene-C9E96_RS03460;Name=rsmB;gbkey=Gene;gene=rsmB;gene_biotype=protein_coding;locus_tag=C9E96_RS03460;old_locus_tag=C9E96_03515
NZ_PYJX01000045.1	Protein Homology	CDS	6371	7660	.	+	0	ID=cds-WP_023994027.1;Parent=gene-C9E96_RS03460;Dbxref=GenBank:WP_023994027.1;Name=WP_023994027.1;Ontology_term=GO:0001510,GO:0006355,GO:0006364,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmB;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA,regulation of DNA-templated transcription|0006355||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462312.1;locus_tag=C9E96_RS03460;product=16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;protein_id=WP_023994027.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	7682	9058	.	+	.	ID=gene-C9E96_RS03465;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;locus_tag=C9E96_RS03465;old_locus_tag=C9E96_03520
NZ_PYJX01000045.1	Protein Homology	CDS	7682	9058	.	+	0	ID=cds-WP_000691374.1;Parent=gene-C9E96_RS03465;Dbxref=GenBank:WP_000691374.1;Name=WP_000691374.1;Ontology_term=GO:0006813,GO:0015079,GO:0016020;gbkey=CDS;gene=trkA;go_component=membrane|0016020||IEA;go_function=potassium ion transmembrane transporter activity|0015079||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004125888.1;locus_tag=C9E96_RS03465;product=Trk system potassium transporter TrkA;protein_id=WP_000691374.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	9200	9613	.	+	.	ID=gene-C9E96_RS03470;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=C9E96_RS03470;old_locus_tag=C9E96_03525
NZ_PYJX01000045.1	Protein Homology	CDS	9200	9613	.	+	0	ID=cds-WP_000008119.1;Parent=gene-C9E96_RS03470;Dbxref=GenBank:WP_000008119.1;Name=WP_000008119.1;gbkey=CDS;gene=mscL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462314.1;locus_tag=C9E96_RS03470;product=large-conductance mechanosensitive channel protein MscL;protein_id=WP_000008119.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	pseudogene	9615	9818	.	-	.	ID=gene-C9E96_RS03475;Name=C9E96_RS03475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS03475;old_locus_tag=C9E96_03530;partial=true;pseudo=true;start_range=.,9615
NZ_PYJX01000045.1	Protein Homology	CDS	9615	9818	.	-	0	ID=cds-C9E96_RS03475;Parent=gene-C9E96_RS03475;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588467.1;locus_tag=C9E96_RS03475;partial=true;product=alternative ribosome-rescue factor A;pseudo=true;start_range=.,9615;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	9876	10301	.	-	.	ID=gene-C9E96_RS03480;Name=zntR;gbkey=Gene;gene=zntR;gene_biotype=protein_coding;locus_tag=C9E96_RS03480;old_locus_tag=C9E96_03535
NZ_PYJX01000045.1	Protein Homology	CDS	9876	10301	.	-	0	ID=cds-WP_000285588.1;Parent=gene-C9E96_RS03480;Dbxref=GenBank:WP_000285588.1;Name=WP_000285588.1;Ontology_term=GO:0006355,GO:0003677,GO:0008270;gbkey=CDS;gene=zntR;go_function=DNA binding|0003677||IEA,zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462316.1;locus_tag=C9E96_RS03480;product=Zn(2+)-responsive transcriptional regulator;protein_id=WP_000285588.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	10312	10680	.	-	.	ID=gene-C9E96_RS03485;Name=C9E96_RS03485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03485;old_locus_tag=C9E96_03540
NZ_PYJX01000045.1	Protein Homology	CDS	10312	10680	.	-	0	ID=cds-WP_080204123.1;Parent=gene-C9E96_RS03485;Dbxref=GenBank:WP_080204123.1;Name=WP_080204123.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462317.1;locus_tag=C9E96_RS03485;product=DUF1992 domain-containing protein;protein_id=WP_080204123.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	10788	11171	.	-	.	ID=gene-C9E96_RS03490;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=C9E96_RS03490;old_locus_tag=C9E96_03545
NZ_PYJX01000045.1	Protein Homology	CDS	10788	11171	.	-	0	ID=cds-WP_001216370.1;Parent=gene-C9E96_RS03490;Dbxref=GenBank:WP_001216370.1;Name=WP_001216370.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462318.1;locus_tag=C9E96_RS03490;product=50S ribosomal protein L17;protein_id=WP_001216370.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	11212	12201	.	-	.	ID=gene-C9E96_RS03495;Name=C9E96_RS03495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03495;old_locus_tag=C9E96_03550
NZ_PYJX01000045.1	Protein Homology	CDS	11212	12201	.	-	0	ID=cds-WP_001162094.1;Parent=gene-C9E96_RS03495;Dbxref=GenBank:WP_001162094.1;Name=WP_001162094.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005970247.1;locus_tag=C9E96_RS03495;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_001162094.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	12227	12847	.	-	.	ID=gene-C9E96_RS03500;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=C9E96_RS03500;old_locus_tag=C9E96_03555
NZ_PYJX01000045.1	Protein Homology	CDS	12227	12847	.	-	0	ID=cds-WP_000135226.1;Parent=gene-C9E96_RS03500;Dbxref=GenBank:WP_000135226.1;Name=WP_000135226.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004410410.1;locus_tag=C9E96_RS03500;product=30S ribosomal protein S4;protein_id=WP_000135226.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	12881	13270	.	-	.	ID=gene-C9E96_RS03505;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=C9E96_RS03505;old_locus_tag=C9E96_03560
NZ_PYJX01000045.1	Protein Homology	CDS	12881	13270	.	-	0	ID=cds-WP_001029758.1;Parent=gene-C9E96_RS03505;Dbxref=GenBank:WP_001029758.1;Name=WP_001029758.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001029758.1;locus_tag=C9E96_RS03505;product=30S ribosomal protein S11;protein_id=WP_001029758.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	13287	13643	.	-	.	ID=gene-C9E96_RS03510;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=C9E96_RS03510;old_locus_tag=C9E96_03565
NZ_PYJX01000045.1	Protein Homology	CDS	13287	13643	.	-	0	ID=cds-WP_000090780.1;Parent=gene-C9E96_RS03510;Dbxref=GenBank:WP_000090780.1;Name=WP_000090780.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsM;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019935869.1;locus_tag=C9E96_RS03510;product=30S ribosomal protein S13;protein_id=WP_000090780.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	13790	13906	.	-	.	ID=gene-C9E96_RS03515;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=C9E96_RS03515;old_locus_tag=C9E96_03570
NZ_PYJX01000045.1	Protein Homology	CDS	13790	13906	.	-	0	ID=cds-WP_000868187.1;Parent=gene-C9E96_RS03515;Dbxref=GenBank:WP_000868187.1;Name=WP_000868187.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmJ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020322760.1;locus_tag=C9E96_RS03515;product=50S ribosomal protein L36;protein_id=WP_000868187.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	13938	15269	.	-	.	ID=gene-C9E96_RS03520;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=C9E96_RS03520;old_locus_tag=C9E96_03575
NZ_PYJX01000045.1	Protein Homology	CDS	13938	15269	.	-	0	ID=cds-WP_001118864.1;Parent=gene-C9E96_RS03520;Dbxref=GenBank:WP_001118864.1;Name=WP_001118864.1;Ontology_term=GO:0015031,GO:0043952,GO:0016020;gbkey=CDS;gene=secY;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004868351.1;locus_tag=C9E96_RS03520;product=preprotein translocase subunit SecY;protein_id=WP_001118864.1;transl_table=11
NZ_PYJX01000045.1	RefSeq	gene	15277	15702	.	-	.	ID=gene-C9E96_RS03525;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=C9E96_RS03525;old_locus_tag=C9E96_03580
NZ_PYJX01000045.1	Protein Homology	CDS	15277	15702	.	-	0	ID=cds-WP_135493845.1;Parent=gene-C9E96_RS03525;Dbxref=GenBank:WP_135493845.1;Name=WP_135493845.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplO;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011095501.1;locus_tag=C9E96_RS03525;product=50S ribosomal protein L15;protein_id=WP_135493845.1;transl_table=11
##sequence-region NZ_PYJX01000171.1 1 15709
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000171.1	RefSeq	region	1	15709	.	+	.	ID=NZ_PYJX01000171.1:1..15709;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000171.1	RefSeq	gene	1	892	.	-	.	ID=gene-C9E96_RS16200;Name=C9E96_RS16200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16200;old_locus_tag=C9E96_16600;partial=true;start_range=.,1
NZ_PYJX01000171.1	Protein Homology	CDS	1	892	.	-	0	ID=cds-WP_135494393.1;Parent=gene-C9E96_RS16200;Dbxref=GenBank:WP_135494393.1;Name=WP_135494393.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459815.1;locus_tag=C9E96_RS16200;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_135494393.1;start_range=.,1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	1111	2031	.	+	.	ID=gene-C9E96_RS16205;Name=ldtB;gbkey=Gene;gene=ldtB;gene_biotype=protein_coding;locus_tag=C9E96_RS16205;old_locus_tag=C9E96_16605
NZ_PYJX01000171.1	Protein Homology	CDS	1111	2031	.	+	0	ID=cds-WP_001056404.1;Parent=gene-C9E96_RS16205;Dbxref=GenBank:WP_001056404.1;Name=WP_001056404.1;gbkey=CDS;gene=ldtB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459814.1;locus_tag=C9E96_RS16205;product=L%2CD-transpeptidase;protein_id=WP_001056404.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	2075	3187	.	-	.	ID=gene-C9E96_RS16210;Name=C9E96_RS16210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16210;old_locus_tag=C9E96_16610
NZ_PYJX01000171.1	Protein Homology	CDS	2075	3187	.	-	0	ID=cds-WP_135494395.1;Parent=gene-C9E96_RS16210;Dbxref=GenBank:WP_135494395.1;Name=WP_135494395.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459813.1;locus_tag=C9E96_RS16210;product=SLC13 family permease;protein_id=WP_135494395.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	3184	3657	.	-	.	ID=gene-C9E96_RS16215;Name=mntR;gbkey=Gene;gene=mntR;gene_biotype=protein_coding;locus_tag=C9E96_RS16215;old_locus_tag=C9E96_16615
NZ_PYJX01000171.1	Protein Homology	CDS	3184	3657	.	-	0	ID=cds-WP_135494397.1;Parent=gene-C9E96_RS16215;Dbxref=GenBank:WP_135494397.1;Name=WP_135494397.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0046914,GO:0046983;gbkey=CDS;gene=mntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transition metal ion binding|0046914||IEA,protein dimerization activity|0046983||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459812.1;locus_tag=C9E96_RS16215;product=manganese-binding transcriptional regulator MntR;protein_id=WP_135494397.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	3843	3971	.	+	.	ID=gene-C9E96_RS16220;Name=mntS;gbkey=Gene;gene=mntS;gene_biotype=protein_coding;locus_tag=C9E96_RS16220;old_locus_tag=C9E96_16620
NZ_PYJX01000171.1	Protein Homology	CDS	3843	3971	.	+	0	ID=cds-WP_001001755.1;Parent=gene-C9E96_RS16220;Dbxref=GenBank:WP_001001755.1;Name=WP_001001755.1;gbkey=CDS;gene=mntS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_008439233.1;locus_tag=C9E96_RS16220;product=manganase accumulation protein MntS;protein_id=WP_001001755.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	4236	5816	.	+	.	ID=gene-C9E96_RS16225;Name=C9E96_RS16225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16225;old_locus_tag=C9E96_16625
NZ_PYJX01000171.1	Protein Homology	CDS	4236	5816	.	+	0	ID=cds-WP_080203866.1;Parent=gene-C9E96_RS16225;Dbxref=GenBank:WP_080203866.1;Name=WP_080203866.1;Ontology_term=GO:0009244,GO:1900727,GO:0016776;gbkey=CDS;go_function=phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA,osmoregulated periplasmic glucan biosynthetic process|1900727||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459811.1;locus_tag=C9E96_RS16225;product=phosphoethanolamine transferase;protein_id=WP_080203866.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	5879	6394	.	-	.	ID=gene-C9E96_RS16230;Name=ompX;gbkey=Gene;gene=ompX;gene_biotype=protein_coding;locus_tag=C9E96_RS16230;old_locus_tag=C9E96_16630
NZ_PYJX01000171.1	Protein Homology	CDS	5879	6394	.	-	0	ID=cds-WP_000716763.1;Parent=gene-C9E96_RS16230;Dbxref=GenBank:WP_000716763.1;Name=WP_000716763.1;gbkey=CDS;gene=ompX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459810.1;locus_tag=C9E96_RS16230;product=outer membrane protein OmpX;protein_id=WP_000716763.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	6748	7635	.	+	.	ID=gene-C9E96_RS16235;Name=rhtA;gbkey=Gene;gene=rhtA;gene_biotype=protein_coding;locus_tag=C9E96_RS16235;old_locus_tag=C9E96_16635
NZ_PYJX01000171.1	Protein Homology	CDS	6748	7635	.	+	0	ID=cds-WP_001119554.1;Parent=gene-C9E96_RS16235;Dbxref=GenBank:WP_001119554.1;Name=WP_001119554.1;gbkey=CDS;gene=rhtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459809.1;locus_tag=C9E96_RS16235;product=threonine/homoserine exporter RhtA;protein_id=WP_001119554.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	7938	8441	.	+	.	ID=gene-C9E96_RS16240;Name=dps;gbkey=Gene;gene=dps;gene_biotype=protein_coding;gene_synonym=pexB;locus_tag=C9E96_RS16240;old_locus_tag=C9E96_16640
NZ_PYJX01000171.1	Protein Homology	CDS	7938	8441	.	+	0	ID=cds-WP_000100805.1;Parent=gene-C9E96_RS16240;Dbxref=GenBank:WP_000100805.1;Name=WP_000100805.1;Ontology_term=GO:0016722;gbkey=CDS;gene=dps;go_function=oxidoreductase activity%2C acting on metal ions|0016722||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001730644.1;locus_tag=C9E96_RS16240;product=DNA starvation/stationary phase protection protein Dps;protein_id=WP_000100805.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	8918	9664	.	+	.	ID=gene-C9E96_RS16245;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=C9E96_RS16245;old_locus_tag=C9E96_16645
NZ_PYJX01000171.1	Protein Homology	CDS	8918	9664	.	+	0	ID=cds-WP_000838671.1;Parent=gene-C9E96_RS16245;Dbxref=GenBank:WP_000838671.1;Name=WP_000838671.1;Ontology_term=GO:1903803,GO:0015599,GO:0043190;gbkey=CDS;gene=glnH;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled L-glutamine transmembrane transporter activity|0015599||IEA;go_process=L-glutamine import across plasma membrane|1903803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123681.1;locus_tag=C9E96_RS16245;product=glutamine ABC transporter substrate-binding protein GlnH;protein_id=WP_000838671.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	9810	10469	.	+	.	ID=gene-C9E96_RS16250;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=C9E96_RS16250;old_locus_tag=C9E96_16650
NZ_PYJX01000171.1	Protein Homology	CDS	9810	10469	.	+	0	ID=cds-WP_001159076.1;Parent=gene-C9E96_RS16250;Dbxref=GenBank:WP_001159076.1;Name=WP_001159076.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=glnP;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015367581.1;locus_tag=C9E96_RS16250;product=glutamine ABC transporter permease GlnP;protein_id=WP_001159076.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	10466	11188	.	+	.	ID=gene-C9E96_RS16255;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=C9E96_RS16255;old_locus_tag=C9E96_16655
NZ_PYJX01000171.1	Protein Homology	CDS	10466	11188	.	+	0	ID=cds-WP_000569093.1;Parent=gene-C9E96_RS16255;Dbxref=GenBank:WP_000569093.1;Name=WP_000569093.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424;gbkey=CDS;gene=glnQ;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000569103.1;locus_tag=C9E96_RS16255;product=glutamine ABC transporter ATP-binding protein GlnQ;protein_id=WP_000569093.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	11307	13529	.	+	.	ID=gene-C9E96_RS16260;Name=ybiO;gbkey=Gene;gene=ybiO;gene_biotype=protein_coding;locus_tag=C9E96_RS16260;old_locus_tag=C9E96_16660
NZ_PYJX01000171.1	Protein Homology	CDS	11307	13529	.	+	0	ID=cds-WP_080219705.1;Parent=gene-C9E96_RS16260;Dbxref=GenBank:WP_080219705.1;Name=WP_080219705.1;Ontology_term=GO:0055085;gbkey=CDS;gene=ybiO;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459804.1;locus_tag=C9E96_RS16260;product=mechanosensitive channel protein;protein_id=WP_080219705.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	13526	14452	.	-	.	ID=gene-C9E96_RS16265;Name=rlmF;gbkey=Gene;gene=rlmF;gene_biotype=protein_coding;locus_tag=C9E96_RS16265;old_locus_tag=C9E96_16665
NZ_PYJX01000171.1	Protein Homology	CDS	13526	14452	.	-	0	ID=cds-WP_001275962.1;Parent=gene-C9E96_RS16265;Dbxref=GenBank:WP_001275962.1;Name=WP_001275962.1;Ontology_term=GO:0006364,GO:0008988;gbkey=CDS;gene=rlmF;go_function=rRNA (adenine-N6-)-methyltransferase activity|0008988||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459803.1;locus_tag=C9E96_RS16265;product=23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF;protein_id=WP_001275962.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	14657	14923	.	+	.	ID=gene-C9E96_RS16270;Name=C9E96_RS16270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16270;old_locus_tag=C9E96_16670
NZ_PYJX01000171.1	Protein Homology	CDS	14657	14923	.	+	0	ID=cds-WP_000146332.1;Parent=gene-C9E96_RS16270;Dbxref=GenBank:WP_000146332.1;Name=WP_000146332.1;Ontology_term=GO:0008270;gbkey=CDS;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459802.1;locus_tag=C9E96_RS16270;product=DksA/TraR family C4-type zinc finger protein;protein_id=WP_000146332.1;transl_table=11
NZ_PYJX01000171.1	RefSeq	gene	15208	15468	.	+	.	ID=gene-C9E96_RS16275;Name=ybiJ;gbkey=Gene;gene=ybiJ;gene_biotype=protein_coding;locus_tag=C9E96_RS16275;old_locus_tag=C9E96_16675
NZ_PYJX01000171.1	Protein Homology	CDS	15208	15468	.	+	0	ID=cds-WP_000849089.1;Parent=gene-C9E96_RS16275;Dbxref=GenBank:WP_000849089.1;Name=WP_000849089.1;gbkey=CDS;gene=ybiJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459801.1;locus_tag=C9E96_RS16275;product=DUF1471 family protein YbiJ;protein_id=WP_000849089.1;transl_table=11
##sequence-region NZ_PYJX01000245.1 1 15681
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000245.1	RefSeq	region	1	15681	.	+	.	ID=NZ_PYJX01000245.1:1..15681;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000245.1	RefSeq	pseudogene	52	1644	.	+	.	ID=gene-C9E96_RS23160;Name=C9E96_RS23160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23160;old_locus_tag=C9E96_23745;partial=true;pseudo=true;start_range=.,52
NZ_PYJX01000245.1	Protein Homology	CDS	52	1644	.	+	0	ID=cds-C9E96_RS23160;Parent=gene-C9E96_RS23160;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462279.1;locus_tag=C9E96_RS23160;partial=true;product=YhdP family protein;pseudo=true;start_range=.,52;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	1789	3234	.	+	.	ID=gene-C9E96_RS23165;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=C9E96_RS23165;old_locus_tag=C9E96_23750
NZ_PYJX01000245.1	Protein Homology	CDS	1789	3234	.	+	0	ID=cds-WP_000055940.1;Parent=gene-C9E96_RS23165;Dbxref=GenBank:WP_000055940.1;Name=WP_000055940.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=tldD;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007888214.1;locus_tag=C9E96_RS23165;product=metalloprotease TldD;protein_id=WP_000055940.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	3356	4285	.	-	.	ID=gene-C9E96_RS23170;Name=aaeR;gbkey=Gene;gene=aaeR;gene_biotype=protein_coding;locus_tag=C9E96_RS23170;old_locus_tag=C9E96_23755
NZ_PYJX01000245.1	Protein Homology	CDS	3356	4285	.	-	0	ID=cds-WP_135494739.1;Parent=gene-C9E96_RS23170;Dbxref=GenBank:WP_135494739.1;Name=WP_135494739.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=aaeR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462277.1;locus_tag=C9E96_RS23170;product=HTH-type transcriptional activator AaeR;protein_id=WP_135494739.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	4467	4670	.	+	.	ID=gene-C9E96_RS23175;Name=aaeX;gbkey=Gene;gene=aaeX;gene_biotype=protein_coding;locus_tag=C9E96_RS23175;old_locus_tag=C9E96_23760
NZ_PYJX01000245.1	Protein Homology	CDS	4467	4670	.	+	0	ID=cds-WP_000051840.1;Parent=gene-C9E96_RS23175;Dbxref=GenBank:WP_000051840.1;Name=WP_000051840.1;gbkey=CDS;gene=aaeX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000051842.1;locus_tag=C9E96_RS23175;product=p-hydroxybenzoic acid efflux pump operon protein AaeX;protein_id=WP_000051840.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	4678	5610	.	+	.	ID=gene-C9E96_RS23180;Name=aaeA;gbkey=Gene;gene=aaeA;gene_biotype=protein_coding;locus_tag=C9E96_RS23180;old_locus_tag=C9E96_23765
NZ_PYJX01000245.1	Protein Homology	CDS	4678	5610	.	+	0	ID=cds-WP_000855134.1;Parent=gene-C9E96_RS23180;Dbxref=GenBank:WP_000855134.1;Name=WP_000855134.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=aaeA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462275.1;locus_tag=C9E96_RS23180;product=p-hydroxybenzoic acid efflux pump subunit AaeA;protein_id=WP_000855134.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	5616	7583	.	+	.	ID=gene-C9E96_RS23185;Name=aaeB;gbkey=Gene;gene=aaeB;gene_biotype=protein_coding;locus_tag=C9E96_RS23185;old_locus_tag=C9E96_23770
NZ_PYJX01000245.1	Protein Homology	CDS	5616	7583	.	+	0	ID=cds-WP_000510913.1;Parent=gene-C9E96_RS23185;Dbxref=GenBank:WP_000510913.1;Name=WP_000510913.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=aaeB;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462274.1;locus_tag=C9E96_RS23185;product=p-hydroxybenzoic acid efflux pump subunit AaeB;protein_id=WP_000510913.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	7755	8027	.	+	.	ID=gene-C9E96_RS23190;Name=C9E96_RS23190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23190;old_locus_tag=C9E96_23775
NZ_PYJX01000245.1	Protein Homology	CDS	7755	8027	.	+	0	ID=cds-WP_001103887.1;Parent=gene-C9E96_RS23190;Dbxref=GenBank:WP_001103887.1;Name=WP_001103887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462273.1;locus_tag=C9E96_RS23190;product=barstar family protein;protein_id=WP_001103887.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	8093	8353	.	-	.	ID=gene-C9E96_RS23195;Name=yhcN-B;gbkey=Gene;gene=yhcN-B;gene_biotype=protein_coding;locus_tag=C9E96_RS23195;old_locus_tag=C9E96_23780
NZ_PYJX01000245.1	Protein Homology	CDS	8093	8353	.	-	0	ID=cds-WP_135494742.1;Parent=gene-C9E96_RS23195;Dbxref=GenBank:WP_135494742.1;Name=WP_135494742.1;gbkey=CDS;gene=yhcN-B;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462272.1;locus_tag=C9E96_RS23195;product=DUF1471 family stress response protein YhcN-B;protein_id=WP_135494742.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	8457	8720	.	-	.	ID=gene-C9E96_RS23200;Name=yhcN;gbkey=Gene;gene=yhcN;gene_biotype=protein_coding;locus_tag=C9E96_RS23200;old_locus_tag=C9E96_23785
NZ_PYJX01000245.1	Protein Homology	CDS	8457	8720	.	-	0	ID=cds-WP_080204077.1;Parent=gene-C9E96_RS23200;Dbxref=GenBank:WP_080204077.1;Name=WP_080204077.1;gbkey=CDS;gene=yhcN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462271.1;locus_tag=C9E96_RS23200;product=peroxide/acid stress response protein YhcN;protein_id=WP_080204077.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	9085	9555	.	-	.	ID=gene-C9E96_RS23205;Name=argR;gbkey=Gene;gene=argR;gene_biotype=protein_coding;locus_tag=C9E96_RS23205;old_locus_tag=C9E96_23790
NZ_PYJX01000245.1	Protein Homology	CDS	9085	9555	.	-	0	ID=cds-WP_001257852.1;Parent=gene-C9E96_RS23205;Dbxref=GenBank:WP_001257852.1;Name=WP_001257852.1;gbkey=CDS;gene=argR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001257852.1;locus_tag=C9E96_RS23205;product=transcriptional regulator ArgR;protein_id=WP_001257852.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	9970	10908	.	+	.	ID=gene-C9E96_RS23210;Name=mdh;gbkey=Gene;gene=mdh;gene_biotype=protein_coding;locus_tag=C9E96_RS23210;old_locus_tag=C9E96_23795
NZ_PYJX01000245.1	Protein Homology	CDS	9970	10908	.	+	0	ID=cds-WP_135494745.1;Parent=gene-C9E96_RS23210;Dbxref=GenBank:WP_135494745.1;Name=WP_135494745.1;Ontology_term=GO:0006099,GO:0030060;gbkey=CDS;gene=mdh;go_function=L-malate dehydrogenase (NAD+) activity|0030060||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000861594.1;locus_tag=C9E96_RS23210;product=malate dehydrogenase;protein_id=WP_135494745.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	11028	11657	.	+	.	ID=gene-C9E96_RS23215;Name=C9E96_RS23215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23215;old_locus_tag=C9E96_23800
NZ_PYJX01000245.1	Protein Homology	CDS	11028	11657	.	+	0	ID=cds-WP_000723776.1;Parent=gene-C9E96_RS23215;Dbxref=GenBank:WP_000723776.1;Name=WP_000723776.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462268.1;locus_tag=C9E96_RS23215;product=GntR family transcriptional regulator;protein_id=WP_000723776.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	11644	12309	.	+	.	ID=gene-C9E96_RS23220;Name=C9E96_RS23220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23220;old_locus_tag=C9E96_23805
NZ_PYJX01000245.1	Protein Homology	CDS	11644	12309	.	+	0	ID=cds-WP_001171581.1;Parent=gene-C9E96_RS23220;Dbxref=GenBank:WP_001171581.1;Name=WP_001171581.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462267.1;locus_tag=C9E96_RS23220;product=GntR family transcriptional regulator;protein_id=WP_001171581.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	12520	13788	.	+	.	ID=gene-C9E96_RS23225;Name=C9E96_RS23225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23225;old_locus_tag=C9E96_23810
NZ_PYJX01000245.1	Protein Homology	CDS	12520	13788	.	+	0	ID=cds-WP_023993978.1;Parent=gene-C9E96_RS23225;Dbxref=GenBank:WP_023993978.1;Name=WP_023993978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462266.1;locus_tag=C9E96_RS23225;product=SLC13 family permease;protein_id=WP_023993978.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	13821	14720	.	+	.	ID=gene-C9E96_RS23230;Name=ttdA;gbkey=Gene;gene=ttdA;gene_biotype=protein_coding;locus_tag=C9E96_RS23230;old_locus_tag=C9E96_23815
NZ_PYJX01000245.1	Protein Homology	CDS	13821	14720	.	+	0	ID=cds-WP_000045349.1;Parent=gene-C9E96_RS23230;Dbxref=GenBank:WP_000045349.1;Name=WP_000045349.1;Ontology_term=GO:0008730;gbkey=CDS;gene=ttdA;go_function=L(+)-tartrate dehydratase activity|0008730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462265.1;locus_tag=C9E96_RS23230;product=L(+)-tartrate dehydratase subunit alpha;protein_id=WP_000045349.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	14720	15337	.	+	.	ID=gene-C9E96_RS23235;Name=ttdB;gbkey=Gene;gene=ttdB;gene_biotype=protein_coding;locus_tag=C9E96_RS23235;old_locus_tag=C9E96_23820
NZ_PYJX01000245.1	Protein Homology	CDS	14720	15337	.	+	0	ID=cds-WP_000162405.1;Parent=gene-C9E96_RS23235;Dbxref=GenBank:WP_000162405.1;Name=WP_000162405.1;Ontology_term=GO:0016836;gbkey=CDS;gene=ttdB;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462264.1;locus_tag=C9E96_RS23235;product=L(+)-tartrate dehydratase subunit beta;protein_id=WP_000162405.1;transl_table=11
NZ_PYJX01000245.1	RefSeq	gene	15494	15681	.	+	.	ID=gene-C9E96_RS23240;Name=C9E96_RS23240;end_range=15681,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23240;old_locus_tag=C9E96_23825;partial=true
NZ_PYJX01000245.1	Protein Homology	CDS	15494	15681	.	+	0	ID=cds-WP_135494748.1;Parent=gene-C9E96_RS23240;Dbxref=GenBank:WP_135494748.1;Name=WP_135494748.1;end_range=15681,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462263.1;locus_tag=C9E96_RS23240;partial=true;product=oxaloacetate decarboxylase subunit gamma;protein_id=WP_135494748.1;transl_table=11
##sequence-region NZ_PYJX01000235.1 1 15084
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000235.1	RefSeq	region	1	15084	.	+	.	ID=NZ_PYJX01000235.1:1..15084;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000235.1	RefSeq	gene	122	2260	.	-	.	ID=gene-C9E96_RS22470;Name=nrdD;gbkey=Gene;gene=nrdD;gene_biotype=protein_coding;locus_tag=C9E96_RS22470;old_locus_tag=C9E96_23050
NZ_PYJX01000235.1	Protein Homology	CDS	122	2260	.	-	0	ID=cds-WP_135494673.1;Parent=gene-C9E96_RS22470;Dbxref=GenBank:WP_135494673.1;Name=WP_135494673.1;Ontology_term=GO:0006260,GO:0008998;gbkey=CDS;gene=nrdD;go_function=ribonucleoside-triphosphate reductase (thioredoxin) activity|0008998||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463313.1;locus_tag=C9E96_RS22470;product=anaerobic ribonucleoside-triphosphate reductase;protein_id=WP_135494673.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	2669	4321	.	-	.	ID=gene-C9E96_RS22475;Name=treC;gbkey=Gene;gene=treC;gene_biotype=protein_coding;locus_tag=C9E96_RS22475;old_locus_tag=C9E96_23055
NZ_PYJX01000235.1	Protein Homology	CDS	2669	4321	.	-	0	ID=cds-WP_135369840.1;Parent=gene-C9E96_RS22475;Dbxref=GenBank:WP_135369840.1;Name=WP_135369840.1;Ontology_term=GO:0005991,GO:0008788,GO:0005737;gbkey=CDS;gene=treC;go_component=cytoplasm|0005737||IEA;go_function=alpha%2Calpha-phosphotrehalase activity|0008788||IEA;go_process=trehalose metabolic process|0005991||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463314.1;locus_tag=C9E96_RS22475;product=alpha%2Calpha-phosphotrehalase;protein_id=WP_135369840.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	4371	5789	.	-	.	ID=gene-C9E96_RS22480;Name=treB;gbkey=Gene;gene=treB;gene_biotype=protein_coding;locus_tag=C9E96_RS22480;old_locus_tag=C9E96_23060
NZ_PYJX01000235.1	Protein Homology	CDS	4371	5789	.	-	0	ID=cds-WP_135494676.1;Parent=gene-C9E96_RS22480;Dbxref=GenBank:WP_135494676.1;Name=WP_135494676.1;Ontology_term=GO:0009401,GO:0015771,GO:0008982,GO:0015574,GO:0016020;gbkey=CDS;gene=treB;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,trehalose transmembrane transporter activity|0015574||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,trehalose transport|0015771||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224799.1;locus_tag=C9E96_RS22480;product=PTS trehalose transporter subunit IIBC;protein_id=WP_135494676.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	5927	6874	.	-	.	ID=gene-C9E96_RS22485;Name=treR;gbkey=Gene;gene=treR;gene_biotype=protein_coding;locus_tag=C9E96_RS22485;old_locus_tag=C9E96_23065
NZ_PYJX01000235.1	Protein Homology	CDS	5927	6874	.	-	0	ID=cds-WP_001181297.1;Parent=gene-C9E96_RS22485;Dbxref=GenBank:WP_001181297.1;Name=WP_001181297.1;Ontology_term=GO:0005991,GO:0006355,GO:0045892,GO:0003677;gbkey=CDS;gene=treR;go_function=DNA binding|0003677||IEA;go_process=trehalose metabolic process|0005991||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463315.1;locus_tag=C9E96_RS22485;product=trehalose operon repressor TreR;protein_id=WP_001181297.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	7064	7117	.	+	.	ID=gene-C9E96_RS24595;Name=mgtL;gbkey=Gene;gene=mgtL;gene_biotype=protein_coding;locus_tag=C9E96_RS24595
NZ_PYJX01000235.1	Protein Homology	CDS	7064	7117	.	+	0	ID=cds-WP_099374030.1;Parent=gene-C9E96_RS24595;Dbxref=GenBank:WP_099374030.1;Name=WP_099374030.1;gbkey=CDS;gene=mgtL;inference=COORDINATES: protein motif:HMM:NF028369.6;locus_tag=C9E96_RS24595;product=mgtA regulatory leader peptide MgtL;protein_id=WP_099374030.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	7258	9966	.	+	.	ID=gene-C9E96_RS22495;Name=mgtA;gbkey=Gene;gene=mgtA;gene_biotype=protein_coding;locus_tag=C9E96_RS22495;old_locus_tag=C9E96_23070
NZ_PYJX01000235.1	Protein Homology	CDS	7258	9966	.	+	0	ID=cds-WP_135494679.1;Parent=gene-C9E96_RS22495;Dbxref=GenBank:WP_135494679.1;Name=WP_135494679.1;Ontology_term=GO:0015693,GO:0015444,GO:0016020;gbkey=CDS;gene=mgtA;go_component=membrane|0016020||IEA;go_function=P-type magnesium transporter activity|0015444||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463316.1;locus_tag=C9E96_RS22495;product=magnesium-translocating P-type ATPase;protein_id=WP_135494679.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	10055	10441	.	-	.	ID=gene-C9E96_RS22500;Name=ridA;gbkey=Gene;gene=ridA;gene_biotype=protein_coding;locus_tag=C9E96_RS22500;old_locus_tag=C9E96_23075
NZ_PYJX01000235.1	Protein Homology	CDS	10055	10441	.	-	0	ID=cds-WP_000047544.1;Parent=gene-C9E96_RS22500;Dbxref=GenBank:WP_000047544.1;Name=WP_000047544.1;gbkey=CDS;gene=ridA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463318.1;locus_tag=C9E96_RS22500;product=2-iminobutanoate/2-iminopropanoate deaminase;protein_id=WP_000047544.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	10518	10979	.	-	.	ID=gene-C9E96_RS22505;Name=pyrI;gbkey=Gene;gene=pyrI;gene_biotype=protein_coding;locus_tag=C9E96_RS22505;old_locus_tag=C9E96_23080
NZ_PYJX01000235.1	Protein Homology	CDS	10518	10979	.	-	0	ID=cds-WP_000148567.1;Parent=gene-C9E96_RS22505;Dbxref=GenBank:WP_000148567.1;Name=WP_000148567.1;Ontology_term=GO:0006207,GO:0009347;gbkey=CDS;gene=pyrI;go_component=aspartate carbamoyltransferase complex|0009347||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000148566.1;locus_tag=C9E96_RS22505;product=aspartate carbamoyltransferase regulatory subunit;protein_id=WP_000148567.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	10992	11927	.	-	.	ID=gene-C9E96_RS22510;Name=pyrB;gbkey=Gene;gene=pyrB;gene_biotype=protein_coding;locus_tag=C9E96_RS22510;old_locus_tag=C9E96_23085
NZ_PYJX01000235.1	Protein Homology	CDS	10992	11927	.	-	0	ID=cds-WP_000013055.1;Parent=gene-C9E96_RS22510;Dbxref=GenBank:WP_000013055.1;Name=WP_000013055.1;Ontology_term=GO:0006207,GO:0004070;gbkey=CDS;gene=pyrB;go_function=aspartate carbamoyltransferase activity|0004070||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463320.1;locus_tag=C9E96_RS22510;product=aspartate carbamoyltransferase;protein_id=WP_000013055.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	11963	12064	.	-	.	ID=gene-C9E96_RS22515;Name=pyrL;gbkey=Gene;gene=pyrL;gene_biotype=protein_coding;locus_tag=C9E96_RS22515;old_locus_tag=C9E96_23090
NZ_PYJX01000235.1	Protein Homology	CDS	11963	12064	.	-	0	ID=cds-WP_000249504.1;Parent=gene-C9E96_RS22515;Dbxref=GenBank:WP_000249504.1;Name=WP_000249504.1;gbkey=CDS;gene=pyrL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313250.1;locus_tag=C9E96_RS22515;product=pyr operon leader peptide;protein_id=WP_000249504.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	12044	12184	.	+	.	ID=gene-C9E96_RS22520;Name=C9E96_RS22520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22520;old_locus_tag=C9E96_23095
NZ_PYJX01000235.1	Protein Homology	CDS	12044	12184	.	+	0	ID=cds-WP_001518160.1;Parent=gene-C9E96_RS22520;Dbxref=GenBank:WP_001518160.1;Name=WP_001518160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453732.1;locus_tag=C9E96_RS22520;product=hypothetical protein;protein_id=WP_001518160.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	12154	12642	.	-	.	ID=gene-C9E96_RS22525;Name=C9E96_RS22525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22525;old_locus_tag=C9E96_23100
NZ_PYJX01000235.1	Protein Homology	CDS	12154	12642	.	-	0	ID=cds-WP_000666051.1;Parent=gene-C9E96_RS22525;Dbxref=GenBank:WP_000666051.1;Name=WP_000666051.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463323.1;locus_tag=C9E96_RS22525;product=arginine repressor;protein_id=WP_000666051.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	12829	14232	.	-	.	ID=gene-C9E96_RS22530;Name=C9E96_RS22530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22530;old_locus_tag=C9E96_23105
NZ_PYJX01000235.1	Protein Homology	CDS	12829	14232	.	-	0	ID=cds-WP_080203715.1;Parent=gene-C9E96_RS22530;Dbxref=GenBank:WP_080203715.1;Name=WP_080203715.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463324.1;locus_tag=C9E96_RS22530;product=YfcC family protein;protein_id=WP_080203715.1;transl_table=11
NZ_PYJX01000235.1	RefSeq	gene	14288	15084	.	-	.	ID=gene-C9E96_RS22535;Name=argF;end_range=15084,.;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=C9E96_RS22535;old_locus_tag=C9E96_23110;partial=true
NZ_PYJX01000235.1	Protein Homology	CDS	14288	15084	.	-	2	ID=cds-WP_135494682.1;Parent=gene-C9E96_RS22535;Dbxref=GenBank:WP_135494682.1;Name=WP_135494682.1;Ontology_term=GO:0042450,GO:0004585;end_range=15084,.;gbkey=CDS;gene=argF;go_function=ornithine carbamoyltransferase activity|0004585||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463325.1;locus_tag=C9E96_RS22535;partial=true;product=ornithine carbamoyltransferase;protein_id=WP_135494682.1;transl_table=11
##sequence-region NZ_PYJX01000051.1 1 15003
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000051.1	RefSeq	region	1	15003	.	+	.	ID=NZ_PYJX01000051.1:1..15003;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000051.1	RefSeq	gene	106	2268	.	-	.	ID=gene-C9E96_RS04490;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;gene_synonym=mutU,recL;locus_tag=C9E96_RS04490;old_locus_tag=C9E96_04590
NZ_PYJX01000051.1	Protein Homology	CDS	106	2268	.	-	0	ID=cds-WP_000383432.1;Parent=gene-C9E96_RS04490;Dbxref=GenBank:WP_000383432.1;Name=WP_000383432.1;Ontology_term=GO:0006260,GO:0003677,GO:0003678,GO:0005524,GO:0016787;gbkey=CDS;gene=uvrD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462836.1;locus_tag=C9E96_RS04490;product=DNA helicase II;protein_id=WP_000383432.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	2404	3120	.	-	.	ID=gene-C9E96_RS04495;Name=yigB;gbkey=Gene;gene=yigB;gene_biotype=protein_coding;locus_tag=C9E96_RS04495;old_locus_tag=C9E96_04595
NZ_PYJX01000051.1	Protein Homology	CDS	2404	3120	.	-	0	ID=cds-WP_080204062.1;Parent=gene-C9E96_RS04495;Dbxref=GenBank:WP_080204062.1;Name=WP_080204062.1;gbkey=CDS;gene=yigB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462835.1;locus_tag=C9E96_RS04495;product=5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB;protein_id=WP_080204062.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	3120	4022	.	-	.	ID=gene-C9E96_RS04500;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=C9E96_RS04500;old_locus_tag=C9E96_04600
NZ_PYJX01000051.1	Protein Homology	CDS	3120	4022	.	-	0	ID=cds-WP_000132874.1;Parent=gene-C9E96_RS04500;Dbxref=GenBank:WP_000132874.1;Name=WP_000132874.1;Ontology_term=GO:0006310,GO:0007059,GO:0015074,GO:0051301,GO:0003677;gbkey=CDS;gene=xerC;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,chromosome segregation|0007059||IEA,DNA integration|0015074||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462834.1;locus_tag=C9E96_RS04500;product=tyrosine recombinase XerC;protein_id=WP_000132874.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	4019	4726	.	-	.	ID=gene-C9E96_RS04505;Name=C9E96_RS04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04505;old_locus_tag=C9E96_04605
NZ_PYJX01000051.1	Protein Homology	CDS	4019	4726	.	-	0	ID=cds-WP_000812763.1;Parent=gene-C9E96_RS04505;Dbxref=GenBank:WP_000812763.1;Name=WP_000812763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462833.1;locus_tag=C9E96_RS04505;product=DUF484 domain-containing protein;protein_id=WP_000812763.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	4723	5547	.	-	.	ID=gene-C9E96_RS04510;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=C9E96_RS04510;old_locus_tag=C9E96_04610
NZ_PYJX01000051.1	Protein Homology	CDS	4723	5547	.	-	0	ID=cds-WP_001160671.1;Parent=gene-C9E96_RS04510;Dbxref=GenBank:WP_001160671.1;Name=WP_001160671.1;Ontology_term=GO:0009089,GO:0008837;gbkey=CDS;gene=dapF;go_function=diaminopimelate epimerase activity|0008837||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133314.1;locus_tag=C9E96_RS04510;product=diaminopimelate epimerase;protein_id=WP_001160671.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	5584	5787	.	-	.	ID=gene-C9E96_RS04515;Name=lptM;gbkey=Gene;gene=lptM;gene_biotype=protein_coding;gene_synonym=yifL;locus_tag=C9E96_RS04515;old_locus_tag=C9E96_04615
NZ_PYJX01000051.1	Protein Homology	CDS	5584	5787	.	-	0	ID=cds-WP_135493886.1;Parent=gene-C9E96_RS04515;Dbxref=GenBank:WP_135493886.1;Name=WP_135493886.1;gbkey=CDS;gene=lptM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462831.1;locus_tag=C9E96_RS04515;product=LPS translocon maturation chaperone LptM;protein_id=WP_135493886.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	5973	6224	.	+	.	ID=gene-C9E96_RS23930;Name=C9E96_RS23930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23930;old_locus_tag=C9E96_04620
NZ_PYJX01000051.1	GeneMarkS-2+	CDS	5973	6224	.	+	0	ID=cds-WP_024145461.1;Parent=gene-C9E96_RS23930;Dbxref=GenBank:WP_024145461.1;Name=WP_024145461.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS23930;product=hypothetical protein;protein_id=WP_024145461.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	pseudogene	6194	6495	.	+	.	ID=gene-C9E96_RS04520;Name=C9E96_RS04520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS04520;old_locus_tag=C9E96_04625;partial=true;pseudo=true;start_range=.,6194
NZ_PYJX01000051.1	Protein Homology	CDS	6194	6495	.	+	0	ID=cds-C9E96_RS04520;Parent=gene-C9E96_RS04520;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001200019.1;locus_tag=C9E96_RS04520;partial=true;product=hypothetical protein;pseudo=true;start_range=.,6194;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	6483	6872	.	+	.	ID=gene-C9E96_RS04525;Name=C9E96_RS04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04525;old_locus_tag=C9E96_04630
NZ_PYJX01000051.1	Protein Homology	CDS	6483	6872	.	+	0	ID=cds-WP_001125557.1;Parent=gene-C9E96_RS04525;Dbxref=GenBank:WP_001125557.1;Name=WP_001125557.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462830.1;locus_tag=C9E96_RS04525;product=DUF3021 family protein;protein_id=WP_001125557.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	6942	7262	.	+	.	ID=gene-C9E96_RS04530;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=C9E96_RS04530;old_locus_tag=C9E96_04635
NZ_PYJX01000051.1	Protein Homology	CDS	6942	7262	.	+	0	ID=cds-WP_000999919.1;Parent=gene-C9E96_RS04530;Dbxref=GenBank:WP_000999919.1;Name=WP_000999919.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=cyaY;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000999950.1;locus_tag=C9E96_RS04530;product=iron donor protein CyaY;protein_id=WP_000999919.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	7340	9886	.	-	.	ID=gene-C9E96_RS04535;Name=cyaA;gbkey=Gene;gene=cyaA;gene_biotype=protein_coding;locus_tag=C9E96_RS04535;old_locus_tag=C9E96_04640
NZ_PYJX01000051.1	Protein Homology	CDS	7340	9886	.	-	0	ID=cds-WP_080204063.1;Parent=gene-C9E96_RS04535;Dbxref=GenBank:WP_080204063.1;Name=WP_080204063.1;Ontology_term=GO:0006171,GO:0004016;gbkey=CDS;gene=cyaA;go_function=adenylate cyclase activity|0004016||IEA;go_process=cAMP biosynthetic process|0006171||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462825.1;locus_tag=C9E96_RS04535;product=class I adenylate cyclase;protein_id=WP_080204063.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	10263	11204	.	+	.	ID=gene-C9E96_RS04540;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=C9E96_RS04540;old_locus_tag=C9E96_04645
NZ_PYJX01000051.1	Protein Homology	CDS	10263	11204	.	+	0	ID=cds-WP_001521319.1;Parent=gene-C9E96_RS04540;Dbxref=GenBank:WP_001521319.1;Name=WP_001521319.1;Ontology_term=GO:0033014,GO:0004418;gbkey=CDS;gene=hemC;go_function=hydroxymethylbilane synthase activity|0004418||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026260.1;locus_tag=C9E96_RS04540;product=hydroxymethylbilane synthase;protein_id=WP_001521319.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	11201	11941	.	+	.	ID=gene-C9E96_RS04545;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=C9E96_RS04545;old_locus_tag=C9E96_04650
NZ_PYJX01000051.1	Protein Homology	CDS	11201	11941	.	+	0	ID=cds-WP_000025494.1;Parent=gene-C9E96_RS04545;Dbxref=GenBank:WP_000025494.1;Name=WP_000025494.1;Ontology_term=GO:0006780,GO:0004852;gbkey=CDS;gene=hemD;go_function=uroporphyrinogen-III synthase activity|0004852||IEA;go_process=uroporphyrinogen III biosynthetic process|0006780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462823.1;locus_tag=C9E96_RS04545;product=uroporphyrinogen-III synthase;protein_id=WP_000025494.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	11963	13132	.	+	.	ID=gene-C9E96_RS04550;Name=hemX;gbkey=Gene;gene=hemX;gene_biotype=protein_coding;locus_tag=C9E96_RS04550;old_locus_tag=C9E96_04655
NZ_PYJX01000051.1	Protein Homology	CDS	11963	13132	.	+	0	ID=cds-WP_080204064.1;Parent=gene-C9E96_RS04550;Dbxref=GenBank:WP_080204064.1;Name=WP_080204064.1;gbkey=CDS;gene=hemX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462822.1;locus_tag=C9E96_RS04550;product=uroporphyrinogen-III C-methyltransferase;protein_id=WP_080204064.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	13135	14331	.	+	.	ID=gene-C9E96_RS04555;Name=hemY;gbkey=Gene;gene=hemY;gene_biotype=protein_coding;locus_tag=C9E96_RS04555;old_locus_tag=C9E96_04660
NZ_PYJX01000051.1	Protein Homology	CDS	13135	14331	.	+	0	ID=cds-WP_023602562.1;Parent=gene-C9E96_RS04555;Dbxref=GenBank:WP_023602562.1;Name=WP_023602562.1;Ontology_term=GO:0042168,GO:0005515,GO:0016020;gbkey=CDS;gene=hemY;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA;go_process=heme metabolic process|0042168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312759.1;locus_tag=C9E96_RS04555;product=protoheme IX biogenesis protein HemY;protein_id=WP_023602562.1;transl_table=11
NZ_PYJX01000051.1	RefSeq	gene	14913	14989	.	-	.	ID=gene-C9E96_RS04560;Name=C9E96_RS04560;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS04560;old_locus_tag=C9E96_04665
NZ_PYJX01000051.1	tRNAscan-SE	tRNA	14913	14989	.	-	.	ID=rna-C9E96_RS04560;Parent=gene-C9E96_RS04560;anticodon=(pos:complement(14953..14955));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04560;product=tRNA-Pro
NZ_PYJX01000051.1	tRNAscan-SE	exon	14913	14989	.	-	.	ID=exon-C9E96_RS04560-1;Parent=rna-C9E96_RS04560;anticodon=(pos:complement(14953..14955));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04560;product=tRNA-Pro
##sequence-region NZ_PYJX01000085.1 1 14995
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000085.1	RefSeq	region	1	14995	.	+	.	ID=NZ_PYJX01000085.1:1..14995;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000085.1	RefSeq	gene	1	1052	.	+	.	ID=gene-C9E96_RS07735;Name=setB;gbkey=Gene;gene=setB;gene_biotype=protein_coding;locus_tag=C9E96_RS07735;old_locus_tag=C9E96_07915;partial=true;start_range=.,1
NZ_PYJX01000085.1	Protein Homology	CDS	1	1052	.	+	2	ID=cds-WP_135494054.1;Parent=gene-C9E96_RS07735;Dbxref=GenBank:WP_135494054.1;Name=WP_135494054.1;Ontology_term=GO:0008643,GO:0055085,GO:0005351,GO:0022857,GO:0016020;gbkey=CDS;gene=setB;go_component=membrane|0016020||IEA;go_function=carbohydrate:proton symporter activity|0005351||IEA,transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461152.1;locus_tag=C9E96_RS07735;partial=true;product=sugar efflux transporter SetB;protein_id=WP_135494054.1;start_range=.,1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	1117	1782	.	-	.	ID=gene-C9E96_RS07740;Name=C9E96_RS07740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07740;old_locus_tag=C9E96_07920
NZ_PYJX01000085.1	Protein Homology	CDS	1117	1782	.	-	0	ID=cds-WP_080203705.1;Parent=gene-C9E96_RS07740;Dbxref=GenBank:WP_080203705.1;Name=WP_080203705.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461153.1;locus_tag=C9E96_RS07740;product=GNVR domain-containing protein;protein_id=WP_080203705.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	1784	1906	.	-	.	ID=gene-C9E96_RS07745;Name=C9E96_RS07745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07745;old_locus_tag=C9E96_07925
NZ_PYJX01000085.1	Protein Homology	CDS	1784	1906	.	-	0	ID=cds-WP_001519564.1;Parent=gene-C9E96_RS07745;Dbxref=GenBank:WP_001519564.1;Name=WP_001519564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461154.1;locus_tag=C9E96_RS07745;product=membrane protein;protein_id=WP_001519564.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	2294	2548	.	-	.	ID=gene-C9E96_RS07750;Name=C9E96_RS07750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07750;old_locus_tag=C9E96_07930
NZ_PYJX01000085.1	Protein Homology	CDS	2294	2548	.	-	0	ID=cds-WP_001523448.1;Parent=gene-C9E96_RS07750;Dbxref=GenBank:WP_001523448.1;Name=WP_001523448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675765.1;locus_tag=C9E96_RS07750;product=YkgJ family cysteine cluster protein;protein_id=WP_001523448.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	2872	3444	.	+	.	ID=gene-C9E96_RS07755;Name=yeiP;gbkey=Gene;gene=yeiP;gene_biotype=protein_coding;locus_tag=C9E96_RS07755;old_locus_tag=C9E96_07935
NZ_PYJX01000085.1	Protein Homology	CDS	2872	3444	.	+	0	ID=cds-WP_001136822.1;Parent=gene-C9E96_RS07755;Dbxref=GenBank:WP_001136822.1;Name=WP_001136822.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=yeiP;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007750416.1;locus_tag=C9E96_RS07755;product=elongation factor P-like protein YeiP;protein_id=WP_001136822.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	3656	4642	.	+	.	ID=gene-C9E96_RS07760;Name=C9E96_RS07760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07760;old_locus_tag=C9E96_07940
NZ_PYJX01000085.1	Protein Homology	CDS	3656	4642	.	+	0	ID=cds-WP_020899022.1;Parent=gene-C9E96_RS07760;Dbxref=GenBank:WP_020899022.1;Name=WP_020899022.1;Ontology_term=GO:0003924,GO:0005525,GO:0046872;gbkey=CDS;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461156.1;locus_tag=C9E96_RS07760;product=CobW family GTP-binding protein;protein_id=WP_020899022.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	4672	5391	.	+	.	ID=gene-C9E96_RS07765;Name=C9E96_RS07765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07765;old_locus_tag=C9E96_07945
NZ_PYJX01000085.1	Protein Homology	CDS	4672	5391	.	+	0	ID=cds-WP_000178091.1;Parent=gene-C9E96_RS07765;Dbxref=GenBank:WP_000178091.1;Name=WP_000178091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461157.1;locus_tag=C9E96_RS07765;product=phosphatase PAP2 family protein;protein_id=WP_000178091.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	5805	6377	.	+	.	ID=gene-C9E96_RS07770;Name=mepS;gbkey=Gene;gene=mepS;gene_biotype=protein_coding;locus_tag=C9E96_RS07770;old_locus_tag=C9E96_07955
NZ_PYJX01000085.1	Protein Homology	CDS	5805	6377	.	+	0	ID=cds-WP_000241015.1;Parent=gene-C9E96_RS07770;Dbxref=GenBank:WP_000241015.1;Name=WP_000241015.1;gbkey=CDS;gene=mepS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461158.1;locus_tag=C9E96_RS07770;product=bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase;protein_id=WP_000241015.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	6703	8259	.	+	.	ID=gene-C9E96_RS07775;Name=C9E96_RS07775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07775;old_locus_tag=C9E96_07965
NZ_PYJX01000085.1	Protein Homology	CDS	6703	8259	.	+	0	ID=cds-WP_080203707.1;Parent=gene-C9E96_RS07775;Dbxref=GenBank:WP_080203707.1;Name=WP_080203707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461159.1;locus_tag=C9E96_RS07775;product=cyclic di-GMP phosphodiesterase;protein_id=WP_080203707.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	8366	10171	.	+	.	ID=gene-C9E96_RS07780;Name=C9E96_RS07780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07780;old_locus_tag=C9E96_07970
NZ_PYJX01000085.1	Protein Homology	CDS	8366	10171	.	+	0	ID=cds-WP_000561742.1;Parent=gene-C9E96_RS07780;Dbxref=GenBank:WP_000561742.1;Name=WP_000561742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461160.1;locus_tag=C9E96_RS07780;product=extracellular solute-binding protein;protein_id=WP_000561742.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	10181	11275	.	+	.	ID=gene-C9E96_RS07785;Name=C9E96_RS07785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07785;old_locus_tag=C9E96_07975
NZ_PYJX01000085.1	Protein Homology	CDS	10181	11275	.	+	0	ID=cds-WP_000501623.1;Parent=gene-C9E96_RS07785;Dbxref=GenBank:WP_000501623.1;Name=WP_000501623.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461161.1;locus_tag=C9E96_RS07785;product=microcin C ABC transporter permease YejB;protein_id=WP_000501623.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	11275	12300	.	+	.	ID=gene-C9E96_RS07790;Name=C9E96_RS07790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07790;old_locus_tag=C9E96_07980
NZ_PYJX01000085.1	Protein Homology	CDS	11275	12300	.	+	0	ID=cds-WP_001137761.1;Parent=gene-C9E96_RS07790;Dbxref=GenBank:WP_001137761.1;Name=WP_001137761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461162.1;locus_tag=C9E96_RS07790;product=ABC transporter permease;protein_id=WP_001137761.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	12302	13891	.	+	.	ID=gene-C9E96_RS07795;Name=yejF;gbkey=Gene;gene=yejF;gene_biotype=protein_coding;locus_tag=C9E96_RS07795;old_locus_tag=C9E96_07985
NZ_PYJX01000085.1	Protein Homology	CDS	12302	13891	.	+	0	ID=cds-WP_135494056.1;Parent=gene-C9E96_RS07795;Dbxref=GenBank:WP_135494056.1;Name=WP_135494056.1;Ontology_term=GO:0006810,GO:0000166,GO:0005524;gbkey=CDS;gene=yejF;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461163.1;locus_tag=C9E96_RS07795;product=microcin C ABC transporter ATP-binding protein YejF;protein_id=WP_135494056.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	gene	13895	14239	.	-	.	ID=gene-C9E96_RS07800;Name=C9E96_RS07800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07800;old_locus_tag=C9E96_07990
NZ_PYJX01000085.1	Protein Homology	CDS	13895	14239	.	-	0	ID=cds-WP_001094639.1;Parent=gene-C9E96_RS07800;Dbxref=GenBank:WP_001094639.1;Name=WP_001094639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461164.1;locus_tag=C9E96_RS07800;product=YejG family protein;protein_id=WP_001094639.1;transl_table=11
NZ_PYJX01000085.1	RefSeq	pseudogene	14630	14995	.	-	.	ID=gene-C9E96_RS07805;Name=C9E96_RS07805;end_range=14995,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS07805;old_locus_tag=C9E96_08000;partial=true;pseudo=true
NZ_PYJX01000085.1	Protein Homology	CDS	14630	14995	.	-	0	ID=cds-C9E96_RS07805;Parent=gene-C9E96_RS07805;Note=Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=14995,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461165.1;locus_tag=C9E96_RS07805;partial=true;product=Bcr/CflA family multidrug efflux transporter;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000151.1 1 14734
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000151.1	RefSeq	region	1	14734	.	+	.	ID=NZ_PYJX01000151.1:1..14734;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000151.1	RefSeq	gene	1	439	.	-	.	ID=gene-C9E96_RS13340;Name=C9E96_RS13340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13340;old_locus_tag=C9E96_13655;partial=true;start_range=.,1
NZ_PYJX01000151.1	Protein Homology	CDS	1	439	.	-	0	ID=cds-WP_280951912.1;Parent=gene-C9E96_RS13340;Dbxref=GenBank:WP_280951912.1;Name=WP_280951912.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463229.1;locus_tag=C9E96_RS13340;partial=true;product=winged-helix domain-containing protein;protein_id=WP_280951912.1;start_range=.,1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	477	902	.	-	.	ID=gene-C9E96_RS13345;Name=nsrR;gbkey=Gene;gene=nsrR;gene_biotype=protein_coding;locus_tag=C9E96_RS13345;old_locus_tag=C9E96_13660
NZ_PYJX01000151.1	Protein Homology	CDS	477	902	.	-	0	ID=cds-WP_001177632.1;Parent=gene-C9E96_RS13345;Dbxref=GenBank:WP_001177632.1;Name=WP_001177632.1;gbkey=CDS;gene=nsrR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134424.1;locus_tag=C9E96_RS13345;product=nitric oxide-sensing transcriptional repressor NsrR;protein_id=WP_001177632.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	1110	2408	.	-	.	ID=gene-C9E96_RS13350;Name=purA;gbkey=Gene;gene=purA;gene_biotype=protein_coding;locus_tag=C9E96_RS13350;old_locus_tag=C9E96_13665
NZ_PYJX01000151.1	Protein Homology	CDS	1110	2408	.	-	0	ID=cds-WP_000527960.1;Parent=gene-C9E96_RS13350;Dbxref=GenBank:WP_000527960.1;Name=WP_000527960.1;Ontology_term=GO:0009152,GO:0004019;gbkey=CDS;gene=purA;go_function=adenylosuccinate synthase activity|0004019||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019842885.1;locus_tag=C9E96_RS13350;product=adenylosuccinate synthase;protein_id=WP_000527960.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	2511	2708	.	-	.	ID=gene-C9E96_RS13355;Name=C9E96_RS13355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13355;old_locus_tag=C9E96_13670
NZ_PYJX01000151.1	Protein Homology	CDS	2511	2708	.	-	0	ID=cds-WP_001089290.1;Parent=gene-C9E96_RS13355;Dbxref=GenBank:WP_001089290.1;Name=WP_001089290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463226.1;locus_tag=C9E96_RS13355;product=DUF2065 domain-containing protein;protein_id=WP_001089290.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	2787	3791	.	-	.	ID=gene-C9E96_RS13360;Name=hflC;gbkey=Gene;gene=hflC;gene_biotype=protein_coding;locus_tag=C9E96_RS13360;old_locus_tag=C9E96_13675
NZ_PYJX01000151.1	Protein Homology	CDS	2787	3791	.	-	0	ID=cds-WP_135494298.1;Parent=gene-C9E96_RS13360;Dbxref=GenBank:WP_135494298.1;Name=WP_135494298.1;gbkey=CDS;gene=hflC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463225.1;locus_tag=C9E96_RS13360;product=protease modulator HflC;protein_id=WP_135494298.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	3794	5053	.	-	.	ID=gene-C9E96_RS13365;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=C9E96_RS13365;old_locus_tag=C9E96_13680
NZ_PYJX01000151.1	Protein Homology	CDS	3794	5053	.	-	0	ID=cds-WP_000312505.1;Parent=gene-C9E96_RS13365;Dbxref=GenBank:WP_000312505.1;Name=WP_000312505.1;Ontology_term=GO:0016020;gbkey=CDS;gene=hflK;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463224.1;locus_tag=C9E96_RS13365;product=FtsH protease activity modulator HflK;protein_id=WP_000312505.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	5268	6548	.	-	.	ID=gene-C9E96_RS13370;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=C9E96_RS13370;old_locus_tag=C9E96_13685
NZ_PYJX01000151.1	Protein Homology	CDS	5268	6548	.	-	0	ID=cds-WP_000460338.1;Parent=gene-C9E96_RS13370;Dbxref=GenBank:WP_000460338.1;Name=WP_000460338.1;Ontology_term=GO:0005525;gbkey=CDS;gene=hflX;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463223.1;locus_tag=C9E96_RS13370;product=ribosome rescue GTPase HflX;protein_id=WP_000460338.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	6620	6928	.	-	.	ID=gene-C9E96_RS13375;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=C9E96_RS13375;old_locus_tag=C9E96_13690
NZ_PYJX01000151.1	Protein Homology	CDS	6620	6928	.	-	0	ID=cds-WP_001051875.1;Parent=gene-C9E96_RS13375;Dbxref=GenBank:WP_001051875.1;Name=WP_001051875.1;Ontology_term=GO:0006355,GO:0003723;gbkey=CDS;gene=hfq;go_function=RNA binding|0003723||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463222.1;locus_tag=C9E96_RS13375;product=RNA chaperone Hfq;protein_id=WP_001051875.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	7011	7961	.	-	.	ID=gene-C9E96_RS13380;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=C9E96_RS13380;old_locus_tag=C9E96_13695
NZ_PYJX01000151.1	Protein Homology	CDS	7011	7961	.	-	0	ID=cds-WP_001000734.1;Parent=gene-C9E96_RS13380;Dbxref=GenBank:WP_001000734.1;Name=WP_001000734.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463221.1;locus_tag=C9E96_RS13380;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_001000734.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	7954	9810	.	-	.	ID=gene-C9E96_RS13385;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=C9E96_RS13385;old_locus_tag=C9E96_13700
NZ_PYJX01000151.1	Protein Homology	CDS	7954	9810	.	-	0	ID=cds-WP_080203660.1;Parent=gene-C9E96_RS13385;Dbxref=GenBank:WP_080203660.1;Name=WP_080203660.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463220.1;locus_tag=C9E96_RS13385;product=DNA mismatch repair endonuclease MutL;protein_id=WP_080203660.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	9820	11142	.	-	.	ID=gene-C9E96_RS13390;Name=amiB;gbkey=Gene;gene=amiB;gene_biotype=protein_coding;locus_tag=C9E96_RS13390;old_locus_tag=C9E96_13705
NZ_PYJX01000151.1	Protein Homology	CDS	9820	11142	.	-	0	ID=cds-WP_000640355.1;Parent=gene-C9E96_RS13390;Dbxref=GenBank:WP_000640355.1;Name=WP_000640355.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=amiB;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463219.1;locus_tag=C9E96_RS13390;product=N-acetylmuramoyl-L-alanine amidase AmiB;protein_id=WP_000640355.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	11159	11620	.	-	.	ID=gene-C9E96_RS13395;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=C9E96_RS13395;old_locus_tag=C9E96_13710
NZ_PYJX01000151.1	Protein Homology	CDS	11159	11620	.	-	0	ID=cds-WP_000981990.1;Parent=gene-C9E96_RS13395;Dbxref=GenBank:WP_000981990.1;Name=WP_000981990.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaE;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463218.1;locus_tag=C9E96_RS13395;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=WP_000981990.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	11592	13139	.	-	.	ID=gene-C9E96_RS13400;Name=nnr;gbkey=Gene;gene=nnr;gene_biotype=protein_coding;locus_tag=C9E96_RS13400;old_locus_tag=C9E96_13715
NZ_PYJX01000151.1	Protein Homology	CDS	11592	13139	.	-	0	ID=cds-WP_080203659.1;Parent=gene-C9E96_RS13400;Dbxref=GenBank:WP_080203659.1;Name=WP_080203659.1;Ontology_term=GO:0052855;gbkey=CDS;gene=nnr;go_function=ADP-dependent NAD(P)H-hydrate dehydratase activity|0052855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463217.1;locus_tag=C9E96_RS13400;product=bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase;protein_id=WP_080203659.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	13138	14277	.	+	.	ID=gene-C9E96_RS13405;Name=queG;gbkey=Gene;gene=queG;gene_biotype=protein_coding;locus_tag=C9E96_RS13405;old_locus_tag=C9E96_13720
NZ_PYJX01000151.1	Protein Homology	CDS	13138	14277	.	+	0	ID=cds-WP_001615111.1;Parent=gene-C9E96_RS13405;Dbxref=GenBank:WP_001615111.1;Name=WP_001615111.1;Ontology_term=GO:0008033,GO:0008616,GO:0051539,GO:0052693;gbkey=CDS;gene=queG;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=tRNA processing|0008033||IEA,queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418587.1;locus_tag=C9E96_RS13405;product=tRNA epoxyqueuosine(34) reductase QueG;protein_id=WP_001615111.1;transl_table=11
NZ_PYJX01000151.1	RefSeq	gene	14547	14622	.	-	.	ID=gene-C9E96_RS13410;Name=C9E96_RS13410;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS13410;old_locus_tag=C9E96_13725
NZ_PYJX01000151.1	tRNAscan-SE	tRNA	14547	14622	.	-	.	ID=rna-C9E96_RS13410;Parent=gene-C9E96_RS13410;anticodon=(pos:complement(14587..14589));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS13410;product=tRNA-Gly
NZ_PYJX01000151.1	tRNAscan-SE	exon	14547	14622	.	-	.	ID=exon-C9E96_RS13410-1;Parent=rna-C9E96_RS13410;anticodon=(pos:complement(14587..14589));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS13410;product=tRNA-Gly
NZ_PYJX01000151.1	RefSeq	gene	14659	14734	.	-	.	ID=gene-C9E96_RS13415;Name=C9E96_RS13415;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS13415;old_locus_tag=C9E96_13730
NZ_PYJX01000151.1	tRNAscan-SE	tRNA	14659	14734	.	-	.	ID=rna-C9E96_RS13415;Parent=gene-C9E96_RS13415;anticodon=(pos:complement(14699..14701));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS13415;product=tRNA-Gly
NZ_PYJX01000151.1	tRNAscan-SE	exon	14659	14734	.	-	.	ID=exon-C9E96_RS13415-1;Parent=rna-C9E96_RS13415;anticodon=(pos:complement(14699..14701));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS13415;product=tRNA-Gly
##sequence-region NZ_PYJX01000074.1 1 14688
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000074.1	RefSeq	region	1	14688	.	+	.	ID=NZ_PYJX01000074.1:1..14688;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000074.1	RefSeq	pseudogene	1	141	.	-	.	ID=gene-C9E96_RS06400;Name=C9E96_RS06400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS06400;old_locus_tag=C9E96_06555;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000074.1	Protein Homology	CDS	1	141	.	-	0	ID=cds-C9E96_RS06400;Parent=gene-C9E96_RS06400;Note=capsular polysaccharide biosynthesis protein%3B catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461049.1;locus_tag=C9E96_RS06400;partial=true;product=phosphomannomutase CpsG;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	156	1574	.	-	.	ID=gene-C9E96_RS06405;Name=C9E96_RS06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06405;old_locus_tag=C9E96_06560
NZ_PYJX01000074.1	Protein Homology	CDS	156	1574	.	-	0	ID=cds-WP_000632420.1;Parent=gene-C9E96_RS06405;Dbxref=GenBank:WP_000632420.1;Name=WP_000632420.1;Ontology_term=GO:0000271,GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000632420.1;locus_tag=C9E96_RS06405;product=mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;protein_id=WP_000632420.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	1571	2770	.	-	.	ID=gene-C9E96_RS06410;Name=C9E96_RS06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06410;old_locus_tag=C9E96_06565
NZ_PYJX01000074.1	Protein Homology	CDS	1571	2770	.	-	0	ID=cds-WP_023993368.1;Parent=gene-C9E96_RS06410;Dbxref=GenBank:WP_023993368.1;Name=WP_023993368.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000415709.1;locus_tag=C9E96_RS06410;product=glycosyltransferase;protein_id=WP_023993368.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	2757	3764	.	-	.	ID=gene-C9E96_RS06415;Name=C9E96_RS06415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06415;old_locus_tag=C9E96_06570
NZ_PYJX01000074.1	Protein Homology	CDS	2757	3764	.	-	0	ID=cds-WP_001536394.1;Parent=gene-C9E96_RS06415;Dbxref=GenBank:WP_001536394.1;Name=WP_001536394.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001536394.1;locus_tag=C9E96_RS06415;product=glycosyltransferase;protein_id=WP_001536394.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	3748	4749	.	-	.	ID=gene-C9E96_RS06420;Name=C9E96_RS06420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06420;old_locus_tag=C9E96_06575
NZ_PYJX01000074.1	Protein Homology	CDS	3748	4749	.	-	0	ID=cds-WP_000924685.1;Parent=gene-C9E96_RS06420;Dbxref=GenBank:WP_000924685.1;Name=WP_000924685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000924686.1;locus_tag=C9E96_RS06420;product=glycosyltransferase family 1 protein;protein_id=WP_000924685.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	4749	5828	.	-	.	ID=gene-C9E96_RS06425;Name=C9E96_RS06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06425;old_locus_tag=C9E96_06580
NZ_PYJX01000074.1	Protein Homology	CDS	4749	5828	.	-	0	ID=cds-WP_023993369.1;Parent=gene-C9E96_RS06425;Dbxref=GenBank:WP_023993369.1;Name=WP_023993369.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026247.6;locus_tag=C9E96_RS06425;product=EpsG family protein;protein_id=WP_023993369.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	6213	7106	.	-	.	ID=gene-C9E96_RS06430;Name=galF;gbkey=Gene;gene=galF;gene_biotype=protein_coding;locus_tag=C9E96_RS06430;old_locus_tag=C9E96_06585
NZ_PYJX01000074.1	Protein Homology	CDS	6213	7106	.	-	0	ID=cds-WP_000981469.1;Parent=gene-C9E96_RS06430;Dbxref=GenBank:WP_000981469.1;Name=WP_000981469.1;Ontology_term=GO:0006011,GO:0030234;gbkey=CDS;gene=galF;go_function=enzyme regulator activity|0030234||IEA;go_process=UDP-alpha-D-glucose metabolic process|0006011||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461043.1;locus_tag=C9E96_RS06430;product=GalU regulator GalF;protein_id=WP_000981469.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	7284	8687	.	-	.	ID=gene-C9E96_RS06435;Name=wcaM;gbkey=Gene;gene=wcaM;gene_biotype=protein_coding;locus_tag=C9E96_RS06435;old_locus_tag=C9E96_06590
NZ_PYJX01000074.1	Protein Homology	CDS	7284	8687	.	-	0	ID=cds-WP_135493988.1;Parent=gene-C9E96_RS06435;Dbxref=GenBank:WP_135493988.1;Name=WP_135493988.1;gbkey=CDS;gene=wcaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461044.1;locus_tag=C9E96_RS06435;product=colanic acid biosynthesis protein WcaM;protein_id=WP_135493988.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	8698	9918	.	-	.	ID=gene-C9E96_RS06440;Name=wcaL;gbkey=Gene;gene=wcaL;gene_biotype=protein_coding;locus_tag=C9E96_RS06440;old_locus_tag=C9E96_06595
NZ_PYJX01000074.1	Protein Homology	CDS	8698	9918	.	-	0	ID=cds-WP_135493990.1;Parent=gene-C9E96_RS06440;Dbxref=GenBank:WP_135493990.1;Name=WP_135493990.1;Ontology_term=GO:0016757;gbkey=CDS;gene=wcaL;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461045.1;locus_tag=C9E96_RS06440;product=colanic acid biosynthesis glycosyltransferase WcaL;protein_id=WP_135493990.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	9915	11195	.	-	.	ID=gene-C9E96_RS06445;Name=wcaK;gbkey=Gene;gene=wcaK;gene_biotype=protein_coding;locus_tag=C9E96_RS06445;old_locus_tag=C9E96_06600
NZ_PYJX01000074.1	Protein Homology	CDS	9915	11195	.	-	0	ID=cds-WP_000770895.1;Parent=gene-C9E96_RS06445;Dbxref=GenBank:WP_000770895.1;Name=WP_000770895.1;gbkey=CDS;gene=wcaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461046.1;locus_tag=C9E96_RS06445;product=colanic acid biosynthesis pyruvyl transferase WcaK;protein_id=WP_000770895.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	11217	12695	.	-	.	ID=gene-C9E96_RS06450;Name=wzxC;gbkey=Gene;gene=wzxC;gene_biotype=protein_coding;locus_tag=C9E96_RS06450;old_locus_tag=C9E96_06605
NZ_PYJX01000074.1	Protein Homology	CDS	11217	12695	.	-	0	ID=cds-WP_023993372.1;Parent=gene-C9E96_RS06450;Dbxref=GenBank:WP_023993372.1;Name=WP_023993372.1;gbkey=CDS;gene=wzxC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461047.1;locus_tag=C9E96_RS06450;product=colanic acid undecaprenyl disphosphate flippase WzxC;protein_id=WP_023993372.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	gene	12797	14191	.	-	.	ID=gene-C9E96_RS06455;Name=wcaJ;gbkey=Gene;gene=wcaJ;gene_biotype=protein_coding;locus_tag=C9E96_RS06455;old_locus_tag=C9E96_06610
NZ_PYJX01000074.1	Protein Homology	CDS	12797	14191	.	-	0	ID=cds-WP_000183155.1;Parent=gene-C9E96_RS06455;Dbxref=GenBank:WP_000183155.1;Name=WP_000183155.1;gbkey=CDS;gene=wcaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461048.1;locus_tag=C9E96_RS06455;product=undecaprenyl-phosphate glucose phosphotransferase;protein_id=WP_000183155.1;transl_table=11
NZ_PYJX01000074.1	RefSeq	pseudogene	14245	14688	.	-	.	ID=gene-C9E96_RS06460;Name=cpsG;end_range=14688,.;gbkey=Gene;gene=cpsG;gene_biotype=pseudogene;gene_synonym=manB;locus_tag=C9E96_RS06460;old_locus_tag=C9E96_06615;partial=true;pseudo=true
NZ_PYJX01000074.1	Protein Homology	CDS	14245	14688	.	-	0	ID=cds-C9E96_RS06460;Parent=gene-C9E96_RS06460;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=14688,.;gbkey=CDS;gene=cpsG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461049.1;locus_tag=C9E96_RS06460;partial=true;product=colanic acid biosynthesis phosphomannomutase CpsG;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000121.1 1 14670
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000121.1	RefSeq	region	1	14670	.	+	.	ID=NZ_PYJX01000121.1:1..14670;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000121.1	RefSeq	gene	99	698	.	-	.	ID=gene-C9E96_RS10435;Name=yfbR;gbkey=Gene;gene=yfbR;gene_biotype=protein_coding;locus_tag=C9E96_RS10435;old_locus_tag=C9E96_10665
NZ_PYJX01000121.1	Protein Homology	CDS	99	698	.	-	0	ID=cds-WP_000813882.1;Parent=gene-C9E96_RS10435;Dbxref=GenBank:WP_000813882.1;Name=WP_000813882.1;Ontology_term=GO:0002953;gbkey=CDS;gene=yfbR;go_function=5'-deoxynucleotidase activity|0002953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461274.1;locus_tag=C9E96_RS10435;product=5'-deoxynucleotidase;protein_id=WP_000813882.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	792	2006	.	-	.	ID=gene-C9E96_RS10440;Name=alaA;gbkey=Gene;gene=alaA;gene_biotype=protein_coding;locus_tag=C9E96_RS10440;old_locus_tag=C9E96_10670
NZ_PYJX01000121.1	Protein Homology	CDS	792	2006	.	-	0	ID=cds-WP_135494182.1;Parent=gene-C9E96_RS10440;Dbxref=GenBank:WP_135494182.1;Name=WP_135494182.1;gbkey=CDS;gene=alaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461273.1;locus_tag=C9E96_RS10440;product=alanine transaminase AlaA;protein_id=WP_135494182.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	2938	3876	.	+	.	ID=gene-C9E96_RS10450;Name=lrhA;gbkey=Gene;gene=lrhA;gene_biotype=protein_coding;locus_tag=C9E96_RS10450;old_locus_tag=C9E96_10680
NZ_PYJX01000121.1	Protein Homology	CDS	2938	3876	.	+	0	ID=cds-WP_000606288.1;Parent=gene-C9E96_RS10450;Dbxref=GenBank:WP_000606288.1;Name=WP_000606288.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=lrhA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461272.1;locus_tag=C9E96_RS10450;product=transcriptional regulator LrhA;protein_id=WP_000606288.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	3956	4108	.	+	.	ID=gene-C9E96_RS10455;Name=C9E96_RS10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10455;old_locus_tag=C9E96_10685
NZ_PYJX01000121.1	Protein Homology	CDS	3956	4108	.	+	0	ID=cds-WP_001522276.1;Parent=gene-C9E96_RS10455;Dbxref=GenBank:WP_001522276.1;Name=WP_001522276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461271.1;locus_tag=C9E96_RS10455;product=STM2329 family putative cytoplasmic protein;protein_id=WP_001522276.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	4503	4946	.	+	.	ID=gene-C9E96_RS10460;Name=nuoA;gbkey=Gene;gene=nuoA;gene_biotype=protein_coding;locus_tag=C9E96_RS10460;old_locus_tag=C9E96_10690
NZ_PYJX01000121.1	Protein Homology	CDS	4503	4946	.	+	0	ID=cds-WP_000062993.1;Parent=gene-C9E96_RS10460;Dbxref=GenBank:WP_000062993.1;Name=WP_000062993.1;gbkey=CDS;gene=nuoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461270.1;locus_tag=C9E96_RS10460;product=NADH-quinone oxidoreductase subunit NuoA;protein_id=WP_000062993.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	4962	5624	.	+	.	ID=gene-C9E96_RS10465;Name=nuoB;gbkey=Gene;gene=nuoB;gene_biotype=protein_coding;locus_tag=C9E96_RS10465;old_locus_tag=C9E96_10695
NZ_PYJX01000121.1	Protein Homology	CDS	4962	5624	.	+	0	ID=cds-WP_000386728.1;Parent=gene-C9E96_RS10465;Dbxref=GenBank:WP_000386728.1;Name=WP_000386728.1;gbkey=CDS;gene=nuoB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461269.1;locus_tag=C9E96_RS10465;product=NADH-quinone oxidoreductase subunit NuoB;protein_id=WP_000386728.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	5711	7513	.	+	.	ID=gene-C9E96_RS10470;Name=nuoC;gbkey=Gene;gene=nuoC;gene_biotype=protein_coding;locus_tag=C9E96_RS10470;old_locus_tag=C9E96_10700
NZ_PYJX01000121.1	Protein Homology	CDS	5711	7513	.	+	0	ID=cds-WP_000247855.1;Parent=gene-C9E96_RS10470;Dbxref=GenBank:WP_000247855.1;Name=WP_000247855.1;Ontology_term=GO:0048038,GO:0050136,GO:0051287,GO:0030964;gbkey=CDS;gene=nuoC;go_component=NADH dehydrogenase complex|0030964||IEA;go_function=quinone binding|0048038||IEA,NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461268.1;locus_tag=C9E96_RS10470;product=NADH-quinone oxidoreductase subunit C/D;protein_id=WP_000247855.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	7516	8016	.	+	.	ID=gene-C9E96_RS10475;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=C9E96_RS10475;old_locus_tag=C9E96_10705
NZ_PYJX01000121.1	Protein Homology	CDS	7516	8016	.	+	0	ID=cds-WP_000545038.1;Parent=gene-C9E96_RS10475;Dbxref=GenBank:WP_000545038.1;Name=WP_000545038.1;Ontology_term=GO:0016491;gbkey=CDS;gene=nuoE;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461267.1;locus_tag=C9E96_RS10475;product=NADH-quinone oxidoreductase subunit NuoE;protein_id=WP_000545038.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	8013	9350	.	+	.	ID=gene-C9E96_RS10480;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=C9E96_RS10480;old_locus_tag=C9E96_10710
NZ_PYJX01000121.1	Protein Homology	CDS	8013	9350	.	+	0	ID=cds-WP_000800048.1;Parent=gene-C9E96_RS10480;Dbxref=GenBank:WP_000800048.1;Name=WP_000800048.1;Ontology_term=GO:0008137,GO:0051539;gbkey=CDS;gene=nuoF;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461266.1;locus_tag=C9E96_RS10480;product=NADH-quinone oxidoreductase subunit NuoF;protein_id=WP_000800048.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	9381	12107	.	+	.	ID=gene-C9E96_RS10485;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=C9E96_RS10485;old_locus_tag=C9E96_10715
NZ_PYJX01000121.1	Protein Homology	CDS	9381	12107	.	+	0	ID=cds-WP_001518099.1;Parent=gene-C9E96_RS10485;Dbxref=GenBank:WP_001518099.1;Name=WP_001518099.1;Ontology_term=GO:0006120,GO:0050136,GO:0051536;gbkey=CDS;gene=nuoG;go_function=NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=mitochondrial electron transport%2C NADH to ubiquinone|0006120||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311194.2;locus_tag=C9E96_RS10485;product=NADH-quinone oxidoreductase subunit NuoG;protein_id=WP_001518099.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	12104	13081	.	+	.	ID=gene-C9E96_RS10490;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=C9E96_RS10490;old_locus_tag=C9E96_10720
NZ_PYJX01000121.1	Protein Homology	CDS	12104	13081	.	+	0	ID=cds-WP_000118515.1;Parent=gene-C9E96_RS10490;Dbxref=GenBank:WP_000118515.1;Name=WP_000118515.1;gbkey=CDS;gene=nuoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015875065.1;locus_tag=C9E96_RS10490;product=NADH-quinone oxidoreductase subunit NuoH;protein_id=WP_000118515.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	13096	13638	.	+	.	ID=gene-C9E96_RS10495;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=C9E96_RS10495;old_locus_tag=C9E96_10725
NZ_PYJX01000121.1	Protein Homology	CDS	13096	13638	.	+	0	ID=cds-WP_000172747.1;Parent=gene-C9E96_RS10495;Dbxref=GenBank:WP_000172747.1;Name=WP_000172747.1;Ontology_term=GO:0016651,GO:0051539,GO:0016020;gbkey=CDS;gene=nuoI;go_component=membrane|0016020||IEA;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015959823.1;locus_tag=C9E96_RS10495;product=NADH-quinone oxidoreductase subunit NuoI;protein_id=WP_000172747.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	13649	14203	.	+	.	ID=gene-C9E96_RS10500;Name=nuoJ;gbkey=Gene;gene=nuoJ;gene_biotype=protein_coding;locus_tag=C9E96_RS10500;old_locus_tag=C9E96_10730
NZ_PYJX01000121.1	Protein Homology	CDS	13649	14203	.	+	0	ID=cds-WP_080203972.1;Parent=gene-C9E96_RS10500;Dbxref=GenBank:WP_080203972.1;Name=WP_080203972.1;Ontology_term=GO:0008137;gbkey=CDS;gene=nuoJ;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461262.1;locus_tag=C9E96_RS10500;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_080203972.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	14200	14502	.	+	.	ID=gene-C9E96_RS10505;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=C9E96_RS10505;old_locus_tag=C9E96_10735
NZ_PYJX01000121.1	Protein Homology	CDS	14200	14502	.	+	0	ID=cds-WP_000612687.1;Parent=gene-C9E96_RS10505;Dbxref=GenBank:WP_000612687.1;Name=WP_000612687.1;Ontology_term=GO:0042773,GO:0016651;gbkey=CDS;gene=nuoK;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006683663.1;locus_tag=C9E96_RS10505;product=NADH-quinone oxidoreductase subunit NuoK;protein_id=WP_000612687.1;transl_table=11
NZ_PYJX01000121.1	RefSeq	gene	14499	14670	.	+	.	ID=gene-C9E96_RS24230;Name=C9E96_RS24230;end_range=14670,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24230;partial=true
NZ_PYJX01000121.1	Protein Homology	CDS	14499	14670	.	+	0	ID=cds-WP_167852888.1;Parent=gene-C9E96_RS24230;Dbxref=GenBank:WP_167852888.1;Name=WP_167852888.1;end_range=14670,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461260.1;locus_tag=C9E96_RS24230;partial=true;product=hypothetical protein;protein_id=WP_167852888.1;transl_table=11
##sequence-region NZ_PYJX01000039.1 1 63811
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000039.1	RefSeq	region	1	63811	.	+	.	ID=NZ_PYJX01000039.1:1..63811;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000039.1	RefSeq	pseudogene	1	801	.	+	.	ID=gene-C9E96_RS02515;Name=C9E96_RS02515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS02515;old_locus_tag=C9E96_02555;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000039.1	Protein Homology	CDS	1	801	.	+	0	ID=cds-C9E96_RS02515;Parent=gene-C9E96_RS02515;Note=internal stop%3B incomplete%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461075.1;locus_tag=C9E96_RS02515;partial=true;product=ATP-binding protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	798	1520	.	+	.	ID=gene-C9E96_RS02520;Name=baeR;gbkey=Gene;gene=baeR;gene_biotype=protein_coding;locus_tag=C9E96_RS02520;old_locus_tag=C9E96_02560
NZ_PYJX01000039.1	Protein Homology	CDS	798	1520	.	+	0	ID=cds-WP_000137854.1;Parent=gene-C9E96_RS02520;Dbxref=GenBank:WP_000137854.1;Name=WP_000137854.1;Ontology_term=GO:0000160,GO:0003677;gbkey=CDS;gene=baeR;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461076.1;locus_tag=C9E96_RS02520;product=two-component system response regulator BaeR;protein_id=WP_000137854.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	1789	2991	.	+	.	ID=gene-C9E96_RS02530;Name=C9E96_RS02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02530;old_locus_tag=C9E96_02570
NZ_PYJX01000039.1	Protein Homology	CDS	1789	2991	.	+	0	ID=cds-WP_000141061.1;Parent=gene-C9E96_RS02530;Dbxref=GenBank:WP_000141061.1;Name=WP_000141061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000141078.1;locus_tag=C9E96_RS02530;product=hypothetical protein;protein_id=WP_000141061.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	2991	3707	.	+	.	ID=gene-C9E96_RS02535;Name=C9E96_RS02535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02535;old_locus_tag=C9E96_02575
NZ_PYJX01000039.1	Protein Homology	CDS	2991	3707	.	+	0	ID=cds-WP_000498587.1;Parent=gene-C9E96_RS02535;Dbxref=GenBank:WP_000498587.1;Name=WP_000498587.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461078.1;locus_tag=C9E96_RS02535;product=DUF1266 domain-containing protein;protein_id=WP_000498587.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	3718	5829	.	+	.	ID=gene-C9E96_RS02540;Name=C9E96_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02540;old_locus_tag=C9E96_02580
NZ_PYJX01000039.1	Protein Homology	CDS	3718	5829	.	+	0	ID=cds-WP_135493811.1;Parent=gene-C9E96_RS02540;Dbxref=GenBank:WP_135493811.1;Name=WP_135493811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461079.1;locus_tag=C9E96_RS02540;product=DUF4034 domain-containing protein;protein_id=WP_135493811.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	5945	7306	.	+	.	ID=gene-C9E96_RS02545;Name=yegQ;gbkey=Gene;gene=yegQ;gene_biotype=protein_coding;locus_tag=C9E96_RS02545;old_locus_tag=C9E96_02585
NZ_PYJX01000039.1	Protein Homology	CDS	5945	7306	.	+	0	ID=cds-WP_001517981.1;Parent=gene-C9E96_RS02545;Dbxref=GenBank:WP_001517981.1;Name=WP_001517981.1;gbkey=CDS;gene=yegQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461080.1;locus_tag=C9E96_RS02545;product=tRNA 5-hydroxyuridine modification protein YegQ;protein_id=WP_001517981.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	7757	8803	.	+	.	ID=gene-C9E96_RS02550;Name=sseK2;gbkey=Gene;gene=sseK2;gene_biotype=protein_coding;locus_tag=C9E96_RS02550;old_locus_tag=C9E96_02590
NZ_PYJX01000039.1	Protein Homology	CDS	7757	8803	.	+	0	ID=cds-WP_023994319.1;Parent=gene-C9E96_RS02550;Dbxref=GenBank:WP_023994319.1;Name=WP_023994319.1;gbkey=CDS;gene=sseK2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461081.1;locus_tag=C9E96_RS02550;product=type III secretion system effector arginine glycosyltransferase SseK2;protein_id=WP_023994319.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	8839	9255	.	-	.	ID=gene-C9E96_RS02555;Name=C9E96_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02555;old_locus_tag=C9E96_02595
NZ_PYJX01000039.1	Protein Homology	CDS	8839	9255	.	-	0	ID=cds-WP_001540404.1;Parent=gene-C9E96_RS02555;Dbxref=GenBank:WP_001540404.1;Name=WP_001540404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461082.1;locus_tag=C9E96_RS02555;product=CesT family type III secretion system chaperone;protein_id=WP_001540404.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	9377	9712	.	-	.	ID=gene-C9E96_RS02560;Name=steD;gbkey=Gene;gene=steD;gene_biotype=protein_coding;locus_tag=C9E96_RS02560;old_locus_tag=C9E96_02600
NZ_PYJX01000039.1	Protein Homology	CDS	9377	9712	.	-	0	ID=cds-WP_001533113.1;Parent=gene-C9E96_RS02560;Dbxref=GenBank:WP_001533113.1;Name=WP_001533113.1;gbkey=CDS;gene=steD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461083.1;locus_tag=C9E96_RS02560;product=type III secretion system effector SteD;protein_id=WP_001533113.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	10274	11173	.	+	.	ID=gene-C9E96_RS02565;Name=yegS;gbkey=Gene;gene=yegS;gene_biotype=protein_coding;locus_tag=C9E96_RS02565;old_locus_tag=C9E96_02605
NZ_PYJX01000039.1	Protein Homology	CDS	10274	11173	.	+	0	ID=cds-WP_001273393.1;Parent=gene-C9E96_RS02565;Dbxref=GenBank:WP_001273393.1;Name=WP_001273393.1;Ontology_term=GO:0001727,GO:0046872;gbkey=CDS;gene=yegS;go_function=lipid kinase activity|0001727||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461084.1;locus_tag=C9E96_RS02565;product=lipid kinase YegS;protein_id=WP_001273393.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	11226	12278	.	-	.	ID=gene-C9E96_RS02570;Name=fbaB;gbkey=Gene;gene=fbaB;gene_biotype=protein_coding;locus_tag=C9E96_RS02570;old_locus_tag=C9E96_02610
NZ_PYJX01000039.1	Protein Homology	CDS	11226	12278	.	-	0	ID=cds-WP_000129590.1;Parent=gene-C9E96_RS02570;Dbxref=GenBank:WP_000129590.1;Name=WP_000129590.1;Ontology_term=GO:0004332;gbkey=CDS;gene=fbaB;go_function=fructose-bisphosphate aldolase activity|0004332||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006820796.1;locus_tag=C9E96_RS02570;product=class I fructose-bisphosphate aldolase;protein_id=WP_000129590.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	12532	13803	.	+	.	ID=gene-C9E96_RS02575;Name=C9E96_RS02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02575;old_locus_tag=C9E96_02615
NZ_PYJX01000039.1	Protein Homology	CDS	12532	13803	.	+	0	ID=cds-WP_000858692.1;Parent=gene-C9E96_RS02575;Dbxref=GenBank:WP_000858692.1;Name=WP_000858692.1;Ontology_term=GO:0015858,GO:0005337,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=nucleoside transmembrane transporter activity|0005337||IEA;go_process=nucleoside transport|0015858||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461086.1;locus_tag=C9E96_RS02575;product=nucleoside permease;protein_id=WP_000858692.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	13800	14804	.	+	.	ID=gene-C9E96_RS02580;Name=C9E96_RS02580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02580;old_locus_tag=C9E96_02620
NZ_PYJX01000039.1	Protein Homology	CDS	13800	14804	.	+	0	ID=cds-WP_000642793.1;Parent=gene-C9E96_RS02580;Dbxref=GenBank:WP_000642793.1;Name=WP_000642793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461087.1;locus_tag=C9E96_RS02580;product=ADP-ribosylglycohydrolase family protein;protein_id=WP_000642793.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	14801	15766	.	+	.	ID=gene-C9E96_RS02585;Name=C9E96_RS02585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02585;old_locus_tag=C9E96_02625
NZ_PYJX01000039.1	Protein Homology	CDS	14801	15766	.	+	0	ID=cds-WP_080203700.1;Parent=gene-C9E96_RS02585;Dbxref=GenBank:WP_080203700.1;Name=WP_080203700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461088.1;locus_tag=C9E96_RS02585;product=PfkB family carbohydrate kinase;protein_id=WP_080203700.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	15740	16486	.	-	.	ID=gene-C9E96_RS02590;Name=C9E96_RS02590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02590;old_locus_tag=C9E96_02630
NZ_PYJX01000039.1	Protein Homology	CDS	15740	16486	.	-	0	ID=cds-WP_000434062.1;Parent=gene-C9E96_RS02590;Dbxref=GenBank:WP_000434062.1;Name=WP_000434062.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461089.1;locus_tag=C9E96_RS02590;product=GntR family transcriptional regulator;protein_id=WP_000434062.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	16522	17322	.	-	.	ID=gene-C9E96_RS02595;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=C9E96_RS02595;old_locus_tag=C9E96_02635
NZ_PYJX01000039.1	Protein Homology	CDS	16522	17322	.	-	0	ID=cds-WP_001528513.1;Parent=gene-C9E96_RS02595;Dbxref=GenBank:WP_001528513.1;Name=WP_001528513.1;Ontology_term=GO:0009228,GO:0008902,GO:0008972;gbkey=CDS;gene=thiD;go_function=hydroxymethylpyrimidine kinase activity|0008902||IEA,phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461090.1;locus_tag=C9E96_RS02595;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=WP_001528513.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	17309	18106	.	-	.	ID=gene-C9E96_RS02600;Name=thiM;gbkey=Gene;gene=thiM;gene_biotype=protein_coding;locus_tag=C9E96_RS02600;old_locus_tag=C9E96_02640
NZ_PYJX01000039.1	Protein Homology	CDS	17309	18106	.	-	0	ID=cds-WP_080203701.1;Parent=gene-C9E96_RS02600;Dbxref=GenBank:WP_080203701.1;Name=WP_080203701.1;Ontology_term=GO:0009228,GO:0004417;gbkey=CDS;gene=thiM;go_function=hydroxyethylthiazole kinase activity|0004417||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461091.1;locus_tag=C9E96_RS02600;product=hydroxyethylthiazole kinase;protein_id=WP_080203701.1;transl_table=11
NZ_PYJX01000039.1	cmsearch	riboswitch	18138	18234	.	-	.	ID=id-NZ_PYJX01000039.1:18138..18234;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYJX01000039.1	RefSeq	gene	18516	18830	.	+	.	ID=gene-C9E96_RS02605;Name=rcnB;gbkey=Gene;gene=rcnB;gene_biotype=protein_coding;locus_tag=C9E96_RS02605;old_locus_tag=C9E96_02645
NZ_PYJX01000039.1	Protein Homology	CDS	18516	18830	.	+	0	ID=cds-WP_000837534.1;Parent=gene-C9E96_RS02605;Dbxref=GenBank:WP_000837534.1;Name=WP_000837534.1;gbkey=CDS;gene=rcnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461092.1;locus_tag=C9E96_RS02605;product=Ni(II)/Co(II) efflux transporter accessory subunit RcnB;protein_id=WP_000837534.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	18872	19879	.	-	.	ID=gene-C9E96_RS02610;Name=C9E96_RS02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02610;old_locus_tag=C9E96_02650
NZ_PYJX01000039.1	Protein Homology	CDS	18872	19879	.	-	0	ID=cds-WP_023993388.1;Parent=gene-C9E96_RS02610;Dbxref=GenBank:WP_023993388.1;Name=WP_023993388.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001269814.1;locus_tag=C9E96_RS02610;product=fimbrial protein;protein_id=WP_023993388.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	19888	22368	.	-	.	ID=gene-C9E96_RS02615;Name=C9E96_RS02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02615;old_locus_tag=C9E96_02655
NZ_PYJX01000039.1	Protein Homology	CDS	19888	22368	.	-	0	ID=cds-WP_000945356.1;Parent=gene-C9E96_RS02615;Dbxref=GenBank:WP_000945356.1;Name=WP_000945356.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310942.1;locus_tag=C9E96_RS02615;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_000945356.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	22381	23061	.	-	.	ID=gene-C9E96_RS02620;Name=C9E96_RS02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02620;old_locus_tag=C9E96_02660
NZ_PYJX01000039.1	Protein Homology	CDS	22381	23061	.	-	0	ID=cds-WP_000734580.1;Parent=gene-C9E96_RS02620;Dbxref=GenBank:WP_000734580.1;Name=WP_000734580.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000734581.1;locus_tag=C9E96_RS02620;product=fimbria/pilus periplasmic chaperone;protein_id=WP_000734580.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	23108	23653	.	-	.	ID=gene-C9E96_RS02625;Name=C9E96_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02625;old_locus_tag=C9E96_02665
NZ_PYJX01000039.1	Protein Homology	CDS	23108	23653	.	-	0	ID=cds-WP_023993389.1;Parent=gene-C9E96_RS02625;Dbxref=GenBank:WP_023993389.1;Name=WP_023993389.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000830494.1;locus_tag=C9E96_RS02625;product=fimbrial protein;protein_id=WP_023993389.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	23932	24213	.	-	.	ID=gene-C9E96_RS02630;Name=C9E96_RS02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02630;old_locus_tag=C9E96_02670
NZ_PYJX01000039.1	Protein Homology	CDS	23932	24213	.	-	0	ID=cds-WP_001543027.1;Parent=gene-C9E96_RS02630;Dbxref=GenBank:WP_001543027.1;Name=WP_001543027.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000760407.1;locus_tag=C9E96_RS02630;product=DUF2574 family protein;protein_id=WP_001543027.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	24480	25589	.	-	.	ID=gene-C9E96_RS02635;Name=apbC;gbkey=Gene;gene=apbC;gene_biotype=protein_coding;locus_tag=C9E96_RS02635;old_locus_tag=C9E96_02675
NZ_PYJX01000039.1	Protein Homology	CDS	24480	25589	.	-	0	ID=cds-WP_001005426.1;Parent=gene-C9E96_RS02635;Dbxref=GenBank:WP_001005426.1;Name=WP_001005426.1;Ontology_term=GO:0016226,GO:0005524,GO:0016887,GO:0051536;gbkey=CDS;gene=apbC;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461098.1;locus_tag=C9E96_RS02635;product=iron-sulfur cluster carrier protein ApbC;protein_id=WP_001005426.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	25754	27787	.	+	.	ID=gene-C9E96_RS02640;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=C9E96_RS02640;old_locus_tag=C9E96_02680
NZ_PYJX01000039.1	Protein Homology	CDS	25754	27787	.	+	0	ID=cds-WP_135493813.1;Parent=gene-C9E96_RS02640;Dbxref=GenBank:WP_135493813.1;Name=WP_135493813.1;Ontology_term=GO:0006431,GO:0000166,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=nucleotide binding|0000166||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461099.1;locus_tag=C9E96_RS02640;product=methionine--tRNA ligase;protein_id=WP_135493813.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	28028	28486	.	+	.	ID=gene-C9E96_RS02645;Name=C9E96_RS02645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02645;old_locus_tag=C9E96_02685
NZ_PYJX01000039.1	Protein Homology	CDS	28028	28486	.	+	0	ID=cds-WP_000703137.1;Parent=gene-C9E96_RS02645;Dbxref=GenBank:WP_000703137.1;Name=WP_000703137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461100.1;locus_tag=C9E96_RS02645;product=YehR family lipoprotein;protein_id=WP_000703137.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	28658	29188	.	+	.	ID=gene-C9E96_RS02650;Name=C9E96_RS02650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02650;old_locus_tag=C9E96_02690
NZ_PYJX01000039.1	Protein Homology	CDS	28658	29188	.	+	0	ID=cds-WP_001197951.1;Parent=gene-C9E96_RS02650;Dbxref=GenBank:WP_001197951.1;Name=WP_001197951.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461101.1;locus_tag=C9E96_RS02650;product=YehR family lipoprotein;protein_id=WP_001197951.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	29245	29712	.	-	.	ID=gene-C9E96_RS02655;Name=C9E96_RS02655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02655;old_locus_tag=C9E96_02695
NZ_PYJX01000039.1	Protein Homology	CDS	29245	29712	.	-	0	ID=cds-WP_135493815.1;Parent=gene-C9E96_RS02655;Dbxref=GenBank:WP_135493815.1;Name=WP_135493815.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461102.1;locus_tag=C9E96_RS02655;product=DUF1456 family protein;protein_id=WP_135493815.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	29759	30478	.	-	.	ID=gene-C9E96_RS02660;Name=btsR;gbkey=Gene;gene=btsR;gene_biotype=protein_coding;gene_synonym=yehT;locus_tag=C9E96_RS02660;old_locus_tag=C9E96_02700
NZ_PYJX01000039.1	Protein Homology	CDS	29759	30478	.	-	0	ID=cds-WP_000598637.1;Parent=gene-C9E96_RS02660;Dbxref=GenBank:WP_000598637.1;Name=WP_000598637.1;gbkey=CDS;gene=btsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461103.1;locus_tag=C9E96_RS02660;product=two-component system response regulator BtsR;protein_id=WP_000598637.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	30475	32160	.	-	.	ID=gene-C9E96_RS02665;Name=C9E96_RS02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02665;old_locus_tag=C9E96_02705
NZ_PYJX01000039.1	Protein Homology	CDS	30475	32160	.	-	0	ID=cds-WP_000272850.1;Parent=gene-C9E96_RS02665;Dbxref=GenBank:WP_000272850.1;Name=WP_000272850.1;Ontology_term=GO:0000160,GO:0071555,GO:0000155,GO:0004673,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461104.1;locus_tag=C9E96_RS02665;product=sensor histidine kinase;protein_id=WP_000272850.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	32383	33114	.	+	.	ID=gene-C9E96_RS02670;Name=mlrA;gbkey=Gene;gene=mlrA;gene_biotype=protein_coding;locus_tag=C9E96_RS02670;old_locus_tag=C9E96_02710
NZ_PYJX01000039.1	Protein Homology	CDS	32383	33114	.	+	0	ID=cds-WP_001240418.1;Parent=gene-C9E96_RS02670;Dbxref=GenBank:WP_001240418.1;Name=WP_001240418.1;gbkey=CDS;gene=mlrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461105.1;locus_tag=C9E96_RS02670;product=HTH-type transcriptional regulator MlrA;protein_id=WP_001240418.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	33174	33281	.	+	.	ID=gene-C9E96_RS02675;Name=C9E96_RS02675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02675;old_locus_tag=C9E96_02715
NZ_PYJX01000039.1	Protein Homology	CDS	33174	33281	.	+	0	ID=cds-WP_023993392.1;Parent=gene-C9E96_RS02675;Dbxref=GenBank:WP_023993392.1;Name=WP_023993392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461106.1;locus_tag=C9E96_RS02675;product=protein YohO;protein_id=WP_023993392.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	33262	33993	.	-	.	ID=gene-C9E96_RS02680;Name=C9E96_RS02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02680;old_locus_tag=C9E96_02720
NZ_PYJX01000039.1	Protein Homology	CDS	33262	33993	.	-	0	ID=cds-WP_000824854.1;Parent=gene-C9E96_RS02680;Dbxref=GenBank:WP_000824854.1;Name=WP_000824854.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461107.1;locus_tag=C9E96_RS02680;product=ABC transporter permease;protein_id=WP_000824854.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	33977	34924	.	-	.	ID=gene-C9E96_RS02685;Name=C9E96_RS02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02685;old_locus_tag=C9E96_02725
NZ_PYJX01000039.1	Protein Homology	CDS	33977	34924	.	-	0	ID=cds-WP_000569166.1;Parent=gene-C9E96_RS02685;Dbxref=GenBank:WP_000569166.1;Name=WP_000569166.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461108.1;locus_tag=C9E96_RS02685;product=ABC transporter ATP-binding protein;protein_id=WP_000569166.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	34917	36086	.	-	.	ID=gene-C9E96_RS02690;Name=C9E96_RS02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02690;old_locus_tag=C9E96_02730
NZ_PYJX01000039.1	Protein Homology	CDS	34917	36086	.	-	0	ID=cds-WP_023993393.1;Parent=gene-C9E96_RS02690;Dbxref=GenBank:WP_023993393.1;Name=WP_023993393.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461109.1;locus_tag=C9E96_RS02690;product=ABC transporter permease;protein_id=WP_023993393.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	36090	37007	.	-	.	ID=gene-C9E96_RS02695;Name=osmF;gbkey=Gene;gene=osmF;gene_biotype=protein_coding;locus_tag=C9E96_RS02695;old_locus_tag=C9E96_02735
NZ_PYJX01000039.1	Protein Homology	CDS	36090	37007	.	-	0	ID=cds-WP_135493817.1;Parent=gene-C9E96_RS02695;Dbxref=GenBank:WP_135493817.1;Name=WP_135493817.1;Ontology_term=GO:0031460,GO:0022857;gbkey=CDS;gene=osmF;go_function=transmembrane transporter activity|0022857||IEA;go_process=glycine betaine transport|0031460||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461110.1;locus_tag=C9E96_RS02695;product=glycine betaine ABC transporter substrate-binding protein OsmF;protein_id=WP_135493817.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	37188	39485	.	-	.	ID=gene-C9E96_RS02700;Name=bglX;gbkey=Gene;gene=bglX;gene_biotype=protein_coding;locus_tag=C9E96_RS02700;old_locus_tag=C9E96_02740
NZ_PYJX01000039.1	Protein Homology	CDS	37188	39485	.	-	0	ID=cds-WP_000871554.1;Parent=gene-C9E96_RS02700;Dbxref=GenBank:WP_000871554.1;Name=WP_000871554.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=bglX;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461111.1;locus_tag=C9E96_RS02700;product=beta-glucosidase BglX;protein_id=WP_000871554.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	39752	41482	.	+	.	ID=gene-C9E96_RS02705;Name=dld;gbkey=Gene;gene=dld;gene_biotype=protein_coding;locus_tag=C9E96_RS02705;old_locus_tag=C9E96_02745
NZ_PYJX01000039.1	Protein Homology	CDS	39752	41482	.	+	0	ID=cds-WP_000095234.1;Parent=gene-C9E96_RS02705;Dbxref=GenBank:WP_000095234.1;Name=WP_000095234.1;Ontology_term=GO:0006089,GO:0016901;gbkey=CDS;gene=dld;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C quinone or similar compound as acceptor|0016901||IEA;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461112.1;locus_tag=C9E96_RS02705;product=D-lactate dehydrogenase;protein_id=WP_000095234.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	41540	42487	.	-	.	ID=gene-C9E96_RS02710;Name=pbpG;gbkey=Gene;gene=pbpG;gene_biotype=protein_coding;locus_tag=C9E96_RS02710;old_locus_tag=C9E96_02750
NZ_PYJX01000039.1	Protein Homology	CDS	41540	42487	.	-	0	ID=cds-WP_135493819.1;Parent=gene-C9E96_RS02710;Dbxref=GenBank:WP_135493819.1;Name=WP_135493819.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=pbpG;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461113.1;locus_tag=C9E96_RS02710;product=D-alanyl-D-alanine endopeptidase;protein_id=WP_135493819.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	42653	43240	.	-	.	ID=gene-C9E96_RS02715;Name=C9E96_RS02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02715;old_locus_tag=C9E96_02760
NZ_PYJX01000039.1	Protein Homology	CDS	42653	43240	.	-	0	ID=cds-WP_001017057.1;Parent=gene-C9E96_RS02715;Dbxref=GenBank:WP_001017057.1;Name=WP_001017057.1;Ontology_term=GO:0016192,GO:0031267;gbkey=CDS;go_function=small GTPase binding|0031267||IEA;go_process=vesicle-mediated transport|0016192||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014170891.1;locus_tag=C9E96_RS02715;product=Yip1 family protein;protein_id=WP_001017057.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	43399	43968	.	+	.	ID=gene-C9E96_RS02720;Name=C9E96_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02720;old_locus_tag=C9E96_02765
NZ_PYJX01000039.1	Protein Homology	CDS	43399	43968	.	+	0	ID=cds-WP_023242136.1;Parent=gene-C9E96_RS02720;Dbxref=GenBank:WP_023242136.1;Name=WP_023242136.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001669449.1;locus_tag=C9E96_RS02720;product=DedA family protein;protein_id=WP_023242136.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	44017	44778	.	-	.	ID=gene-C9E96_RS02725;Name=C9E96_RS02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02725;old_locus_tag=C9E96_02770
NZ_PYJX01000039.1	Protein Homology	CDS	44017	44778	.	-	0	ID=cds-WP_000169608.1;Parent=gene-C9E96_RS02725;Dbxref=GenBank:WP_000169608.1;Name=WP_000169608.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461116.1;locus_tag=C9E96_RS02725;product=SDR family oxidoreductase;protein_id=WP_000169608.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	44844	46280	.	-	.	ID=gene-C9E96_RS02730;Name=mdtQ;gbkey=Gene;gene=mdtQ;gene_biotype=protein_coding;locus_tag=C9E96_RS02730;old_locus_tag=C9E96_02775
NZ_PYJX01000039.1	Protein Homology	CDS	44844	46280	.	-	0	ID=cds-WP_001081457.1;Parent=gene-C9E96_RS02730;Dbxref=GenBank:WP_001081457.1;Name=WP_001081457.1;Ontology_term=GO:0055085,GO:0015562,GO:0016020;gbkey=CDS;gene=mdtQ;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461117.1;locus_tag=C9E96_RS02730;product=multidrug resistance outer membrane protein MdtQ;protein_id=WP_001081457.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	46598	46681	.	+	.	ID=gene-C9E96_RS02735;Name=yohP;gbkey=Gene;gene=yohP;gene_biotype=protein_coding;locus_tag=C9E96_RS02735;old_locus_tag=C9E96_02780
NZ_PYJX01000039.1	Protein Homology	CDS	46598	46681	.	+	0	ID=cds-WP_000698460.1;Parent=gene-C9E96_RS02735;Dbxref=GenBank:WP_000698460.1;Name=WP_000698460.1;gbkey=CDS;gene=yohP;inference=COORDINATES: protein motif:HMM:NF011345.0;locus_tag=C9E96_RS02735;product=small membrane protein YohP;protein_id=WP_000698460.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	46739	47677	.	-	.	ID=gene-C9E96_RS02740;Name=dusC;gbkey=Gene;gene=dusC;gene_biotype=protein_coding;locus_tag=C9E96_RS02740;old_locus_tag=C9E96_02785
NZ_PYJX01000039.1	Protein Homology	CDS	46739	47677	.	-	0	ID=cds-WP_080203702.1;Parent=gene-C9E96_RS02740;Dbxref=GenBank:WP_080203702.1;Name=WP_080203702.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusC;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461119.1;locus_tag=C9E96_RS02740;product=tRNA dihydrouridine(16) synthase DusC;protein_id=WP_080203702.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	47786	48979	.	-	.	ID=gene-C9E96_RS02745;Name=C9E96_RS02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02745;old_locus_tag=C9E96_02790
NZ_PYJX01000039.1	Protein Homology	CDS	47786	48979	.	-	0	ID=cds-WP_000150103.1;Parent=gene-C9E96_RS02745;Dbxref=GenBank:WP_000150103.1;Name=WP_000150103.1;Ontology_term=GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461120.1;locus_tag=C9E96_RS02745;product=3-hydroxybenzoate 6-monooxygenase;protein_id=WP_000150103.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	48994	49638	.	-	.	ID=gene-C9E96_RS02750;Name=maiA;gbkey=Gene;gene=maiA;gene_biotype=protein_coding;locus_tag=C9E96_RS02750;old_locus_tag=C9E96_02795
NZ_PYJX01000039.1	Protein Homology	CDS	48994	49638	.	-	0	ID=cds-WP_000781183.1;Parent=gene-C9E96_RS02750;Dbxref=GenBank:WP_000781183.1;Name=WP_000781183.1;Ontology_term=GO:0006559,GO:0006572,GO:0016034,GO:0005737;gbkey=CDS;gene=maiA;go_component=cytoplasm|0005737||IEA;go_function=maleylacetoacetate isomerase activity|0016034||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA,tyrosine catabolic process|0006572||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461121.1;locus_tag=C9E96_RS02750;product=maleylacetoacetate isomerase;protein_id=WP_000781183.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	49647	50348	.	-	.	ID=gene-C9E96_RS02755;Name=C9E96_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02755;old_locus_tag=C9E96_02800
NZ_PYJX01000039.1	Protein Homology	CDS	49647	50348	.	-	0	ID=cds-WP_000170621.1;Parent=gene-C9E96_RS02755;Dbxref=GenBank:WP_000170621.1;Name=WP_000170621.1;Ontology_term=GO:0003824,GO:0016787;gbkey=CDS;go_function=catalytic activity|0003824||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461122.1;locus_tag=C9E96_RS02755;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_000170621.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	50364	51401	.	-	.	ID=gene-C9E96_RS02760;Name=gtdA;gbkey=Gene;gene=gtdA;gene_biotype=protein_coding;locus_tag=C9E96_RS02760;old_locus_tag=C9E96_02805
NZ_PYJX01000039.1	Protein Homology	CDS	50364	51401	.	-	0	ID=cds-WP_001289857.1;Parent=gene-C9E96_RS02760;Dbxref=GenBank:WP_001289857.1;Name=WP_001289857.1;Ontology_term=GO:0047922;gbkey=CDS;gene=gtdA;go_function=gentisate 1%2C2-dioxygenase activity|0047922||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461123.1;locus_tag=C9E96_RS02760;product=gentisate 1%2C2-dioxygenase;protein_id=WP_001289857.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	51413	52771	.	-	.	ID=gene-C9E96_RS02765;Name=mhbT;gbkey=Gene;gene=mhbT;gene_biotype=protein_coding;locus_tag=C9E96_RS02765;old_locus_tag=C9E96_02810
NZ_PYJX01000039.1	Protein Homology	CDS	51413	52771	.	-	0	ID=cds-WP_000194214.1;Parent=gene-C9E96_RS02765;Dbxref=GenBank:WP_000194214.1;Name=WP_000194214.1;gbkey=CDS;gene=mhbT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461124.1;locus_tag=C9E96_RS02765;product=3-hydroxybenzoate transporter MhbT;protein_id=WP_000194214.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	52897	53805	.	+	.	ID=gene-C9E96_RS02770;Name=C9E96_RS02770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02770;old_locus_tag=C9E96_02815
NZ_PYJX01000039.1	Protein Homology	CDS	52897	53805	.	+	0	ID=cds-WP_000024658.1;Parent=gene-C9E96_RS02770;Dbxref=GenBank:WP_000024658.1;Name=WP_000024658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461125.1;locus_tag=C9E96_RS02770;product=LysR substrate-binding domain-containing protein;protein_id=WP_000024658.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	53937	54335	.	+	.	ID=gene-C9E96_RS02775;Name=C9E96_RS02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02775;old_locus_tag=C9E96_02820
NZ_PYJX01000039.1	Protein Homology	CDS	53937	54335	.	+	0	ID=cds-WP_000045719.1;Parent=gene-C9E96_RS02775;Dbxref=GenBank:WP_000045719.1;Name=WP_000045719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461126.1;locus_tag=C9E96_RS02775;product=CidA/LrgA family protein;protein_id=WP_000045719.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	54332	55027	.	+	.	ID=gene-C9E96_RS02780;Name=C9E96_RS02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02780;old_locus_tag=C9E96_02825
NZ_PYJX01000039.1	Protein Homology	CDS	54332	55027	.	+	0	ID=cds-WP_135493821.1;Parent=gene-C9E96_RS02780;Dbxref=GenBank:WP_135493821.1;Name=WP_135493821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461127.1;locus_tag=C9E96_RS02780;product=CidB/LrgB family autolysis modulator;protein_id=WP_135493821.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	55181	56065	.	+	.	ID=gene-C9E96_RS02785;Name=cdd;gbkey=Gene;gene=cdd;gene_biotype=protein_coding;locus_tag=C9E96_RS02785;old_locus_tag=C9E96_02830
NZ_PYJX01000039.1	Protein Homology	CDS	55181	56065	.	+	0	ID=cds-WP_041112656.1;Parent=gene-C9E96_RS02785;Dbxref=GenBank:WP_041112656.1;Name=WP_041112656.1;Ontology_term=GO:0009972,GO:0004126,GO:0008270;gbkey=CDS;gene=cdd;go_function=cytidine deaminase activity|0004126||IEA,zinc ion binding|0008270||IEA;go_process=cytidine deamination|0009972||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461128.1;locus_tag=C9E96_RS02785;product=cytidine deaminase;protein_id=WP_041112656.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	56242	56961	.	+	.	ID=gene-C9E96_RS02790;Name=sanA;gbkey=Gene;gene=sanA;gene_biotype=protein_coding;locus_tag=C9E96_RS02790;old_locus_tag=C9E96_02835
NZ_PYJX01000039.1	Protein Homology	CDS	56242	56961	.	+	0	ID=cds-WP_000920081.1;Parent=gene-C9E96_RS02790;Dbxref=GenBank:WP_000920081.1;Name=WP_000920081.1;gbkey=CDS;gene=sanA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461129.1;locus_tag=C9E96_RS02790;product=outer membrane permeability protein SanA;protein_id=WP_000920081.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	56958	57203	.	+	.	ID=gene-C9E96_RS02795;Name=C9E96_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02795;old_locus_tag=C9E96_02840
NZ_PYJX01000039.1	Protein Homology	CDS	56958	57203	.	+	0	ID=cds-WP_000605187.1;Parent=gene-C9E96_RS02795;Dbxref=GenBank:WP_000605187.1;Name=WP_000605187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461130.1;locus_tag=C9E96_RS02795;product=DUF2542 family protein;protein_id=WP_000605187.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	57408	58649	.	+	.	ID=gene-C9E96_RS02800;Name=C9E96_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02800;old_locus_tag=C9E96_02845
NZ_PYJX01000039.1	Protein Homology	CDS	57408	58649	.	+	0	ID=cds-WP_063809091.1;Parent=gene-C9E96_RS02800;Dbxref=GenBank:WP_063809091.1;Name=WP_063809091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461131.1;locus_tag=C9E96_RS02800;product=NAD(P)-dependent oxidoreductase;protein_id=WP_063809091.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	58643	59878	.	+	.	ID=gene-C9E96_RS02805;Name=preA;gbkey=Gene;gene=preA;gene_biotype=protein_coding;locus_tag=C9E96_RS02805;old_locus_tag=C9E96_02850
NZ_PYJX01000039.1	Protein Homology	CDS	58643	59878	.	+	0	ID=cds-WP_135493823.1;Parent=gene-C9E96_RS02805;Dbxref=GenBank:WP_135493823.1;Name=WP_135493823.1;Ontology_term=GO:0006210,GO:0006212,GO:0017113;gbkey=CDS;gene=preA;go_function=dihydropyrimidine dehydrogenase (NADP+) activity|0017113||IEA;go_process=thymine catabolic process|0006210||IEA,uracil catabolic process|0006212||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461132.1;locus_tag=C9E96_RS02805;product=NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;protein_id=WP_135493823.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	59953	60963	.	-	.	ID=gene-C9E96_RS02810;Name=mglC;gbkey=Gene;gene=mglC;gene_biotype=protein_coding;locus_tag=C9E96_RS02810;old_locus_tag=C9E96_02855
NZ_PYJX01000039.1	Protein Homology	CDS	59953	60963	.	-	0	ID=cds-WP_001275101.1;Parent=gene-C9E96_RS02810;Dbxref=GenBank:WP_001275101.1;Name=WP_001275101.1;Ontology_term=GO:0008643,GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mglC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129205.1;locus_tag=C9E96_RS02810;product=galactose/methyl galactoside ABC transporter permease MglC;protein_id=WP_001275101.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	60979	62499	.	-	.	ID=gene-C9E96_RS02815;Name=mglA;gbkey=Gene;gene=mglA;gene_biotype=protein_coding;locus_tag=C9E96_RS02815;old_locus_tag=C9E96_02860
NZ_PYJX01000039.1	Protein Homology	CDS	60979	62499	.	-	0	ID=cds-WP_000535913.1;Parent=gene-C9E96_RS02815;Dbxref=GenBank:WP_000535913.1;Name=WP_000535913.1;Ontology_term=GO:0008643,GO:0005524,GO:0043211,GO:0016020;gbkey=CDS;gene=mglA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type carbohydrate transporter activity|0043211||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020883197.1;locus_tag=C9E96_RS02815;product=galactose/methyl galactoside ABC transporter ATP-binding protein MglA;protein_id=WP_000535913.1;transl_table=11
NZ_PYJX01000039.1	RefSeq	gene	62633	63631	.	-	.	ID=gene-C9E96_RS02820;Name=mglB;gbkey=Gene;gene=mglB;gene_biotype=protein_coding;locus_tag=C9E96_RS02820;old_locus_tag=C9E96_02865
NZ_PYJX01000039.1	Protein Homology	CDS	62633	63631	.	-	0	ID=cds-WP_001036942.1;Parent=gene-C9E96_RS02820;Dbxref=GenBank:WP_001036942.1;Name=WP_001036942.1;Ontology_term=GO:0030246;gbkey=CDS;gene=mglB;go_function=carbohydrate binding|0030246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461135.1;locus_tag=C9E96_RS02820;product=galactose/glucose ABC transporter substrate-binding protein MglB;protein_id=WP_001036942.1;transl_table=11
##sequence-region NZ_PYJX01000042.1 1 14041
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000042.1	RefSeq	region	1	14041	.	+	.	ID=NZ_PYJX01000042.1:1..14041;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000042.1	RefSeq	pseudogene	72	1604	.	+	.	ID=gene-C9E96_RS02995;Name=pduC;gbkey=Gene;gene=pduC;gene_biotype=pseudogene;locus_tag=C9E96_RS02995;old_locus_tag=C9E96_03040;partial=true;pseudo=true;start_range=.,72
NZ_PYJX01000042.1	Protein Homology	CDS	72	1604	.	+	0	ID=cds-C9E96_RS02995;Parent=gene-C9E96_RS02995;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;gene=pduC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460985.1;locus_tag=C9E96_RS02995;partial=true;product=propanediol dehydratase large subunit PduC;pseudo=true;start_range=.,72;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	1615	2289	.	+	.	ID=gene-C9E96_RS03000;Name=pduD;gbkey=Gene;gene=pduD;gene_biotype=protein_coding;locus_tag=C9E96_RS03000;old_locus_tag=C9E96_03045
NZ_PYJX01000042.1	Protein Homology	CDS	1615	2289	.	+	0	ID=cds-WP_000405048.1;Parent=gene-C9E96_RS03000;Dbxref=GenBank:WP_000405048.1;Name=WP_000405048.1;gbkey=CDS;gene=pduD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460986.1;locus_tag=C9E96_RS03000;product=propanediol dehydratase medium subunit PduD;protein_id=WP_000405048.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	2304	2825	.	+	.	ID=gene-C9E96_RS03005;Name=pduE;gbkey=Gene;gene=pduE;gene_biotype=protein_coding;locus_tag=C9E96_RS03005;old_locus_tag=C9E96_03050
NZ_PYJX01000042.1	Protein Homology	CDS	2304	2825	.	+	0	ID=cds-WP_001090600.1;Parent=gene-C9E96_RS03005;Dbxref=GenBank:WP_001090600.1;Name=WP_001090600.1;gbkey=CDS;gene=pduE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460987.1;locus_tag=C9E96_RS03005;product=propanediol dehydratase small subunit PduE;protein_id=WP_001090600.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	2841	4673	.	+	.	ID=gene-C9E96_RS03010;Name=pduG;gbkey=Gene;gene=pduG;gene_biotype=protein_coding;locus_tag=C9E96_RS03010;old_locus_tag=C9E96_03055
NZ_PYJX01000042.1	Protein Homology	CDS	2841	4673	.	+	0	ID=cds-WP_135493831.1;Parent=gene-C9E96_RS03010;Dbxref=GenBank:WP_135493831.1;Name=WP_135493831.1;gbkey=CDS;gene=pduG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460988.1;locus_tag=C9E96_RS03010;product=propanediol dehydratase reactivase alpha subunit PduG;protein_id=WP_135493831.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	4663	5013	.	+	.	ID=gene-C9E96_RS03015;Name=pduH;gbkey=Gene;gene=pduH;gene_biotype=protein_coding;locus_tag=C9E96_RS03015;old_locus_tag=C9E96_03060
NZ_PYJX01000042.1	Protein Homology	CDS	4663	5013	.	+	0	ID=cds-WP_000377969.1;Parent=gene-C9E96_RS03015;Dbxref=GenBank:WP_000377969.1;Name=WP_000377969.1;gbkey=CDS;gene=pduH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460989.1;locus_tag=C9E96_RS03015;product=propanediol dehydratase reactivase beta subunit PduH;protein_id=WP_000377969.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	5032	5307	.	+	.	ID=gene-C9E96_RS03020;Name=pduJ;gbkey=Gene;gene=pduJ;gene_biotype=protein_coding;locus_tag=C9E96_RS03020;old_locus_tag=C9E96_03065
NZ_PYJX01000042.1	Protein Homology	CDS	5032	5307	.	+	0	ID=cds-WP_001057755.1;Parent=gene-C9E96_RS03020;Dbxref=GenBank:WP_001057755.1;Name=WP_001057755.1;gbkey=CDS;gene=pduJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460990.1;locus_tag=C9E96_RS03020;product=propanediol utilization microcompartment protein PduJ;protein_id=WP_001057755.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	5311	5793	.	+	.	ID=gene-C9E96_RS03025;Name=pduK;gbkey=Gene;gene=pduK;gene_biotype=protein_coding;locus_tag=C9E96_RS03025;old_locus_tag=C9E96_03070
NZ_PYJX01000042.1	Protein Homology	CDS	5311	5793	.	+	0	ID=cds-WP_080203689.1;Parent=gene-C9E96_RS03025;Dbxref=GenBank:WP_080203689.1;Name=WP_080203689.1;gbkey=CDS;gene=pduK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460991.3;locus_tag=C9E96_RS03025;product=propanediol utilization microcompartment protein PduK;protein_id=WP_080203689.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	5793	6425	.	+	.	ID=gene-C9E96_RS03030;Name=C9E96_RS03030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03030;old_locus_tag=C9E96_03075
NZ_PYJX01000042.1	Protein Homology	CDS	5793	6425	.	+	0	ID=cds-WP_135493833.1;Parent=gene-C9E96_RS03030;Dbxref=GenBank:WP_135493833.1;Name=WP_135493833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460992.1;locus_tag=C9E96_RS03030;product=phosphate propanoyltransferase;protein_id=WP_135493833.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	6422	6913	.	+	.	ID=gene-C9E96_RS03035;Name=pduM;gbkey=Gene;gene=pduM;gene_biotype=protein_coding;locus_tag=C9E96_RS03035;old_locus_tag=C9E96_03080
NZ_PYJX01000042.1	Protein Homology	CDS	6422	6913	.	+	0	ID=cds-WP_135493835.1;Parent=gene-C9E96_RS03035;Dbxref=GenBank:WP_135493835.1;Name=WP_135493835.1;gbkey=CDS;gene=pduM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460993.1;locus_tag=C9E96_RS03035;product=propanediol utilization microcompartment protein PduM;protein_id=WP_135493835.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	6917	7192	.	+	.	ID=gene-C9E96_RS03040;Name=pduN;gbkey=Gene;gene=pduN;gene_biotype=protein_coding;locus_tag=C9E96_RS03040;old_locus_tag=C9E96_03085
NZ_PYJX01000042.1	Protein Homology	CDS	6917	7192	.	+	0	ID=cds-WP_000549825.1;Parent=gene-C9E96_RS03040;Dbxref=GenBank:WP_000549825.1;Name=WP_000549825.1;gbkey=CDS;gene=pduN;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228577.1;locus_tag=C9E96_RS03040;product=propanediol utilization microcompartment protein PduN;protein_id=WP_000549825.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	7202	8212	.	+	.	ID=gene-C9E96_RS03045;Name=pduO;gbkey=Gene;gene=pduO;gene_biotype=protein_coding;locus_tag=C9E96_RS03045;old_locus_tag=C9E96_03090
NZ_PYJX01000042.1	Protein Homology	CDS	7202	8212	.	+	0	ID=cds-WP_001808095.1;Parent=gene-C9E96_RS03045;Dbxref=GenBank:WP_001808095.1;Name=WP_001808095.1;gbkey=CDS;gene=pduO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460995.1;locus_tag=C9E96_RS03045;product=two-domain cob(I)yrinic acid a%2Cc-diamide adenosyltransferase PduO;protein_id=WP_001808095.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	8209	9603	.	+	.	ID=gene-C9E96_RS03050;Name=pduP;gbkey=Gene;gene=pduP;gene_biotype=protein_coding;locus_tag=C9E96_RS03050;old_locus_tag=C9E96_03095
NZ_PYJX01000042.1	Protein Homology	CDS	8209	9603	.	+	0	ID=cds-WP_080203692.1;Parent=gene-C9E96_RS03050;Dbxref=GenBank:WP_080203692.1;Name=WP_080203692.1;gbkey=CDS;gene=pduP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460996.1;locus_tag=C9E96_RS03050;product=CoA-acylating propionaldehyde dehydrogenase PduP;protein_id=WP_080203692.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	9615	10727	.	+	.	ID=gene-C9E96_RS03055;Name=pduQ;gbkey=Gene;gene=pduQ;gene_biotype=protein_coding;locus_tag=C9E96_RS03055;old_locus_tag=C9E96_03100
NZ_PYJX01000042.1	Protein Homology	CDS	9615	10727	.	+	0	ID=cds-WP_023202804.1;Parent=gene-C9E96_RS03055;Dbxref=GenBank:WP_023202804.1;Name=WP_023202804.1;gbkey=CDS;gene=pduQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460997.1;locus_tag=C9E96_RS03055;product=1-propanol dehydrogenase PduQ;protein_id=WP_023202804.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	10724	12079	.	+	.	ID=gene-C9E96_RS03060;Name=pduS;gbkey=Gene;gene=pduS;gene_biotype=protein_coding;locus_tag=C9E96_RS03060;old_locus_tag=C9E96_03105
NZ_PYJX01000042.1	Protein Homology	CDS	10724	12079	.	+	0	ID=cds-WP_080203693.1;Parent=gene-C9E96_RS03060;Dbxref=GenBank:WP_080203693.1;Name=WP_080203693.1;gbkey=CDS;gene=pduS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460998.1;locus_tag=C9E96_RS03060;product=cobalamin reductase PduS;protein_id=WP_080203693.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	12082	12636	.	+	.	ID=gene-C9E96_RS03065;Name=pduT;gbkey=Gene;gene=pduT;gene_biotype=protein_coding;locus_tag=C9E96_RS03065;old_locus_tag=C9E96_03110
NZ_PYJX01000042.1	Protein Homology	CDS	12082	12636	.	+	0	ID=cds-WP_000075772.1;Parent=gene-C9E96_RS03065;Dbxref=GenBank:WP_000075772.1;Name=WP_000075772.1;gbkey=CDS;gene=pduT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460999.1;locus_tag=C9E96_RS03065;product=propanediol utilization microcompartment protein PduT;protein_id=WP_000075772.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	12636	12986	.	+	.	ID=gene-C9E96_RS03070;Name=pduU;gbkey=Gene;gene=pduU;gene_biotype=protein_coding;locus_tag=C9E96_RS03070;old_locus_tag=C9E96_03115
NZ_PYJX01000042.1	Protein Homology	CDS	12636	12986	.	+	0	ID=cds-WP_000441103.1;Parent=gene-C9E96_RS03070;Dbxref=GenBank:WP_000441103.1;Name=WP_000441103.1;gbkey=CDS;gene=pduU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461000.1;locus_tag=C9E96_RS03070;product=propanediol utilization microcompartment protein PduU;protein_id=WP_000441103.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	gene	12991	13443	.	+	.	ID=gene-C9E96_RS03075;Name=pduV;gbkey=Gene;gene=pduV;gene_biotype=protein_coding;locus_tag=C9E96_RS03075;old_locus_tag=C9E96_03120
NZ_PYJX01000042.1	Protein Homology	CDS	12991	13443	.	+	0	ID=cds-WP_000826277.1;Parent=gene-C9E96_RS03075;Dbxref=GenBank:WP_000826277.1;Name=WP_000826277.1;gbkey=CDS;gene=pduV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461001.1;locus_tag=C9E96_RS03075;product=propanediol utilization protein PduV;protein_id=WP_000826277.1;transl_table=11
NZ_PYJX01000042.1	RefSeq	pseudogene	13428	14041	.	+	.	ID=gene-C9E96_RS03080;Name=pduW;end_range=14041,.;gbkey=Gene;gene=pduW;gene_biotype=pseudogene;locus_tag=C9E96_RS03080;old_locus_tag=C9E96_03125;partial=true;pseudo=true
NZ_PYJX01000042.1	Protein Homology	CDS	13428	14041	.	+	0	ID=cds-C9E96_RS03080;Parent=gene-C9E96_RS03080;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=14041,.;gbkey=CDS;gene=pduW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461002.1;locus_tag=C9E96_RS03080;partial=true;product=propanediol utilization propionate kinase PduW;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000086.1 1 13731
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000086.1	RefSeq	region	1	13731	.	+	.	ID=NZ_PYJX01000086.1:1..13731;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000086.1	RefSeq	gene	1	1769	.	-	.	ID=gene-C9E96_RS07810;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=C9E96_RS07810;old_locus_tag=C9E96_08005;partial=true;start_range=.,1
NZ_PYJX01000086.1	Protein Homology	CDS	1	1769	.	-	0	ID=cds-WP_135494058.1;Parent=gene-C9E96_RS07810;Dbxref=GenBank:WP_135494058.1;Name=WP_135494058.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461362.1;locus_tag=C9E96_RS07810;partial=true;product=NAD-dependent DNA ligase LigA;protein_id=WP_135494058.1;start_range=.,1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	1841	2827	.	-	.	ID=gene-C9E96_RS07815;Name=zipA;gbkey=Gene;gene=zipA;gene_biotype=protein_coding;locus_tag=C9E96_RS07815;old_locus_tag=C9E96_08010
NZ_PYJX01000086.1	Protein Homology	CDS	1841	2827	.	-	0	ID=cds-WP_000983131.1;Parent=gene-C9E96_RS07815;Dbxref=GenBank:WP_000983131.1;Name=WP_000983131.1;Ontology_term=GO:0000917,GO:0005515,GO:0016020;gbkey=CDS;gene=zipA;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461363.1;locus_tag=C9E96_RS07815;product=cell division protein ZipA;protein_id=WP_000983131.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	3059	3820	.	+	.	ID=gene-C9E96_RS07820;Name=cysZ;gbkey=Gene;gene=cysZ;gene_biotype=protein_coding;locus_tag=C9E96_RS07820;old_locus_tag=C9E96_08015
NZ_PYJX01000086.1	Protein Homology	CDS	3059	3820	.	+	0	ID=cds-WP_000255006.1;Parent=gene-C9E96_RS07820;Dbxref=GenBank:WP_000255006.1;Name=WP_000255006.1;Ontology_term=GO:0000103,GO:0015116,GO:0005886;gbkey=CDS;gene=cysZ;go_component=plasma membrane|0005886||IEA;go_function=sulfate transmembrane transporter activity|0015116||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461364.1;locus_tag=C9E96_RS07820;product=sulfate transporter CysZ;protein_id=WP_000255006.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	3984	4955	.	+	.	ID=gene-C9E96_RS07825;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=C9E96_RS07825;old_locus_tag=C9E96_08020
NZ_PYJX01000086.1	Protein Homology	CDS	3984	4955	.	+	0	ID=cds-WP_135494060.1;Parent=gene-C9E96_RS07825;Dbxref=GenBank:WP_135494060.1;Name=WP_135494060.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysK;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000034402.1;locus_tag=C9E96_RS07825;product=cysteine synthase A;protein_id=WP_135494060.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	5339	5596	.	+	.	ID=gene-C9E96_RS07830;Name=ptsH;gbkey=Gene;gene=ptsH;gene_biotype=protein_coding;locus_tag=C9E96_RS07830;old_locus_tag=C9E96_08025
NZ_PYJX01000086.1	Protein Homology	CDS	5339	5596	.	+	0	ID=cds-WP_000487600.1;Parent=gene-C9E96_RS07830;Dbxref=GenBank:WP_000487600.1;Name=WP_000487600.1;gbkey=CDS;gene=ptsH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003038086.1;locus_tag=C9E96_RS07830;product=phosphocarrier protein Hpr;protein_id=WP_000487600.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	5645	7372	.	+	.	ID=gene-C9E96_RS07835;Name=ptsI;gbkey=Gene;gene=ptsI;gene_biotype=protein_coding;locus_tag=C9E96_RS07835;old_locus_tag=C9E96_08030
NZ_PYJX01000086.1	Protein Homology	CDS	5645	7372	.	+	0	ID=cds-WP_000623118.1;Parent=gene-C9E96_RS07835;Dbxref=GenBank:WP_000623118.1;Name=WP_000623118.1;gbkey=CDS;gene=ptsI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004870786.1;locus_tag=C9E96_RS07835;product=phosphoenolpyruvate-protein phosphotransferase PtsI;protein_id=WP_000623118.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	7413	7922	.	+	.	ID=gene-C9E96_RS07840;Name=crr;gbkey=Gene;gene=crr;gene_biotype=protein_coding;locus_tag=C9E96_RS07840;old_locus_tag=C9E96_08035
NZ_PYJX01000086.1	Protein Homology	CDS	7413	7922	.	+	0	ID=cds-WP_000522253.1;Parent=gene-C9E96_RS07840;Dbxref=GenBank:WP_000522253.1;Name=WP_000522253.1;Ontology_term=GO:0009401;gbkey=CDS;gene=crr;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015833547.1;locus_tag=C9E96_RS07840;product=PTS glucose transporter subunit IIA;protein_id=WP_000522253.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	8072	8311	.	-	.	ID=gene-C9E96_RS07845;Name=C9E96_RS07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07845;old_locus_tag=C9E96_08040
NZ_PYJX01000086.1	Protein Homology	CDS	8072	8311	.	-	0	ID=cds-WP_000844541.1;Parent=gene-C9E96_RS07845;Dbxref=GenBank:WP_000844541.1;Name=WP_000844541.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461369.1;locus_tag=C9E96_RS07845;product=hypothetical protein;protein_id=WP_000844541.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	8308	9174	.	-	.	ID=gene-C9E96_RS07850;Name=pdxK;gbkey=Gene;gene=pdxK;gene_biotype=protein_coding;gene_synonym=thiJ;locus_tag=C9E96_RS07850;old_locus_tag=C9E96_08045
NZ_PYJX01000086.1	Protein Homology	CDS	8308	9174	.	-	0	ID=cds-WP_000529613.1;Parent=gene-C9E96_RS07850;Dbxref=GenBank:WP_000529613.1;Name=WP_000529613.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxK;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461370.1;locus_tag=C9E96_RS07850;product=pyridoxine/pyridoxal/pyridoxamine kinase;protein_id=WP_000529613.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	9257	10549	.	+	.	ID=gene-C9E96_RS07855;Name=ptsJ;gbkey=Gene;gene=ptsJ;gene_biotype=protein_coding;locus_tag=C9E96_RS07855;old_locus_tag=C9E96_08050
NZ_PYJX01000086.1	Protein Homology	CDS	9257	10549	.	+	0	ID=cds-WP_000565115.1;Parent=gene-C9E96_RS07855;Dbxref=GenBank:WP_000565115.1;Name=WP_000565115.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ptsJ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461371.1;locus_tag=C9E96_RS07855;product=transcriptional regulator PtsJ;protein_id=WP_000565115.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	10564	11283	.	+	.	ID=gene-C9E96_RS07860;Name=C9E96_RS07860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07860;old_locus_tag=C9E96_08055
NZ_PYJX01000086.1	Protein Homology	CDS	10564	11283	.	+	0	ID=cds-WP_001263753.1;Parent=gene-C9E96_RS07860;Dbxref=GenBank:WP_001263753.1;Name=WP_001263753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461372.1;locus_tag=C9E96_RS07860;product=GMP synthase;protein_id=WP_001263753.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	11342	11725	.	+	.	ID=gene-C9E96_RS07865;Name=C9E96_RS07865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07865;old_locus_tag=C9E96_08060
NZ_PYJX01000086.1	Protein Homology	CDS	11342	11725	.	+	0	ID=cds-WP_000710732.1;Parent=gene-C9E96_RS07865;Dbxref=GenBank:WP_000710732.1;Name=WP_000710732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000710732.1;locus_tag=C9E96_RS07865;product=YfeK family protein;protein_id=WP_000710732.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	11825	12433	.	-	.	ID=gene-C9E96_RS07870;Name=C9E96_RS07870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07870;old_locus_tag=C9E96_08065
NZ_PYJX01000086.1	Protein Homology	CDS	11825	12433	.	-	0	ID=cds-WP_135494062.1;Parent=gene-C9E96_RS07870;Dbxref=GenBank:WP_135494062.1;Name=WP_135494062.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000666526.1;locus_tag=C9E96_RS07870;product=tetratricopeptide repeat protein;protein_id=WP_135494062.1;transl_table=11
NZ_PYJX01000086.1	RefSeq	gene	12685	13596	.	-	.	ID=gene-C9E96_RS07875;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=C9E96_RS07875;old_locus_tag=C9E96_08070
NZ_PYJX01000086.1	Protein Homology	CDS	12685	13596	.	-	0	ID=cds-WP_023993744.1;Parent=gene-C9E96_RS07875;Dbxref=GenBank:WP_023993744.1;Name=WP_023993744.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysM;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461375.1;locus_tag=C9E96_RS07875;product=cysteine synthase CysM;protein_id=WP_023993744.1;transl_table=11
##sequence-region NZ_PYJX01000019.1 1 13703
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000019.1	RefSeq	region	1	13703	.	+	.	ID=NZ_PYJX01000019.1:1..13703;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000019.1	RefSeq	gene	138	776	.	-	.	ID=gene-C9E96_RS01195;Name=leuE;gbkey=Gene;gene=leuE;gene_biotype=protein_coding;locus_tag=C9E96_RS01195;old_locus_tag=C9E96_01225
NZ_PYJX01000019.1	Protein Homology	CDS	138	776	.	-	0	ID=cds-WP_000457190.1;Parent=gene-C9E96_RS01195;Dbxref=GenBank:WP_000457190.1;Name=WP_000457190.1;Ontology_term=GO:0006865;gbkey=CDS;gene=leuE;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460236.1;locus_tag=C9E96_RS01195;product=leucine efflux protein LeuE;protein_id=WP_000457190.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	973	1518	.	-	.	ID=gene-C9E96_RS01200;Name=C9E96_RS01200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01200;old_locus_tag=C9E96_01230
NZ_PYJX01000019.1	Protein Homology	CDS	973	1518	.	-	0	ID=cds-WP_080203924.1;Parent=gene-C9E96_RS01200;Dbxref=GenBank:WP_080203924.1;Name=WP_080203924.1;Ontology_term=GO:0046417;gbkey=CDS;go_process=chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460235.1;locus_tag=C9E96_RS01200;product=chorismate mutase;protein_id=WP_080203924.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	pseudogene	1601	1755	.	+	.	ID=gene-C9E96_RS24120;Name=C9E96_RS24120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24120;pseudo=true
NZ_PYJX01000019.1	Protein Homology	CDS	1601	1755	.	+	0	ID=cds-C9E96_RS24120;Parent=gene-C9E96_RS24120;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460234.1;locus_tag=C9E96_RS24120;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	1834	2082	.	+	.	ID=gene-C9E96_RS01205;Name=C9E96_RS01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01205;old_locus_tag=C9E96_01235
NZ_PYJX01000019.1	Protein Homology	CDS	1834	2082	.	+	0	ID=cds-WP_000208086.1;Parent=gene-C9E96_RS01205;Dbxref=GenBank:WP_000208086.1;Name=WP_000208086.1;Ontology_term=GO:0071468,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cellular response to acidic pH|0071468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460233.1;locus_tag=C9E96_RS01205;product=biofilm/acid-resistance regulator YmgB/AriR;protein_id=WP_000208086.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	2337	3185	.	-	.	ID=gene-C9E96_RS01210;Name=C9E96_RS01210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01210;old_locus_tag=C9E96_01240
NZ_PYJX01000019.1	Protein Homology	CDS	2337	3185	.	-	0	ID=cds-WP_000190260.1;Parent=gene-C9E96_RS01210;Dbxref=GenBank:WP_000190260.1;Name=WP_000190260.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460232.1;locus_tag=C9E96_RS01210;product=MerR family transcriptional regulator;protein_id=WP_000190260.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	3254	3847	.	-	.	ID=gene-C9E96_RS01215;Name=C9E96_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01215;old_locus_tag=C9E96_01245
NZ_PYJX01000019.1	Protein Homology	CDS	3254	3847	.	-	0	ID=cds-WP_001562706.1;Parent=gene-C9E96_RS01215;Dbxref=GenBank:WP_001562706.1;Name=WP_001562706.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460231.1;locus_tag=C9E96_RS01215;product=helix-turn-helix domain-containing protein;protein_id=WP_001562706.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	3992	4780	.	-	.	ID=gene-C9E96_RS01220;Name=aadA;gbkey=Gene;gene=aadA;gene_biotype=protein_coding;locus_tag=C9E96_RS01220;old_locus_tag=C9E96_01250
NZ_PYJX01000019.1	Protein Homology	CDS	3992	4780	.	-	0	ID=cds-WP_080203923.1;Parent=gene-C9E96_RS01220;Dbxref=GenBank:WP_080203923.1;Name=WP_080203923.1;gbkey=CDS;gene=aadA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460230.1;locus_tag=C9E96_RS01220;product=cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9);protein_id=WP_080203923.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	4889	5536	.	-	.	ID=gene-C9E96_RS01225;Name=zinT;gbkey=Gene;gene=zinT;gene_biotype=protein_coding;locus_tag=C9E96_RS01225;old_locus_tag=C9E96_01255
NZ_PYJX01000019.1	Protein Homology	CDS	4889	5536	.	-	0	ID=cds-WP_001537483.1;Parent=gene-C9E96_RS01225;Dbxref=GenBank:WP_001537483.1;Name=WP_001537483.1;Ontology_term=GO:0008270;gbkey=CDS;gene=zinT;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460229.3;locus_tag=C9E96_RS01225;product=metal-binding protein ZinT;protein_id=WP_001537483.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	5648	5724	.	-	.	ID=gene-C9E96_RS01230;Name=C9E96_RS01230;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS01230;old_locus_tag=C9E96_01260
NZ_PYJX01000019.1	tRNAscan-SE	tRNA	5648	5724	.	-	.	ID=rna-C9E96_RS01230;Parent=gene-C9E96_RS01230;anticodon=(pos:complement(5688..5690));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS01230;product=tRNA-Arg
NZ_PYJX01000019.1	tRNAscan-SE	exon	5648	5724	.	-	.	ID=exon-C9E96_RS01230-1;Parent=rna-C9E96_RS01230;anticodon=(pos:complement(5688..5690));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS01230;product=tRNA-Arg
NZ_PYJX01000019.1	RefSeq	gene	5733	6059	.	-	.	ID=gene-C9E96_RS01235;Name=C9E96_RS01235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01235;old_locus_tag=C9E96_01265
NZ_PYJX01000019.1	Protein Homology	CDS	5733	6059	.	-	0	ID=cds-WP_001183699.1;Parent=gene-C9E96_RS01235;Dbxref=GenBank:WP_001183699.1;Name=WP_001183699.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460228.1;locus_tag=C9E96_RS01235;product=four-helix bundle copper-binding protein;protein_id=WP_001183699.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	6253	7386	.	+	.	ID=gene-C9E96_RS01240;Name=C9E96_RS01240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01240;old_locus_tag=C9E96_01270
NZ_PYJX01000019.1	Protein Homology	CDS	6253	7386	.	+	0	ID=cds-WP_000456065.1;Parent=gene-C9E96_RS01240;Dbxref=GenBank:WP_000456065.1;Name=WP_000456065.1;Ontology_term=GO:0055085,GO:0008381,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460227.1;locus_tag=C9E96_RS01240;product=mechanosensitive ion channel family protein;protein_id=WP_000456065.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	7468	8058	.	-	.	ID=gene-C9E96_RS01245;Name=C9E96_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01245;old_locus_tag=C9E96_01275
NZ_PYJX01000019.1	Protein Homology	CDS	7468	8058	.	-	0	ID=cds-WP_080203922.1;Parent=gene-C9E96_RS01245;Dbxref=GenBank:WP_080203922.1;Name=WP_080203922.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460226.1;locus_tag=C9E96_RS01245;product=ATP-binding cassette domain-containing protein;protein_id=WP_080203922.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	8052	8849	.	-	.	ID=gene-C9E96_RS01250;Name=C9E96_RS01250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01250;old_locus_tag=C9E96_01280
NZ_PYJX01000019.1	Protein Homology	CDS	8052	8849	.	-	0	ID=cds-WP_080203921.1;Parent=gene-C9E96_RS01250;Dbxref=GenBank:WP_080203921.1;Name=WP_080203921.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460225.1;locus_tag=C9E96_RS01250;product=ATP-binding cassette domain-containing protein;protein_id=WP_080203921.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	8843	9655	.	-	.	ID=gene-C9E96_RS01255;Name=C9E96_RS01255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01255;old_locus_tag=C9E96_01285
NZ_PYJX01000019.1	Protein Homology	CDS	8843	9655	.	-	0	ID=cds-WP_000966637.1;Parent=gene-C9E96_RS01255;Dbxref=GenBank:WP_000966637.1;Name=WP_000966637.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460224.1;locus_tag=C9E96_RS01255;product=ABC transporter permease;protein_id=WP_000966637.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	9645	10619	.	-	.	ID=gene-C9E96_RS01260;Name=C9E96_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01260;old_locus_tag=C9E96_01290
NZ_PYJX01000019.1	Protein Homology	CDS	9645	10619	.	-	0	ID=cds-WP_080203920.1;Parent=gene-C9E96_RS01260;Dbxref=GenBank:WP_080203920.1;Name=WP_080203920.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460223.1;locus_tag=C9E96_RS01260;product=ABC transporter permease;protein_id=WP_080203920.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	10619	12253	.	-	.	ID=gene-C9E96_RS01265;Name=C9E96_RS01265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01265;old_locus_tag=C9E96_01295
NZ_PYJX01000019.1	Protein Homology	CDS	10619	12253	.	-	0	ID=cds-WP_000946092.1;Parent=gene-C9E96_RS01265;Dbxref=GenBank:WP_000946092.1;Name=WP_000946092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460222.1;locus_tag=C9E96_RS01265;product=ABC transporter substrate-binding protein;protein_id=WP_000946092.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	12935	13249	.	+	.	ID=gene-C9E96_RS01270;Name=C9E96_RS01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01270;old_locus_tag=C9E96_01300
NZ_PYJX01000019.1	Protein Homology	CDS	12935	13249	.	+	0	ID=cds-WP_000182478.1;Parent=gene-C9E96_RS01270;Dbxref=GenBank:WP_000182478.1;Name=WP_000182478.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460221.1;locus_tag=C9E96_RS01270;product=TRL-like family protein;protein_id=WP_000182478.1;transl_table=11
NZ_PYJX01000019.1	RefSeq	gene	13398	13703	.	+	.	ID=gene-C9E96_RS01275;Name=C9E96_RS01275;end_range=13703,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01275;old_locus_tag=C9E96_01305;partial=true
NZ_PYJX01000019.1	Protein Homology	CDS	13398	13703	.	+	0	ID=cds-WP_135493747.1;Parent=gene-C9E96_RS01275;Dbxref=GenBank:WP_135493747.1;Name=WP_135493747.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;end_range=13703,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460220.1;locus_tag=C9E96_RS01275;partial=true;product=cytochrome b;protein_id=WP_135493747.1;transl_table=11
##sequence-region NZ_PYJX01000147.1 1 13497
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000147.1	RefSeq	region	1	13497	.	+	.	ID=NZ_PYJX01000147.1:1..13497;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000147.1	RefSeq	gene	1	1490	.	+	.	ID=gene-C9E96_RS13010;Name=proS;gbkey=Gene;gene=proS;gene_biotype=protein_coding;locus_tag=C9E96_RS13010;old_locus_tag=C9E96_13325;partial=true;start_range=.,1
NZ_PYJX01000147.1	Protein Homology	CDS	1	1490	.	+	2	ID=cds-WP_135494282.1;Parent=gene-C9E96_RS13010;Dbxref=GenBank:WP_135494282.1;Name=WP_135494282.1;Ontology_term=GO:0006433,GO:0004827,GO:0005524,GO:0005737;gbkey=CDS;gene=proS;go_component=cytoplasm|0005737||IEA;go_function=proline-tRNA ligase activity|0004827||IEA,ATP binding|0005524||IEA;go_process=prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133963.1;locus_tag=C9E96_RS13010;partial=true;product=proline--tRNA ligase;protein_id=WP_135494282.1;start_range=.,1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	1564	2265	.	-	.	ID=gene-C9E96_RS13015;Name=nlpE;gbkey=Gene;gene=nlpE;gene_biotype=protein_coding;gene_synonym=cutF;locus_tag=C9E96_RS13015;old_locus_tag=C9E96_13330
NZ_PYJX01000147.1	Protein Homology	CDS	1564	2265	.	-	0	ID=cds-WP_000252580.1;Parent=gene-C9E96_RS13015;Dbxref=GenBank:WP_000252580.1;Name=WP_000252580.1;Note=NlpE%2C an outer membrane lipoprotein%2C interacts directly with CpxA%2C the sensor histidine kinase of the Cpx system for response to envelope stress.;gbkey=CDS;gene=nlpE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006899150.1;locus_tag=C9E96_RS13015;product=envelope stress response activation lipoprotein NlpE;protein_id=WP_000252580.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	2297	2719	.	-	.	ID=gene-C9E96_RS13020;Name=arfB;gbkey=Gene;gene=arfB;gene_biotype=protein_coding;locus_tag=C9E96_RS13020;old_locus_tag=C9E96_13335
NZ_PYJX01000147.1	Protein Homology	CDS	2297	2719	.	-	0	ID=cds-WP_000560523.1;Parent=gene-C9E96_RS13020;Dbxref=GenBank:WP_000560523.1;Name=WP_000560523.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=arfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459245.1;locus_tag=C9E96_RS13020;product=alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB;protein_id=WP_000560523.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	2716	3261	.	-	.	ID=gene-C9E96_RS13025;Name=C9E96_RS13025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13025;old_locus_tag=C9E96_13340
NZ_PYJX01000147.1	Protein Homology	CDS	2716	3261	.	-	0	ID=cds-WP_001185319.1;Parent=gene-C9E96_RS13025;Dbxref=GenBank:WP_001185319.1;Name=WP_001185319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459244.1;locus_tag=C9E96_RS13025;product=YaeQ family protein;protein_id=WP_001185319.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	3459	3659	.	+	.	ID=gene-C9E96_RS13030;Name=C9E96_RS13030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13030;old_locus_tag=C9E96_13345
NZ_PYJX01000147.1	Protein Homology	CDS	3459	3659	.	+	0	ID=cds-WP_001518678.1;Parent=gene-C9E96_RS13030;Dbxref=GenBank:WP_001518678.1;Name=WP_001518678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133967.1;locus_tag=C9E96_RS13030;product=YaeP family protein;protein_id=WP_001518678.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	3646	3906	.	+	.	ID=gene-C9E96_RS13035;Name=rof;gbkey=Gene;gene=rof;gene_biotype=protein_coding;locus_tag=C9E96_RS13035;old_locus_tag=C9E96_13350
NZ_PYJX01000147.1	Protein Homology	CDS	3646	3906	.	+	0	ID=cds-WP_000062330.1;Parent=gene-C9E96_RS13035;Dbxref=GenBank:WP_000062330.1;Name=WP_000062330.1;gbkey=CDS;gene=rof;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459242.1;locus_tag=C9E96_RS13035;product=Rho-binding antiterminator;protein_id=WP_000062330.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	3990	5282	.	-	.	ID=gene-C9E96_RS13040;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=C9E96_RS13040;old_locus_tag=C9E96_13355
NZ_PYJX01000147.1	Protein Homology	CDS	3990	5282	.	-	0	ID=cds-WP_080203736.1;Parent=gene-C9E96_RS13040;Dbxref=GenBank:WP_080203736.1;Name=WP_080203736.1;Ontology_term=GO:0008033,GO:0000166,GO:0005524,GO:0016879;gbkey=CDS;gene=tilS;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA,ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459241.1;locus_tag=C9E96_RS13040;product=tRNA lysidine(34) synthetase TilS;protein_id=WP_080203736.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	5345	5734	.	-	.	ID=gene-C9E96_RS13045;Name=C9E96_RS13045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13045;old_locus_tag=C9E96_13360
NZ_PYJX01000147.1	Protein Homology	CDS	5345	5734	.	-	0	ID=cds-WP_000901086.1;Parent=gene-C9E96_RS13045;Dbxref=GenBank:WP_000901086.1;Name=WP_000901086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459240.1;locus_tag=C9E96_RS13045;product=VOC family protein;protein_id=WP_000901086.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	5790	7931	.	-	.	ID=gene-C9E96_RS13050;Name=ldcC;gbkey=Gene;gene=ldcC;gene_biotype=protein_coding;locus_tag=C9E96_RS13050;old_locus_tag=C9E96_13365
NZ_PYJX01000147.1	Protein Homology	CDS	5790	7931	.	-	0	ID=cds-WP_001021055.1;Parent=gene-C9E96_RS13050;Dbxref=GenBank:WP_001021055.1;Name=WP_001021055.1;gbkey=CDS;gene=ldcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459239.1;locus_tag=C9E96_RS13050;product=lysine decarboxylase LdcC;protein_id=WP_001021055.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	8007	9770	.	-	.	ID=gene-C9E96_RS13055;Name=C9E96_RS13055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13055;old_locus_tag=C9E96_13370
NZ_PYJX01000147.1	Protein Homology	CDS	8007	9770	.	-	0	ID=cds-WP_000524169.1;Parent=gene-C9E96_RS13055;Dbxref=GenBank:WP_000524169.1;Name=WP_000524169.1;Ontology_term=GO:0006032,GO:0016998,GO:0004568;gbkey=CDS;go_function=chitinase activity|0004568||IEA;go_process=chitin catabolic process|0006032||IEA,cell wall macromolecule catabolic process|0016998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459238.1;locus_tag=C9E96_RS13055;product=chitinase;protein_id=WP_000524169.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	gene	9950	10909	.	-	.	ID=gene-C9E96_RS13060;Name=accA;gbkey=Gene;gene=accA;gene_biotype=protein_coding;locus_tag=C9E96_RS13060;old_locus_tag=C9E96_13375
NZ_PYJX01000147.1	Protein Homology	CDS	9950	10909	.	-	0	ID=cds-WP_000055753.1;Parent=gene-C9E96_RS13060;Dbxref=GenBank:WP_000055753.1;Name=WP_000055753.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accA;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132091.1;locus_tag=C9E96_RS13060;product=acetyl-CoA carboxylase carboxyl transferase subunit alpha;protein_id=WP_000055753.1;transl_table=11
NZ_PYJX01000147.1	RefSeq	pseudogene	10922	13497	.	-	.	ID=gene-C9E96_RS13065;Name=dnaE;end_range=13497,.;gbkey=Gene;gene=dnaE;gene_biotype=pseudogene;locus_tag=C9E96_RS13065;old_locus_tag=C9E96_13380;partial=true;pseudo=true
NZ_PYJX01000147.1	Protein Homology	CDS	10922	13497	.	-	2	ID=cds-C9E96_RS13065;Parent=gene-C9E96_RS13065;Note=internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0006260,GO:0003676,GO:0008408;end_range=13497,.;gbkey=CDS;gene=dnaE;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459236.1;locus_tag=C9E96_RS13065;partial=true;product=DNA polymerase III subunit alpha;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000231.1 1 13475
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000231.1	RefSeq	region	1	13475	.	+	.	ID=NZ_PYJX01000231.1:1..13475;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000231.1	RefSeq	gene	77	1813	.	-	.	ID=gene-C9E96_RS22210;Name=C9E96_RS22210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22210;old_locus_tag=C9E96_22760
NZ_PYJX01000231.1	Protein Homology	CDS	77	1813	.	-	0	ID=cds-WP_080203657.1;Parent=gene-C9E96_RS22210;Dbxref=GenBank:WP_080203657.1;Name=WP_080203657.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016507453.1;locus_tag=C9E96_RS22210;product=heme lyase CcmF/NrfE family subunit;protein_id=WP_080203657.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	1806	2762	.	-	.	ID=gene-C9E96_RS22215;Name=nrfD;gbkey=Gene;gene=nrfD;gene_biotype=protein_coding;locus_tag=C9E96_RS22215;old_locus_tag=C9E96_22765
NZ_PYJX01000231.1	Protein Homology	CDS	1806	2762	.	-	0	ID=cds-WP_021001034.1;Parent=gene-C9E96_RS22215;Dbxref=GenBank:WP_021001034.1;Name=WP_021001034.1;gbkey=CDS;gene=nrfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463145.1;locus_tag=C9E96_RS22215;product=cytochrome c nitrite reductase subunit NrfD;protein_id=WP_021001034.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	2759	3430	.	-	.	ID=gene-C9E96_RS22220;Name=nrfC;gbkey=Gene;gene=nrfC;gene_biotype=protein_coding;locus_tag=C9E96_RS22220;old_locus_tag=C9E96_22770
NZ_PYJX01000231.1	Protein Homology	CDS	2759	3430	.	-	0	ID=cds-WP_001278025.1;Parent=gene-C9E96_RS22220;Dbxref=GenBank:WP_001278025.1;Name=WP_001278025.1;gbkey=CDS;gene=nrfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463144.1;locus_tag=C9E96_RS22220;product=cytochrome c nitrite reductase Fe-S protein;protein_id=WP_001278025.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	3427	3993	.	-	.	ID=gene-C9E96_RS22225;Name=nrfB;gbkey=Gene;gene=nrfB;gene_biotype=protein_coding;locus_tag=C9E96_RS22225;old_locus_tag=C9E96_22775
NZ_PYJX01000231.1	Protein Homology	CDS	3427	3993	.	-	0	ID=cds-WP_000115065.1;Parent=gene-C9E96_RS22225;Dbxref=GenBank:WP_000115065.1;Name=WP_000115065.1;Ontology_term=GO:0008152,GO:0042597;gbkey=CDS;gene=nrfB;go_component=periplasmic space|0042597||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418495.2;locus_tag=C9E96_RS22225;product=cytochrome c nitrite reductase pentaheme subunit;protein_id=WP_000115065.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	4105	5541	.	-	.	ID=gene-C9E96_RS22230;Name=nrfA;gbkey=Gene;gene=nrfA;gene_biotype=protein_coding;locus_tag=C9E96_RS22230;old_locus_tag=C9E96_22780
NZ_PYJX01000231.1	Protein Homology	CDS	4105	5541	.	-	0	ID=cds-WP_001527354.1;Parent=gene-C9E96_RS22230;Dbxref=GenBank:WP_001527354.1;Name=WP_001527354.1;Ontology_term=GO:0008152,GO:0005509,GO:0020037,GO:0042279,GO:0042597;gbkey=CDS;gene=nrfA;go_component=periplasmic space|0042597||IEA;go_function=calcium ion binding|0005509||IEA,heme binding|0020037||IEA,nitrite reductase (cytochrome%2C ammonia-forming) activity|0042279||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463142.1;locus_tag=C9E96_RS22230;product=ammonia-forming nitrite reductase cytochrome c552 subunit;protein_id=WP_001527354.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	5973	7931	.	+	.	ID=gene-C9E96_RS22235;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=C9E96_RS22235;old_locus_tag=C9E96_22790
NZ_PYJX01000231.1	Protein Homology	CDS	5973	7931	.	+	0	ID=cds-WP_021001033.1;Parent=gene-C9E96_RS22235;Dbxref=GenBank:WP_021001033.1;Name=WP_021001033.1;Ontology_term=GO:0019427,GO:0003987,GO:0016208;gbkey=CDS;gene=acs;go_function=acetate-CoA ligase activity|0003987||IEA,AMP binding|0016208||IEA;go_process=acetyl-CoA biosynthetic process from acetate|0019427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463140.1;locus_tag=C9E96_RS22235;product=acetate--CoA ligase;protein_id=WP_021001033.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	8171	8485	.	+	.	ID=gene-C9E96_RS22240;Name=C9E96_RS22240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22240;old_locus_tag=C9E96_22800
NZ_PYJX01000231.1	Protein Homology	CDS	8171	8485	.	+	0	ID=cds-WP_000999620.1;Parent=gene-C9E96_RS22240;Dbxref=GenBank:WP_000999620.1;Name=WP_000999620.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463139.1;locus_tag=C9E96_RS22240;product=DUF485 domain-containing protein;protein_id=WP_000999620.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	8482	10131	.	+	.	ID=gene-C9E96_RS22245;Name=actP;gbkey=Gene;gene=actP;gene_biotype=protein_coding;locus_tag=C9E96_RS22245;old_locus_tag=C9E96_22805
NZ_PYJX01000231.1	Protein Homology	CDS	8482	10131	.	+	0	ID=cds-WP_135494651.1;Parent=gene-C9E96_RS22245;Dbxref=GenBank:WP_135494651.1;Name=WP_135494651.1;Ontology_term=GO:0006814,GO:0015123,GO:0015370,GO:0031402,GO:0005886;gbkey=CDS;gene=actP;go_component=plasma membrane|0005886||IEA;go_function=acetate transmembrane transporter activity|0015123||IEA,solute:sodium symporter activity|0015370||IEA,sodium ion binding|0031402||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463138.1;locus_tag=C9E96_RS22245;product=cation/acetate symporter ActP;protein_id=WP_135494651.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	10170	10859	.	-	.	ID=gene-C9E96_RS22250;Name=C9E96_RS22250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22250;old_locus_tag=C9E96_22810
NZ_PYJX01000231.1	Protein Homology	CDS	10170	10859	.	-	0	ID=cds-WP_001067096.1;Parent=gene-C9E96_RS22250;Dbxref=GenBank:WP_001067096.1;Name=WP_001067096.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463137.1;locus_tag=C9E96_RS22250;product=LrgB family protein;protein_id=WP_001067096.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	10852	11262	.	-	.	ID=gene-C9E96_RS22255;Name=C9E96_RS22255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22255;old_locus_tag=C9E96_22815
NZ_PYJX01000231.1	Protein Homology	CDS	10852	11262	.	-	0	ID=cds-WP_000257347.1;Parent=gene-C9E96_RS22255;Dbxref=GenBank:WP_000257347.1;Name=WP_000257347.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463136.1;locus_tag=C9E96_RS22255;product=CidA/LrgA family protein;protein_id=WP_000257347.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	11366	12253	.	+	.	ID=gene-C9E96_RS22260;Name=C9E96_RS22260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22260;old_locus_tag=C9E96_22820
NZ_PYJX01000231.1	Protein Homology	CDS	11366	12253	.	+	0	ID=cds-WP_135494654.1;Parent=gene-C9E96_RS22260;Dbxref=GenBank:WP_135494654.1;Name=WP_135494654.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463135.1;locus_tag=C9E96_RS22260;product=LysR family transcriptional regulator;protein_id=WP_135494654.1;transl_table=11
NZ_PYJX01000231.1	RefSeq	gene	12348	13475	.	-	.	ID=gene-C9E96_RS22265;Name=C9E96_RS22265;end_range=13475,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22265;old_locus_tag=C9E96_22825;partial=true
NZ_PYJX01000231.1	Protein Homology	CDS	12348	13475	.	-	0	ID=cds-WP_135494657.1;Parent=gene-C9E96_RS22265;Dbxref=GenBank:WP_135494657.1;Name=WP_135494657.1;Ontology_term=GO:0006814,GO:0006885,GO:1902600,GO:0015385,GO:0016020;end_range=13475,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463134.1;locus_tag=C9E96_RS22265;partial=true;product=Na+/H+ antiporter;protein_id=WP_135494657.1;transl_table=11
##sequence-region NZ_PYJX01000242.1 1 13267
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000242.1	RefSeq	region	1	13267	.	+	.	ID=NZ_PYJX01000242.1:1..13267;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000242.1	RefSeq	pseudogene	96	230	.	-	.	ID=gene-C9E96_RS22865;Name=C9E96_RS22865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS22865;old_locus_tag=C9E96_23445;partial=true;pseudo=true;start_range=.,96
NZ_PYJX01000242.1	Protein Homology	CDS	96	230	.	-	0	ID=cds-C9E96_RS22865;Parent=gene-C9E96_RS22865;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463447.1;locus_tag=C9E96_RS22865;partial=true;product=fimbrial major subunit SthE;pseudo=true;start_range=.,96;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	271	828	.	-	.	ID=gene-C9E96_RS22870;Name=C9E96_RS22870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22870;old_locus_tag=C9E96_23450
NZ_PYJX01000242.1	Protein Homology	CDS	271	828	.	-	0	ID=cds-WP_001056982.1;Parent=gene-C9E96_RS22870;Dbxref=GenBank:WP_001056982.1;Name=WP_001056982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463448.1;locus_tag=C9E96_RS22870;product=fimbrial protein;protein_id=WP_001056982.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	pseudogene	846	3383	.	-	.	ID=gene-C9E96_RS22875;Name=C9E96_RS22875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS22875;old_locus_tag=C9E96_23455;pseudo=true
NZ_PYJX01000242.1	Protein Homology	CDS	846	3383	.	-	0	ID=cds-C9E96_RS22875;Parent=gene-C9E96_RS22875;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463449.1;locus_tag=C9E96_RS22875;product=fimbrial outer membrane usher protein;pseudo=true;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	3429	4112	.	-	.	ID=gene-C9E96_RS22880;Name=sthA;gbkey=Gene;gene=sthA;gene_biotype=protein_coding;locus_tag=C9E96_RS22880;old_locus_tag=C9E96_23460
NZ_PYJX01000242.1	Protein Homology	CDS	3429	4112	.	-	0	ID=cds-WP_000680522.1;Parent=gene-C9E96_RS22880;Dbxref=GenBank:WP_000680522.1;Name=WP_000680522.1;gbkey=CDS;gene=sthA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463450.1;locus_tag=C9E96_RS22880;product=fimbrial biogenesis chaperone SthA;protein_id=WP_000680522.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	4183	4728	.	-	.	ID=gene-C9E96_RS22885;Name=C9E96_RS22885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22885;old_locus_tag=C9E96_23465
NZ_PYJX01000242.1	Protein Homology	CDS	4183	4728	.	-	0	ID=cds-WP_000482235.1;Parent=gene-C9E96_RS22885;Dbxref=GenBank:WP_000482235.1;Name=WP_000482235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463451.1;locus_tag=C9E96_RS22885;product=fimbrial protein;protein_id=WP_000482235.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	5067	5738	.	-	.	ID=gene-C9E96_RS22890;Name=C9E96_RS22890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22890;old_locus_tag=C9E96_23470
NZ_PYJX01000242.1	Protein Homology	CDS	5067	5738	.	-	0	ID=cds-WP_000811635.1;Parent=gene-C9E96_RS22890;Dbxref=GenBank:WP_000811635.1;Name=WP_000811635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463452.1;locus_tag=C9E96_RS22890;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_000811635.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	6123	6437	.	-	.	ID=gene-C9E96_RS22895;Name=C9E96_RS22895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22895;old_locus_tag=C9E96_23475
NZ_PYJX01000242.1	Protein Homology	CDS	6123	6437	.	-	0	ID=cds-WP_000749515.1;Parent=gene-C9E96_RS22895;Dbxref=GenBank:WP_000749515.1;Name=WP_000749515.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463453.1;locus_tag=C9E96_RS22895;product=hypothetical protein;protein_id=WP_000749515.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	6704	7420	.	-	.	ID=gene-C9E96_RS22900;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=protein_coding;locus_tag=C9E96_RS22900;old_locus_tag=C9E96_23480
NZ_PYJX01000242.1	Protein Homology	CDS	6704	7420	.	-	0	ID=cds-WP_001194359.1;Parent=gene-C9E96_RS22900;Dbxref=GenBank:WP_001194359.1;Name=WP_001194359.1;gbkey=CDS;gene=arcA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003621071.1;locus_tag=C9E96_RS22900;product=two-component system response regulator ArcA;protein_id=WP_001194359.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	7516	7656	.	+	.	ID=gene-C9E96_RS22905;Name=yjjY;gbkey=Gene;gene=yjjY;gene_biotype=protein_coding;locus_tag=C9E96_RS22905;old_locus_tag=C9E96_23485
NZ_PYJX01000242.1	Protein Homology	CDS	7516	7656	.	+	0	ID=cds-WP_001541509.1;Parent=gene-C9E96_RS22905;Dbxref=GenBank:WP_001541509.1;Name=WP_001541509.1;gbkey=CDS;gene=yjjY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463455.1;locus_tag=C9E96_RS22905;product=protein YjjY;protein_id=WP_001541509.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	8056	8742	.	+	.	ID=gene-C9E96_RS22910;Name=C9E96_RS22910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22910;old_locus_tag=C9E96_23490
NZ_PYJX01000242.1	Protein Homology	CDS	8056	8742	.	+	0	ID=cds-WP_001266769.1;Parent=gene-C9E96_RS22910;Dbxref=GenBank:WP_001266769.1;Name=WP_001266769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463456.1;locus_tag=C9E96_RS22910;product=tRNA/rRNA methyltransferase;protein_id=WP_001266769.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	8956	9021	.	+	.	ID=gene-C9E96_RS22915;Name=thrL;gbkey=Gene;gene=thrL;gene_biotype=protein_coding;locus_tag=C9E96_RS22915;old_locus_tag=C9E96_23495
NZ_PYJX01000242.1	Protein Homology	CDS	8956	9021	.	+	0	ID=cds-WP_001575544.1;Parent=gene-C9E96_RS22915;Dbxref=GenBank:WP_001575544.1;Name=WP_001575544.1;Ontology_term=GO:0009088,GO:0031554,GO:0031556;gbkey=CDS;gene=thrL;go_process=threonine biosynthetic process|0009088||IEA,regulation of termination of DNA-templated transcription|0031554||IEA,transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459006.1;locus_tag=C9E96_RS22915;product=thr operon leader peptide;protein_id=WP_001575544.1;transl_table=11
NZ_PYJX01000242.1	cmsearch	sequence_feature	8957	9077	.	+	.	ID=id-NZ_PYJX01000242.1:8957..9077;Dbxref=RFAM:RF00506;Note=Thr leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYJX01000242.1	RefSeq	gene	9103	11565	.	+	.	ID=gene-C9E96_RS22920;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=C9E96_RS22920;old_locus_tag=C9E96_23500
NZ_PYJX01000242.1	Protein Homology	CDS	9103	11565	.	+	0	ID=cds-WP_001264681.1;Parent=gene-C9E96_RS22920;Dbxref=GenBank:WP_001264681.1;Name=WP_001264681.1;Ontology_term=GO:0008652,GO:0009067,GO:0004072,GO:0004412,GO:0050661;gbkey=CDS;gene=thrA;go_function=aspartate kinase activity|0004072||IEA,homoserine dehydrogenase activity|0004412||IEA,NADP binding|0050661||IEA;go_process=amino acid biosynthetic process|0008652||IEA,aspartate family amino acid biosynthetic process|0009067||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124053.1;locus_tag=C9E96_RS22920;product=bifunctional aspartate kinase/homoserine dehydrogenase I;protein_id=WP_001264681.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	gene	11567	12496	.	+	.	ID=gene-C9E96_RS22925;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;locus_tag=C9E96_RS22925;old_locus_tag=C9E96_23505
NZ_PYJX01000242.1	Protein Homology	CDS	11567	12496	.	+	0	ID=cds-WP_000241691.1;Parent=gene-C9E96_RS22925;Dbxref=GenBank:WP_000241691.1;Name=WP_000241691.1;Ontology_term=GO:0009088,GO:0004413,GO:0005524;gbkey=CDS;gene=thrB;go_function=homoserine kinase activity|0004413||IEA,ATP binding|0005524||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459008.1;locus_tag=C9E96_RS22925;product=homoserine kinase;protein_id=WP_000241691.1;transl_table=11
NZ_PYJX01000242.1	RefSeq	pseudogene	12500	13267	.	+	.	ID=gene-C9E96_RS22930;Name=thrC;end_range=13267,.;gbkey=Gene;gene=thrC;gene_biotype=pseudogene;locus_tag=C9E96_RS22930;old_locus_tag=C9E96_23510;partial=true;pseudo=true
NZ_PYJX01000242.1	Protein Homology	CDS	12500	13267	.	+	0	ID=cds-C9E96_RS22930;Parent=gene-C9E96_RS22930;Note=internal stop%3B incomplete%3B missing C-terminus;Ontology_term=GO:0009088,GO:0004795;end_range=13267,.;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459009.1;locus_tag=C9E96_RS22930;partial=true;product=threonine synthase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000021.1 1 13247
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000021.1	RefSeq	region	1	13247	.	+	.	ID=NZ_PYJX01000021.1:1..13247;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000021.1	RefSeq	gene	1	346	.	-	.	ID=gene-C9E96_RS01290;Name=C9E96_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01290;old_locus_tag=C9E96_01320;partial=true;start_range=.,1
NZ_PYJX01000021.1	Protein Homology	CDS	1	346	.	-	0	ID=cds-WP_210114515.1;Parent=gene-C9E96_RS01290;Dbxref=GenBank:WP_210114515.1;Name=WP_210114515.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459460.1;locus_tag=C9E96_RS01290;partial=true;product=acyl-CoA thioesterase domain-containing protein;protein_id=WP_210114515.1;start_range=.,1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	561	1130	.	+	.	ID=gene-C9E96_RS01295;Name=C9E96_RS01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01295;old_locus_tag=C9E96_01325
NZ_PYJX01000021.1	Protein Homology	CDS	561	1130	.	+	0	ID=cds-WP_000779803.1;Parent=gene-C9E96_RS01295;Dbxref=GenBank:WP_000779803.1;Name=WP_000779803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459461.1;locus_tag=C9E96_RS01295;product=YbaY family lipoprotein;protein_id=WP_000779803.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	1163	1552	.	-	.	ID=gene-C9E96_RS01300;Name=C9E96_RS01300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01300;old_locus_tag=C9E96_01330
NZ_PYJX01000021.1	Protein Homology	CDS	1163	1552	.	-	0	ID=cds-WP_000961285.1;Parent=gene-C9E96_RS01300;Dbxref=GenBank:WP_000961285.1;Name=WP_000961285.1;Ontology_term=GO:0006281,GO:0003677,GO:0003824,GO:0003908;gbkey=CDS;go_function=DNA binding|0003677||IEA,catalytic activity|0003824||IEA,methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459462.1;locus_tag=C9E96_RS01300;product=MGMT family protein;protein_id=WP_000961285.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	1637	1733	.	+	.	ID=gene-C9E96_RS01305;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=C9E96_RS01305;old_locus_tag=C9E96_01335
NZ_PYJX01000021.1	cmsearch	SRP_RNA	1637	1733	.	+	.	ID=rna-C9E96_RS01305;Parent=gene-C9E96_RS01305;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS01305;product=signal recognition particle sRNA small type
NZ_PYJX01000021.1	cmsearch	exon	1637	1733	.	+	.	ID=exon-C9E96_RS01305-1;Parent=rna-C9E96_RS01305;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS01305;product=signal recognition particle sRNA small type
NZ_PYJX01000021.1	RefSeq	gene	1783	3333	.	-	.	ID=gene-C9E96_RS01310;Name=C9E96_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01310;old_locus_tag=C9E96_01340
NZ_PYJX01000021.1	Protein Homology	CDS	1783	3333	.	-	0	ID=cds-WP_135493749.1;Parent=gene-C9E96_RS01310;Dbxref=GenBank:WP_135493749.1;Name=WP_135493749.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459463.1;locus_tag=C9E96_RS01310;product=EAL domain-containing protein;protein_id=WP_135493749.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	3558	3818	.	+	.	ID=gene-C9E96_RS01315;Name=C9E96_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01315;old_locus_tag=C9E96_01345
NZ_PYJX01000021.1	Protein Homology	CDS	3558	3818	.	+	0	ID=cds-WP_000801415.1;Parent=gene-C9E96_RS01315;Dbxref=GenBank:WP_000801415.1;Name=WP_000801415.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459464.1;locus_tag=C9E96_RS01315;product=type B 50S ribosomal protein L31;protein_id=WP_000801415.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	3824	3964	.	+	.	ID=gene-C9E96_RS01320;Name=ykgO;gbkey=Gene;gene=ykgO;gene_biotype=protein_coding;locus_tag=C9E96_RS01320;old_locus_tag=C9E96_01350
NZ_PYJX01000021.1	Protein Homology	CDS	3824	3964	.	+	0	ID=cds-WP_001197749.1;Parent=gene-C9E96_RS01320;Dbxref=GenBank:WP_001197749.1;Name=WP_001197749.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459465.1;locus_tag=C9E96_RS01320;product=type B 50S ribosomal protein L36;protein_id=WP_001197749.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	4020	4490	.	-	.	ID=gene-C9E96_RS01325;Name=C9E96_RS01325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01325;old_locus_tag=C9E96_01355
NZ_PYJX01000021.1	Protein Homology	CDS	4020	4490	.	-	0	ID=cds-WP_000136181.1;Parent=gene-C9E96_RS01325;Dbxref=GenBank:WP_000136181.1;Name=WP_000136181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459466.1;locus_tag=C9E96_RS01325;product=YlaC family protein;protein_id=WP_000136181.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	4607	5158	.	-	.	ID=gene-C9E96_RS01330;Name=maa;gbkey=Gene;gene=maa;gene_biotype=protein_coding;locus_tag=C9E96_RS01330;old_locus_tag=C9E96_01360
NZ_PYJX01000021.1	Protein Homology	CDS	4607	5158	.	-	0	ID=cds-WP_080204023.1;Parent=gene-C9E96_RS01330;Dbxref=GenBank:WP_080204023.1;Name=WP_080204023.1;Ontology_term=GO:0016407;gbkey=CDS;gene=maa;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459467.1;locus_tag=C9E96_RS01330;product=maltose O-acetyltransferase;protein_id=WP_080204023.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	5337	5555	.	-	.	ID=gene-C9E96_RS01335;Name=C9E96_RS01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01335;old_locus_tag=C9E96_01365
NZ_PYJX01000021.1	Protein Homology	CDS	5337	5555	.	-	0	ID=cds-WP_001280991.1;Parent=gene-C9E96_RS01335;Dbxref=GenBank:WP_001280991.1;Name=WP_001280991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459468.1;locus_tag=C9E96_RS01335;product=HHA domain-containing protein;protein_id=WP_001280991.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	5583	5957	.	-	.	ID=gene-C9E96_RS01340;Name=tomB;gbkey=Gene;gene=tomB;gene_biotype=protein_coding;locus_tag=C9E96_RS01340;old_locus_tag=C9E96_01370
NZ_PYJX01000021.1	Protein Homology	CDS	5583	5957	.	-	0	ID=cds-WP_000344807.1;Parent=gene-C9E96_RS01340;Dbxref=GenBank:WP_000344807.1;Name=WP_000344807.1;gbkey=CDS;gene=tomB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001741190.1;locus_tag=C9E96_RS01340;product=Hha toxicity modulator TomB;protein_id=WP_000344807.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	6453	9602	.	-	.	ID=gene-C9E96_RS01345;Name=acrB;gbkey=Gene;gene=acrB;gene_biotype=protein_coding;locus_tag=C9E96_RS01345;old_locus_tag=C9E96_01375
NZ_PYJX01000021.1	Protein Homology	CDS	6453	9602	.	-	0	ID=cds-WP_135369887.1;Parent=gene-C9E96_RS01345;Dbxref=GenBank:WP_135369887.1;Name=WP_135369887.1;gbkey=CDS;gene=acrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459470.1;locus_tag=C9E96_RS01345;product=efflux RND transporter permease AcrB;protein_id=WP_135369887.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	9625	10818	.	-	.	ID=gene-C9E96_RS01350;Name=acrA;gbkey=Gene;gene=acrA;gene_biotype=protein_coding;locus_tag=C9E96_RS01350;old_locus_tag=C9E96_01380
NZ_PYJX01000021.1	Protein Homology	CDS	9625	10818	.	-	0	ID=cds-WP_135493751.1;Parent=gene-C9E96_RS01350;Dbxref=GenBank:WP_135493751.1;Name=WP_135493751.1;gbkey=CDS;gene=acrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459471.1;locus_tag=C9E96_RS01350;product=multidrug efflux RND transporter periplasmic adaptor subunit AcrA;protein_id=WP_135493751.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	gene	10960	11613	.	+	.	ID=gene-C9E96_RS01355;Name=acrR;gbkey=Gene;gene=acrR;gene_biotype=protein_coding;locus_tag=C9E96_RS01355;old_locus_tag=C9E96_01385
NZ_PYJX01000021.1	Protein Homology	CDS	10960	11613	.	+	0	ID=cds-WP_000101753.1;Parent=gene-C9E96_RS01355;Dbxref=GenBank:WP_000101753.1;Name=WP_000101753.1;gbkey=CDS;gene=acrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459472.1;locus_tag=C9E96_RS01355;product=multidrug efflux transporter transcriptional repressor AcrR;protein_id=WP_000101753.1;transl_table=11
NZ_PYJX01000021.1	RefSeq	pseudogene	11732	13247	.	+	.	ID=gene-C9E96_RS01360;Name=C9E96_RS01360;end_range=13247,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01360;old_locus_tag=C9E96_01390;partial=true;pseudo=true
NZ_PYJX01000021.1	Protein Homology	CDS	11732	13247	.	+	0	ID=cds-C9E96_RS01360;Parent=gene-C9E96_RS01360;Note=internal stop%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=13247,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459473.1;locus_tag=C9E96_RS01360;partial=true;product=mechanosensitive channel MscK;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000156.1 1 13214
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000156.1	RefSeq	region	1	13214	.	+	.	ID=NZ_PYJX01000156.1:1..13214;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000156.1	RefSeq	pseudogene	33	1031	.	+	.	ID=gene-C9E96_RS13870;Name=C9E96_RS13870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13870;old_locus_tag=C9E96_14205;partial=true;pseudo=true;start_range=.,33
NZ_PYJX01000156.1	Protein Homology	CDS	33	1031	.	+	0	ID=cds-C9E96_RS13870;Parent=gene-C9E96_RS13870;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006265,GO:0003677,GO:0003916;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460264.1;locus_tag=C9E96_RS13870;partial=true;product=DNA topoisomerase;pseudo=true;start_range=.,33;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	1061	2404	.	-	.	ID=gene-C9E96_RS13875;Name=gdhA;gbkey=Gene;gene=gdhA;gene_biotype=protein_coding;locus_tag=C9E96_RS13875;old_locus_tag=C9E96_14210
NZ_PYJX01000156.1	Protein Homology	CDS	1061	2404	.	-	0	ID=cds-WP_000372865.1;Parent=gene-C9E96_RS13875;Dbxref=GenBank:WP_000372865.1;Name=WP_000372865.1;Ontology_term=GO:0006520,GO:0016639;gbkey=CDS;gene=gdhA;go_function=oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor|0016639||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460265.1;locus_tag=C9E96_RS13875;product=NADP-specific glutamate dehydrogenase;protein_id=WP_000372865.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	2643	2918	.	+	.	ID=gene-C9E96_RS13880;Name=C9E96_RS13880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13880;old_locus_tag=C9E96_14215
NZ_PYJX01000156.1	Protein Homology	CDS	2643	2918	.	+	0	ID=cds-WP_000336847.1;Parent=gene-C9E96_RS13880;Dbxref=GenBank:WP_000336847.1;Name=WP_000336847.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465441.1;locus_tag=C9E96_RS13880;product=YnjH family protein;protein_id=WP_000336847.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	2878	3294	.	-	.	ID=gene-C9E96_RS13885;Name=C9E96_RS13885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13885;old_locus_tag=C9E96_14220
NZ_PYJX01000156.1	Protein Homology	CDS	2878	3294	.	-	0	ID=cds-WP_000592136.1;Parent=gene-C9E96_RS13885;Dbxref=GenBank:WP_000592136.1;Name=WP_000592136.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460267.1;locus_tag=C9E96_RS13885;product=pyrimidine (deoxy)nucleoside triphosphate diphosphatase;protein_id=WP_000592136.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	3367	4173	.	-	.	ID=gene-C9E96_RS13890;Name=xthA;gbkey=Gene;gene=xthA;gene_biotype=protein_coding;locus_tag=C9E96_RS13890;old_locus_tag=C9E96_14225
NZ_PYJX01000156.1	Protein Homology	CDS	3367	4173	.	-	0	ID=cds-WP_080219638.1;Parent=gene-C9E96_RS13890;Dbxref=GenBank:WP_080219638.1;Name=WP_080219638.1;Ontology_term=GO:0006281,GO:0003677,GO:0004519,GO:0008311;gbkey=CDS;gene=xthA;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA,double-stranded DNA 3'-5' DNA exonuclease activity|0008311||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460268.1;locus_tag=C9E96_RS13890;product=exodeoxyribonuclease III;protein_id=WP_080219638.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	4619	5845	.	+	.	ID=gene-C9E96_RS13895;Name=astC;gbkey=Gene;gene=astC;gene_biotype=protein_coding;locus_tag=C9E96_RS13895;old_locus_tag=C9E96_14235
NZ_PYJX01000156.1	Protein Homology	CDS	4619	5845	.	+	0	ID=cds-WP_001534648.1;Parent=gene-C9E96_RS13895;Dbxref=GenBank:WP_001534648.1;Name=WP_001534648.1;gbkey=CDS;gene=astC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460269.1;locus_tag=C9E96_RS13895;product=succinylornithine/acetylornithine transaminase;protein_id=WP_001534648.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	5836	6870	.	+	.	ID=gene-C9E96_RS13900;Name=astA;gbkey=Gene;gene=astA;gene_biotype=protein_coding;locus_tag=C9E96_RS13900;old_locus_tag=C9E96_14240
NZ_PYJX01000156.1	Protein Homology	CDS	5836	6870	.	+	0	ID=cds-WP_001263889.1;Parent=gene-C9E96_RS13900;Dbxref=GenBank:WP_001263889.1;Name=WP_001263889.1;Ontology_term=GO:0006527,GO:0008791;gbkey=CDS;gene=astA;go_function=arginine N-succinyltransferase activity|0008791||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460270.1;locus_tag=C9E96_RS13900;product=arginine N-succinyltransferase;protein_id=WP_001263889.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	6867	8345	.	+	.	ID=gene-C9E96_RS13905;Name=astD;gbkey=Gene;gene=astD;gene_biotype=protein_coding;locus_tag=C9E96_RS13905;old_locus_tag=C9E96_14245
NZ_PYJX01000156.1	Protein Homology	CDS	6867	8345	.	+	0	ID=cds-WP_039590667.1;Parent=gene-C9E96_RS13905;Dbxref=GenBank:WP_039590667.1;Name=WP_039590667.1;Ontology_term=GO:0006527,GO:0043824;gbkey=CDS;gene=astD;go_function=succinylglutamate-semialdehyde dehydrogenase activity|0043824||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460271.1;locus_tag=C9E96_RS13905;product=succinylglutamate-semialdehyde dehydrogenase;protein_id=WP_039590667.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	8342	9685	.	+	.	ID=gene-C9E96_RS13910;Name=astB;gbkey=Gene;gene=astB;gene_biotype=protein_coding;locus_tag=C9E96_RS13910;old_locus_tag=C9E96_14250
NZ_PYJX01000156.1	Protein Homology	CDS	8342	9685	.	+	0	ID=cds-WP_000123947.1;Parent=gene-C9E96_RS13910;Dbxref=GenBank:WP_000123947.1;Name=WP_000123947.1;Ontology_term=GO:0006527,GO:0009015;gbkey=CDS;gene=astB;go_function=N-succinylarginine dihydrolase activity|0009015||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460272.1;locus_tag=C9E96_RS13910;product=N-succinylarginine dihydrolase;protein_id=WP_000123947.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	9678	10646	.	+	.	ID=gene-C9E96_RS13915;Name=astE;gbkey=Gene;gene=astE;gene_biotype=protein_coding;locus_tag=C9E96_RS13915;old_locus_tag=C9E96_14255
NZ_PYJX01000156.1	Protein Homology	CDS	9678	10646	.	+	0	ID=cds-WP_135494310.1;Parent=gene-C9E96_RS13915;Dbxref=GenBank:WP_135494310.1;Name=WP_135494310.1;Ontology_term=GO:0006527,GO:0008270,GO:0009017;gbkey=CDS;gene=astE;go_function=zinc ion binding|0008270||IEA,succinylglutamate desuccinylase activity|0009017||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460273.1;locus_tag=C9E96_RS13915;product=succinylglutamate desuccinylase;protein_id=WP_135494310.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	10982	11467	.	+	.	ID=gene-C9E96_RS13920;Name=spy;gbkey=Gene;gene=spy;gene_biotype=protein_coding;locus_tag=C9E96_RS13920;old_locus_tag=C9E96_14265
NZ_PYJX01000156.1	Protein Homology	CDS	10982	11467	.	+	0	ID=cds-WP_001229001.1;Parent=gene-C9E96_RS13920;Dbxref=GenBank:WP_001229001.1;Name=WP_001229001.1;Ontology_term=GO:0042597;gbkey=CDS;gene=spy;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460274.1;locus_tag=C9E96_RS13920;product=ATP-independent periplasmic protein-refolding chaperone Spy;protein_id=WP_001229001.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	gene	11542	12423	.	-	.	ID=gene-C9E96_RS13925;Name=cho;gbkey=Gene;gene=cho;gene_biotype=protein_coding;locus_tag=C9E96_RS13925;old_locus_tag=C9E96_14270
NZ_PYJX01000156.1	Protein Homology	CDS	11542	12423	.	-	0	ID=cds-WP_001526281.1;Parent=gene-C9E96_RS13925;Dbxref=GenBank:WP_001526281.1;Name=WP_001526281.1;gbkey=CDS;gene=cho;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011233065.1;locus_tag=C9E96_RS13925;product=excinuclease Cho;protein_id=WP_001526281.1;transl_table=11
NZ_PYJX01000156.1	RefSeq	pseudogene	12544	13158	.	-	.	ID=gene-C9E96_RS13930;Name=nadE;end_range=13158,.;gbkey=Gene;gene=nadE;gene_biotype=pseudogene;locus_tag=C9E96_RS13930;old_locus_tag=C9E96_14275;partial=true;pseudo=true
NZ_PYJX01000156.1	Protein Homology	CDS	12544	13158	.	-	0	ID=cds-C9E96_RS13930;Parent=gene-C9E96_RS13930;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009435,GO:0003952,GO:0004359,GO:0008795;end_range=13158,.;gbkey=CDS;gene=nadE;go_function=NAD+ synthase (glutamine-hydrolyzing) activity|0003952||IEA,glutaminase activity|0004359||IEA,NAD+ synthase activity|0008795||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460276.1;locus_tag=C9E96_RS13930;partial=true;product=ammonia-dependent NAD(+) synthetase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000212.1 1 13062
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000212.1	RefSeq	region	1	13062	.	+	.	ID=NZ_PYJX01000212.1:1..13062;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000212.1	RefSeq	pseudogene	1	173	.	-	.	ID=gene-C9E96_RS21070;Name=C9E96_RS21070;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS21070;old_locus_tag=C9E96_21600;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000212.1	Protein Homology	CDS	1	173	.	-	0	ID=cds-C9E96_RS21070;Parent=gene-C9E96_RS21070;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463256.1;locus_tag=C9E96_RS21070;partial=true;product=EamA/RhaT family transporter;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	321	770	.	-	.	ID=gene-C9E96_RS21075;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=C9E96_RS21075;old_locus_tag=C9E96_21605
NZ_PYJX01000212.1	Protein Homology	CDS	321	770	.	-	0	ID=cds-WP_135494577.1;Parent=gene-C9E96_RS21075;Dbxref=GenBank:WP_135494577.1;Name=WP_135494577.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134442.1;locus_tag=C9E96_RS21075;product=50S ribosomal protein L9;protein_id=WP_135494577.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	812	1039	.	-	.	ID=gene-C9E96_RS21080;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=C9E96_RS21080;old_locus_tag=C9E96_21610
NZ_PYJX01000212.1	Protein Homology	CDS	812	1039	.	-	0	ID=cds-WP_000135199.1;Parent=gene-C9E96_RS21080;Dbxref=GenBank:WP_000135199.1;Name=WP_000135199.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012986941.1;locus_tag=C9E96_RS21080;product=30S ribosomal protein S18;protein_id=WP_000135199.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	1044	1358	.	-	.	ID=gene-C9E96_RS21085;Name=priB;gbkey=Gene;gene=priB;gene_biotype=protein_coding;locus_tag=C9E96_RS21085;old_locus_tag=C9E96_21615
NZ_PYJX01000212.1	Protein Homology	CDS	1044	1358	.	-	0	ID=cds-WP_001519453.1;Parent=gene-C9E96_RS21085;Dbxref=GenBank:WP_001519453.1;Name=WP_001519453.1;Ontology_term=GO:0006260,GO:0003697,GO:0030894;gbkey=CDS;gene=priB;go_component=replisome|0030894||IEA;go_function=single-stranded DNA binding|0003697||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463253.1;locus_tag=C9E96_RS21085;product=primosomal replication protein N;protein_id=WP_001519453.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	1365	1760	.	-	.	ID=gene-C9E96_RS21090;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=C9E96_RS21090;old_locus_tag=C9E96_21620
NZ_PYJX01000212.1	Protein Homology	CDS	1365	1760	.	-	0	ID=cds-WP_001216673.1;Parent=gene-C9E96_RS21090;Dbxref=GenBank:WP_001216673.1;Name=WP_001216673.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456251.1;locus_tag=C9E96_RS21090;product=30S ribosomal protein S6;protein_id=WP_001216673.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	1831	2037	.	-	.	ID=gene-C9E96_RS21095;Name=C9E96_RS21095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21095;old_locus_tag=C9E96_21625
NZ_PYJX01000212.1	Protein Homology	CDS	1831	2037	.	-	0	ID=cds-WP_001541376.1;Parent=gene-C9E96_RS21095;Dbxref=GenBank:WP_001541376.1;Name=WP_001541376.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463251.1;locus_tag=C9E96_RS21095;product=hypothetical protein;protein_id=WP_001541376.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	2231	2506	.	+	.	ID=gene-C9E96_RS21105;Name=yjfY;gbkey=Gene;gene=yjfY;gene_biotype=protein_coding;locus_tag=C9E96_RS21105;old_locus_tag=C9E96_21635
NZ_PYJX01000212.1	Protein Homology	CDS	2231	2506	.	+	0	ID=cds-WP_001529484.1;Parent=gene-C9E96_RS21105;Dbxref=GenBank:WP_001529484.1;Name=WP_001529484.1;gbkey=CDS;gene=yjfY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463250.1;locus_tag=C9E96_RS21105;product=DUF1471 family protein YjfY;protein_id=WP_001529484.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	2635	3321	.	-	.	ID=gene-C9E96_RS21110;Name=C9E96_RS21110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21110;old_locus_tag=C9E96_21640
NZ_PYJX01000212.1	Protein Homology	CDS	2635	3321	.	-	0	ID=cds-WP_001170771.1;Parent=gene-C9E96_RS21110;Dbxref=GenBank:WP_001170771.1;Name=WP_001170771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463249.1;locus_tag=C9E96_RS21110;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_001170771.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	3321	4175	.	-	.	ID=gene-C9E96_RS21115;Name=C9E96_RS21115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21115;old_locus_tag=C9E96_21645
NZ_PYJX01000212.1	Protein Homology	CDS	3321	4175	.	-	0	ID=cds-WP_135494579.1;Parent=gene-C9E96_RS21115;Dbxref=GenBank:WP_135494579.1;Name=WP_135494579.1;Ontology_term=GO:0005975,GO:0016861;gbkey=CDS;go_function=intramolecular oxidoreductase activity%2C interconverting aldoses and ketoses|0016861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463248.1;locus_tag=C9E96_RS21115;product=L-ribulose-5-phosphate 3-epimerase;protein_id=WP_135494579.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	4185	4835	.	-	.	ID=gene-C9E96_RS21120;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=C9E96_RS21120;old_locus_tag=C9E96_21650
NZ_PYJX01000212.1	Protein Homology	CDS	4185	4835	.	-	0	ID=cds-WP_000056761.1;Parent=gene-C9E96_RS21120;Dbxref=GenBank:WP_000056761.1;Name=WP_000056761.1;gbkey=CDS;gene=ulaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463247.1;locus_tag=C9E96_RS21120;product=3-keto-L-gulonate-6-phosphate decarboxylase UlaD;protein_id=WP_000056761.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	4849	5313	.	-	.	ID=gene-C9E96_RS21125;Name=ulaC;gbkey=Gene;gene=ulaC;gene_biotype=protein_coding;locus_tag=C9E96_RS21125;old_locus_tag=C9E96_21655
NZ_PYJX01000212.1	Protein Homology	CDS	4849	5313	.	-	0	ID=cds-WP_135494581.1;Parent=gene-C9E96_RS21125;Dbxref=GenBank:WP_135494581.1;Name=WP_135494581.1;gbkey=CDS;gene=ulaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463246.1;locus_tag=C9E96_RS21125;product=PTS ascorbate transporter subunit IIA;protein_id=WP_135494581.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	5323	5628	.	-	.	ID=gene-C9E96_RS21130;Name=ulaB;gbkey=Gene;gene=ulaB;gene_biotype=protein_coding;locus_tag=C9E96_RS21130;old_locus_tag=C9E96_21660
NZ_PYJX01000212.1	Protein Homology	CDS	5323	5628	.	-	0	ID=cds-WP_000218362.1;Parent=gene-C9E96_RS21130;Dbxref=GenBank:WP_000218362.1;Name=WP_000218362.1;gbkey=CDS;gene=ulaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313197.1;locus_tag=C9E96_RS21130;product=PTS ascorbate transporter subunit IIB;protein_id=WP_000218362.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	5644	7041	.	-	.	ID=gene-C9E96_RS21135;Name=ulaA;gbkey=Gene;gene=ulaA;gene_biotype=protein_coding;locus_tag=C9E96_RS21135;old_locus_tag=C9E96_21665
NZ_PYJX01000212.1	Protein Homology	CDS	5644	7041	.	-	0	ID=cds-WP_000404876.1;Parent=gene-C9E96_RS21135;Dbxref=GenBank:WP_000404876.1;Name=WP_000404876.1;gbkey=CDS;gene=ulaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418614.4;locus_tag=C9E96_RS21135;product=PTS ascorbate transporter subunit IIC;protein_id=WP_000404876.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	7404	8468	.	+	.	ID=gene-C9E96_RS21140;Name=ulaG;gbkey=Gene;gene=ulaG;gene_biotype=protein_coding;locus_tag=C9E96_RS21140;old_locus_tag=C9E96_21670
NZ_PYJX01000212.1	Protein Homology	CDS	7404	8468	.	+	0	ID=cds-WP_000049161.1;Parent=gene-C9E96_RS21140;Dbxref=GenBank:WP_000049161.1;Name=WP_000049161.1;Ontology_term=GO:0019854,GO:0030145,GO:0035460;gbkey=CDS;gene=ulaG;go_function=manganese ion binding|0030145||IEA,L-ascorbate 6-phosphate lactonase activity|0035460||IEA;go_process=L-ascorbic acid catabolic process|0019854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003856017.1;locus_tag=C9E96_RS21140;product=L-ascorbate 6-phosphate lactonase;protein_id=WP_000049161.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	8573	9328	.	+	.	ID=gene-C9E96_RS21145;Name=ulaR;gbkey=Gene;gene=ulaR;gene_biotype=protein_coding;locus_tag=C9E96_RS21145;old_locus_tag=C9E96_21675
NZ_PYJX01000212.1	Protein Homology	CDS	8573	9328	.	+	0	ID=cds-WP_000133618.1;Parent=gene-C9E96_RS21145;Dbxref=GenBank:WP_000133618.1;Name=WP_000133618.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ulaR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463242.1;locus_tag=C9E96_RS21145;product=HTH-type transcriptional regulator UlaR;protein_id=WP_000133618.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	9325	10074	.	-	.	ID=gene-C9E96_RS21150;Name=yjfP;gbkey=Gene;gene=yjfP;gene_biotype=protein_coding;locus_tag=C9E96_RS21150;old_locus_tag=C9E96_21680
NZ_PYJX01000212.1	Protein Homology	CDS	9325	10074	.	-	0	ID=cds-WP_135494585.1;Parent=gene-C9E96_RS21150;Dbxref=GenBank:WP_135494585.1;Name=WP_135494585.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;gene=yjfP;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463241.1;locus_tag=C9E96_RS21150;product=esterase;protein_id=WP_135494585.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	10258	10587	.	+	.	ID=gene-C9E96_RS21155;Name=bsmA;gbkey=Gene;gene=bsmA;gene_biotype=protein_coding;locus_tag=C9E96_RS21155;old_locus_tag=C9E96_21685
NZ_PYJX01000212.1	Protein Homology	CDS	10258	10587	.	+	0	ID=cds-WP_023993521.1;Parent=gene-C9E96_RS21155;Dbxref=GenBank:WP_023993521.1;Name=WP_023993521.1;gbkey=CDS;gene=bsmA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463240.1;locus_tag=C9E96_RS21155;product=biofilm peroxide resistance protein BsmA;protein_id=WP_023993521.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	10718	10993	.	+	.	ID=gene-C9E96_RS21160;Name=yjfN;gbkey=Gene;gene=yjfN;gene_biotype=protein_coding;locus_tag=C9E96_RS21160;old_locus_tag=C9E96_21690
NZ_PYJX01000212.1	Protein Homology	CDS	10718	10993	.	+	0	ID=cds-WP_001518964.1;Parent=gene-C9E96_RS21160;Dbxref=GenBank:WP_001518964.1;Name=WP_001518964.1;gbkey=CDS;gene=yjfN;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134428.1;locus_tag=C9E96_RS21160;product=DUF1471 family protease activator YjfN;protein_id=WP_001518964.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	11038	12660	.	-	.	ID=gene-C9E96_RS21165;Name=C9E96_RS21165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21165;old_locus_tag=C9E96_21695
NZ_PYJX01000212.1	Protein Homology	CDS	11038	12660	.	-	0	ID=cds-WP_000118964.1;Parent=gene-C9E96_RS21165;Dbxref=GenBank:WP_000118964.1;Name=WP_000118964.1;Ontology_term=GO:0003995;gbkey=CDS;go_function=acyl-CoA dehydrogenase activity|0003995||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463238.3;locus_tag=C9E96_RS21165;product=isovaleryl-CoA dehydrogenase;protein_id=WP_000118964.1;transl_table=11
NZ_PYJX01000212.1	RefSeq	gene	12745	13062	.	-	.	ID=gene-C9E96_RS21170;Name=C9E96_RS21170;end_range=13062,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21170;old_locus_tag=C9E96_21700;partial=true
NZ_PYJX01000212.1	Protein Homology	CDS	12745	13062	.	-	0	ID=cds-WP_167852901.1;Parent=gene-C9E96_RS21170;Dbxref=GenBank:WP_167852901.1;Name=WP_167852901.1;end_range=13062,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017459157.1;locus_tag=C9E96_RS21170;partial=true;product=glutathionylspermidine synthase family protein;protein_id=WP_167852901.1;transl_table=11
##sequence-region NZ_PYJX01000128.1 1 12637
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000128.1	RefSeq	region	1	12637	.	+	.	ID=NZ_PYJX01000128.1:1..12637;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000128.1	RefSeq	gene	1	1079	.	-	.	ID=gene-C9E96_RS10825;Name=C9E96_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10825;old_locus_tag=C9E96_11070;partial=true;start_range=.,1
NZ_PYJX01000128.1	Protein Homology	CDS	1	1079	.	-	0	ID=cds-WP_245306429.1;Parent=gene-C9E96_RS10825;Dbxref=GenBank:WP_245306429.1;Name=WP_245306429.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121480.1;locus_tag=C9E96_RS10825;partial=true;product=ATP-binding protein;protein_id=WP_245306429.1;start_range=.,1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	1108	2181	.	-	.	ID=gene-C9E96_RS10830;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=C9E96_RS10830;old_locus_tag=C9E96_11075
NZ_PYJX01000128.1	Protein Homology	CDS	1108	2181	.	-	0	ID=cds-WP_000060081.1;Parent=gene-C9E96_RS10830;Dbxref=GenBank:WP_000060081.1;Name=WP_000060081.1;Note=All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair.;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0009432,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121479.1;locus_tag=C9E96_RS10830;product=DNA replication/repair protein RecF;protein_id=WP_000060081.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	2329	3429	.	-	.	ID=gene-C9E96_RS10835;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=C9E96_RS10835;old_locus_tag=C9E96_11080
NZ_PYJX01000128.1	Protein Homology	CDS	2329	3429	.	-	0	ID=cds-WP_000673474.1;Parent=gene-C9E96_RS10835;Dbxref=GenBank:WP_000673474.1;Name=WP_000673474.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006177590.1;locus_tag=C9E96_RS10835;product=DNA polymerase III subunit beta;protein_id=WP_000673474.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	3434	4834	.	-	.	ID=gene-C9E96_RS10840;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=C9E96_RS10840;old_locus_tag=C9E96_11085
NZ_PYJX01000128.1	Protein Homology	CDS	3434	4834	.	-	0	ID=cds-WP_000059093.1;Parent=gene-C9E96_RS10840;Dbxref=GenBank:WP_000059093.1;Name=WP_000059093.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462738.1;locus_tag=C9E96_RS10840;product=chromosomal replication initiator protein DnaA;protein_id=WP_000059093.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	5174	5266	.	+	.	ID=gene-C9E96_RS24520;Name=C9E96_RS24520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24520
NZ_PYJX01000128.1	Protein Homology	CDS	5174	5266	.	+	0	ID=cds-WP_418142141.1;Parent=gene-C9E96_RS24520;Dbxref=GenBank:WP_418142141.1;Name=WP_418142141.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF048187.1;locus_tag=C9E96_RS24520;product=hypothetical protein;protein_id=WP_418142141.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	5495	5635	.	+	.	ID=gene-C9E96_RS10845;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=C9E96_RS10845;old_locus_tag=C9E96_11090
NZ_PYJX01000128.1	Protein Homology	CDS	5495	5635	.	+	0	ID=cds-WP_000831330.1;Parent=gene-C9E96_RS10845;Dbxref=GenBank:WP_000831330.1;Name=WP_000831330.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001686914.1;locus_tag=C9E96_RS10845;product=50S ribosomal protein L34;protein_id=WP_000831330.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	5652	6011	.	+	.	ID=gene-C9E96_RS10850;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=C9E96_RS10850;old_locus_tag=C9E96_11095
NZ_PYJX01000128.1	Protein Homology	CDS	5652	6011	.	+	0	ID=cds-WP_000239725.1;Parent=gene-C9E96_RS10850;Dbxref=GenBank:WP_000239725.1;Name=WP_000239725.1;Ontology_term=GO:0008033,GO:0000049,GO:0004526;gbkey=CDS;gene=rnpA;go_function=tRNA binding|0000049||IEA,ribonuclease P activity|0004526||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014172301.1;locus_tag=C9E96_RS10850;product=ribonuclease P protein component;protein_id=WP_000239725.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	5975	6232	.	+	.	ID=gene-C9E96_RS10855;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=C9E96_RS10855;old_locus_tag=C9E96_11100
NZ_PYJX01000128.1	Protein Homology	CDS	5975	6232	.	+	0	ID=cds-WP_001307474.1;Parent=gene-C9E96_RS10855;Dbxref=GenBank:WP_001307474.1;Name=WP_001307474.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462741.1;locus_tag=C9E96_RS10855;product=membrane protein insertion efficiency factor YidD;protein_id=WP_001307474.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	6235	7881	.	+	.	ID=gene-C9E96_RS10860;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=C9E96_RS10860;old_locus_tag=C9E96_11105
NZ_PYJX01000128.1	Protein Homology	CDS	6235	7881	.	+	0	ID=cds-WP_000378283.1;Parent=gene-C9E96_RS10860;Dbxref=GenBank:WP_000378283.1;Name=WP_000378283.1;Ontology_term=GO:0032977,GO:0016020;gbkey=CDS;gene=yidC;go_component=membrane|0016020||IEA;go_function=membrane insertase activity|0032977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462742.1;locus_tag=C9E96_RS10860;product=membrane protein insertase YidC;protein_id=WP_000378283.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	8022	9386	.	+	.	ID=gene-C9E96_RS10865;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=C9E96_RS10865;old_locus_tag=C9E96_11110
NZ_PYJX01000128.1	Protein Homology	CDS	8022	9386	.	+	0	ID=cds-WP_000019079.1;Parent=gene-C9E96_RS10865;Dbxref=GenBank:WP_000019079.1;Name=WP_000019079.1;Ontology_term=GO:0006400,GO:0003924,GO:0005515,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,protein binding|0005515||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462743.1;locus_tag=C9E96_RS10865;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=WP_000019079.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	9642	10865	.	+	.	ID=gene-C9E96_RS10870;Name=C9E96_RS10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10870;old_locus_tag=C9E96_11115
NZ_PYJX01000128.1	Protein Homology	CDS	9642	10865	.	+	0	ID=cds-WP_080159409.1;Parent=gene-C9E96_RS10870;Dbxref=GenBank:WP_080159409.1;Name=WP_080159409.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001218309.1;locus_tag=C9E96_RS10870;product=tyrosine-type recombinase/integrase;protein_id=WP_080159409.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	10950	11513	.	-	.	ID=gene-C9E96_RS10875;Name=C9E96_RS10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10875;old_locus_tag=C9E96_11120
NZ_PYJX01000128.1	Protein Homology	CDS	10950	11513	.	-	0	ID=cds-WP_061378616.1;Parent=gene-C9E96_RS10875;Dbxref=GenBank:WP_061378616.1;Name=WP_061378616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015959180.1;locus_tag=C9E96_RS10875;product=hypothetical protein;protein_id=WP_061378616.1;transl_table=11
NZ_PYJX01000128.1	RefSeq	gene	11758	12168	.	-	.	ID=gene-C9E96_RS10880;Name=C9E96_RS10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10880;old_locus_tag=C9E96_11125
NZ_PYJX01000128.1	Protein Homology	CDS	11758	12168	.	-	0	ID=cds-WP_080203977.1;Parent=gene-C9E96_RS10880;Dbxref=GenBank:WP_080203977.1;Name=WP_080203977.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000896275.1;locus_tag=C9E96_RS10880;product=hypothetical protein;protein_id=WP_080203977.1;transl_table=11
##sequence-region NZ_PYJX01000120.1 1 60950
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000120.1	RefSeq	region	1	60950	.	+	.	ID=NZ_PYJX01000120.1:1..60950;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000120.1	RefSeq	pseudogene	1	197	.	-	.	ID=gene-C9E96_RS10135;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=pseudogene;locus_tag=C9E96_RS10135;old_locus_tag=C9E96_10355;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000120.1	Protein Homology	CDS	1	197	.	-	0	ID=cds-C9E96_RS10135;Parent=gene-C9E96_RS10135;Note=required for the assembly of the flagellar basal body P-ring%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=flgA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129055.1;locus_tag=C9E96_RS10135;partial=true;product=flagellar basal body P-ring formation chaperone FlgA;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	354	770	.	+	.	ID=gene-C9E96_RS10140;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=C9E96_RS10140;old_locus_tag=C9E96_10365
NZ_PYJX01000120.1	Protein Homology	CDS	354	770	.	+	0	ID=cds-WP_000887043.1;Parent=gene-C9E96_RS10140;Dbxref=GenBank:WP_000887043.1;Name=WP_000887043.1;Ontology_term=GO:0071973,GO:0030694;gbkey=CDS;gene=flgB;go_component=bacterial-type flagellum basal body%2C rod|0030694||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460145.1;locus_tag=C9E96_RS10140;product=flagellar basal body rod protein FlgB;protein_id=WP_000887043.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	774	1178	.	+	.	ID=gene-C9E96_RS10145;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=C9E96_RS10145;old_locus_tag=C9E96_10370
NZ_PYJX01000120.1	Protein Homology	CDS	774	1178	.	+	0	ID=cds-WP_001196448.1;Parent=gene-C9E96_RS10145;Dbxref=GenBank:WP_001196448.1;Name=WP_001196448.1;Ontology_term=GO:0071973,GO:0030694;gbkey=CDS;gene=flgC;go_component=bacterial-type flagellum basal body%2C rod|0030694||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740734.1;locus_tag=C9E96_RS10145;product=flagellar basal body rod protein FlgC;protein_id=WP_001196448.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	1190	1888	.	+	.	ID=gene-C9E96_RS10150;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=C9E96_RS10150;old_locus_tag=C9E96_10375
NZ_PYJX01000120.1	Protein Homology	CDS	1190	1888	.	+	0	ID=cds-WP_000020450.1;Parent=gene-C9E96_RS10150;Dbxref=GenBank:WP_000020450.1;Name=WP_000020450.1;gbkey=CDS;gene=flgD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460147.1;locus_tag=C9E96_RS10150;product=flagellar hook assembly protein FlgD;protein_id=WP_000020450.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	1915	3126	.	+	.	ID=gene-C9E96_RS10155;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=C9E96_RS10155;old_locus_tag=C9E96_10380
NZ_PYJX01000120.1	Protein Homology	CDS	1915	3126	.	+	0	ID=cds-WP_000010563.1;Parent=gene-C9E96_RS10155;Dbxref=GenBank:WP_000010563.1;Name=WP_000010563.1;gbkey=CDS;gene=flgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460148.1;locus_tag=C9E96_RS10155;product=flagellar hook protein FlgE;protein_id=WP_000010563.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	3147	3902	.	+	.	ID=gene-C9E96_RS10160;Name=C9E96_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10160;old_locus_tag=C9E96_10385
NZ_PYJX01000120.1	Protein Homology	CDS	3147	3902	.	+	0	ID=cds-WP_000349278.1;Parent=gene-C9E96_RS10160;Dbxref=GenBank:WP_000349278.1;Name=WP_000349278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460149.1;locus_tag=C9E96_RS10160;product=flagellar basal body rod protein FlgF;protein_id=WP_000349278.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	3916	4698	.	+	.	ID=gene-C9E96_RS10165;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=C9E96_RS10165;old_locus_tag=C9E96_10390
NZ_PYJX01000120.1	Protein Homology	CDS	3916	4698	.	+	0	ID=cds-WP_000625851.1;Parent=gene-C9E96_RS10165;Dbxref=GenBank:WP_000625851.1;Name=WP_000625851.1;Ontology_term=GO:0071973,GO:0009426;gbkey=CDS;gene=flgG;go_component=bacterial-type flagellum basal body%2C distal rod|0009426||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006819466.1;locus_tag=C9E96_RS10165;product=flagellar basal-body rod protein FlgG;protein_id=WP_000625851.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	4752	5450	.	+	.	ID=gene-C9E96_RS10170;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=C9E96_RS10170;old_locus_tag=C9E96_10395
NZ_PYJX01000120.1	Protein Homology	CDS	4752	5450	.	+	0	ID=cds-WP_001174897.1;Parent=gene-C9E96_RS10170;Dbxref=GenBank:WP_001174897.1;Name=WP_001174897.1;Ontology_term=GO:0071973,GO:0003774,GO:0009427;gbkey=CDS;gene=flgH;go_component=bacterial-type flagellum basal body%2C distal rod%2C L ring|0009427||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460151.1;locus_tag=C9E96_RS10170;product=flagellar basal body L-ring protein FlgH;protein_id=WP_001174897.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	5462	6559	.	+	.	ID=gene-C9E96_RS10175;Name=C9E96_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10175;old_locus_tag=C9E96_10400
NZ_PYJX01000120.1	Protein Homology	CDS	5462	6559	.	+	0	ID=cds-WP_023217140.1;Parent=gene-C9E96_RS10175;Dbxref=GenBank:WP_023217140.1;Name=WP_023217140.1;Ontology_term=GO:0071973,GO:0005198,GO:0009428,GO:0030288;gbkey=CDS;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA,outer membrane-bounded periplasmic space|0030288||IEA;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460152.1;locus_tag=C9E96_RS10175;product=flagellar basal body P-ring protein FlgI;protein_id=WP_023217140.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	6559	7509	.	+	.	ID=gene-C9E96_RS10180;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=C9E96_RS10180;old_locus_tag=C9E96_10405
NZ_PYJX01000120.1	Protein Homology	CDS	6559	7509	.	+	0	ID=cds-WP_000578685.1;Parent=gene-C9E96_RS10180;Dbxref=GenBank:WP_000578685.1;Name=WP_000578685.1;Ontology_term=GO:0044780,GO:0016798;gbkey=CDS;gene=flgJ;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460153.1;locus_tag=C9E96_RS10180;product=flagellar assembly peptidoglycan hydrolase FlgJ;protein_id=WP_000578685.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	7574	9235	.	+	.	ID=gene-C9E96_RS10185;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=C9E96_RS10185;old_locus_tag=C9E96_10410
NZ_PYJX01000120.1	Protein Homology	CDS	7574	9235	.	+	0	ID=cds-WP_000096425.1;Parent=gene-C9E96_RS10185;Dbxref=GenBank:WP_000096425.1;Name=WP_000096425.1;Ontology_term=GO:0044780,GO:0005198,GO:0009424;gbkey=CDS;gene=flgK;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460154.1;locus_tag=C9E96_RS10185;product=flagellar hook-associated protein FlgK;protein_id=WP_000096425.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	9250	10203	.	+	.	ID=gene-C9E96_RS10190;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=C9E96_RS10190;old_locus_tag=C9E96_10415
NZ_PYJX01000120.1	Protein Homology	CDS	9250	10203	.	+	0	ID=cds-WP_135494176.1;Parent=gene-C9E96_RS10190;Dbxref=GenBank:WP_135494176.1;Name=WP_135494176.1;Ontology_term=GO:0001539,GO:0005198,GO:0009424;gbkey=CDS;gene=flgL;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460155.1;locus_tag=C9E96_RS10190;product=flagellar hook-associated protein FlgL;protein_id=WP_135494176.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	10450	13656	.	-	.	ID=gene-C9E96_RS10195;Name=rne;gbkey=Gene;gene=rne;gene_biotype=protein_coding;locus_tag=C9E96_RS10195;old_locus_tag=C9E96_10425
NZ_PYJX01000120.1	Protein Homology	CDS	10450	13656	.	-	0	ID=cds-WP_080203916.1;Parent=gene-C9E96_RS10195;Dbxref=GenBank:WP_080203916.1;Name=WP_080203916.1;Ontology_term=GO:0006396,GO:0003723,GO:0008995;gbkey=CDS;gene=rne;go_function=RNA binding|0003723||IEA,ribonuclease E activity|0008995||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460156.1;locus_tag=C9E96_RS10195;product=ribonuclease E;protein_id=WP_080203916.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	14230	15189	.	+	.	ID=gene-C9E96_RS10205;Name=rluC;gbkey=Gene;gene=rluC;gene_biotype=protein_coding;locus_tag=C9E96_RS10205;old_locus_tag=C9E96_10435
NZ_PYJX01000120.1	Protein Homology	CDS	14230	15189	.	+	0	ID=cds-WP_000846314.1;Parent=gene-C9E96_RS10205;Dbxref=GenBank:WP_000846314.1;Name=WP_000846314.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluC;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460157.1;locus_tag=C9E96_RS10205;product=23S rRNA pseudouridine(955/2504/2580) synthase RluC;protein_id=WP_000846314.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	15345	16088	.	+	.	ID=gene-C9E96_RS10210;Name=C9E96_RS10210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10210;old_locus_tag=C9E96_10440
NZ_PYJX01000120.1	Protein Homology	CDS	15345	16088	.	+	0	ID=cds-WP_023602527.1;Parent=gene-C9E96_RS10210;Dbxref=GenBank:WP_023602527.1;Name=WP_023602527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460158.1;locus_tag=C9E96_RS10210;product=DUF3053 domain-containing protein;protein_id=WP_023602527.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	16586	17170	.	-	.	ID=gene-C9E96_RS10220;Name=C9E96_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10220;old_locus_tag=C9E96_10450
NZ_PYJX01000120.1	Protein Homology	CDS	16586	17170	.	-	0	ID=cds-WP_001137604.1;Parent=gene-C9E96_RS10220;Dbxref=GenBank:WP_001137604.1;Name=WP_001137604.1;Ontology_term=GO:0009117,GO:0009146,GO:0000166,GO:0047429;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleotide metabolic process|0009117||IEA,purine nucleoside triphosphate catabolic process|0009146||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460159.1;locus_tag=C9E96_RS10220;product=Maf family protein;protein_id=WP_001137604.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	17368	17889	.	+	.	ID=gene-C9E96_RS10225;Name=yceD;gbkey=Gene;gene=yceD;gene_biotype=protein_coding;locus_tag=C9E96_RS10225;old_locus_tag=C9E96_10455
NZ_PYJX01000120.1	Protein Homology	CDS	17368	17889	.	+	0	ID=cds-WP_001174492.1;Parent=gene-C9E96_RS10225;Dbxref=GenBank:WP_001174492.1;Name=WP_001174492.1;gbkey=CDS;gene=yceD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001174481.1;locus_tag=C9E96_RS10225;product=23S rRNA accumulation protein YceD;protein_id=WP_001174492.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	17941	18114	.	+	.	ID=gene-C9E96_RS10230;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=C9E96_RS10230;old_locus_tag=C9E96_10460
NZ_PYJX01000120.1	Protein Homology	CDS	17941	18114	.	+	0	ID=cds-WP_000290727.1;Parent=gene-C9E96_RS10230;Dbxref=GenBank:WP_000290727.1;Name=WP_000290727.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmF;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125993.1;locus_tag=C9E96_RS10230;product=50S ribosomal protein L32;protein_id=WP_000290727.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	18248	19327	.	+	.	ID=gene-C9E96_RS10235;Name=plsX;gbkey=Gene;gene=plsX;gene_biotype=protein_coding;locus_tag=C9E96_RS10235;old_locus_tag=C9E96_10465
NZ_PYJX01000120.1	Protein Homology	CDS	18248	19327	.	+	0	ID=cds-WP_001518286.1;Parent=gene-C9E96_RS10235;Dbxref=GenBank:WP_001518286.1;Name=WP_001518286.1;Ontology_term=GO:0008610,GO:0043811;gbkey=CDS;gene=plsX;go_function=phosphate:acyl-[acyl carrier protein] acyltransferase activity|0043811||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460162.1;locus_tag=C9E96_RS10235;product=phosphate acyltransferase PlsX;protein_id=WP_001518286.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	19407	20360	.	+	.	ID=gene-C9E96_RS10240;Name=fabH;gbkey=Gene;gene=fabH;gene_biotype=protein_coding;locus_tag=C9E96_RS10240;old_locus_tag=C9E96_10470
NZ_PYJX01000120.1	Protein Homology	CDS	19407	20360	.	+	0	ID=cds-WP_000288148.1;Parent=gene-C9E96_RS10240;Dbxref=GenBank:WP_000288148.1;Name=WP_000288148.1;gbkey=CDS;gene=fabH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129019.1;locus_tag=C9E96_RS10240;product=beta-ketoacyl-ACP synthase III;protein_id=WP_000288148.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	20376	21305	.	+	.	ID=gene-C9E96_RS10245;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=C9E96_RS10245;old_locus_tag=C9E96_10475
NZ_PYJX01000120.1	Protein Homology	CDS	20376	21305	.	+	0	ID=cds-WP_001529843.1;Parent=gene-C9E96_RS10245;Dbxref=GenBank:WP_001529843.1;Name=WP_001529843.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460164.1;locus_tag=C9E96_RS10245;product=ACP S-malonyltransferase;protein_id=WP_001529843.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	21318	22052	.	+	.	ID=gene-C9E96_RS10250;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=C9E96_RS10250;old_locus_tag=C9E96_10480
NZ_PYJX01000120.1	Protein Homology	CDS	21318	22052	.	+	0	ID=cds-WP_000007236.1;Parent=gene-C9E96_RS10250;Dbxref=GenBank:WP_000007236.1;Name=WP_000007236.1;Ontology_term=GO:0006633,GO:0004316,GO:0051287;gbkey=CDS;gene=fabG;go_function=3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|0004316||IEA,NAD binding|0051287||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129017.1;locus_tag=C9E96_RS10250;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_000007236.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	22208	22444	.	+	.	ID=gene-C9E96_RS10255;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=C9E96_RS10255;old_locus_tag=C9E96_10485
NZ_PYJX01000120.1	Protein Homology	CDS	22208	22444	.	+	0	ID=cds-WP_000103754.1;Parent=gene-C9E96_RS10255;Dbxref=GenBank:WP_000103754.1;Name=WP_000103754.1;Ontology_term=GO:0006633;gbkey=CDS;gene=acpP;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016535861.1;locus_tag=C9E96_RS10255;product=acyl carrier protein;protein_id=WP_000103754.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	22530	23771	.	+	.	ID=gene-C9E96_RS10260;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=C9E96_RS10260;old_locus_tag=C9E96_10490
NZ_PYJX01000120.1	Protein Homology	CDS	22530	23771	.	+	0	ID=cds-WP_000044664.1;Parent=gene-C9E96_RS10260;Dbxref=GenBank:WP_000044664.1;Name=WP_000044664.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460167.1;locus_tag=C9E96_RS10260;product=beta-ketoacyl-ACP synthase II;protein_id=WP_000044664.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	23895	24704	.	+	.	ID=gene-C9E96_RS10265;Name=pabC;gbkey=Gene;gene=pabC;gene_biotype=protein_coding;locus_tag=C9E96_RS10265;old_locus_tag=C9E96_10495
NZ_PYJX01000120.1	Protein Homology	CDS	23895	24704	.	+	0	ID=cds-WP_000478660.1;Parent=gene-C9E96_RS10265;Dbxref=GenBank:WP_000478660.1;Name=WP_000478660.1;Ontology_term=GO:0046656,GO:0008696,GO:0030170;gbkey=CDS;gene=pabC;go_function=4-amino-4-deoxychorismate lyase activity|0008696||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=folic acid biosynthetic process|0046656||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460168.1;locus_tag=C9E96_RS10265;product=aminodeoxychorismate lyase;protein_id=WP_000478660.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	24707	25729	.	+	.	ID=gene-C9E96_RS10270;Name=yceG;gbkey=Gene;gene=yceG;gene_biotype=protein_coding;locus_tag=C9E96_RS10270;old_locus_tag=C9E96_10500
NZ_PYJX01000120.1	Protein Homology	CDS	24707	25729	.	+	0	ID=cds-WP_023993488.1;Parent=gene-C9E96_RS10270;Dbxref=GenBank:WP_023993488.1;Name=WP_023993488.1;gbkey=CDS;gene=yceG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460169.1;locus_tag=C9E96_RS10270;product=cell division protein YceG;protein_id=WP_023993488.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	25719	26360	.	+	.	ID=gene-C9E96_RS10275;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=C9E96_RS10275;old_locus_tag=C9E96_10505
NZ_PYJX01000120.1	Protein Homology	CDS	25719	26360	.	+	0	ID=cds-WP_135494178.1;Parent=gene-C9E96_RS10275;Dbxref=GenBank:WP_135494178.1;Name=WP_135494178.1;Ontology_term=GO:0006233,GO:0004798,GO:0005524;gbkey=CDS;gene=tmk;go_function=dTMP kinase activity|0004798||IEA,ATP binding|0005524||IEA;go_process=dTDP biosynthetic process|0006233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460170.1;locus_tag=C9E96_RS10275;product=dTMP kinase;protein_id=WP_135494178.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	26357	27361	.	+	.	ID=gene-C9E96_RS10280;Name=holB;gbkey=Gene;gene=holB;gene_biotype=protein_coding;locus_tag=C9E96_RS10280;old_locus_tag=C9E96_10510
NZ_PYJX01000120.1	Protein Homology	CDS	26357	27361	.	+	0	ID=cds-WP_000872450.1;Parent=gene-C9E96_RS10280;Dbxref=GenBank:WP_000872450.1;Name=WP_000872450.1;Ontology_term=GO:0006260,GO:0003887,GO:0008408;gbkey=CDS;gene=holB;go_function=DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460171.1;locus_tag=C9E96_RS10280;product=DNA polymerase III subunit delta';protein_id=WP_000872450.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	27372	28169	.	+	.	ID=gene-C9E96_RS10285;Name=C9E96_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10285;old_locus_tag=C9E96_10515
NZ_PYJX01000120.1	Protein Homology	CDS	27372	28169	.	+	0	ID=cds-WP_000480268.1;Parent=gene-C9E96_RS10285;Dbxref=GenBank:WP_000480268.1;Name=WP_000480268.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460172.1;locus_tag=C9E96_RS10285;product=metal-dependent hydrolase;protein_id=WP_000480268.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	28464	29897	.	+	.	ID=gene-C9E96_RS10290;Name=ptsG;gbkey=Gene;gene=ptsG;gene_biotype=protein_coding;locus_tag=C9E96_RS10290;old_locus_tag=C9E96_10520
NZ_PYJX01000120.1	Protein Homology	CDS	28464	29897	.	+	0	ID=cds-WP_000475705.1;Parent=gene-C9E96_RS10290;Dbxref=GenBank:WP_000475705.1;Name=WP_000475705.1;Ontology_term=GO:0009401,GO:1904659,GO:0008982,GO:0055056;gbkey=CDS;gene=ptsG;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,D-glucose transmembrane transporter activity|0055056||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,D-glucose transmembrane transport|1904659||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460173.1;locus_tag=C9E96_RS10290;product=PTS glucose transporter subunit IIBC;protein_id=WP_000475705.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	29982	32156	.	-	.	ID=gene-C9E96_RS10295;Name=fhuE;gbkey=Gene;gene=fhuE;gene_biotype=protein_coding;locus_tag=C9E96_RS10295;old_locus_tag=C9E96_10525
NZ_PYJX01000120.1	Protein Homology	CDS	29982	32156	.	-	0	ID=cds-WP_000008399.1;Parent=gene-C9E96_RS10295;Dbxref=GenBank:WP_000008399.1;Name=WP_000008399.1;Ontology_term=GO:0015891,GO:0015344,GO:0038023,GO:0009279;gbkey=CDS;gene=fhuE;go_component=cell outer membrane|0009279||IEA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460174.1;locus_tag=C9E96_RS10295;product=ferric-rhodotorulic acid/ferric-coprogen receptor FhuE;protein_id=WP_000008399.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	32498	32857	.	+	.	ID=gene-C9E96_RS10300;Name=hinT;gbkey=Gene;gene=hinT;gene_biotype=protein_coding;locus_tag=C9E96_RS10300;old_locus_tag=C9E96_10530
NZ_PYJX01000120.1	Protein Homology	CDS	32498	32857	.	+	0	ID=cds-WP_001532068.1;Parent=gene-C9E96_RS10300;Dbxref=GenBank:WP_001532068.1;Name=WP_001532068.1;gbkey=CDS;gene=hinT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460175.1;locus_tag=C9E96_RS10300;product=purine nucleoside phosphoramidase;protein_id=WP_001532068.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	32860	33234	.	+	.	ID=gene-C9E96_RS10305;Name=C9E96_RS10305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10305;old_locus_tag=C9E96_10535
NZ_PYJX01000120.1	Protein Homology	CDS	32860	33234	.	+	0	ID=cds-WP_000589563.1;Parent=gene-C9E96_RS10305;Dbxref=GenBank:WP_000589563.1;Name=WP_000589563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460176.1;locus_tag=C9E96_RS10305;product=YcfL family protein;protein_id=WP_000589563.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	33248	33886	.	+	.	ID=gene-C9E96_RS10310;Name=lpoB;gbkey=Gene;gene=lpoB;gene_biotype=protein_coding;locus_tag=C9E96_RS10310;old_locus_tag=C9E96_10540
NZ_PYJX01000120.1	Protein Homology	CDS	33248	33886	.	+	0	ID=cds-WP_000164355.1;Parent=gene-C9E96_RS10310;Dbxref=GenBank:WP_000164355.1;Name=WP_000164355.1;gbkey=CDS;gene=lpoB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460177.1;locus_tag=C9E96_RS10310;product=penicillin-binding protein activator LpoB;protein_id=WP_000164355.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	33867	34691	.	+	.	ID=gene-C9E96_RS10315;Name=thiK;gbkey=Gene;gene=thiK;gene_biotype=protein_coding;locus_tag=C9E96_RS10315;old_locus_tag=C9E96_10545
NZ_PYJX01000120.1	Protein Homology	CDS	33867	34691	.	+	0	ID=cds-WP_001257334.1;Parent=gene-C9E96_RS10315;Dbxref=GenBank:WP_001257334.1;Name=WP_001257334.1;Ontology_term=GO:0006772,GO:0016310,GO:0019165;gbkey=CDS;gene=thiK;go_function=thiamine kinase activity|0019165||IEA;go_process=thiamine metabolic process|0006772||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460178.1;locus_tag=C9E96_RS10315;product=thiamine kinase;protein_id=WP_001257334.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	34702	35727	.	+	.	ID=gene-C9E96_RS10320;Name=nagZ;gbkey=Gene;gene=nagZ;gene_biotype=protein_coding;locus_tag=C9E96_RS10320;old_locus_tag=C9E96_10550
NZ_PYJX01000120.1	Protein Homology	CDS	34702	35727	.	+	0	ID=cds-WP_000529340.1;Parent=gene-C9E96_RS10320;Dbxref=GenBank:WP_000529340.1;Name=WP_000529340.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=nagZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460179.1;locus_tag=C9E96_RS10320;product=beta-N-acetylhexosaminidase;protein_id=WP_000529340.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	35752	36294	.	+	.	ID=gene-C9E96_RS10325;Name=ycfP;gbkey=Gene;gene=ycfP;gene_biotype=protein_coding;locus_tag=C9E96_RS10325;old_locus_tag=C9E96_10555
NZ_PYJX01000120.1	Protein Homology	CDS	35752	36294	.	+	0	ID=cds-WP_000587943.1;Parent=gene-C9E96_RS10325;Dbxref=GenBank:WP_000587943.1;Name=WP_000587943.1;gbkey=CDS;gene=ycfP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126033.1;locus_tag=C9E96_RS10325;product=alpha/beta hydrolase YcfP;protein_id=WP_000587943.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	36548	37852	.	+	.	ID=gene-C9E96_RS10330;Name=ndh;gbkey=Gene;gene=ndh;gene_biotype=protein_coding;locus_tag=C9E96_RS10330;old_locus_tag=C9E96_10560
NZ_PYJX01000120.1	Protein Homology	CDS	36548	37852	.	+	0	ID=cds-WP_000211053.1;Parent=gene-C9E96_RS10330;Dbxref=GenBank:WP_000211053.1;Name=WP_000211053.1;gbkey=CDS;gene=ndh;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017384716.1;locus_tag=C9E96_RS10330;product=NADH-quinone dehydrogenase;protein_id=WP_000211053.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	38031	38570	.	+	.	ID=gene-C9E96_RS10335;Name=C9E96_RS10335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10335;old_locus_tag=C9E96_10565
NZ_PYJX01000120.1	Protein Homology	CDS	38031	38570	.	+	0	ID=cds-WP_080203917.1;Parent=gene-C9E96_RS10335;Dbxref=GenBank:WP_080203917.1;Name=WP_080203917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460182.1;locus_tag=C9E96_RS10335;product=glycine zipper 2TM domain-containing protein;protein_id=WP_080203917.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	38645	39280	.	-	.	ID=gene-C9E96_RS10340;Name=comR;gbkey=Gene;gene=comR;gene_biotype=protein_coding;locus_tag=C9E96_RS10340;old_locus_tag=C9E96_10570
NZ_PYJX01000120.1	Protein Homology	CDS	38645	39280	.	-	0	ID=cds-WP_000205986.1;Parent=gene-C9E96_RS10340;Dbxref=GenBank:WP_000205986.1;Name=WP_000205986.1;gbkey=CDS;gene=comR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460183.1;locus_tag=C9E96_RS10340;product=TetR family copper-responsive transcriptional repressor ComR;protein_id=WP_000205986.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	39522	39779	.	+	.	ID=gene-C9E96_RS10345;Name=bhsA;gbkey=Gene;gene=bhsA;gene_biotype=protein_coding;locus_tag=C9E96_RS10345;old_locus_tag=C9E96_10575
NZ_PYJX01000120.1	Protein Homology	CDS	39522	39779	.	+	0	ID=cds-WP_000800159.1;Parent=gene-C9E96_RS10345;Dbxref=GenBank:WP_000800159.1;Name=WP_000800159.1;Ontology_term=GO:0006950,GO:0046688;gbkey=CDS;gene=bhsA;go_process=response to stress|0006950||IEA,response to copper ion|0046688||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460184.1;locus_tag=C9E96_RS10345;product=multiple stress resistance protein BhsA;protein_id=WP_000800159.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	39876	40841	.	-	.	ID=gene-C9E96_RS10350;Name=ldtC;gbkey=Gene;gene=ldtC;gene_biotype=protein_coding;locus_tag=C9E96_RS10350;old_locus_tag=C9E96_10580
NZ_PYJX01000120.1	Protein Homology	CDS	39876	40841	.	-	0	ID=cds-WP_000482969.1;Parent=gene-C9E96_RS10350;Dbxref=GenBank:WP_000482969.1;Name=WP_000482969.1;gbkey=CDS;gene=ldtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460185.1;locus_tag=C9E96_RS10350;product=L%2CD-transpeptidase LdtC;protein_id=WP_000482969.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	40989	44435	.	-	.	ID=gene-C9E96_RS10355;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=C9E96_RS10355;old_locus_tag=C9E96_10585
NZ_PYJX01000120.1	Protein Homology	CDS	40989	44435	.	-	0	ID=cds-WP_001114323.1;Parent=gene-C9E96_RS10355;Dbxref=GenBank:WP_001114323.1;Name=WP_001114323.1;Ontology_term=GO:0006281,GO:0003676,GO:0003684,GO:0005524;gbkey=CDS;gene=mfd;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460186.1;locus_tag=C9E96_RS10355;product=transcription-repair coupling factor;protein_id=WP_001114323.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	44773	45972	.	+	.	ID=gene-C9E96_RS10360;Name=lolC;gbkey=Gene;gene=lolC;gene_biotype=protein_coding;locus_tag=C9E96_RS10360;old_locus_tag=C9E96_10590
NZ_PYJX01000120.1	Protein Homology	CDS	44773	45972	.	+	0	ID=cds-WP_001518787.1;Parent=gene-C9E96_RS10360;Dbxref=GenBank:WP_001518787.1;Name=WP_001518787.1;Ontology_term=GO:0042953,GO:0016020;gbkey=CDS;gene=lolC;go_component=membrane|0016020||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004976588.1;locus_tag=C9E96_RS10360;product=lipoprotein-releasing ABC transporter permease subunit LolC;protein_id=WP_001518787.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	45965	46666	.	+	.	ID=gene-C9E96_RS10365;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=C9E96_RS10365;old_locus_tag=C9E96_10595
NZ_PYJX01000120.1	Protein Homology	CDS	45965	46666	.	+	0	ID=cds-WP_135494180.1;Parent=gene-C9E96_RS10365;Dbxref=GenBank:WP_135494180.1;Name=WP_135494180.1;Ontology_term=GO:0042953,GO:0005524,GO:0016020;gbkey=CDS;gene=lolD;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460188.1;locus_tag=C9E96_RS10365;product=lipoprotein-releasing ABC transporter ATP-binding protein LolD;protein_id=WP_135494180.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	46666	47910	.	+	.	ID=gene-C9E96_RS10370;Name=lolE;gbkey=Gene;gene=lolE;gene_biotype=protein_coding;locus_tag=C9E96_RS10370;old_locus_tag=C9E96_10600
NZ_PYJX01000120.1	Protein Homology	CDS	46666	47910	.	+	0	ID=cds-WP_000168091.1;Parent=gene-C9E96_RS10370;Dbxref=GenBank:WP_000168091.1;Name=WP_000168091.1;Ontology_term=GO:0042953;gbkey=CDS;gene=lolE;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460189.1;locus_tag=C9E96_RS10370;product=lipoprotein-releasing ABC transporter permease subunit LolE;protein_id=WP_000168091.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	47939	48850	.	+	.	ID=gene-C9E96_RS10375;Name=nagK;gbkey=Gene;gene=nagK;gene_biotype=protein_coding;locus_tag=C9E96_RS10375;old_locus_tag=C9E96_10605
NZ_PYJX01000120.1	Protein Homology	CDS	47939	48850	.	+	0	ID=cds-WP_000291332.1;Parent=gene-C9E96_RS10375;Dbxref=GenBank:WP_000291332.1;Name=WP_000291332.1;Ontology_term=GO:0045127;gbkey=CDS;gene=nagK;go_function=N-acetylglucosamine kinase activity|0045127||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460190.1;locus_tag=C9E96_RS10375;product=N-acetylglucosamine kinase;protein_id=WP_000291332.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	48869	49690	.	+	.	ID=gene-C9E96_RS10380;Name=cobB;gbkey=Gene;gene=cobB;gene_biotype=protein_coding;locus_tag=C9E96_RS10380;old_locus_tag=C9E96_10610
NZ_PYJX01000120.1	Protein Homology	CDS	48869	49690	.	+	0	ID=cds-WP_001191856.1;Parent=gene-C9E96_RS10380;Dbxref=GenBank:WP_001191856.1;Name=WP_001191856.1;Ontology_term=GO:0070403;gbkey=CDS;gene=cobB;go_function=NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460191.1;locus_tag=C9E96_RS10380;product=Sir2 family NAD+-dependent deacetylase;protein_id=WP_001191856.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	49772	50818	.	-	.	ID=gene-C9E96_RS10385;Name=potD;gbkey=Gene;gene=potD;gene_biotype=protein_coding;locus_tag=C9E96_RS10385;old_locus_tag=C9E96_10615
NZ_PYJX01000120.1	Protein Homology	CDS	49772	50818	.	-	0	ID=cds-WP_000759329.1;Parent=gene-C9E96_RS10385;Dbxref=GenBank:WP_000759329.1;Name=WP_000759329.1;Ontology_term=GO:0015846,GO:0019808,GO:0042597;gbkey=CDS;gene=potD;go_component=periplasmic space|0042597||IEA;go_function=polyamine binding|0019808||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121082.1;locus_tag=C9E96_RS10385;product=spermidine/putrescine ABC transporter substrate-binding protein PotD;protein_id=WP_000759329.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	50843	51622	.	-	.	ID=gene-C9E96_RS10390;Name=potC;gbkey=Gene;gene=potC;gene_biotype=protein_coding;locus_tag=C9E96_RS10390;old_locus_tag=C9E96_10620
NZ_PYJX01000120.1	Protein Homology	CDS	50843	51622	.	-	0	ID=cds-WP_000580299.1;Parent=gene-C9E96_RS10390;Dbxref=GenBank:WP_000580299.1;Name=WP_000580299.1;Ontology_term=GO:0055085;gbkey=CDS;gene=potC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460193.1;locus_tag=C9E96_RS10390;product=spermidine/putrescine ABC transporter permease PotC;protein_id=WP_000580299.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	51938	52948	.	-	.	ID=gene-C9E96_RS10395;Name=sifA;gbkey=Gene;gene=sifA;gene_biotype=protein_coding;locus_tag=C9E96_RS10395;old_locus_tag=C9E96_10625
NZ_PYJX01000120.1	Protein Homology	CDS	51938	52948	.	-	0	ID=cds-WP_001533329.1;Parent=gene-C9E96_RS10395;Dbxref=GenBank:WP_001533329.1;Name=WP_001533329.1;gbkey=CDS;gene=sifA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460194.1;locus_tag=C9E96_RS10395;product=SPI-2 type III secretion system effector SifA;protein_id=WP_001533329.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	53277	54140	.	-	.	ID=gene-C9E96_RS10400;Name=potB;gbkey=Gene;gene=potB;gene_biotype=protein_coding;locus_tag=C9E96_RS10400;old_locus_tag=C9E96_10630
NZ_PYJX01000120.1	Protein Homology	CDS	53277	54140	.	-	0	ID=cds-WP_000799391.1;Parent=gene-C9E96_RS10400;Dbxref=GenBank:WP_000799391.1;Name=WP_000799391.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=potB;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460195.1;locus_tag=C9E96_RS10400;product=spermidine/putrescine ABC transporter permease PotB;protein_id=WP_000799391.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	54124	55260	.	-	.	ID=gene-C9E96_RS10405;Name=potA;gbkey=Gene;gene=potA;gene_biotype=protein_coding;locus_tag=C9E96_RS10405;old_locus_tag=C9E96_10635
NZ_PYJX01000120.1	Protein Homology	CDS	54124	55260	.	-	0	ID=cds-WP_000531607.1;Parent=gene-C9E96_RS10405;Dbxref=GenBank:WP_000531607.1;Name=WP_000531607.1;Ontology_term=GO:0015846,GO:0005524,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=potA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460196.1;locus_tag=C9E96_RS10405;product=spermidine/putrescine ABC transporter ATP-binding protein PotA;protein_id=WP_000531607.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	55511	56740	.	+	.	ID=gene-C9E96_RS10410;Name=pepT;gbkey=Gene;gene=pepT;gene_biotype=protein_coding;locus_tag=C9E96_RS10410;old_locus_tag=C9E96_10640
NZ_PYJX01000120.1	Protein Homology	CDS	55511	56740	.	+	0	ID=cds-WP_000359412.1;Parent=gene-C9E96_RS10410;Dbxref=GenBank:WP_000359412.1;Name=WP_000359412.1;Ontology_term=GO:0006508,GO:0008270,GO:0045148;gbkey=CDS;gene=pepT;go_function=zinc ion binding|0008270||IEA,tripeptide aminopeptidase activity|0045148||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460197.1;locus_tag=C9E96_RS10410;product=peptidase T;protein_id=WP_000359412.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	56744	58078	.	+	.	ID=gene-C9E96_RS10415;Name=C9E96_RS10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10415;old_locus_tag=C9E96_10645
NZ_PYJX01000120.1	Protein Homology	CDS	56744	58078	.	+	0	ID=cds-WP_080203919.1;Parent=gene-C9E96_RS10415;Dbxref=GenBank:WP_080203919.1;Name=WP_080203919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460198.1;locus_tag=C9E96_RS10415;product=hypothetical protein;protein_id=WP_080203919.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	58118	59239	.	-	.	ID=gene-C9E96_RS10420;Name=roxA;gbkey=Gene;gene=roxA;gene_biotype=protein_coding;gene_synonym=ycfD;locus_tag=C9E96_RS10420;old_locus_tag=C9E96_10650
NZ_PYJX01000120.1	Protein Homology	CDS	58118	59239	.	-	0	ID=cds-WP_000456514.1;Parent=gene-C9E96_RS10420;Dbxref=GenBank:WP_000456514.1;Name=WP_000456514.1;gbkey=CDS;gene=roxA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460199.1;locus_tag=C9E96_RS10420;product=[50S ribosomal protein L16]-arginine 3-hydroxylase;protein_id=WP_000456514.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	59320	60783	.	-	.	ID=gene-C9E96_RS10425;Name=phoQ;gbkey=Gene;gene=phoQ;gene_biotype=protein_coding;locus_tag=C9E96_RS10425;old_locus_tag=C9E96_10655
NZ_PYJX01000120.1	Protein Homology	CDS	59320	60783	.	-	0	ID=cds-WP_001031687.1;Parent=gene-C9E96_RS10425;Dbxref=GenBank:WP_001031687.1;Name=WP_001031687.1;gbkey=CDS;gene=phoQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460200.1;locus_tag=C9E96_RS10425;product=two-component system sensor histidine kinase PhoQ;protein_id=WP_001031687.1;transl_table=11
NZ_PYJX01000120.1	RefSeq	gene	60783	60950	.	-	.	ID=gene-C9E96_RS10430;Name=C9E96_RS10430;end_range=60950,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10430;old_locus_tag=C9E96_10660;partial=true
NZ_PYJX01000120.1	Protein Homology	CDS	60783	60950	.	-	0	ID=cds-WP_210114523.1;Parent=gene-C9E96_RS10430;Dbxref=GenBank:WP_210114523.1;Name=WP_210114523.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;end_range=60950,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309629.1;locus_tag=C9E96_RS10430;partial=true;product=winged helix-turn-helix domain-containing protein;protein_id=WP_210114523.1;transl_table=11
##sequence-region NZ_PYJX01000230.1 1 12403
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000230.1	RefSeq	region	1	12403	.	+	.	ID=NZ_PYJX01000230.1:1..12403;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000230.1	RefSeq	gene	1	928	.	-	.	ID=gene-C9E96_RS22145;Name=C9E96_RS22145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22145;old_locus_tag=C9E96_22690;partial=true;start_range=.,1
NZ_PYJX01000230.1	Protein Homology	CDS	1	928	.	-	0	ID=cds-WP_135494640.1;Parent=gene-C9E96_RS22145;Dbxref=GenBank:WP_135494640.1;Name=WP_135494640.1;Ontology_term=GO:0042908,GO:1990961,GO:0042910,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic transport|0042908||IEA,xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461165.1;locus_tag=C9E96_RS22145;partial=true;product=Bcr/CflA family multidrug efflux MFS transporter;protein_id=WP_135494640.1;start_range=.,1;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	956	1651	.	-	.	ID=gene-C9E96_RS22150;Name=rsuA;gbkey=Gene;gene=rsuA;gene_biotype=protein_coding;locus_tag=C9E96_RS22150;old_locus_tag=C9E96_22695
NZ_PYJX01000230.1	Protein Homology	CDS	956	1651	.	-	0	ID=cds-WP_001234836.1;Parent=gene-C9E96_RS22150;Dbxref=GenBank:WP_001234836.1;Name=WP_001234836.1;gbkey=CDS;gene=rsuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461166.1;locus_tag=C9E96_RS22150;product=16S rRNA pseudouridine(516) synthase RsuA;protein_id=WP_001234836.1;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	1803	3563	.	+	.	ID=gene-C9E96_RS22155;Name=C9E96_RS22155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22155;old_locus_tag=C9E96_22700
NZ_PYJX01000230.1	Protein Homology	CDS	1803	3563	.	+	0	ID=cds-WP_135494643.1;Parent=gene-C9E96_RS22155;Dbxref=GenBank:WP_135494643.1;Name=WP_135494643.1;Ontology_term=GO:0003676,GO:0004386,GO:0005524,GO:0016887;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461167.1;locus_tag=C9E96_RS22155;product=DEAD/DEAH box helicase;protein_id=WP_135494643.1;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	3688	3972	.	+	.	ID=gene-C9E96_RS22160;Name=rplY;gbkey=Gene;gene=rplY;gene_biotype=protein_coding;locus_tag=C9E96_RS22160;old_locus_tag=C9E96_22705
NZ_PYJX01000230.1	Protein Homology	CDS	3688	3972	.	+	0	ID=cds-WP_000494192.1;Parent=gene-C9E96_RS22160;Dbxref=GenBank:WP_000494192.1;Name=WP_000494192.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplY;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000494192.1;locus_tag=C9E96_RS22160;product=50S ribosomal protein L25;protein_id=WP_000494192.1;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	4081	4701	.	-	.	ID=gene-C9E96_RS22165;Name=C9E96_RS22165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22165;old_locus_tag=C9E96_22710
NZ_PYJX01000230.1	Protein Homology	CDS	4081	4701	.	-	0	ID=cds-WP_080183616.1;Parent=gene-C9E96_RS22165;Dbxref=GenBank:WP_080183616.1;Name=WP_080183616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461169.1;locus_tag=C9E96_RS22165;product=hypothetical protein;protein_id=WP_080183616.1;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	4729	5736	.	-	.	ID=gene-C9E96_RS22170;Name=yejK;gbkey=Gene;gene=yejK;gene_biotype=protein_coding;locus_tag=C9E96_RS22170;old_locus_tag=C9E96_22715
NZ_PYJX01000230.1	Protein Homology	CDS	4729	5736	.	-	0	ID=cds-WP_000050806.1;Parent=gene-C9E96_RS22170;Dbxref=GenBank:WP_000050806.1;Name=WP_000050806.1;Ontology_term=GO:0009295;gbkey=CDS;gene=yejK;go_component=nucleoid|0009295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461170.1;locus_tag=C9E96_RS22170;product=nucleoid-associated protein YejK;protein_id=WP_000050806.1;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	5916	6143	.	+	.	ID=gene-C9E96_RS22175;Name=C9E96_RS22175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22175;old_locus_tag=C9E96_22720
NZ_PYJX01000230.1	Protein Homology	CDS	5916	6143	.	+	0	ID=cds-WP_001135904.1;Parent=gene-C9E96_RS22175;Dbxref=GenBank:WP_001135904.1;Name=WP_001135904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461171.1;locus_tag=C9E96_RS22175;product=YejL family protein;protein_id=WP_001135904.1;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	6175	7935	.	+	.	ID=gene-C9E96_RS22180;Name=yejM;gbkey=Gene;gene=yejM;gene_biotype=protein_coding;locus_tag=C9E96_RS22180;old_locus_tag=C9E96_22725
NZ_PYJX01000230.1	Protein Homology	CDS	6175	7935	.	+	0	ID=cds-WP_000256150.1;Parent=gene-C9E96_RS22180;Dbxref=GenBank:WP_000256150.1;Name=WP_000256150.1;Ontology_term=GO:0008484;gbkey=CDS;gene=yejM;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461172.1;locus_tag=C9E96_RS22180;product=LPS biosynthesis-modulating metalloenzyme YejM;protein_id=WP_000256150.1;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	8009	8085	.	+	.	ID=gene-C9E96_RS22185;Name=C9E96_RS22185;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS22185;old_locus_tag=C9E96_22730
NZ_PYJX01000230.1	tRNAscan-SE	tRNA	8009	8085	.	+	.	ID=rna-C9E96_RS22185;Parent=gene-C9E96_RS22185;anticodon=(pos:8043..8045);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS22185;product=tRNA-Pro
NZ_PYJX01000230.1	tRNAscan-SE	exon	8009	8085	.	+	.	ID=exon-C9E96_RS22185-1;Parent=rna-C9E96_RS22185;anticodon=(pos:8043..8045);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS22185;product=tRNA-Pro
NZ_PYJX01000230.1	RefSeq	pseudogene	8396	8618	.	-	.	ID=gene-C9E96_RS22190;Name=C9E96_RS22190;end_range=8618,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS22190;old_locus_tag=C9E96_22735;partial=true;pseudo=true
NZ_PYJX01000230.1	Protein Homology	CDS	8396	8618	.	-	0	ID=cds-C9E96_RS22190;Parent=gene-C9E96_RS22190;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=8618,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460948.1;locus_tag=C9E96_RS22190;partial=true;product=DUF4113 domain-containing protein;pseudo=true;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	8706	10952	.	-	.	ID=gene-C9E96_RS22195;Name=sspH2;gbkey=Gene;gene=sspH2;gene_biotype=protein_coding;locus_tag=C9E96_RS22195;old_locus_tag=C9E96_22745
NZ_PYJX01000230.1	Protein Homology	CDS	8706	10952	.	-	0	ID=cds-WP_135494646.1;Parent=gene-C9E96_RS22195;Dbxref=GenBank:WP_135494646.1;Name=WP_135494646.1;gbkey=CDS;gene=sspH2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461184.1;locus_tag=C9E96_RS22195;product=SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2;protein_id=WP_135494646.1;transl_table=11
NZ_PYJX01000230.1	RefSeq	gene	11121	11324	.	-	.	ID=gene-C9E96_RS22200;Name=C9E96_RS22200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22200;old_locus_tag=C9E96_22750
NZ_PYJX01000230.1	GeneMarkS-2+	CDS	11121	11324	.	-	0	ID=cds-WP_031604253.1;Parent=gene-C9E96_RS22200;Dbxref=GenBank:WP_031604253.1;Name=WP_031604253.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS22200;product=tail protein;protein_id=WP_031604253.1;transl_table=11
NZ_PYJX01000230.1	RefSeq	pseudogene	11950	12403	.	-	.	ID=gene-C9E96_RS22205;Name=C9E96_RS22205;end_range=12403,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS22205;old_locus_tag=C9E96_22755;partial=true;pseudo=true;start_range=.,11950
NZ_PYJX01000230.1	Protein Homology	CDS	11950	12403	.	-	0	ID=cds-C9E96_RS22205;Parent=gene-C9E96_RS22205;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=12403,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461524.1;locus_tag=C9E96_RS22205;partial=true;product=phage tail protein;pseudo=true;start_range=.,11950;transl_table=11
##sequence-region NZ_PYJX01000236.1 1 12309
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000236.1	RefSeq	region	1	12309	.	+	.	ID=NZ_PYJX01000236.1:1..12309;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000236.1	RefSeq	gene	211	2499	.	+	.	ID=gene-C9E96_RS22540;Name=golT;gbkey=Gene;gene=golT;gene_biotype=protein_coding;locus_tag=C9E96_RS22540;old_locus_tag=C9E96_23115
NZ_PYJX01000236.1	Protein Homology	CDS	211	2499	.	+	0	ID=cds-WP_135494685.1;Parent=gene-C9E96_RS22540;Dbxref=GenBank:WP_135494685.1;Name=WP_135494685.1;gbkey=CDS;gene=golT;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000083318.1;locus_tag=C9E96_RS22540;product=gold/copper-translocating P-type ATPase GolT;protein_id=WP_135494685.1;transl_table=11
NZ_PYJX01000236.1	RefSeq	gene	2511	2975	.	+	.	ID=gene-C9E96_RS22545;Name=golS;gbkey=Gene;gene=golS;gene_biotype=protein_coding;locus_tag=C9E96_RS22545;old_locus_tag=C9E96_23120
NZ_PYJX01000236.1	Protein Homology	CDS	2511	2975	.	+	0	ID=cds-WP_001020583.1;Parent=gene-C9E96_RS22545;Dbxref=GenBank:WP_001020583.1;Name=WP_001020583.1;gbkey=CDS;gene=golS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459349.1;locus_tag=C9E96_RS22545;product=Au(I) sensor transcriptional regulator GolS;protein_id=WP_001020583.1;transl_table=11
NZ_PYJX01000236.1	RefSeq	gene	3053	3247	.	+	.	ID=gene-C9E96_RS22550;Name=golB;gbkey=Gene;gene=golB;gene_biotype=protein_coding;locus_tag=C9E96_RS22550;old_locus_tag=C9E96_23125
NZ_PYJX01000236.1	Protein Homology	CDS	3053	3247	.	+	0	ID=cds-WP_001159470.1;Parent=gene-C9E96_RS22550;Dbxref=GenBank:WP_001159470.1;Name=WP_001159470.1;gbkey=CDS;gene=golB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459350.1;locus_tag=C9E96_RS22550;product=gold resistance metallochaperone GolB;protein_id=WP_001159470.1;transl_table=11
NZ_PYJX01000236.1	RefSeq	gene	3539	4792	.	+	.	ID=gene-C9E96_RS22555;Name=C9E96_RS22555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22555;old_locus_tag=C9E96_23130
NZ_PYJX01000236.1	Protein Homology	CDS	3539	4792	.	+	0	ID=cds-WP_000288502.1;Parent=gene-C9E96_RS22555;Dbxref=GenBank:WP_000288502.1;Name=WP_000288502.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459351.1;locus_tag=C9E96_RS22555;product=MFS transporter;protein_id=WP_000288502.1;transl_table=11
NZ_PYJX01000236.1	RefSeq	gene	4981	6939	.	+	.	ID=gene-C9E96_RS22560;Name=C9E96_RS22560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22560;old_locus_tag=C9E96_23135
NZ_PYJX01000236.1	Protein Homology	CDS	4981	6939	.	+	0	ID=cds-WP_023993793.1;Parent=gene-C9E96_RS22560;Dbxref=GenBank:WP_023993793.1;Name=WP_023993793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459352.1;locus_tag=C9E96_RS22560;product=site-specific DNA-methyltransferase;protein_id=WP_023993793.1;transl_table=11
NZ_PYJX01000236.1	RefSeq	gene	6949	9921	.	+	.	ID=gene-C9E96_RS22565;Name=C9E96_RS22565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22565;old_locus_tag=C9E96_23140
NZ_PYJX01000236.1	Protein Homology	CDS	6949	9921	.	+	0	ID=cds-WP_023994373.1;Parent=gene-C9E96_RS22565;Dbxref=GenBank:WP_023994373.1;Name=WP_023994373.1;Ontology_term=GO:0003677,GO:0016788;gbkey=CDS;go_function=DNA binding|0003677||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459353.3;locus_tag=C9E96_RS22565;product=type III restriction-modification system endonuclease;protein_id=WP_023994373.1;transl_table=11
NZ_PYJX01000236.1	RefSeq	gene	10198	10299	.	+	.	ID=gene-C9E96_RS22570;Name=ssaA;gbkey=Gene;gene=ssaA;gene_biotype=protein_coding;locus_tag=C9E96_RS22570;old_locus_tag=C9E96_23145
NZ_PYJX01000236.1	Protein Homology	CDS	10198	10299	.	+	0	ID=cds-WP_000934834.1;Parent=gene-C9E96_RS22570;Dbxref=GenBank:WP_000934834.1;Name=WP_000934834.1;gbkey=CDS;gene=ssaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459354.1;locus_tag=C9E96_RS22570;product=small effector SsaA;protein_id=WP_000934834.1;transl_table=11
NZ_PYJX01000236.1	RefSeq	gene	10416	11819	.	+	.	ID=gene-C9E96_RS22575;Name=C9E96_RS22575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22575;old_locus_tag=C9E96_23150
NZ_PYJX01000236.1	Protein Homology	CDS	10416	11819	.	+	0	ID=cds-WP_000393711.1;Parent=gene-C9E96_RS22575;Dbxref=GenBank:WP_000393711.1;Name=WP_000393711.1;Ontology_term=GO:0009055,GO:0046872,GO:0016020,GO:0070069;gbkey=CDS;go_component=membrane|0016020||IEA,cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459355.1;locus_tag=C9E96_RS22575;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_000393711.1;transl_table=11
NZ_PYJX01000236.1	RefSeq	gene	11816	12309	.	+	.	ID=gene-C9E96_RS22580;Name=C9E96_RS22580;end_range=12309,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22580;old_locus_tag=C9E96_23155;partial=true
NZ_PYJX01000236.1	Protein Homology	CDS	11816	12309	.	+	0	ID=cds-WP_135494688.1;Parent=gene-C9E96_RS22580;Dbxref=GenBank:WP_135494688.1;Name=WP_135494688.1;Ontology_term=GO:0006119,GO:0009055,GO:0005886,GO:0070069;end_range=12309,.;gbkey=CDS;go_component=plasma membrane|0005886||IEA,cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA;go_process=oxidative phosphorylation|0006119||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459356.1;locus_tag=C9E96_RS22580;partial=true;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_135494688.1;transl_table=11
##sequence-region NZ_PYJX01000007.1 1 12286
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000007.1	RefSeq	region	1	12286	.	+	.	ID=NZ_PYJX01000007.1:1..12286;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000007.1	RefSeq	gene	1	1034	.	+	.	ID=gene-C9E96_RS00595;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=C9E96_RS00595;old_locus_tag=C9E96_00610;partial=true;start_range=.,1
NZ_PYJX01000007.1	Protein Homology	CDS	1	1034	.	+	2	ID=cds-WP_135493713.1;Parent=gene-C9E96_RS00595;Dbxref=GenBank:WP_135493713.1;Name=WP_135493713.1;Ontology_term=GO:0000105,GO:0004399,GO:0046872,GO:0051287;gbkey=CDS;gene=hisD;go_function=histidinol dehydrogenase activity|0004399||IEA,metal ion binding|0046872||IEA,NAD binding|0051287||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461017.1;locus_tag=C9E96_RS00595;partial=true;product=histidinol dehydrogenase;protein_id=WP_135493713.1;start_range=.,1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	1031	2110	.	+	.	ID=gene-C9E96_RS00600;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=C9E96_RS00600;old_locus_tag=C9E96_00615
NZ_PYJX01000007.1	Protein Homology	CDS	1031	2110	.	+	0	ID=cds-WP_000102715.1;Parent=gene-C9E96_RS00600;Dbxref=GenBank:WP_000102715.1;Name=WP_000102715.1;Ontology_term=GO:0000105,GO:0004400;gbkey=CDS;gene=hisC;go_function=histidinol-phosphate transaminase activity|0004400||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461018.1;locus_tag=C9E96_RS00600;product=histidinol-phosphate transaminase;protein_id=WP_000102715.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	2107	3174	.	+	.	ID=gene-C9E96_RS00605;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=C9E96_RS00605;old_locus_tag=C9E96_00620
NZ_PYJX01000007.1	Protein Homology	CDS	2107	3174	.	+	0	ID=cds-WP_021294063.1;Parent=gene-C9E96_RS00605;Dbxref=GenBank:WP_021294063.1;Name=WP_021294063.1;Ontology_term=GO:0000105,GO:0004401,GO:0004424;gbkey=CDS;gene=hisB;go_function=histidinol-phosphatase activity|0004401||IEA,imidazoleglycerol-phosphate dehydratase activity|0004424||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461019.1;locus_tag=C9E96_RS00605;product=bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;protein_id=WP_021294063.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	3174	3767	.	+	.	ID=gene-C9E96_RS00610;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=C9E96_RS00610;old_locus_tag=C9E96_00625
NZ_PYJX01000007.1	Protein Homology	CDS	3174	3767	.	+	0	ID=cds-WP_135493715.1;Parent=gene-C9E96_RS00610;Dbxref=GenBank:WP_135493715.1;Name=WP_135493715.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisH;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128083.1;locus_tag=C9E96_RS00610;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_135493715.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	3764	4501	.	+	.	ID=gene-C9E96_RS00615;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=C9E96_RS00615;old_locus_tag=C9E96_00630
NZ_PYJX01000007.1	Protein Homology	CDS	3764	4501	.	+	0	ID=cds-WP_000586406.1;Parent=gene-C9E96_RS00615;Dbxref=GenBank:WP_000586406.1;Name=WP_000586406.1;Ontology_term=GO:0000105,GO:0003949;gbkey=CDS;gene=hisA;go_function=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|0003949||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461021.1;locus_tag=C9E96_RS00615;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase;protein_id=WP_000586406.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	4483	5259	.	+	.	ID=gene-C9E96_RS00620;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=C9E96_RS00620;old_locus_tag=C9E96_00635
NZ_PYJX01000007.1	Protein Homology	CDS	4483	5259	.	+	0	ID=cds-WP_000880125.1;Parent=gene-C9E96_RS00620;Dbxref=GenBank:WP_000880125.1;Name=WP_000880125.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisF;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461022.1;locus_tag=C9E96_RS00620;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_000880125.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	5253	5864	.	+	.	ID=gene-C9E96_RS00625;Name=hisIE;gbkey=Gene;gene=hisIE;gene_biotype=protein_coding;locus_tag=C9E96_RS00625;old_locus_tag=C9E96_00640
NZ_PYJX01000007.1	Protein Homology	CDS	5253	5864	.	+	0	ID=cds-WP_000954847.1;Parent=gene-C9E96_RS00625;Dbxref=GenBank:WP_000954847.1;Name=WP_000954847.1;Ontology_term=GO:0000105,GO:0004635,GO:0004636;gbkey=CDS;gene=hisIE;go_function=phosphoribosyl-AMP cyclohydrolase activity|0004635||IEA,phosphoribosyl-ATP diphosphatase activity|0004636||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461023.1;locus_tag=C9E96_RS00625;product=bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE;protein_id=WP_000954847.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	5959	6942	.	-	.	ID=gene-C9E96_RS00630;Name=wzzB;gbkey=Gene;gene=wzzB;gene_biotype=protein_coding;locus_tag=C9E96_RS00630;old_locus_tag=C9E96_00645
NZ_PYJX01000007.1	Protein Homology	CDS	5959	6942	.	-	0	ID=cds-WP_000215250.1;Parent=gene-C9E96_RS00630;Dbxref=GenBank:WP_000215250.1;Name=WP_000215250.1;Ontology_term=GO:0009103;gbkey=CDS;gene=wzzB;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461024.1;locus_tag=C9E96_RS00630;product=LPS O-antigen chain length determinant protein WzzB;protein_id=WP_000215250.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	7085	8251	.	-	.	ID=gene-C9E96_RS00635;Name=ugd;gbkey=Gene;gene=ugd;gene_biotype=protein_coding;locus_tag=C9E96_RS00635;old_locus_tag=C9E96_00650
NZ_PYJX01000007.1	Protein Homology	CDS	7085	8251	.	-	0	ID=cds-WP_080203694.1;Parent=gene-C9E96_RS00635;Dbxref=GenBank:WP_080203694.1;Name=WP_080203694.1;Ontology_term=GO:0000271,GO:0003979;gbkey=CDS;gene=ugd;go_function=UDP-glucose 6-dehydrogenase activity|0003979||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461025.1;locus_tag=C9E96_RS00635;product=UDP-glucose 6-dehydrogenase;protein_id=WP_080203694.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	8488	9894	.	-	.	ID=gene-C9E96_RS00645;Name=gndA;gbkey=Gene;gene=gndA;gene_biotype=protein_coding;locus_tag=C9E96_RS00645;old_locus_tag=C9E96_00660
NZ_PYJX01000007.1	Protein Homology	CDS	8488	9894	.	-	0	ID=cds-WP_000043532.1;Parent=gene-C9E96_RS00645;Dbxref=GenBank:WP_000043532.1;Name=WP_000043532.1;Ontology_term=GO:0006098,GO:0004616,GO:0050661;gbkey=CDS;gene=gndA;go_function=phosphogluconate dehydrogenase (decarboxylating) activity|0004616||IEA,NADP binding|0050661||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461026.1;locus_tag=C9E96_RS00645;product=NADP-dependent phosphogluconate dehydrogenase;protein_id=WP_000043532.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	gene	10031	11557	.	-	.	ID=gene-C9E96_RS00650;Name=C9E96_RS00650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00650;old_locus_tag=C9E96_00665
NZ_PYJX01000007.1	Protein Homology	CDS	10031	11557	.	-	0	ID=cds-WP_001259152.1;Parent=gene-C9E96_RS00650;Dbxref=GenBank:WP_001259152.1;Name=WP_001259152.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001259151.1;locus_tag=C9E96_RS00650;product=hypothetical protein;protein_id=WP_001259152.1;transl_table=11
NZ_PYJX01000007.1	RefSeq	pseudogene	11843	12286	.	-	.	ID=gene-C9E96_RS00655;Name=cpsG;end_range=12286,.;gbkey=Gene;gene=cpsG;gene_biotype=pseudogene;gene_synonym=manB;locus_tag=C9E96_RS00655;old_locus_tag=C9E96_00670;partial=true;pseudo=true
NZ_PYJX01000007.1	Protein Homology	CDS	11843	12286	.	-	0	ID=cds-C9E96_RS00655;Parent=gene-C9E96_RS00655;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=12286,.;gbkey=CDS;gene=cpsG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441794.1;locus_tag=C9E96_RS00655;partial=true;product=colanic acid biosynthesis phosphomannomutase CpsG;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000006.1 1 12101
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000006.1	RefSeq	region	1	12101	.	+	.	ID=NZ_PYJX01000006.1:1..12101;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000006.1	RefSeq	gene	1	660	.	+	.	ID=gene-C9E96_RS00550;Name=rsmJ;gbkey=Gene;gene=rsmJ;gene_biotype=protein_coding;locus_tag=C9E96_RS00550;old_locus_tag=C9E96_00565;partial=true;start_range=.,1
NZ_PYJX01000006.1	Protein Homology	CDS	1	660	.	+	0	ID=cds-WP_135493707.1;Parent=gene-C9E96_RS00550;Dbxref=GenBank:WP_135493707.1;Name=WP_135493707.1;Ontology_term=GO:0031167,GO:0008990;gbkey=CDS;gene=rsmJ;go_function=rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462494.1;locus_tag=C9E96_RS00550;partial=true;product=16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ;protein_id=WP_135493707.1;start_range=.,1;transl_table=11
NZ_PYJX01000006.1	RefSeq	gene	752	2224	.	-	.	ID=gene-C9E96_RS00555;Name=dtpB;gbkey=Gene;gene=dtpB;gene_biotype=protein_coding;locus_tag=C9E96_RS00555;old_locus_tag=C9E96_00570
NZ_PYJX01000006.1	Protein Homology	CDS	752	2224	.	-	0	ID=cds-WP_001098274.1;Parent=gene-C9E96_RS00555;Dbxref=GenBank:WP_001098274.1;Name=WP_001098274.1;gbkey=CDS;gene=dtpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462493.1;locus_tag=C9E96_RS00555;product=dipeptide/tripeptide permease DtpB;protein_id=WP_001098274.1;transl_table=11
NZ_PYJX01000006.1	RefSeq	gene	2549	2983	.	-	.	ID=gene-C9E96_RS00560;Name=uspA;gbkey=Gene;gene=uspA;gene_biotype=protein_coding;locus_tag=C9E96_RS00560;old_locus_tag=C9E96_00575
NZ_PYJX01000006.1	Protein Homology	CDS	2549	2983	.	-	0	ID=cds-WP_000323565.1;Parent=gene-C9E96_RS00560;Dbxref=GenBank:WP_000323565.1;Name=WP_000323565.1;gbkey=CDS;gene=uspA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462492.1;locus_tag=C9E96_RS00560;product=universal stress protein UspA;protein_id=WP_000323565.1;transl_table=11
NZ_PYJX01000006.1	RefSeq	gene	3371	3706	.	+	.	ID=gene-C9E96_RS00565;Name=uspB;gbkey=Gene;gene=uspB;gene_biotype=protein_coding;locus_tag=C9E96_RS00565;old_locus_tag=C9E96_00580
NZ_PYJX01000006.1	Protein Homology	CDS	3371	3706	.	+	0	ID=cds-WP_000626193.1;Parent=gene-C9E96_RS00565;Dbxref=GenBank:WP_000626193.1;Name=WP_000626193.1;gbkey=CDS;gene=uspB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462491.1;locus_tag=C9E96_RS00565;product=universal stress protein UspB;protein_id=WP_000626193.1;transl_table=11
NZ_PYJX01000006.1	RefSeq	gene	3846	5342	.	-	.	ID=gene-C9E96_RS00570;Name=pitA;gbkey=Gene;gene=pitA;gene_biotype=protein_coding;locus_tag=C9E96_RS00570;old_locus_tag=C9E96_00585
NZ_PYJX01000006.1	Protein Homology	CDS	3846	5342	.	-	0	ID=cds-WP_000902764.1;Parent=gene-C9E96_RS00570;Dbxref=GenBank:WP_000902764.1;Name=WP_000902764.1;Ontology_term=GO:0006817,GO:0016020;gbkey=CDS;gene=pitA;go_component=membrane|0016020||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462490.1;locus_tag=C9E96_RS00570;product=inorganic phosphate transporter PitA;protein_id=WP_000902764.1;transl_table=11
NZ_PYJX01000006.1	RefSeq	gene	5573	6769	.	+	.	ID=gene-C9E96_RS00575;Name=C9E96_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00575;old_locus_tag=C9E96_00590
NZ_PYJX01000006.1	Protein Homology	CDS	5573	6769	.	+	0	ID=cds-WP_135493709.1;Parent=gene-C9E96_RS00575;Dbxref=GenBank:WP_135493709.1;Name=WP_135493709.1;Ontology_term=GO:0050660,GO:0050661;gbkey=CDS;go_function=flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462489.1;locus_tag=C9E96_RS00575;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_135493709.1;transl_table=11
NZ_PYJX01000006.1	RefSeq	gene	7075	8142	.	+	.	ID=gene-C9E96_RS00580;Name=C9E96_RS00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00580;old_locus_tag=C9E96_00595
NZ_PYJX01000006.1	Protein Homology	CDS	7075	8142	.	+	0	ID=cds-WP_000359836.1;Parent=gene-C9E96_RS00580;Dbxref=GenBank:WP_000359836.1;Name=WP_000359836.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462488.1;locus_tag=C9E96_RS00580;product=HlyD family secretion protein;protein_id=WP_000359836.1;transl_table=11
NZ_PYJX01000006.1	RefSeq	gene	8139	10880	.	+	.	ID=gene-C9E96_RS00585;Name=rbbA;gbkey=Gene;gene=rbbA;gene_biotype=protein_coding;locus_tag=C9E96_RS00585;old_locus_tag=C9E96_00600
NZ_PYJX01000006.1	Protein Homology	CDS	8139	10880	.	+	0	ID=cds-WP_135493711.1;Parent=gene-C9E96_RS00585;Dbxref=GenBank:WP_135493711.1;Name=WP_135493711.1;Ontology_term=GO:0055085,GO:0005524,GO:0042626,GO:0016020,GO:0043190;gbkey=CDS;gene=rbbA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709254.1;locus_tag=C9E96_RS00585;product=ribosome-associated ATPase/putative transporter RbbA;protein_id=WP_135493711.1;transl_table=11
NZ_PYJX01000006.1	RefSeq	gene	10880	12004	.	+	.	ID=gene-C9E96_RS00590;Name=C9E96_RS00590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00590;old_locus_tag=C9E96_00605
NZ_PYJX01000006.1	Protein Homology	CDS	10880	12004	.	+	0	ID=cds-WP_001214757.1;Parent=gene-C9E96_RS00590;Dbxref=GenBank:WP_001214757.1;Name=WP_001214757.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462486.1;locus_tag=C9E96_RS00590;product=ABC transporter permease;protein_id=WP_001214757.1;transl_table=11
##sequence-region NZ_PYJX01000110.1 1 11796
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000110.1	RefSeq	region	1	11796	.	+	.	ID=NZ_PYJX01000110.1:1..11796;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000110.1	RefSeq	gene	1	1803	.	+	.	ID=gene-C9E96_RS09310;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=C9E96_RS09310;old_locus_tag=C9E96_09515;partial=true;start_range=.,1
NZ_PYJX01000110.1	Protein Homology	CDS	1	1803	.	+	0	ID=cds-WP_135494134.1;Parent=gene-C9E96_RS09310;Dbxref=GenBank:WP_135494134.1;Name=WP_135494134.1;Ontology_term=GO:0006261,GO:0003676,GO:0003677,GO:0003887,GO:0008408;gbkey=CDS;gene=polA;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA-templated DNA replication|0006261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462879.1;locus_tag=C9E96_RS09310;partial=true;product=DNA polymerase I;protein_id=WP_135494134.1;start_range=.,1;transl_table=11
NZ_PYJX01000110.1	RefSeq	gene	2138	2770	.	-	.	ID=gene-C9E96_RS09320;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=C9E96_RS09320;old_locus_tag=C9E96_09525
NZ_PYJX01000110.1	Protein Homology	CDS	2138	2770	.	-	0	ID=cds-WP_000183327.1;Parent=gene-C9E96_RS09320;Dbxref=GenBank:WP_000183327.1;Name=WP_000183327.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462881.1;locus_tag=C9E96_RS09320;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=WP_000183327.1;transl_table=11
NZ_PYJX01000110.1	RefSeq	gene	3010	3234	.	+	.	ID=gene-C9E96_RS09325;Name=C9E96_RS09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09325;old_locus_tag=C9E96_09530
NZ_PYJX01000110.1	Protein Homology	CDS	3010	3234	.	+	0	ID=cds-WP_001541209.1;Parent=gene-C9E96_RS09325;Dbxref=GenBank:WP_001541209.1;Name=WP_001541209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462882.1;locus_tag=C9E96_RS09325;product=hypothetical protein;protein_id=WP_001541209.1;transl_table=11
NZ_PYJX01000110.1	RefSeq	gene	3353	3868	.	+	.	ID=gene-C9E96_RS09330;Name=yihI;gbkey=Gene;gene=yihI;gene_biotype=protein_coding;locus_tag=C9E96_RS09330;old_locus_tag=C9E96_09535
NZ_PYJX01000110.1	Protein Homology	CDS	3353	3868	.	+	0	ID=cds-WP_000743296.1;Parent=gene-C9E96_RS09330;Dbxref=GenBank:WP_000743296.1;Name=WP_000743296.1;gbkey=CDS;gene=yihI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462883.1;locus_tag=C9E96_RS09330;product=Der GTPase-activating protein YihI;protein_id=WP_000743296.1;transl_table=11
NZ_PYJX01000110.1	RefSeq	gene	4057	5430	.	+	.	ID=gene-C9E96_RS09335;Name=hemN;gbkey=Gene;gene=hemN;gene_biotype=protein_coding;locus_tag=C9E96_RS09335;old_locus_tag=C9E96_09540
NZ_PYJX01000110.1	Protein Homology	CDS	4057	5430	.	+	0	ID=cds-WP_000003528.1;Parent=gene-C9E96_RS09335;Dbxref=GenBank:WP_000003528.1;Name=WP_000003528.1;Ontology_term=GO:0006779,GO:0004109,GO:0005737;gbkey=CDS;gene=hemN;go_component=cytoplasm|0005737||IEA;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462884.1;locus_tag=C9E96_RS09335;product=oxygen-independent coproporphyrinogen III oxidase;protein_id=WP_000003528.1;transl_table=11
NZ_PYJX01000110.1	RefSeq	gene	5520	5630	.	-	.	ID=gene-C9E96_RS09340;Name=C9E96_RS09340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09340;old_locus_tag=C9E96_09545
NZ_PYJX01000110.1	Protein Homology	CDS	5520	5630	.	-	0	ID=cds-WP_001578131.1;Parent=gene-C9E96_RS09340;Dbxref=GenBank:WP_001578131.1;Name=WP_001578131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791260.1;locus_tag=C9E96_RS09340;product=YshB family small membrane protein;protein_id=WP_001578131.1;transl_table=11
NZ_PYJX01000110.1	RefSeq	gene	5743	7152	.	-	.	ID=gene-C9E96_RS09345;Name=glnG;gbkey=Gene;gene=glnG;gene_biotype=protein_coding;locus_tag=C9E96_RS09345;old_locus_tag=C9E96_09550
NZ_PYJX01000110.1	Protein Homology	CDS	5743	7152	.	-	0	ID=cds-WP_135494136.1;Parent=gene-C9E96_RS09345;Dbxref=GenBank:WP_135494136.1;Name=WP_135494136.1;Ontology_term=GO:0006355,GO:0043565;gbkey=CDS;gene=glnG;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133942.1;locus_tag=C9E96_RS09345;product=nitrogen regulation protein NR(I);protein_id=WP_135494136.1;transl_table=11
NZ_PYJX01000110.1	RefSeq	gene	7161	8210	.	-	.	ID=gene-C9E96_RS09350;Name=glnL;gbkey=Gene;gene=glnL;gene_biotype=protein_coding;locus_tag=C9E96_RS09350;old_locus_tag=C9E96_09555
NZ_PYJX01000110.1	Protein Homology	CDS	7161	8210	.	-	0	ID=cds-WP_135494138.1;Parent=gene-C9E96_RS09350;Dbxref=GenBank:WP_135494138.1;Name=WP_135494138.1;Ontology_term=GO:0006355,GO:0007165,GO:0016310,GO:0000155;gbkey=CDS;gene=glnL;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462886.1;locus_tag=C9E96_RS09350;product=nitrogen regulation protein NR(II);protein_id=WP_135494138.1;transl_table=11
NZ_PYJX01000110.1	RefSeq	gene	8485	9894	.	-	.	ID=gene-C9E96_RS09360;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=C9E96_RS09360;old_locus_tag=C9E96_09565
NZ_PYJX01000110.1	Protein Homology	CDS	8485	9894	.	-	0	ID=cds-WP_167852886.1;Parent=gene-C9E96_RS09360;Dbxref=GenBank:WP_167852886.1;Name=WP_167852886.1;Ontology_term=GO:0006542,GO:0008152,GO:0004356;gbkey=CDS;gene=glnA;go_function=glutamine synthetase activity|0004356||IEA;go_process=glutamine biosynthetic process|0006542||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233234.1;locus_tag=C9E96_RS09360;product=glutamate--ammonia ligase;protein_id=WP_167852886.1;transl_table=11
NZ_PYJX01000110.1	RefSeq	pseudogene	10270	11772	.	+	.	ID=gene-C9E96_RS09365;Name=typA;end_range=11772,.;gbkey=Gene;gene=typA;gene_biotype=pseudogene;locus_tag=C9E96_RS09365;old_locus_tag=C9E96_09575;partial=true;pseudo=true
NZ_PYJX01000110.1	Protein Homology	CDS	10270	11772	.	+	0	ID=cds-C9E96_RS09365;Parent=gene-C9E96_RS09365;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006412,GO:0006950,GO:0003924,GO:0005525;end_range=11772,.;gbkey=CDS;gene=typA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translation|0006412||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462889.1;locus_tag=C9E96_RS09365;partial=true;product=translational GTPase TypA;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000195.1 1 11709
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000195.1	RefSeq	region	1	11709	.	+	.	ID=NZ_PYJX01000195.1:1..11709;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000195.1	RefSeq	gene	525	1139	.	+	.	ID=gene-C9E96_RS19525;Name=C9E96_RS19525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19525;old_locus_tag=C9E96_20040
NZ_PYJX01000195.1	Protein Homology	CDS	525	1139	.	+	0	ID=cds-WP_023994535.1;Parent=gene-C9E96_RS19525;Dbxref=GenBank:WP_023994535.1;Name=WP_023994535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000049617.1;locus_tag=C9E96_RS19525;product=DUF4376 domain-containing protein;protein_id=WP_023994535.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	1136	1591	.	+	.	ID=gene-C9E96_RS19530;Name=C9E96_RS19530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19530;old_locus_tag=C9E96_20045
NZ_PYJX01000195.1	Protein Homology	CDS	1136	1591	.	+	0	ID=cds-WP_023203255.1;Parent=gene-C9E96_RS19530;Dbxref=GenBank:WP_023203255.1;Name=WP_023203255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463063.1;locus_tag=C9E96_RS19530;product=hypothetical protein;protein_id=WP_023203255.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	pseudogene	1867	2131	.	+	.	ID=gene-C9E96_RS19535;Name=C9E96_RS19535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS19535;old_locus_tag=C9E96_20050;pseudo=true
NZ_PYJX01000195.1	Protein Homology	CDS	1867	2131	.	+	0	ID=cds-C9E96_RS19535;Parent=gene-C9E96_RS19535;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001738630.1;locus_tag=C9E96_RS19535;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	2328	3056	.	+	.	ID=gene-C9E96_RS19540;Name=C9E96_RS19540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19540;old_locus_tag=C9E96_20055
NZ_PYJX01000195.1	Protein Homology	CDS	2328	3056	.	+	0	ID=cds-WP_000587744.1;Parent=gene-C9E96_RS19540;Dbxref=GenBank:WP_000587744.1;Name=WP_000587744.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463061.1;locus_tag=C9E96_RS19540;product=hypothetical protein;protein_id=WP_000587744.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	3318	4259	.	+	.	ID=gene-C9E96_RS19545;Name=panS;gbkey=Gene;gene=panS;gene_biotype=protein_coding;locus_tag=C9E96_RS19545;old_locus_tag=C9E96_20060
NZ_PYJX01000195.1	Protein Homology	CDS	3318	4259	.	+	0	ID=cds-WP_000881647.1;Parent=gene-C9E96_RS19545;Dbxref=GenBank:WP_000881647.1;Name=WP_000881647.1;gbkey=CDS;gene=panS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463060.1;locus_tag=C9E96_RS19545;product=ketopantoate/pantoate/pantothenate transporter PanS;protein_id=WP_000881647.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	4357	4629	.	+	.	ID=gene-C9E96_RS19550;Name=C9E96_RS19550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19550;old_locus_tag=C9E96_20065
NZ_PYJX01000195.1	Protein Homology	CDS	4357	4629	.	+	0	ID=cds-WP_001207628.1;Parent=gene-C9E96_RS19550;Dbxref=GenBank:WP_001207628.1;Name=WP_001207628.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463059.1;locus_tag=C9E96_RS19550;product=DUF3811 domain-containing protein;protein_id=WP_001207628.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	4626	5495	.	-	.	ID=gene-C9E96_RS19555;Name=rluF;gbkey=Gene;gene=rluF;gene_biotype=protein_coding;locus_tag=C9E96_RS19555;old_locus_tag=C9E96_20070
NZ_PYJX01000195.1	Protein Homology	CDS	4626	5495	.	-	0	ID=cds-WP_000954618.1;Parent=gene-C9E96_RS19555;Dbxref=GenBank:WP_000954618.1;Name=WP_000954618.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluF;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463058.1;locus_tag=C9E96_RS19555;product=23S rRNA pseudouridine(2604) synthase RluF;protein_id=WP_000954618.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	5542	6081	.	-	.	ID=gene-C9E96_RS19560;Name=C9E96_RS19560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19560;old_locus_tag=C9E96_20075
NZ_PYJX01000195.1	Protein Homology	CDS	5542	6081	.	-	0	ID=cds-WP_001096724.1;Parent=gene-C9E96_RS19560;Dbxref=GenBank:WP_001096724.1;Name=WP_001096724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463057.1;locus_tag=C9E96_RS19560;product=DUF2058 domain-containing protein;protein_id=WP_001096724.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	6116	6217	.	-	.	ID=gene-C9E96_RS19565;Name=C9E96_RS19565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19565;old_locus_tag=C9E96_20080
NZ_PYJX01000195.1	Protein Homology	CDS	6116	6217	.	-	0	ID=cds-WP_031606603.1;Parent=gene-C9E96_RS19565;Dbxref=GenBank:WP_031606603.1;Name=WP_031606603.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463056.1;locus_tag=C9E96_RS19565;product=hypothetical protein;protein_id=WP_031606603.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	6289	6978	.	+	.	ID=gene-C9E96_RS19570;Name=pepE;gbkey=Gene;gene=pepE;gene_biotype=protein_coding;locus_tag=C9E96_RS19570;old_locus_tag=C9E96_20085
NZ_PYJX01000195.1	Protein Homology	CDS	6289	6978	.	+	0	ID=cds-WP_000421776.1;Parent=gene-C9E96_RS19570;Dbxref=GenBank:WP_000421776.1;Name=WP_000421776.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;gene=pepE;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463055.1;locus_tag=C9E96_RS19570;product=dipeptidase PepE;protein_id=WP_000421776.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	7054	8685	.	-	.	ID=gene-C9E96_RS19575;Name=C9E96_RS19575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19575;old_locus_tag=C9E96_20090
NZ_PYJX01000195.1	Protein Homology	CDS	7054	8685	.	-	0	ID=cds-WP_000956811.1;Parent=gene-C9E96_RS19575;Dbxref=GenBank:WP_000956811.1;Name=WP_000956811.1;Ontology_term=GO:0044341,GO:0005436,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=sodium:phosphate symporter activity|0005436||IEA;go_process=sodium-dependent phosphate transport|0044341||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463054.1;locus_tag=C9E96_RS19575;product=Na/Pi cotransporter family protein;protein_id=WP_000956811.1;transl_table=11
NZ_PYJX01000195.1	RefSeq	gene	8952	11709	.	-	.	ID=gene-C9E96_RS19580;Name=metH;end_range=11709,.;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=C9E96_RS19580;old_locus_tag=C9E96_20095;partial=true
NZ_PYJX01000195.1	Protein Homology	CDS	8952	11709	.	-	1	ID=cds-WP_135494506.1;Parent=gene-C9E96_RS19580;Dbxref=GenBank:WP_135494506.1;Name=WP_135494506.1;Ontology_term=GO:0009086,GO:0008270,GO:0008705,GO:0031419;end_range=11709,.;gbkey=CDS;gene=metH;go_function=zinc ion binding|0008270||IEA,methionine synthase activity|0008705||IEA,cobalamin binding|0031419||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312964.1;locus_tag=C9E96_RS19580;partial=true;product=methionine synthase;protein_id=WP_135494506.1;transl_table=11
##sequence-region NZ_PYJX01000182.1 1 11492
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000182.1	RefSeq	region	1	11492	.	+	.	ID=NZ_PYJX01000182.1:1..11492;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000182.1	RefSeq	pseudogene	75	1112	.	+	.	ID=gene-C9E96_RS17200;Name=C9E96_RS17200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS17200;old_locus_tag=C9E96_17650;partial=true;pseudo=true;start_range=.,75
NZ_PYJX01000182.1	Protein Homology	CDS	75	1112	.	+	0	ID=cds-C9E96_RS17200;Parent=gene-C9E96_RS17200;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462649.1;locus_tag=C9E96_RS17200;partial=true;product=TIM-barrel domain-containing protein;pseudo=true;start_range=.,75;transl_table=11
NZ_PYJX01000182.1	RefSeq	gene	1215	2924	.	-	.	ID=gene-C9E96_RS17205;Name=C9E96_RS17205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17205;old_locus_tag=C9E96_17655
NZ_PYJX01000182.1	Protein Homology	CDS	1215	2924	.	-	0	ID=cds-WP_135494439.1;Parent=gene-C9E96_RS17205;Dbxref=GenBank:WP_135494439.1;Name=WP_135494439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462648.1;locus_tag=C9E96_RS17205;product=AsmA family protein;protein_id=WP_135494439.1;transl_table=11
NZ_PYJX01000182.1	RefSeq	gene	3045	4436	.	-	.	ID=gene-C9E96_RS17210;Name=xanP;gbkey=Gene;gene=xanP;gene_biotype=protein_coding;locus_tag=C9E96_RS17210;old_locus_tag=C9E96_17660
NZ_PYJX01000182.1	Protein Homology	CDS	3045	4436	.	-	0	ID=cds-WP_135494441.1;Parent=gene-C9E96_RS17210;Dbxref=GenBank:WP_135494441.1;Name=WP_135494441.1;gbkey=CDS;gene=xanP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462647.1;locus_tag=C9E96_RS17210;product=xanthine/proton symporter XanP;protein_id=WP_135494441.1;transl_table=11
NZ_PYJX01000182.1	RefSeq	gene	4664	5869	.	+	.	ID=gene-C9E96_RS17220;Name=gltS;gbkey=Gene;gene=gltS;gene_biotype=protein_coding;locus_tag=C9E96_RS17220;old_locus_tag=C9E96_17665
NZ_PYJX01000182.1	Protein Homology	CDS	4664	5869	.	+	0	ID=cds-WP_000462250.1;Parent=gene-C9E96_RS17220;Dbxref=GenBank:WP_000462250.1;Name=WP_000462250.1;Ontology_term=GO:0015813,GO:0015501,GO:0016020;gbkey=CDS;gene=gltS;go_component=membrane|0016020||IEA;go_function=glutamate:sodium symporter activity|0015501||IEA;go_process=L-glutamate transmembrane transport|0015813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016507315.1;locus_tag=C9E96_RS17220;product=sodium/glutamate symporter;protein_id=WP_000462250.1;transl_table=11
NZ_PYJX01000182.1	RefSeq	gene	5905	7986	.	-	.	ID=gene-C9E96_RS17225;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=C9E96_RS17225;old_locus_tag=C9E96_17670
NZ_PYJX01000182.1	Protein Homology	CDS	5905	7986	.	-	0	ID=cds-WP_000016747.1;Parent=gene-C9E96_RS17225;Dbxref=GenBank:WP_000016747.1;Name=WP_000016747.1;Ontology_term=GO:0006281,GO:0006310,GO:0003676,GO:0003678,GO:0005524;gbkey=CDS;gene=recG;go_function=nucleic acid binding|0003676||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462644.1;locus_tag=C9E96_RS17225;product=ATP-dependent DNA helicase RecG;protein_id=WP_000016747.1;transl_table=11
NZ_PYJX01000182.1	RefSeq	gene	7992	8681	.	-	.	ID=gene-C9E96_RS17230;Name=trmH;gbkey=Gene;gene=trmH;gene_biotype=protein_coding;locus_tag=C9E96_RS17230;old_locus_tag=C9E96_17675
NZ_PYJX01000182.1	Protein Homology	CDS	7992	8681	.	-	0	ID=cds-WP_001068436.1;Parent=gene-C9E96_RS17230;Dbxref=GenBank:WP_001068436.1;Name=WP_001068436.1;Ontology_term=GO:0030488,GO:0141100;gbkey=CDS;gene=trmH;go_function=tRNA (guanine(18)-2'-O)-methyltransferase activity|0141100||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462643.1;locus_tag=C9E96_RS17230;product=tRNA (guanosine(18)-2'-O)-methyltransferase TrmH;protein_id=WP_001068436.1;transl_table=11
NZ_PYJX01000182.1	RefSeq	gene	8686	10797	.	-	.	ID=gene-C9E96_RS17235;Name=spoT;gbkey=Gene;gene=spoT;gene_biotype=protein_coding;locus_tag=C9E96_RS17235;old_locus_tag=C9E96_17680
NZ_PYJX01000182.1	Protein Homology	CDS	8686	10797	.	-	0	ID=cds-WP_000280481.1;Parent=gene-C9E96_RS17235;Dbxref=GenBank:WP_000280481.1;Name=WP_000280481.1;Ontology_term=GO:0015969,GO:0008728,GO:0008893;gbkey=CDS;gene=spoT;go_function=GTP diphosphokinase activity|0008728||IEA,guanosine-3'%2C5'-bis(diphosphate) 3'-diphosphatase activity|0008893||IEA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462642.1;locus_tag=C9E96_RS17235;product=bifunctional GTP diphosphokinase/guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase;protein_id=WP_000280481.1;transl_table=11
NZ_PYJX01000182.1	RefSeq	gene	10816	11091	.	-	.	ID=gene-C9E96_RS17240;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=C9E96_RS17240;old_locus_tag=C9E96_17685
NZ_PYJX01000182.1	Protein Homology	CDS	10816	11091	.	-	0	ID=cds-WP_000135058.1;Parent=gene-C9E96_RS17240;Dbxref=GenBank:WP_000135058.1;Name=WP_000135058.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;gene=rpoZ;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013511051.1;locus_tag=C9E96_RS17240;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_000135058.1;transl_table=11
NZ_PYJX01000182.1	RefSeq	pseudogene	11146	11492	.	-	.	ID=gene-C9E96_RS17245;Name=gmk;end_range=11492,.;gbkey=Gene;gene=gmk;gene_biotype=pseudogene;locus_tag=C9E96_RS17245;old_locus_tag=C9E96_17690;partial=true;pseudo=true
NZ_PYJX01000182.1	Protein Homology	CDS	11146	11492	.	-	2	ID=cds-C9E96_RS17245;Parent=gene-C9E96_RS17245;Note=Essential for recycling GMP and indirectly%2C cGMP%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=11492,.;gbkey=CDS;gene=gmk;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000046969.1;locus_tag=C9E96_RS17245;partial=true;product=guanylate kinase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000161.1 1 11462
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000161.1	RefSeq	region	1	11462	.	+	.	ID=NZ_PYJX01000161.1:1..11462;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000161.1	RefSeq	pseudogene	22	543	.	-	.	ID=gene-C9E96_RS14695;Name=acpT;gbkey=Gene;gene=acpT;gene_biotype=pseudogene;locus_tag=C9E96_RS14695;old_locus_tag=C9E96_15070;pseudo=true
NZ_PYJX01000161.1	Protein Homology	CDS	22	543	.	-	0	ID=cds-C9E96_RS14695;Parent=gene-C9E96_RS14695;Note=internal stop;gbkey=CDS;gene=acpT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462484.1;locus_tag=C9E96_RS14695;product=4'-phosphopantetheinyl transferase AcpT;pseudo=true;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	595	1644	.	-	.	ID=gene-C9E96_RS14700;Name=C9E96_RS14700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14700;old_locus_tag=C9E96_15075
NZ_PYJX01000161.1	Protein Homology	CDS	595	1644	.	-	0	ID=cds-WP_000179588.1;Parent=gene-C9E96_RS14700;Dbxref=GenBank:WP_000179588.1;Name=WP_000179588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462483.1;locus_tag=C9E96_RS14700;product=AI-2E family transporter;protein_id=WP_000179588.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	pseudogene	1734	2993	.	+	.	ID=gene-C9E96_RS14705;Name=C9E96_RS14705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS14705;old_locus_tag=C9E96_15080;pseudo=true
NZ_PYJX01000161.1	Protein Homology	CDS	1734	2993	.	+	0	ID=cds-C9E96_RS14705;Parent=gene-C9E96_RS14705;Note=internal stop;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462482.3;locus_tag=C9E96_RS14705;product=MFS transporter;pseudo=true;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	2997	3554	.	-	.	ID=gene-C9E96_RS14710;Name=C9E96_RS14710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14710;old_locus_tag=C9E96_15085
NZ_PYJX01000161.1	Protein Homology	CDS	2997	3554	.	-	0	ID=cds-WP_135494342.1;Parent=gene-C9E96_RS14710;Dbxref=GenBank:WP_135494342.1;Name=WP_135494342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462481.1;locus_tag=C9E96_RS14710;product=DcrB family lipoprotein;protein_id=WP_135494342.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	3627	4292	.	-	.	ID=gene-C9E96_RS14715;Name=C9E96_RS14715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14715;old_locus_tag=C9E96_15090
NZ_PYJX01000161.1	Protein Homology	CDS	3627	4292	.	-	0	ID=cds-WP_001533906.1;Parent=gene-C9E96_RS14715;Dbxref=GenBank:WP_001533906.1;Name=WP_001533906.1;Ontology_term=GO:1990397;gbkey=CDS;go_process=queuosine salvage|1990397||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462480.1;locus_tag=C9E96_RS14715;product=7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter;protein_id=WP_001533906.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	4462	4707	.	+	.	ID=gene-C9E96_RS14720;Name=tusA;gbkey=Gene;gene=tusA;gene_biotype=protein_coding;locus_tag=C9E96_RS14720;old_locus_tag=C9E96_15095
NZ_PYJX01000161.1	Protein Homology	CDS	4462	4707	.	+	0	ID=cds-WP_001541054.1;Parent=gene-C9E96_RS14720;Dbxref=GenBank:WP_001541054.1;Name=WP_001541054.1;Ontology_term=GO:0002143,GO:0097163;gbkey=CDS;gene=tusA;go_function=sulfur carrier activity|0097163||IEA;go_process=tRNA wobble position uridine thiolation|0002143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462479.1;locus_tag=C9E96_RS14720;product=sulfurtransferase TusA;protein_id=WP_001541054.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	4731	6374	.	-	.	ID=gene-C9E96_RS14725;Name=tcp;gbkey=Gene;gene=tcp;gene_biotype=protein_coding;locus_tag=C9E96_RS14725;old_locus_tag=C9E96_15100
NZ_PYJX01000161.1	Protein Homology	CDS	4731	6374	.	-	0	ID=cds-WP_135494343.1;Parent=gene-C9E96_RS14725;Dbxref=GenBank:WP_135494343.1;Name=WP_135494343.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888;gbkey=CDS;gene=tcp;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462478.1;locus_tag=C9E96_RS14725;product=methyl-accepting chemotaxis citrate transducer;protein_id=WP_135494343.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	6574	8772	.	-	.	ID=gene-C9E96_RS14730;Name=zntA;gbkey=Gene;gene=zntA;gene_biotype=protein_coding;locus_tag=C9E96_RS14730;old_locus_tag=C9E96_15105
NZ_PYJX01000161.1	Protein Homology	CDS	6574	8772	.	-	0	ID=cds-WP_080203893.1;Parent=gene-C9E96_RS14730;Dbxref=GenBank:WP_080203893.1;Name=WP_080203893.1;Ontology_term=GO:0006812,GO:0005215,GO:0005524,GO:0016887,GO:0019829,GO:0046872,GO:0016020;gbkey=CDS;gene=zntA;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA,metal ion binding|0046872||IEA;go_process=monoatomic cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462477.1;locus_tag=C9E96_RS14730;product=Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA;protein_id=WP_080203893.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	8853	9479	.	-	.	ID=gene-C9E96_RS14735;Name=C9E96_RS14735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14735;old_locus_tag=C9E96_15110
NZ_PYJX01000161.1	Protein Homology	CDS	8853	9479	.	-	0	ID=cds-WP_000964735.1;Parent=gene-C9E96_RS14735;Dbxref=GenBank:WP_000964735.1;Name=WP_000964735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462476.1;locus_tag=C9E96_RS14735;product=lysoplasmalogenase;protein_id=WP_000964735.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	9621	9992	.	+	.	ID=gene-C9E96_RS14740;Name=C9E96_RS14740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14740;old_locus_tag=C9E96_15115
NZ_PYJX01000161.1	Protein Homology	CDS	9621	9992	.	+	0	ID=cds-WP_000042855.1;Parent=gene-C9E96_RS14740;Dbxref=GenBank:WP_000042855.1;Name=WP_000042855.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462475.1;locus_tag=C9E96_RS14740;product=DUF2500 domain-containing protein;protein_id=WP_000042855.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	10014	10283	.	-	.	ID=gene-C9E96_RS14745;Name=C9E96_RS14745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14745;old_locus_tag=C9E96_15120
NZ_PYJX01000161.1	Protein Homology	CDS	10014	10283	.	-	0	ID=cds-WP_023227422.1;Parent=gene-C9E96_RS14745;Dbxref=GenBank:WP_023227422.1;Name=WP_023227422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312342.1;locus_tag=C9E96_RS14745;product=DUF1145 family protein;protein_id=WP_023227422.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	gene	10273	10869	.	-	.	ID=gene-C9E96_RS14750;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=C9E96_RS14750;old_locus_tag=C9E96_15125
NZ_PYJX01000161.1	Protein Homology	CDS	10273	10869	.	-	0	ID=cds-WP_135494345.1;Parent=gene-C9E96_RS14750;Dbxref=GenBank:WP_135494345.1;Name=WP_135494345.1;Ontology_term=GO:0031167,GO:0003676,GO:0008168;gbkey=CDS;gene=rsmD;go_function=nucleic acid binding|0003676||IEA,methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462473.1;locus_tag=C9E96_RS14750;product=16S rRNA (guanine(966)-N(2))-methyltransferase;protein_id=WP_135494345.1;transl_table=11
NZ_PYJX01000161.1	RefSeq	pseudogene	10995	11462	.	+	.	ID=gene-C9E96_RS14755;Name=C9E96_RS14755;end_range=11462,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS14755;old_locus_tag=C9E96_15130;partial=true;pseudo=true
NZ_PYJX01000161.1	Protein Homology	CDS	10995	11462	.	+	0	ID=cds-C9E96_RS14755;Parent=gene-C9E96_RS14755;Note=cell division protein%3B signal recognition protein receptor%3B functions in the targeting and insertion of membrane proteins%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=11462,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462472.1;locus_tag=C9E96_RS14755;partial=true;product=signal recognition particle-docking protein FtsY;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000116.1 1 11350
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000116.1	RefSeq	region	1	11350	.	+	.	ID=NZ_PYJX01000116.1:1..11350;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000116.1	RefSeq	gene	217	690	.	+	.	ID=gene-C9E96_RS09720;Name=C9E96_RS09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09720;old_locus_tag=C9E96_09940
NZ_PYJX01000116.1	Protein Homology	CDS	217	690	.	+	0	ID=cds-WP_001219016.1;Parent=gene-C9E96_RS09720;Dbxref=GenBank:WP_001219016.1;Name=WP_001219016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460952.1;locus_tag=C9E96_RS09720;product=peptidase;protein_id=WP_001219016.1;transl_table=11
NZ_PYJX01000116.1	RefSeq	pseudogene	1165	1632	.	+	.	ID=gene-C9E96_RS09730;Name=C9E96_RS09730;end_range=1632,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS09730;old_locus_tag=C9E96_09950;partial=true;pseudo=true
NZ_PYJX01000116.1	Protein Homology	CDS	1165	1632	.	+	0	ID=cds-C9E96_RS09730;Parent=gene-C9E96_RS09730;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1632,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000517119.1;locus_tag=C9E96_RS09730;partial=true;product=phage integrase N-terminal domain-containing protein;pseudo=true;transl_table=11
NZ_PYJX01000116.1	RefSeq	pseudogene	1718	1996	.	+	.	ID=gene-C9E96_RS09735;Name=C9E96_RS09735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS09735;old_locus_tag=C9E96_09955;partial=true;pseudo=true;start_range=.,1718
NZ_PYJX01000116.1	Protein Homology	CDS	1718	1996	.	+	0	ID=cds-C9E96_RS09735;Parent=gene-C9E96_RS09735;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000950586.1;locus_tag=C9E96_RS09735;partial=true;product=transposase;pseudo=true;start_range=.,1718;transl_table=11
NZ_PYJX01000116.1	RefSeq	gene	2680	4374	.	+	.	ID=gene-C9E96_RS09740;Name=C9E96_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09740;old_locus_tag=C9E96_09960
NZ_PYJX01000116.1	Protein Homology	CDS	2680	4374	.	+	0	ID=cds-WP_077906259.1;Parent=gene-C9E96_RS09740;Dbxref=GenBank:WP_077906259.1;Name=WP_077906259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460954.1;locus_tag=C9E96_RS09740;product=SEL1-like repeat protein;protein_id=WP_077906259.1;transl_table=11
NZ_PYJX01000116.1	RefSeq	gene	4431	6161	.	+	.	ID=gene-C9E96_RS09745;Name=C9E96_RS09745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09745;old_locus_tag=C9E96_09965
NZ_PYJX01000116.1	Protein Homology	CDS	4431	6161	.	+	0	ID=cds-WP_000669124.1;Parent=gene-C9E96_RS09745;Dbxref=GenBank:WP_000669124.1;Name=WP_000669124.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460955.1;locus_tag=C9E96_RS09745;product=hypothetical protein;protein_id=WP_000669124.1;transl_table=11
NZ_PYJX01000116.1	RefSeq	pseudogene	6219	6323	.	-	.	ID=gene-C9E96_RS09750;Name=C9E96_RS09750;end_range=6323,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS09750;old_locus_tag=C9E96_09970;partial=true;pseudo=true
NZ_PYJX01000116.1	Protein Homology	CDS	6219	6323	.	-	0	ID=cds-C9E96_RS09750;Parent=gene-C9E96_RS09750;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=6323,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965590.1;locus_tag=C9E96_RS09750;partial=true;product=DUF520 family protein;pseudo=true;transl_table=11
NZ_PYJX01000116.1	RefSeq	gene	6371	6544	.	+	.	ID=gene-C9E96_RS23950;Name=C9E96_RS23950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23950
NZ_PYJX01000116.1	Protein Homology	CDS	6371	6544	.	+	0	ID=cds-WP_000957535.1;Parent=gene-C9E96_RS23950;Dbxref=GenBank:WP_000957535.1;Name=WP_000957535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000957538.1;locus_tag=C9E96_RS23950;product=hypothetical protein;protein_id=WP_000957535.1;transl_table=11
NZ_PYJX01000116.1	RefSeq	gene	7065	8519	.	-	.	ID=gene-C9E96_RS09760;Name=C9E96_RS09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09760;old_locus_tag=C9E96_09980
NZ_PYJX01000116.1	Protein Homology	CDS	7065	8519	.	-	0	ID=cds-WP_000428191.1;Parent=gene-C9E96_RS09760;Dbxref=GenBank:WP_000428191.1;Name=WP_000428191.1;Ontology_term=GO:0009116,GO:0044209,GO:0008714;gbkey=CDS;go_function=AMP nucleosidase activity|0008714||IEA;go_process=nucleoside metabolic process|0009116||IEA,AMP salvage|0044209||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460956.1;locus_tag=C9E96_RS09760;product=AMP nucleosidase;protein_id=WP_000428191.1;transl_table=11
NZ_PYJX01000116.1	RefSeq	gene	8565	8726	.	+	.	ID=gene-C9E96_RS09765;Name=C9E96_RS09765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09765;old_locus_tag=C9E96_09985
NZ_PYJX01000116.1	Protein Homology	CDS	8565	8726	.	+	0	ID=cds-WP_023888257.1;Parent=gene-C9E96_RS09765;Dbxref=GenBank:WP_023888257.1;Name=WP_023888257.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448416.1;locus_tag=C9E96_RS09765;product=hypothetical protein;protein_id=WP_023888257.1;transl_table=11
NZ_PYJX01000116.1	RefSeq	gene	8715	9041	.	-	.	ID=gene-C9E96_RS09770;Name=C9E96_RS09770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09770;old_locus_tag=C9E96_09990
NZ_PYJX01000116.1	Protein Homology	CDS	8715	9041	.	-	0	ID=cds-WP_000228159.1;Parent=gene-C9E96_RS09770;Dbxref=GenBank:WP_000228159.1;Name=WP_000228159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460958.1;locus_tag=C9E96_RS09770;product=DUF1493 family protein;protein_id=WP_000228159.1;transl_table=11
NZ_PYJX01000116.1	RefSeq	pseudogene	9035	9498	.	-	.	ID=gene-C9E96_RS09775;Name=C9E96_RS09775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS09775;old_locus_tag=C9E96_09995;pseudo=true
NZ_PYJX01000116.1	Protein Homology	CDS	9035	9498	.	-	0	ID=cds-C9E96_RS09775;Parent=gene-C9E96_RS09775;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002211098.1;locus_tag=C9E96_RS09775;product=STM2901 family protein;pseudo=true;transl_table=11
NZ_PYJX01000116.1	RefSeq	gene	9918	9993	.	-	.	ID=gene-C9E96_RS09785;Name=C9E96_RS09785;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS09785;old_locus_tag=C9E96_10005
NZ_PYJX01000116.1	tRNAscan-SE	tRNA	9918	9993	.	-	.	ID=rna-C9E96_RS09785;Parent=gene-C9E96_RS09785;anticodon=(pos:complement(9958..9960));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09785;product=tRNA-Asn
NZ_PYJX01000116.1	tRNAscan-SE	exon	9918	9993	.	-	.	ID=exon-C9E96_RS09785-1;Parent=rna-C9E96_RS09785;anticodon=(pos:complement(9958..9960));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09785;product=tRNA-Asn
NZ_PYJX01000116.1	RefSeq	gene	10134	11350	.	-	.	ID=gene-C9E96_RS09790;Name=C9E96_RS09790;end_range=11350,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09790;old_locus_tag=C9E96_10010;partial=true
NZ_PYJX01000116.1	Protein Homology	CDS	10134	11350	.	-	2	ID=cds-WP_135494162.1;Parent=gene-C9E96_RS09790;Dbxref=GenBank:WP_135494162.1;Name=WP_135494162.1;Ontology_term=GO:0055085,GO:0015297;end_range=11350,.;gbkey=CDS;go_function=antiporter activity|0015297||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460959.1;locus_tag=C9E96_RS09790;partial=true;product=EmmdR/YeeO family multidrug/toxin efflux MATE transporter;protein_id=WP_135494162.1;transl_table=11
##sequence-region NZ_PYJX01000251.1 1 10976
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000251.1	RefSeq	region	1	10976	.	+	.	ID=NZ_PYJX01000251.1:1..10976;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000251.1	RefSeq	pseudogene	1	472	.	+	.	ID=gene-C9E96_RS23820;Name=C9E96_RS23820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23820;old_locus_tag=C9E96_24415;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000251.1	Protein Homology	CDS	1	472	.	+	1	ID=cds-C9E96_RS23820;Parent=gene-C9E96_RS23820;Note=internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460836.1;locus_tag=C9E96_RS23820;partial=true;product=prolyl oligopeptidase family serine peptidase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	507	1205	.	-	.	ID=gene-C9E96_RS23825;Name=exoX;gbkey=Gene;gene=exoX;gene_biotype=protein_coding;locus_tag=C9E96_RS23825;old_locus_tag=C9E96_24420
NZ_PYJX01000251.1	Protein Homology	CDS	507	1205	.	-	0	ID=cds-WP_000944278.1;Parent=gene-C9E96_RS23825;Dbxref=GenBank:WP_000944278.1;Name=WP_000944278.1;gbkey=CDS;gene=exoX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460835.1;locus_tag=C9E96_RS23825;product=exodeoxyribonuclease X;protein_id=WP_000944278.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	1229	1885	.	-	.	ID=gene-C9E96_RS23830;Name=C9E96_RS23830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23830;old_locus_tag=C9E96_24425
NZ_PYJX01000251.1	Protein Homology	CDS	1229	1885	.	-	0	ID=cds-WP_000100256.1;Parent=gene-C9E96_RS23830;Dbxref=GenBank:WP_000100256.1;Name=WP_000100256.1;Ontology_term=GO:0008152;gbkey=CDS;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460834.1;locus_tag=C9E96_RS23830;product=nitrilase-related carbon-nitrogen hydrolase;protein_id=WP_000100256.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	1993	2223	.	-	.	ID=gene-C9E96_RS23835;Name=C9E96_RS23835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23835;old_locus_tag=C9E96_24430
NZ_PYJX01000251.1	Protein Homology	CDS	1993	2223	.	-	0	ID=cds-WP_000856224.1;Parent=gene-C9E96_RS23835;Dbxref=GenBank:WP_000856224.1;Name=WP_000856224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460833.1;locus_tag=C9E96_RS23835;product=DNA polymerase III subunit theta;protein_id=WP_000856224.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	2361	2735	.	+	.	ID=gene-C9E96_RS23840;Name=yobA;gbkey=Gene;gene=yobA;gene_biotype=protein_coding;locus_tag=C9E96_RS23840;old_locus_tag=C9E96_24435
NZ_PYJX01000251.1	Protein Homology	CDS	2361	2735	.	+	0	ID=cds-WP_000168393.1;Parent=gene-C9E96_RS23840;Dbxref=GenBank:WP_000168393.1;Name=WP_000168393.1;Ontology_term=GO:0006825,GO:0046688,GO:0005507;gbkey=CDS;gene=yobA;go_function=copper ion binding|0005507||IEA;go_process=copper ion transport|0006825||IEA,response to copper ion|0046688||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460832.1;locus_tag=C9E96_RS23840;product=CopC domain-containing protein YobA;protein_id=WP_000168393.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	2736	3611	.	+	.	ID=gene-C9E96_RS23845;Name=copD;gbkey=Gene;gene=copD;gene_biotype=protein_coding;locus_tag=C9E96_RS23845;old_locus_tag=C9E96_24440
NZ_PYJX01000251.1	Protein Homology	CDS	2736	3611	.	+	0	ID=cds-WP_000979694.1;Parent=gene-C9E96_RS23845;Dbxref=GenBank:WP_000979694.1;Name=WP_000979694.1;Ontology_term=GO:0006825,GO:0016020;gbkey=CDS;gene=copD;go_component=membrane|0016020||IEA;go_process=copper ion transport|0006825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460831.1;locus_tag=C9E96_RS23845;product=copper homeostasis membrane protein CopD;protein_id=WP_000979694.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	3628	3981	.	+	.	ID=gene-C9E96_RS23850;Name=C9E96_RS23850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23850;old_locus_tag=C9E96_24445
NZ_PYJX01000251.1	Protein Homology	CDS	3628	3981	.	+	0	ID=cds-WP_000722368.1;Parent=gene-C9E96_RS23850;Dbxref=GenBank:WP_000722368.1;Name=WP_000722368.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460830.1;locus_tag=C9E96_RS23850;product=YebY family protein;protein_id=WP_000722368.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	4355	5434	.	-	.	ID=gene-C9E96_RS23855;Name=C9E96_RS23855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23855;old_locus_tag=C9E96_24455
NZ_PYJX01000251.1	Protein Homology	CDS	4355	5434	.	-	0	ID=cds-WP_076735562.1;Parent=gene-C9E96_RS23855;Dbxref=GenBank:WP_076735562.1;Name=WP_076735562.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001189081.1;locus_tag=C9E96_RS23855;product=tyrosine-type recombinase/integrase;protein_id=WP_076735562.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	5415	5687	.	-	.	ID=gene-C9E96_RS23860;Name=C9E96_RS23860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23860;old_locus_tag=C9E96_24460
NZ_PYJX01000251.1	Protein Homology	CDS	5415	5687	.	-	0	ID=cds-WP_078061180.1;Parent=gene-C9E96_RS23860;Dbxref=GenBank:WP_078061180.1;Name=WP_078061180.1;Ontology_term=GO:0006310,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001575998.1;locus_tag=C9E96_RS23860;product=excisionase;protein_id=WP_078061180.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	5748	6176	.	-	.	ID=gene-C9E96_RS24100;Name=C9E96_RS24100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24100
NZ_PYJX01000251.1	Protein Homology	CDS	5748	6176	.	-	0	ID=cds-WP_076735563.1;Parent=gene-C9E96_RS24100;Dbxref=GenBank:WP_076735563.1;Name=WP_076735563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000743304.1;locus_tag=C9E96_RS24100;product=hypothetical protein;protein_id=WP_076735563.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	6173	8257	.	-	.	ID=gene-C9E96_RS23870;Name=C9E96_RS23870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23870;old_locus_tag=C9E96_24470
NZ_PYJX01000251.1	Protein Homology	CDS	6173	8257	.	-	0	ID=cds-WP_135494780.1;Parent=gene-C9E96_RS23870;Dbxref=GenBank:WP_135494780.1;Name=WP_135494780.1;Ontology_term=GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524362.1;locus_tag=C9E96_RS23870;product=DNA cytosine methyltransferase;protein_id=WP_135494780.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	8254	8511	.	-	.	ID=gene-C9E96_RS23875;Name=C9E96_RS23875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23875;old_locus_tag=C9E96_24475
NZ_PYJX01000251.1	Protein Homology	CDS	8254	8511	.	-	0	ID=cds-WP_135369894.1;Parent=gene-C9E96_RS23875;Dbxref=GenBank:WP_135369894.1;Name=WP_135369894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524382.1;locus_tag=C9E96_RS23875;product=hypothetical protein;protein_id=WP_135369894.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	8605	8784	.	-	.	ID=gene-C9E96_RS23880;Name=C9E96_RS23880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23880;old_locus_tag=C9E96_24480
NZ_PYJX01000251.1	Protein Homology	CDS	8605	8784	.	-	0	ID=cds-WP_000276802.1;Parent=gene-C9E96_RS23880;Dbxref=GenBank:WP_000276802.1;Name=WP_000276802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000276802.1;locus_tag=C9E96_RS23880;product=DUF1187 family protein;protein_id=WP_000276802.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	8772	9614	.	-	.	ID=gene-C9E96_RS23885;Name=C9E96_RS23885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23885;old_locus_tag=C9E96_24485
NZ_PYJX01000251.1	Protein Homology	CDS	8772	9614	.	-	0	ID=cds-WP_058116350.1;Parent=gene-C9E96_RS23885;Dbxref=GenBank:WP_058116350.1;Name=WP_058116350.1;Ontology_term=GO:0032775,GO:0003677,GO:0009007;gbkey=CDS;go_function=DNA binding|0003677||IEA,site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA;go_process=obsolete DNA methylation on adenine|0032775||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001008259.1;locus_tag=C9E96_RS23885;product=DNA adenine methylase;protein_id=WP_058116350.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	9611	9844	.	-	.	ID=gene-C9E96_RS23890;Name=C9E96_RS23890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23890;old_locus_tag=C9E96_24490
NZ_PYJX01000251.1	Protein Homology	CDS	9611	9844	.	-	0	ID=cds-WP_000070065.1;Parent=gene-C9E96_RS23890;Dbxref=GenBank:WP_000070065.1;Name=WP_000070065.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000070065.1;locus_tag=C9E96_RS23890;product=hypothetical protein;protein_id=WP_000070065.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	gene	9879	10709	.	-	.	ID=gene-C9E96_RS23895;Name=recT;gbkey=Gene;gene=recT;gene_biotype=protein_coding;locus_tag=C9E96_RS23895;old_locus_tag=C9E96_24495
NZ_PYJX01000251.1	Protein Homology	CDS	9879	10709	.	-	0	ID=cds-WP_001534364.1;Parent=gene-C9E96_RS23895;Dbxref=GenBank:WP_001534364.1;Name=WP_001534364.1;Ontology_term=GO:0006259,GO:0003677;gbkey=CDS;gene=recT;go_function=DNA binding|0003677||IEA;go_process=DNA metabolic process|0006259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001126028.1;locus_tag=C9E96_RS23895;product=recombination protein RecT;protein_id=WP_001534364.1;transl_table=11
NZ_PYJX01000251.1	RefSeq	pseudogene	10702	10976	.	-	.	ID=gene-C9E96_RS23900;Name=C9E96_RS23900;end_range=10976,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23900;old_locus_tag=C9E96_24500;partial=true;pseudo=true
NZ_PYJX01000251.1	Protein Homology	CDS	10702	10976	.	-	2	ID=cds-C9E96_RS23900;Parent=gene-C9E96_RS23900;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=10976,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000023732.1;locus_tag=C9E96_RS23900;partial=true;product=PD-(D/E)XK nuclease-like domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000159.1 1 54418
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000159.1	RefSeq	region	1	54418	.	+	.	ID=NZ_PYJX01000159.1:1..54418;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000159.1	RefSeq	gene	1	259	.	-	.	ID=gene-C9E96_RS14285;Name=dedD;gbkey=Gene;gene=dedD;gene_biotype=protein_coding;locus_tag=C9E96_RS14285;old_locus_tag=C9E96_14645;partial=true;start_range=.,1
NZ_PYJX01000159.1	Protein Homology	CDS	1	259	.	-	0	ID=cds-WP_135494326.1;Parent=gene-C9E96_RS14285;Dbxref=GenBank:WP_135494326.1;Name=WP_135494326.1;Ontology_term=GO:0032506,GO:0042834,GO:0030428;gbkey=CDS;gene=dedD;go_component=cell septum|0030428||IEA;go_function=peptidoglycan binding|0042834||IEA;go_process=cytokinetic process|0032506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461306.1;locus_tag=C9E96_RS14285;partial=true;product=cell division protein DedD;protein_id=WP_135494326.1;start_range=.,1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	249	1517	.	-	.	ID=gene-C9E96_RS14290;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=C9E96_RS14290;old_locus_tag=C9E96_14650
NZ_PYJX01000159.1	Protein Homology	CDS	249	1517	.	-	0	ID=cds-WP_080203999.1;Parent=gene-C9E96_RS14290;Dbxref=GenBank:WP_080203999.1;Name=WP_080203999.1;Ontology_term=GO:0009396,GO:0004326,GO:0005524,GO:0016874;gbkey=CDS;gene=folC;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461307.1;locus_tag=C9E96_RS14290;product=bifunctional tetrahydrofolate synthase/dihydrofolate synthase;protein_id=WP_080203999.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	1585	2499	.	-	.	ID=gene-C9E96_RS14295;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=C9E96_RS14295;old_locus_tag=C9E96_14655
NZ_PYJX01000159.1	Protein Homology	CDS	1585	2499	.	-	0	ID=cds-WP_000118383.1;Parent=gene-C9E96_RS14295;Dbxref=GenBank:WP_000118383.1;Name=WP_000118383.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accD;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461308.1;locus_tag=C9E96_RS14295;product=acetyl-CoA carboxylase%2C carboxyltransferase subunit beta;protein_id=WP_000118383.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	2649	3308	.	-	.	ID=gene-C9E96_RS14300;Name=C9E96_RS14300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14300;old_locus_tag=C9E96_14660
NZ_PYJX01000159.1	Protein Homology	CDS	2649	3308	.	-	0	ID=cds-WP_000364318.1;Parent=gene-C9E96_RS14300;Dbxref=GenBank:WP_000364318.1;Name=WP_000364318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461309.1;locus_tag=C9E96_RS14300;product=DedA family protein;protein_id=WP_000364318.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	3357	4169	.	-	.	ID=gene-C9E96_RS14305;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=C9E96_RS14305;old_locus_tag=C9E96_14665
NZ_PYJX01000159.1	Protein Homology	CDS	3357	4169	.	-	0	ID=cds-WP_000016631.1;Parent=gene-C9E96_RS14305;Dbxref=GenBank:WP_000016631.1;Name=WP_000016631.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461310.1;locus_tag=C9E96_RS14305;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=WP_000016631.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	4169	5182	.	-	.	ID=gene-C9E96_RS14310;Name=C9E96_RS14310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14310;old_locus_tag=C9E96_14670
NZ_PYJX01000159.1	Protein Homology	CDS	4169	5182	.	-	0	ID=cds-WP_001289141.1;Parent=gene-C9E96_RS14310;Dbxref=GenBank:WP_001289141.1;Name=WP_001289141.1;Ontology_term=GO:0008652,GO:0016620,GO:0046983,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,protein dimerization activity|0046983||IEA,NAD binding|0051287||IEA;go_process=amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461311.1;locus_tag=C9E96_RS14310;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_001289141.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	5250	6386	.	-	.	ID=gene-C9E96_RS14315;Name=pdxB;gbkey=Gene;gene=pdxB;gene_biotype=protein_coding;locus_tag=C9E96_RS14315;old_locus_tag=C9E96_14675
NZ_PYJX01000159.1	Protein Homology	CDS	5250	6386	.	-	0	ID=cds-WP_000699176.1;Parent=gene-C9E96_RS14315;Dbxref=GenBank:WP_000699176.1;Name=WP_000699176.1;Ontology_term=GO:0008615,GO:0033711,GO:0046983,GO:0051287;gbkey=CDS;gene=pdxB;go_function=4-phosphoerythronate dehydrogenase activity|0033711||IEA,protein dimerization activity|0046983||IEA,NAD binding|0051287||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461312.1;locus_tag=C9E96_RS14315;product=4-phosphoerythronate dehydrogenase PdxB;protein_id=WP_000699176.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	6490	7491	.	+	.	ID=gene-C9E96_RS14320;Name=flk;gbkey=Gene;gene=flk;gene_biotype=protein_coding;locus_tag=C9E96_RS14320;old_locus_tag=C9E96_14680
NZ_PYJX01000159.1	Protein Homology	CDS	6490	7491	.	+	0	ID=cds-WP_000553395.1;Parent=gene-C9E96_RS14320;Dbxref=GenBank:WP_000553395.1;Name=WP_000553395.1;Ontology_term=GO:0010468,GO:0016020;gbkey=CDS;gene=flk;go_component=membrane|0016020||IEA;go_process=regulation of gene expression|0010468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461313.1;locus_tag=C9E96_RS14320;product=flagella biosynthesis regulator Flk;protein_id=WP_000553395.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	7488	8666	.	-	.	ID=gene-C9E96_RS14325;Name=C9E96_RS14325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14325;old_locus_tag=C9E96_14685
NZ_PYJX01000159.1	Protein Homology	CDS	7488	8666	.	-	0	ID=cds-WP_000127722.1;Parent=gene-C9E96_RS14325;Dbxref=GenBank:WP_000127722.1;Name=WP_000127722.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461314.1;locus_tag=C9E96_RS14325;product=MFS transporter;protein_id=WP_000127722.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	8846	9220	.	-	.	ID=gene-C9E96_RS14330;Name=C9E96_RS14330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14330;old_locus_tag=C9E96_14690
NZ_PYJX01000159.1	Protein Homology	CDS	8846	9220	.	-	0	ID=cds-WP_023138696.1;Parent=gene-C9E96_RS14330;Dbxref=GenBank:WP_023138696.1;Name=WP_023138696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461315.1;locus_tag=C9E96_RS14330;product=hypothetical protein;protein_id=WP_023138696.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	pseudogene	9393	9524	.	+	.	ID=gene-C9E96_RS14335;Name=C9E96_RS14335;end_range=9524,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS14335;old_locus_tag=C9E96_14695;partial=true;pseudo=true
NZ_PYJX01000159.1	Protein Homology	CDS	9393	9524	.	+	0	ID=cds-C9E96_RS14335;Parent=gene-C9E96_RS14335;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=9524,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461316.1;locus_tag=C9E96_RS14335;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11
NZ_PYJX01000159.1	RefSeq	pseudogene	9470	9787	.	+	.	ID=gene-C9E96_RS24535;Name=C9E96_RS24535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24535;old_locus_tag=C9E96_14700;partial=true;pseudo=true;start_range=.,9470
NZ_PYJX01000159.1	Protein Homology	CDS	9470	9787	.	+	0	ID=cds-C9E96_RS24535;Parent=gene-C9E96_RS24535;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461317.1;locus_tag=C9E96_RS24535;partial=true;product=hypothetical protein;pseudo=true;start_range=.,9470;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	9787	10305	.	+	.	ID=gene-C9E96_RS14340;Name=C9E96_RS14340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14340;old_locus_tag=C9E96_14705
NZ_PYJX01000159.1	Protein Homology	CDS	9787	10305	.	+	0	ID=cds-WP_076735823.1;Parent=gene-C9E96_RS14340;Dbxref=GenBank:WP_076735823.1;Name=WP_076735823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461318.1;locus_tag=C9E96_RS14340;product=YbjP/YqhG family protein;protein_id=WP_076735823.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	10372	11028	.	-	.	ID=gene-C9E96_RS14345;Name=C9E96_RS14345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14345;old_locus_tag=C9E96_14710
NZ_PYJX01000159.1	Protein Homology	CDS	10372	11028	.	-	0	ID=cds-WP_001142914.1;Parent=gene-C9E96_RS14345;Dbxref=GenBank:WP_001142914.1;Name=WP_001142914.1;Ontology_term=GO:0071586,GO:0004222,GO:0070007,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,glutamic-type endopeptidase activity|0070007||IEA;go_process=CAAX-box protein processing|0071586||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461319.1;locus_tag=C9E96_RS14345;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_001142914.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	11126	12340	.	-	.	ID=gene-C9E96_RS14350;Name=fabB;gbkey=Gene;gene=fabB;gene_biotype=protein_coding;locus_tag=C9E96_RS14350;old_locus_tag=C9E96_14715
NZ_PYJX01000159.1	Protein Homology	CDS	11126	12340	.	-	0	ID=cds-WP_135494328.1;Parent=gene-C9E96_RS14350;Dbxref=GenBank:WP_135494328.1;Name=WP_135494328.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabB;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461320.1;locus_tag=C9E96_RS14350;product=beta-ketoacyl-ACP synthase I;protein_id=WP_135494328.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	12500	14500	.	+	.	ID=gene-C9E96_RS14355;Name=mnmC;gbkey=Gene;gene=mnmC;gene_biotype=protein_coding;locus_tag=C9E96_RS14355;old_locus_tag=C9E96_14720
NZ_PYJX01000159.1	Protein Homology	CDS	12500	14500	.	+	0	ID=cds-WP_167852892.1;Parent=gene-C9E96_RS14355;Dbxref=GenBank:WP_167852892.1;Name=WP_167852892.1;Ontology_term=GO:0008033,GO:0004808,GO:0016491;gbkey=CDS;gene=mnmC;go_function=tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity|0004808||IEA,oxidoreductase activity|0016491||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001540542.1;locus_tag=C9E96_RS14355;product=bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;protein_id=WP_167852892.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	14552	14827	.	-	.	ID=gene-C9E96_RS14360;Name=C9E96_RS14360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14360;old_locus_tag=C9E96_14725
NZ_PYJX01000159.1	Protein Homology	CDS	14552	14827	.	-	0	ID=cds-WP_000559749.1;Parent=gene-C9E96_RS14360;Dbxref=GenBank:WP_000559749.1;Name=WP_000559749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461322.1;locus_tag=C9E96_RS14360;product=YfcL family protein;protein_id=WP_000559749.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	14860	15408	.	-	.	ID=gene-C9E96_RS14365;Name=C9E96_RS14365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14365;old_locus_tag=C9E96_14730
NZ_PYJX01000159.1	Protein Homology	CDS	14860	15408	.	-	0	ID=cds-WP_001066345.1;Parent=gene-C9E96_RS14365;Dbxref=GenBank:WP_001066345.1;Name=WP_001066345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461323.1;locus_tag=C9E96_RS14365;product=elongation factor P hydroxylase;protein_id=WP_001066345.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	15408	16217	.	-	.	ID=gene-C9E96_RS14370;Name=C9E96_RS14370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14370;old_locus_tag=C9E96_14735
NZ_PYJX01000159.1	Protein Homology	CDS	15408	16217	.	-	0	ID=cds-WP_000368599.1;Parent=gene-C9E96_RS14370;Dbxref=GenBank:WP_000368599.1;Name=WP_000368599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461324.1;locus_tag=C9E96_RS14370;product=sulfite exporter TauE/SafE family protein;protein_id=WP_000368599.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	16217	17041	.	-	.	ID=gene-C9E96_RS14375;Name=mepA;gbkey=Gene;gene=mepA;gene_biotype=protein_coding;locus_tag=C9E96_RS14375;old_locus_tag=C9E96_14740
NZ_PYJX01000159.1	Protein Homology	CDS	16217	17041	.	-	0	ID=cds-WP_000750429.1;Parent=gene-C9E96_RS14375;Dbxref=GenBank:WP_000750429.1;Name=WP_000750429.1;Ontology_term=GO:0006508,GO:0004252,GO:0030288;gbkey=CDS;gene=mepA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461325.1;locus_tag=C9E96_RS14375;product=penicillin-insensitive murein endopeptidase;protein_id=WP_000750429.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	17045	18130	.	-	.	ID=gene-C9E96_RS14380;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=C9E96_RS14380;old_locus_tag=C9E96_14745
NZ_PYJX01000159.1	Protein Homology	CDS	17045	18130	.	-	0	ID=cds-WP_000918456.1;Parent=gene-C9E96_RS14380;Dbxref=GenBank:WP_000918456.1;Name=WP_000918456.1;Ontology_term=GO:0009073,GO:0004107;gbkey=CDS;gene=aroC;go_function=chorismate synthase activity|0004107||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129642.1;locus_tag=C9E96_RS14380;product=chorismate synthase;protein_id=WP_000918456.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	18166	19098	.	-	.	ID=gene-C9E96_RS14385;Name=prmB;gbkey=Gene;gene=prmB;gene_biotype=protein_coding;locus_tag=C9E96_RS14385;old_locus_tag=C9E96_14750
NZ_PYJX01000159.1	Protein Homology	CDS	18166	19098	.	-	0	ID=cds-WP_001542329.1;Parent=gene-C9E96_RS14385;Dbxref=GenBank:WP_001542329.1;Name=WP_001542329.1;Ontology_term=GO:0018364,GO:0042273,GO:0008276,GO:0008757;gbkey=CDS;gene=prmB;go_function=protein methyltransferase activity|0008276||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=peptidyl-glutamine methylation|0018364||IEA,ribosomal large subunit biogenesis|0042273||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129736.1;locus_tag=C9E96_RS14385;product=50S ribosomal protein L3 N(5)-glutamine methyltransferase;protein_id=WP_001542329.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	19264	19815	.	+	.	ID=gene-C9E96_RS14390;Name=smrB;gbkey=Gene;gene=smrB;gene_biotype=protein_coding;locus_tag=C9E96_RS14390;old_locus_tag=C9E96_14755
NZ_PYJX01000159.1	Protein Homology	CDS	19264	19815	.	+	0	ID=cds-WP_000730794.1;Parent=gene-C9E96_RS14390;Dbxref=GenBank:WP_000730794.1;Name=WP_000730794.1;gbkey=CDS;gene=smrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461328.1;locus_tag=C9E96_RS14390;product=endonuclease SmrB;protein_id=WP_000730794.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	19915	20400	.	-	.	ID=gene-C9E96_RS14395;Name=sixA;gbkey=Gene;gene=sixA;gene_biotype=protein_coding;locus_tag=C9E96_RS14395;old_locus_tag=C9E96_14760
NZ_PYJX01000159.1	Protein Homology	CDS	19915	20400	.	-	0	ID=cds-WP_001195800.1;Parent=gene-C9E96_RS14395;Dbxref=GenBank:WP_001195800.1;Name=WP_001195800.1;Ontology_term=GO:0036211,GO:0101006,GO:0005737;gbkey=CDS;gene=sixA;go_component=cytoplasm|0005737||IEA;go_function=protein histidine phosphatase activity|0101006||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461329.1;locus_tag=C9E96_RS14395;product=phosphohistidine phosphatase SixA;protein_id=WP_001195800.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	20609	22756	.	-	.	ID=gene-C9E96_RS14400;Name=fadJ;gbkey=Gene;gene=fadJ;gene_biotype=protein_coding;locus_tag=C9E96_RS14400;old_locus_tag=C9E96_14765
NZ_PYJX01000159.1	Protein Homology	CDS	20609	22756	.	-	0	ID=cds-WP_000214145.1;Parent=gene-C9E96_RS14400;Dbxref=GenBank:WP_000214145.1;Name=WP_000214145.1;Ontology_term=GO:0009062,GO:0003857,GO:0004300,GO:0008692,GO:0051287;gbkey=CDS;gene=fadJ;go_function=3-hydroxyacyl-CoA dehydrogenase activity|0003857||IEA,enoyl-CoA hydratase activity|0004300||IEA,3-hydroxybutyryl-CoA epimerase activity|0008692||IEA,NAD binding|0051287||IEA;go_process=fatty acid catabolic process|0009062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461330.1;locus_tag=C9E96_RS14400;product=fatty acid oxidation complex subunit alpha FadJ;protein_id=WP_000214145.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	22756	24066	.	-	.	ID=gene-C9E96_RS14405;Name=fadI;gbkey=Gene;gene=fadI;gene_biotype=protein_coding;locus_tag=C9E96_RS14405;old_locus_tag=C9E96_14770
NZ_PYJX01000159.1	Protein Homology	CDS	22756	24066	.	-	0	ID=cds-WP_001248130.1;Parent=gene-C9E96_RS14405;Dbxref=GenBank:WP_001248130.1;Name=WP_001248130.1;Ontology_term=GO:0006631,GO:0016042,GO:0003988,GO:0005737;gbkey=CDS;gene=fadI;go_component=cytoplasm|0005737||IEA;go_function=acetyl-CoA C-acyltransferase activity|0003988||IEA;go_process=fatty acid metabolic process|0006631||IEA,lipid catabolic process|0016042||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461331.2;locus_tag=C9E96_RS14405;product=acetyl-CoA C-acyltransferase FadI;protein_id=WP_001248130.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	24244	24528	.	-	.	ID=gene-C9E96_RS14410;Name=C9E96_RS14410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14410;old_locus_tag=C9E96_14775
NZ_PYJX01000159.1	Protein Homology	CDS	24244	24528	.	-	0	ID=cds-WP_000030904.1;Parent=gene-C9E96_RS14410;Dbxref=GenBank:WP_000030904.1;Name=WP_000030904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129756.1;locus_tag=C9E96_RS14410;product=YfcZ/YiiS family protein;protein_id=WP_000030904.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	24899	26206	.	+	.	ID=gene-C9E96_RS14415;Name=fadL;gbkey=Gene;gene=fadL;gene_biotype=protein_coding;locus_tag=C9E96_RS14415;old_locus_tag=C9E96_14780
NZ_PYJX01000159.1	Protein Homology	CDS	24899	26206	.	+	0	ID=cds-WP_001533060.1;Parent=gene-C9E96_RS14415;Dbxref=GenBank:WP_001533060.1;Name=WP_001533060.1;gbkey=CDS;gene=fadL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416846.2;locus_tag=C9E96_RS14415;product=long-chain fatty acid transporter FadL;protein_id=WP_001533060.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	26267	27022	.	-	.	ID=gene-C9E96_RS14420;Name=mlaA;gbkey=Gene;gene=mlaA;gene_biotype=protein_coding;locus_tag=C9E96_RS14420;old_locus_tag=C9E96_14785
NZ_PYJX01000159.1	Protein Homology	CDS	26267	27022	.	-	0	ID=cds-WP_000776787.1;Parent=gene-C9E96_RS14420;Dbxref=GenBank:WP_000776787.1;Name=WP_000776787.1;Ontology_term=GO:0016020;gbkey=CDS;gene=mlaA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461334.1;locus_tag=C9E96_RS14420;product=phospholipid-binding lipoprotein MlaA;protein_id=WP_000776787.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	27311	28252	.	+	.	ID=gene-C9E96_RS14425;Name=C9E96_RS14425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14425;old_locus_tag=C9E96_14790
NZ_PYJX01000159.1	Protein Homology	CDS	27311	28252	.	+	0	ID=cds-WP_000377769.1;Parent=gene-C9E96_RS14425;Dbxref=GenBank:WP_000377769.1;Name=WP_000377769.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461335.1;locus_tag=C9E96_RS14425;product=formate/nitrite transporter family protein;protein_id=WP_000377769.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	28328	28402	.	+	.	ID=gene-C9E96_RS14430;Name=C9E96_RS14430;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS14430;old_locus_tag=C9E96_14795
NZ_PYJX01000159.1	tRNAscan-SE	tRNA	28328	28402	.	+	.	ID=rna-C9E96_RS14430;Parent=gene-C9E96_RS14430;anticodon=(pos:28361..28363);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14430;product=tRNA-Arg
NZ_PYJX01000159.1	tRNAscan-SE	exon	28328	28402	.	+	.	ID=exon-C9E96_RS14430-1;Parent=rna-C9E96_RS14430;anticodon=(pos:28361..28363);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14430;product=tRNA-Arg
NZ_PYJX01000159.1	RefSeq	gene	28559	29497	.	-	.	ID=gene-C9E96_RS14435;Name=pgtE;gbkey=Gene;gene=pgtE;gene_biotype=protein_coding;locus_tag=C9E96_RS14435;old_locus_tag=C9E96_14800
NZ_PYJX01000159.1	Protein Homology	CDS	28559	29497	.	-	0	ID=cds-WP_000716009.1;Parent=gene-C9E96_RS14435;Dbxref=GenBank:WP_000716009.1;Name=WP_000716009.1;gbkey=CDS;gene=pgtE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461336.1;locus_tag=C9E96_RS14435;product=omptin family outer membrane protease PgtE;protein_id=WP_000716009.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	29765	31012	.	-	.	ID=gene-C9E96_RS14440;Name=pgtA;gbkey=Gene;gene=pgtA;gene_biotype=protein_coding;locus_tag=C9E96_RS14440;old_locus_tag=C9E96_14805
NZ_PYJX01000159.1	Protein Homology	CDS	29765	31012	.	-	0	ID=cds-WP_135494336.1;Parent=gene-C9E96_RS14440;Dbxref=GenBank:WP_135494336.1;Name=WP_135494336.1;Ontology_term=GO:0000160,GO:0006355,GO:0005524,GO:0043565;gbkey=CDS;gene=pgtA;go_function=ATP binding|0005524||IEA,sequence-specific DNA binding|0043565||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461337.1;locus_tag=C9E96_RS14440;product=two-component system response regulator PgtA;protein_id=WP_135494336.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	31002	33008	.	-	.	ID=gene-C9E96_RS14445;Name=pgtB;gbkey=Gene;gene=pgtB;gene_biotype=protein_coding;locus_tag=C9E96_RS14445;old_locus_tag=C9E96_14810
NZ_PYJX01000159.1	Protein Homology	CDS	31002	33008	.	-	0	ID=cds-WP_135494332.1;Parent=gene-C9E96_RS14445;Dbxref=GenBank:WP_135494332.1;Name=WP_135494332.1;Ontology_term=GO:0000160,GO:0000155,GO:0005524;gbkey=CDS;gene=pgtB;go_function=phosphorelay sensor kinase activity|0000155||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461338.1;locus_tag=C9E96_RS14445;product=two-component system sensor histidine kinase PgtB;protein_id=WP_135494332.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	33005	34198	.	-	.	ID=gene-C9E96_RS14450;Name=pgtC;gbkey=Gene;gene=pgtC;gene_biotype=protein_coding;locus_tag=C9E96_RS14450;old_locus_tag=C9E96_14815
NZ_PYJX01000159.1	Protein Homology	CDS	33005	34198	.	-	0	ID=cds-WP_000467983.1;Parent=gene-C9E96_RS14450;Dbxref=GenBank:WP_000467983.1;Name=WP_000467983.1;gbkey=CDS;gene=pgtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461339.1;locus_tag=C9E96_RS14450;product=phosphoglycerate transport regulator PgtC;protein_id=WP_000467983.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	34634	36025	.	+	.	ID=gene-C9E96_RS14460;Name=pgtP;gbkey=Gene;gene=pgtP;gene_biotype=protein_coding;locus_tag=C9E96_RS14460;old_locus_tag=C9E96_14825
NZ_PYJX01000159.1	Protein Homology	CDS	34634	36025	.	+	0	ID=cds-WP_080203996.1;Parent=gene-C9E96_RS14460;Dbxref=GenBank:WP_080203996.1;Name=WP_080203996.1;Ontology_term=GO:0015760,GO:0035435,GO:0061513;gbkey=CDS;gene=pgtP;go_function=glucose 6-phosphate:phosphate antiporter activity|0061513||IEA;go_process=glucose-6-phosphate transport|0015760||IEA,phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461340.1;locus_tag=C9E96_RS14460;product=phosphoglycerate transporter PgtP;protein_id=WP_080203996.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	36300	36542	.	-	.	ID=gene-C9E96_RS14465;Name=C9E96_RS14465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14465;old_locus_tag=C9E96_14830
NZ_PYJX01000159.1	Protein Homology	CDS	36300	36542	.	-	0	ID=cds-WP_000639889.1;Parent=gene-C9E96_RS14465;Dbxref=GenBank:WP_000639889.1;Name=WP_000639889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461341.1;locus_tag=C9E96_RS14465;product=YfdY family protein;protein_id=WP_000639889.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	37064	37984	.	+	.	ID=gene-C9E96_RS14470;Name=lpxP;gbkey=Gene;gene=lpxP;gene_biotype=protein_coding;locus_tag=C9E96_RS14470;old_locus_tag=C9E96_14835
NZ_PYJX01000159.1	Protein Homology	CDS	37064	37984	.	+	0	ID=cds-WP_000484428.1;Parent=gene-C9E96_RS14470;Dbxref=GenBank:WP_000484428.1;Name=WP_000484428.1;Ontology_term=GO:0009409,GO:0036104,GO:0008951,GO:0016020;gbkey=CDS;gene=lpxP;go_component=membrane|0016020||IEA;go_function=palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity|0008951||IEA;go_process=response to cold|0009409||IEA,Kdo2-lipid A biosynthetic process|0036104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461342.1;locus_tag=C9E96_RS14470;product=kdo(2)-lipid IV(A) palmitoleoyltransferase;protein_id=WP_000484428.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	38387	38458	.	+	.	ID=gene-C9E96_RS14475;Name=ypdK;gbkey=Gene;gene=ypdK;gene_biotype=protein_coding;locus_tag=C9E96_RS14475;old_locus_tag=C9E96_14840
NZ_PYJX01000159.1	Protein Homology	CDS	38387	38458	.	+	0	ID=cds-WP_010723117.1;Parent=gene-C9E96_RS14475;Dbxref=GenBank:WP_010723117.1;Name=WP_010723117.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ypdK;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_077777854.1;locus_tag=C9E96_RS14475;product=membrane protein YpdK;protein_id=WP_010723117.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	38508	39746	.	-	.	ID=gene-C9E96_RS14480;Name=alaC;gbkey=Gene;gene=alaC;gene_biotype=protein_coding;locus_tag=C9E96_RS14480;old_locus_tag=C9E96_14845
NZ_PYJX01000159.1	Protein Homology	CDS	38508	39746	.	-	0	ID=cds-WP_000763118.1;Parent=gene-C9E96_RS14480;Dbxref=GenBank:WP_000763118.1;Name=WP_000763118.1;Ontology_term=GO:0009058,GO:0003824,GO:0030170;gbkey=CDS;gene=alaC;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461343.1;locus_tag=C9E96_RS14480;product=alanine transaminase;protein_id=WP_000763118.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	40468	41433	.	-	.	ID=gene-C9E96_RS14485;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=C9E96_RS14485;old_locus_tag=C9E96_14850
NZ_PYJX01000159.1	Protein Homology	CDS	40468	41433	.	-	0	ID=cds-WP_000170376.1;Parent=gene-C9E96_RS14485;Dbxref=GenBank:WP_000170376.1;Name=WP_000170376.1;Ontology_term=GO:0006096,GO:0051156,GO:0004340,GO:0005524,GO:0005536;gbkey=CDS;gene=glk;go_function=glucokinase activity|0004340||IEA,ATP binding|0005524||IEA,D-glucose binding|0005536||IEA;go_process=glycolytic process|0006096||IEA,glucose 6-phosphate metabolic process|0051156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461344.1;locus_tag=C9E96_RS14485;product=glucokinase;protein_id=WP_000170376.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	41638	42873	.	+	.	ID=gene-C9E96_RS14490;Name=C9E96_RS14490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14490;old_locus_tag=C9E96_14855
NZ_PYJX01000159.1	Protein Homology	CDS	41638	42873	.	+	0	ID=cds-WP_110398689.1;Parent=gene-C9E96_RS14490;Dbxref=GenBank:WP_110398689.1;Name=WP_110398689.1;Ontology_term=GO:0005247;gbkey=CDS;go_function=voltage-gated chloride channel activity|0005247||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461345.1;locus_tag=C9E96_RS14490;product=ion channel protein;protein_id=WP_110398689.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	42893	44545	.	-	.	ID=gene-C9E96_RS14495;Name=C9E96_RS14495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14495;old_locus_tag=C9E96_14860
NZ_PYJX01000159.1	Protein Homology	CDS	42893	44545	.	-	0	ID=cds-WP_135494334.1;Parent=gene-C9E96_RS14495;Dbxref=GenBank:WP_135494334.1;Name=WP_135494334.1;Ontology_term=GO:0016831,GO:0030976,GO:0046872;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA,thiamine pyrophosphate binding|0030976||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461346.1;locus_tag=C9E96_RS14495;product=alpha-keto acid decarboxylase family protein;protein_id=WP_135494334.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	44725	45723	.	+	.	ID=gene-C9E96_RS14500;Name=mgrA;gbkey=Gene;gene=mgrA;gene_biotype=protein_coding;locus_tag=C9E96_RS14500;old_locus_tag=C9E96_14865
NZ_PYJX01000159.1	Protein Homology	CDS	44725	45723	.	+	0	ID=cds-WP_000640293.1;Parent=gene-C9E96_RS14500;Dbxref=GenBank:WP_000640293.1;Name=WP_000640293.1;Ontology_term=GO:0047834;gbkey=CDS;gene=mgrA;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461347.1;locus_tag=C9E96_RS14500;product=L-glyceraldehyde 3-phosphate reductase;protein_id=WP_000640293.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	45837	46163	.	+	.	ID=gene-C9E96_RS14505;Name=ypeC;gbkey=Gene;gene=ypeC;gene_biotype=protein_coding;locus_tag=C9E96_RS14505;old_locus_tag=C9E96_14870
NZ_PYJX01000159.1	Protein Homology	CDS	45837	46163	.	+	0	ID=cds-WP_000490091.1;Parent=gene-C9E96_RS14505;Dbxref=GenBank:WP_000490091.1;Name=WP_000490091.1;gbkey=CDS;gene=ypeC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461348.1;locus_tag=C9E96_RS14505;product=DUF2502 domain-containing protein YpeC;protein_id=WP_000490091.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	46224	47465	.	-	.	ID=gene-C9E96_RS14510;Name=C9E96_RS14510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14510;old_locus_tag=C9E96_14875
NZ_PYJX01000159.1	Protein Homology	CDS	46224	47465	.	-	0	ID=cds-WP_000131734.1;Parent=gene-C9E96_RS14510;Dbxref=GenBank:WP_000131734.1;Name=WP_000131734.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461349.1;locus_tag=C9E96_RS14510;product=Nramp family divalent metal transporter;protein_id=WP_000131734.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	47458	47535	.	-	.	ID=gene-C9E96_RS24540;Name=C9E96_RS24540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24540
NZ_PYJX01000159.1	Protein Homology	CDS	47458	47535	.	-	0	ID=cds-WP_418144572.1;Parent=gene-C9E96_RS24540;Dbxref=GenBank:WP_418144572.1;Name=WP_418144572.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049535.1;locus_tag=C9E96_RS24540;product=hypothetical protein;protein_id=WP_418144572.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	47808	49010	.	+	.	ID=gene-C9E96_RS14515;Name=nupC;gbkey=Gene;gene=nupC;gene_biotype=protein_coding;locus_tag=C9E96_RS14515;old_locus_tag=C9E96_14880
NZ_PYJX01000159.1	Protein Homology	CDS	47808	49010	.	+	0	ID=cds-WP_000376347.1;Parent=gene-C9E96_RS14515;Dbxref=GenBank:WP_000376347.1;Name=WP_000376347.1;gbkey=CDS;gene=nupC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461350.1;locus_tag=C9E96_RS14515;product=nucleoside permease NupC;protein_id=WP_000376347.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	49063	51252	.	-	.	ID=gene-C9E96_RS14520;Name=C9E96_RS14520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14520;old_locus_tag=C9E96_14885
NZ_PYJX01000159.1	Protein Homology	CDS	49063	51252	.	-	0	ID=cds-WP_001112948.1;Parent=gene-C9E96_RS14520;Dbxref=GenBank:WP_001112948.1;Name=WP_001112948.1;Ontology_term=GO:0000160,GO:0007165,GO:0071111;gbkey=CDS;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461351.1;locus_tag=C9E96_RS14520;product=EAL domain-containing protein;protein_id=WP_001112948.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	51443	51518	.	-	.	ID=gene-C9E96_RS14525;Name=C9E96_RS14525;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS14525;old_locus_tag=C9E96_14890
NZ_PYJX01000159.1	tRNAscan-SE	tRNA	51443	51518	.	-	.	ID=rna-C9E96_RS14525;Parent=gene-C9E96_RS14525;anticodon=(pos:complement(51483..51485));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14525;product=tRNA-Ala
NZ_PYJX01000159.1	tRNAscan-SE	exon	51443	51518	.	-	.	ID=exon-C9E96_RS14525-1;Parent=rna-C9E96_RS14525;anticodon=(pos:complement(51483..51485));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14525;product=tRNA-Ala
NZ_PYJX01000159.1	RefSeq	gene	51561	51636	.	-	.	ID=gene-C9E96_RS14530;Name=C9E96_RS14530;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS14530;old_locus_tag=C9E96_14895
NZ_PYJX01000159.1	tRNAscan-SE	tRNA	51561	51636	.	-	.	ID=rna-C9E96_RS14530;Parent=gene-C9E96_RS14530;anticodon=(pos:complement(51601..51603));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14530;product=tRNA-Ala
NZ_PYJX01000159.1	tRNAscan-SE	exon	51561	51636	.	-	.	ID=exon-C9E96_RS14530-1;Parent=rna-C9E96_RS14530;anticodon=(pos:complement(51601..51603));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14530;product=tRNA-Ala
NZ_PYJX01000159.1	RefSeq	gene	51858	52220	.	+	.	ID=gene-C9E96_RS14535;Name=C9E96_RS14535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14535;old_locus_tag=C9E96_14905
NZ_PYJX01000159.1	Protein Homology	CDS	51858	52220	.	+	0	ID=cds-WP_000472034.1;Parent=gene-C9E96_RS14535;Dbxref=GenBank:WP_000472034.1;Name=WP_000472034.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461352.1;locus_tag=C9E96_RS14535;product=MerR family transcriptional regulator;protein_id=WP_000472034.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	52222	52614	.	+	.	ID=gene-C9E96_RS14540;Name=C9E96_RS14540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14540;old_locus_tag=C9E96_14910
NZ_PYJX01000159.1	Protein Homology	CDS	52222	52614	.	+	0	ID=cds-WP_000826514.1;Parent=gene-C9E96_RS14540;Dbxref=GenBank:WP_000826514.1;Name=WP_000826514.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461353.1;locus_tag=C9E96_RS14540;product=MerR family transcriptional regulator;protein_id=WP_000826514.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	52668	54083	.	-	.	ID=gene-C9E96_RS14545;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=C9E96_RS14545;old_locus_tag=C9E96_14915
NZ_PYJX01000159.1	Protein Homology	CDS	52668	54083	.	-	0	ID=cds-WP_000695623.1;Parent=gene-C9E96_RS14545;Dbxref=GenBank:WP_000695623.1;Name=WP_000695623.1;Ontology_term=GO:0006424,GO:0000166,GO:0004818,GO:0005524;gbkey=CDS;gene=gltX;go_function=nucleotide binding|0000166||IEA,glutamate-tRNA ligase activity|0004818||IEA,ATP binding|0005524||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461354.1;locus_tag=C9E96_RS14545;product=glutamate--tRNA ligase;protein_id=WP_000695623.1;transl_table=11
NZ_PYJX01000159.1	RefSeq	gene	54342	54417	.	+	.	ID=gene-C9E96_RS14550;Name=C9E96_RS14550;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS14550;old_locus_tag=C9E96_14920
NZ_PYJX01000159.1	tRNAscan-SE	tRNA	54342	54417	.	+	.	ID=rna-C9E96_RS14550;Parent=gene-C9E96_RS14550;anticodon=(pos:54375..54377);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14550;product=tRNA-Val
NZ_PYJX01000159.1	tRNAscan-SE	exon	54342	54417	.	+	.	ID=exon-C9E96_RS14550-1;Parent=rna-C9E96_RS14550;anticodon=(pos:54375..54377);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14550;product=tRNA-Val
##sequence-region NZ_PYJX01000123.1 1 10774
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000123.1	RefSeq	region	1	10774	.	+	.	ID=NZ_PYJX01000123.1:1..10774;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000123.1	RefSeq	pseudogene	45	158	.	-	.	ID=gene-C9E96_RS10560;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=pseudogene;locus_tag=C9E96_RS10560;old_locus_tag=C9E96_10795;partial=true;pseudo=true;start_range=.,45
NZ_PYJX01000123.1	Protein Homology	CDS	45	158	.	-	0	ID=cds-C9E96_RS10560;Parent=gene-C9E96_RS10560;Note=late assembly protein%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;gene=rplO;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011095501.1;locus_tag=C9E96_RS10560;partial=true;product=50S ribosomal protein L15;pseudo=true;start_range=.,45;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	162	341	.	-	.	ID=gene-C9E96_RS10565;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=C9E96_RS10565;old_locus_tag=C9E96_10800
NZ_PYJX01000123.1	Protein Homology	CDS	162	341	.	-	0	ID=cds-WP_001140434.1;Parent=gene-C9E96_RS10565;Dbxref=GenBank:WP_001140434.1;Name=WP_001140434.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmD;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012147215.1;locus_tag=C9E96_RS10565;product=50S ribosomal protein L30;protein_id=WP_001140434.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	345	848	.	-	.	ID=gene-C9E96_RS10570;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=C9E96_RS10570;old_locus_tag=C9E96_10805
NZ_PYJX01000123.1	Protein Homology	CDS	345	848	.	-	0	ID=cds-WP_000940121.1;Parent=gene-C9E96_RS10570;Dbxref=GenBank:WP_000940121.1;Name=WP_000940121.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsE;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004106339.1;locus_tag=C9E96_RS10570;product=30S ribosomal protein S5;protein_id=WP_000940121.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	863	1216	.	-	.	ID=gene-C9E96_RS10575;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=C9E96_RS10575;old_locus_tag=C9E96_10810
NZ_PYJX01000123.1	Protein Homology	CDS	863	1216	.	-	0	ID=cds-WP_000358956.1;Parent=gene-C9E96_RS10575;Dbxref=GenBank:WP_000358956.1;Name=WP_000358956.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplR;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005970258.1;locus_tag=C9E96_RS10575;product=50S ribosomal protein L18;protein_id=WP_000358956.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	1226	1759	.	-	.	ID=gene-C9E96_RS10580;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=C9E96_RS10580;old_locus_tag=C9E96_10815
NZ_PYJX01000123.1	Protein Homology	CDS	1226	1759	.	-	0	ID=cds-WP_000091939.1;Parent=gene-C9E96_RS10580;Dbxref=GenBank:WP_000091939.1;Name=WP_000091939.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplF;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003031129.1;locus_tag=C9E96_RS10580;product=50S ribosomal protein L6;protein_id=WP_000091939.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	1772	2164	.	-	.	ID=gene-C9E96_RS10585;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=C9E96_RS10585;old_locus_tag=C9E96_10820
NZ_PYJX01000123.1	Protein Homology	CDS	1772	2164	.	-	0	ID=cds-WP_000062611.1;Parent=gene-C9E96_RS10585;Dbxref=GenBank:WP_000062611.1;Name=WP_000062611.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011148781.1;locus_tag=C9E96_RS10585;product=30S ribosomal protein S8;protein_id=WP_000062611.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	2198	2503	.	-	.	ID=gene-C9E96_RS10590;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=C9E96_RS10590;old_locus_tag=C9E96_10825
NZ_PYJX01000123.1	Protein Homology	CDS	2198	2503	.	-	0	ID=cds-WP_001118932.1;Parent=gene-C9E96_RS10590;Dbxref=GenBank:WP_001118932.1;Name=WP_001118932.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005599304.1;locus_tag=C9E96_RS10590;product=30S ribosomal protein S14;protein_id=WP_001118932.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	2518	3057	.	-	.	ID=gene-C9E96_RS10595;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=C9E96_RS10595;old_locus_tag=C9E96_10830
NZ_PYJX01000123.1	Protein Homology	CDS	2518	3057	.	-	0	ID=cds-WP_001096206.1;Parent=gene-C9E96_RS10595;Dbxref=GenBank:WP_001096206.1;Name=WP_001096206.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001096198.1;locus_tag=C9E96_RS10595;product=50S ribosomal protein L5;protein_id=WP_001096206.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	3072	3386	.	-	.	ID=gene-C9E96_RS10600;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=C9E96_RS10600;old_locus_tag=C9E96_10835
NZ_PYJX01000123.1	Protein Homology	CDS	3072	3386	.	-	0	ID=cds-WP_000729185.1;Parent=gene-C9E96_RS10600;Dbxref=GenBank:WP_000729185.1;Name=WP_000729185.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplX;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000729185.1;locus_tag=C9E96_RS10600;product=50S ribosomal protein L24;protein_id=WP_000729185.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	3397	3768	.	-	.	ID=gene-C9E96_RS10605;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=C9E96_RS10605;old_locus_tag=C9E96_10840
NZ_PYJX01000123.1	Protein Homology	CDS	3397	3768	.	-	0	ID=cds-WP_000613954.1;Parent=gene-C9E96_RS10605;Dbxref=GenBank:WP_000613954.1;Name=WP_000613954.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplN;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1;locus_tag=C9E96_RS10605;product=50S ribosomal protein L14;protein_id=WP_000613954.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	3933	4187	.	-	.	ID=gene-C9E96_RS10610;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=C9E96_RS10610;old_locus_tag=C9E96_10845
NZ_PYJX01000123.1	Protein Homology	CDS	3933	4187	.	-	0	ID=cds-WP_000130101.1;Parent=gene-C9E96_RS10610;Dbxref=GenBank:WP_000130101.1;Name=WP_000130101.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006817275.1;locus_tag=C9E96_RS10610;product=30S ribosomal protein S17;protein_id=WP_000130101.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	4187	4378	.	-	.	ID=gene-C9E96_RS10615;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=C9E96_RS10615;old_locus_tag=C9E96_10850
NZ_PYJX01000123.1	Protein Homology	CDS	4187	4378	.	-	0	ID=cds-WP_000644742.1;Parent=gene-C9E96_RS10615;Dbxref=GenBank:WP_000644742.1;Name=WP_000644742.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000644743.1;locus_tag=C9E96_RS10615;product=50S ribosomal protein L29;protein_id=WP_000644742.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	4378	4788	.	-	.	ID=gene-C9E96_RS10620;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=C9E96_RS10620;old_locus_tag=C9E96_10855
NZ_PYJX01000123.1	Protein Homology	CDS	4378	4788	.	-	0	ID=cds-WP_000941208.1;Parent=gene-C9E96_RS10620;Dbxref=GenBank:WP_000941208.1;Name=WP_000941208.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843;gbkey=CDS;gene=rplP;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017805229.1;locus_tag=C9E96_RS10620;product=50S ribosomal protein L16;protein_id=WP_000941208.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	4801	5502	.	-	.	ID=gene-C9E96_RS10625;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=C9E96_RS10625;old_locus_tag=C9E96_10860
NZ_PYJX01000123.1	Protein Homology	CDS	4801	5502	.	-	0	ID=cds-WP_000529945.1;Parent=gene-C9E96_RS10625;Dbxref=GenBank:WP_000529945.1;Name=WP_000529945.1;Ontology_term=GO:0006412,GO:0003735;gbkey=CDS;gene=rpsC;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742302.1;locus_tag=C9E96_RS10625;product=30S ribosomal protein S3;protein_id=WP_000529945.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	5520	5852	.	-	.	ID=gene-C9E96_RS10630;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=C9E96_RS10630;old_locus_tag=C9E96_10865
NZ_PYJX01000123.1	Protein Homology	CDS	5520	5852	.	-	0	ID=cds-WP_000447529.1;Parent=gene-C9E96_RS10630;Dbxref=GenBank:WP_000447529.1;Name=WP_000447529.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplV;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000447526.1;locus_tag=C9E96_RS10630;product=50S ribosomal protein L22;protein_id=WP_000447529.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	5867	6145	.	-	.	ID=gene-C9E96_RS10635;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=C9E96_RS10635;old_locus_tag=C9E96_10870
NZ_PYJX01000123.1	Protein Homology	CDS	5867	6145	.	-	0	ID=cds-WP_001138115.1;Parent=gene-C9E96_RS10635;Dbxref=GenBank:WP_001138115.1;Name=WP_001138115.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsS;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1;locus_tag=C9E96_RS10635;product=30S ribosomal protein S19;protein_id=WP_001138115.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	6162	6983	.	-	.	ID=gene-C9E96_RS10640;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=C9E96_RS10640;old_locus_tag=C9E96_10875
NZ_PYJX01000123.1	Protein Homology	CDS	6162	6983	.	-	0	ID=cds-WP_000301869.1;Parent=gene-C9E96_RS10640;Dbxref=GenBank:WP_000301869.1;Name=WP_000301869.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0016740,GO:0015934;gbkey=CDS;gene=rplB;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA,transferase activity|0016740||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001738551.1;locus_tag=C9E96_RS10640;product=50S ribosomal protein L2;protein_id=WP_000301869.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	7001	7303	.	-	.	ID=gene-C9E96_RS10645;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=C9E96_RS10645;old_locus_tag=C9E96_10880
NZ_PYJX01000123.1	Protein Homology	CDS	7001	7303	.	-	0	ID=cds-WP_000617546.1;Parent=gene-C9E96_RS10645;Dbxref=GenBank:WP_000617546.1;Name=WP_000617546.1;gbkey=CDS;gene=rplW;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007891652.1;locus_tag=C9E96_RS10645;product=50S ribosomal protein L23;protein_id=WP_000617546.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	7300	7905	.	-	.	ID=gene-C9E96_RS10650;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=C9E96_RS10650;old_locus_tag=C9E96_10885
NZ_PYJX01000123.1	Protein Homology	CDS	7300	7905	.	-	0	ID=cds-WP_000424395.1;Parent=gene-C9E96_RS10650;Dbxref=GenBank:WP_000424395.1;Name=WP_000424395.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010304939.1;locus_tag=C9E96_RS10650;product=50S ribosomal protein L4;protein_id=WP_000424395.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	7916	8545	.	-	.	ID=gene-C9E96_RS10655;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=C9E96_RS10655;old_locus_tag=C9E96_10890
NZ_PYJX01000123.1	Protein Homology	CDS	7916	8545	.	-	0	ID=cds-WP_000579838.1;Parent=gene-C9E96_RS10655;Dbxref=GenBank:WP_000579838.1;Name=WP_000579838.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000579825.1;locus_tag=C9E96_RS10655;product=50S ribosomal protein L3;protein_id=WP_000579838.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	8578	8889	.	-	.	ID=gene-C9E96_RS10660;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=C9E96_RS10660;old_locus_tag=C9E96_10895
NZ_PYJX01000123.1	Protein Homology	CDS	8578	8889	.	-	0	ID=cds-WP_001181005.1;Parent=gene-C9E96_RS10660;Dbxref=GenBank:WP_001181005.1;Name=WP_001181005.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014268624.1;locus_tag=C9E96_RS10660;product=30S ribosomal protein S10;protein_id=WP_001181005.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	9269	9736	.	+	.	ID=gene-C9E96_RS10665;Name=hopD;gbkey=Gene;gene=hopD;gene_biotype=protein_coding;locus_tag=C9E96_RS10665;old_locus_tag=C9E96_10905
NZ_PYJX01000123.1	Protein Homology	CDS	9269	9736	.	+	0	ID=cds-WP_000495848.1;Parent=gene-C9E96_RS10665;Dbxref=GenBank:WP_000495848.1;Name=WP_000495848.1;gbkey=CDS;gene=hopD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462346.1;locus_tag=C9E96_RS10665;product=prepilin peptidase;protein_id=WP_000495848.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	9733	10209	.	-	.	ID=gene-C9E96_RS10670;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=C9E96_RS10670;old_locus_tag=C9E96_10910
NZ_PYJX01000123.1	Protein Homology	CDS	9733	10209	.	-	0	ID=cds-WP_000675530.1;Parent=gene-C9E96_RS10670;Dbxref=GenBank:WP_000675530.1;Name=WP_000675530.1;Ontology_term=GO:0006879,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular iron ion homeostasis|0006879||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462347.1;locus_tag=C9E96_RS10670;product=bacterioferritin;protein_id=WP_000675530.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	10282	10476	.	-	.	ID=gene-C9E96_RS10675;Name=bfd;gbkey=Gene;gene=bfd;gene_biotype=protein_coding;locus_tag=C9E96_RS10675;old_locus_tag=C9E96_10915
NZ_PYJX01000123.1	Protein Homology	CDS	10282	10476	.	-	0	ID=cds-WP_000289082.1;Parent=gene-C9E96_RS10675;Dbxref=GenBank:WP_000289082.1;Name=WP_000289082.1;gbkey=CDS;gene=bfd;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462348.1;locus_tag=C9E96_RS10675;product=bacterioferritin-associated ferredoxin;protein_id=WP_000289082.1;transl_table=11
NZ_PYJX01000123.1	RefSeq	gene	10661	10774	.	-	.	ID=gene-C9E96_RS10680;Name=C9E96_RS10680;end_range=10774,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10680;old_locus_tag=C9E96_10930;partial=true
NZ_PYJX01000123.1	Protein Homology	CDS	10661	10774	.	-	0	ID=cds-WP_000607214.1;Parent=gene-C9E96_RS10680;Dbxref=GenBank:WP_000607214.1;Name=WP_000607214.1;end_range=10774,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=C9E96_RS10680;partial=true;product=elongation factor Tu;protein_id=WP_000607214.1;transl_table=11
##sequence-region NZ_PYJX01000071.1 1 10714
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000071.1	RefSeq	region	1	10714	.	+	.	ID=NZ_PYJX01000071.1:1..10714;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000071.1	RefSeq	gene	1	291	.	-	.	ID=gene-C9E96_RS05970;Name=C9E96_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05970;old_locus_tag=C9E96_06110;partial=true;start_range=.,1
NZ_PYJX01000071.1	Protein Homology	CDS	1	291	.	-	0	ID=cds-WP_135493960.1;Parent=gene-C9E96_RS05970;Dbxref=GenBank:WP_135493960.1;Name=WP_135493960.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462461.1;locus_tag=C9E96_RS05970;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_135493960.1;start_range=.,1;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	293	1060	.	-	.	ID=gene-C9E96_RS05975;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=C9E96_RS05975;old_locus_tag=C9E96_06115
NZ_PYJX01000071.1	Protein Homology	CDS	293	1060	.	-	0	ID=cds-WP_000082083.1;Parent=gene-C9E96_RS05975;Dbxref=GenBank:WP_000082083.1;Name=WP_000082083.1;gbkey=CDS;gene=livG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000084170.1;locus_tag=C9E96_RS05975;product=high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG;protein_id=WP_000082083.1;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	1057	2334	.	-	.	ID=gene-C9E96_RS05980;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=C9E96_RS05980;old_locus_tag=C9E96_06120
NZ_PYJX01000071.1	Protein Homology	CDS	1057	2334	.	-	0	ID=cds-WP_080203891.1;Parent=gene-C9E96_RS05980;Dbxref=GenBank:WP_080203891.1;Name=WP_080203891.1;gbkey=CDS;gene=livM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462463.1;locus_tag=C9E96_RS05980;product=branched chain amino acid ABC transporter permease LivM;protein_id=WP_080203891.1;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	2331	3257	.	-	.	ID=gene-C9E96_RS05985;Name=livH;gbkey=Gene;gene=livH;gene_biotype=protein_coding;locus_tag=C9E96_RS05985;old_locus_tag=C9E96_06125
NZ_PYJX01000071.1	Protein Homology	CDS	2331	3257	.	-	0	ID=cds-WP_000003007.1;Parent=gene-C9E96_RS05985;Dbxref=GenBank:WP_000003007.1;Name=WP_000003007.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=livH;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010436488.1;locus_tag=C9E96_RS05985;product=high-affinity branched-chain amino acid ABC transporter permease LivH;protein_id=WP_000003007.1;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	3317	4426	.	-	.	ID=gene-C9E96_RS05990;Name=livK;gbkey=Gene;gene=livK;gene_biotype=protein_coding;locus_tag=C9E96_RS05990;old_locus_tag=C9E96_06130
NZ_PYJX01000071.1	Protein Homology	CDS	3317	4426	.	-	0	ID=cds-WP_080203892.1;Parent=gene-C9E96_RS05990;Dbxref=GenBank:WP_080203892.1;Name=WP_080203892.1;gbkey=CDS;gene=livK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462465.1;locus_tag=C9E96_RS05990;product=high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK;protein_id=WP_080203892.1;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	4848	5231	.	+	.	ID=gene-C9E96_RS05995;Name=panM;gbkey=Gene;gene=panM;gene_biotype=protein_coding;locus_tag=C9E96_RS05995;old_locus_tag=C9E96_06135
NZ_PYJX01000071.1	Protein Homology	CDS	4848	5231	.	+	0	ID=cds-WP_000778873.1;Parent=gene-C9E96_RS05995;Dbxref=GenBank:WP_000778873.1;Name=WP_000778873.1;Ontology_term=GO:0015940,GO:0031638,GO:0008080;gbkey=CDS;gene=panM;go_function=N-acetyltransferase activity|0008080||IEA;go_process=pantothenate biosynthetic process|0015940||IEA,zymogen activation|0031638||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462466.1;locus_tag=C9E96_RS05995;product=aspartate 1-decarboxylase autocleavage activator PanM;protein_id=WP_000778873.1;transl_table=11
NZ_PYJX01000071.1	RefSeq	pseudogene	5209	5310	.	+	.	ID=gene-C9E96_RS06000;Name=C9E96_RS06000;end_range=5310,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS06000;old_locus_tag=C9E96_06140;partial=true;pseudo=true
NZ_PYJX01000071.1	Protein Homology	CDS	5209	5310	.	+	0	ID=cds-C9E96_RS06000;Parent=gene-C9E96_RS06000;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=5310,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462467.1;locus_tag=C9E96_RS06000;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	5352	6455	.	-	.	ID=gene-C9E96_RS06005;Name=livJ;gbkey=Gene;gene=livJ;gene_biotype=protein_coding;locus_tag=C9E96_RS06005;old_locus_tag=C9E96_06145
NZ_PYJX01000071.1	Protein Homology	CDS	5352	6455	.	-	0	ID=cds-WP_001518632.1;Parent=gene-C9E96_RS06005;Dbxref=GenBank:WP_001518632.1;Name=WP_001518632.1;gbkey=CDS;gene=livJ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026223.1;locus_tag=C9E96_RS06005;product=branched chain amino acid ABC transporter substrate-binding protein LivJ;protein_id=WP_001518632.1;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	6777	7631	.	-	.	ID=gene-C9E96_RS06010;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=C9E96_RS06010;old_locus_tag=C9E96_06150
NZ_PYJX01000071.1	Protein Homology	CDS	6777	7631	.	-	0	ID=cds-WP_000159621.1;Parent=gene-C9E96_RS06010;Dbxref=GenBank:WP_000159621.1;Name=WP_000159621.1;Ontology_term=GO:0006352,GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoH;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462469.1;locus_tag=C9E96_RS06010;product=RNA polymerase sigma factor RpoH;protein_id=WP_000159621.1;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	7877	8932	.	-	.	ID=gene-C9E96_RS06015;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=C9E96_RS06015;old_locus_tag=C9E96_06155
NZ_PYJX01000071.1	Protein Homology	CDS	7877	8932	.	-	0	ID=cds-WP_001081707.1;Parent=gene-C9E96_RS06015;Dbxref=GenBank:WP_001081707.1;Name=WP_001081707.1;Ontology_term=GO:0000910;gbkey=CDS;gene=ftsX;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462470.1;locus_tag=C9E96_RS06015;product=permease-like cell division protein FtsX;protein_id=WP_001081707.1;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	8925	9593	.	-	.	ID=gene-C9E96_RS06020;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=C9E96_RS06020;old_locus_tag=C9E96_06160
NZ_PYJX01000071.1	Protein Homology	CDS	8925	9593	.	-	0	ID=cds-WP_000617729.1;Parent=gene-C9E96_RS06020;Dbxref=GenBank:WP_000617729.1;Name=WP_000617729.1;Ontology_term=GO:0000910,GO:0005524;gbkey=CDS;gene=ftsE;go_function=ATP binding|0005524||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462471.1;locus_tag=C9E96_RS06020;product=cell division ATP-binding protein FtsE;protein_id=WP_000617729.1;transl_table=11
NZ_PYJX01000071.1	RefSeq	gene	9596	10714	.	-	.	ID=gene-C9E96_RS06025;Name=ftsY;end_range=10714,.;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=C9E96_RS06025;old_locus_tag=C9E96_06165;partial=true
NZ_PYJX01000071.1	Protein Homology	CDS	9596	10714	.	-	0	ID=cds-WP_135493962.1;Parent=gene-C9E96_RS06025;Dbxref=GenBank:WP_135493962.1;Name=WP_135493962.1;Ontology_term=GO:0006614,GO:0009306,GO:0003924,GO:0005047;end_range=10714,.;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=SRP-dependent cotranslational protein targeting to membrane|0006614||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462472.1;locus_tag=C9E96_RS06025;partial=true;product=signal recognition particle-docking protein FtsY;protein_id=WP_135493962.1;transl_table=11
##sequence-region NZ_PYJX01000184.1 1 10520
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000184.1	RefSeq	region	1	10520	.	+	.	ID=NZ_PYJX01000184.1:1..10520;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000184.1	RefSeq	gene	1	911	.	-	.	ID=gene-C9E96_RS17380;Name=C9E96_RS17380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17380;old_locus_tag=C9E96_17830;partial=true;start_range=.,1
NZ_PYJX01000184.1	Protein Homology	CDS	1	911	.	-	0	ID=cds-WP_135494447.1;Parent=gene-C9E96_RS17380;Dbxref=GenBank:WP_135494447.1;Name=WP_135494447.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463297.1;locus_tag=C9E96_RS17380;partial=true;product=sugar phosphate isomerase/epimerase family protein;protein_id=WP_135494447.1;start_range=.,1;transl_table=11
NZ_PYJX01000184.1	RefSeq	gene	964	1779	.	-	.	ID=gene-C9E96_RS17385;Name=iolI2;gbkey=Gene;gene=iolI2;gene_biotype=protein_coding;locus_tag=C9E96_RS17385;old_locus_tag=C9E96_17835
NZ_PYJX01000184.1	Protein Homology	CDS	964	1779	.	-	0	ID=cds-WP_001019386.1;Parent=gene-C9E96_RS17385;Dbxref=GenBank:WP_001019386.1;Name=WP_001019386.1;gbkey=CDS;gene=iolI2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463296.1;locus_tag=C9E96_RS17385;product=2-keto-myo-inositol isomerase IolI2;protein_id=WP_001019386.1;transl_table=11
NZ_PYJX01000184.1	RefSeq	gene	1940	3166	.	-	.	ID=gene-C9E96_RS17390;Name=C9E96_RS17390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17390;old_locus_tag=C9E96_17840
NZ_PYJX01000184.1	Protein Homology	CDS	1940	3166	.	-	0	ID=cds-WP_000661780.1;Parent=gene-C9E96_RS17390;Dbxref=GenBank:WP_000661780.1;Name=WP_000661780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463295.1;locus_tag=C9E96_RS17390;product=MFS transporter;protein_id=WP_000661780.1;transl_table=11
NZ_PYJX01000184.1	RefSeq	gene	3239	4261	.	-	.	ID=gene-C9E96_RS17395;Name=iolG2;gbkey=Gene;gene=iolG2;gene_biotype=protein_coding;locus_tag=C9E96_RS17395;old_locus_tag=C9E96_17845
NZ_PYJX01000184.1	Protein Homology	CDS	3239	4261	.	-	0	ID=cds-WP_000736098.1;Parent=gene-C9E96_RS17395;Dbxref=GenBank:WP_000736098.1;Name=WP_000736098.1;gbkey=CDS;gene=iolG2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463294.1;locus_tag=C9E96_RS17395;product=D-chiro-inositol-2-dehydrogenase IolG2;protein_id=WP_000736098.1;transl_table=11
NZ_PYJX01000184.1	RefSeq	gene	4442	6382	.	-	.	ID=gene-C9E96_RS17400;Name=iolD;gbkey=Gene;gene=iolD;gene_biotype=protein_coding;locus_tag=C9E96_RS17400;old_locus_tag=C9E96_17850
NZ_PYJX01000184.1	Protein Homology	CDS	4442	6382	.	-	0	ID=cds-WP_135369814.1;Parent=gene-C9E96_RS17400;Dbxref=GenBank:WP_135369814.1;Name=WP_135369814.1;Ontology_term=GO:0019310,GO:0016823,GO:0030976;gbkey=CDS;gene=iolD;go_function=hydrolase activity%2C acting on acid carbon-carbon bonds%2C in ketonic substances|0016823||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=inositol catabolic process|0019310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453702.1;locus_tag=C9E96_RS17400;product=3D-(3%2C5/4)-trihydroxycyclohexane-1%2C2-dione acylhydrolase (decyclizing);protein_id=WP_135369814.1;transl_table=11
NZ_PYJX01000184.1	RefSeq	gene	6800	8737	.	+	.	ID=gene-C9E96_RS17405;Name=C9E96_RS17405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17405;old_locus_tag=C9E96_17855
NZ_PYJX01000184.1	Protein Homology	CDS	6800	8737	.	+	0	ID=cds-WP_014343940.1;Parent=gene-C9E96_RS17405;Dbxref=GenBank:WP_014343940.1;Name=WP_014343940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453701.1;locus_tag=C9E96_RS17405;product=bifunctional 5-dehydro-2-deoxygluconokinase/5-dehydro-2-deoxyphosphogluconate aldolase;protein_id=WP_014343940.1;transl_table=11
NZ_PYJX01000184.1	RefSeq	gene	8798	9964	.	+	.	ID=gene-C9E96_RS17410;Name=C9E96_RS17410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17410;old_locus_tag=C9E96_17860
NZ_PYJX01000184.1	Protein Homology	CDS	8798	9964	.	+	0	ID=cds-WP_023993581.1;Parent=gene-C9E96_RS17410;Dbxref=GenBank:WP_023993581.1;Name=WP_023993581.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463289.1;locus_tag=C9E96_RS17410;product=MFS transporter;protein_id=WP_023993581.1;transl_table=11
NZ_PYJX01000184.1	RefSeq	gene	9969	10520	.	-	.	ID=gene-C9E96_RS17415;Name=iolI1;end_range=10520,.;gbkey=Gene;gene=iolI1;gene_biotype=protein_coding;locus_tag=C9E96_RS17415;old_locus_tag=C9E96_17865;partial=true
NZ_PYJX01000184.1	Protein Homology	CDS	9969	10520	.	-	0	ID=cds-WP_135494449.1;Parent=gene-C9E96_RS17415;Dbxref=GenBank:WP_135494449.1;Name=WP_135494449.1;end_range=10520,.;gbkey=CDS;gene=iolI1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463288.1;locus_tag=C9E96_RS17415;partial=true;product=2-keto-myo-inositol isomerase IolI1;protein_id=WP_135494449.1;transl_table=11
##sequence-region NZ_PYJX01000158.1 1 10206
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000158.1	RefSeq	region	1	10206	.	+	.	ID=NZ_PYJX01000158.1:1..10206;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000158.1	RefSeq	gene	1	450	.	+	.	ID=gene-C9E96_RS14205;Name=C9E96_RS14205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14205;old_locus_tag=C9E96_14560;partial=true;start_range=.,1
NZ_PYJX01000158.1	Protein Homology	CDS	1	450	.	+	0	ID=cds-WP_135494320.1;Parent=gene-C9E96_RS14205;Dbxref=GenBank:WP_135494320.1;Name=WP_135494320.1;Ontology_term=GO:0009058,GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461729.1;locus_tag=C9E96_RS14205;partial=true;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_135494320.1;start_range=.,1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	534	860	.	-	.	ID=gene-C9E96_RS14210;Name=C9E96_RS14210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14210;old_locus_tag=C9E96_14565
NZ_PYJX01000158.1	Protein Homology	CDS	534	860	.	-	0	ID=cds-WP_080204037.1;Parent=gene-C9E96_RS14210;Dbxref=GenBank:WP_080204037.1;Name=WP_080204037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528627.1;locus_tag=C9E96_RS14210;product=DUF883 domain-containing protein;protein_id=WP_080204037.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	1022	1372	.	+	.	ID=gene-C9E96_RS14215;Name=C9E96_RS14215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14215;old_locus_tag=C9E96_14570
NZ_PYJX01000158.1	Protein Homology	CDS	1022	1372	.	+	0	ID=cds-WP_000281304.1;Parent=gene-C9E96_RS14215;Dbxref=GenBank:WP_000281304.1;Name=WP_000281304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461727.1;locus_tag=C9E96_RS14215;product=DUF2002 family protein;protein_id=WP_000281304.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	1407	1856	.	-	.	ID=gene-C9E96_RS14220;Name=alaE;gbkey=Gene;gene=alaE;gene_biotype=protein_coding;locus_tag=C9E96_RS14220;old_locus_tag=C9E96_14575
NZ_PYJX01000158.1	Protein Homology	CDS	1407	1856	.	-	0	ID=cds-WP_000492669.1;Parent=gene-C9E96_RS14220;Dbxref=GenBank:WP_000492669.1;Name=WP_000492669.1;gbkey=CDS;gene=alaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461726.1;locus_tag=C9E96_RS14220;product=L-alanine exporter AlaE;protein_id=WP_000492669.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	2755	3156	.	+	.	ID=gene-C9E96_RS14230;Name=stpA;gbkey=Gene;gene=stpA;gene_biotype=protein_coding;locus_tag=C9E96_RS14230;old_locus_tag=C9E96_14590
NZ_PYJX01000158.1	Protein Homology	CDS	2755	3156	.	+	0	ID=cds-WP_001051100.1;Parent=gene-C9E96_RS14230;Dbxref=GenBank:WP_001051100.1;Name=WP_001051100.1;gbkey=CDS;gene=stpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461725.1;locus_tag=C9E96_RS14230;product=DNA-binding protein StpA;protein_id=WP_001051100.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	3246	3425	.	-	.	ID=gene-C9E96_RS14235;Name=C9E96_RS14235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14235;old_locus_tag=C9E96_14595
NZ_PYJX01000158.1	Protein Homology	CDS	3246	3425	.	-	0	ID=cds-WP_023238336.1;Parent=gene-C9E96_RS14235;Dbxref=GenBank:WP_023238336.1;Name=WP_023238336.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000494935.1;locus_tag=C9E96_RS14235;product=hypothetical protein;protein_id=WP_023238336.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	3504	4031	.	-	.	ID=gene-C9E96_RS14240;Name=C9E96_RS14240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14240;old_locus_tag=C9E96_14600
NZ_PYJX01000158.1	Protein Homology	CDS	3504	4031	.	-	0	ID=cds-WP_080204038.1;Parent=gene-C9E96_RS14240;Dbxref=GenBank:WP_080204038.1;Name=WP_080204038.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461724.1;locus_tag=C9E96_RS14240;product=rhodanese family protein;protein_id=WP_080204038.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	4041	4340	.	-	.	ID=gene-C9E96_RS14245;Name=C9E96_RS14245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14245;old_locus_tag=C9E96_14605
NZ_PYJX01000158.1	Protein Homology	CDS	4041	4340	.	-	0	ID=cds-WP_000137432.1;Parent=gene-C9E96_RS14245;Dbxref=GenBank:WP_000137432.1;Name=WP_000137432.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461723.1;locus_tag=C9E96_RS14245;product=ArsR/SmtB family transcription factor;protein_id=WP_000137432.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	4523	4681	.	+	.	ID=gene-C9E96_RS14250;Name=C9E96_RS14250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14250;old_locus_tag=C9E96_14610
NZ_PYJX01000158.1	Protein Homology	CDS	4523	4681	.	+	0	ID=cds-WP_000508175.1;Parent=gene-C9E96_RS14250;Dbxref=GenBank:WP_000508175.1;Name=WP_000508175.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461722.1;locus_tag=C9E96_RS14250;product=YqaE/Pmp3 family membrane protein;protein_id=WP_000508175.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	4781	5230	.	+	.	ID=gene-C9E96_RS14260;Name=lysM;gbkey=Gene;gene=lysM;gene_biotype=protein_coding;locus_tag=C9E96_RS14260;old_locus_tag=C9E96_14620
NZ_PYJX01000158.1	Protein Homology	CDS	4781	5230	.	+	0	ID=cds-WP_135494322.1;Parent=gene-C9E96_RS14260;Dbxref=GenBank:WP_135494322.1;Name=WP_135494322.1;gbkey=CDS;gene=lysM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461721.1;locus_tag=C9E96_RS14260;product=peptidoglycan-binding protein LysM;protein_id=WP_135494322.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	5252	5929	.	-	.	ID=gene-C9E96_RS14265;Name=csiR;gbkey=Gene;gene=csiR;gene_biotype=protein_coding;locus_tag=C9E96_RS14265;old_locus_tag=C9E96_14625
NZ_PYJX01000158.1	Protein Homology	CDS	5252	5929	.	-	0	ID=cds-WP_000126152.1;Parent=gene-C9E96_RS14265;Dbxref=GenBank:WP_000126152.1;Name=WP_000126152.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=csiR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461720.1;locus_tag=C9E96_RS14265;product=DNA-binding transcriptional regulator CsiR;protein_id=WP_000126152.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	5971	7371	.	-	.	ID=gene-C9E96_RS14270;Name=gabP;gbkey=Gene;gene=gabP;gene_biotype=protein_coding;locus_tag=C9E96_RS14270;old_locus_tag=C9E96_14630
NZ_PYJX01000158.1	Protein Homology	CDS	5971	7371	.	-	0	ID=cds-WP_020899122.1;Parent=gene-C9E96_RS14270;Dbxref=GenBank:WP_020899122.1;Name=WP_020899122.1;Ontology_term=GO:0006865,GO:0015185,GO:0016020;gbkey=CDS;gene=gabP;go_component=membrane|0016020||IEA;go_function=gamma-aminobutyric acid transmembrane transporter activity|0015185||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461719.1;locus_tag=C9E96_RS14270;product=GABA permease;protein_id=WP_020899122.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	gene	7501	8784	.	-	.	ID=gene-C9E96_RS14275;Name=gabT;gbkey=Gene;gene=gabT;gene_biotype=protein_coding;locus_tag=C9E96_RS14275;old_locus_tag=C9E96_14635
NZ_PYJX01000158.1	Protein Homology	CDS	7501	8784	.	-	0	ID=cds-WP_001650446.1;Parent=gene-C9E96_RS14275;Dbxref=GenBank:WP_001650446.1;Name=WP_001650446.1;Ontology_term=GO:0009448,GO:0030170;gbkey=CDS;gene=gabT;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=gamma-aminobutyric acid metabolic process|0009448||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461718.1;locus_tag=C9E96_RS14275;product=4-aminobutyrate--2-oxoglutarate transaminase;protein_id=WP_001650446.1;transl_table=11
NZ_PYJX01000158.1	RefSeq	pseudogene	8799	10133	.	-	.	ID=gene-C9E96_RS14280;Name=gabD;end_range=10133,.;gbkey=Gene;gene=gabD;gene_biotype=pseudogene;locus_tag=C9E96_RS14280;old_locus_tag=C9E96_14640;partial=true;pseudo=true
NZ_PYJX01000158.1	Protein Homology	CDS	8799	10133	.	-	0	ID=cds-C9E96_RS14280;Parent=gene-C9E96_RS14280;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009450,GO:0009013;end_range=10133,.;gbkey=CDS;gene=gabD;go_function=succinate-semialdehyde dehydrogenase [NAD(P)+] activity|0009013||IEA;go_process=gamma-aminobutyric acid catabolic process|0009450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461717.1;locus_tag=C9E96_RS14280;partial=true;product=NADP-dependent succinate-semialdehyde dehydrogenase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000101.1 1 9920
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000101.1	RefSeq	region	1	9920	.	+	.	ID=NZ_PYJX01000101.1:1..9920;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000101.1	RefSeq	pseudogene	1	290	.	+	.	ID=gene-C9E96_RS08765;Name=C9E96_RS08765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS08765;old_locus_tag=C9E96_08955;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000101.1	Protein Homology	CDS	1	290	.	+	2	ID=cds-C9E96_RS08765;Parent=gene-C9E96_RS08765;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459284.1;locus_tag=C9E96_RS08765;partial=true;product=TagF domain-containing protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000101.1	RefSeq	gene	333	803	.	+	.	ID=gene-C9E96_RS08770;Name=C9E96_RS08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08770;old_locus_tag=C9E96_08960
NZ_PYJX01000101.1	Protein Homology	CDS	333	803	.	+	0	ID=cds-WP_000528843.1;Parent=gene-C9E96_RS08770;Dbxref=GenBank:WP_000528843.1;Name=WP_000528843.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000528842.1;locus_tag=C9E96_RS08770;product=glucosaminidase domain-containing protein;protein_id=WP_000528843.1;transl_table=11
NZ_PYJX01000101.1	RefSeq	gene	788	1249	.	+	.	ID=gene-C9E96_RS08775;Name=C9E96_RS08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08775;old_locus_tag=C9E96_08965
NZ_PYJX01000101.1	Protein Homology	CDS	788	1249	.	+	0	ID=cds-WP_001674711.1;Parent=gene-C9E96_RS08775;Dbxref=GenBank:WP_001674711.1;Name=WP_001674711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001670388.1;locus_tag=C9E96_RS08775;product=hypothetical protein;protein_id=WP_001674711.1;transl_table=11
NZ_PYJX01000101.1	RefSeq	pseudogene	1258	1386	.	+	.	ID=gene-C9E96_RS24030;Name=C9E96_RS24030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24030;partial=true;pseudo=true;start_range=.,1258
NZ_PYJX01000101.1	Protein Homology	CDS	1258	1386	.	+	0	ID=cds-C9E96_RS24030;Parent=gene-C9E96_RS24030;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001254123.1;locus_tag=C9E96_RS24030;partial=true;product=TagF domain-containing protein;pseudo=true;start_range=.,1258;transl_table=11
NZ_PYJX01000101.1	RefSeq	gene	1436	2167	.	+	.	ID=gene-C9E96_RS08780;Name=C9E96_RS08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08780;old_locus_tag=C9E96_08970
NZ_PYJX01000101.1	Protein Homology	CDS	1436	2167	.	+	0	ID=cds-WP_000040883.1;Parent=gene-C9E96_RS08780;Dbxref=GenBank:WP_000040883.1;Name=WP_000040883.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000040883.1;locus_tag=C9E96_RS08780;product=hypothetical protein;protein_id=WP_000040883.1;transl_table=11
NZ_PYJX01000101.1	RefSeq	gene	2164	2598	.	+	.	ID=gene-C9E96_RS08785;Name=C9E96_RS08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08785;old_locus_tag=C9E96_08975
NZ_PYJX01000101.1	Protein Homology	CDS	2164	2598	.	+	0	ID=cds-WP_000616540.1;Parent=gene-C9E96_RS08785;Dbxref=GenBank:WP_000616540.1;Name=WP_000616540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000616626.1;locus_tag=C9E96_RS08785;product=hypothetical protein;protein_id=WP_000616540.1;transl_table=11
NZ_PYJX01000101.1	RefSeq	pseudogene	2798	2924	.	+	.	ID=gene-C9E96_RS24515;Name=C9E96_RS24515;end_range=2924,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24515;partial=true;pseudo=true;start_range=.,2798
NZ_PYJX01000101.1	Protein Homology	CDS	2798	2924	.	+	0	ID=cds-C9E96_RS24515;Parent=gene-C9E96_RS24515;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2924,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459287.1;locus_tag=C9E96_RS24515;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2798;transl_table=11
NZ_PYJX01000101.1	RefSeq	gene	2960	3094	.	+	.	ID=gene-C9E96_RS24380;Name=C9E96_RS24380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24380
NZ_PYJX01000101.1	GeneMarkS-2+	CDS	2960	3094	.	+	0	ID=cds-WP_254895444.1;Parent=gene-C9E96_RS24380;Dbxref=GenBank:WP_254895444.1;Name=WP_254895444.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS24380;product=hypothetical protein;protein_id=WP_254895444.1;transl_table=11
NZ_PYJX01000101.1	RefSeq	gene	3629	5878	.	+	.	ID=gene-C9E96_RS08795;Name=C9E96_RS08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08795;old_locus_tag=C9E96_08985
NZ_PYJX01000101.1	Protein Homology	CDS	3629	5878	.	+	0	ID=cds-WP_135369868.1;Parent=gene-C9E96_RS08795;Dbxref=GenBank:WP_135369868.1;Name=WP_135369868.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505545.1;locus_tag=C9E96_RS08795;product=type VI secretion system Vgr family protein;protein_id=WP_135369868.1;transl_table=11
NZ_PYJX01000101.1	RefSeq	gene	5938	6396	.	+	.	ID=gene-C9E96_RS08800;Name=C9E96_RS08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08800;old_locus_tag=C9E96_08990
NZ_PYJX01000101.1	Protein Homology	CDS	5938	6396	.	+	0	ID=cds-WP_000186513.1;Parent=gene-C9E96_RS08800;Dbxref=GenBank:WP_000186513.1;Name=WP_000186513.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000186512.1;locus_tag=C9E96_RS08800;product=DcrB-related protein;protein_id=WP_000186513.1;transl_table=11
NZ_PYJX01000101.1	RefSeq	gene	6412	9920	.	+	.	ID=gene-C9E96_RS23940;Name=C9E96_RS23940;end_range=9920,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23940;partial=true
NZ_PYJX01000101.1	Protein Homology	CDS	6412	9920	.	+	0	ID=cds-WP_167852885.1;Parent=gene-C9E96_RS23940;Dbxref=GenBank:WP_167852885.1;Name=WP_167852885.1;end_range=9920,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001529574.1;locus_tag=C9E96_RS23940;partial=true;product=DUF6531 domain-containing protein;protein_id=WP_167852885.1;transl_table=11
##sequence-region NZ_PYJX01000058.1 1 9772
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000058.1	RefSeq	region	1	9772	.	+	.	ID=NZ_PYJX01000058.1:1..9772;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000058.1	RefSeq	gene	1	105	.	+	.	ID=gene-C9E96_RS04945;Name=C9E96_RS04945;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS04945;old_locus_tag=C9E96_05060;partial=true;start_range=.,1
NZ_PYJX01000058.1	cmsearch	rRNA	1	105	.	+	.	ID=rna-C9E96_RS04945;Parent=gene-C9E96_RS04945;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS04945;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000058.1	cmsearch	exon	1	105	.	+	.	ID=exon-C9E96_RS04945-1;Parent=rna-C9E96_RS04945;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS04945;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000058.1	RefSeq	gene	304	419	.	+	.	ID=gene-C9E96_RS04950;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9E96_RS04950;old_locus_tag=C9E96_05065
NZ_PYJX01000058.1	cmsearch	rRNA	304	419	.	+	.	ID=rna-C9E96_RS04950;Parent=gene-C9E96_RS04950;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS04950;product=5S ribosomal RNA
NZ_PYJX01000058.1	cmsearch	exon	304	419	.	+	.	ID=exon-C9E96_RS04950-1;Parent=rna-C9E96_RS04950;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS04950;product=5S ribosomal RNA
NZ_PYJX01000058.1	RefSeq	gene	715	1152	.	-	.	ID=gene-C9E96_RS04955;Name=C9E96_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04955;old_locus_tag=C9E96_05070
NZ_PYJX01000058.1	Protein Homology	CDS	715	1152	.	-	0	ID=cds-WP_001631763.1;Parent=gene-C9E96_RS04955;Dbxref=GenBank:WP_001631763.1;Name=WP_001631763.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463046.1;locus_tag=C9E96_RS04955;product=acetyltransferase;protein_id=WP_001631763.1;transl_table=11
NZ_PYJX01000058.1	RefSeq	gene	1309	2238	.	+	.	ID=gene-C9E96_RS04960;Name=metA;gbkey=Gene;gene=metA;gene_biotype=protein_coding;locus_tag=C9E96_RS04960;old_locus_tag=C9E96_05075
NZ_PYJX01000058.1	Protein Homology	CDS	1309	2238	.	+	0	ID=cds-WP_001122767.1;Parent=gene-C9E96_RS04960;Dbxref=GenBank:WP_001122767.1;Name=WP_001122767.1;Ontology_term=GO:0019281,GO:0008899,GO:0005737;gbkey=CDS;gene=metA;go_component=cytoplasm|0005737||IEA;go_function=homoserine O-succinyltransferase activity|0008899||IEA;go_process=L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine|0019281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132837.1;locus_tag=C9E96_RS04960;product=homoserine O-acetyltransferase MetA;protein_id=WP_001122767.1;transl_table=11
NZ_PYJX01000058.1	RefSeq	gene	2507	4108	.	+	.	ID=gene-C9E96_RS04965;Name=aceB;gbkey=Gene;gene=aceB;gene_biotype=protein_coding;locus_tag=C9E96_RS04965;old_locus_tag=C9E96_05080
NZ_PYJX01000058.1	Protein Homology	CDS	2507	4108	.	+	0	ID=cds-WP_023204793.1;Parent=gene-C9E96_RS04965;Dbxref=GenBank:WP_023204793.1;Name=WP_023204793.1;Ontology_term=GO:0006097,GO:0004474;gbkey=CDS;gene=aceB;go_function=malate synthase activity|0004474||IEA;go_process=glyoxylate cycle|0006097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463048.1;locus_tag=C9E96_RS04965;product=malate synthase A;protein_id=WP_023204793.1;transl_table=11
NZ_PYJX01000058.1	RefSeq	gene	4140	5444	.	+	.	ID=gene-C9E96_RS04970;Name=aceA;gbkey=Gene;gene=aceA;gene_biotype=protein_coding;locus_tag=C9E96_RS04970;old_locus_tag=C9E96_05085
NZ_PYJX01000058.1	Protein Homology	CDS	4140	5444	.	+	0	ID=cds-WP_000857878.1;Parent=gene-C9E96_RS04970;Dbxref=GenBank:WP_000857878.1;Name=WP_000857878.1;Ontology_term=GO:0019752,GO:0004451;gbkey=CDS;gene=aceA;go_function=isocitrate lyase activity|0004451||IEA;go_process=carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463049.1;locus_tag=C9E96_RS04970;product=isocitrate lyase;protein_id=WP_000857878.1;transl_table=11
NZ_PYJX01000058.1	RefSeq	gene	5546	7297	.	+	.	ID=gene-C9E96_RS04975;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=protein_coding;locus_tag=C9E96_RS04975;old_locus_tag=C9E96_05090
NZ_PYJX01000058.1	Protein Homology	CDS	5546	7297	.	+	0	ID=cds-WP_001137275.1;Parent=gene-C9E96_RS04975;Dbxref=GenBank:WP_001137275.1;Name=WP_001137275.1;Ontology_term=GO:0006006,GO:0008772,GO:0016791;gbkey=CDS;gene=aceK;go_function=[isocitrate dehydrogenase (NADP+)] kinase activity|0008772||IEA,phosphatase activity|0016791||IEA;go_process=glucose metabolic process|0006006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463050.1;locus_tag=C9E96_RS04975;product=bifunctional isocitrate dehydrogenase kinase/phosphatase;protein_id=WP_001137275.1;transl_table=11
NZ_PYJX01000058.1	RefSeq	gene	7261	7668	.	-	.	ID=gene-C9E96_RS04980;Name=C9E96_RS04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04980;old_locus_tag=C9E96_05095
NZ_PYJX01000058.1	Protein Homology	CDS	7261	7668	.	-	0	ID=cds-WP_077677840.1;Parent=gene-C9E96_RS04980;Dbxref=GenBank:WP_077677840.1;Name=WP_077677840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463051.1;locus_tag=C9E96_RS04980;product=ASCH domain-containing protein;protein_id=WP_077677840.1;transl_table=11
NZ_PYJX01000058.1	RefSeq	gene	7679	8503	.	-	.	ID=gene-C9E96_RS04985;Name=iclR;gbkey=Gene;gene=iclR;gene_biotype=protein_coding;locus_tag=C9E96_RS04985;old_locus_tag=C9E96_05100
NZ_PYJX01000058.1	Protein Homology	CDS	7679	8503	.	-	0	ID=cds-WP_000226434.1;Parent=gene-C9E96_RS04985;Dbxref=GenBank:WP_000226434.1;Name=WP_000226434.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=iclR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463052.1;locus_tag=C9E96_RS04985;product=glyoxylate bypass operon transcriptional repressor IclR;protein_id=WP_000226434.1;transl_table=11
NZ_PYJX01000058.1	RefSeq	gene	8807	9772	.	+	.	ID=gene-C9E96_RS04990;Name=C9E96_RS04990;end_range=9772,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04990;old_locus_tag=C9E96_05105;partial=true
NZ_PYJX01000058.1	Protein Homology	CDS	8807	9772	.	+	0	ID=cds-WP_210114518.1;Parent=gene-C9E96_RS04990;Dbxref=GenBank:WP_210114518.1;Name=WP_210114518.1;end_range=9772,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312964.1;locus_tag=C9E96_RS04990;partial=true;product=homocysteine S-methyltransferase family protein;protein_id=WP_210114518.1;transl_table=11
##sequence-region NZ_PYJX01000130.1 1 9567
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000130.1	RefSeq	region	1	9567	.	+	.	ID=NZ_PYJX01000130.1:1..9567;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000130.1	RefSeq	gene	1	191	.	+	.	ID=gene-C9E96_RS24040;Name=C9E96_RS24040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24040;partial=true;start_range=.,1
NZ_PYJX01000130.1	GeneMarkS-2+	CDS	1	191	.	+	2	ID=cds-WP_210114525.1;Parent=gene-C9E96_RS24040;Dbxref=GenBank:WP_210114525.1;Name=WP_210114525.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS24040;partial=true;product=hypothetical protein;protein_id=WP_210114525.1;start_range=.,1;transl_table=11
NZ_PYJX01000130.1	RefSeq	gene	169	1509	.	+	.	ID=gene-C9E96_RS10975;Name=C9E96_RS10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10975;old_locus_tag=C9E96_11225
NZ_PYJX01000130.1	Protein Homology	CDS	169	1509	.	+	0	ID=cds-WP_001670709.1;Parent=gene-C9E96_RS10975;Dbxref=GenBank:WP_001670709.1;Name=WP_001670709.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459084.1;locus_tag=C9E96_RS10975;product=MFS transporter;protein_id=WP_001670709.1;transl_table=11
NZ_PYJX01000130.1	RefSeq	gene	1598	1828	.	+	.	ID=gene-C9E96_RS10980;Name=C9E96_RS10980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10980;old_locus_tag=C9E96_11230
NZ_PYJX01000130.1	Protein Homology	CDS	1598	1828	.	+	0	ID=cds-WP_001172089.1;Parent=gene-C9E96_RS10980;Dbxref=GenBank:WP_001172089.1;Name=WP_001172089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459085.1;locus_tag=C9E96_RS10980;product=YgdI/YgdR family lipoprotein;protein_id=WP_001172089.1;transl_table=11
NZ_PYJX01000130.1	RefSeq	gene	2128	2544	.	+	.	ID=gene-C9E96_RS10985;Name=C9E96_RS10985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10985;old_locus_tag=C9E96_11235
NZ_PYJX01000130.1	Protein Homology	CDS	2128	2544	.	+	0	ID=cds-WP_161460226.1;Parent=gene-C9E96_RS10985;Dbxref=GenBank:WP_161460226.1;Name=WP_161460226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459086.1;locus_tag=C9E96_RS10985;product=hypothetical protein;protein_id=WP_161460226.1;transl_table=11
NZ_PYJX01000130.1	RefSeq	gene	2768	3058	.	-	.	ID=gene-C9E96_RS10990;Name=srfN;gbkey=Gene;gene=srfN;gene_biotype=protein_coding;locus_tag=C9E96_RS10990;old_locus_tag=C9E96_11240
NZ_PYJX01000130.1	Protein Homology	CDS	2768	3058	.	-	0	ID=cds-WP_000745961.1;Parent=gene-C9E96_RS10990;Dbxref=GenBank:WP_000745961.1;Name=WP_000745961.1;gbkey=CDS;gene=srfN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459087.1;locus_tag=C9E96_RS10990;product=DUF1471 family virulence protein SrfN;protein_id=WP_000745961.1;transl_table=11
NZ_PYJX01000130.1	RefSeq	gene	3956	5845	.	+	.	ID=gene-C9E96_RS10995;Name=C9E96_RS10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10995;old_locus_tag=C9E96_11250
NZ_PYJX01000130.1	Protein Homology	CDS	3956	5845	.	+	0	ID=cds-WP_000066315.1;Parent=gene-C9E96_RS10995;Dbxref=GenBank:WP_000066315.1;Name=WP_000066315.1;Ontology_term=GO:0008484;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459089.1;locus_tag=C9E96_RS10995;product=sulfatase-like hydrolase/transferase;protein_id=WP_000066315.1;transl_table=11
NZ_PYJX01000130.1	RefSeq	pseudogene	6197	6277	.	-	.	ID=gene-C9E96_RS24235;Name=C9E96_RS24235;end_range=6277,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24235;old_locus_tag=C9E96_11260;partial=true;pseudo=true
NZ_PYJX01000130.1	Protein Homology	CDS	6197	6277	.	-	0	ID=cds-C9E96_RS24235;Parent=gene-C9E96_RS24235;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=6277,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459075.1;locus_tag=C9E96_RS24235;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000130.1	RefSeq	gene	6399	6929	.	+	.	ID=gene-C9E96_RS11000;Name=kefF;gbkey=Gene;gene=kefF;gene_biotype=protein_coding;locus_tag=C9E96_RS11000;old_locus_tag=C9E96_11265
NZ_PYJX01000130.1	Protein Homology	CDS	6399	6929	.	+	0	ID=cds-WP_080204103.1;Parent=gene-C9E96_RS11000;Dbxref=GenBank:WP_080204103.1;Name=WP_080204103.1;Ontology_term=GO:0006813;gbkey=CDS;gene=kefF;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459090.1;locus_tag=C9E96_RS11000;product=glutathione-regulated potassium-efflux system oxidoreductase KefF;protein_id=WP_080204103.1;transl_table=11
NZ_PYJX01000130.1	RefSeq	gene	6922	8784	.	+	.	ID=gene-C9E96_RS11005;Name=kefC;gbkey=Gene;gene=kefC;gene_biotype=protein_coding;locus_tag=C9E96_RS11005;old_locus_tag=C9E96_11270
NZ_PYJX01000130.1	Protein Homology	CDS	6922	8784	.	+	0	ID=cds-WP_080204104.1;Parent=gene-C9E96_RS11005;Dbxref=GenBank:WP_080204104.1;Name=WP_080204104.1;Ontology_term=GO:0006813,GO:0015503;gbkey=CDS;gene=kefC;go_function=glutathione-regulated potassium exporter activity|0015503||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459091.1;locus_tag=C9E96_RS11005;product=glutathione-regulated potassium-efflux system protein KefC;protein_id=WP_080204104.1;transl_table=11
NZ_PYJX01000130.1	RefSeq	gene	8982	9461	.	+	.	ID=gene-C9E96_RS11010;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;locus_tag=C9E96_RS11010;old_locus_tag=C9E96_11280
NZ_PYJX01000130.1	Protein Homology	CDS	8982	9461	.	+	0	ID=cds-WP_135494200.1;Parent=gene-C9E96_RS11010;Dbxref=GenBank:WP_135494200.1;Name=WP_135494200.1;Ontology_term=GO:0046654,GO:0004146;gbkey=CDS;gene=folA;go_function=dihydrofolate reductase activity|0004146||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456510.1;locus_tag=C9E96_RS11010;product=type 3 dihydrofolate reductase;protein_id=WP_135494200.1;transl_table=11
##sequence-region NZ_PYJX01000202.1 1 9428
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000202.1	RefSeq	region	1	9428	.	+	.	ID=NZ_PYJX01000202.1:1..9428;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000202.1	RefSeq	pseudogene	1	637	.	-	.	ID=gene-C9E96_RS20200;Name=C9E96_RS20200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS20200;old_locus_tag=C9E96_20715;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000202.1	Protein Homology	CDS	1	637	.	-	0	ID=cds-C9E96_RS20200;Parent=gene-C9E96_RS20200;Note=catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019080489.1;locus_tag=C9E96_RS20200;partial=true;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000202.1	RefSeq	gene	1026	2648	.	+	.	ID=gene-C9E96_RS20205;Name=C9E96_RS20205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20205;old_locus_tag=C9E96_20725
NZ_PYJX01000202.1	Protein Homology	CDS	1026	2648	.	+	0	ID=cds-WP_023993183.1;Parent=gene-C9E96_RS20205;Dbxref=GenBank:WP_023993183.1;Name=WP_023993183.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459162.2;locus_tag=C9E96_RS20205;product=DUF3300 domain-containing protein;protein_id=WP_023993183.1;transl_table=11
NZ_PYJX01000202.1	RefSeq	gene	2661	3452	.	+	.	ID=gene-C9E96_RS20210;Name=C9E96_RS20210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20210;old_locus_tag=C9E96_20730
NZ_PYJX01000202.1	Protein Homology	CDS	2661	3452	.	+	0	ID=cds-WP_000757452.1;Parent=gene-C9E96_RS20210;Dbxref=GenBank:WP_000757452.1;Name=WP_000757452.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459161.1;locus_tag=C9E96_RS20210;product=DUF2950 family protein;protein_id=WP_000757452.1;transl_table=11
NZ_PYJX01000202.1	RefSeq	gene	3490	3774	.	-	.	ID=gene-C9E96_RS20215;Name=C9E96_RS20215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20215;old_locus_tag=C9E96_20735
NZ_PYJX01000202.1	Protein Homology	CDS	3490	3774	.	-	0	ID=cds-WP_000765363.1;Parent=gene-C9E96_RS20215;Dbxref=GenBank:WP_000765363.1;Name=WP_000765363.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459160.1;locus_tag=C9E96_RS20215;product=outer membrane protein;protein_id=WP_000765363.1;transl_table=11
NZ_PYJX01000202.1	RefSeq	gene	4063	5487	.	-	.	ID=gene-C9E96_RS20220;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=C9E96_RS20220;old_locus_tag=C9E96_20740
NZ_PYJX01000202.1	Protein Homology	CDS	4063	5487	.	-	0	ID=cds-WP_135494535.1;Parent=gene-C9E96_RS20220;Dbxref=GenBank:WP_135494535.1;Name=WP_135494535.1;Ontology_term=GO:0004148,GO:0050660;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase (NADH) activity|0004148||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001738005.1;locus_tag=C9E96_RS20220;product=dihydrolipoyl dehydrogenase;protein_id=WP_135494535.1;transl_table=11
NZ_PYJX01000202.1	RefSeq	gene	5688	7574	.	-	.	ID=gene-C9E96_RS20225;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=C9E96_RS20225;old_locus_tag=C9E96_20745
NZ_PYJX01000202.1	Protein Homology	CDS	5688	7574	.	-	0	ID=cds-WP_135494531.1;Parent=gene-C9E96_RS20225;Dbxref=GenBank:WP_135494531.1;Name=WP_135494531.1;Ontology_term=GO:0006096,GO:0004742,GO:0045254;gbkey=CDS;gene=aceF;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=dihydrolipoyllysine-residue acetyltransferase activity|0004742||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459158.2;locus_tag=C9E96_RS20225;product=pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase;protein_id=WP_135494531.1;transl_table=11
NZ_PYJX01000202.1	RefSeq	gene	7589	9428	.	-	.	ID=gene-C9E96_RS20230;Name=aceE;end_range=9428,.;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=C9E96_RS20230;old_locus_tag=C9E96_20750;partial=true
NZ_PYJX01000202.1	Protein Homology	CDS	7589	9428	.	-	1	ID=cds-WP_135494533.1;Parent=gene-C9E96_RS20230;Dbxref=GenBank:WP_135494533.1;Name=WP_135494533.1;Ontology_term=GO:0006086,GO:0004738,GO:0045254;end_range=9428,.;gbkey=CDS;gene=aceE;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=pyruvate dehydrogenase activity|0004738||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008814576.1;locus_tag=C9E96_RS20230;partial=true;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=WP_135494533.1;transl_table=11
##sequence-region NZ_PYJX01000208.1 1 9363
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000208.1	RefSeq	region	1	9363	.	+	.	ID=NZ_PYJX01000208.1:1..9363;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000208.1	RefSeq	gene	57	2501	.	-	.	ID=gene-C9E96_RS20890;Name=dmsA;gbkey=Gene;gene=dmsA;gene_biotype=protein_coding;locus_tag=C9E96_RS20890;old_locus_tag=C9E96_21415
NZ_PYJX01000208.1	Protein Homology	CDS	57	2501	.	-	0	ID=cds-WP_000850250.1;Parent=gene-C9E96_RS20890;Dbxref=GenBank:WP_000850250.1;Name=WP_000850250.1;Ontology_term=GO:0009389,GO:0030151;gbkey=CDS;gene=dmsA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA,molybdenum ion binding|0030151||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459940.1;locus_tag=C9E96_RS20890;product=dimethylsulfoxide reductase subunit A;protein_id=WP_000850250.1;transl_table=11
NZ_PYJX01000208.1	RefSeq	gene	2738	4030	.	-	.	ID=gene-C9E96_RS20895;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=C9E96_RS20895;old_locus_tag=C9E96_21420
NZ_PYJX01000208.1	Protein Homology	CDS	2738	4030	.	-	0	ID=cds-WP_000886697.1;Parent=gene-C9E96_RS20895;Dbxref=GenBank:WP_000886697.1;Name=WP_000886697.1;Ontology_term=GO:0006434,GO:0000166,GO:0004828,GO:0005524;gbkey=CDS;gene=serS;go_function=nucleotide binding|0000166||IEA,serine-tRNA ligase activity|0004828||IEA,ATP binding|0005524||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000887397.1;locus_tag=C9E96_RS20895;product=serine--tRNA ligase;protein_id=WP_000886697.1;transl_table=11
NZ_PYJX01000208.1	RefSeq	gene	4289	5632	.	-	.	ID=gene-C9E96_RS20900;Name=rarA;gbkey=Gene;gene=rarA;gene_biotype=protein_coding;gene_synonym=mgsA;locus_tag=C9E96_RS20900;old_locus_tag=C9E96_21425
NZ_PYJX01000208.1	Protein Homology	CDS	4289	5632	.	-	0	ID=cds-WP_000067785.1;Parent=gene-C9E96_RS20900;Dbxref=GenBank:WP_000067785.1;Name=WP_000067785.1;gbkey=CDS;gene=rarA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459938.1;locus_tag=C9E96_RS20900;product=replication-associated recombination protein RarA;protein_id=WP_000067785.1;transl_table=11
NZ_PYJX01000208.1	RefSeq	gene	5642	6253	.	-	.	ID=gene-C9E96_RS20905;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=C9E96_RS20905;old_locus_tag=C9E96_21430
NZ_PYJX01000208.1	Protein Homology	CDS	5642	6253	.	-	0	ID=cds-WP_001519746.1;Parent=gene-C9E96_RS20905;Dbxref=GenBank:WP_001519746.1;Name=WP_001519746.1;Ontology_term=GO:0042953,GO:0042597;gbkey=CDS;gene=lolA;go_component=periplasmic space|0042597||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010354356.1;locus_tag=C9E96_RS20905;product=outer membrane lipoprotein chaperone LolA;protein_id=WP_001519746.1;transl_table=11
NZ_PYJX01000208.1	RefSeq	pseudogene	6396	9203	.	-	.	ID=gene-C9E96_RS20910;Name=C9E96_RS20910;end_range=9203,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS20910;old_locus_tag=C9E96_21435;partial=true;pseudo=true
NZ_PYJX01000208.1	Protein Homology	CDS	6396	9203	.	-	0	ID=cds-C9E96_RS20910;Parent=gene-C9E96_RS20910;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=9203,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459936.1;locus_tag=C9E96_RS20910;partial=true;product=DNA translocase FtsK;pseudo=true;transl_table=11
NZ_PYJX01000208.1	RefSeq	pseudogene	9254	9363	.	-	.	ID=gene-C9E96_RS24320;Name=C9E96_RS24320;end_range=9363,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24320;old_locus_tag=C9E96_21440;partial=true;pseudo=true;start_range=.,9254
NZ_PYJX01000208.1	Protein Homology	CDS	9254	9363	.	-	2	ID=cds-C9E96_RS24320;Parent=gene-C9E96_RS24320;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=9363,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120975.1;locus_tag=C9E96_RS24320;partial=true;product=hypothetical protein;pseudo=true;start_range=.,9254;transl_table=11
##sequence-region NZ_PYJX01000087.1 1 9262
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000087.1	RefSeq	region	1	9262	.	+	.	ID=NZ_PYJX01000087.1:1..9262;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000087.1	RefSeq	gene	322	2391	.	-	.	ID=gene-C9E96_RS07880;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=C9E96_RS07880;old_locus_tag=C9E96_08075
NZ_PYJX01000087.1	Protein Homology	CDS	322	2391	.	-	0	ID=cds-WP_001291735.1;Parent=gene-C9E96_RS07880;Dbxref=GenBank:WP_001291735.1;Name=WP_001291735.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001291772.1;locus_tag=C9E96_RS07880;product=glycine--tRNA ligase subunit beta;protein_id=WP_001291735.1;transl_table=11
NZ_PYJX01000087.1	RefSeq	gene	2401	3312	.	-	.	ID=gene-C9E96_RS07885;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=C9E96_RS07885;old_locus_tag=C9E96_08080
NZ_PYJX01000087.1	Protein Homology	CDS	2401	3312	.	-	0	ID=cds-WP_135494064.1;Parent=gene-C9E96_RS07885;Dbxref=GenBank:WP_135494064.1;Name=WP_135494064.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyQ;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462556.1;locus_tag=C9E96_RS07885;product=glycine--tRNA ligase subunit alpha;protein_id=WP_135494064.1;transl_table=11
NZ_PYJX01000087.1	RefSeq	gene	3451	3753	.	-	.	ID=gene-C9E96_RS07890;Name=C9E96_RS07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07890;old_locus_tag=C9E96_08085
NZ_PYJX01000087.1	Protein Homology	CDS	3451	3753	.	-	0	ID=cds-WP_000605592.1;Parent=gene-C9E96_RS07890;Dbxref=GenBank:WP_000605592.1;Name=WP_000605592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462557.1;locus_tag=C9E96_RS07890;product=YsaB family lipoprotein;protein_id=WP_000605592.1;transl_table=11
NZ_PYJX01000087.1	RefSeq	gene	3919	4914	.	+	.	ID=gene-C9E96_RS07900;Name=C9E96_RS07900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07900;old_locus_tag=C9E96_08095
NZ_PYJX01000087.1	Protein Homology	CDS	3919	4914	.	+	0	ID=cds-WP_080203784.1;Parent=gene-C9E96_RS07900;Dbxref=GenBank:WP_080203784.1;Name=WP_080203784.1;Ontology_term=GO:0016413,GO:0016747;gbkey=CDS;go_function=O-acetyltransferase activity|0016413||IEA,acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462558.1;locus_tag=C9E96_RS07900;product=acyltransferase;protein_id=WP_080203784.1;transl_table=11
NZ_PYJX01000087.1	RefSeq	gene	4937	5290	.	-	.	ID=gene-C9E96_RS07905;Name=C9E96_RS07905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07905;old_locus_tag=C9E96_08100
NZ_PYJX01000087.1	Protein Homology	CDS	4937	5290	.	-	0	ID=cds-WP_000340935.1;Parent=gene-C9E96_RS07905;Dbxref=GenBank:WP_000340935.1;Name=WP_000340935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462559.1;locus_tag=C9E96_RS07905;product=YiaA/YiaB family protein;protein_id=WP_000340935.1;transl_table=11
NZ_PYJX01000087.1	RefSeq	gene	5465	6919	.	-	.	ID=gene-C9E96_RS07910;Name=xylB;gbkey=Gene;gene=xylB;gene_biotype=protein_coding;locus_tag=C9E96_RS07910;old_locus_tag=C9E96_08105
NZ_PYJX01000087.1	Protein Homology	CDS	5465	6919	.	-	0	ID=cds-WP_080203785.1;Parent=gene-C9E96_RS07910;Dbxref=GenBank:WP_080203785.1;Name=WP_080203785.1;Ontology_term=GO:0005997,GO:0004856;gbkey=CDS;gene=xylB;go_function=D-xylulokinase activity|0004856||IEA;go_process=xylulose metabolic process|0005997||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462560.1;locus_tag=C9E96_RS07910;product=xylulokinase;protein_id=WP_080203785.1;transl_table=11
NZ_PYJX01000087.1	RefSeq	gene	7019	8341	.	-	.	ID=gene-C9E96_RS07915;Name=xylA;gbkey=Gene;gene=xylA;gene_biotype=protein_coding;locus_tag=C9E96_RS07915;old_locus_tag=C9E96_08110
NZ_PYJX01000087.1	Protein Homology	CDS	7019	8341	.	-	0	ID=cds-WP_058144851.1;Parent=gene-C9E96_RS07915;Dbxref=GenBank:WP_058144851.1;Name=WP_058144851.1;Ontology_term=GO:0042732,GO:0009045;gbkey=CDS;gene=xylA;go_function=xylose isomerase activity|0009045||IEA;go_process=D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462561.1;locus_tag=C9E96_RS07915;product=xylose isomerase;protein_id=WP_058144851.1;transl_table=11
NZ_PYJX01000087.1	RefSeq	pseudogene	8704	9262	.	+	.	ID=gene-C9E96_RS07925;Name=xylR;end_range=9262,.;gbkey=Gene;gene=xylR;gene_biotype=pseudogene;locus_tag=C9E96_RS07925;old_locus_tag=C9E96_08120;partial=true;pseudo=true
NZ_PYJX01000087.1	Protein Homology	CDS	8704	9262	.	+	0	ID=cds-C9E96_RS07925;Parent=gene-C9E96_RS07925;Note=D-xylose enhances binding of XylR to the xyl promoter and activates transcription.%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=9262,.;gbkey=CDS;gene=xylR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462562.1;locus_tag=C9E96_RS07925;partial=true;product=D-xylose utilization transcriptional activator XylR;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000157.1 1 53990
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000157.1	RefSeq	region	1	53990	.	+	.	ID=NZ_PYJX01000157.1:1..53990;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000157.1	RefSeq	gene	141	1505	.	-	.	ID=gene-C9E96_RS13935;Name=rhlE;gbkey=Gene;gene=rhlE;gene_biotype=protein_coding;locus_tag=C9E96_RS13935;old_locus_tag=C9E96_14280
NZ_PYJX01000157.1	Protein Homology	CDS	141	1505	.	-	0	ID=cds-WP_023243507.1;Parent=gene-C9E96_RS13935;Dbxref=GenBank:WP_023243507.1;Name=WP_023243507.1;Ontology_term=GO:0003724;gbkey=CDS;gene=rhlE;go_function=RNA helicase activity|0003724||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459798.1;locus_tag=C9E96_RS13935;product=ATP-dependent RNA helicase RhlE;protein_id=WP_023243507.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	1735	2409	.	+	.	ID=gene-C9E96_RS13940;Name=cecR;gbkey=Gene;gene=cecR;gene_biotype=protein_coding;locus_tag=C9E96_RS13940;old_locus_tag=C9E96_14285
NZ_PYJX01000157.1	Protein Homology	CDS	1735	2409	.	+	0	ID=cds-WP_135494312.1;Parent=gene-C9E96_RS13940;Dbxref=GenBank:WP_135494312.1;Name=WP_135494312.1;gbkey=CDS;gene=cecR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459797.1;locus_tag=C9E96_RS13940;product=transcriptional regulator CecR;protein_id=WP_135494312.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	2409	3404	.	+	.	ID=gene-C9E96_RS13945;Name=hlyD;gbkey=Gene;gene=hlyD;gene_biotype=protein_coding;locus_tag=C9E96_RS13945;old_locus_tag=C9E96_14290
NZ_PYJX01000157.1	Protein Homology	CDS	2409	3404	.	+	0	ID=cds-WP_000743436.1;Parent=gene-C9E96_RS13945;Dbxref=GenBank:WP_000743436.1;Name=WP_000743436.1;gbkey=CDS;gene=hlyD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459796.1;locus_tag=C9E96_RS13945;product=secretion protein HlyD;protein_id=WP_000743436.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	3397	5133	.	+	.	ID=gene-C9E96_RS13950;Name=C9E96_RS13950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13950;old_locus_tag=C9E96_14295
NZ_PYJX01000157.1	Protein Homology	CDS	3397	5133	.	+	0	ID=cds-WP_080204051.1;Parent=gene-C9E96_RS13950;Dbxref=GenBank:WP_080204051.1;Name=WP_080204051.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459795.1;locus_tag=C9E96_RS13950;product=ATP-binding cassette domain-containing protein;protein_id=WP_080204051.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	5126	6256	.	+	.	ID=gene-C9E96_RS13955;Name=C9E96_RS13955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13955;old_locus_tag=C9E96_14300
NZ_PYJX01000157.1	Protein Homology	CDS	5126	6256	.	+	0	ID=cds-WP_000045765.1;Parent=gene-C9E96_RS13955;Dbxref=GenBank:WP_000045765.1;Name=WP_000045765.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459794.1;locus_tag=C9E96_RS13955;product=ABC transporter permease;protein_id=WP_000045765.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	6372	7478	.	+	.	ID=gene-C9E96_RS13960;Name=C9E96_RS13960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13960;old_locus_tag=C9E96_14305
NZ_PYJX01000157.1	Protein Homology	CDS	6372	7478	.	+	0	ID=cds-WP_000469050.1;Parent=gene-C9E96_RS13960;Dbxref=GenBank:WP_000469050.1;Name=WP_000469050.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459793.1;locus_tag=C9E96_RS13960;product=ABC transporter permease;protein_id=WP_000469050.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	7440	7850	.	-	.	ID=gene-C9E96_RS13965;Name=C9E96_RS13965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13965;old_locus_tag=C9E96_14310
NZ_PYJX01000157.1	Protein Homology	CDS	7440	7850	.	-	0	ID=cds-WP_000871970.1;Parent=gene-C9E96_RS13965;Dbxref=GenBank:WP_000871970.1;Name=WP_000871970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459792.1;locus_tag=C9E96_RS13965;product=YbhQ family protein;protein_id=WP_000871970.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	7983	8741	.	+	.	ID=gene-C9E96_RS13970;Name=C9E96_RS13970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13970;old_locus_tag=C9E96_14315
NZ_PYJX01000157.1	Protein Homology	CDS	7983	8741	.	+	0	ID=cds-WP_000192039.1;Parent=gene-C9E96_RS13970;Dbxref=GenBank:WP_000192039.1;Name=WP_000192039.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459791.1;locus_tag=C9E96_RS13970;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_000192039.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	8738	9979	.	+	.	ID=gene-C9E96_RS13975;Name=clsB;gbkey=Gene;gene=clsB;gene_biotype=protein_coding;locus_tag=C9E96_RS13975;old_locus_tag=C9E96_14320
NZ_PYJX01000157.1	Protein Homology	CDS	8738	9979	.	+	0	ID=cds-WP_023994030.1;Parent=gene-C9E96_RS13975;Dbxref=GenBank:WP_023994030.1;Name=WP_023994030.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=clsB;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459790.1;locus_tag=C9E96_RS13975;product=cardiolipin synthase ClsB;protein_id=WP_023994030.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	9979	10941	.	+	.	ID=gene-C9E96_RS13980;Name=C9E96_RS13980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13980;old_locus_tag=C9E96_14325
NZ_PYJX01000157.1	Protein Homology	CDS	9979	10941	.	+	0	ID=cds-WP_023994031.1;Parent=gene-C9E96_RS13980;Dbxref=GenBank:WP_023994031.1;Name=WP_023994031.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459789.1;locus_tag=C9E96_RS13980;product=lysylphosphatidylglycerol synthase transmembrane domain-containing protein;protein_id=WP_023994031.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	10944	11504	.	-	.	ID=gene-C9E96_RS13985;Name=C9E96_RS13985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13985;old_locus_tag=C9E96_14330
NZ_PYJX01000157.1	Protein Homology	CDS	10944	11504	.	-	0	ID=cds-WP_001052196.1;Parent=gene-C9E96_RS13985;Dbxref=GenBank:WP_001052196.1;Name=WP_001052196.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459788.1;locus_tag=C9E96_RS13985;product=hypothetical protein;protein_id=WP_001052196.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	11512	12120	.	-	.	ID=gene-C9E96_RS13990;Name=C9E96_RS13990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13990;old_locus_tag=C9E96_14335
NZ_PYJX01000157.1	Protein Homology	CDS	11512	12120	.	-	0	ID=cds-WP_023994328.1;Parent=gene-C9E96_RS13990;Dbxref=GenBank:WP_023994328.1;Name=WP_023994328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459787.1;locus_tag=C9E96_RS13990;product=hypothetical protein;protein_id=WP_023994328.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	12144	12851	.	-	.	ID=gene-C9E96_RS13995;Name=C9E96_RS13995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13995;old_locus_tag=C9E96_14340
NZ_PYJX01000157.1	Protein Homology	CDS	12144	12851	.	-	0	ID=cds-WP_023994327.1;Parent=gene-C9E96_RS13995;Dbxref=GenBank:WP_023994327.1;Name=WP_023994327.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459786.1;locus_tag=C9E96_RS13995;product=Bax inhibitor-1 family protein;protein_id=WP_023994327.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	12997	13701	.	-	.	ID=gene-C9E96_RS14000;Name=C9E96_RS14000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14000;old_locus_tag=C9E96_14350
NZ_PYJX01000157.1	Protein Homology	CDS	12997	13701	.	-	0	ID=cds-WP_000373611.1;Parent=gene-C9E96_RS14000;Dbxref=GenBank:WP_000373611.1;Name=WP_000373611.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459785.1;locus_tag=C9E96_RS14000;product=Bax inhibitor-1/YccA family protein;protein_id=WP_000373611.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	13749	14201	.	-	.	ID=gene-C9E96_RS14005;Name=moaE;gbkey=Gene;gene=moaE;gene_biotype=protein_coding;locus_tag=C9E96_RS14005;old_locus_tag=C9E96_14355
NZ_PYJX01000157.1	Protein Homology	CDS	13749	14201	.	-	0	ID=cds-WP_000545202.1;Parent=gene-C9E96_RS14005;Dbxref=GenBank:WP_000545202.1;Name=WP_000545202.1;Ontology_term=GO:0006777;gbkey=CDS;gene=moaE;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459784.1;locus_tag=C9E96_RS14005;product=molybdopterin synthase catalytic subunit MoaE;protein_id=WP_000545202.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	14203	14448	.	-	.	ID=gene-C9E96_RS14010;Name=moaD;gbkey=Gene;gene=moaD;gene_biotype=protein_coding;locus_tag=C9E96_RS14010;old_locus_tag=C9E96_14360
NZ_PYJX01000157.1	Protein Homology	CDS	14203	14448	.	-	0	ID=cds-WP_000598596.1;Parent=gene-C9E96_RS14010;Dbxref=GenBank:WP_000598596.1;Name=WP_000598596.1;Ontology_term=GO:0006777;gbkey=CDS;gene=moaD;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308889.1;locus_tag=C9E96_RS14010;product=molybdopterin synthase sulfur carrier subunit;protein_id=WP_000598596.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	14441	14926	.	-	.	ID=gene-C9E96_RS14015;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=C9E96_RS14015;old_locus_tag=C9E96_14365
NZ_PYJX01000157.1	Protein Homology	CDS	14441	14926	.	-	0	ID=cds-WP_000080894.1;Parent=gene-C9E96_RS14015;Dbxref=GenBank:WP_000080894.1;Name=WP_000080894.1;Ontology_term=GO:0006777,GO:0061799;gbkey=CDS;gene=moaC;go_function=cyclic pyranopterin monophosphate synthase activity|0061799||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459782.1;locus_tag=C9E96_RS14015;product=cyclic pyranopterin monophosphate synthase MoaC;protein_id=WP_000080894.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	14929	15441	.	-	.	ID=gene-C9E96_RS14020;Name=moaB;gbkey=Gene;gene=moaB;gene_biotype=protein_coding;locus_tag=C9E96_RS14020;old_locus_tag=C9E96_14370
NZ_PYJX01000157.1	Protein Homology	CDS	14929	15441	.	-	0	ID=cds-WP_000084604.1;Parent=gene-C9E96_RS14020;Dbxref=GenBank:WP_000084604.1;Name=WP_000084604.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=moaB;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123739.1;locus_tag=C9E96_RS14020;product=molybdenum cofactor biosynthesis protein B;protein_id=WP_000084604.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	15463	16452	.	-	.	ID=gene-C9E96_RS14025;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=C9E96_RS14025;old_locus_tag=C9E96_14375
NZ_PYJX01000157.1	Protein Homology	CDS	15463	16452	.	-	0	ID=cds-WP_000168181.1;Parent=gene-C9E96_RS14025;Dbxref=GenBank:WP_000168181.1;Name=WP_000168181.1;Ontology_term=GO:0006777,GO:0046872,GO:0051539;gbkey=CDS;gene=moaA;go_function=metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459780.1;locus_tag=C9E96_RS14025;product=GTP 3'%2C8-cyclase MoaA;protein_id=WP_000168181.1;transl_table=11
NZ_PYJX01000157.1	cmsearch	riboswitch	16440	16584	.	-	.	ID=id-NZ_PYJX01000157.1:16440..16584;Dbxref=RFAM:RF01055;Note=molybdenum cofactor riboswitch;bound_moiety=molybdenum cofactor;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYJX01000157.1	RefSeq	gene	16849	17757	.	+	.	ID=gene-C9E96_RS14030;Name=yvcK;gbkey=Gene;gene=yvcK;gene_biotype=protein_coding;locus_tag=C9E96_RS14030;old_locus_tag=C9E96_14380
NZ_PYJX01000157.1	Protein Homology	CDS	16849	17757	.	+	0	ID=cds-WP_001246033.1;Parent=gene-C9E96_RS14030;Dbxref=GenBank:WP_001246033.1;Name=WP_001246033.1;gbkey=CDS;gene=yvcK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459779.1;locus_tag=C9E96_RS14030;product=uridine diphosphate-N-acetylglucosamine-binding protein YvcK;protein_id=WP_001246033.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	17849	20146	.	-	.	ID=gene-C9E96_RS14035;Name=slrP;gbkey=Gene;gene=slrP;gene_biotype=protein_coding;locus_tag=C9E96_RS14035;old_locus_tag=C9E96_14385
NZ_PYJX01000157.1	Protein Homology	CDS	17849	20146	.	-	0	ID=cds-WP_080204050.1;Parent=gene-C9E96_RS14035;Dbxref=GenBank:WP_080204050.1;Name=WP_080204050.1;gbkey=CDS;gene=slrP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459778.1;locus_tag=C9E96_RS14035;product=SPI-1 type III secretion system effector E3 ubiquitin transferase SlrP;protein_id=WP_080204050.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	20154	20327	.	-	.	ID=gene-C9E96_RS14040;Name=C9E96_RS14040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14040;old_locus_tag=C9E96_14390
NZ_PYJX01000157.1	Protein Homology	CDS	20154	20327	.	-	0	ID=cds-WP_001616936.1;Parent=gene-C9E96_RS14040;Dbxref=GenBank:WP_001616936.1;Name=WP_001616936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447236.1;locus_tag=C9E96_RS14040;product=hypothetical protein;protein_id=WP_001616936.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	20636	22657	.	-	.	ID=gene-C9E96_RS14045;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=C9E96_RS14045;old_locus_tag=C9E96_14395
NZ_PYJX01000157.1	Protein Homology	CDS	20636	22657	.	-	0	ID=cds-WP_000042502.1;Parent=gene-C9E96_RS14045;Dbxref=GenBank:WP_000042502.1;Name=WP_000042502.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123745.1;locus_tag=C9E96_RS14045;product=excinuclease ABC subunit UvrB;protein_id=WP_000042502.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	23308	23994	.	-	.	ID=gene-C9E96_RS14055;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=C9E96_RS14055;old_locus_tag=C9E96_14405
NZ_PYJX01000157.1	Protein Homology	CDS	23308	23994	.	-	0	ID=cds-WP_001616933.1;Parent=gene-C9E96_RS14055;Dbxref=GenBank:WP_001616933.1;Name=WP_001616933.1;Ontology_term=GO:0009102,GO:0000287,GO:0004141,GO:0005524;gbkey=CDS;gene=bioD;go_function=magnesium ion binding|0000287||IEA,dethiobiotin synthase activity|0004141||IEA,ATP binding|0005524||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459775.1;locus_tag=C9E96_RS14055;product=dethiobiotin synthase;protein_id=WP_001616933.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	23987	24742	.	-	.	ID=gene-C9E96_RS14060;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=C9E96_RS14060;old_locus_tag=C9E96_14410
NZ_PYJX01000157.1	Protein Homology	CDS	23987	24742	.	-	0	ID=cds-WP_000079914.1;Parent=gene-C9E96_RS14060;Dbxref=GenBank:WP_000079914.1;Name=WP_000079914.1;Ontology_term=GO:0009102,GO:0010340;gbkey=CDS;gene=bioC;go_function=carboxyl-O-methyltransferase activity|0010340||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459774.1;locus_tag=C9E96_RS14060;product=malonyl-ACP O-methyltransferase BioC;protein_id=WP_000079914.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	24726	25883	.	-	.	ID=gene-C9E96_RS14065;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=C9E96_RS14065;old_locus_tag=C9E96_14415
NZ_PYJX01000157.1	Protein Homology	CDS	24726	25883	.	-	0	ID=cds-WP_023994035.1;Parent=gene-C9E96_RS14065;Dbxref=GenBank:WP_023994035.1;Name=WP_023994035.1;Ontology_term=GO:0009102,GO:0008710;gbkey=CDS;gene=bioF;go_function=8-amino-7-oxononanoate synthase activity|0008710||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459773.1;locus_tag=C9E96_RS14065;product=8-amino-7-oxononanoate synthase;protein_id=WP_023994035.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	25880	26920	.	-	.	ID=gene-C9E96_RS14070;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=C9E96_RS14070;old_locus_tag=C9E96_14420
NZ_PYJX01000157.1	Protein Homology	CDS	25880	26920	.	-	0	ID=cds-WP_000090729.1;Parent=gene-C9E96_RS14070;Dbxref=GenBank:WP_000090729.1;Name=WP_000090729.1;Ontology_term=GO:0009102,GO:0004076,GO:0051536,GO:1904047;gbkey=CDS;gene=bioB;go_function=biotin synthase activity|0004076||IEA,iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459772.1;locus_tag=C9E96_RS14070;product=biotin synthase BioB;protein_id=WP_000090729.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	27007	28296	.	+	.	ID=gene-C9E96_RS14075;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=C9E96_RS14075;old_locus_tag=C9E96_14425
NZ_PYJX01000157.1	Protein Homology	CDS	27007	28296	.	+	0	ID=cds-WP_135494314.1;Parent=gene-C9E96_RS14075;Dbxref=GenBank:WP_135494314.1;Name=WP_135494314.1;Ontology_term=GO:0009102,GO:0004015,GO:0030170;gbkey=CDS;gene=bioA;go_function=adenosylmethionine-8-amino-7-oxononanoate transaminase activity|0004015||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459771.1;locus_tag=C9E96_RS14075;product=adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=WP_135494314.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	28354	28830	.	+	.	ID=gene-C9E96_RS14080;Name=C9E96_RS14080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14080;old_locus_tag=C9E96_14430
NZ_PYJX01000157.1	Protein Homology	CDS	28354	28830	.	+	0	ID=cds-WP_000767403.1;Parent=gene-C9E96_RS14080;Dbxref=GenBank:WP_000767403.1;Name=WP_000767403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459770.1;locus_tag=C9E96_RS14080;product=kinase inhibitor;protein_id=WP_000767403.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	28915	30435	.	-	.	ID=gene-C9E96_RS14085;Name=hutH;gbkey=Gene;gene=hutH;gene_biotype=protein_coding;locus_tag=C9E96_RS14085;old_locus_tag=C9E96_14435
NZ_PYJX01000157.1	Protein Homology	CDS	28915	30435	.	-	0	ID=cds-WP_080204049.1;Parent=gene-C9E96_RS14085;Dbxref=GenBank:WP_080204049.1;Name=WP_080204049.1;Ontology_term=GO:0006548,GO:0004397,GO:0005737;gbkey=CDS;gene=hutH;go_component=cytoplasm|0005737||IEA;go_function=histidine ammonia-lyase activity|0004397||IEA;go_process=L-histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459769.1;locus_tag=C9E96_RS14085;product=histidine ammonia-lyase;protein_id=WP_080204049.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	30437	32122	.	-	.	ID=gene-C9E96_RS14090;Name=hutU;gbkey=Gene;gene=hutU;gene_biotype=protein_coding;locus_tag=C9E96_RS14090;old_locus_tag=C9E96_14440
NZ_PYJX01000157.1	Protein Homology	CDS	30437	32122	.	-	0	ID=cds-WP_001115209.1;Parent=gene-C9E96_RS14090;Dbxref=GenBank:WP_001115209.1;Name=WP_001115209.1;Ontology_term=GO:0006548,GO:0016153;gbkey=CDS;gene=hutU;go_function=urocanate hydratase activity|0016153||IEA;go_process=L-histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441920.1;locus_tag=C9E96_RS14090;product=urocanate hydratase;protein_id=WP_001115209.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	32319	33044	.	-	.	ID=gene-C9E96_RS14095;Name=C9E96_RS14095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14095;old_locus_tag=C9E96_14445
NZ_PYJX01000157.1	Protein Homology	CDS	32319	33044	.	-	0	ID=cds-WP_000287413.1;Parent=gene-C9E96_RS14095;Dbxref=GenBank:WP_000287413.1;Name=WP_000287413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459768.1;locus_tag=C9E96_RS14095;product=histidine utilization repressor;protein_id=WP_000287413.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	33089	34030	.	-	.	ID=gene-C9E96_RS14100;Name=hutG;gbkey=Gene;gene=hutG;gene_biotype=protein_coding;locus_tag=C9E96_RS14100;old_locus_tag=C9E96_14450
NZ_PYJX01000157.1	Protein Homology	CDS	33089	34030	.	-	0	ID=cds-WP_000195688.1;Parent=gene-C9E96_RS14100;Dbxref=GenBank:WP_000195688.1;Name=WP_000195688.1;Ontology_term=GO:0019556,GO:0050415;gbkey=CDS;gene=hutG;go_function=formimidoylglutamase activity|0050415||IEA;go_process=L-histidine catabolic process to glutamate and formamide|0019556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459767.1;locus_tag=C9E96_RS14100;product=formimidoylglutamase;protein_id=WP_000195688.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	34027	35250	.	-	.	ID=gene-C9E96_RS14105;Name=hutI;gbkey=Gene;gene=hutI;gene_biotype=protein_coding;locus_tag=C9E96_RS14105;old_locus_tag=C9E96_14455
NZ_PYJX01000157.1	Protein Homology	CDS	34027	35250	.	-	0	ID=cds-WP_080204048.1;Parent=gene-C9E96_RS14105;Dbxref=GenBank:WP_080204048.1;Name=WP_080204048.1;Ontology_term=GO:0019556,GO:0016812,GO:0050480,GO:0005737;gbkey=CDS;gene=hutI;go_component=cytoplasm|0005737||IEA;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides|0016812||IEA,imidazolonepropionase activity|0050480||IEA;go_process=L-histidine catabolic process to glutamate and formamide|0019556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459766.1;locus_tag=C9E96_RS14105;product=imidazolonepropionase;protein_id=WP_080204048.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	35488	36771	.	+	.	ID=gene-C9E96_RS14110;Name=C9E96_RS14110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14110;old_locus_tag=C9E96_14460
NZ_PYJX01000157.1	Protein Homology	CDS	35488	36771	.	+	0	ID=cds-WP_001094776.1;Parent=gene-C9E96_RS14110;Dbxref=GenBank:WP_001094776.1;Name=WP_001094776.1;Ontology_term=GO:0042545,GO:0030599;gbkey=CDS;go_function=pectinesterase activity|0030599||IEA;go_process=cell wall modification|0042545||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459765.1;locus_tag=C9E96_RS14110;product=putative acyl-CoA thioester hydrolase;protein_id=WP_001094776.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	36915	37910	.	-	.	ID=gene-C9E96_RS14115;Name=pgl;gbkey=Gene;gene=pgl;gene_biotype=protein_coding;gene_synonym=ybhE;locus_tag=C9E96_RS14115;old_locus_tag=C9E96_14465
NZ_PYJX01000157.1	Protein Homology	CDS	36915	37910	.	-	0	ID=cds-WP_000815468.1;Parent=gene-C9E96_RS14115;Dbxref=GenBank:WP_000815468.1;Name=WP_000815468.1;Ontology_term=GO:0017057;gbkey=CDS;gene=pgl;go_function=6-phosphogluconolactonase activity|0017057||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459764.1;locus_tag=C9E96_RS14115;product=6-phosphogluconolactonase;protein_id=WP_000815468.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	38074	38892	.	+	.	ID=gene-C9E96_RS14120;Name=C9E96_RS14120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14120;old_locus_tag=C9E96_14470
NZ_PYJX01000157.1	Protein Homology	CDS	38074	38892	.	+	0	ID=cds-WP_000127031.1;Parent=gene-C9E96_RS14120;Dbxref=GenBank:WP_000127031.1;Name=WP_000127031.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459763.1;locus_tag=C9E96_RS14120;product=pyridoxal phosphatase;protein_id=WP_000127031.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	38893	39951	.	-	.	ID=gene-C9E96_RS14125;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=C9E96_RS14125;old_locus_tag=C9E96_14475
NZ_PYJX01000157.1	Protein Homology	CDS	38893	39951	.	-	0	ID=cds-WP_000891715.1;Parent=gene-C9E96_RS14125;Dbxref=GenBank:WP_000891715.1;Name=WP_000891715.1;Ontology_term=GO:0015689,GO:0005524,GO:0015098,GO:0016020;gbkey=CDS;gene=modC;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459762.1;locus_tag=C9E96_RS14125;product=molybdenum ABC transporter ATP-binding protein ModC;protein_id=WP_000891715.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	39954	40643	.	-	.	ID=gene-C9E96_RS14130;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;locus_tag=C9E96_RS14130;old_locus_tag=C9E96_14480
NZ_PYJX01000157.1	Protein Homology	CDS	39954	40643	.	-	0	ID=cds-WP_000604026.1;Parent=gene-C9E96_RS14130;Dbxref=GenBank:WP_000604026.1;Name=WP_000604026.1;Ontology_term=GO:0015689,GO:0015098,GO:0016020;gbkey=CDS;gene=modB;go_component=membrane|0016020||IEA;go_function=molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459761.1;locus_tag=C9E96_RS14130;product=molybdate ABC transporter permease subunit;protein_id=WP_000604026.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	40643	41416	.	-	.	ID=gene-C9E96_RS14135;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=C9E96_RS14135;old_locus_tag=C9E96_14485
NZ_PYJX01000157.1	Protein Homology	CDS	40643	41416	.	-	0	ID=cds-WP_000951408.1;Parent=gene-C9E96_RS14135;Dbxref=GenBank:WP_000951408.1;Name=WP_000951408.1;Ontology_term=GO:0015689;gbkey=CDS;gene=modA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459760.1;locus_tag=C9E96_RS14135;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_000951408.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	41583	41732	.	-	.	ID=gene-C9E96_RS14140;Name=C9E96_RS14140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14140;old_locus_tag=C9E96_14490
NZ_PYJX01000157.1	Protein Homology	CDS	41583	41732	.	-	0	ID=cds-WP_000891513.1;Parent=gene-C9E96_RS14140;Dbxref=GenBank:WP_000891513.1;Name=WP_000891513.1;Ontology_term=GO:1990961,GO:0042910,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459759.1;locus_tag=C9E96_RS14140;product=AcrZ family multidrug efflux pump-associated protein;protein_id=WP_000891513.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	41861	42649	.	+	.	ID=gene-C9E96_RS14145;Name=modE;gbkey=Gene;gene=modE;gene_biotype=protein_coding;locus_tag=C9E96_RS14145;old_locus_tag=C9E96_14495
NZ_PYJX01000157.1	Protein Homology	CDS	41861	42649	.	+	0	ID=cds-WP_001147413.1;Parent=gene-C9E96_RS14145;Dbxref=GenBank:WP_001147413.1;Name=WP_001147413.1;Ontology_term=GO:0006355,GO:0015689,GO:0003700,GO:0030151;gbkey=CDS;gene=modE;go_function=DNA-binding transcription factor activity|0003700||IEA,molybdenum ion binding|0030151||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459758.1;locus_tag=C9E96_RS14145;product=molybdenum-dependent transcriptional regulator;protein_id=WP_001147413.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	42717	44192	.	+	.	ID=gene-C9E96_RS14150;Name=modF;gbkey=Gene;gene=modF;gene_biotype=protein_coding;locus_tag=C9E96_RS14150;old_locus_tag=C9E96_14500
NZ_PYJX01000157.1	Protein Homology	CDS	42717	44192	.	+	0	ID=cds-WP_135494316.1;Parent=gene-C9E96_RS14150;Dbxref=GenBank:WP_135494316.1;Name=WP_135494316.1;Ontology_term=GO:0005524;gbkey=CDS;gene=modF;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459757.1;locus_tag=C9E96_RS14150;product=molybdate ABC transporter ATP-binding protein ModF;protein_id=WP_135494316.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	44363	45271	.	+	.	ID=gene-C9E96_RS14155;Name=C9E96_RS14155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14155;old_locus_tag=C9E96_14505
NZ_PYJX01000157.1	Protein Homology	CDS	44363	45271	.	+	0	ID=cds-WP_000885519.1;Parent=gene-C9E96_RS14155;Dbxref=GenBank:WP_000885519.1;Name=WP_000885519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459756.1;locus_tag=C9E96_RS14155;product=DUF2167 domain-containing protein;protein_id=WP_000885519.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	45494	46510	.	+	.	ID=gene-C9E96_RS14160;Name=galE;gbkey=Gene;gene=galE;gene_biotype=protein_coding;locus_tag=C9E96_RS14160;old_locus_tag=C9E96_14510
NZ_PYJX01000157.1	Protein Homology	CDS	45494	46510	.	+	0	ID=cds-WP_135494318.1;Parent=gene-C9E96_RS14160;Dbxref=GenBank:WP_135494318.1;Name=WP_135494318.1;Ontology_term=GO:0006012,GO:0003978;gbkey=CDS;gene=galE;go_function=UDP-glucose 4-epimerase activity|0003978||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459755.1;locus_tag=C9E96_RS14160;product=UDP-glucose 4-epimerase GalE;protein_id=WP_135494318.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	46521	47567	.	+	.	ID=gene-C9E96_RS14165;Name=galT;gbkey=Gene;gene=galT;gene_biotype=protein_coding;locus_tag=C9E96_RS14165;old_locus_tag=C9E96_14515
NZ_PYJX01000157.1	Protein Homology	CDS	46521	47567	.	+	0	ID=cds-WP_000187471.1;Parent=gene-C9E96_RS14165;Dbxref=GenBank:WP_000187471.1;Name=WP_000187471.1;Ontology_term=GO:0006012,GO:0008108,GO:0008270;gbkey=CDS;gene=galT;go_function=UDP-glucose:hexose-1-phosphate uridylyltransferase activity|0008108||IEA,zinc ion binding|0008270||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459754.1;locus_tag=C9E96_RS14165;product=galactose-1-phosphate uridylyltransferase;protein_id=WP_000187471.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	47570	48718	.	+	.	ID=gene-C9E96_RS14170;Name=galK;gbkey=Gene;gene=galK;gene_biotype=protein_coding;locus_tag=C9E96_RS14170;old_locus_tag=C9E96_14520
NZ_PYJX01000157.1	Protein Homology	CDS	47570	48718	.	+	0	ID=cds-WP_023195255.1;Parent=gene-C9E96_RS14170;Dbxref=GenBank:WP_023195255.1;Name=WP_023195255.1;Ontology_term=GO:0006012,GO:0046835,GO:0004335,GO:0005524;gbkey=CDS;gene=galK;go_function=galactokinase activity|0004335||IEA,ATP binding|0005524||IEA;go_process=galactose metabolic process|0006012||IEA,carbohydrate phosphorylation|0046835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001713229.1;locus_tag=C9E96_RS14170;product=galactokinase;protein_id=WP_023195255.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	48712	49752	.	+	.	ID=gene-C9E96_RS14175;Name=galM;gbkey=Gene;gene=galM;gene_biotype=protein_coding;locus_tag=C9E96_RS14175;old_locus_tag=C9E96_14525
NZ_PYJX01000157.1	Protein Homology	CDS	48712	49752	.	+	0	ID=cds-WP_000931428.1;Parent=gene-C9E96_RS14175;Dbxref=GenBank:WP_000931428.1;Name=WP_000931428.1;Ontology_term=GO:0006012,GO:0004034;gbkey=CDS;gene=galM;go_function=aldose 1-epimerase activity|0004034||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459752.1;locus_tag=C9E96_RS14175;product=galactose-1-epimerase;protein_id=WP_000931428.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	49976	50728	.	+	.	ID=gene-C9E96_RS14180;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=C9E96_RS14180;old_locus_tag=C9E96_14535
NZ_PYJX01000157.1	Protein Homology	CDS	49976	50728	.	+	0	ID=cds-WP_000301554.1;Parent=gene-C9E96_RS14180;Dbxref=GenBank:WP_000301554.1;Name=WP_000301554.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmA;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000301556.1;locus_tag=C9E96_RS14180;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_000301554.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	50819	51595	.	-	.	ID=gene-C9E96_RS14185;Name=C9E96_RS14185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14185;old_locus_tag=C9E96_14540
NZ_PYJX01000157.1	Protein Homology	CDS	50819	51595	.	-	0	ID=cds-WP_023994044.1;Parent=gene-C9E96_RS14185;Dbxref=GenBank:WP_023994044.1;Name=WP_023994044.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459750.1;locus_tag=C9E96_RS14185;product=ABC transporter ATP-binding protein;protein_id=WP_023994044.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	51595	52674	.	-	.	ID=gene-C9E96_RS14190;Name=C9E96_RS14190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14190;old_locus_tag=C9E96_14545
NZ_PYJX01000157.1	Protein Homology	CDS	51595	52674	.	-	0	ID=cds-WP_023244999.1;Parent=gene-C9E96_RS14190;Dbxref=GenBank:WP_023244999.1;Name=WP_023244999.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459749.1;locus_tag=C9E96_RS14190;product=FecCD family ABC transporter permease;protein_id=WP_023244999.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	53054	53752	.	-	.	ID=gene-C9E96_RS14195;Name=C9E96_RS14195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14195;old_locus_tag=C9E96_14550
NZ_PYJX01000157.1	Protein Homology	CDS	53054	53752	.	-	0	ID=cds-WP_135369881.1;Parent=gene-C9E96_RS14195;Dbxref=GenBank:WP_135369881.1;Name=WP_135369881.1;Ontology_term=GO:0016310,GO:0005524,GO:0046917;gbkey=CDS;go_function=ATP binding|0005524||IEA,triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459748.1;locus_tag=C9E96_RS14195;product=triphosphoribosyl-dephospho-CoA synthase;protein_id=WP_135369881.1;transl_table=11
NZ_PYJX01000157.1	RefSeq	gene	53871	53990	.	-	.	ID=gene-C9E96_RS14200;Name=C9E96_RS14200;end_range=53990,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14200;old_locus_tag=C9E96_14555;partial=true
NZ_PYJX01000157.1	Protein Homology	CDS	53871	53990	.	-	0	ID=cds-WP_072143887.1;Parent=gene-C9E96_RS14200;Dbxref=GenBank:WP_072143887.1;Name=WP_072143887.1;Ontology_term=GO:0006814,GO:0016829;end_range=53990,.;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459059.1;locus_tag=C9E96_RS14200;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_072143887.1;transl_table=11
##sequence-region NZ_PYJX01000223.1 1 9176
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000223.1	RefSeq	region	1	9176	.	+	.	ID=NZ_PYJX01000223.1:1..9176;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000223.1	RefSeq	pseudogene	1	896	.	+	.	ID=gene-C9E96_RS21895;Name=C9E96_RS21895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS21895;old_locus_tag=C9E96_22435;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000223.1	Protein Homology	CDS	1	896	.	+	2	ID=cds-C9E96_RS21895;Parent=gene-C9E96_RS21895;Note=internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0009401,GO:0022877,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461149.1;locus_tag=C9E96_RS21895;partial=true;product=fructose-specific PTS transporter subunit EIIC;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000223.1	RefSeq	gene	961	1818	.	-	.	ID=gene-C9E96_RS21900;Name=nfo;gbkey=Gene;gene=nfo;gene_biotype=protein_coding;locus_tag=C9E96_RS21900;old_locus_tag=C9E96_22440
NZ_PYJX01000223.1	Protein Homology	CDS	961	1818	.	-	0	ID=cds-WP_000873906.1;Parent=gene-C9E96_RS21900;Dbxref=GenBank:WP_000873906.1;Name=WP_000873906.1;Ontology_term=GO:0006281,GO:0003677,GO:0008270;gbkey=CDS;gene=nfo;go_function=DNA binding|0003677||IEA,zinc ion binding|0008270||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461148.1;locus_tag=C9E96_RS21900;product=deoxyribonuclease IV;protein_id=WP_000873906.1;transl_table=11
NZ_PYJX01000223.1	RefSeq	gene	1897	2946	.	-	.	ID=gene-C9E96_RS21905;Name=C9E96_RS21905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21905;old_locus_tag=C9E96_22445
NZ_PYJX01000223.1	Protein Homology	CDS	1897	2946	.	-	0	ID=cds-WP_000137961.1;Parent=gene-C9E96_RS21905;Dbxref=GenBank:WP_000137961.1;Name=WP_000137961.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461147.1;locus_tag=C9E96_RS21905;product=YeiH family protein;protein_id=WP_000137961.1;transl_table=11
NZ_PYJX01000223.1	RefSeq	gene	3067	3930	.	+	.	ID=gene-C9E96_RS21910;Name=yieE;gbkey=Gene;gene=yieE;gene_biotype=protein_coding;locus_tag=C9E96_RS21910;old_locus_tag=C9E96_22450
NZ_PYJX01000223.1	Protein Homology	CDS	3067	3930	.	+	0	ID=cds-WP_000548316.1;Parent=gene-C9E96_RS21910;Dbxref=GenBank:WP_000548316.1;Name=WP_000548316.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yieE;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461146.1;locus_tag=C9E96_RS21910;product=DNA-binding transcriptional regulator YeiE;protein_id=WP_000548316.1;transl_table=11
NZ_PYJX01000223.1	RefSeq	gene	4120	5589	.	+	.	ID=gene-C9E96_RS21915;Name=lysP;gbkey=Gene;gene=lysP;gene_biotype=protein_coding;locus_tag=C9E96_RS21915;old_locus_tag=C9E96_22455
NZ_PYJX01000223.1	Protein Homology	CDS	4120	5589	.	+	0	ID=cds-WP_000535000.1;Parent=gene-C9E96_RS21915;Dbxref=GenBank:WP_000535000.1;Name=WP_000535000.1;gbkey=CDS;gene=lysP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461145.1;locus_tag=C9E96_RS21915;product=lysine-specific permease;protein_id=WP_000535000.1;transl_table=11
NZ_PYJX01000223.1	RefSeq	gene	5935	7926	.	+	.	ID=gene-C9E96_RS21925;Name=cirA;gbkey=Gene;gene=cirA;gene_biotype=protein_coding;locus_tag=C9E96_RS21925;old_locus_tag=C9E96_22465
NZ_PYJX01000223.1	Protein Homology	CDS	5935	7926	.	+	0	ID=cds-WP_000488252.1;Parent=gene-C9E96_RS21925;Dbxref=GenBank:WP_000488252.1;Name=WP_000488252.1;gbkey=CDS;gene=cirA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461144.1;locus_tag=C9E96_RS21925;product=catecholate siderophore receptor CirA;protein_id=WP_000488252.1;transl_table=11
NZ_PYJX01000223.1	RefSeq	gene	7970	9176	.	-	.	ID=gene-C9E96_RS21930;Name=C9E96_RS21930;end_range=9176,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21930;old_locus_tag=C9E96_22470;partial=true
NZ_PYJX01000223.1	Protein Homology	CDS	7970	9176	.	-	1	ID=cds-WP_135494620.1;Parent=gene-C9E96_RS21930;Dbxref=GenBank:WP_135494620.1;Name=WP_135494620.1;Ontology_term=GO:0055085,GO:0022857;end_range=9176,.;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461143.1;locus_tag=C9E96_RS21930;partial=true;product=MFS transporter;protein_id=WP_135494620.1;transl_table=11
##sequence-region NZ_PYJX01000088.1 1 9145
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000088.1	RefSeq	region	1	9145	.	+	.	ID=NZ_PYJX01000088.1:1..9145;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000088.1	RefSeq	gene	1	393	.	+	.	ID=gene-C9E96_RS07930;Name=C9E96_RS07930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07930;old_locus_tag=C9E96_08125;partial=true;start_range=.,1
NZ_PYJX01000088.1	Protein Homology	CDS	1	393	.	+	0	ID=cds-WP_135494066.1;Parent=gene-C9E96_RS07930;Dbxref=GenBank:WP_135494066.1;Name=WP_135494066.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000143158.1;locus_tag=C9E96_RS07930;partial=true;product=tail fiber assembly protein;protein_id=WP_135494066.1;start_range=.,1;transl_table=11
NZ_PYJX01000088.1	RefSeq	gene	590	1312	.	-	.	ID=gene-C9E96_RS07935;Name=sopE;gbkey=Gene;gene=sopE;gene_biotype=protein_coding;locus_tag=C9E96_RS07935;old_locus_tag=C9E96_08130
NZ_PYJX01000088.1	Protein Homology	CDS	590	1312	.	-	0	ID=cds-WP_000161705.1;Parent=gene-C9E96_RS07935;Dbxref=GenBank:WP_000161705.1;Name=WP_000161705.1;gbkey=CDS;gene=sopE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000161708.1;locus_tag=C9E96_RS07935;product=SPI-1 type III secretion system guanine nucleotide exchange factor SopE;protein_id=WP_000161705.1;transl_table=11
NZ_PYJX01000088.1	RefSeq	pseudogene	1521	1742	.	+	.	ID=gene-C9E96_RS07940;Name=C9E96_RS07940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS07940;old_locus_tag=C9E96_08135;partial=true;pseudo=true;start_range=.,1521
NZ_PYJX01000088.1	Protein Homology	CDS	1521	1742	.	+	0	ID=cds-C9E96_RS07940;Parent=gene-C9E96_RS07940;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006673699.1;locus_tag=C9E96_RS07940;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,1521;transl_table=11
NZ_PYJX01000088.1	RefSeq	gene	1962	3182	.	+	.	ID=gene-C9E96_RS07945;Name=C9E96_RS07945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07945;old_locus_tag=C9E96_08140
NZ_PYJX01000088.1	Protein Homology	CDS	1962	3182	.	+	0	ID=cds-WP_000343758.1;Parent=gene-C9E96_RS07945;Dbxref=GenBank:WP_000343758.1;Name=WP_000343758.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_065945178.1;locus_tag=C9E96_RS07945;product=ISL3 family transposase;protein_id=WP_000343758.1;transl_table=11
NZ_PYJX01000088.1	RefSeq	gene	3179	3604	.	-	.	ID=gene-C9E96_RS07950;Name=C9E96_RS07950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07950;old_locus_tag=C9E96_08145
NZ_PYJX01000088.1	Protein Homology	CDS	3179	3604	.	-	0	ID=cds-WP_024143826.1;Parent=gene-C9E96_RS07950;Dbxref=GenBank:WP_024143826.1;Name=WP_024143826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015675523.1;locus_tag=C9E96_RS07950;product=hypothetical protein;protein_id=WP_024143826.1;transl_table=11
NZ_PYJX01000088.1	RefSeq	gene	4109	6721	.	+	.	ID=gene-C9E96_RS07955;Name=pepN;gbkey=Gene;gene=pepN;gene_biotype=protein_coding;locus_tag=C9E96_RS07955;old_locus_tag=C9E96_08150
NZ_PYJX01000088.1	Protein Homology	CDS	4109	6721	.	+	0	ID=cds-WP_000193775.1;Parent=gene-C9E96_RS07955;Dbxref=GenBank:WP_000193775.1;Name=WP_000193775.1;Ontology_term=GO:0006508,GO:0004177,GO:0008237,GO:0008270;gbkey=CDS;gene=pepN;go_function=aminopeptidase activity|0004177||IEA,metallopeptidase activity|0008237||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000193787.1;locus_tag=C9E96_RS07955;product=aminopeptidase N;protein_id=WP_000193775.1;transl_table=11
NZ_PYJX01000088.1	RefSeq	gene	6929	7939	.	+	.	ID=gene-C9E96_RS07960;Name=pyrD;gbkey=Gene;gene=pyrD;gene_biotype=protein_coding;locus_tag=C9E96_RS07960;old_locus_tag=C9E96_08155
NZ_PYJX01000088.1	Protein Homology	CDS	6929	7939	.	+	0	ID=cds-WP_135494068.1;Parent=gene-C9E96_RS07960;Dbxref=GenBank:WP_135494068.1;Name=WP_135494068.1;Ontology_term=GO:0006222,GO:0004152,GO:0016020;gbkey=CDS;gene=pyrD;go_component=membrane|0016020||IEA;go_function=dihydroorotate dehydrogenase activity|0004152||IEA;go_process=UMP biosynthetic process|0006222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460032.1;locus_tag=C9E96_RS07960;product=quinone-dependent dihydroorotate dehydrogenase;protein_id=WP_135494068.1;transl_table=11
NZ_PYJX01000088.1	RefSeq	gene	8105	8647	.	+	.	ID=gene-C9E96_RS07965;Name=zapC;gbkey=Gene;gene=zapC;gene_biotype=protein_coding;locus_tag=C9E96_RS07965;old_locus_tag=C9E96_08160
NZ_PYJX01000088.1	Protein Homology	CDS	8105	8647	.	+	0	ID=cds-WP_135494070.1;Parent=gene-C9E96_RS07965;Dbxref=GenBank:WP_135494070.1;Name=WP_135494070.1;gbkey=CDS;gene=zapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460033.1;locus_tag=C9E96_RS07965;product=cell division protein ZapC;protein_id=WP_135494070.1;transl_table=11
NZ_PYJX01000088.1	RefSeq	pseudogene	8644	9105	.	-	.	ID=gene-C9E96_RS07970;Name=C9E96_RS07970;end_range=9105,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS07970;old_locus_tag=C9E96_08165;partial=true;pseudo=true
NZ_PYJX01000088.1	Protein Homology	CDS	8644	9105	.	-	0	ID=cds-C9E96_RS07970;Parent=gene-C9E96_RS07970;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0051536;end_range=9105,.;gbkey=CDS;go_function=iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460034.1;locus_tag=C9E96_RS07970;partial=true;product=2Fe-2S iron-sulfur cluster-binding protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000052.1 1 9036
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000052.1	RefSeq	region	1	9036	.	+	.	ID=NZ_PYJX01000052.1:1..9036;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000052.1	RefSeq	pseudogene	1	93	.	+	.	ID=gene-C9E96_RS04565;Name=C9E96_RS04565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS04565;old_locus_tag=C9E96_04670;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000052.1	Protein Homology	CDS	1	93	.	+	0	ID=cds-C9E96_RS04565;Parent=gene-C9E96_RS04565;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459274.1;locus_tag=C9E96_RS04565;partial=true;product=type VI secretion system tube protein Hcp;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000052.1	RefSeq	gene	160	696	.	+	.	ID=gene-C9E96_RS04570;Name=tssJ;gbkey=Gene;gene=tssJ;gene_biotype=protein_coding;locus_tag=C9E96_RS04570;old_locus_tag=C9E96_04675
NZ_PYJX01000052.1	Protein Homology	CDS	160	696	.	+	0	ID=cds-WP_080204089.1;Parent=gene-C9E96_RS04570;Dbxref=GenBank:WP_080204089.1;Name=WP_080204089.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssJ;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459278.1;locus_tag=C9E96_RS04570;product=type VI secretion system lipoprotein TssJ;protein_id=WP_080204089.1;transl_table=11
NZ_PYJX01000052.1	RefSeq	gene	700	2043	.	+	.	ID=gene-C9E96_RS04575;Name=tssK;gbkey=Gene;gene=tssK;gene_biotype=protein_coding;locus_tag=C9E96_RS04575;old_locus_tag=C9E96_04680
NZ_PYJX01000052.1	Protein Homology	CDS	700	2043	.	+	0	ID=cds-WP_000118732.1;Parent=gene-C9E96_RS04575;Dbxref=GenBank:WP_000118732.1;Name=WP_000118732.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssK;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459279.1;locus_tag=C9E96_RS04575;product=type VI secretion system baseplate subunit TssK;protein_id=WP_000118732.1;transl_table=11
NZ_PYJX01000052.1	RefSeq	gene	2040	3344	.	+	.	ID=gene-C9E96_RS04580;Name=tssL;gbkey=Gene;gene=tssL;gene_biotype=protein_coding;locus_tag=C9E96_RS04580;old_locus_tag=C9E96_04685
NZ_PYJX01000052.1	Protein Homology	CDS	2040	3344	.	+	0	ID=cds-WP_000132483.1;Parent=gene-C9E96_RS04580;Dbxref=GenBank:WP_000132483.1;Name=WP_000132483.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;gene=tssL;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459280.1;locus_tag=C9E96_RS04580;product=type VI secretion system protein TssL%2C long form;protein_id=WP_000132483.1;transl_table=11
NZ_PYJX01000052.1	RefSeq	gene	3349	4122	.	+	.	ID=gene-C9E96_RS04585;Name=C9E96_RS04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04585;old_locus_tag=C9E96_04690
NZ_PYJX01000052.1	Protein Homology	CDS	3349	4122	.	+	0	ID=cds-WP_111769909.1;Parent=gene-C9E96_RS04585;Dbxref=GenBank:WP_111769909.1;Name=WP_111769909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459281.1;locus_tag=C9E96_RS04585;product=Rap1a/Tai family immunity protein;protein_id=WP_111769909.1;transl_table=11
NZ_PYJX01000052.1	RefSeq	gene	4324	4755	.	+	.	ID=gene-C9E96_RS04590;Name=sciR;gbkey=Gene;gene=sciR;gene_biotype=protein_coding;locus_tag=C9E96_RS04590;old_locus_tag=C9E96_04695
NZ_PYJX01000052.1	Protein Homology	CDS	4324	4755	.	+	0	ID=cds-WP_023166851.1;Parent=gene-C9E96_RS04590;Dbxref=GenBank:WP_023166851.1;Name=WP_023166851.1;gbkey=CDS;gene=sciR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459282.1;locus_tag=C9E96_RS04590;product=Shiga-like toxin A subunit SciR;protein_id=WP_023166851.1;transl_table=11
NZ_PYJX01000052.1	RefSeq	gene	4789	8658	.	+	.	ID=gene-C9E96_RS04595;Name=icmF;gbkey=Gene;gene=icmF;gene_biotype=protein_coding;locus_tag=C9E96_RS04595;old_locus_tag=C9E96_04700
NZ_PYJX01000052.1	Protein Homology	CDS	4789	8658	.	+	0	ID=cds-WP_135493888.1;Parent=gene-C9E96_RS04595;Dbxref=GenBank:WP_135493888.1;Name=WP_135493888.1;gbkey=CDS;gene=icmF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459283.1;locus_tag=C9E96_RS04595;product=Type VI secretion protein IcmF;protein_id=WP_135493888.1;transl_table=11
NZ_PYJX01000052.1	RefSeq	gene	8658	9036	.	+	.	ID=gene-C9E96_RS04600;Name=C9E96_RS04600;end_range=9036,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04600;old_locus_tag=C9E96_04705;partial=true
NZ_PYJX01000052.1	Protein Homology	CDS	8658	9036	.	+	0	ID=cds-WP_135493890.1;Parent=gene-C9E96_RS04600;Dbxref=GenBank:WP_135493890.1;Name=WP_135493890.1;end_range=9036,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459284.1;locus_tag=C9E96_RS04600;partial=true;product=hypothetical protein;protein_id=WP_135493890.1;transl_table=11
##sequence-region NZ_PYJX01000012.1 1 9014
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000012.1	RefSeq	region	1	9014	.	+	.	ID=NZ_PYJX01000012.1:1..9014;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000012.1	RefSeq	gene	1	816	.	+	.	ID=gene-C9E96_RS00800;Name=C9E96_RS00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00800;old_locus_tag=C9E96_00815;partial=true;start_range=.,1
NZ_PYJX01000012.1	Protein Homology	CDS	1	816	.	+	0	ID=cds-WP_210114514.1;Parent=gene-C9E96_RS00800;Dbxref=GenBank:WP_210114514.1;Name=WP_210114514.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460760.3;locus_tag=C9E96_RS00800;partial=true;product=SpoVR family protein;protein_id=WP_210114514.1;start_range=.,1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	863	1582	.	-	.	ID=gene-C9E96_RS00805;Name=fadR;gbkey=Gene;gene=fadR;gene_biotype=protein_coding;locus_tag=C9E96_RS00805;old_locus_tag=C9E96_00820
NZ_PYJX01000012.1	Protein Homology	CDS	863	1582	.	-	0	ID=cds-WP_000234826.1;Parent=gene-C9E96_RS00805;Dbxref=GenBank:WP_000234826.1;Name=WP_000234826.1;Ontology_term=GO:0006355,GO:0019217,GO:0000062,GO:0003677,GO:0003700;gbkey=CDS;gene=fadR;go_function=fatty-acyl-CoA binding|0000062||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,regulation of fatty acid metabolic process|0019217||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460761.1;locus_tag=C9E96_RS00805;product=fatty acid metabolism transcriptional regulator FadR;protein_id=WP_000234826.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	1802	3346	.	+	.	ID=gene-C9E96_RS00810;Name=nhaB;gbkey=Gene;gene=nhaB;gene_biotype=protein_coding;locus_tag=C9E96_RS00810;old_locus_tag=C9E96_00825
NZ_PYJX01000012.1	Protein Homology	CDS	1802	3346	.	+	0	ID=cds-WP_135493723.1;Parent=gene-C9E96_RS00810;Dbxref=GenBank:WP_135493723.1;Name=WP_135493723.1;Ontology_term=GO:0006814,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaB;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460762.1;locus_tag=C9E96_RS00810;product=Na(+)/H(+) antiporter NhaB;protein_id=WP_135493723.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	3488	4018	.	+	.	ID=gene-C9E96_RS00815;Name=dsbB;gbkey=Gene;gene=dsbB;gene_biotype=protein_coding;locus_tag=C9E96_RS00815;old_locus_tag=C9E96_00830
NZ_PYJX01000012.1	Protein Homology	CDS	3488	4018	.	+	0	ID=cds-WP_000943475.1;Parent=gene-C9E96_RS00815;Dbxref=GenBank:WP_000943475.1;Name=WP_000943475.1;Ontology_term=GO:0006457,GO:0015035,GO:0016020;gbkey=CDS;gene=dsbB;go_component=membrane|0016020||IEA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460763.1;locus_tag=C9E96_RS00815;product=disulfide bond formation protein DsbB;protein_id=WP_000943475.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	4127	4468	.	+	.	ID=gene-C9E96_RS00820;Name=C9E96_RS00820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00820;old_locus_tag=C9E96_00835
NZ_PYJX01000012.1	Protein Homology	CDS	4127	4468	.	+	0	ID=cds-WP_000018967.1;Parent=gene-C9E96_RS00820;Dbxref=GenBank:WP_000018967.1;Name=WP_000018967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460764.1;locus_tag=C9E96_RS00820;product=DUF1971 domain-containing protein;protein_id=WP_000018967.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	4540	4713	.	-	.	ID=gene-C9E96_RS00825;Name=C9E96_RS00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00825;old_locus_tag=C9E96_00840
NZ_PYJX01000012.1	Protein Homology	CDS	4540	4713	.	-	0	ID=cds-WP_001083582.1;Parent=gene-C9E96_RS00825;Dbxref=GenBank:WP_001083582.1;Name=WP_001083582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460765.1;locus_tag=C9E96_RS00825;product=GnsA/GnsB family addiction module toxin;protein_id=WP_001083582.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	4905	5042	.	-	.	ID=gene-C9E96_RS00830;Name=C9E96_RS00830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00830;old_locus_tag=C9E96_00845
NZ_PYJX01000012.1	Protein Homology	CDS	4905	5042	.	-	0	ID=cds-WP_001519337.1;Parent=gene-C9E96_RS00830;Dbxref=GenBank:WP_001519337.1;Name=WP_001519337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460766.1;locus_tag=C9E96_RS00830;product=hypothetical protein;protein_id=WP_001519337.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	5394	5840	.	-	.	ID=gene-C9E96_RS00835;Name=C9E96_RS00835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00835;old_locus_tag=C9E96_00850
NZ_PYJX01000012.1	Protein Homology	CDS	5394	5840	.	-	0	ID=cds-WP_001285703.1;Parent=gene-C9E96_RS00835;Dbxref=GenBank:WP_001285703.1;Name=WP_001285703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309703.5;locus_tag=C9E96_RS00835;product=YcgN family cysteine cluster protein;protein_id=WP_001285703.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	5933	6592	.	-	.	ID=gene-C9E96_RS00840;Name=C9E96_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00840;old_locus_tag=C9E96_00855
NZ_PYJX01000012.1	Protein Homology	CDS	5933	6592	.	-	0	ID=cds-WP_001537367.1;Parent=gene-C9E96_RS00840;Dbxref=GenBank:WP_001537367.1;Name=WP_001537367.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460768.1;locus_tag=C9E96_RS00840;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_001537367.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	6642	6935	.	-	.	ID=gene-C9E96_RS00845;Name=C9E96_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00845;old_locus_tag=C9E96_00860
NZ_PYJX01000012.1	Protein Homology	CDS	6642	6935	.	-	0	ID=cds-WP_135493725.1;Parent=gene-C9E96_RS00845;Dbxref=GenBank:WP_135493725.1;Name=WP_135493725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309701.2;locus_tag=C9E96_RS00845;product=YcgL domain-containing protein;protein_id=WP_135493725.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	7061	7768	.	+	.	ID=gene-C9E96_RS00850;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=C9E96_RS00850;old_locus_tag=C9E96_00865
NZ_PYJX01000012.1	Protein Homology	CDS	7061	7768	.	+	0	ID=cds-WP_000072527.1;Parent=gene-C9E96_RS00850;Dbxref=GenBank:WP_000072527.1;Name=WP_000072527.1;Ontology_term=GO:0000918,GO:1901891,GO:0004857;gbkey=CDS;gene=minC;go_function=enzyme inhibitor activity|0004857||IEA;go_process=division septum site selection|0000918||IEA,regulation of cell septum assembly|1901891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460770.1;locus_tag=C9E96_RS00850;product=septum site-determining protein MinC;protein_id=WP_000072527.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	7792	8604	.	+	.	ID=gene-C9E96_RS00855;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=C9E96_RS00855;old_locus_tag=C9E96_00870
NZ_PYJX01000012.1	Protein Homology	CDS	7792	8604	.	+	0	ID=cds-WP_000101047.1;Parent=gene-C9E96_RS00855;Dbxref=GenBank:WP_000101047.1;Name=WP_000101047.1;gbkey=CDS;gene=minD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020801817.1;locus_tag=C9E96_RS00855;product=septum site-determining protein MinD;protein_id=WP_000101047.1;transl_table=11
NZ_PYJX01000012.1	RefSeq	gene	8608	8874	.	+	.	ID=gene-C9E96_RS00860;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=C9E96_RS00860;old_locus_tag=C9E96_00875
NZ_PYJX01000012.1	Protein Homology	CDS	8608	8874	.	+	0	ID=cds-WP_001185666.1;Parent=gene-C9E96_RS00860;Dbxref=GenBank:WP_001185666.1;Name=WP_001185666.1;Ontology_term=GO:0032955;gbkey=CDS;gene=minE;go_process=regulation of division septum assembly|0032955||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460772.1;locus_tag=C9E96_RS00860;product=cell division topological specificity factor MinE;protein_id=WP_001185666.1;transl_table=11
##sequence-region NZ_PYJX01000211.1 1 8892
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000211.1	RefSeq	region	1	8892	.	+	.	ID=NZ_PYJX01000211.1:1..8892;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000211.1	RefSeq	gene	457	1863	.	+	.	ID=gene-C9E96_RS21025;Name=chiP;gbkey=Gene;gene=chiP;gene_biotype=protein_coding;locus_tag=C9E96_RS21025;old_locus_tag=C9E96_21555
NZ_PYJX01000211.1	Protein Homology	CDS	457	1863	.	+	0	ID=cds-WP_001258803.1;Parent=gene-C9E96_RS21025;Dbxref=GenBank:WP_001258803.1;Name=WP_001258803.1;Ontology_term=GO:0015774,GO:0052778,GO:0015288;gbkey=CDS;gene=chiP;go_function=porin activity|0015288||IEA;go_process=polysaccharide transport|0015774||IEA,diacetylchitobiose metabolic process|0052778||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459672.1;locus_tag=C9E96_RS21025;product=chitoporin ChiP;protein_id=WP_001258803.1;transl_table=11
NZ_PYJX01000211.1	RefSeq	gene	1913	2245	.	+	.	ID=gene-C9E96_RS21030;Name=chiQ;gbkey=Gene;gene=chiQ;gene_biotype=protein_coding;locus_tag=C9E96_RS21030;old_locus_tag=C9E96_21560
NZ_PYJX01000211.1	Protein Homology	CDS	1913	2245	.	+	0	ID=cds-WP_000722258.1;Parent=gene-C9E96_RS21030;Dbxref=GenBank:WP_000722258.1;Name=WP_000722258.1;gbkey=CDS;gene=chiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459673.1;locus_tag=C9E96_RS21030;product=ChiQ/YbfN family lipoprotein;protein_id=WP_000722258.1;transl_table=11
NZ_PYJX01000211.1	RefSeq	gene	2294	3598	.	-	.	ID=gene-C9E96_RS21035;Name=tcuC;gbkey=Gene;gene=tcuC;gene_biotype=protein_coding;locus_tag=C9E96_RS21035;old_locus_tag=C9E96_21565
NZ_PYJX01000211.1	Protein Homology	CDS	2294	3598	.	-	0	ID=cds-WP_000057014.1;Parent=gene-C9E96_RS21035;Dbxref=GenBank:WP_000057014.1;Name=WP_000057014.1;gbkey=CDS;gene=tcuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459674.1;locus_tag=C9E96_RS21035;product=tricarballylate/proton symporter TcuC;protein_id=WP_000057014.1;transl_table=11
NZ_PYJX01000211.1	RefSeq	gene	3649	4788	.	-	.	ID=gene-C9E96_RS21040;Name=tcuB;gbkey=Gene;gene=tcuB;gene_biotype=protein_coding;locus_tag=C9E96_RS21040;old_locus_tag=C9E96_21570
NZ_PYJX01000211.1	Protein Homology	CDS	3649	4788	.	-	0	ID=cds-WP_080203769.1;Parent=gene-C9E96_RS21040;Dbxref=GenBank:WP_080203769.1;Name=WP_080203769.1;gbkey=CDS;gene=tcuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459675.1;locus_tag=C9E96_RS21040;product=tricarballylate utilization protein TcuB;protein_id=WP_080203769.1;transl_table=11
NZ_PYJX01000211.1	RefSeq	gene	4775	6178	.	-	.	ID=gene-C9E96_RS21045;Name=tcuA;gbkey=Gene;gene=tcuA;gene_biotype=protein_coding;locus_tag=C9E96_RS21045;old_locus_tag=C9E96_21575
NZ_PYJX01000211.1	Protein Homology	CDS	4775	6178	.	-	0	ID=cds-WP_079802363.1;Parent=gene-C9E96_RS21045;Dbxref=GenBank:WP_079802363.1;Name=WP_079802363.1;gbkey=CDS;gene=tcuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459676.1;locus_tag=C9E96_RS21045;product=FAD-dependent tricarballylate dehydrogenase TcuA;protein_id=WP_079802363.1;transl_table=11
NZ_PYJX01000211.1	RefSeq	gene	6276	7202	.	-	.	ID=gene-C9E96_RS21050;Name=tcuR;gbkey=Gene;gene=tcuR;gene_biotype=protein_coding;locus_tag=C9E96_RS21050;old_locus_tag=C9E96_21580
NZ_PYJX01000211.1	Protein Homology	CDS	6276	7202	.	-	0	ID=cds-WP_000423371.1;Parent=gene-C9E96_RS21050;Dbxref=GenBank:WP_000423371.1;Name=WP_000423371.1;gbkey=CDS;gene=tcuR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459677.1;locus_tag=C9E96_RS21050;product=tricarballylate utilization LysR family transcriptional regulator TcuR;protein_id=WP_000423371.1;transl_table=11
NZ_PYJX01000211.1	RefSeq	gene	7317	7769	.	-	.	ID=gene-C9E96_RS21055;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=C9E96_RS21055;old_locus_tag=C9E96_21585
NZ_PYJX01000211.1	Protein Homology	CDS	7317	7769	.	-	0	ID=cds-WP_000131699.1;Parent=gene-C9E96_RS21055;Dbxref=GenBank:WP_000131699.1;Name=WP_000131699.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=fur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459678.1;locus_tag=C9E96_RS21055;product=ferric iron uptake transcriptional regulator;protein_id=WP_000131699.1;transl_table=11
NZ_PYJX01000211.1	RefSeq	pseudogene	7762	7847	.	-	.	ID=gene-C9E96_RS24090;Name=C9E96_RS24090;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24090;pseudo=true
NZ_PYJX01000211.1	Protein Homology	CDS	7762	7847	.	-	0	ID=cds-C9E96_RS24090;Parent=gene-C9E96_RS24090;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001491546.1;locus_tag=C9E96_RS24090;product=fur leader peptide;pseudo=true;transl_table=11
NZ_PYJX01000211.1	RefSeq	gene	8051	8581	.	-	.	ID=gene-C9E96_RS21060;Name=fldA;gbkey=Gene;gene=fldA;gene_biotype=protein_coding;locus_tag=C9E96_RS21060;old_locus_tag=C9E96_21590
NZ_PYJX01000211.1	Protein Homology	CDS	8051	8581	.	-	0	ID=cds-WP_001018621.1;Parent=gene-C9E96_RS21060;Dbxref=GenBank:WP_001018621.1;Name=WP_001018621.1;gbkey=CDS;gene=fldA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459679.1;locus_tag=C9E96_RS21060;product=flavodoxin FldA;protein_id=WP_001018621.1;transl_table=11
NZ_PYJX01000211.1	RefSeq	gene	8732	8892	.	-	.	ID=gene-C9E96_RS21065;Name=C9E96_RS21065;end_range=8892,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21065;old_locus_tag=C9E96_21595;partial=true
NZ_PYJX01000211.1	Protein Homology	CDS	8732	8892	.	-	2	ID=cds-WP_135494575.1;Parent=gene-C9E96_RS21065;Dbxref=GenBank:WP_135494575.1;Name=WP_135494575.1;Ontology_term=GO:0006355;end_range=8892,.;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459680.1;locus_tag=C9E96_RS21065;partial=true;product=ribbon-helix-helix protein%2C CopG family;protein_id=WP_135494575.1;transl_table=11
##sequence-region NZ_PYJX01000111.1 1 8499
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000111.1	RefSeq	region	1	8499	.	+	.	ID=NZ_PYJX01000111.1:1..8499;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000111.1	RefSeq	gene	1	542	.	+	.	ID=gene-C9E96_RS09370;Name=C9E96_RS09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09370;old_locus_tag=C9E96_09580;partial=true;start_range=.,1
NZ_PYJX01000111.1	Protein Homology	CDS	1	542	.	+	2	ID=cds-WP_135494142.1;Parent=gene-C9E96_RS09370;Dbxref=GenBank:WP_135494142.1;Name=WP_135494142.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462461.1;locus_tag=C9E96_RS09370;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_135494142.1;start_range=.,1;transl_table=11
NZ_PYJX01000111.1	RefSeq	gene	673	894	.	+	.	ID=gene-C9E96_RS09375;Name=C9E96_RS09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09375;old_locus_tag=C9E96_09585
NZ_PYJX01000111.1	Protein Homology	CDS	673	894	.	+	0	ID=cds-WP_023993856.1;Parent=gene-C9E96_RS09375;Dbxref=GenBank:WP_023993856.1;Name=WP_023993856.1;Ontology_term=GO:0006355,GO:0045927,GO:0003677,GO:0097351,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=DNA binding|0003677||IEA,toxin sequestering activity|0097351||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,positive regulation of growth|0045927||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229268.1;locus_tag=C9E96_RS09375;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_023993856.1;transl_table=11
NZ_PYJX01000111.1	RefSeq	gene	891	1259	.	+	.	ID=gene-C9E96_RS09380;Name=C9E96_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09380;old_locus_tag=C9E96_09590
NZ_PYJX01000111.1	Protein Homology	CDS	891	1259	.	+	0	ID=cds-WP_023202025.1;Parent=gene-C9E96_RS09380;Dbxref=GenBank:WP_023202025.1;Name=WP_023202025.1;Ontology_term=GO:0016301,GO:0090729,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=kinase activity|0016301||IEA,toxin activity|0090729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462459.1;locus_tag=C9E96_RS09380;product=type II toxin-antitoxin system death-on-curing family toxin;protein_id=WP_023202025.1;transl_table=11
NZ_PYJX01000111.1	RefSeq	gene	1518	2834	.	+	.	ID=gene-C9E96_RS09385;Name=ugpB;gbkey=Gene;gene=ugpB;gene_biotype=protein_coding;locus_tag=C9E96_RS09385;old_locus_tag=C9E96_09595
NZ_PYJX01000111.1	Protein Homology	CDS	1518	2834	.	+	0	ID=cds-WP_023993857.1;Parent=gene-C9E96_RS09385;Dbxref=GenBank:WP_023993857.1;Name=WP_023993857.1;Ontology_term=GO:0055085;gbkey=CDS;gene=ugpB;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462458.1;locus_tag=C9E96_RS09385;product=sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB;protein_id=WP_023993857.1;transl_table=11
NZ_PYJX01000111.1	RefSeq	gene	2939	3826	.	+	.	ID=gene-C9E96_RS09390;Name=ugpA;gbkey=Gene;gene=ugpA;gene_biotype=protein_coding;locus_tag=C9E96_RS09390;old_locus_tag=C9E96_09600
NZ_PYJX01000111.1	Protein Homology	CDS	2939	3826	.	+	0	ID=cds-WP_000099303.1;Parent=gene-C9E96_RS09390;Dbxref=GenBank:WP_000099303.1;Name=WP_000099303.1;gbkey=CDS;gene=ugpA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000099274.1;locus_tag=C9E96_RS09390;product=sn-glycerol-3-phosphate ABC transporter permease UgpA;protein_id=WP_000099303.1;transl_table=11
NZ_PYJX01000111.1	RefSeq	gene	3823	4668	.	+	.	ID=gene-C9E96_RS09395;Name=ugpE;gbkey=Gene;gene=ugpE;gene_biotype=protein_coding;locus_tag=C9E96_RS09395;old_locus_tag=C9E96_09605
NZ_PYJX01000111.1	Protein Homology	CDS	3823	4668	.	+	0	ID=cds-WP_000572196.1;Parent=gene-C9E96_RS09395;Dbxref=GenBank:WP_000572196.1;Name=WP_000572196.1;Ontology_term=GO:0015794,GO:0005886,GO:0055052;gbkey=CDS;gene=ugpE;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_process=glycerol-3-phosphate transmembrane transport|0015794||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000572177.1;locus_tag=C9E96_RS09395;product=sn-glycerol-3-phosphate ABC transporter permease UgpE;protein_id=WP_000572196.1;transl_table=11
NZ_PYJX01000111.1	RefSeq	gene	4670	5740	.	+	.	ID=gene-C9E96_RS09400;Name=C9E96_RS09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09400;old_locus_tag=C9E96_09610
NZ_PYJX01000111.1	Protein Homology	CDS	4670	5740	.	+	0	ID=cds-WP_000907842.1;Parent=gene-C9E96_RS09400;Dbxref=GenBank:WP_000907842.1;Name=WP_000907842.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462455.1;locus_tag=C9E96_RS09400;product=sn-glycerol-3-phosphate import ATP-binding protein UgpC;protein_id=WP_000907842.1;transl_table=11
NZ_PYJX01000111.1	RefSeq	gene	5737	6477	.	+	.	ID=gene-C9E96_RS09405;Name=ugpQ;gbkey=Gene;gene=ugpQ;gene_biotype=protein_coding;locus_tag=C9E96_RS09405;old_locus_tag=C9E96_09615
NZ_PYJX01000111.1	Protein Homology	CDS	5737	6477	.	+	0	ID=cds-WP_135494144.1;Parent=gene-C9E96_RS09405;Dbxref=GenBank:WP_135494144.1;Name=WP_135494144.1;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;gene=ugpQ;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462454.1;locus_tag=C9E96_RS09405;product=glycerophosphodiester phosphodiesterase;protein_id=WP_135494144.1;transl_table=11
NZ_PYJX01000111.1	RefSeq	gene	6490	6906	.	-	.	ID=gene-C9E96_RS09410;Name=C9E96_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09410;old_locus_tag=C9E96_09620
NZ_PYJX01000111.1	Protein Homology	CDS	6490	6906	.	-	0	ID=cds-WP_000826042.1;Parent=gene-C9E96_RS09410;Dbxref=GenBank:WP_000826042.1;Name=WP_000826042.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462453.1;locus_tag=C9E96_RS09410;product=DUF2756 family protein;protein_id=WP_000826042.1;transl_table=11
NZ_PYJX01000111.1	RefSeq	gene	7032	8499	.	+	.	ID=gene-C9E96_RS09415;Name=ggt;end_range=8499,.;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=C9E96_RS09415;old_locus_tag=C9E96_09625;partial=true
NZ_PYJX01000111.1	Protein Homology	CDS	7032	8499	.	+	0	ID=cds-WP_135494146.1;Parent=gene-C9E96_RS09415;Dbxref=GenBank:WP_135494146.1;Name=WP_135494146.1;Ontology_term=GO:0006751,GO:0036374;end_range=8499,.;gbkey=CDS;gene=ggt;go_function=glutathione hydrolase activity|0036374||IEA;go_process=glutathione catabolic process|0006751||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462452.1;locus_tag=C9E96_RS09415;partial=true;product=gamma-glutamyltransferase;protein_id=WP_135494146.1;transl_table=11
##sequence-region NZ_PYJX01000100.1 1 8403
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000100.1	RefSeq	region	1	8403	.	+	.	ID=NZ_PYJX01000100.1:1..8403;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000100.1	RefSeq	gene	1	599	.	+	.	ID=gene-C9E96_RS08735;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=C9E96_RS08735;old_locus_tag=C9E96_08925;partial=true;start_range=.,1
NZ_PYJX01000100.1	Protein Homology	CDS	1	599	.	+	2	ID=cds-WP_135494086.1;Parent=gene-C9E96_RS08735;Dbxref=GenBank:WP_135494086.1;Name=WP_135494086.1;Ontology_term=GO:0033014,GO:0003824,GO:0004655,GO:0046872;gbkey=CDS;gene=hemB;go_function=catalytic activity|0003824||IEA,porphobilinogen synthase activity|0004655||IEA,metal ion binding|0046872||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459367.1;locus_tag=C9E96_RS08735;partial=true;product=porphobilinogen synthase;protein_id=WP_135494086.1;start_range=.,1;transl_table=11
NZ_PYJX01000100.1	RefSeq	gene	703	2589	.	-	.	ID=gene-C9E96_RS08740;Name=prpE;gbkey=Gene;gene=prpE;gene_biotype=protein_coding;locus_tag=C9E96_RS08740;old_locus_tag=C9E96_08930
NZ_PYJX01000100.1	Protein Homology	CDS	703	2589	.	-	0	ID=cds-WP_135494088.1;Parent=gene-C9E96_RS08740;Dbxref=GenBank:WP_135494088.1;Name=WP_135494088.1;Ontology_term=GO:0019629,GO:0050218;gbkey=CDS;gene=prpE;go_function=propionate-CoA ligase activity|0050218||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459366.1;locus_tag=C9E96_RS08740;product=propionate--CoA ligase;protein_id=WP_135494088.1;transl_table=11
NZ_PYJX01000100.1	RefSeq	gene	2630	4081	.	-	.	ID=gene-C9E96_RS08745;Name=C9E96_RS08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08745;old_locus_tag=C9E96_08935
NZ_PYJX01000100.1	Protein Homology	CDS	2630	4081	.	-	0	ID=cds-WP_000107067.1;Parent=gene-C9E96_RS08745;Dbxref=GenBank:WP_000107067.1;Name=WP_000107067.1;Ontology_term=GO:0019679,GO:0047547,GO:0051537;gbkey=CDS;go_function=2-methylcitrate dehydratase activity|0047547||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=propionate metabolic process%2C methylcitrate cycle|0019679||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459365.1;locus_tag=C9E96_RS08745;product=bifunctional 2-methylcitrate dehydratase/aconitate hydratase;protein_id=WP_000107067.1;transl_table=11
NZ_PYJX01000100.1	RefSeq	gene	4121	5290	.	-	.	ID=gene-C9E96_RS08750;Name=prpC;gbkey=Gene;gene=prpC;gene_biotype=protein_coding;locus_tag=C9E96_RS08750;old_locus_tag=C9E96_08940
NZ_PYJX01000100.1	Protein Homology	CDS	4121	5290	.	-	0	ID=cds-WP_000132746.1;Parent=gene-C9E96_RS08750;Dbxref=GenBank:WP_000132746.1;Name=WP_000132746.1;Ontology_term=GO:0019679,GO:0004108,GO:0050440;gbkey=CDS;gene=prpC;go_function=citrate (Si)-synthase activity|0004108||IEA,2-methylcitrate synthase activity|0050440||IEA;go_process=propionate metabolic process%2C methylcitrate cycle|0019679||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459364.1;locus_tag=C9E96_RS08750;product=bifunctional 2-methylcitrate synthase/citrate synthase;protein_id=WP_000132746.1;transl_table=11
NZ_PYJX01000100.1	RefSeq	gene	5413	6300	.	-	.	ID=gene-C9E96_RS08755;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=protein_coding;locus_tag=C9E96_RS08755;old_locus_tag=C9E96_08945
NZ_PYJX01000100.1	Protein Homology	CDS	5413	6300	.	-	0	ID=cds-WP_000052221.1;Parent=gene-C9E96_RS08755;Dbxref=GenBank:WP_000052221.1;Name=WP_000052221.1;Ontology_term=GO:0019629,GO:0046421;gbkey=CDS;gene=prpB;go_function=methylisocitrate lyase activity|0046421||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459363.1;locus_tag=C9E96_RS08755;product=methylisocitrate lyase;protein_id=WP_000052221.1;transl_table=11
NZ_PYJX01000100.1	RefSeq	gene	6566	8191	.	+	.	ID=gene-C9E96_RS08760;Name=prpR;gbkey=Gene;gene=prpR;gene_biotype=protein_coding;locus_tag=C9E96_RS08760;old_locus_tag=C9E96_08950
NZ_PYJX01000100.1	Protein Homology	CDS	6566	8191	.	+	0	ID=cds-WP_135494090.1;Parent=gene-C9E96_RS08760;Dbxref=GenBank:WP_135494090.1;Name=WP_135494090.1;gbkey=CDS;gene=prpR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459362.1;locus_tag=C9E96_RS08760;product=propionate catabolism operon regulatory protein PrpR;protein_id=WP_135494090.1;transl_table=11
##sequence-region NZ_PYJX01000115.1 1 7764
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000115.1	RefSeq	region	1	7764	.	+	.	ID=NZ_PYJX01000115.1:1..7764;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000115.1	RefSeq	pseudogene	1	147	.	-	.	ID=gene-C9E96_RS09690;Name=C9E96_RS09690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS09690;old_locus_tag=C9E96_09910;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000115.1	Protein Homology	CDS	1	147	.	-	0	ID=cds-C9E96_RS09690;Parent=gene-C9E96_RS09690;Note=catalyzes the hydrolysis of dipeptides with a proline at the C-terminal%3B also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020801804.1;locus_tag=C9E96_RS09690;partial=true;product=Xaa-Pro dipeptidase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000115.1	RefSeq	gene	337	2526	.	+	.	ID=gene-C9E96_RS09695;Name=fadB;gbkey=Gene;gene=fadB;gene_biotype=protein_coding;locus_tag=C9E96_RS09695;old_locus_tag=C9E96_09915
NZ_PYJX01000115.1	Protein Homology	CDS	337	2526	.	+	0	ID=cds-WP_135494160.1;Parent=gene-C9E96_RS09695;Dbxref=GenBank:WP_135494160.1;Name=WP_135494160.1;Ontology_term=GO:0009062,GO:0003857,GO:0004165,GO:0004300,GO:0008692,GO:0036125;gbkey=CDS;gene=fadB;go_component=fatty acid beta-oxidation multienzyme complex|0036125||IEA;go_function=3-hydroxyacyl-CoA dehydrogenase activity|0003857||IEA,delta(3)-delta(2)-enoyl-CoA isomerase activity|0004165||IEA,enoyl-CoA hydratase activity|0004300||IEA,3-hydroxybutyryl-CoA epimerase activity|0008692||IEA;go_process=fatty acid catabolic process|0009062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462868.1;locus_tag=C9E96_RS09695;product=fatty acid oxidation complex subunit alpha FadB;protein_id=WP_135494160.1;transl_table=11
NZ_PYJX01000115.1	RefSeq	gene	2536	3699	.	+	.	ID=gene-C9E96_RS09700;Name=fadA;gbkey=Gene;gene=fadA;gene_biotype=protein_coding;locus_tag=C9E96_RS09700;old_locus_tag=C9E96_09920
NZ_PYJX01000115.1	Protein Homology	CDS	2536	3699	.	+	0	ID=cds-WP_000438778.1;Parent=gene-C9E96_RS09700;Dbxref=GenBank:WP_000438778.1;Name=WP_000438778.1;Ontology_term=GO:0006631,GO:0016042,GO:0003988,GO:0005737;gbkey=CDS;gene=fadA;go_component=cytoplasm|0005737||IEA;go_function=acetyl-CoA C-acyltransferase activity|0003988||IEA;go_process=fatty acid metabolic process|0006631||IEA,lipid catabolic process|0016042||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462867.1;locus_tag=C9E96_RS09700;product=acetyl-CoA C-acyltransferase FadA;protein_id=WP_000438778.1;transl_table=11
NZ_PYJX01000115.1	RefSeq	gene	3896	5719	.	-	.	ID=gene-C9E96_RS09705;Name=C9E96_RS09705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09705;old_locus_tag=C9E96_09925
NZ_PYJX01000115.1	Protein Homology	CDS	3896	5719	.	-	0	ID=cds-WP_000669902.1;Parent=gene-C9E96_RS09705;Dbxref=GenBank:WP_000669902.1;Name=WP_000669902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000669888.1;locus_tag=C9E96_RS09705;product=aryl-sulfate sulfotransferase;protein_id=WP_000669902.1;transl_table=11
NZ_PYJX01000115.1	RefSeq	gene	5973	6674	.	-	.	ID=gene-C9E96_RS09710;Name=fre;gbkey=Gene;gene=fre;gene_biotype=protein_coding;locus_tag=C9E96_RS09710;old_locus_tag=C9E96_09930
NZ_PYJX01000115.1	Protein Homology	CDS	5973	6674	.	-	0	ID=cds-WP_000209831.1;Parent=gene-C9E96_RS09710;Dbxref=GenBank:WP_000209831.1;Name=WP_000209831.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fre;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462864.1;locus_tag=C9E96_RS09710;product=NAD(P)H-flavin reductase;protein_id=WP_000209831.1;transl_table=11
NZ_PYJX01000115.1	RefSeq	pseudogene	6760	7704	.	-	.	ID=gene-C9E96_RS09715;Name=C9E96_RS09715;end_range=7704,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS09715;old_locus_tag=C9E96_09935;partial=true;pseudo=true
NZ_PYJX01000115.1	Protein Homology	CDS	6760	7704	.	-	0	ID=cds-C9E96_RS09715;Parent=gene-C9E96_RS09715;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016831;end_range=7704,.;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462863.1;locus_tag=C9E96_RS09715;partial=true;product=UbiD family decarboxylase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000225.1 1 7715
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000225.1	RefSeq	region	1	7715	.	+	.	ID=NZ_PYJX01000225.1:1..7715;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000225.1	RefSeq	gene	122	931	.	-	.	ID=gene-C9E96_RS21975;Name=iolB;gbkey=Gene;gene=iolB;gene_biotype=protein_coding;locus_tag=C9E96_RS21975;old_locus_tag=C9E96_22515
NZ_PYJX01000225.1	Protein Homology	CDS	122	931	.	-	0	ID=cds-WP_000002010.1;Parent=gene-C9E96_RS21975;Dbxref=GenBank:WP_000002010.1;Name=WP_000002010.1;Ontology_term=GO:0019310,GO:0016861;gbkey=CDS;gene=iolB;go_function=intramolecular oxidoreductase activity%2C interconverting aldoses and ketoses|0016861||IEA;go_process=inositol catabolic process|0019310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463281.1;locus_tag=C9E96_RS21975;product=5-deoxy-glucuronate isomerase;protein_id=WP_000002010.1;transl_table=11
NZ_PYJX01000225.1	RefSeq	gene	956	2461	.	-	.	ID=gene-C9E96_RS21980;Name=iolA;gbkey=Gene;gene=iolA;gene_biotype=protein_coding;locus_tag=C9E96_RS21980;old_locus_tag=C9E96_22520
NZ_PYJX01000225.1	Protein Homology	CDS	956	2461	.	-	0	ID=cds-WP_000450729.1;Parent=gene-C9E96_RS21980;Dbxref=GenBank:WP_000450729.1;Name=WP_000450729.1;gbkey=CDS;gene=iolA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463282.1;locus_tag=C9E96_RS21980;product=malonate-semialdehyde dehydrogenase IolA;protein_id=WP_000450729.1;transl_table=11
NZ_PYJX01000225.1	RefSeq	gene	2477	2779	.	-	.	ID=gene-C9E96_RS21985;Name=C9E96_RS21985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21985;old_locus_tag=C9E96_22525
NZ_PYJX01000225.1	Protein Homology	CDS	2477	2779	.	-	0	ID=cds-WP_071790412.1;Parent=gene-C9E96_RS21985;Dbxref=GenBank:WP_071790412.1;Name=WP_071790412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453693.1;locus_tag=C9E96_RS21985;product=hypothetical protein;protein_id=WP_071790412.1;transl_table=11
NZ_PYJX01000225.1	RefSeq	gene	2902	3726	.	+	.	ID=gene-C9E96_RS21990;Name=reiD;gbkey=Gene;gene=reiD;gene_biotype=protein_coding;locus_tag=C9E96_RS21990;old_locus_tag=C9E96_22530
NZ_PYJX01000225.1	Protein Homology	CDS	2902	3726	.	+	0	ID=cds-WP_000332219.1;Parent=gene-C9E96_RS21990;Dbxref=GenBank:WP_000332219.1;Name=WP_000332219.1;gbkey=CDS;gene=reiD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000332219.1;locus_tag=C9E96_RS21990;product=myo-inositol utilization transcriptional regulator ReiD;protein_id=WP_000332219.1;transl_table=11
NZ_PYJX01000225.1	RefSeq	gene	3985	4905	.	+	.	ID=gene-C9E96_RS21995;Name=iolE;gbkey=Gene;gene=iolE;gene_biotype=protein_coding;locus_tag=C9E96_RS21995;old_locus_tag=C9E96_22535
NZ_PYJX01000225.1	Protein Homology	CDS	3985	4905	.	+	0	ID=cds-WP_012601329.1;Parent=gene-C9E96_RS21995;Dbxref=GenBank:WP_012601329.1;Name=WP_012601329.1;Ontology_term=GO:0019310,GO:0050114;gbkey=CDS;gene=iolE;go_function=myo-inosose-2 dehydratase activity|0050114||IEA;go_process=inositol catabolic process|0019310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463285.3;locus_tag=C9E96_RS21995;product=myo-inosose-2 dehydratase;protein_id=WP_012601329.1;transl_table=11
NZ_PYJX01000225.1	RefSeq	gene	4924	5934	.	+	.	ID=gene-C9E96_RS22000;Name=iolG1;gbkey=Gene;gene=iolG1;gene_biotype=protein_coding;locus_tag=C9E96_RS22000;old_locus_tag=C9E96_22540
NZ_PYJX01000225.1	Protein Homology	CDS	4924	5934	.	+	0	ID=cds-WP_000172704.1;Parent=gene-C9E96_RS22000;Dbxref=GenBank:WP_000172704.1;Name=WP_000172704.1;gbkey=CDS;gene=iolG1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463286.1;locus_tag=C9E96_RS22000;product=inositol 2-dehydrogenase IolG1;protein_id=WP_000172704.1;transl_table=11
NZ_PYJX01000225.1	RefSeq	gene	6032	7375	.	+	.	ID=gene-C9E96_RS22005;Name=srfJ;gbkey=Gene;gene=srfJ;gene_biotype=protein_coding;locus_tag=C9E96_RS22005;old_locus_tag=C9E96_22545
NZ_PYJX01000225.1	Protein Homology	CDS	6032	7375	.	+	0	ID=cds-WP_023250006.1;Parent=gene-C9E96_RS22005;Dbxref=GenBank:WP_023250006.1;Name=WP_023250006.1;gbkey=CDS;gene=srfJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463287.1;locus_tag=C9E96_RS22005;product=lysosomal glucosyl ceramidase-like type III secretion effector SrfJ;protein_id=WP_023250006.1;transl_table=11
NZ_PYJX01000225.1	RefSeq	pseudogene	7376	7715	.	+	.	ID=gene-C9E96_RS22010;Name=C9E96_RS22010;end_range=7715,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS22010;old_locus_tag=C9E96_22550;partial=true;pseudo=true
NZ_PYJX01000225.1	Protein Homology	CDS	7376	7715	.	+	0	ID=cds-C9E96_RS22010;Parent=gene-C9E96_RS22010;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=7715,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463288.1;locus_tag=C9E96_RS22010;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000075.1 1 7668
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000075.1	RefSeq	region	1	7668	.	+	.	ID=NZ_PYJX01000075.1:1..7668;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000075.1	RefSeq	gene	1	1921	.	+	.	ID=gene-C9E96_RS06465;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;locus_tag=C9E96_RS06465;old_locus_tag=C9E96_06620;partial=true;start_range=.,1
NZ_PYJX01000075.1	Protein Homology	CDS	1	1921	.	+	1	ID=cds-WP_135493991.1;Parent=gene-C9E96_RS06465;Dbxref=GenBank:WP_135493991.1;Name=WP_135493991.1;Ontology_term=GO:0016070,GO:0004540;gbkey=CDS;gene=rnr;go_function=RNA nuclease activity|0004540||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463229.1;locus_tag=C9E96_RS06465;partial=true;product=ribonuclease R;protein_id=WP_135493991.1;start_range=.,1;transl_table=11
NZ_PYJX01000075.1	RefSeq	gene	2012	2743	.	+	.	ID=gene-C9E96_RS06470;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=C9E96_RS06470;old_locus_tag=C9E96_06625
NZ_PYJX01000075.1	Protein Homology	CDS	2012	2743	.	+	0	ID=cds-WP_080203662.1;Parent=gene-C9E96_RS06470;Dbxref=GenBank:WP_080203662.1;Name=WP_080203662.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463230.1;locus_tag=C9E96_RS06470;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_080203662.1;transl_table=11
NZ_PYJX01000075.1	RefSeq	gene	2875	3279	.	+	.	ID=gene-C9E96_RS06475;Name=C9E96_RS06475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06475;old_locus_tag=C9E96_06630
NZ_PYJX01000075.1	Protein Homology	CDS	2875	3279	.	+	0	ID=cds-WP_000312605.1;Parent=gene-C9E96_RS06475;Dbxref=GenBank:WP_000312605.1;Name=WP_000312605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463231.1;locus_tag=C9E96_RS06475;product=YjfI family protein;protein_id=WP_000312605.1;transl_table=11
NZ_PYJX01000075.1	RefSeq	gene	3294	3992	.	+	.	ID=gene-C9E96_RS06480;Name=C9E96_RS06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06480;old_locus_tag=C9E96_06635
NZ_PYJX01000075.1	Protein Homology	CDS	3294	3992	.	+	0	ID=cds-WP_000511974.1;Parent=gene-C9E96_RS06480;Dbxref=GenBank:WP_000511974.1;Name=WP_000511974.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463232.1;locus_tag=C9E96_RS06480;product=PspA/IM30 family protein;protein_id=WP_000511974.1;transl_table=11
NZ_PYJX01000075.1	RefSeq	pseudogene	3992	5062	.	+	.	ID=gene-C9E96_RS06485;Name=C9E96_RS06485;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS06485;old_locus_tag=C9E96_06640;pseudo=true
NZ_PYJX01000075.1	Protein Homology	CDS	3992	5062	.	+	0	ID=cds-C9E96_RS06485;Parent=gene-C9E96_RS06485;Note=internal stop;Ontology_term=GO:0034220,GO:0071805,GO:0005216,GO:0005267,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=monoatomic ion channel activity|0005216||IEA,potassium channel activity|0005267||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA,potassium ion transmembrane transport|0071805||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463233.1;locus_tag=C9E96_RS06485;product=potassium channel family protein;pseudo=true;transl_table=11
NZ_PYJX01000075.1	RefSeq	gene	5035	5718	.	+	.	ID=gene-C9E96_RS06490;Name=C9E96_RS06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06490;old_locus_tag=C9E96_06645
NZ_PYJX01000075.1	Protein Homology	CDS	5035	5718	.	+	0	ID=cds-WP_135493993.1;Parent=gene-C9E96_RS06490;Dbxref=GenBank:WP_135493993.1;Name=WP_135493993.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463234.3;locus_tag=C9E96_RS06490;product=YjfK family protein;protein_id=WP_135493993.1;transl_table=11
NZ_PYJX01000075.1	RefSeq	gene	5736	6134	.	+	.	ID=gene-C9E96_RS06495;Name=C9E96_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06495;old_locus_tag=C9E96_06650
NZ_PYJX01000075.1	Protein Homology	CDS	5736	6134	.	+	0	ID=cds-WP_000547737.1;Parent=gene-C9E96_RS06495;Dbxref=GenBank:WP_000547737.1;Name=WP_000547737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463235.1;locus_tag=C9E96_RS06495;product=DUF350 domain-containing protein;protein_id=WP_000547737.1;transl_table=11
NZ_PYJX01000075.1	RefSeq	gene	6144	6782	.	+	.	ID=gene-C9E96_RS06500;Name=C9E96_RS06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06500;old_locus_tag=C9E96_06655
NZ_PYJX01000075.1	Protein Homology	CDS	6144	6782	.	+	0	ID=cds-WP_001085596.1;Parent=gene-C9E96_RS06500;Dbxref=GenBank:WP_001085596.1;Name=WP_001085596.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463236.1;locus_tag=C9E96_RS06500;product=DUF1190 domain-containing protein;protein_id=WP_001085596.1;transl_table=11
NZ_PYJX01000075.1	RefSeq	gene	6785	7668	.	+	.	ID=gene-C9E96_RS06505;Name=C9E96_RS06505;end_range=7668,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06505;old_locus_tag=C9E96_06660;partial=true
NZ_PYJX01000075.1	Protein Homology	CDS	6785	7668	.	+	0	ID=cds-WP_135493995.1;Parent=gene-C9E96_RS06505;Dbxref=GenBank:WP_135493995.1;Name=WP_135493995.1;Ontology_term=GO:0005524,GO:0016874,GO:0046872;end_range=7668,.;gbkey=CDS;go_function=ATP binding|0005524||IEA,ligase activity|0016874||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463237.1;locus_tag=C9E96_RS06505;partial=true;product=glutathionylspermidine synthase family protein;protein_id=WP_135493995.1;transl_table=11
##sequence-region NZ_PYJX01000142.1 1 51999
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000142.1	RefSeq	region	1	51999	.	+	.	ID=NZ_PYJX01000142.1:1..51999;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000142.1	RefSeq	gene	1	1970	.	+	.	ID=gene-C9E96_RS12390;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=C9E96_RS12390;old_locus_tag=C9E96_12695;partial=true;start_range=.,1
NZ_PYJX01000142.1	Protein Homology	CDS	1	1970	.	+	2	ID=cds-WP_135494253.1;Parent=gene-C9E96_RS12390;Dbxref=GenBank:WP_135494253.1;Name=WP_135494253.1;Ontology_term=GO:0006099,GO:0003994,GO:0051539,GO:0005829;gbkey=CDS;gene=acnB;go_component=cytosol|0005829||IEA;go_function=aconitate hydratase activity|0003994||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459163.1;locus_tag=C9E96_RS12390;partial=true;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=WP_135494253.1;start_range=.,1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	2010	2474	.	-	.	ID=gene-C9E96_RS12395;Name=C9E96_RS12395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12395;old_locus_tag=C9E96_12700
NZ_PYJX01000142.1	Protein Homology	CDS	2010	2474	.	-	0	ID=cds-WP_080203752.1;Parent=gene-C9E96_RS12395;Dbxref=GenBank:WP_080203752.1;Name=WP_080203752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000110434.1;locus_tag=C9E96_RS12395;product=hypothetical protein;protein_id=WP_080203752.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	2892	3215	.	-	.	ID=gene-C9E96_RS12400;Name=C9E96_RS12400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12400;old_locus_tag=C9E96_12705
NZ_PYJX01000142.1	Protein Homology	CDS	2892	3215	.	-	0	ID=cds-WP_001101535.1;Parent=gene-C9E96_RS12400;Dbxref=GenBank:WP_001101535.1;Name=WP_001101535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001101536.1;locus_tag=C9E96_RS12400;product=low molecular weight protein tyrosine phosphatase family protein;protein_id=WP_001101535.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	3486	3848	.	+	.	ID=gene-C9E96_RS12405;Name=yacL;gbkey=Gene;gene=yacL;gene_biotype=protein_coding;locus_tag=C9E96_RS12405;old_locus_tag=C9E96_12710
NZ_PYJX01000142.1	Protein Homology	CDS	3486	3848	.	+	0	ID=cds-WP_000384308.1;Parent=gene-C9E96_RS12405;Dbxref=GenBank:WP_000384308.1;Name=WP_000384308.1;gbkey=CDS;gene=yacL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459165.1;locus_tag=C9E96_RS12405;product=protein YacL;protein_id=WP_000384308.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	4083	5036	.	+	.	ID=gene-C9E96_RS12410;Name=C9E96_RS12410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12410;old_locus_tag=C9E96_12715
NZ_PYJX01000142.1	Protein Homology	CDS	4083	5036	.	+	0	ID=cds-WP_135494255.1;Parent=gene-C9E96_RS12410;Dbxref=GenBank:WP_135494255.1;Name=WP_135494255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459166.1;locus_tag=C9E96_RS12410;product=2-keto-3-deoxygluconate permease 1;protein_id=WP_135494255.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	5033	6304	.	+	.	ID=gene-C9E96_RS12415;Name=dtnK;gbkey=Gene;gene=dtnK;gene_biotype=protein_coding;locus_tag=C9E96_RS12415;old_locus_tag=C9E96_12720
NZ_PYJX01000142.1	Protein Homology	CDS	5033	6304	.	+	0	ID=cds-WP_000782195.1;Parent=gene-C9E96_RS12415;Dbxref=GenBank:WP_000782195.1;Name=WP_000782195.1;Ontology_term=GO:0005524,GO:0016301;gbkey=CDS;gene=dtnK;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459167.1;locus_tag=C9E96_RS12415;product=D-threonate kinase;protein_id=WP_000782195.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	6294	7277	.	+	.	ID=gene-C9E96_RS12420;Name=C9E96_RS12420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12420;old_locus_tag=C9E96_12725
NZ_PYJX01000142.1	Protein Homology	CDS	6294	7277	.	+	0	ID=cds-WP_080203751.1;Parent=gene-C9E96_RS12420;Dbxref=GenBank:WP_080203751.1;Name=WP_080203751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459168.1;locus_tag=C9E96_RS12420;product=D-threonate 4-phosphate dehydrogenase;protein_id=WP_080203751.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	7287	8054	.	+	.	ID=gene-C9E96_RS12425;Name=C9E96_RS12425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12425;old_locus_tag=C9E96_12730
NZ_PYJX01000142.1	Protein Homology	CDS	7287	8054	.	+	0	ID=cds-WP_000678254.1;Parent=gene-C9E96_RS12425;Dbxref=GenBank:WP_000678254.1;Name=WP_000678254.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459169.1;locus_tag=C9E96_RS12425;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000678254.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	8084	8878	.	-	.	ID=gene-C9E96_RS12430;Name=speD;gbkey=Gene;gene=speD;gene_biotype=protein_coding;locus_tag=C9E96_RS12430;old_locus_tag=C9E96_12735
NZ_PYJX01000142.1	Protein Homology	CDS	8084	8878	.	-	0	ID=cds-WP_080203750.1;Parent=gene-C9E96_RS12430;Dbxref=GenBank:WP_080203750.1;Name=WP_080203750.1;Ontology_term=GO:0008295,GO:0004014;gbkey=CDS;gene=speD;go_function=adenosylmethionine decarboxylase activity|0004014||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459170.1;locus_tag=C9E96_RS12430;product=adenosylmethionine decarboxylase;protein_id=WP_080203750.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	8899	9759	.	-	.	ID=gene-C9E96_RS12435;Name=speE;gbkey=Gene;gene=speE;gene_biotype=protein_coding;locus_tag=C9E96_RS12435;old_locus_tag=C9E96_12740
NZ_PYJX01000142.1	Protein Homology	CDS	8899	9759	.	-	0	ID=cds-WP_000829968.1;Parent=gene-C9E96_RS12435;Dbxref=GenBank:WP_000829968.1;Name=WP_000829968.1;gbkey=CDS;gene=speE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459171.1;locus_tag=C9E96_RS12435;product=polyamine aminopropyltransferase;protein_id=WP_000829968.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	9866	10213	.	-	.	ID=gene-C9E96_RS12440;Name=C9E96_RS12440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12440;old_locus_tag=C9E96_12745
NZ_PYJX01000142.1	Protein Homology	CDS	9866	10213	.	-	0	ID=cds-WP_000846613.1;Parent=gene-C9E96_RS12440;Dbxref=GenBank:WP_000846613.1;Name=WP_000846613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459172.1;locus_tag=C9E96_RS12440;product=YacC family pilotin-like protein;protein_id=WP_000846613.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	10415	12025	.	+	.	ID=gene-C9E96_RS12445;Name=cueO;gbkey=Gene;gene=cueO;gene_biotype=protein_coding;locus_tag=C9E96_RS12445;old_locus_tag=C9E96_12750
NZ_PYJX01000142.1	Protein Homology	CDS	10415	12025	.	+	0	ID=cds-WP_000946047.1;Parent=gene-C9E96_RS12445;Dbxref=GenBank:WP_000946047.1;Name=WP_000946047.1;Ontology_term=GO:0005507,GO:0016491;gbkey=CDS;gene=cueO;go_function=copper ion binding|0005507||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459173.1;locus_tag=C9E96_RS12445;product=multicopper oxidase CueO;protein_id=WP_000946047.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	12110	14500	.	-	.	ID=gene-C9E96_RS12450;Name=C9E96_RS12450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12450;old_locus_tag=C9E96_12755
NZ_PYJX01000142.1	Protein Homology	CDS	12110	14500	.	-	0	ID=cds-WP_135494257.1;Parent=gene-C9E96_RS12450;Dbxref=GenBank:WP_135494257.1;Name=WP_135494257.1;Ontology_term=GO:0016614,GO:0048038,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=oxidoreductase activity%2C acting on CH-OH group of donors|0016614||IEA,quinone binding|0048038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459174.1;locus_tag=C9E96_RS12450;product=glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase;protein_id=WP_135494257.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	14706	15242	.	+	.	ID=gene-C9E96_RS12455;Name=hpt;gbkey=Gene;gene=hpt;gene_biotype=protein_coding;locus_tag=C9E96_RS12455;old_locus_tag=C9E96_12760
NZ_PYJX01000142.1	Protein Homology	CDS	14706	15242	.	+	0	ID=cds-WP_000683342.1;Parent=gene-C9E96_RS12455;Dbxref=GenBank:WP_000683342.1;Name=WP_000683342.1;Ontology_term=GO:0006166;gbkey=CDS;gene=hpt;go_process=purine ribonucleoside salvage|0006166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004204384.1;locus_tag=C9E96_RS12455;product=hypoxanthine phosphoribosyltransferase;protein_id=WP_000683342.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	15300	15962	.	-	.	ID=gene-C9E96_RS12460;Name=can;gbkey=Gene;gene=can;gene_biotype=protein_coding;locus_tag=C9E96_RS12460;old_locus_tag=C9E96_12765
NZ_PYJX01000142.1	Protein Homology	CDS	15300	15962	.	-	0	ID=cds-WP_000651591.1;Parent=gene-C9E96_RS12460;Dbxref=GenBank:WP_000651591.1;Name=WP_000651591.1;Ontology_term=GO:0015976,GO:0004089,GO:0008270;gbkey=CDS;gene=can;go_function=carbonate dehydratase activity|0004089||IEA,zinc ion binding|0008270||IEA;go_process=carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459176.1;locus_tag=C9E96_RS12460;product=carbonate dehydratase;protein_id=WP_000651591.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	16071	16997	.	+	.	ID=gene-C9E96_RS12465;Name=C9E96_RS12465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12465;old_locus_tag=C9E96_12770
NZ_PYJX01000142.1	Protein Homology	CDS	16071	16997	.	+	0	ID=cds-WP_000150619.1;Parent=gene-C9E96_RS12465;Dbxref=GenBank:WP_000150619.1;Name=WP_000150619.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459177.1;locus_tag=C9E96_RS12465;product=ABC transporter ATP-binding protein;protein_id=WP_000150619.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	16994	17764	.	+	.	ID=gene-C9E96_RS12470;Name=C9E96_RS12470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12470;old_locus_tag=C9E96_12775
NZ_PYJX01000142.1	Protein Homology	CDS	16994	17764	.	+	0	ID=cds-WP_000983418.1;Parent=gene-C9E96_RS12470;Dbxref=GenBank:WP_000983418.1;Name=WP_000983418.1;Ontology_term=GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747261.1;locus_tag=C9E96_RS12470;product=ABC transporter permease;protein_id=WP_000983418.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	17884	18963	.	-	.	ID=gene-C9E96_RS12475;Name=C9E96_RS12475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12475;old_locus_tag=C9E96_12780
NZ_PYJX01000142.1	Protein Homology	CDS	17884	18963	.	-	0	ID=cds-WP_023993180.1;Parent=gene-C9E96_RS12475;Dbxref=GenBank:WP_023993180.1;Name=WP_023993180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459179.1;locus_tag=C9E96_RS12475;product=fimbrial protein;protein_id=WP_023993180.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	18972	21518	.	-	.	ID=gene-C9E96_RS12480;Name=C9E96_RS12480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12480;old_locus_tag=C9E96_12785
NZ_PYJX01000142.1	Protein Homology	CDS	18972	21518	.	-	0	ID=cds-WP_023993179.1;Parent=gene-C9E96_RS12480;Dbxref=GenBank:WP_023993179.1;Name=WP_023993179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459180.1;locus_tag=C9E96_RS12480;product=fimbrial outer membrane usher protein;protein_id=WP_023993179.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	21545	22228	.	-	.	ID=gene-C9E96_RS12485;Name=stiB;gbkey=Gene;gene=stiB;gene_biotype=protein_coding;locus_tag=C9E96_RS12485;old_locus_tag=C9E96_12790
NZ_PYJX01000142.1	Protein Homology	CDS	21545	22228	.	-	0	ID=cds-WP_001086414.1;Parent=gene-C9E96_RS12485;Dbxref=GenBank:WP_001086414.1;Name=WP_001086414.1;gbkey=CDS;gene=stiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459181.1;locus_tag=C9E96_RS12485;product=fimbrial biogenesis chaperone StiB;protein_id=WP_001086414.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	22276	22815	.	-	.	ID=gene-C9E96_RS12490;Name=stiA;gbkey=Gene;gene=stiA;gene_biotype=protein_coding;locus_tag=C9E96_RS12490;old_locus_tag=C9E96_12795
NZ_PYJX01000142.1	Protein Homology	CDS	22276	22815	.	-	0	ID=cds-WP_023204291.1;Parent=gene-C9E96_RS12490;Dbxref=GenBank:WP_023204291.1;Name=WP_023204291.1;gbkey=CDS;gene=stiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459182.1;locus_tag=C9E96_RS12490;product=Sti fimbria major subunit StiA;protein_id=WP_023204291.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	23186	23626	.	+	.	ID=gene-C9E96_RS12495;Name=C9E96_RS12495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12495;old_locus_tag=C9E96_12800
NZ_PYJX01000142.1	Protein Homology	CDS	23186	23626	.	+	0	ID=cds-WP_000901960.1;Parent=gene-C9E96_RS12495;Dbxref=GenBank:WP_000901960.1;Name=WP_000901960.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459183.1;locus_tag=C9E96_RS12495;product=PTS sugar transporter subunit IIA;protein_id=WP_000901960.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	23688	24917	.	+	.	ID=gene-C9E96_RS12500;Name=C9E96_RS12500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12500;old_locus_tag=C9E96_12805
NZ_PYJX01000142.1	Protein Homology	CDS	23688	24917	.	+	0	ID=cds-WP_000245316.1;Parent=gene-C9E96_RS12500;Dbxref=GenBank:WP_000245316.1;Name=WP_000245316.1;Ontology_term=GO:0005975,GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459184.1;locus_tag=C9E96_RS12500;product=polysaccharide deacetylase family protein;protein_id=WP_000245316.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	24924	25304	.	-	.	ID=gene-C9E96_RS12505;Name=panD;gbkey=Gene;gene=panD;gene_biotype=protein_coding;locus_tag=C9E96_RS12505;old_locus_tag=C9E96_12810
NZ_PYJX01000142.1	Protein Homology	CDS	24924	25304	.	-	0	ID=cds-WP_080203748.1;Parent=gene-C9E96_RS12505;Dbxref=GenBank:WP_080203748.1;Name=WP_080203748.1;Ontology_term=GO:0006523,GO:0004068;gbkey=CDS;gene=panD;go_function=aspartate 1-decarboxylase activity|0004068||IEA;go_process=alanine biosynthetic process|0006523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124704.1;locus_tag=C9E96_RS12505;product=aspartate 1-decarboxylase;protein_id=WP_080203748.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	25399	26253	.	-	.	ID=gene-C9E96_RS12510;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=C9E96_RS12510;old_locus_tag=C9E96_12815
NZ_PYJX01000142.1	Protein Homology	CDS	25399	26253	.	-	0	ID=cds-WP_080203747.1;Parent=gene-C9E96_RS12510;Dbxref=GenBank:WP_080203747.1;Name=WP_080203747.1;Ontology_term=GO:0015940,GO:0004592;gbkey=CDS;gene=panC;go_function=pantoate-beta-alanine ligase activity|0004592||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459186.1;locus_tag=C9E96_RS12510;product=pantoate--beta-alanine ligase;protein_id=WP_080203747.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	26379	27170	.	-	.	ID=gene-C9E96_RS12515;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=C9E96_RS12515;old_locus_tag=C9E96_12820
NZ_PYJX01000142.1	Protein Homology	CDS	26379	27170	.	-	0	ID=cds-WP_080203746.1;Parent=gene-C9E96_RS12515;Dbxref=GenBank:WP_080203746.1;Name=WP_080203746.1;Ontology_term=GO:0015940,GO:0003864;gbkey=CDS;gene=panB;go_function=3-methyl-2-oxobutanoate hydroxymethyltransferase activity|0003864||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000805487.1;locus_tag=C9E96_RS12515;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_080203746.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	27291	27770	.	-	.	ID=gene-C9E96_RS12520;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=C9E96_RS12520;old_locus_tag=C9E96_12825
NZ_PYJX01000142.1	Protein Homology	CDS	27291	27770	.	-	0	ID=cds-WP_080203745.1;Parent=gene-C9E96_RS12520;Dbxref=GenBank:WP_080203745.1;Name=WP_080203745.1;gbkey=CDS;gene=folK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459188.1;locus_tag=C9E96_RS12520;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_080203745.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	27767	29164	.	-	.	ID=gene-C9E96_RS12525;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=C9E96_RS12525;old_locus_tag=C9E96_12830
NZ_PYJX01000142.1	Protein Homology	CDS	27767	29164	.	-	0	ID=cds-WP_125540466.1;Parent=gene-C9E96_RS12525;Dbxref=GenBank:WP_125540466.1;Name=WP_125540466.1;Ontology_term=GO:0003723,GO:1990817;gbkey=CDS;gene=pcnB;go_function=RNA binding|0003723||IEA,poly(A) RNA polymerase activity|1990817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414685.4;locus_tag=C9E96_RS12525;product=polynucleotide adenylyltransferase PcnB;protein_id=WP_125540466.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	29326	30222	.	-	.	ID=gene-C9E96_RS12530;Name=gluQRS;gbkey=Gene;gene=gluQRS;gene_biotype=protein_coding;locus_tag=C9E96_RS12530;old_locus_tag=C9E96_12835
NZ_PYJX01000142.1	Protein Homology	CDS	29326	30222	.	-	0	ID=cds-WP_080203762.1;Parent=gene-C9E96_RS12530;Dbxref=GenBank:WP_080203762.1;Name=WP_080203762.1;Ontology_term=GO:0006400,GO:0043039,GO:0000166,GO:0004812,GO:0005524;gbkey=CDS;gene=gluQRS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA;go_process=tRNA modification|0006400||IEA,tRNA aminoacylation|0043039||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001549989.1;locus_tag=C9E96_RS12530;product=tRNA glutamyl-Q(34) synthetase GluQRS;protein_id=WP_080203762.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	30291	30746	.	-	.	ID=gene-C9E96_RS12535;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=C9E96_RS12535;old_locus_tag=C9E96_12840
NZ_PYJX01000142.1	Protein Homology	CDS	30291	30746	.	-	0	ID=cds-WP_001155232.1;Parent=gene-C9E96_RS12535;Dbxref=GenBank:WP_001155232.1;Name=WP_001155232.1;gbkey=CDS;gene=dksA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002209354.1;locus_tag=C9E96_RS12535;product=RNA polymerase-binding protein DksA;protein_id=WP_001155232.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	30923	31627	.	-	.	ID=gene-C9E96_RS12540;Name=sfsA;gbkey=Gene;gene=sfsA;gene_biotype=protein_coding;locus_tag=C9E96_RS12540;old_locus_tag=C9E96_12845
NZ_PYJX01000142.1	Protein Homology	CDS	30923	31627	.	-	0	ID=cds-WP_000899412.1;Parent=gene-C9E96_RS12540;Dbxref=GenBank:WP_000899412.1;Name=WP_000899412.1;Ontology_term=GO:0003677;gbkey=CDS;gene=sfsA;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459192.1;locus_tag=C9E96_RS12540;product=DNA/RNA nuclease SfsA;protein_id=WP_000899412.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	31644	32174	.	-	.	ID=gene-C9E96_RS12545;Name=thpR;gbkey=Gene;gene=thpR;gene_biotype=protein_coding;locus_tag=C9E96_RS12545;old_locus_tag=C9E96_12850
NZ_PYJX01000142.1	Protein Homology	CDS	31644	32174	.	-	0	ID=cds-WP_135494259.1;Parent=gene-C9E96_RS12545;Dbxref=GenBank:WP_135494259.1;Name=WP_135494259.1;Ontology_term=GO:0004113,GO:0008664;gbkey=CDS;gene=thpR;go_function=2'%2C3'-cyclic-nucleotide 3'-phosphodiesterase activity|0004113||IEA,RNA 2'%2C3'-cyclic 3'-phosphodiesterase activity|0008664||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459193.1;locus_tag=C9E96_RS12545;product=RNA 2'%2C3'-cyclic phosphodiesterase;protein_id=WP_135494259.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	pseudogene	32247	33284	.	+	.	ID=gene-C9E96_RS12550;Name=hrpB;end_range=33284,.;gbkey=Gene;gene=hrpB;gene_biotype=pseudogene;locus_tag=C9E96_RS12550;old_locus_tag=C9E96_12855;partial=true;pseudo=true
NZ_PYJX01000142.1	Protein Homology	CDS	32247	33284	.	+	0	ID=cds-C9E96_RS12550;Parent=gene-C9E96_RS12550;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004386;end_range=33284,.;gbkey=CDS;gene=hrpB;go_function=helicase activity|0004386||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308179.2;locus_tag=C9E96_RS12550;partial=true;product=ATP-dependent helicase HrpB;pseudo=true;transl_table=11
NZ_PYJX01000142.1	RefSeq	pseudogene	33278	35353	.	-	.	ID=gene-C9E96_RS12555;Name=C9E96_RS12555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS12555;old_locus_tag=C9E96_12860;partial=true;pseudo=true;start_range=.,33278
NZ_PYJX01000142.1	Protein Homology	CDS	33278	35353	.	-	0	ID=cds-C9E96_RS12555;Parent=gene-C9E96_RS12555;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461450.1;locus_tag=C9E96_RS12555;partial=true;product=adhesion domain-containing protein;pseudo=true;start_range=.,33278;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	35473	36444	.	-	.	ID=gene-C9E96_RS12560;Name=C9E96_RS12560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12560;old_locus_tag=C9E96_12865
NZ_PYJX01000142.1	Protein Homology	CDS	35473	36444	.	-	0	ID=cds-WP_080203848.1;Parent=gene-C9E96_RS12560;Dbxref=GenBank:WP_080203848.1;Name=WP_080203848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461451.1;locus_tag=C9E96_RS12560;product=SinI family autotransporter-associated protein;protein_id=WP_080203848.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	36502	38694	.	-	.	ID=gene-C9E96_RS12565;Name=sinH;gbkey=Gene;gene=sinH;gene_biotype=protein_coding;locus_tag=C9E96_RS12565;old_locus_tag=C9E96_12870
NZ_PYJX01000142.1	Protein Homology	CDS	36502	38694	.	-	0	ID=cds-WP_080203849.1;Parent=gene-C9E96_RS12565;Dbxref=GenBank:WP_080203849.1;Name=WP_080203849.1;gbkey=CDS;gene=sinH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461452.1;locus_tag=C9E96_RS12565;product=intimin-like inverse autotransporter SinH;protein_id=WP_080203849.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	39040	39261	.	-	.	ID=gene-C9E96_RS12570;Name=C9E96_RS12570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12570;old_locus_tag=C9E96_12875
NZ_PYJX01000142.1	Protein Homology	CDS	39040	39261	.	-	0	ID=cds-WP_079950079.1;Parent=gene-C9E96_RS12570;Dbxref=GenBank:WP_079950079.1;Name=WP_079950079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461453.1;locus_tag=C9E96_RS12570;product=zinc ribbon domain-containing protein;protein_id=WP_079950079.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	39350	40822	.	-	.	ID=gene-C9E96_RS12575;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=C9E96_RS12575;old_locus_tag=C9E96_12880
NZ_PYJX01000142.1	Protein Homology	CDS	39350	40822	.	-	0	ID=cds-WP_000249411.1;Parent=gene-C9E96_RS12575;Dbxref=GenBank:WP_000249411.1;Name=WP_000249411.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461454.1;locus_tag=C9E96_RS12575;product=ribosome biogenesis GTPase Der;protein_id=WP_000249411.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	40941	42119	.	-	.	ID=gene-C9E96_RS12580;Name=bamB;gbkey=Gene;gene=bamB;gene_biotype=protein_coding;locus_tag=C9E96_RS12580;old_locus_tag=C9E96_12885
NZ_PYJX01000142.1	Protein Homology	CDS	40941	42119	.	-	0	ID=cds-WP_001177072.1;Parent=gene-C9E96_RS12580;Dbxref=GenBank:WP_001177072.1;Name=WP_001177072.1;Ontology_term=GO:0005515;gbkey=CDS;gene=bamB;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461455.1;locus_tag=C9E96_RS12580;product=outer membrane protein assembly factor BamB;protein_id=WP_001177072.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	42130	42750	.	-	.	ID=gene-C9E96_RS12585;Name=C9E96_RS12585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12585;old_locus_tag=C9E96_12890
NZ_PYJX01000142.1	Protein Homology	CDS	42130	42750	.	-	0	ID=cds-WP_000409190.1;Parent=gene-C9E96_RS12585;Dbxref=GenBank:WP_000409190.1;Name=WP_000409190.1;Ontology_term=GO:0005515,GO:0044877;gbkey=CDS;go_function=protein binding|0005515||IEA,protein-containing complex binding|0044877||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461456.1;locus_tag=C9E96_RS12585;product=YfgM family protein;protein_id=WP_000409190.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	42764	44038	.	-	.	ID=gene-C9E96_RS12590;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=C9E96_RS12590;old_locus_tag=C9E96_12895
NZ_PYJX01000142.1	Protein Homology	CDS	42764	44038	.	-	0	ID=cds-WP_001107146.1;Parent=gene-C9E96_RS12590;Dbxref=GenBank:WP_001107146.1;Name=WP_001107146.1;Ontology_term=GO:0006427,GO:0004821,GO:0005524,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA,ATP binding|0005524||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461457.1;locus_tag=C9E96_RS12590;product=histidine--tRNA ligase;protein_id=WP_001107146.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	44149	45267	.	-	.	ID=gene-C9E96_RS12595;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;gene_synonym=gcpE;locus_tag=C9E96_RS12595;old_locus_tag=C9E96_12900
NZ_PYJX01000142.1	Protein Homology	CDS	44149	45267	.	-	0	ID=cds-WP_135494261.1;Parent=gene-C9E96_RS12595;Dbxref=GenBank:WP_135494261.1;Name=WP_135494261.1;Ontology_term=GO:0008152,GO:0046429;gbkey=CDS;gene=ispG;go_function=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin)|0046429||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461458.1;locus_tag=C9E96_RS12595;product=flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;protein_id=WP_135494261.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	45294	46295	.	-	.	ID=gene-C9E96_RS12600;Name=rodZ;gbkey=Gene;gene=rodZ;gene_biotype=protein_coding;locus_tag=C9E96_RS12600;old_locus_tag=C9E96_12905
NZ_PYJX01000142.1	Protein Homology	CDS	45294	46295	.	-	0	ID=cds-WP_080203850.1;Parent=gene-C9E96_RS12600;Dbxref=GenBank:WP_080203850.1;Name=WP_080203850.1;Ontology_term=GO:0008360,GO:0003677,GO:0016020;gbkey=CDS;gene=rodZ;go_component=membrane|0016020||IEA;go_function=DNA binding|0003677||IEA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461459.1;locus_tag=C9E96_RS12600;product=cytoskeleton protein RodZ;protein_id=WP_080203850.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	46587	47753	.	-	.	ID=gene-C9E96_RS12605;Name=C9E96_RS12605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12605;old_locus_tag=C9E96_12915
NZ_PYJX01000142.1	Protein Homology	CDS	46587	47753	.	-	0	ID=cds-WP_000003206.1;Parent=gene-C9E96_RS12605;Dbxref=GenBank:WP_000003206.1;Name=WP_000003206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461460.1;locus_tag=C9E96_RS12605;product=bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN;protein_id=WP_000003206.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	47960	48391	.	-	.	ID=gene-C9E96_RS12610;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=C9E96_RS12610;old_locus_tag=C9E96_12920
NZ_PYJX01000142.1	Protein Homology	CDS	47960	48391	.	-	0	ID=cds-WP_000963846.1;Parent=gene-C9E96_RS12610;Dbxref=GenBank:WP_000963846.1;Name=WP_000963846.1;Ontology_term=GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000963848.1;locus_tag=C9E96_RS12610;product=nucleoside-diphosphate kinase;protein_id=WP_000963846.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	48512	49375	.	-	.	ID=gene-C9E96_RS12615;Name=C9E96_RS12615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12615;old_locus_tag=C9E96_12925
NZ_PYJX01000142.1	Protein Homology	CDS	48512	49375	.	-	0	ID=cds-WP_080203851.1;Parent=gene-C9E96_RS12615;Dbxref=GenBank:WP_080203851.1;Name=WP_080203851.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461462.1;locus_tag=C9E96_RS12615;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_080203851.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	49375	50184	.	-	.	ID=gene-C9E96_RS12620;Name=C9E96_RS12620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12620;old_locus_tag=C9E96_12930
NZ_PYJX01000142.1	Protein Homology	CDS	49375	50184	.	-	0	ID=cds-WP_080203852.1;Parent=gene-C9E96_RS12620;Dbxref=GenBank:WP_080203852.1;Name=WP_080203852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461463.2;locus_tag=C9E96_RS12620;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_080203852.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	gene	50177	50806	.	-	.	ID=gene-C9E96_RS12625;Name=C9E96_RS12625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12625;old_locus_tag=C9E96_12935
NZ_PYJX01000142.1	Protein Homology	CDS	50177	50806	.	-	0	ID=cds-WP_000077436.1;Parent=gene-C9E96_RS12625;Dbxref=GenBank:WP_000077436.1;Name=WP_000077436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461464.1;locus_tag=C9E96_RS12625;product=DMSO/selenate family reductase complex B subunit;protein_id=WP_000077436.1;transl_table=11
NZ_PYJX01000142.1	RefSeq	pseudogene	50803	51999	.	-	.	ID=gene-C9E96_RS12630;Name=C9E96_RS12630;end_range=51999,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS12630;old_locus_tag=C9E96_12940;partial=true;pseudo=true
NZ_PYJX01000142.1	Protein Homology	CDS	50803	51999	.	-	0	ID=cds-C9E96_RS12630;Parent=gene-C9E96_RS12630;Note=internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0016491,GO:0043546;end_range=51999,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311411.1;locus_tag=C9E96_RS12630;partial=true;product=molybdopterin dinucleotide binding domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000053.1 1 7563
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000053.1	RefSeq	region	1	7563	.	+	.	ID=NZ_PYJX01000053.1:1..7563;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000053.1	RefSeq	pseudogene	1	136	.	-	.	ID=gene-C9E96_RS04605;Name=C9E96_RS04605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS04605;old_locus_tag=C9E96_04710;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000053.1	Protein Homology	CDS	1	136	.	-	0	ID=cds-C9E96_RS04605;Parent=gene-C9E96_RS04605;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461143.1;locus_tag=C9E96_RS04605;partial=true;product=MFS transporter;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000053.1	RefSeq	gene	169	1056	.	-	.	ID=gene-C9E96_RS04610;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=C9E96_RS04610;old_locus_tag=C9E96_04715
NZ_PYJX01000053.1	Protein Homology	CDS	169	1056	.	-	0	ID=cds-WP_000022908.1;Parent=gene-C9E96_RS04610;Dbxref=GenBank:WP_000022908.1;Name=WP_000022908.1;Ontology_term=GO:0006564,GO:0036424;gbkey=CDS;gene=serB;go_function=L-phosphoserine phosphatase activity|0036424||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461142.1;locus_tag=C9E96_RS04610;product=phosphoserine phosphatase SerB;protein_id=WP_000022908.1;transl_table=11
NZ_PYJX01000053.1	RefSeq	gene	1273	2640	.	+	.	ID=gene-C9E96_RS04615;Name=C9E96_RS04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04615;old_locus_tag=C9E96_04720
NZ_PYJX01000053.1	Protein Homology	CDS	1273	2640	.	+	0	ID=cds-WP_000443206.1;Parent=gene-C9E96_RS04615;Dbxref=GenBank:WP_000443206.1;Name=WP_000443206.1;Ontology_term=GO:0006094,GO:0003941;gbkey=CDS;go_function=L-serine ammonia-lyase activity|0003941||IEA;go_process=gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461141.1;locus_tag=C9E96_RS04615;product=L-serine ammonia-lyase;protein_id=WP_000443206.1;transl_table=11
NZ_PYJX01000053.1	RefSeq	gene	2645	3034	.	+	.	ID=gene-C9E96_RS04620;Name=C9E96_RS04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04620;old_locus_tag=C9E96_04725
NZ_PYJX01000053.1	Protein Homology	CDS	2645	3034	.	+	0	ID=cds-WP_000876817.1;Parent=gene-C9E96_RS04620;Dbxref=GenBank:WP_000876817.1;Name=WP_000876817.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461140.1;locus_tag=C9E96_RS04620;product=helix-turn-helix domain-containing protein;protein_id=WP_000876817.1;transl_table=11
NZ_PYJX01000053.1	RefSeq	gene	3023	3880	.	-	.	ID=gene-C9E96_RS04625;Name=fghA;gbkey=Gene;gene=fghA;gene_biotype=protein_coding;locus_tag=C9E96_RS04625;old_locus_tag=C9E96_04730
NZ_PYJX01000053.1	Protein Homology	CDS	3023	3880	.	-	0	ID=cds-WP_000425490.1;Parent=gene-C9E96_RS04625;Dbxref=GenBank:WP_000425490.1;Name=WP_000425490.1;Ontology_term=GO:0046294,GO:0018738;gbkey=CDS;gene=fghA;go_function=S-formylglutathione hydrolase activity|0018738||IEA;go_process=formaldehyde catabolic process|0046294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461139.2;locus_tag=C9E96_RS04625;product=S-formylglutathione hydrolase;protein_id=WP_000425490.1;transl_table=11
NZ_PYJX01000053.1	RefSeq	gene	4210	4878	.	+	.	ID=gene-C9E96_RS04630;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=C9E96_RS04630;old_locus_tag=C9E96_04740
NZ_PYJX01000053.1	Protein Homology	CDS	4210	4878	.	+	0	ID=cds-WP_001139611.1;Parent=gene-C9E96_RS04630;Dbxref=GenBank:WP_001139611.1;Name=WP_001139611.1;Ontology_term=GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461138.1;locus_tag=C9E96_RS04630;product=GTP cyclohydrolase I FolE;protein_id=WP_001139611.1;transl_table=11
NZ_PYJX01000053.1	RefSeq	gene	4893	6035	.	+	.	ID=gene-C9E96_RS04635;Name=yeiB;gbkey=Gene;gene=yeiB;gene_biotype=protein_coding;locus_tag=C9E96_RS04635;old_locus_tag=C9E96_04745
NZ_PYJX01000053.1	Protein Homology	CDS	4893	6035	.	+	0	ID=cds-WP_001518079.1;Parent=gene-C9E96_RS04635;Dbxref=GenBank:WP_001518079.1;Name=WP_001518079.1;gbkey=CDS;gene=yeiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461137.1;locus_tag=C9E96_RS04635;product=DUF418 domain-containing protein YeiB;protein_id=WP_001518079.1;transl_table=11
NZ_PYJX01000053.1	RefSeq	gene	6185	7207	.	+	.	ID=gene-C9E96_RS04640;Name=galS;gbkey=Gene;gene=galS;gene_biotype=protein_coding;locus_tag=C9E96_RS04640;old_locus_tag=C9E96_04750
NZ_PYJX01000053.1	Protein Homology	CDS	6185	7207	.	+	0	ID=cds-WP_000628631.1;Parent=gene-C9E96_RS04640;Dbxref=GenBank:WP_000628631.1;Name=WP_000628631.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=galS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461136.1;locus_tag=C9E96_RS04640;product=HTH-type transcriptional regulator GalS;protein_id=WP_000628631.1;transl_table=11
##sequence-region NZ_PYJX01000217.1 1 7442
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000217.1	RefSeq	region	1	7442	.	+	.	ID=NZ_PYJX01000217.1:1..7442;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000217.1	RefSeq	gene	1	211	.	-	.	ID=gene-C9E96_RS21610;Name=C9E96_RS21610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21610;old_locus_tag=C9E96_22135;partial=true;start_range=.,1
NZ_PYJX01000217.1	Protein Homology	CDS	1	211	.	-	0	ID=cds-WP_210114532.1;Parent=gene-C9E96_RS21610;Dbxref=GenBank:WP_210114532.1;Name=WP_210114532.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013097726.1;locus_tag=C9E96_RS21610;partial=true;product=recombination protein NinB;protein_id=WP_210114532.1;start_range=.,1;transl_table=11
NZ_PYJX01000217.1	RefSeq	pseudogene	241	321	.	-	.	ID=gene-C9E96_RS24340;Name=C9E96_RS24340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24340;partial=true;pseudo=true;start_range=.,241
NZ_PYJX01000217.1	Protein Homology	CDS	241	321	.	-	0	ID=cds-C9E96_RS24340;Parent=gene-C9E96_RS24340;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309983.1;locus_tag=C9E96_RS24340;partial=true;product=DUF1367 family protein;pseudo=true;start_range=.,241;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	385	633	.	-	.	ID=gene-C9E96_RS21615;Name=C9E96_RS21615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21615;old_locus_tag=C9E96_22140
NZ_PYJX01000217.1	Protein Homology	CDS	385	633	.	-	0	ID=cds-WP_000911592.1;Parent=gene-C9E96_RS21615;Dbxref=GenBank:WP_000911592.1;Name=WP_000911592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000911590.1;locus_tag=C9E96_RS21615;product=hypothetical protein;protein_id=WP_000911592.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	883	1038	.	-	.	ID=gene-C9E96_RS21620;Name=C9E96_RS21620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21620;old_locus_tag=C9E96_22150
NZ_PYJX01000217.1	Protein Homology	CDS	883	1038	.	-	0	ID=cds-WP_001597144.1;Parent=gene-C9E96_RS21620;Dbxref=GenBank:WP_001597144.1;Name=WP_001597144.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416080.1;locus_tag=C9E96_RS21620;product=Hok/Gef family protein;protein_id=WP_001597144.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	1242	1514	.	-	.	ID=gene-C9E96_RS21625;Name=C9E96_RS21625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21625;old_locus_tag=C9E96_22155
NZ_PYJX01000217.1	Protein Homology	CDS	1242	1514	.	-	0	ID=cds-WP_079981260.1;Parent=gene-C9E96_RS21625;Dbxref=GenBank:WP_079981260.1;Name=WP_079981260.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000687974.1;locus_tag=C9E96_RS21625;product=hypothetical protein;protein_id=WP_079981260.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	1511	1906	.	-	.	ID=gene-C9E96_RS21630;Name=C9E96_RS21630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21630;old_locus_tag=C9E96_22160
NZ_PYJX01000217.1	Protein Homology	CDS	1511	1906	.	-	0	ID=cds-WP_079981261.1;Parent=gene-C9E96_RS21630;Dbxref=GenBank:WP_079981261.1;Name=WP_079981261.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000089414.1;locus_tag=C9E96_RS21630;product=DUF977 family protein;protein_id=WP_079981261.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	1920	2462	.	-	.	ID=gene-C9E96_RS21635;Name=C9E96_RS21635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21635;old_locus_tag=C9E96_22165
NZ_PYJX01000217.1	Protein Homology	CDS	1920	2462	.	-	0	ID=cds-WP_157872077.1;Parent=gene-C9E96_RS21635;Dbxref=GenBank:WP_157872077.1;Name=WP_157872077.1;Ontology_term=GO:0006270;gbkey=CDS;go_process=DNA replication initiation|0006270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001307798.1;locus_tag=C9E96_RS21635;product=replication protein P;protein_id=WP_157872077.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	2374	3381	.	-	.	ID=gene-C9E96_RS24095;Name=C9E96_RS24095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24095;old_locus_tag=C9E96_22170
NZ_PYJX01000217.1	Protein Homology	CDS	2374	3381	.	-	0	ID=cds-WP_135369803.1;Parent=gene-C9E96_RS24095;Dbxref=GenBank:WP_135369803.1;Name=WP_135369803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000729543.1;locus_tag=C9E96_RS24095;product=DUF1376 domain-containing protein;protein_id=WP_135369803.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	3425	3919	.	-	.	ID=gene-C9E96_RS21645;Name=C9E96_RS21645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21645;old_locus_tag=C9E96_22175
NZ_PYJX01000217.1	Protein Homology	CDS	3425	3919	.	-	0	ID=cds-WP_001534383.1;Parent=gene-C9E96_RS21645;Dbxref=GenBank:WP_001534383.1;Name=WP_001534383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001533160.1;locus_tag=C9E96_RS21645;product=hypothetical protein;protein_id=WP_001534383.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	3906	4160	.	-	.	ID=gene-C9E96_RS21650;Name=C9E96_RS21650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21650;old_locus_tag=C9E96_22180
NZ_PYJX01000217.1	Protein Homology	CDS	3906	4160	.	-	0	ID=cds-WP_001033911.1;Parent=gene-C9E96_RS21650;Dbxref=GenBank:WP_001033911.1;Name=WP_001033911.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF013540.6;locus_tag=C9E96_RS21650;product=helix-turn-helix domain-containing protein;protein_id=WP_001033911.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	4257	4682	.	+	.	ID=gene-C9E96_RS21655;Name=C9E96_RS21655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21655;old_locus_tag=C9E96_22185
NZ_PYJX01000217.1	Protein Homology	CDS	4257	4682	.	+	0	ID=cds-WP_001224472.1;Parent=gene-C9E96_RS21655;Dbxref=GenBank:WP_001224472.1;Name=WP_001224472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001224472.1;locus_tag=C9E96_RS21655;product=helix-turn-helix domain-containing protein;protein_id=WP_001224472.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	4821	4997	.	-	.	ID=gene-C9E96_RS24010;Name=C9E96_RS24010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24010
NZ_PYJX01000217.1	GeneMarkS-2+	CDS	4821	4997	.	-	0	ID=cds-WP_165451218.1;Parent=gene-C9E96_RS24010;Dbxref=GenBank:WP_165451218.1;Name=WP_165451218.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS24010;product=hypothetical protein;protein_id=WP_165451218.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	4996	5220	.	+	.	ID=gene-C9E96_RS21660;Name=C9E96_RS21660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21660;old_locus_tag=C9E96_22190
NZ_PYJX01000217.1	Protein Homology	CDS	4996	5220	.	+	0	ID=cds-WP_000402504.1;Parent=gene-C9E96_RS21660;Dbxref=GenBank:WP_000402504.1;Name=WP_000402504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000402504.1;locus_tag=C9E96_RS21660;product=hypothetical protein;protein_id=WP_000402504.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	5640	5924	.	+	.	ID=gene-C9E96_RS21665;Name=C9E96_RS21665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21665;old_locus_tag=C9E96_22195
NZ_PYJX01000217.1	Protein Homology	CDS	5640	5924	.	+	0	ID=cds-WP_135369802.1;Parent=gene-C9E96_RS21665;Dbxref=GenBank:WP_135369802.1;Name=WP_135369802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000613376.1;locus_tag=C9E96_RS21665;product=YdaE family protein;protein_id=WP_135369802.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	5999	6334	.	+	.	ID=gene-C9E96_RS21670;Name=C9E96_RS21670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21670;old_locus_tag=C9E96_22200
NZ_PYJX01000217.1	Protein Homology	CDS	5999	6334	.	+	0	ID=cds-WP_000799629.1;Parent=gene-C9E96_RS21670;Dbxref=GenBank:WP_000799629.1;Name=WP_000799629.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000799630.1;locus_tag=C9E96_RS21670;product=hypothetical protein;protein_id=WP_000799629.1;transl_table=11
NZ_PYJX01000217.1	RefSeq	gene	6475	7442	.	+	.	ID=gene-C9E96_RS21675;Name=C9E96_RS21675;end_range=7442,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21675;old_locus_tag=C9E96_22205;partial=true
NZ_PYJX01000217.1	Protein Homology	CDS	6475	7442	.	+	0	ID=cds-WP_348631173.1;Parent=gene-C9E96_RS21675;Dbxref=GenBank:WP_348631173.1;Name=WP_348631173.1;Ontology_term=GO:0090304,GO:0051908;end_range=7442,.;gbkey=CDS;go_function=double-stranded DNA 5'-3' DNA exonuclease activity|0051908||IEA;go_process=nucleic acid metabolic process|0090304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000023732.1;locus_tag=C9E96_RS21675;partial=true;product=RecE family exodeoxyribonuclease;protein_id=WP_348631173.1;transl_table=11
##sequence-region NZ_PYJX01000178.1 1 7420
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000178.1	RefSeq	region	1	7420	.	+	.	ID=NZ_PYJX01000178.1:1..7420;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000178.1	RefSeq	gene	1	62	.	-	.	ID=gene-C9E96_RS16855;Name=C9E96_RS16855;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS16855;old_locus_tag=C9E96_17280;partial=true;start_range=.,1
NZ_PYJX01000178.1	cmsearch	rRNA	1	62	.	-	.	ID=rna-C9E96_RS16855;Parent=gene-C9E96_RS16855;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS16855;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_PYJX01000178.1	cmsearch	exon	1	62	.	-	.	ID=exon-C9E96_RS16855-1;Parent=rna-C9E96_RS16855;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS16855;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_PYJX01000178.1	RefSeq	gene	514	3087	.	-	.	ID=gene-C9E96_RS16860;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=C9E96_RS16860;old_locus_tag=C9E96_17290
NZ_PYJX01000178.1	Protein Homology	CDS	514	3087	.	-	0	ID=cds-WP_001235092.1;Parent=gene-C9E96_RS16860;Dbxref=GenBank:WP_001235092.1;Name=WP_001235092.1;Ontology_term=GO:0009408,GO:0042026,GO:0005524,GO:0016887;gbkey=CDS;gene=clpB;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=response to heat|0009408||IEA,protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002461515.1;locus_tag=C9E96_RS16860;product=ATP-dependent chaperone ClpB;protein_id=WP_001235092.1;transl_table=11
NZ_PYJX01000178.1	RefSeq	gene	3217	3948	.	-	.	ID=gene-C9E96_RS16865;Name=yfiH;gbkey=Gene;gene=yfiH;gene_biotype=protein_coding;locus_tag=C9E96_RS16865;old_locus_tag=C9E96_17295
NZ_PYJX01000178.1	Protein Homology	CDS	3217	3948	.	-	0	ID=cds-WP_000992633.1;Parent=gene-C9E96_RS16865;Dbxref=GenBank:WP_000992633.1;Name=WP_000992633.1;Ontology_term=GO:0004000,GO:0004731,GO:0042803;gbkey=CDS;gene=yfiH;go_function=adenosine deaminase activity|0004000||IEA,purine-nucleoside phosphorylase activity|0004731||IEA,protein homodimerization activity|0042803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461592.1;locus_tag=C9E96_RS16865;product=purine nucleoside phosphorylase YfiH;protein_id=WP_000992633.1;transl_table=11
NZ_PYJX01000178.1	RefSeq	gene	3945	4925	.	-	.	ID=gene-C9E96_RS16870;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=C9E96_RS16870;old_locus_tag=C9E96_17300
NZ_PYJX01000178.1	Protein Homology	CDS	3945	4925	.	-	0	ID=cds-WP_000079130.1;Parent=gene-C9E96_RS16870;Dbxref=GenBank:WP_000079130.1;Name=WP_000079130.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017383977.1;locus_tag=C9E96_RS16870;product=23S rRNA pseudouridine(1911/1915/1917) synthase RluD;protein_id=WP_000079130.1;transl_table=11
NZ_PYJX01000178.1	RefSeq	gene	5057	5794	.	+	.	ID=gene-C9E96_RS16875;Name=bamD;gbkey=Gene;gene=bamD;gene_biotype=protein_coding;locus_tag=C9E96_RS16875;old_locus_tag=C9E96_17305
NZ_PYJX01000178.1	Protein Homology	CDS	5057	5794	.	+	0	ID=cds-WP_000197660.1;Parent=gene-C9E96_RS16875;Dbxref=GenBank:WP_000197660.1;Name=WP_000197660.1;gbkey=CDS;gene=bamD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461594.1;locus_tag=C9E96_RS16875;product=outer membrane protein assembly factor BamD;protein_id=WP_000197660.1;transl_table=11
NZ_PYJX01000178.1	RefSeq	gene	6066	6404	.	+	.	ID=gene-C9E96_RS16880;Name=raiA;gbkey=Gene;gene=raiA;gene_biotype=protein_coding;locus_tag=C9E96_RS16880;old_locus_tag=C9E96_17310
NZ_PYJX01000178.1	Protein Homology	CDS	6066	6404	.	+	0	ID=cds-WP_000178449.1;Parent=gene-C9E96_RS16880;Dbxref=GenBank:WP_000178449.1;Name=WP_000178449.1;gbkey=CDS;gene=raiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461595.1;locus_tag=C9E96_RS16880;product=ribosome-associated translation inhibitor RaiA;protein_id=WP_000178449.1;transl_table=11
NZ_PYJX01000178.1	cmsearch	sequence_feature	6507	6632	.	+	.	ID=id-NZ_PYJX01000178.1:6507..6632;Dbxref=RFAM:RF01859;Note=Phe leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYJX01000178.1	RefSeq	gene	6508	6555	.	+	.	ID=gene-C9E96_RS16885;Name=pheL;gbkey=Gene;gene=pheL;gene_biotype=protein_coding;locus_tag=C9E96_RS16885;old_locus_tag=C9E96_17315
NZ_PYJX01000178.1	Protein Homology	CDS	6508	6555	.	+	0	ID=cds-WP_010989056.1;Parent=gene-C9E96_RS16885;Dbxref=GenBank:WP_010989056.1;Name=WP_010989056.1;Ontology_term=GO:0031556;gbkey=CDS;gene=pheL;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_449055.1;locus_tag=C9E96_RS16885;product=pheA operon leader peptide PheL;protein_id=WP_010989056.1;transl_table=11
NZ_PYJX01000178.1	RefSeq	gene	6655	7420	.	+	.	ID=gene-C9E96_RS16890;Name=C9E96_RS16890;end_range=7420,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16890;old_locus_tag=C9E96_17320;partial=true
NZ_PYJX01000178.1	Protein Homology	CDS	6655	7420	.	+	0	ID=cds-WP_135494429.1;Parent=gene-C9E96_RS16890;Dbxref=GenBank:WP_135494429.1;Name=WP_135494429.1;Ontology_term=GO:0009094,GO:0009095,GO:0004106,GO:0005737;end_range=7420,.;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=chorismate mutase activity|0004106||IEA;go_process=L-phenylalanine biosynthetic process|0009094||IEA,aromatic amino acid family biosynthetic process%2C prephenate pathway|0009095||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461597.1;locus_tag=C9E96_RS16890;partial=true;product=chorismate mutase;protein_id=WP_135494429.1;transl_table=11
##sequence-region NZ_PYJX01000226.1 1 7325
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000226.1	RefSeq	region	1	7325	.	+	.	ID=NZ_PYJX01000226.1:1..7325;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000226.1	RefSeq	pseudogene	1	1073	.	+	.	ID=gene-C9E96_RS22015;Name=C9E96_RS22015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS22015;old_locus_tag=C9E96_22555;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000226.1	Protein Homology	CDS	1	1073	.	+	2	ID=cds-C9E96_RS22015;Parent=gene-C9E96_RS22015;Note=internal stop%3B incomplete%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460284.1;locus_tag=C9E96_RS22015;partial=true;product=catalase-related domain-containing protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000226.1	RefSeq	gene	1117	1875	.	-	.	ID=gene-C9E96_RS22020;Name=chbG;gbkey=Gene;gene=chbG;gene_biotype=protein_coding;locus_tag=C9E96_RS22020;old_locus_tag=C9E96_22560
NZ_PYJX01000226.1	Protein Homology	CDS	1117	1875	.	-	0	ID=cds-WP_000442730.1;Parent=gene-C9E96_RS22020;Dbxref=GenBank:WP_000442730.1;Name=WP_000442730.1;Ontology_term=GO:0000272,GO:0016811;gbkey=CDS;gene=chbG;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides|0016811||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460283.1;locus_tag=C9E96_RS22020;product=chitin disaccharide deacetylase;protein_id=WP_000442730.1;transl_table=11
NZ_PYJX01000226.1	RefSeq	gene	1888	3243	.	-	.	ID=gene-C9E96_RS22025;Name=C9E96_RS22025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22025;old_locus_tag=C9E96_22565
NZ_PYJX01000226.1	Protein Homology	CDS	1888	3243	.	-	0	ID=cds-WP_135494629.1;Parent=gene-C9E96_RS22025;Dbxref=GenBank:WP_135494629.1;Name=WP_135494629.1;Ontology_term=GO:0005975,GO:0008706,GO:0046872;gbkey=CDS;go_function=6-phospho-beta-glucosidase activity|0008706||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460282.1;locus_tag=C9E96_RS22025;product=6-phospho-beta-glucosidase;protein_id=WP_135494629.1;transl_table=11
NZ_PYJX01000226.1	RefSeq	gene	3368	4210	.	-	.	ID=gene-C9E96_RS22030;Name=chbR;gbkey=Gene;gene=chbR;gene_biotype=protein_coding;locus_tag=C9E96_RS22030;old_locus_tag=C9E96_22570
NZ_PYJX01000226.1	Protein Homology	CDS	3368	4210	.	-	0	ID=cds-WP_000983393.1;Parent=gene-C9E96_RS22030;Dbxref=GenBank:WP_000983393.1;Name=WP_000983393.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=chbR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460281.1;locus_tag=C9E96_RS22030;product=transcriptional regulator ChbR;protein_id=WP_000983393.1;transl_table=11
NZ_PYJX01000226.1	RefSeq	gene	4221	4568	.	-	.	ID=gene-C9E96_RS22035;Name=chbA;gbkey=Gene;gene=chbA;gene_biotype=protein_coding;locus_tag=C9E96_RS22035;old_locus_tag=C9E96_22575
NZ_PYJX01000226.1	Protein Homology	CDS	4221	4568	.	-	0	ID=cds-WP_001580338.1;Parent=gene-C9E96_RS22035;Dbxref=GenBank:WP_001580338.1;Name=WP_001580338.1;gbkey=CDS;gene=chbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460280.1;locus_tag=C9E96_RS22035;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIA;protein_id=WP_001580338.1;transl_table=11
NZ_PYJX01000226.1	RefSeq	gene	4619	5977	.	-	.	ID=gene-C9E96_RS22040;Name=chbC;gbkey=Gene;gene=chbC;gene_biotype=protein_coding;locus_tag=C9E96_RS22040;old_locus_tag=C9E96_22580
NZ_PYJX01000226.1	Protein Homology	CDS	4619	5977	.	-	0	ID=cds-WP_000073063.1;Parent=gene-C9E96_RS22040;Dbxref=GenBank:WP_000073063.1;Name=WP_000073063.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;gene=chbC;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460279.1;locus_tag=C9E96_RS22040;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIC;protein_id=WP_000073063.1;transl_table=11
NZ_PYJX01000226.1	RefSeq	gene	6060	6380	.	-	.	ID=gene-C9E96_RS22045;Name=chbB;gbkey=Gene;gene=chbB;gene_biotype=protein_coding;locus_tag=C9E96_RS22045;old_locus_tag=C9E96_22585
NZ_PYJX01000226.1	Protein Homology	CDS	6060	6380	.	-	0	ID=cds-WP_000412161.1;Parent=gene-C9E96_RS22045;Dbxref=GenBank:WP_000412161.1;Name=WP_000412161.1;gbkey=CDS;gene=chbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460278.1;locus_tag=C9E96_RS22045;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIB;protein_id=WP_000412161.1;transl_table=11
NZ_PYJX01000226.1	RefSeq	gene	6681	7022	.	-	.	ID=gene-C9E96_RS22055;Name=osmE;gbkey=Gene;gene=osmE;gene_biotype=protein_coding;locus_tag=C9E96_RS22055;old_locus_tag=C9E96_22595
NZ_PYJX01000226.1	Protein Homology	CDS	6681	7022	.	-	0	ID=cds-WP_001039301.1;Parent=gene-C9E96_RS22055;Dbxref=GenBank:WP_001039301.1;Name=WP_001039301.1;Ontology_term=GO:0019867;gbkey=CDS;gene=osmE;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460277.1;locus_tag=C9E96_RS22055;product=osmotically-inducible lipoprotein OsmE;protein_id=WP_001039301.1;transl_table=11
NZ_PYJX01000226.1	RefSeq	pseudogene	7241	7325	.	+	.	ID=gene-C9E96_RS22065;Name=nadE;end_range=7325,.;gbkey=Gene;gene=nadE;gene_biotype=pseudogene;locus_tag=C9E96_RS22065;old_locus_tag=C9E96_22605;partial=true;pseudo=true
NZ_PYJX01000226.1	Protein Homology	CDS	7241	7325	.	+	0	ID=cds-C9E96_RS22065;Parent=gene-C9E96_RS22065;Note=catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=7325,.;gbkey=CDS;gene=nadE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460276.1;locus_tag=C9E96_RS22065;partial=true;product=ammonia-dependent NAD(+) synthetase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000056.1 1 7312
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000056.1	RefSeq	region	1	7312	.	+	.	ID=NZ_PYJX01000056.1:1..7312;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000056.1	RefSeq	gene	1	156	.	+	.	ID=gene-C9E96_RS04880;Name=C9E96_RS04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04880;old_locus_tag=C9E96_04995;partial=true;start_range=.,1
NZ_PYJX01000056.1	Protein Homology	CDS	1	156	.	+	0	ID=cds-WP_210114516.1;Parent=gene-C9E96_RS04880;Dbxref=GenBank:WP_210114516.1;Name=WP_210114516.1;Ontology_term=GO:0033743;gbkey=CDS;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226381.1;locus_tag=C9E96_RS04880;partial=true;product=peptide-methionine (R)-S-oxide reductase;protein_id=WP_210114516.1;start_range=.,1;transl_table=11
NZ_PYJX01000056.1	RefSeq	gene	198	476	.	+	.	ID=gene-C9E96_RS04885;Name=C9E96_RS04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04885;old_locus_tag=C9E96_05000
NZ_PYJX01000056.1	Protein Homology	CDS	198	476	.	+	0	ID=cds-WP_135493900.1;Parent=gene-C9E96_RS04885;Dbxref=GenBank:WP_135493900.1;Name=WP_135493900.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460258.1;locus_tag=C9E96_RS04885;product=YeaC family protein;protein_id=WP_135493900.1;transl_table=11
NZ_PYJX01000056.1	RefSeq	gene	828	1484	.	-	.	ID=gene-C9E96_RS04890;Name=pncA;gbkey=Gene;gene=pncA;gene_biotype=protein_coding;locus_tag=C9E96_RS04890;old_locus_tag=C9E96_05005
NZ_PYJX01000056.1	Protein Homology	CDS	828	1484	.	-	0	ID=cds-WP_000184707.1;Parent=gene-C9E96_RS04890;Dbxref=GenBank:WP_000184707.1;Name=WP_000184707.1;gbkey=CDS;gene=pncA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460259.1;locus_tag=C9E96_RS04890;product=bifunctional nicotinamidase/pyrazinamidase;protein_id=WP_000184707.1;transl_table=11
NZ_PYJX01000056.1	RefSeq	gene	1511	2527	.	-	.	ID=gene-C9E96_RS04895;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;locus_tag=C9E96_RS04895;old_locus_tag=C9E96_05010
NZ_PYJX01000056.1	Protein Homology	CDS	1511	2527	.	-	0	ID=cds-WP_001170136.1;Parent=gene-C9E96_RS04895;Dbxref=GenBank:WP_001170136.1;Name=WP_001170136.1;Ontology_term=GO:0006520,GO:0004067;gbkey=CDS;gene=ansA;go_function=asparaginase activity|0004067||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460260.1;locus_tag=C9E96_RS04895;product=asparaginase;protein_id=WP_001170136.1;transl_table=11
NZ_PYJX01000056.1	RefSeq	gene	2623	4479	.	-	.	ID=gene-C9E96_RS04900;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=C9E96_RS04900;old_locus_tag=C9E96_05015
NZ_PYJX01000056.1	Protein Homology	CDS	2623	4479	.	-	0	ID=cds-WP_135493902.1;Parent=gene-C9E96_RS04900;Dbxref=GenBank:WP_135493902.1;Name=WP_135493902.1;Ontology_term=GO:0006465,GO:0008233;gbkey=CDS;gene=sppA;go_function=peptidase activity|0008233||IEA;go_process=signal peptide processing|0006465||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460261.1;locus_tag=C9E96_RS04900;product=signal peptide peptidase SppA;protein_id=WP_135493902.1;transl_table=11
NZ_PYJX01000056.1	RefSeq	gene	4653	5204	.	+	.	ID=gene-C9E96_RS04905;Name=C9E96_RS04905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04905;old_locus_tag=C9E96_05020
NZ_PYJX01000056.1	Protein Homology	CDS	4653	5204	.	+	0	ID=cds-WP_000339313.1;Parent=gene-C9E96_RS04905;Dbxref=GenBank:WP_000339313.1;Name=WP_000339313.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460262.1;locus_tag=C9E96_RS04905;product=NAD(P)H nitroreductase;protein_id=WP_000339313.1;transl_table=11
NZ_PYJX01000056.1	RefSeq	gene	5322	6365	.	+	.	ID=gene-C9E96_RS04910;Name=selD;gbkey=Gene;gene=selD;gene_biotype=protein_coding;locus_tag=C9E96_RS04910;old_locus_tag=C9E96_05025
NZ_PYJX01000056.1	Protein Homology	CDS	5322	6365	.	+	0	ID=cds-WP_001294900.1;Parent=gene-C9E96_RS04910;Dbxref=GenBank:WP_001294900.1;Name=WP_001294900.1;Ontology_term=GO:0016260,GO:0004756;gbkey=CDS;gene=selD;go_function=selenide%2C water dikinase activity|0004756||IEA;go_process=selenocysteine biosynthetic process|0016260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460263.1;locus_tag=C9E96_RS04910;product=selenide%2C water dikinase SelD;protein_id=WP_001294900.1;transl_table=11
NZ_PYJX01000056.1	RefSeq	gene	6370	7312	.	+	.	ID=gene-C9E96_RS04915;Name=C9E96_RS04915;end_range=7312,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04915;old_locus_tag=C9E96_05030;partial=true
NZ_PYJX01000056.1	Protein Homology	CDS	6370	7312	.	+	0	ID=cds-WP_245306424.1;Parent=gene-C9E96_RS04915;Dbxref=GenBank:WP_245306424.1;Name=WP_245306424.1;Ontology_term=GO:0006265,GO:0003677,GO:0003916;end_range=7312,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460264.1;locus_tag=C9E96_RS04915;partial=true;product=DNA topoisomerase;protein_id=WP_245306424.1;transl_table=11
##sequence-region NZ_PYJX01000108.1 1 7163
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000108.1	RefSeq	region	1	7163	.	+	.	ID=NZ_PYJX01000108.1:1..7163;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000108.1	RefSeq	gene	1	800	.	+	.	ID=gene-C9E96_RS09120;Name=C9E96_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09120;old_locus_tag=C9E96_09305;partial=true;start_range=.,1
NZ_PYJX01000108.1	Protein Homology	CDS	1	800	.	+	2	ID=cds-WP_135494114.1;Parent=gene-C9E96_RS09120;Dbxref=GenBank:WP_135494114.1;Name=WP_135494114.1;Ontology_term=GO:0018193;gbkey=CDS;go_process=peptidyl-amino acid modification|0018193||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463151.1;locus_tag=C9E96_RS09120;partial=true;product=aspartyl/asparaginyl beta-hydroxylase domain-containing protein;protein_id=WP_135494114.1;start_range=.,1;transl_table=11
NZ_PYJX01000108.1	RefSeq	gene	1155	3302	.	+	.	ID=gene-C9E96_RS09125;Name=fdhF;gbkey=Gene;gene=fdhF;gene_biotype=protein_coding;locus_tag=C9E96_RS09125;old_locus_tag=C9E96_09310
NZ_PYJX01000108.1	Protein Homology	CDS	1155	3302	.	+	0	ID=cds-WP_135494116.1;Parent=gene-C9E96_RS09125;Dbxref=GenBank:WP_135494116.1;Name=WP_135494116.1;Ontology_term=GO:0015942,GO:0008863,GO:0009326;gbkey=CDS;gene=fdhF;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463150.1;locus_tag=C9E96_RS09125;product=formate dehydrogenase subunit alpha;protein_id=WP_135494116.1;transl_except=(pos:1572..1574%2Caa:Sec);transl_table=11
NZ_PYJX01000108.1	RefSeq	gene	3479	4168	.	+	.	ID=gene-C9E96_RS09130;Name=yjcO;gbkey=Gene;gene=yjcO;gene_biotype=protein_coding;locus_tag=C9E96_RS09130;old_locus_tag=C9E96_09315
NZ_PYJX01000108.1	Protein Homology	CDS	3479	4168	.	+	0	ID=cds-WP_135494118.1;Parent=gene-C9E96_RS09130;Dbxref=GenBank:WP_135494118.1;Name=WP_135494118.1;gbkey=CDS;gene=yjcO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463149.1;locus_tag=C9E96_RS09130;product=Sel1 family TPR-like repeat protein YjcO;protein_id=WP_135494118.1;transl_table=11
NZ_PYJX01000108.1	RefSeq	gene	4326	5636	.	-	.	ID=gene-C9E96_RS09135;Name=gltP;gbkey=Gene;gene=gltP;gene_biotype=protein_coding;locus_tag=C9E96_RS09135;old_locus_tag=C9E96_09320
NZ_PYJX01000108.1	Protein Homology	CDS	4326	5636	.	-	0	ID=cds-WP_000793278.1;Parent=gene-C9E96_RS09135;Dbxref=GenBank:WP_000793278.1;Name=WP_000793278.1;Ontology_term=GO:0006835,GO:0015293,GO:0016020;gbkey=CDS;gene=gltP;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=dicarboxylic acid transport|0006835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463148.1;locus_tag=C9E96_RS09135;product=glutamate/aspartate:proton symporter GltP;protein_id=WP_000793278.1;transl_table=11
NZ_PYJX01000108.1	RefSeq	gene	5981	6601	.	-	.	ID=gene-C9E96_RS09140;Name=nrfG;gbkey=Gene;gene=nrfG;gene_biotype=protein_coding;locus_tag=C9E96_RS09140;old_locus_tag=C9E96_09325
NZ_PYJX01000108.1	Protein Homology	CDS	5981	6601	.	-	0	ID=cds-WP_000083232.1;Parent=gene-C9E96_RS09140;Dbxref=GenBank:WP_000083232.1;Name=WP_000083232.1;gbkey=CDS;gene=nrfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463147.1;locus_tag=C9E96_RS09140;product=heme lyase NrfEFG subunit NrfG;protein_id=WP_000083232.1;transl_table=11
NZ_PYJX01000108.1	RefSeq	pseudogene	6598	7063	.	-	.	ID=gene-C9E96_RS09145;Name=nrfF;end_range=7063,.;gbkey=Gene;gene=nrfF;gene_biotype=pseudogene;locus_tag=C9E96_RS09145;old_locus_tag=C9E96_09330;partial=true;pseudo=true
NZ_PYJX01000108.1	Protein Homology	CDS	6598	7063	.	-	0	ID=cds-C9E96_RS09145;Parent=gene-C9E96_RS09145;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=7063,.;gbkey=CDS;gene=nrfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=C9E96_RS09145;partial=true;product=heme lyase NrfEFG subunit NrfF;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000180.1 1 7103
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000180.1	RefSeq	region	1	7103	.	+	.	ID=NZ_PYJX01000180.1:1..7103;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000180.1	RefSeq	gene	239	1123	.	-	.	ID=gene-C9E96_RS16905;Name=C9E96_RS16905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16905;old_locus_tag=C9E96_17335
NZ_PYJX01000180.1	Protein Homology	CDS	239	1123	.	-	0	ID=cds-WP_000438890.1;Parent=gene-C9E96_RS16905;Dbxref=GenBank:WP_000438890.1;Name=WP_000438890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461355.1;locus_tag=C9E96_RS16905;product=LysR family transcriptional regulator;protein_id=WP_000438890.1;transl_table=11
NZ_PYJX01000180.1	RefSeq	gene	1175	1333	.	-	.	ID=gene-C9E96_RS16910;Name=C9E96_RS16910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16910;old_locus_tag=C9E96_17340
NZ_PYJX01000180.1	Protein Homology	CDS	1175	1333	.	-	0	ID=cds-WP_000658727.1;Parent=gene-C9E96_RS16910;Dbxref=GenBank:WP_000658727.1;Name=WP_000658727.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000658729.1;locus_tag=C9E96_RS16910;product=XapX domain-containing protein;protein_id=WP_000658727.1;transl_table=11
NZ_PYJX01000180.1	RefSeq	gene	1392	2648	.	-	.	ID=gene-C9E96_RS16915;Name=C9E96_RS16915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16915;old_locus_tag=C9E96_17345
NZ_PYJX01000180.1	Protein Homology	CDS	1392	2648	.	-	0	ID=cds-WP_000513241.1;Parent=gene-C9E96_RS16915;Dbxref=GenBank:WP_000513241.1;Name=WP_000513241.1;Ontology_term=GO:0015858,GO:0055085,GO:0015506,GO:0022857;gbkey=CDS;go_function=nucleoside:proton symporter activity|0015506||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleoside transport|0015858||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461356.1;locus_tag=C9E96_RS16915;product=nucleoside permease;protein_id=WP_000513241.1;transl_table=11
NZ_PYJX01000180.1	RefSeq	gene	2703	3536	.	-	.	ID=gene-C9E96_RS16920;Name=xapA;gbkey=Gene;gene=xapA;gene_biotype=protein_coding;locus_tag=C9E96_RS16920;old_locus_tag=C9E96_17350
NZ_PYJX01000180.1	Protein Homology	CDS	2703	3536	.	-	0	ID=cds-WP_001119760.1;Parent=gene-C9E96_RS16920;Dbxref=GenBank:WP_001119760.1;Name=WP_001119760.1;Ontology_term=GO:0055086,GO:0004731,GO:0005737;gbkey=CDS;gene=xapA;go_component=cytoplasm|0005737||IEA;go_function=purine-nucleoside phosphorylase activity|0004731||IEA;go_process=nucleobase-containing small molecule metabolic process|0055086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448816.1;locus_tag=C9E96_RS16920;product=xanthosine phosphorylase;protein_id=WP_001119760.1;transl_table=11
NZ_PYJX01000180.1	RefSeq	gene	3792	4553	.	+	.	ID=gene-C9E96_RS16925;Name=C9E96_RS16925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16925;old_locus_tag=C9E96_17355
NZ_PYJX01000180.1	Protein Homology	CDS	3792	4553	.	+	0	ID=cds-WP_000722926.1;Parent=gene-C9E96_RS16925;Dbxref=GenBank:WP_000722926.1;Name=WP_000722926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461358.1;locus_tag=C9E96_RS16925;product=outer membrane protein;protein_id=WP_000722926.1;transl_table=11
NZ_PYJX01000180.1	RefSeq	gene	4615	5541	.	-	.	ID=gene-C9E96_RS16930;Name=C9E96_RS16930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16930;old_locus_tag=C9E96_17360
NZ_PYJX01000180.1	Protein Homology	CDS	4615	5541	.	-	0	ID=cds-WP_001109831.1;Parent=gene-C9E96_RS16930;Dbxref=GenBank:WP_001109831.1;Name=WP_001109831.1;Ontology_term=GO:0003677,GO:0003700,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461359.1;locus_tag=C9E96_RS16930;product=LysR family transcriptional regulator;protein_id=WP_001109831.1;transl_table=11
NZ_PYJX01000180.1	RefSeq	gene	5631	6629	.	+	.	ID=gene-C9E96_RS16935;Name=C9E96_RS16935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16935;old_locus_tag=C9E96_17365
NZ_PYJX01000180.1	Protein Homology	CDS	5631	6629	.	+	0	ID=cds-WP_000765580.1;Parent=gene-C9E96_RS16935;Dbxref=GenBank:WP_000765580.1;Name=WP_000765580.1;Ontology_term=GO:0006810,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461360.2;locus_tag=C9E96_RS16935;product=bile acid:sodium symporter family protein;protein_id=WP_000765580.1;transl_table=11
NZ_PYJX01000180.1	RefSeq	gene	6626	6844	.	-	.	ID=gene-C9E96_RS16940;Name=C9E96_RS16940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16940;old_locus_tag=C9E96_17370
NZ_PYJX01000180.1	Protein Homology	CDS	6626	6844	.	-	0	ID=cds-WP_001519708.1;Parent=gene-C9E96_RS16940;Dbxref=GenBank:WP_001519708.1;Name=WP_001519708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588464.1;locus_tag=C9E96_RS16940;product=DUF3820 family protein;protein_id=WP_001519708.1;transl_table=11
NZ_PYJX01000180.1	RefSeq	gene	6846	7103	.	-	.	ID=gene-C9E96_RS16945;Name=C9E96_RS16945;end_range=7103,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16945;old_locus_tag=C9E96_17375;partial=true
NZ_PYJX01000180.1	Protein Homology	CDS	6846	7103	.	-	0	ID=cds-WP_348631166.1;Parent=gene-C9E96_RS16945;Dbxref=GenBank:WP_348631166.1;Name=WP_348631166.1;end_range=7103,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461362.1;locus_tag=C9E96_RS16945;partial=true;product=BRCT domain-containing protein;protein_id=WP_348631166.1;transl_table=11
##sequence-region NZ_PYJX01000205.1 1 6932
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000205.1	RefSeq	region	1	6932	.	+	.	ID=NZ_PYJX01000205.1:1..6932;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000205.1	RefSeq	gene	1	1266	.	+	.	ID=gene-C9E96_RS20460;Name=C9E96_RS20460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20460;old_locus_tag=C9E96_20980;partial=true;start_range=.,1
NZ_PYJX01000205.1	Protein Homology	CDS	1	1266	.	+	0	ID=cds-WP_245306437.1;Parent=gene-C9E96_RS20460;Dbxref=GenBank:WP_245306437.1;Name=WP_245306437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001529574.1;locus_tag=C9E96_RS20460;partial=true;product=RHS repeat-associated core domain-containing protein;protein_id=WP_245306437.1;start_range=.,1;transl_table=11
NZ_PYJX01000205.1	RefSeq	gene	1270	1758	.	+	.	ID=gene-C9E96_RS20465;Name=C9E96_RS20465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20465;old_locus_tag=C9E96_20985
NZ_PYJX01000205.1	GeneMarkS-2+	CDS	1270	1758	.	+	0	ID=cds-WP_131040954.1;Parent=gene-C9E96_RS20465;Dbxref=GenBank:WP_131040954.1;Name=WP_131040954.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS20465;product=hypothetical protein;protein_id=WP_131040954.1;transl_table=11
NZ_PYJX01000205.1	RefSeq	pseudogene	1824	2036	.	-	.	ID=gene-C9E96_RS20470;Name=C9E96_RS20470;end_range=2036,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS20470;old_locus_tag=C9E96_20990;partial=true;pseudo=true
NZ_PYJX01000205.1	Protein Homology	CDS	1824	2036	.	-	0	ID=cds-C9E96_RS20470;Parent=gene-C9E96_RS20470;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;end_range=2036,.;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008784875.1;locus_tag=C9E96_RS20470;partial=true;product=SymE family type I addiction module toxin;pseudo=true;transl_table=11
NZ_PYJX01000205.1	RefSeq	pseudogene	2024	3235	.	+	.	ID=gene-C9E96_RS20475;Name=C9E96_RS20475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS20475;old_locus_tag=C9E96_20995;partial=true;pseudo=true;start_range=.,2024
NZ_PYJX01000205.1	Protein Homology	CDS	2024	3235	.	+	0	ID=cds-C9E96_RS20475;Parent=gene-C9E96_RS20475;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000503219.1;locus_tag=C9E96_RS20475;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,2024;transl_table=11
NZ_PYJX01000205.1	RefSeq	gene	3232	3678	.	+	.	ID=gene-C9E96_RS20480;Name=C9E96_RS20480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20480;old_locus_tag=C9E96_21000
NZ_PYJX01000205.1	Protein Homology	CDS	3232	3678	.	+	0	ID=cds-WP_000171102.1;Parent=gene-C9E96_RS20480;Dbxref=GenBank:WP_000171102.1;Name=WP_000171102.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000171103.1;locus_tag=C9E96_RS20480;product=hypothetical protein;protein_id=WP_000171102.1;transl_table=11
NZ_PYJX01000205.1	RefSeq	gene	3744	4001	.	-	.	ID=gene-C9E96_RS20485;Name=C9E96_RS20485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20485;old_locus_tag=C9E96_21005
NZ_PYJX01000205.1	Protein Homology	CDS	3744	4001	.	-	0	ID=cds-WP_080204121.1;Parent=gene-C9E96_RS20485;Dbxref=GenBank:WP_080204121.1;Name=WP_080204121.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000994230.1;locus_tag=C9E96_RS20485;product=SymE family type I addiction module toxin;protein_id=WP_080204121.1;transl_table=11
NZ_PYJX01000205.1	RefSeq	pseudogene	4138	4311	.	+	.	ID=gene-C9E96_RS24580;Name=C9E96_RS24580;end_range=4311,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24580;partial=true;pseudo=true;start_range=.,4138
NZ_PYJX01000205.1	Protein Homology	CDS	4138	4311	.	+	0	ID=cds-C9E96_RS24580;Parent=gene-C9E96_RS24580;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=4311,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459289.1;locus_tag=C9E96_RS24580;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,4138;transl_table=11
NZ_PYJX01000205.1	RefSeq	gene	5079	5354	.	+	.	ID=gene-C9E96_RS24075;Name=C9E96_RS24075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24075;old_locus_tag=C9E96_21015
NZ_PYJX01000205.1	GeneMarkS-2+	CDS	5079	5354	.	+	0	ID=cds-WP_225737025.1;Parent=gene-C9E96_RS24075;Dbxref=GenBank:WP_225737025.1;Name=WP_225737025.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS24075;product=hypothetical protein;protein_id=WP_225737025.1;transl_table=11
NZ_PYJX01000205.1	RefSeq	gene	5447	5914	.	+	.	ID=gene-C9E96_RS20500;Name=C9E96_RS20500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20500;old_locus_tag=C9E96_21020
NZ_PYJX01000205.1	Protein Homology	CDS	5447	5914	.	+	0	ID=cds-WP_080204120.1;Parent=gene-C9E96_RS20500;Dbxref=GenBank:WP_080204120.1;Name=WP_080204120.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000828176.1;locus_tag=C9E96_RS20500;product=sugar tyrosine-protein kinase;protein_id=WP_080204120.1;transl_table=11
NZ_PYJX01000205.1	RefSeq	pseudogene	5944	6098	.	+	.	ID=gene-C9E96_RS24585;Name=C9E96_RS24585;end_range=6098,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24585;old_locus_tag=C9E96_21025;partial=true;pseudo=true;start_range=.,5944
NZ_PYJX01000205.1	Protein Homology	CDS	5944	6098	.	+	0	ID=cds-C9E96_RS24585;Parent=gene-C9E96_RS24585;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=6098,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000015242.1;locus_tag=C9E96_RS24585;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,5944;transl_table=11
NZ_PYJX01000205.1	RefSeq	gene	6223	6501	.	+	.	ID=gene-C9E96_RS20510;Name=C9E96_RS20510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20510;old_locus_tag=C9E96_21030
NZ_PYJX01000205.1	Protein Homology	CDS	6223	6501	.	+	0	ID=cds-WP_012543321.1;Parent=gene-C9E96_RS20510;Dbxref=GenBank:WP_012543321.1;Name=WP_012543321.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459293.1;locus_tag=C9E96_RS20510;product=hypothetical protein;protein_id=WP_012543321.1;transl_table=11
NZ_PYJX01000205.1	RefSeq	pseudogene	6568	6882	.	-	.	ID=gene-C9E96_RS20515;Name=C9E96_RS20515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS20515;old_locus_tag=C9E96_21035;pseudo=true
NZ_PYJX01000205.1	Protein Homology	CDS	6568	6882	.	-	0	ID=cds-C9E96_RS20515;Parent=gene-C9E96_RS20515;Note=internal stop;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632802.1;locus_tag=C9E96_RS20515;product=SymE family type I addiction module toxin;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000068.1 1 6716
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000068.1	RefSeq	region	1	6716	.	+	.	ID=NZ_PYJX01000068.1:1..6716;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000068.1	RefSeq	gene	1	1398	.	-	.	ID=gene-C9E96_RS05500;Name=sbcC;gbkey=Gene;gene=sbcC;gene_biotype=protein_coding;locus_tag=C9E96_RS05500;old_locus_tag=C9E96_05625;partial=true;start_range=.,1
NZ_PYJX01000068.1	Protein Homology	CDS	1	1398	.	-	0	ID=cds-WP_135493935.1;Parent=gene-C9E96_RS05500;Dbxref=GenBank:WP_135493935.1;Name=WP_135493935.1;Ontology_term=GO:0006260,GO:0004527;gbkey=CDS;gene=sbcC;go_function=exonuclease activity|0004527||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459390.1;locus_tag=C9E96_RS05500;partial=true;product=exonuclease subunit SbcC;protein_id=WP_135493935.1;start_range=.,1;transl_table=11
NZ_PYJX01000068.1	RefSeq	gene	1395	2597	.	-	.	ID=gene-C9E96_RS05505;Name=sbcD;gbkey=Gene;gene=sbcD;gene_biotype=protein_coding;locus_tag=C9E96_RS05505;old_locus_tag=C9E96_05630
NZ_PYJX01000068.1	Protein Homology	CDS	1395	2597	.	-	0	ID=cds-WP_080203939.1;Parent=gene-C9E96_RS05505;Dbxref=GenBank:WP_080203939.1;Name=WP_080203939.1;Ontology_term=GO:0006260,GO:0006310,GO:0004527;gbkey=CDS;gene=sbcD;go_function=exonuclease activity|0004527||IEA;go_process=DNA replication|0006260||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459391.1;locus_tag=C9E96_RS05505;product=exonuclease subunit SbcD;protein_id=WP_080203939.1;transl_table=11
NZ_PYJX01000068.1	RefSeq	gene	2812	3501	.	+	.	ID=gene-C9E96_RS05510;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=C9E96_RS05510;old_locus_tag=C9E96_05635
NZ_PYJX01000068.1	Protein Homology	CDS	2812	3501	.	+	0	ID=cds-WP_000113918.1;Parent=gene-C9E96_RS05510;Dbxref=GenBank:WP_000113918.1;Name=WP_000113918.1;gbkey=CDS;gene=phoB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000113934.1;locus_tag=C9E96_RS05510;product=phosphate response regulator transcription factor PhoB;protein_id=WP_000113918.1;transl_table=11
NZ_PYJX01000068.1	RefSeq	gene	3571	4866	.	+	.	ID=gene-C9E96_RS05515;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=C9E96_RS05515;old_locus_tag=C9E96_05640
NZ_PYJX01000068.1	Protein Homology	CDS	3571	4866	.	+	0	ID=cds-WP_000893642.1;Parent=gene-C9E96_RS05515;Dbxref=GenBank:WP_000893642.1;Name=WP_000893642.1;Ontology_term=GO:0000160,GO:0006355,GO:0016310,GO:0000155,GO:0004721,GO:0016020;gbkey=CDS;gene=phoR;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,phosphoprotein phosphatase activity|0004721||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459393.1;locus_tag=C9E96_RS05515;product=phosphate regulon sensor histidine kinase PhoR;protein_id=WP_000893642.1;transl_table=11
NZ_PYJX01000068.1	RefSeq	gene	5275	6594	.	+	.	ID=gene-C9E96_RS05520;Name=brnQ;gbkey=Gene;gene=brnQ;gene_biotype=protein_coding;locus_tag=C9E96_RS05520;old_locus_tag=C9E96_05650
NZ_PYJX01000068.1	Protein Homology	CDS	5275	6594	.	+	0	ID=cds-WP_000149625.1;Parent=gene-C9E96_RS05520;Dbxref=GenBank:WP_000149625.1;Name=WP_000149625.1;gbkey=CDS;gene=brnQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459394.1;locus_tag=C9E96_RS05520;product=branched-chain amino acid transporter carrier protein BrnQ;protein_id=WP_000149625.1;transl_table=11
##sequence-region NZ_PYJX01000036.1 1 6402
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000036.1	RefSeq	region	1	6402	.	+	.	ID=NZ_PYJX01000036.1:1..6402;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000036.1	RefSeq	gene	1	143	.	+	.	ID=gene-C9E96_RS02245;Name=C9E96_RS02245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02245;old_locus_tag=C9E96_02280;partial=true;start_range=.,1
NZ_PYJX01000036.1	Protein Homology	CDS	1	143	.	+	2	ID=cds-WP_135493799.1;Parent=gene-C9E96_RS02245;Dbxref=GenBank:WP_135493799.1;Name=WP_135493799.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463305.1;locus_tag=C9E96_RS02245;partial=true;product=DUF4310 family protein;protein_id=WP_135493799.1;start_range=.,1;transl_table=11
NZ_PYJX01000036.1	RefSeq	gene	202	1335	.	+	.	ID=gene-C9E96_RS02250;Name=C9E96_RS02250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02250;old_locus_tag=C9E96_02285
NZ_PYJX01000036.1	Protein Homology	CDS	202	1335	.	+	0	ID=cds-WP_135369815.1;Parent=gene-C9E96_RS02250;Dbxref=GenBank:WP_135369815.1;Name=WP_135369815.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463306.1;locus_tag=C9E96_RS02250;product=amidohydrolase/deacetylase family metallohydrolase;protein_id=WP_135369815.1;transl_table=11
NZ_PYJX01000036.1	RefSeq	gene	1319	2437	.	+	.	ID=gene-C9E96_RS02255;Name=C9E96_RS02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02255;old_locus_tag=C9E96_02290
NZ_PYJX01000036.1	Protein Homology	CDS	1319	2437	.	+	0	ID=cds-WP_135369816.1;Parent=gene-C9E96_RS02255;Dbxref=GenBank:WP_135369816.1;Name=WP_135369816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463307.1;locus_tag=C9E96_RS02255;product=DgaE family pyridoxal phosphate-dependent ammonia lyase;protein_id=WP_135369816.1;transl_table=11
NZ_PYJX01000036.1	RefSeq	gene	2434	3174	.	+	.	ID=gene-C9E96_RS02260;Name=dagF;gbkey=Gene;gene=dagF;gene_biotype=protein_coding;locus_tag=C9E96_RS02260;old_locus_tag=C9E96_02295
NZ_PYJX01000036.1	Protein Homology	CDS	2434	3174	.	+	0	ID=cds-WP_135369817.1;Parent=gene-C9E96_RS02260;Dbxref=GenBank:WP_135369817.1;Name=WP_135369817.1;Ontology_term=GO:0008675;gbkey=CDS;gene=dagF;go_function=2-dehydro-3-deoxy-phosphogluconate aldolase activity|0008675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463308.2;locus_tag=C9E96_RS02260;product=2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_135369817.1;transl_table=11
NZ_PYJX01000036.1	RefSeq	gene	3191	5104	.	+	.	ID=gene-C9E96_RS02265;Name=C9E96_RS02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02265;old_locus_tag=C9E96_02300
NZ_PYJX01000036.1	Protein Homology	CDS	3191	5104	.	+	0	ID=cds-WP_167852879.1;Parent=gene-C9E96_RS02265;Dbxref=GenBank:WP_167852879.1;Name=WP_167852879.1;Ontology_term=GO:0006355,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463309.1;locus_tag=C9E96_RS02265;product=BglG family transcription antiterminator;protein_id=WP_167852879.1;transl_table=11
NZ_PYJX01000036.1	RefSeq	gene	5182	5424	.	+	.	ID=gene-C9E96_RS02270;Name=C9E96_RS02270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02270;old_locus_tag=C9E96_02305
NZ_PYJX01000036.1	Protein Homology	CDS	5182	5424	.	+	0	ID=cds-WP_000212724.1;Parent=gene-C9E96_RS02270;Dbxref=GenBank:WP_000212724.1;Name=WP_000212724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463310.1;locus_tag=C9E96_RS02270;product=type II toxin-antitoxin system RelB/DinJ family antitoxin;protein_id=WP_000212724.1;transl_table=11
NZ_PYJX01000036.1	RefSeq	gene	5414	5698	.	+	.	ID=gene-C9E96_RS02275;Name=C9E96_RS02275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02275;old_locus_tag=C9E96_02310
NZ_PYJX01000036.1	Protein Homology	CDS	5414	5698	.	+	0	ID=cds-WP_023243277.1;Parent=gene-C9E96_RS02275;Dbxref=GenBank:WP_023243277.1;Name=WP_023243277.1;Ontology_term=GO:0017148,GO:0004521,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=RNA endonuclease activity|0004521||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463311.1;locus_tag=C9E96_RS02275;product=type II toxin-antitoxin system RelE family toxin;protein_id=WP_023243277.1;transl_table=11
NZ_PYJX01000036.1	RefSeq	gene	5702	6166	.	-	.	ID=gene-C9E96_RS02280;Name=nrdG;gbkey=Gene;gene=nrdG;gene_biotype=protein_coding;locus_tag=C9E96_RS02280;old_locus_tag=C9E96_02315
NZ_PYJX01000036.1	Protein Homology	CDS	5702	6166	.	-	0	ID=cds-WP_023993573.1;Parent=gene-C9E96_RS02280;Dbxref=GenBank:WP_023993573.1;Name=WP_023993573.1;Ontology_term=GO:0043365,GO:0051539;gbkey=CDS;gene=nrdG;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463312.1;locus_tag=C9E96_RS02280;product=anaerobic ribonucleoside-triphosphate reductase-activating protein;protein_id=WP_023993573.1;transl_table=11
##sequence-region NZ_PYJX01000170.1 1 51452
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000170.1	RefSeq	region	1	51452	.	+	.	ID=NZ_PYJX01000170.1:1..51452;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000170.1	RefSeq	gene	1	892	.	-	.	ID=gene-C9E96_RS15970;Name=gpmI;gbkey=Gene;gene=gpmI;gene_biotype=protein_coding;locus_tag=C9E96_RS15970;old_locus_tag=C9E96_16365;partial=true;start_range=.,1
NZ_PYJX01000170.1	Protein Homology	CDS	1	892	.	-	0	ID=cds-WP_135494379.1;Parent=gene-C9E96_RS15970;Dbxref=GenBank:WP_135494379.1;Name=WP_135494379.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmI;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462604.1;locus_tag=C9E96_RS15970;partial=true;product=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase;protein_id=WP_135494379.1;start_range=.,1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	1140	1571	.	+	.	ID=gene-C9E96_RS15975;Name=C9E96_RS15975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15975;old_locus_tag=C9E96_16370
NZ_PYJX01000170.1	Protein Homology	CDS	1140	1571	.	+	0	ID=cds-WP_001156179.1;Parent=gene-C9E96_RS15975;Dbxref=GenBank:WP_001156179.1;Name=WP_001156179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462603.1;locus_tag=C9E96_RS15975;product=rhodanese-like domain-containing protein;protein_id=WP_001156179.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	1657	1908	.	+	.	ID=gene-C9E96_RS15980;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=C9E96_RS15980;old_locus_tag=C9E96_16375
NZ_PYJX01000170.1	Protein Homology	CDS	1657	1908	.	+	0	ID=cds-WP_001273795.1;Parent=gene-C9E96_RS15980;Dbxref=GenBank:WP_001273795.1;Name=WP_001273795.1;gbkey=CDS;gene=grxC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462602.1;locus_tag=C9E96_RS15980;product=glutaredoxin 3;protein_id=WP_001273795.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	1952	2419	.	+	.	ID=gene-C9E96_RS15985;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=C9E96_RS15985;old_locus_tag=C9E96_16380
NZ_PYJX01000170.1	Protein Homology	CDS	1952	2419	.	+	0	ID=cds-WP_000003370.1;Parent=gene-C9E96_RS15985;Dbxref=GenBank:WP_000003370.1;Name=WP_000003370.1;gbkey=CDS;gene=secB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015369180.1;locus_tag=C9E96_RS15985;product=protein-export chaperone SecB;protein_id=WP_000003370.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	2419	3438	.	+	.	ID=gene-C9E96_RS15990;Name=gpsA;gbkey=Gene;gene=gpsA;gene_biotype=protein_coding;locus_tag=C9E96_RS15990;old_locus_tag=C9E96_16385
NZ_PYJX01000170.1	Protein Homology	CDS	2419	3438	.	+	0	ID=cds-WP_001076596.1;Parent=gene-C9E96_RS15990;Dbxref=GenBank:WP_001076596.1;Name=WP_001076596.1;Ontology_term=GO:0006072,GO:0047952;gbkey=CDS;gene=gpsA;go_function=glycerol-3-phosphate dehydrogenase [NAD(P)+] activity|0047952||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462600.1;locus_tag=C9E96_RS15990;product=NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;protein_id=WP_001076596.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	3516	4337	.	+	.	ID=gene-C9E96_RS15995;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=C9E96_RS15995;old_locus_tag=C9E96_16390
NZ_PYJX01000170.1	Protein Homology	CDS	3516	4337	.	+	0	ID=cds-WP_001112113.1;Parent=gene-C9E96_RS15995;Dbxref=GenBank:WP_001112113.1;Name=WP_001112113.1;Ontology_term=GO:0006535,GO:0009001;gbkey=CDS;gene=cysE;go_function=serine O-acetyltransferase activity|0009001||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001112113.1;locus_tag=C9E96_RS15995;product=serine O-acetyltransferase;protein_id=WP_001112113.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	4420	5730	.	-	.	ID=gene-C9E96_RS16000;Name=C9E96_RS16000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16000;old_locus_tag=C9E96_16395
NZ_PYJX01000170.1	Protein Homology	CDS	4420	5730	.	-	0	ID=cds-WP_001092104.1;Parent=gene-C9E96_RS16000;Dbxref=GenBank:WP_001092104.1;Name=WP_001092104.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462598.1;locus_tag=C9E96_RS16000;product=MFS transporter;protein_id=WP_001092104.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	5804	7000	.	-	.	ID=gene-C9E96_RS16005;Name=C9E96_RS16005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16005;old_locus_tag=C9E96_16400
NZ_PYJX01000170.1	Protein Homology	CDS	5804	7000	.	-	0	ID=cds-WP_001218249.1;Parent=gene-C9E96_RS16005;Dbxref=GenBank:WP_001218249.1;Name=WP_001218249.1;Ontology_term=GO:0046392,GO:1903663,GO:0008867,GO:1990594;gbkey=CDS;go_function=galactarate dehydratase activity|0008867||IEA,L-altrarate dehydratase activity|1990594||IEA;go_process=galactarate catabolic process|0046392||IEA,L-altrarate catabolic process|1903663||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462597.1;locus_tag=C9E96_RS16005;product=L-talarate/galactarate dehydratase;protein_id=WP_001218249.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	7319	8323	.	+	.	ID=gene-C9E96_RS16010;Name=C9E96_RS16010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16010;old_locus_tag=C9E96_16410
NZ_PYJX01000170.1	Protein Homology	CDS	7319	8323	.	+	0	ID=cds-WP_001537635.1;Parent=gene-C9E96_RS16010;Dbxref=GenBank:WP_001537635.1;Name=WP_001537635.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462596.1;locus_tag=C9E96_RS16010;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_001537635.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	8391	8864	.	-	.	ID=gene-C9E96_RS16015;Name=trmL;gbkey=Gene;gene=trmL;gene_biotype=protein_coding;locus_tag=C9E96_RS16015;old_locus_tag=C9E96_16415
NZ_PYJX01000170.1	Protein Homology	CDS	8391	8864	.	-	0	ID=cds-WP_000932335.1;Parent=gene-C9E96_RS16015;Dbxref=GenBank:WP_000932335.1;Name=WP_000932335.1;Ontology_term=GO:0001510,GO:0008173;gbkey=CDS;gene=trmL;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000932331.1;locus_tag=C9E96_RS16015;product=tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL;protein_id=WP_000932335.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	8929	10119	.	-	.	ID=gene-C9E96_RS16020;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=C9E96_RS16020;old_locus_tag=C9E96_16420
NZ_PYJX01000170.1	Protein Homology	CDS	8929	10119	.	-	0	ID=cds-WP_135494381.1;Parent=gene-C9E96_RS16020;Dbxref=GenBank:WP_135494381.1;Name=WP_135494381.1;Ontology_term=GO:0006089,GO:0004457,GO:0010181;gbkey=CDS;gene=lldD;go_function=lactate dehydrogenase activity|0004457||IEA,FMN binding|0010181||IEA;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462594.1;locus_tag=C9E96_RS16020;product=FMN-dependent L-lactate dehydrogenase LldD;protein_id=WP_135494381.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	10116	10892	.	-	.	ID=gene-C9E96_RS16025;Name=lldR;gbkey=Gene;gene=lldR;gene_biotype=protein_coding;locus_tag=C9E96_RS16025;old_locus_tag=C9E96_16425
NZ_PYJX01000170.1	Protein Homology	CDS	10116	10892	.	-	0	ID=cds-WP_001650988.1;Parent=gene-C9E96_RS16025;Dbxref=GenBank:WP_001650988.1;Name=WP_001650988.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=lldR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462593.1;locus_tag=C9E96_RS16025;product=transcriptional regulator LldR;protein_id=WP_001650988.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	10889	12544	.	-	.	ID=gene-C9E96_RS16030;Name=lldP;gbkey=Gene;gene=lldP;gene_biotype=protein_coding;locus_tag=C9E96_RS16030;old_locus_tag=C9E96_16430
NZ_PYJX01000170.1	Protein Homology	CDS	10889	12544	.	-	0	ID=cds-WP_080203792.1;Parent=gene-C9E96_RS16030;Dbxref=GenBank:WP_080203792.1;Name=WP_080203792.1;Ontology_term=GO:0015727,GO:0015129,GO:0005886;gbkey=CDS;gene=lldP;go_component=plasma membrane|0005886||IEA;go_function=lactate transmembrane transporter activity|0015129||IEA;go_process=lactate transport|0015727||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462592.1;locus_tag=C9E96_RS16030;product=L-lactate permease;protein_id=WP_080203792.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	12843	17228	.	-	.	ID=gene-C9E96_RS16035;Name=sadA;gbkey=Gene;gene=sadA;gene_biotype=protein_coding;locus_tag=C9E96_RS16035;old_locus_tag=C9E96_16435
NZ_PYJX01000170.1	Protein Homology	CDS	12843	17228	.	-	0	ID=cds-WP_001079610.1;Parent=gene-C9E96_RS16035;Dbxref=GenBank:WP_001079610.1;Name=WP_001079610.1;gbkey=CDS;gene=sadA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462591.1;locus_tag=C9E96_RS16035;product=trimeric autotransporter adhesin SadA;protein_id=WP_001079610.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	17272	17955	.	-	.	ID=gene-C9E96_RS16040;Name=C9E96_RS16040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16040;old_locus_tag=C9E96_16440
NZ_PYJX01000170.1	Protein Homology	CDS	17272	17955	.	-	0	ID=cds-WP_000549457.1;Parent=gene-C9E96_RS16040;Dbxref=GenBank:WP_000549457.1;Name=WP_000549457.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462590.1;locus_tag=C9E96_RS16040;product=DUF3251 domain-containing protein;protein_id=WP_000549457.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	18444	18806	.	-	.	ID=gene-C9E96_RS16045;Name=C9E96_RS16045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16045;old_locus_tag=C9E96_16445
NZ_PYJX01000170.1	Protein Homology	CDS	18444	18806	.	-	0	ID=cds-WP_000665687.1;Parent=gene-C9E96_RS16045;Dbxref=GenBank:WP_000665687.1;Name=WP_000665687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462589.1;locus_tag=C9E96_RS16045;product=YibL family ribosome-associated protein;protein_id=WP_000665687.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	19096	19305	.	+	.	ID=gene-C9E96_RS16050;Name=C9E96_RS16050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16050;old_locus_tag=C9E96_16450
NZ_PYJX01000170.1	Protein Homology	CDS	19096	19305	.	+	0	ID=cds-WP_001062558.1;Parent=gene-C9E96_RS16050;Dbxref=GenBank:WP_001062558.1;Name=WP_001062558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462588.1;locus_tag=C9E96_RS16050;product=hypothetical protein;protein_id=WP_001062558.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	19315	19905	.	-	.	ID=gene-C9E96_RS16055;Name=mtlR;gbkey=Gene;gene=mtlR;gene_biotype=protein_coding;locus_tag=C9E96_RS16055;old_locus_tag=C9E96_16455
NZ_PYJX01000170.1	Protein Homology	CDS	19315	19905	.	-	0	ID=cds-WP_000193201.1;Parent=gene-C9E96_RS16055;Dbxref=GenBank:WP_000193201.1;Name=WP_000193201.1;gbkey=CDS;gene=mtlR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462587.1;locus_tag=C9E96_RS16055;product=mannitol operon repressor MtlR;protein_id=WP_000193201.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	19902	21050	.	-	.	ID=gene-C9E96_RS16060;Name=mtlD;gbkey=Gene;gene=mtlD;gene_biotype=protein_coding;locus_tag=C9E96_RS16060;old_locus_tag=C9E96_16460
NZ_PYJX01000170.1	Protein Homology	CDS	19902	21050	.	-	0	ID=cds-WP_000645393.1;Parent=gene-C9E96_RS16060;Dbxref=GenBank:WP_000645393.1;Name=WP_000645393.1;Ontology_term=GO:0019594,GO:0008926;gbkey=CDS;gene=mtlD;go_function=mannitol-1-phosphate 5-dehydrogenase activity|0008926||IEA;go_process=mannitol metabolic process|0019594||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462586.1;locus_tag=C9E96_RS16060;product=mannitol-1-phosphate 5-dehydrogenase;protein_id=WP_000645393.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	21271	23187	.	-	.	ID=gene-C9E96_RS16065;Name=mtlA;gbkey=Gene;gene=mtlA;gene_biotype=protein_coding;locus_tag=C9E96_RS16065;old_locus_tag=C9E96_16465
NZ_PYJX01000170.1	Protein Homology	CDS	21271	23187	.	-	0	ID=cds-WP_000093287.1;Parent=gene-C9E96_RS16065;Dbxref=GenBank:WP_000093287.1;Name=WP_000093287.1;gbkey=CDS;gene=mtlA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462585.1;locus_tag=C9E96_RS16065;product=PTS mannitol transporter subunit IICBA;protein_id=WP_000093287.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	23721	24083	.	+	.	ID=gene-C9E96_RS16075;Name=C9E96_RS16075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16075;old_locus_tag=C9E96_16475
NZ_PYJX01000170.1	Protein Homology	CDS	23721	24083	.	+	0	ID=cds-WP_000479642.1;Parent=gene-C9E96_RS16075;Dbxref=GenBank:WP_000479642.1;Name=WP_000479642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418055.1;locus_tag=C9E96_RS16075;product=DUF3302 domain-containing protein;protein_id=WP_000479642.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	24086	25222	.	+	.	ID=gene-C9E96_RS16080;Name=C9E96_RS16080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16080;old_locus_tag=C9E96_16480
NZ_PYJX01000170.1	Protein Homology	CDS	24086	25222	.	+	0	ID=cds-WP_000364909.1;Parent=gene-C9E96_RS16080;Dbxref=GenBank:WP_000364909.1;Name=WP_000364909.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312500.1;locus_tag=C9E96_RS16080;product=HlyD family secretion protein;protein_id=WP_000364909.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	25320	25928	.	+	.	ID=gene-C9E96_RS16085;Name=C9E96_RS16085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16085;old_locus_tag=C9E96_16485
NZ_PYJX01000170.1	Protein Homology	CDS	25320	25928	.	+	0	ID=cds-WP_000766677.1;Parent=gene-C9E96_RS16085;Dbxref=GenBank:WP_000766677.1;Name=WP_000766677.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462584.1;locus_tag=C9E96_RS16085;product=glutathione S-transferase;protein_id=WP_000766677.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	26027	27418	.	+	.	ID=gene-C9E96_RS16090;Name=selA;gbkey=Gene;gene=selA;gene_biotype=protein_coding;locus_tag=C9E96_RS16090;old_locus_tag=C9E96_16490
NZ_PYJX01000170.1	Protein Homology	CDS	26027	27418	.	+	0	ID=cds-WP_000200188.1;Parent=gene-C9E96_RS16090;Dbxref=GenBank:WP_000200188.1;Name=WP_000200188.1;Ontology_term=GO:0001514,GO:0004125,GO:0005737;gbkey=CDS;gene=selA;go_component=cytoplasm|0005737||IEA;go_function=L-seryl-tRNA(Sec) selenium transferase activity|0004125||IEA;go_process=selenocysteine incorporation|0001514||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462583.1;locus_tag=C9E96_RS16090;product=L-seryl-tRNA(Sec) selenium transferase;protein_id=WP_000200188.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	27415	29265	.	+	.	ID=gene-C9E96_RS16095;Name=selB;gbkey=Gene;gene=selB;gene_biotype=protein_coding;locus_tag=C9E96_RS16095;old_locus_tag=C9E96_16495
NZ_PYJX01000170.1	Protein Homology	CDS	27415	29265	.	+	0	ID=cds-WP_135494383.1;Parent=gene-C9E96_RS16095;Dbxref=GenBank:WP_135494383.1;Name=WP_135494383.1;Ontology_term=GO:0001514,GO:0003723,GO:0003746,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=selB;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,translation elongation factor activity|0003746||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=selenocysteine incorporation|0001514||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462582.1;locus_tag=C9E96_RS16095;product=selenocysteine-specific translation elongation factor;protein_id=WP_135494383.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	29503	30384	.	-	.	ID=gene-C9E96_RS16100;Name=C9E96_RS16100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16100;old_locus_tag=C9E96_16500
NZ_PYJX01000170.1	Protein Homology	CDS	29503	30384	.	-	0	ID=cds-WP_001188273.1;Parent=gene-C9E96_RS16100;Dbxref=GenBank:WP_001188273.1;Name=WP_001188273.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002954677.1;locus_tag=C9E96_RS16100;product=ROK family protein;protein_id=WP_001188273.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	30553	32091	.	+	.	ID=gene-C9E96_RS16105;Name=aldB;gbkey=Gene;gene=aldB;gene_biotype=protein_coding;locus_tag=C9E96_RS16105;old_locus_tag=C9E96_16505
NZ_PYJX01000170.1	Protein Homology	CDS	30553	32091	.	+	0	ID=cds-WP_000183988.1;Parent=gene-C9E96_RS16105;Dbxref=GenBank:WP_000183988.1;Name=WP_000183988.1;gbkey=CDS;gene=aldB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462580.1;locus_tag=C9E96_RS16105;product=aldehyde dehydrogenase AldB;protein_id=WP_000183988.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	32209	34164	.	-	.	ID=gene-C9E96_RS16110;Name=C9E96_RS16110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16110;old_locus_tag=C9E96_16510
NZ_PYJX01000170.1	Protein Homology	CDS	32209	34164	.	-	0	ID=cds-WP_023993477.1;Parent=gene-C9E96_RS16110;Dbxref=GenBank:WP_023993477.1;Name=WP_023993477.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462579.1;locus_tag=C9E96_RS16110;product=glycoside hydrolase family 127 protein;protein_id=WP_023993477.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	34428	35243	.	+	.	ID=gene-C9E96_RS16115;Name=C9E96_RS16115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16115;old_locus_tag=C9E96_16515
NZ_PYJX01000170.1	Protein Homology	CDS	34428	35243	.	+	0	ID=cds-WP_000891808.1;Parent=gene-C9E96_RS16115;Dbxref=GenBank:WP_000891808.1;Name=WP_000891808.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462578.1;locus_tag=C9E96_RS16115;product=AraC family transcriptional regulator;protein_id=WP_000891808.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	35404	36099	.	-	.	ID=gene-C9E96_RS16120;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=C9E96_RS16120;old_locus_tag=C9E96_16520
NZ_PYJX01000170.1	Protein Homology	CDS	35404	36099	.	-	0	ID=cds-WP_000893174.1;Parent=gene-C9E96_RS16120;Dbxref=GenBank:WP_000893174.1;Name=WP_000893174.1;Ontology_term=GO:0019568,GO:0008270,GO:0008742;gbkey=CDS;gene=araD;go_function=zinc ion binding|0008270||IEA,L-ribulose-phosphate 4-epimerase activity|0008742||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462577.1;locus_tag=C9E96_RS16120;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_000893174.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	36093	36953	.	-	.	ID=gene-C9E96_RS16125;Name=C9E96_RS16125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16125;old_locus_tag=C9E96_16525
NZ_PYJX01000170.1	Protein Homology	CDS	36093	36953	.	-	0	ID=cds-WP_023993478.1;Parent=gene-C9E96_RS16125;Dbxref=GenBank:WP_023993478.1;Name=WP_023993478.1;Ontology_term=GO:0005975,GO:0016861;gbkey=CDS;go_function=intramolecular oxidoreductase activity%2C interconverting aldoses and ketoses|0016861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462576.1;locus_tag=C9E96_RS16125;product=L-ribulose-5-phosphate 3-epimerase;protein_id=WP_023993478.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	36946	37608	.	-	.	ID=gene-C9E96_RS16130;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=C9E96_RS16130;old_locus_tag=C9E96_16530
NZ_PYJX01000170.1	Protein Homology	CDS	36946	37608	.	-	0	ID=cds-WP_135494385.1;Parent=gene-C9E96_RS16130;Dbxref=GenBank:WP_135494385.1;Name=WP_135494385.1;gbkey=CDS;gene=ulaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462575.1;locus_tag=C9E96_RS16130;product=3-keto-L-gulonate-6-phosphate decarboxylase UlaD;protein_id=WP_135494385.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	37605	39101	.	-	.	ID=gene-C9E96_RS16135;Name=C9E96_RS16135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16135;old_locus_tag=C9E96_16535
NZ_PYJX01000170.1	Protein Homology	CDS	37605	39101	.	-	0	ID=cds-WP_061378858.1;Parent=gene-C9E96_RS16135;Dbxref=GenBank:WP_061378858.1;Name=WP_061378858.1;Ontology_term=GO:0016310,GO:0005524,GO:0019200;gbkey=CDS;go_function=ATP binding|0005524||IEA,carbohydrate kinase activity|0019200||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462574.1;locus_tag=C9E96_RS16135;product=FGGY-family carbohydrate kinase;protein_id=WP_061378858.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	39105	40091	.	-	.	ID=gene-C9E96_RS16140;Name=yiaO;gbkey=Gene;gene=yiaO;gene_biotype=protein_coding;locus_tag=C9E96_RS16140;old_locus_tag=C9E96_16540
NZ_PYJX01000170.1	Protein Homology	CDS	39105	40091	.	-	0	ID=cds-WP_000766337.1;Parent=gene-C9E96_RS16140;Dbxref=GenBank:WP_000766337.1;Name=WP_000766337.1;gbkey=CDS;gene=yiaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462573.1;locus_tag=C9E96_RS16140;product=2%2C3-diketo-L-gulonate TRAP transporter substrate-binding protein YiaO;protein_id=WP_000766337.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	40103	41380	.	-	.	ID=gene-C9E96_RS16145;Name=yiaN;gbkey=Gene;gene=yiaN;gene_biotype=protein_coding;locus_tag=C9E96_RS16145;old_locus_tag=C9E96_16545
NZ_PYJX01000170.1	Protein Homology	CDS	40103	41380	.	-	0	ID=cds-WP_135494387.1;Parent=gene-C9E96_RS16145;Dbxref=GenBank:WP_135494387.1;Name=WP_135494387.1;Ontology_term=GO:0031317;gbkey=CDS;gene=yiaN;go_component=tripartite ATP-independent periplasmic transporter complex|0031317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462572.1;locus_tag=C9E96_RS16145;product=2%2C3-diketo-L-gulonate TRAP transporter large permease YiaN;protein_id=WP_135494387.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	41383	41856	.	-	.	ID=gene-C9E96_RS16150;Name=yiaM;gbkey=Gene;gene=yiaM;gene_biotype=protein_coding;locus_tag=C9E96_RS16150;old_locus_tag=C9E96_16550
NZ_PYJX01000170.1	Protein Homology	CDS	41383	41856	.	-	0	ID=cds-WP_000832316.1;Parent=gene-C9E96_RS16150;Dbxref=GenBank:WP_000832316.1;Name=WP_000832316.1;Ontology_term=GO:0031317;gbkey=CDS;gene=yiaM;go_component=tripartite ATP-independent periplasmic transporter complex|0031317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462571.1;locus_tag=C9E96_RS16150;product=2%2C3-diketo-L-gulonate TRAP transporter small permease YiaM;protein_id=WP_000832316.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	41995	42927	.	-	.	ID=gene-C9E96_RS16155;Name=C9E96_RS16155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16155;old_locus_tag=C9E96_16555
NZ_PYJX01000170.1	Protein Homology	CDS	41995	42927	.	-	0	ID=cds-WP_000794971.1;Parent=gene-C9E96_RS16155;Dbxref=GenBank:WP_000794971.1;Name=WP_000794971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462570.1;locus_tag=C9E96_RS16155;product=DUF4862 family protein;protein_id=WP_000794971.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	42951	43415	.	-	.	ID=gene-C9E96_RS16160;Name=C9E96_RS16160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16160;old_locus_tag=C9E96_16560
NZ_PYJX01000170.1	Protein Homology	CDS	42951	43415	.	-	0	ID=cds-WP_080203790.1;Parent=gene-C9E96_RS16160;Dbxref=GenBank:WP_080203790.1;Name=WP_080203790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462569.1;locus_tag=C9E96_RS16160;product=YhcH/YjgK/YiaL family protein;protein_id=WP_080203790.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	43427	44425	.	-	.	ID=gene-C9E96_RS16165;Name=yiaK;gbkey=Gene;gene=yiaK;gene_biotype=protein_coding;locus_tag=C9E96_RS16165;old_locus_tag=C9E96_16565
NZ_PYJX01000170.1	Protein Homology	CDS	43427	44425	.	-	0	ID=cds-WP_080203789.1;Parent=gene-C9E96_RS16165;Dbxref=GenBank:WP_080203789.1;Name=WP_080203789.1;Ontology_term=GO:0047559,GO:0070403;gbkey=CDS;gene=yiaK;go_function=3-dehydro-L-gulonate 2-dehydrogenase activity|0047559||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462568.1;locus_tag=C9E96_RS16165;product=3-dehydro-L-gulonate 2-dehydrogenase;protein_id=WP_080203789.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	44655	45455	.	+	.	ID=gene-C9E96_RS16170;Name=yiaJ;gbkey=Gene;gene=yiaJ;gene_biotype=protein_coding;locus_tag=C9E96_RS16170;old_locus_tag=C9E96_16570
NZ_PYJX01000170.1	Protein Homology	CDS	44655	45455	.	+	0	ID=cds-WP_000081338.1;Parent=gene-C9E96_RS16170;Dbxref=GenBank:WP_000081338.1;Name=WP_000081338.1;gbkey=CDS;gene=yiaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462567.1;locus_tag=C9E96_RS16170;product=IclR family transcriptional regulator YiaJ;protein_id=WP_000081338.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	45572	46045	.	+	.	ID=gene-C9E96_RS16175;Name=C9E96_RS16175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16175;old_locus_tag=C9E96_16575
NZ_PYJX01000170.1	Protein Homology	CDS	45572	46045	.	+	0	ID=cds-WP_080203788.1;Parent=gene-C9E96_RS16175;Dbxref=GenBank:WP_080203788.1;Name=WP_080203788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462566.1;locus_tag=C9E96_RS16175;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_080203788.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	46082	47332	.	-	.	ID=gene-C9E96_RS16180;Name=avtA;gbkey=Gene;gene=avtA;gene_biotype=protein_coding;locus_tag=C9E96_RS16180;old_locus_tag=C9E96_16580
NZ_PYJX01000170.1	Protein Homology	CDS	46082	47332	.	-	0	ID=cds-WP_080203787.1;Parent=gene-C9E96_RS16180;Dbxref=GenBank:WP_080203787.1;Name=WP_080203787.1;gbkey=CDS;gene=avtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462565.1;locus_tag=C9E96_RS16180;product=valine--pyruvate transaminase;protein_id=WP_080203787.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	47506	49533	.	-	.	ID=gene-C9E96_RS16185;Name=C9E96_RS16185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16185;old_locus_tag=C9E96_16585
NZ_PYJX01000170.1	Protein Homology	CDS	47506	49533	.	-	0	ID=cds-WP_135494389.1;Parent=gene-C9E96_RS16185;Dbxref=GenBank:WP_135494389.1;Name=WP_135494389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462564.1;locus_tag=C9E96_RS16185;product=alpha-amylase;protein_id=WP_135494389.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	gene	49849	50673	.	+	.	ID=gene-C9E96_RS16190;Name=C9E96_RS16190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16190;old_locus_tag=C9E96_16590
NZ_PYJX01000170.1	Protein Homology	CDS	49849	50673	.	+	0	ID=cds-WP_001575119.1;Parent=gene-C9E96_RS16190;Dbxref=GenBank:WP_001575119.1;Name=WP_001575119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462563.1;locus_tag=C9E96_RS16190;product=protein bax;protein_id=WP_001575119.1;transl_table=11
NZ_PYJX01000170.1	RefSeq	pseudogene	50734	51452	.	-	.	ID=gene-C9E96_RS16195;Name=xylR;end_range=51452,.;gbkey=Gene;gene=xylR;gene_biotype=pseudogene;locus_tag=C9E96_RS16195;old_locus_tag=C9E96_16595;partial=true;pseudo=true
NZ_PYJX01000170.1	Protein Homology	CDS	50734	51452	.	-	2	ID=cds-C9E96_RS16195;Parent=gene-C9E96_RS16195;Note=D-xylose enhances binding of XylR to the xyl promoter and activates transcription.%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=51452,.;gbkey=CDS;gene=xylR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462562.1;locus_tag=C9E96_RS16195;partial=true;product=D-xylose utilization transcriptional activator XylR;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000224.1 1 6272
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000224.1	RefSeq	region	1	6272	.	+	.	ID=NZ_PYJX01000224.1:1..6272;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000224.1	RefSeq	pseudogene	1	213	.	+	.	ID=gene-C9E96_RS21935;Name=C9E96_RS21935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS21935;old_locus_tag=C9E96_22475;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000224.1	Protein Homology	CDS	1	213	.	+	0	ID=cds-C9E96_RS21935;Parent=gene-C9E96_RS21935;Note=catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C phenylalanine sensitive%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001109196.1;locus_tag=C9E96_RS21935;partial=true;product=3-deoxy-7-phosphoheptulonate synthase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000224.1	RefSeq	gene	307	852	.	-	.	ID=gene-C9E96_RS21940;Name=C9E96_RS21940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21940;old_locus_tag=C9E96_22480
NZ_PYJX01000224.1	Protein Homology	CDS	307	852	.	-	0	ID=cds-WP_000970374.1;Parent=gene-C9E96_RS21940;Dbxref=GenBank:WP_000970374.1;Name=WP_000970374.1;Ontology_term=GO:0016836;gbkey=CDS;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459741.1;locus_tag=C9E96_RS21940;product=FumA C-terminus/TtdB family hydratase beta subunit;protein_id=WP_000970374.1;transl_table=11
NZ_PYJX01000224.1	RefSeq	gene	867	1712	.	-	.	ID=gene-C9E96_RS21945;Name=C9E96_RS21945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21945;old_locus_tag=C9E96_22485
NZ_PYJX01000224.1	Protein Homology	CDS	867	1712	.	-	0	ID=cds-WP_000086831.1;Parent=gene-C9E96_RS21945;Dbxref=GenBank:WP_000086831.1;Name=WP_000086831.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459742.1;locus_tag=C9E96_RS21945;product=fumarate hydratase;protein_id=WP_000086831.1;transl_table=11
NZ_PYJX01000224.1	RefSeq	gene	1842	2732	.	+	.	ID=gene-C9E96_RS21950;Name=C9E96_RS21950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21950;old_locus_tag=C9E96_22490
NZ_PYJX01000224.1	Protein Homology	CDS	1842	2732	.	+	0	ID=cds-WP_000405924.1;Parent=gene-C9E96_RS21950;Dbxref=GenBank:WP_000405924.1;Name=WP_000405924.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001539513.1;locus_tag=C9E96_RS21950;product=LysR family transcriptional regulator;protein_id=WP_000405924.1;transl_table=11
NZ_PYJX01000224.1	RefSeq	gene	2733	3716	.	-	.	ID=gene-C9E96_RS21955;Name=C9E96_RS21955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21955;old_locus_tag=C9E96_22495
NZ_PYJX01000224.1	Protein Homology	CDS	2733	3716	.	-	0	ID=cds-WP_000282119.1;Parent=gene-C9E96_RS21955;Dbxref=GenBank:WP_000282119.1;Name=WP_000282119.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459744.1;locus_tag=C9E96_RS21955;product=LysR family transcriptional regulator;protein_id=WP_000282119.1;transl_table=11
NZ_PYJX01000224.1	RefSeq	gene	3939	5207	.	+	.	ID=gene-C9E96_RS21960;Name=C9E96_RS21960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21960;old_locus_tag=C9E96_22500
NZ_PYJX01000224.1	Protein Homology	CDS	3939	5207	.	+	0	ID=cds-WP_023993907.1;Parent=gene-C9E96_RS21960;Dbxref=GenBank:WP_023993907.1;Name=WP_023993907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000074132.1;locus_tag=C9E96_RS21960;product=SLC13 family permease;protein_id=WP_023993907.1;transl_table=11
NZ_PYJX01000224.1	RefSeq	gene	5257	5505	.	+	.	ID=gene-C9E96_RS21965;Name=C9E96_RS21965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21965;old_locus_tag=C9E96_22505
NZ_PYJX01000224.1	Protein Homology	CDS	5257	5505	.	+	0	ID=cds-WP_001089087.1;Parent=gene-C9E96_RS21965;Dbxref=GenBank:WP_001089087.1;Name=WP_001089087.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459746.1;locus_tag=C9E96_RS21965;product=oxaloacetate decarboxylase subunit gamma;protein_id=WP_001089087.1;transl_table=11
NZ_PYJX01000224.1	RefSeq	gene	5521	6272	.	+	.	ID=gene-C9E96_RS21970;Name=C9E96_RS21970;end_range=6272,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21970;old_locus_tag=C9E96_22510;partial=true
NZ_PYJX01000224.1	Protein Homology	CDS	5521	6272	.	+	0	ID=cds-WP_135494626.1;Parent=gene-C9E96_RS21970;Dbxref=GenBank:WP_135494626.1;Name=WP_135494626.1;Ontology_term=GO:0003824;end_range=6272,.;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9E96_RS21970;partial=true;product=pyruvate carboxylase subunit B;protein_id=WP_135494626.1;transl_table=11
##sequence-region NZ_PYJX01000041.1 1 6238
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000041.1	RefSeq	region	1	6238	.	+	.	ID=NZ_PYJX01000041.1:1..6238;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000041.1	RefSeq	pseudogene	1	318	.	+	.	ID=gene-C9E96_RS02960;Name=C9E96_RS02960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS02960;old_locus_tag=C9E96_03005;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000041.1	Protein Homology	CDS	1	318	.	+	0	ID=cds-C9E96_RS02960;Parent=gene-C9E96_RS02960;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459015.1;locus_tag=C9E96_RS02960;partial=true;product=ubiquinol-cytochrome C chaperone family protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000041.1	RefSeq	gene	468	1034	.	+	.	ID=gene-C9E96_RS02965;Name=satP;gbkey=Gene;gene=satP;gene_biotype=protein_coding;locus_tag=C9E96_RS02965;old_locus_tag=C9E96_03010
NZ_PYJX01000041.1	Protein Homology	CDS	468	1034	.	+	0	ID=cds-WP_000528525.1;Parent=gene-C9E96_RS02965;Dbxref=GenBank:WP_000528525.1;Name=WP_000528525.1;Ontology_term=GO:0016020;gbkey=CDS;gene=satP;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459014.1;locus_tag=C9E96_RS02965;product=acetate uptake transporter;protein_id=WP_000528525.1;transl_table=11
NZ_PYJX01000041.1	RefSeq	gene	1091	1681	.	-	.	ID=gene-C9E96_RS02970;Name=mog;gbkey=Gene;gene=mog;gene_biotype=protein_coding;locus_tag=C9E96_RS02970;old_locus_tag=C9E96_03015
NZ_PYJX01000041.1	Protein Homology	CDS	1091	1681	.	-	0	ID=cds-WP_000380373.1;Parent=gene-C9E96_RS02970;Dbxref=GenBank:WP_000380373.1;Name=WP_000380373.1;Ontology_term=GO:0006777;gbkey=CDS;gene=mog;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000380375.1;locus_tag=C9E96_RS02970;product=molybdopterin adenylyltransferase;protein_id=WP_000380373.1;transl_table=11
NZ_PYJX01000041.1	RefSeq	gene	1941	2894	.	-	.	ID=gene-C9E96_RS02975;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=C9E96_RS02975;old_locus_tag=C9E96_03020
NZ_PYJX01000041.1	Protein Homology	CDS	1941	2894	.	-	0	ID=cds-WP_135493827.1;Parent=gene-C9E96_RS02975;Dbxref=GenBank:WP_135493827.1;Name=WP_135493827.1;Ontology_term=GO:0006098,GO:0004801,GO:0005737;gbkey=CDS;gene=tal;go_component=cytoplasm|0005737||IEA;go_function=transaldolase activity|0004801||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459012.1;locus_tag=C9E96_RS02975;product=transaldolase;protein_id=WP_135493827.1;transl_table=11
NZ_PYJX01000041.1	RefSeq	gene	3163	4593	.	+	.	ID=gene-C9E96_RS02980;Name=C9E96_RS02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02980;old_locus_tag=C9E96_03025
NZ_PYJX01000041.1	Protein Homology	CDS	3163	4593	.	+	0	ID=cds-WP_001113803.1;Parent=gene-C9E96_RS02980;Dbxref=GenBank:WP_001113803.1;Name=WP_001113803.1;Ontology_term=GO:0006814,GO:0006865,GO:0005283,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid:sodium symporter activity|0005283||IEA,symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459011.1;locus_tag=C9E96_RS02980;product=alanine/glycine:cation symporter family protein;protein_id=WP_001113803.1;transl_table=11
NZ_PYJX01000041.1	RefSeq	gene	4672	5445	.	+	.	ID=gene-C9E96_RS02985;Name=yaaA;gbkey=Gene;gene=yaaA;gene_biotype=protein_coding;locus_tag=C9E96_RS02985;old_locus_tag=C9E96_03030
NZ_PYJX01000041.1	Protein Homology	CDS	4672	5445	.	+	0	ID=cds-WP_000906175.1;Parent=gene-C9E96_RS02985;Dbxref=GenBank:WP_000906175.1;Name=WP_000906175.1;gbkey=CDS;gene=yaaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459010.1;locus_tag=C9E96_RS02985;product=peroxide stress protein YaaA;protein_id=WP_000906175.1;transl_table=11
NZ_PYJX01000041.1	RefSeq	gene	5538	6238	.	-	.	ID=gene-C9E96_RS02990;Name=thrC;end_range=6238,.;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=C9E96_RS02990;old_locus_tag=C9E96_03035;partial=true
NZ_PYJX01000041.1	Protein Homology	CDS	5538	6238	.	-	2	ID=cds-WP_135493829.1;Parent=gene-C9E96_RS02990;Dbxref=GenBank:WP_135493829.1;Name=WP_135493829.1;Ontology_term=GO:0009088,GO:0004795;end_range=6238,.;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459009.1;locus_tag=C9E96_RS02990;partial=true;product=threonine synthase;protein_id=WP_135493829.1;transl_table=11
##sequence-region NZ_PYJX01000175.1 1 6154
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000175.1	RefSeq	region	1	6154	.	+	.	ID=NZ_PYJX01000175.1:1..6154;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000175.1	RefSeq	pseudogene	1	153	.	-	.	ID=gene-C9E96_RS16765;Name=C9E96_RS16765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS16765;old_locus_tag=C9E96_17190;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000175.1	Protein Homology	CDS	1	153	.	-	0	ID=cds-C9E96_RS16765;Parent=gene-C9E96_RS16765;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459863.1;locus_tag=C9E96_RS16765;partial=true;product=transporter substrate-binding domain-containing protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000175.1	RefSeq	gene	390	1058	.	-	.	ID=gene-C9E96_RS16770;Name=artM;gbkey=Gene;gene=artM;gene_biotype=protein_coding;locus_tag=C9E96_RS16770;old_locus_tag=C9E96_17195
NZ_PYJX01000175.1	Protein Homology	CDS	390	1058	.	-	0	ID=cds-WP_000895393.1;Parent=gene-C9E96_RS16770;Dbxref=GenBank:WP_000895393.1;Name=WP_000895393.1;Ontology_term=GO:0071705,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=artM;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459864.1;locus_tag=C9E96_RS16770;product=arginine ABC transporter permease ArtM;protein_id=WP_000895393.1;transl_table=11
NZ_PYJX01000175.1	RefSeq	gene	1058	1774	.	-	.	ID=gene-C9E96_RS16775;Name=artQ;gbkey=Gene;gene=artQ;gene_biotype=protein_coding;locus_tag=C9E96_RS16775;old_locus_tag=C9E96_17200
NZ_PYJX01000175.1	Protein Homology	CDS	1058	1774	.	-	0	ID=cds-WP_001001677.1;Parent=gene-C9E96_RS16775;Dbxref=GenBank:WP_001001677.1;Name=WP_001001677.1;Ontology_term=GO:0055085,GO:0071705,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=artQ;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA,nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459865.1;locus_tag=C9E96_RS16775;product=arginine ABC transporter permease ArtQ;protein_id=WP_001001677.1;transl_table=11
NZ_PYJX01000175.1	RefSeq	gene	1781	2512	.	-	.	ID=gene-C9E96_RS16780;Name=artI;gbkey=Gene;gene=artI;gene_biotype=protein_coding;locus_tag=C9E96_RS16780;old_locus_tag=C9E96_17205
NZ_PYJX01000175.1	Protein Homology	CDS	1781	2512	.	-	0	ID=cds-WP_000756586.1;Parent=gene-C9E96_RS16780;Dbxref=GenBank:WP_000756586.1;Name=WP_000756586.1;Ontology_term=GO:0015424,GO:0043190;gbkey=CDS;gene=artI;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type amino acid transporter activity|0015424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459866.1;locus_tag=C9E96_RS16780;product=arginine ABC transporter substrate-binding protein ArtI;protein_id=WP_000756586.1;transl_table=11
NZ_PYJX01000175.1	RefSeq	gene	2530	3258	.	-	.	ID=gene-C9E96_RS16785;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=C9E96_RS16785;old_locus_tag=C9E96_17210
NZ_PYJX01000175.1	Protein Homology	CDS	2530	3258	.	-	0	ID=cds-WP_000027186.1;Parent=gene-C9E96_RS16785;Dbxref=GenBank:WP_000027186.1;Name=WP_000027186.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424,GO:0043190;gbkey=CDS;gene=artP;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742668.1;locus_tag=C9E96_RS16785;product=arginine ABC transporter ATP-binding protein ArtP;protein_id=WP_000027186.1;transl_table=11
NZ_PYJX01000175.1	RefSeq	gene	3488	4003	.	-	.	ID=gene-C9E96_RS16790;Name=C9E96_RS16790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16790;old_locus_tag=C9E96_17215
NZ_PYJX01000175.1	Protein Homology	CDS	3488	4003	.	-	0	ID=cds-WP_001270724.1;Parent=gene-C9E96_RS16790;Dbxref=GenBank:WP_001270724.1;Name=WP_001270724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459868.1;locus_tag=C9E96_RS16790;product=lipoprotein;protein_id=WP_001270724.1;transl_table=11
NZ_PYJX01000175.1	RefSeq	gene	4131	4454	.	+	.	ID=gene-C9E96_RS16795;Name=C9E96_RS16795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16795;old_locus_tag=C9E96_17220
NZ_PYJX01000175.1	Protein Homology	CDS	4131	4454	.	+	0	ID=cds-WP_001160725.1;Parent=gene-C9E96_RS16795;Dbxref=GenBank:WP_001160725.1;Name=WP_001160725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459907.1;locus_tag=C9E96_RS16795;product=heavy metal-binding domain-containing protein;protein_id=WP_001160725.1;transl_table=11
NZ_PYJX01000175.1	RefSeq	gene	4451	5281	.	+	.	ID=gene-C9E96_RS16800;Name=C9E96_RS16800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16800;old_locus_tag=C9E96_17225
NZ_PYJX01000175.1	Protein Homology	CDS	4451	5281	.	+	0	ID=cds-WP_001202293.1;Parent=gene-C9E96_RS16800;Dbxref=GenBank:WP_001202293.1;Name=WP_001202293.1;Ontology_term=GO:0071555,GO:0008270,GO:0008745,GO:0042834,GO:0046872;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA,peptidoglycan binding|0042834||IEA,metal ion binding|0046872||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459908.1;locus_tag=C9E96_RS16800;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_001202293.1;transl_table=11
NZ_PYJX01000175.1	RefSeq	gene	5278	6154	.	-	.	ID=gene-C9E96_RS16805;Name=C9E96_RS16805;end_range=6154,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16805;old_locus_tag=C9E96_17230;partial=true
NZ_PYJX01000175.1	Protein Homology	CDS	5278	6154	.	-	1	ID=cds-WP_135494425.1;Parent=gene-C9E96_RS16805;Dbxref=GenBank:WP_135494425.1;Name=WP_135494425.1;Ontology_term=GO:0016491,GO:0051287,GO:0070403;end_range=6154,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459909.1;locus_tag=C9E96_RS16805;partial=true;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_135494425.1;transl_table=11
##sequence-region NZ_PYJX01000222.1 1 6153
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000222.1	RefSeq	region	1	6153	.	+	.	ID=NZ_PYJX01000222.1:1..6153;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000222.1	RefSeq	gene	1	501	.	+	.	ID=gene-C9E96_RS21855;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=protein_coding;locus_tag=C9E96_RS21855;old_locus_tag=C9E96_22395;partial=true;start_range=.,1
NZ_PYJX01000222.1	Protein Homology	CDS	1	501	.	+	0	ID=cds-WP_058674085.1;Parent=gene-C9E96_RS21855;Dbxref=GenBank:WP_058674085.1;Name=WP_058674085.1;Ontology_term=GO:0017004,GO:0005524,GO:0022857;gbkey=CDS;gene=ccmA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461197.1;locus_tag=C9E96_RS21855;partial=true;product=cytochrome c biogenesis heme-transporting ATPase CcmA;protein_id=WP_058674085.1;start_range=.,1;transl_table=11
NZ_PYJX01000222.1	RefSeq	gene	498	1157	.	+	.	ID=gene-C9E96_RS21860;Name=ccmB;gbkey=Gene;gene=ccmB;gene_biotype=protein_coding;locus_tag=C9E96_RS21860;old_locus_tag=C9E96_22400
NZ_PYJX01000222.1	Protein Homology	CDS	498	1157	.	+	0	ID=cds-WP_135494617.1;Parent=gene-C9E96_RS21860;Dbxref=GenBank:WP_135494617.1;Name=WP_135494617.1;Ontology_term=GO:0015886,GO:0015232;gbkey=CDS;gene=ccmB;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461196.1;locus_tag=C9E96_RS21860;product=heme exporter protein CcmB;protein_id=WP_135494617.1;transl_table=11
NZ_PYJX01000222.1	RefSeq	gene	1209	1946	.	+	.	ID=gene-C9E96_RS21865;Name=C9E96_RS21865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21865;old_locus_tag=C9E96_22405
NZ_PYJX01000222.1	Protein Homology	CDS	1209	1946	.	+	0	ID=cds-WP_000265995.1;Parent=gene-C9E96_RS21865;Dbxref=GenBank:WP_000265995.1;Name=WP_000265995.1;Ontology_term=GO:0017004,GO:0015232,GO:0020037,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA,heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461195.1;locus_tag=C9E96_RS21865;product=heme ABC transporter permease;protein_id=WP_000265995.1;transl_table=11
NZ_PYJX01000222.1	RefSeq	gene	1943	2155	.	+	.	ID=gene-C9E96_RS21870;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=C9E96_RS21870;old_locus_tag=C9E96_22410
NZ_PYJX01000222.1	Protein Homology	CDS	1943	2155	.	+	0	ID=cds-WP_000074110.1;Parent=gene-C9E96_RS21870;Dbxref=GenBank:WP_000074110.1;Name=WP_000074110.1;Ontology_term=GO:0015886,GO:0017004,GO:0016020;gbkey=CDS;gene=ccmD;go_component=membrane|0016020||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461194.1;locus_tag=C9E96_RS21870;product=heme exporter protein CcmD;protein_id=WP_000074110.1;transl_table=11
NZ_PYJX01000222.1	RefSeq	gene	2152	2631	.	+	.	ID=gene-C9E96_RS21875;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=C9E96_RS21875;old_locus_tag=C9E96_22415
NZ_PYJX01000222.1	Protein Homology	CDS	2152	2631	.	+	0	ID=cds-WP_001053607.1;Parent=gene-C9E96_RS21875;Dbxref=GenBank:WP_001053607.1;Name=WP_001053607.1;gbkey=CDS;gene=ccmE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461193.1;locus_tag=C9E96_RS21875;product=cytochrome c maturation protein CcmE;protein_id=WP_001053607.1;transl_table=11
NZ_PYJX01000222.1	RefSeq	gene	2628	4559	.	+	.	ID=gene-C9E96_RS21880;Name=C9E96_RS21880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21880;old_locus_tag=C9E96_22420
NZ_PYJX01000222.1	Protein Homology	CDS	2628	4559	.	+	0	ID=cds-WP_000982525.1;Parent=gene-C9E96_RS21880;Dbxref=GenBank:WP_000982525.1;Name=WP_000982525.1;Ontology_term=GO:0017004,GO:0015232,GO:0020037,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=heme transmembrane transporter activity|0015232||IEA,heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461192.1;locus_tag=C9E96_RS21880;product=heme lyase CcmF/NrfE family subunit;protein_id=WP_000982525.1;transl_table=11
NZ_PYJX01000222.1	RefSeq	gene	4556	5113	.	+	.	ID=gene-C9E96_RS21885;Name=dsbE;gbkey=Gene;gene=dsbE;gene_biotype=protein_coding;locus_tag=C9E96_RS21885;old_locus_tag=C9E96_22425
NZ_PYJX01000222.1	Protein Homology	CDS	4556	5113	.	+	0	ID=cds-WP_080203974.1;Parent=gene-C9E96_RS21885;Dbxref=GenBank:WP_080203974.1;Name=WP_080203974.1;gbkey=CDS;gene=dsbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461191.1;locus_tag=C9E96_RS21885;product=thiol:disulfide interchange protein DsbE;protein_id=WP_080203974.1;transl_table=11
NZ_PYJX01000222.1	RefSeq	gene	5110	6153	.	+	.	ID=gene-C9E96_RS21890;Name=C9E96_RS21890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21890;old_locus_tag=C9E96_22430
NZ_PYJX01000222.1	Protein Homology	CDS	5110	6153	.	+	0	ID=cds-WP_119026679.1;Parent=gene-C9E96_RS21890;Dbxref=GenBank:WP_119026679.1;Name=WP_119026679.1;Ontology_term=GO:0017004,GO:0015035,GO:0046872,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=protein-disulfide reductase activity|0015035||IEA,metal ion binding|0046872||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462712.1;locus_tag=C9E96_RS21890;product=cytochrome c-type biogenesis protein CcmH;protein_id=WP_119026679.1;transl_table=11
##sequence-region NZ_PYJX01000227.1 1 5991
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000227.1	RefSeq	region	1	5991	.	+	.	ID=NZ_PYJX01000227.1:1..5991;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000227.1	RefSeq	gene	1	385	.	+	.	ID=gene-C9E96_RS22070;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=C9E96_RS22070;old_locus_tag=C9E96_22610;partial=true;start_range=.,1
NZ_PYJX01000227.1	Protein Homology	CDS	1	385	.	+	1	ID=cds-WP_135494632.1;Parent=gene-C9E96_RS22070;Dbxref=GenBank:WP_135494632.1;Name=WP_135494632.1;Ontology_term=GO:0006226,GO:0046081,GO:0000287,GO:0004170;gbkey=CDS;gene=dut;go_function=magnesium ion binding|0000287||IEA,dUTP diphosphatase activity|0004170||IEA;go_process=dUMP biosynthetic process|0006226||IEA,dUTP catabolic process|0046081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000976070.1;locus_tag=C9E96_RS22070;partial=true;product=dUTP diphosphatase;protein_id=WP_135494632.1;start_range=.,1;transl_table=11
NZ_PYJX01000227.1	RefSeq	gene	493	1089	.	+	.	ID=gene-C9E96_RS22075;Name=slmA;gbkey=Gene;gene=slmA;gene_biotype=protein_coding;locus_tag=C9E96_RS22075;old_locus_tag=C9E96_22615
NZ_PYJX01000227.1	Protein Homology	CDS	493	1089	.	+	0	ID=cds-WP_135494634.1;Parent=gene-C9E96_RS22075;Dbxref=GenBank:WP_135494634.1;Name=WP_135494634.1;Ontology_term=GO:0010974,GO:0003677;gbkey=CDS;gene=slmA;go_function=DNA binding|0003677||IEA;go_process=negative regulation of division septum assembly|0010974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000818604.1;locus_tag=C9E96_RS22075;product=nucleoid occlusion factor SlmA;protein_id=WP_135494634.1;transl_table=11
NZ_PYJX01000227.1	RefSeq	pseudogene	1167	1808	.	-	.	ID=gene-C9E96_RS22080;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=pseudogene;locus_tag=C9E96_RS22080;old_locus_tag=C9E96_22620;pseudo=true
NZ_PYJX01000227.1	Protein Homology	CDS	1167	1808	.	-	0	ID=cds-C9E96_RS22080;Parent=gene-C9E96_RS22080;Note=internal stop;Ontology_term=GO:0009220,GO:0004588;gbkey=CDS;gene=pyrE;go_function=orotate phosphoribosyltransferase activity|0004588||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462633.1;locus_tag=C9E96_RS22080;product=orotate phosphoribosyltransferase;pseudo=true;transl_table=11
NZ_PYJX01000227.1	RefSeq	gene	1887	2603	.	-	.	ID=gene-C9E96_RS22085;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=C9E96_RS22085;old_locus_tag=C9E96_22625
NZ_PYJX01000227.1	Protein Homology	CDS	1887	2603	.	-	0	ID=cds-WP_001247078.1;Parent=gene-C9E96_RS22085;Dbxref=GenBank:WP_001247078.1;Name=WP_001247078.1;Ontology_term=GO:0008033,GO:0000049,GO:0009022;gbkey=CDS;gene=rph;go_function=tRNA binding|0000049||IEA,tRNA nucleotidyltransferase activity|0009022||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006803115.1;locus_tag=C9E96_RS22085;product=ribonuclease PH;protein_id=WP_001247078.1;transl_table=11
NZ_PYJX01000227.1	RefSeq	gene	2729	3592	.	+	.	ID=gene-C9E96_RS22090;Name=C9E96_RS22090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22090;old_locus_tag=C9E96_22635
NZ_PYJX01000227.1	Protein Homology	CDS	2729	3592	.	+	0	ID=cds-WP_135494637.1;Parent=gene-C9E96_RS22090;Dbxref=GenBank:WP_135494637.1;Name=WP_135494637.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122606.1;locus_tag=C9E96_RS22090;product=YicC/YloC family endoribonuclease;protein_id=WP_135494637.1;transl_table=11
NZ_PYJX01000227.1	RefSeq	gene	3642	4544	.	-	.	ID=gene-C9E96_RS22095;Name=C9E96_RS22095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22095;old_locus_tag=C9E96_22640
NZ_PYJX01000227.1	Protein Homology	CDS	3642	4544	.	-	0	ID=cds-WP_001050859.1;Parent=gene-C9E96_RS22095;Dbxref=GenBank:WP_001050859.1;Name=WP_001050859.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462636.1;locus_tag=C9E96_RS22095;product=LysR family transcriptional regulator;protein_id=WP_001050859.1;transl_table=11
NZ_PYJX01000227.1	RefSeq	gene	4618	5499	.	+	.	ID=gene-C9E96_RS22100;Name=C9E96_RS22100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22100;old_locus_tag=C9E96_22645
NZ_PYJX01000227.1	Protein Homology	CDS	4618	5499	.	+	0	ID=cds-WP_001082966.1;Parent=gene-C9E96_RS22100;Dbxref=GenBank:WP_001082966.1;Name=WP_001082966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462637.1;locus_tag=C9E96_RS22100;product=HARLDQ motif MBL-fold protein;protein_id=WP_001082966.1;transl_table=11
NZ_PYJX01000227.1	RefSeq	gene	5750	5991	.	+	.	ID=gene-C9E96_RS22105;Name=C9E96_RS22105;end_range=5991,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22105;old_locus_tag=C9E96_22650;partial=true
NZ_PYJX01000227.1	Protein Homology	CDS	5750	5991	.	+	0	ID=cds-WP_210114534.1;Parent=gene-C9E96_RS22105;Dbxref=GenBank:WP_210114534.1;Name=WP_210114534.1;Ontology_term=GO:0016020;end_range=5991,.;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462638.1;locus_tag=C9E96_RS22105;partial=true;product=trimeric intracellular cation channel family protein;protein_id=WP_210114534.1;transl_table=11
##sequence-region NZ_PYJX01000095.1 1 5850
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000095.1	RefSeq	region	1	5850	.	+	.	ID=NZ_PYJX01000095.1:1..5850;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000095.1	RefSeq	gene	1	105	.	+	.	ID=gene-C9E96_RS08340;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9E96_RS08340;old_locus_tag=C9E96_08530;partial=true;start_range=.,1
NZ_PYJX01000095.1	cmsearch	rRNA	1	105	.	+	.	ID=rna-C9E96_RS08340;Parent=gene-C9E96_RS08340;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS08340;partial=true;product=5S ribosomal RNA;start_range=.,1
NZ_PYJX01000095.1	cmsearch	exon	1	105	.	+	.	ID=exon-C9E96_RS08340-1;Parent=rna-C9E96_RS08340;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS08340;partial=true;product=5S ribosomal RNA;start_range=.,1
NZ_PYJX01000095.1	RefSeq	gene	370	885	.	-	.	ID=gene-C9E96_RS08345;Name=mobB;gbkey=Gene;gene=mobB;gene_biotype=protein_coding;locus_tag=C9E96_RS08345;old_locus_tag=C9E96_08535
NZ_PYJX01000095.1	Protein Homology	CDS	370	885	.	-	0	ID=cds-WP_023994502.1;Parent=gene-C9E96_RS08345;Dbxref=GenBank:WP_023994502.1;Name=WP_023994502.1;Ontology_term=GO:0006777,GO:0005525;gbkey=CDS;gene=mobB;go_function=GTP binding|0005525||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462873.1;locus_tag=C9E96_RS08345;product=molybdopterin-guanine dinucleotide biosynthesis protein MobB;protein_id=WP_023994502.1;transl_table=11
NZ_PYJX01000095.1	RefSeq	gene	882	1466	.	-	.	ID=gene-C9E96_RS08350;Name=mobA;gbkey=Gene;gene=mobA;gene_biotype=protein_coding;locus_tag=C9E96_RS08350;old_locus_tag=C9E96_08540
NZ_PYJX01000095.1	Protein Homology	CDS	882	1466	.	-	0	ID=cds-WP_001046894.1;Parent=gene-C9E96_RS08350;Dbxref=GenBank:WP_001046894.1;Name=WP_001046894.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=mobA;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462874.1;locus_tag=C9E96_RS08350;product=molybdenum cofactor guanylyltransferase MobA;protein_id=WP_001046894.1;transl_table=11
NZ_PYJX01000095.1	RefSeq	gene	1536	1805	.	+	.	ID=gene-C9E96_RS08355;Name=C9E96_RS08355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08355;old_locus_tag=C9E96_08545
NZ_PYJX01000095.1	Protein Homology	CDS	1536	1805	.	+	0	ID=cds-WP_000649858.1;Parent=gene-C9E96_RS08355;Dbxref=GenBank:WP_000649858.1;Name=WP_000649858.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966571.1;locus_tag=C9E96_RS08355;product=YihD family protein;protein_id=WP_000649858.1;transl_table=11
NZ_PYJX01000095.1	RefSeq	gene	1882	2868	.	+	.	ID=gene-C9E96_RS08360;Name=C9E96_RS08360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08360;old_locus_tag=C9E96_08550
NZ_PYJX01000095.1	Protein Homology	CDS	1882	2868	.	+	0	ID=cds-WP_000999264.1;Parent=gene-C9E96_RS08360;Dbxref=GenBank:WP_000999264.1;Name=WP_000999264.1;Ontology_term=GO:0006468,GO:0004674;gbkey=CDS;go_function=protein serine/threonine kinase activity|0004674||IEA;go_process=protein phosphorylation|0006468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462876.1;locus_tag=C9E96_RS08360;product=serine/threonine protein kinase;protein_id=WP_000999264.1;transl_table=11
NZ_PYJX01000095.1	RefSeq	gene	2885	3508	.	+	.	ID=gene-C9E96_RS08365;Name=dsbA;gbkey=Gene;gene=dsbA;gene_biotype=protein_coding;locus_tag=C9E96_RS08365;old_locus_tag=C9E96_08555
NZ_PYJX01000095.1	Protein Homology	CDS	2885	3508	.	+	0	ID=cds-WP_000725364.1;Parent=gene-C9E96_RS08365;Dbxref=GenBank:WP_000725364.1;Name=WP_000725364.1;Ontology_term=GO:0016491;gbkey=CDS;gene=dsbA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462877.1;locus_tag=C9E96_RS08365;product=thiol:disulfide interchange protein DsbA;protein_id=WP_000725364.1;transl_table=11
NZ_PYJX01000095.1	RefSeq	gene	3521	4429	.	-	.	ID=gene-C9E96_RS08370;Name=C9E96_RS08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08370;old_locus_tag=C9E96_08560
NZ_PYJX01000095.1	Protein Homology	CDS	3521	4429	.	-	0	ID=cds-WP_000196902.1;Parent=gene-C9E96_RS08370;Dbxref=GenBank:WP_000196902.1;Name=WP_000196902.1;Ontology_term=GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462878.1;locus_tag=C9E96_RS08370;product=acyltransferase;protein_id=WP_000196902.1;transl_table=11
NZ_PYJX01000095.1	RefSeq	gene	4817	5850	.	+	.	ID=gene-C9E96_RS08380;Name=C9E96_RS08380;end_range=5850,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08380;old_locus_tag=C9E96_08570;partial=true
NZ_PYJX01000095.1	Protein Homology	CDS	4817	5850	.	+	0	ID=cds-WP_280951869.1;Parent=gene-C9E96_RS08380;Dbxref=GenBank:WP_280951869.1;Name=WP_280951869.1;Ontology_term=GO:0003677,GO:0008409;end_range=5850,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,5'-3' exonuclease activity|0008409||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312813.1;locus_tag=C9E96_RS08380;partial=true;product=5'-3' exonuclease;protein_id=WP_280951869.1;transl_table=11
##sequence-region NZ_PYJX01000127.1 1 5732
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000127.1	RefSeq	region	1	5732	.	+	.	ID=NZ_PYJX01000127.1:1..5732;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000127.1	RefSeq	gene	1	2033	.	+	.	ID=gene-C9E96_RS10810;Name=C9E96_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10810;old_locus_tag=C9E96_11055;partial=true;start_range=.,1
NZ_PYJX01000127.1	Protein Homology	CDS	1	2033	.	+	2	ID=cds-WP_135494190.1;Parent=gene-C9E96_RS10810;Dbxref=GenBank:WP_135494190.1;Name=WP_135494190.1;Ontology_term=GO:0010951,GO:0004866;gbkey=CDS;go_function=endopeptidase inhibitor activity|0004866||IEA;go_process=negative regulation of endopeptidase activity|0010951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461467.1;locus_tag=C9E96_RS10810;partial=true;product=alpha-2-macroglobulin family protein;protein_id=WP_135494190.1;start_range=.,1;transl_table=11
NZ_PYJX01000127.1	RefSeq	gene	2034	4349	.	+	.	ID=gene-C9E96_RS10815;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=protein_coding;locus_tag=C9E96_RS10815;old_locus_tag=C9E96_11060
NZ_PYJX01000127.1	Protein Homology	CDS	2034	4349	.	+	0	ID=cds-WP_080203854.1;Parent=gene-C9E96_RS10815;Dbxref=GenBank:WP_080203854.1;Name=WP_080203854.1;Note=penicillin-binding protein 1C;Ontology_term=GO:0009252,GO:0008658,GO:0008955;gbkey=CDS;gene=pbpC;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461466.1;locus_tag=C9E96_RS10815;product=peptidoglycan glycosyltransferase PbpC;protein_id=WP_080203854.1;transl_table=11
NZ_PYJX01000127.1	RefSeq	gene	4505	5732	.	+	.	ID=gene-C9E96_RS10820;Name=C9E96_RS10820;end_range=5732,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10820;old_locus_tag=C9E96_11065;partial=true
NZ_PYJX01000127.1	Protein Homology	CDS	4505	5732	.	+	0	ID=cds-WP_348631161.1;Parent=gene-C9E96_RS10820;Dbxref=GenBank:WP_348631161.1;Name=WP_348631161.1;Ontology_term=GO:0016491;end_range=5732,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012664463.1;locus_tag=C9E96_RS10820;partial=true;product=molybdopterin-dependent oxidoreductase;protein_id=WP_348631161.1;transl_table=11
##sequence-region NZ_PYJX01000155.1 1 5711
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000155.1	RefSeq	region	1	5711	.	+	.	ID=NZ_PYJX01000155.1:1..5711;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000155.1	RefSeq	gene	82	1761	.	-	.	ID=gene-C9E96_RS13840;Name=bcsG;gbkey=Gene;gene=bcsG;gene_biotype=protein_coding;locus_tag=C9E96_RS13840;old_locus_tag=C9E96_14175
NZ_PYJX01000155.1	Protein Homology	CDS	82	1761	.	-	0	ID=cds-WP_000192022.1;Parent=gene-C9E96_RS13840;Dbxref=GenBank:WP_000192022.1;Name=WP_000192022.1;Ontology_term=GO:0030244;gbkey=CDS;gene=bcsG;go_process=cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462525.1;locus_tag=C9E96_RS13840;product=cellulose biosynthesis protein BcsG;protein_id=WP_000192022.1;transl_table=11
NZ_PYJX01000155.1	RefSeq	gene	1758	1949	.	-	.	ID=gene-C9E96_RS13845;Name=bcsF;gbkey=Gene;gene=bcsF;gene_biotype=protein_coding;locus_tag=C9E96_RS13845;old_locus_tag=C9E96_14180
NZ_PYJX01000155.1	Protein Homology	CDS	1758	1949	.	-	0	ID=cds-WP_000988321.1;Parent=gene-C9E96_RS13845;Dbxref=GenBank:WP_000988321.1;Name=WP_000988321.1;Ontology_term=GO:0052324;gbkey=CDS;gene=bcsF;go_process=plant-type cell wall cellulose biosynthetic process|0052324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462524.1;locus_tag=C9E96_RS13845;product=cellulose biosynthesis protein BcsF;protein_id=WP_000988321.1;transl_table=11
NZ_PYJX01000155.1	RefSeq	gene	1946	3517	.	-	.	ID=gene-C9E96_RS13850;Name=bcsE;gbkey=Gene;gene=bcsE;gene_biotype=protein_coding;locus_tag=C9E96_RS13850;old_locus_tag=C9E96_14185
NZ_PYJX01000155.1	Protein Homology	CDS	1946	3517	.	-	0	ID=cds-WP_023197652.1;Parent=gene-C9E96_RS13850;Dbxref=GenBank:WP_023197652.1;Name=WP_023197652.1;Ontology_term=GO:0035438;gbkey=CDS;gene=bcsE;go_function=cyclic-di-GMP binding|0035438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462523.1;locus_tag=C9E96_RS13850;product=cellulose biosynthesis c-di-GMP-binding protein BcsE;protein_id=WP_023197652.1;transl_table=11
NZ_PYJX01000155.1	RefSeq	gene	3762	3965	.	+	.	ID=gene-C9E96_RS13855;Name=bcsR;gbkey=Gene;gene=bcsR;gene_biotype=protein_coding;locus_tag=C9E96_RS13855;old_locus_tag=C9E96_14190
NZ_PYJX01000155.1	Protein Homology	CDS	3762	3965	.	+	0	ID=cds-WP_000282616.1;Parent=gene-C9E96_RS13855;Dbxref=GenBank:WP_000282616.1;Name=WP_000282616.1;gbkey=CDS;gene=bcsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462522.1;locus_tag=C9E96_RS13855;product=cellulose biosynthesis protein BcsR;protein_id=WP_000282616.1;transl_table=11
NZ_PYJX01000155.1	RefSeq	gene	3966	4718	.	+	.	ID=gene-C9E96_RS13860;Name=bcsQ;gbkey=Gene;gene=bcsQ;gene_biotype=protein_coding;locus_tag=C9E96_RS13860;old_locus_tag=C9E96_14195
NZ_PYJX01000155.1	Protein Homology	CDS	3966	4718	.	+	0	ID=cds-WP_000996120.1;Parent=gene-C9E96_RS13860;Dbxref=GenBank:WP_000996120.1;Name=WP_000996120.1;gbkey=CDS;gene=bcsQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462521.1;locus_tag=C9E96_RS13860;product=cellulose biosynthesis protein BcsQ;protein_id=WP_000996120.1;transl_table=11
NZ_PYJX01000155.1	RefSeq	pseudogene	4715	5711	.	+	.	ID=gene-C9E96_RS13865;Name=C9E96_RS13865;end_range=5711,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13865;old_locus_tag=C9E96_14200;partial=true;pseudo=true
NZ_PYJX01000155.1	Protein Homology	CDS	4715	5711	.	+	0	ID=cds-C9E96_RS13865;Parent=gene-C9E96_RS13865;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=5711,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462520.1;locus_tag=C9E96_RS13865;partial=true;product=glycosyltransferase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000219.1 1 5616
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000219.1	RefSeq	region	1	5616	.	+	.	ID=NZ_PYJX01000219.1:1..5616;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000219.1	RefSeq	gene	1	410	.	-	.	ID=gene-C9E96_RS21805;Name=C9E96_RS21805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21805;old_locus_tag=C9E96_22345;partial=true;start_range=.,1
NZ_PYJX01000219.1	Protein Homology	CDS	1	410	.	-	0	ID=cds-WP_135494610.1;Parent=gene-C9E96_RS21805;Dbxref=GenBank:WP_135494610.1;Name=WP_135494610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460825.1;locus_tag=C9E96_RS21805;partial=true;product=DUF2514 family protein;protein_id=WP_135494610.1;start_range=.,1;transl_table=11
NZ_PYJX01000219.1	RefSeq	pseudogene	464	655	.	-	.	ID=gene-C9E96_RS21810;Name=C9E96_RS21810;end_range=655,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS21810;old_locus_tag=C9E96_22350;partial=true;pseudo=true
NZ_PYJX01000219.1	Protein Homology	CDS	464	655	.	-	0	ID=cds-C9E96_RS21810;Parent=gene-C9E96_RS21810;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=655,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459884.1;locus_tag=C9E96_RS21810;partial=true;product=glycoside hydrolase family 19 protein;pseudo=true;transl_table=11
NZ_PYJX01000219.1	RefSeq	pseudogene	644	1369	.	+	.	ID=gene-C9E96_RS24590;Name=C9E96_RS24590;end_range=1369,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24590;old_locus_tag=C9E96_22355;partial=true;pseudo=true;start_range=.,644
NZ_PYJX01000219.1	Protein Homology	CDS	644	1369	.	+	0	ID=cds-C9E96_RS24590;Parent=gene-C9E96_RS24590;Note=The RecE (also known as exonuclease VIII) pathway is an alternative pathway for the initiation of homologous recombination in Escherichia coli. The RecE pathway is activated in recB%2C recC sbcA (suppressors of recB and recC) mutants. Activation of the RecE pathway results in the production of at least two phage proteins relevant for recombinational repair. RecE is a duplex DNA-specific exonuclease which produces 3' overhangs in duplex DNA by preferentially degrading the 5'-ending strands. Recombinational repair of E.coli chromosomal DNA involves as well other proteins: RecA%2C RecF%2C RecJ%2C RecO%2C RecR%2C and RuvC.%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1369,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000023732.1;locus_tag=C9E96_RS24590;partial=true;product=exonuclease VIII;pseudo=true;start_range=.,644;transl_table=11
NZ_PYJX01000219.1	RefSeq	pseudogene	1369	2262	.	+	.	ID=gene-C9E96_RS21820;Name=C9E96_RS21820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS21820;old_locus_tag=C9E96_22360;partial=true;pseudo=true;start_range=.,1369
NZ_PYJX01000219.1	Protein Homology	CDS	1369	2262	.	+	0	ID=cds-C9E96_RS21820;Parent=gene-C9E96_RS21820;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017466154.1;locus_tag=C9E96_RS21820;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,1369;transl_table=11
NZ_PYJX01000219.1	RefSeq	gene	3200	4342	.	+	.	ID=gene-C9E96_RS21825;Name=C9E96_RS21825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21825;old_locus_tag=C9E96_22365
NZ_PYJX01000219.1	Protein Homology	CDS	3200	4342	.	+	0	ID=cds-WP_135369871.1;Parent=gene-C9E96_RS21825;Dbxref=GenBank:WP_135369871.1;Name=WP_135369871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000227815.1;locus_tag=C9E96_RS21825;product=lipopolysaccharide N-acetylglucosaminyltransferase;protein_id=WP_135369871.1;transl_table=11
NZ_PYJX01000219.1	RefSeq	gene	4513	5253	.	+	.	ID=gene-C9E96_RS21830;Name=C9E96_RS21830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21830;old_locus_tag=C9E96_22370
NZ_PYJX01000219.1	Protein Homology	CDS	4513	5253	.	+	0	ID=cds-WP_223202802.1;Parent=gene-C9E96_RS21830;Dbxref=GenBank:WP_223202802.1;Name=WP_223202802.1;Ontology_term=GO:0004518;gbkey=CDS;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003029120.1;locus_tag=C9E96_RS21830;product=GIY-YIG nuclease family protein;protein_id=WP_223202802.1;transl_table=11
NZ_PYJX01000219.1	RefSeq	gene	5498	5616	.	-	.	ID=gene-C9E96_RS21835;Name=C9E96_RS21835;end_range=5616,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21835;old_locus_tag=C9E96_22375;partial=true
NZ_PYJX01000219.1	Protein Homology	CDS	5498	5616	.	-	2	ID=cds-WP_167852903.1;Parent=gene-C9E96_RS21835;Dbxref=GenBank:WP_167852903.1;Name=WP_167852903.1;end_range=5616,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460025.1;locus_tag=C9E96_RS21835;partial=true;product=tail fiber assembly protein;protein_id=WP_167852903.1;transl_table=11
##sequence-region NZ_PYJX01000096.1 1 5479
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000096.1	RefSeq	region	1	5479	.	+	.	ID=NZ_PYJX01000096.1:1..5479;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000096.1	RefSeq	gene	102	911	.	-	.	ID=gene-C9E96_RS08385;Name=phnX;gbkey=Gene;gene=phnX;gene_biotype=protein_coding;locus_tag=C9E96_RS08385;old_locus_tag=C9E96_08575
NZ_PYJX01000096.1	Protein Homology	CDS	102	911	.	-	0	ID=cds-WP_080204111.1;Parent=gene-C9E96_RS08385;Dbxref=GenBank:WP_080204111.1;Name=WP_080204111.1;Ontology_term=GO:0019700,GO:0050194;gbkey=CDS;gene=phnX;go_function=phosphonoacetaldehyde hydrolase activity|0050194||IEA;go_process=organic phosphonate catabolic process|0019700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229535.1;locus_tag=C9E96_RS08385;product=phosphonoacetaldehyde hydrolase;protein_id=WP_080204111.1;transl_table=11
NZ_PYJX01000096.1	RefSeq	gene	921	2024	.	-	.	ID=gene-C9E96_RS08390;Name=phnW;gbkey=Gene;gene=phnW;gene_biotype=protein_coding;locus_tag=C9E96_RS08390;old_locus_tag=C9E96_08580
NZ_PYJX01000096.1	Protein Homology	CDS	921	2024	.	-	0	ID=cds-WP_023260086.1;Parent=gene-C9E96_RS08390;Dbxref=GenBank:WP_023260086.1;Name=WP_023260086.1;Ontology_term=GO:0019700,GO:0047304;gbkey=CDS;gene=phnW;go_function=2-aminoethylphosphonate-pyruvate transaminase activity|0047304||IEA;go_process=organic phosphonate catabolic process|0019700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459426.1;locus_tag=C9E96_RS08390;product=2-aminoethylphosphonate--pyruvate transaminase;protein_id=WP_023260086.1;transl_table=11
NZ_PYJX01000096.1	RefSeq	gene	2164	2883	.	+	.	ID=gene-C9E96_RS08395;Name=phnR;gbkey=Gene;gene=phnR;gene_biotype=protein_coding;locus_tag=C9E96_RS08395;old_locus_tag=C9E96_08585
NZ_PYJX01000096.1	Protein Homology	CDS	2164	2883	.	+	0	ID=cds-WP_000836268.1;Parent=gene-C9E96_RS08395;Dbxref=GenBank:WP_000836268.1;Name=WP_000836268.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=phnR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459425.1;locus_tag=C9E96_RS08395;product=phosphonate utilization transcriptional regulator PhnR;protein_id=WP_000836268.1;transl_table=11
NZ_PYJX01000096.1	RefSeq	gene	3081	4094	.	+	.	ID=gene-C9E96_RS08400;Name=phnS;gbkey=Gene;gene=phnS;gene_biotype=protein_coding;locus_tag=C9E96_RS08400;old_locus_tag=C9E96_08590
NZ_PYJX01000096.1	Protein Homology	CDS	3081	4094	.	+	0	ID=cds-WP_000778008.1;Parent=gene-C9E96_RS08400;Dbxref=GenBank:WP_000778008.1;Name=WP_000778008.1;Ontology_term=GO:0033223,GO:0033225,GO:0033226,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=phnS;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA,2-aminoethylphosphonate binding|0033226||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459424.1;locus_tag=C9E96_RS08400;product=2-aminoethylphosphonate ABC transporter substrate-binding protein;protein_id=WP_000778008.1;transl_table=11
NZ_PYJX01000096.1	RefSeq	gene	4100	5209	.	+	.	ID=gene-C9E96_RS08405;Name=phnT;gbkey=Gene;gene=phnT;gene_biotype=protein_coding;locus_tag=C9E96_RS08405;old_locus_tag=C9E96_08595
NZ_PYJX01000096.1	Protein Homology	CDS	4100	5209	.	+	0	ID=cds-WP_023994375.1;Parent=gene-C9E96_RS08405;Dbxref=GenBank:WP_023994375.1;Name=WP_023994375.1;Ontology_term=GO:0033223,GO:0005524,GO:0033225,GO:0009898,GO:0055052;gbkey=CDS;gene=phnT;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459423.1;locus_tag=C9E96_RS08405;product=2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT;protein_id=WP_023994375.1;transl_table=11
NZ_PYJX01000096.1	RefSeq	pseudogene	5212	5479	.	+	.	ID=gene-C9E96_RS08410;Name=C9E96_RS08410;end_range=5479,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS08410;old_locus_tag=C9E96_08600;partial=true;pseudo=true
NZ_PYJX01000096.1	Protein Homology	CDS	5212	5479	.	+	0	ID=cds-C9E96_RS08410;Parent=gene-C9E96_RS08410;Note=involved in the transport of 2-aminoethylphosphonate into the cell%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=5479,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459422.1;locus_tag=C9E96_RS08410;partial=true;product=2-aminoethylphosphonate ABC transporter permease subunit;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000069.1 1 51274
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000069.1	RefSeq	region	1	51274	.	+	.	ID=NZ_PYJX01000069.1:1..51274;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000069.1	RefSeq	pseudogene	1	321	.	-	.	ID=gene-C9E96_RS05525;Name=C9E96_RS05525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05525;old_locus_tag=C9E96_05655;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000069.1	Protein Homology	CDS	1	321	.	-	0	ID=cds-C9E96_RS05525;Parent=gene-C9E96_RS05525;Note=catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463325.1;locus_tag=C9E96_RS05525;partial=true;product=ornithine carbamoyltransferase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	433	1365	.	-	.	ID=gene-C9E96_RS05530;Name=arcC;gbkey=Gene;gene=arcC;gene_biotype=protein_coding;locus_tag=C9E96_RS05530;old_locus_tag=C9E96_05660
NZ_PYJX01000069.1	Protein Homology	CDS	433	1365	.	-	0	ID=cds-WP_000428751.1;Parent=gene-C9E96_RS05530;Dbxref=GenBank:WP_000428751.1;Name=WP_000428751.1;Ontology_term=GO:0006520,GO:0008804;gbkey=CDS;gene=arcC;go_function=carbamate kinase activity|0008804||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463326.1;locus_tag=C9E96_RS05530;product=carbamate kinase;protein_id=WP_000428751.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	1376	2596	.	-	.	ID=gene-C9E96_RS05535;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=protein_coding;locus_tag=C9E96_RS05535;old_locus_tag=C9E96_05665
NZ_PYJX01000069.1	Protein Homology	CDS	1376	2596	.	-	0	ID=cds-WP_000410844.1;Parent=gene-C9E96_RS05535;Dbxref=GenBank:WP_000410844.1;Name=WP_000410844.1;Ontology_term=GO:0019546,GO:0016990;gbkey=CDS;gene=arcA;go_function=arginine deiminase activity|0016990||IEA;go_process=arginine deiminase pathway|0019546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463327.1;locus_tag=C9E96_RS05535;product=arginine deiminase;protein_id=WP_000410844.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	3272	3724	.	+	.	ID=gene-C9E96_RS05545;Name=C9E96_RS05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05545;old_locus_tag=C9E96_05675
NZ_PYJX01000069.1	Protein Homology	CDS	3272	3724	.	+	0	ID=cds-WP_023194706.1;Parent=gene-C9E96_RS05545;Dbxref=GenBank:WP_023194706.1;Name=WP_023194706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463328.1;locus_tag=C9E96_RS05545;product=YhcH/YjgK/YiaL family protein;protein_id=WP_023194706.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	3798	4802	.	-	.	ID=gene-C9E96_RS05550;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=C9E96_RS05550;old_locus_tag=C9E96_05680
NZ_PYJX01000069.1	Protein Homology	CDS	3798	4802	.	-	0	ID=cds-WP_000103041.1;Parent=gene-C9E96_RS05550;Dbxref=GenBank:WP_000103041.1;Name=WP_000103041.1;Ontology_term=GO:0042450,GO:0004585;gbkey=CDS;gene=argF;go_function=ornithine carbamoyltransferase activity|0004585||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463329.1;locus_tag=C9E96_RS05550;product=ornithine carbamoyltransferase;protein_id=WP_000103041.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	4772	4951	.	-	.	ID=gene-C9E96_RS24495;Name=argL;gbkey=Gene;gene=argL;gene_biotype=protein_coding;locus_tag=C9E96_RS24495
NZ_PYJX01000069.1	Protein Homology	CDS	4772	4951	.	-	0	ID=cds-WP_394343275.1;Parent=gene-C9E96_RS24495;Dbxref=GenBank:WP_394343275.1;Name=WP_394343275.1;gbkey=CDS;gene=argL;inference=COORDINATES: protein motif:HMM:NF047283.2;locus_tag=C9E96_RS24495;product=putative translational regulatory protein ArgL;protein_id=WP_394343275.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	4968	5384	.	+	.	ID=gene-C9E96_RS05555;Name=rraB;gbkey=Gene;gene=rraB;gene_biotype=protein_coding;locus_tag=C9E96_RS05555;old_locus_tag=C9E96_05685
NZ_PYJX01000069.1	Protein Homology	CDS	4968	5384	.	+	0	ID=cds-WP_000002940.1;Parent=gene-C9E96_RS05555;Dbxref=GenBank:WP_000002940.1;Name=WP_000002940.1;gbkey=CDS;gene=rraB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463330.1;locus_tag=C9E96_RS05555;product=ribonuclease E inhibitor RraB;protein_id=WP_000002940.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	pseudogene	5396	6207	.	+	.	ID=gene-C9E96_RS05560;Name=miaE;gbkey=Gene;gene=miaE;gene_biotype=pseudogene;locus_tag=C9E96_RS05560;old_locus_tag=C9E96_05690;pseudo=true
NZ_PYJX01000069.1	Protein Homology	CDS	5396	6207	.	+	0	ID=cds-C9E96_RS05560;Parent=gene-C9E96_RS05560;Note=frameshifted;Ontology_term=GO:0006400,GO:0004497,GO:0045301,GO:0046872;gbkey=CDS;gene=miaE;go_function=monooxygenase activity|0004497||IEA,tRNA 2-(methylsulfanyl)-N(6)-isopentenyladenosine(37) hydroxylase activity|0045301||IEA,metal ion binding|0046872||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463331.1;locus_tag=C9E96_RS05560;product=tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE;pseudo=true;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	6442	6930	.	-	.	ID=gene-C9E96_RS05565;Name=C9E96_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05565;old_locus_tag=C9E96_05695
NZ_PYJX01000069.1	Protein Homology	CDS	6442	6930	.	-	0	ID=cds-WP_058108081.1;Parent=gene-C9E96_RS05565;Dbxref=GenBank:WP_058108081.1;Name=WP_058108081.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463332.1;locus_tag=C9E96_RS05565;product=DUF3617 domain-containing protein;protein_id=WP_058108081.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	7037	7540	.	-	.	ID=gene-C9E96_RS05570;Name=C9E96_RS05570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05570;old_locus_tag=C9E96_05700
NZ_PYJX01000069.1	Protein Homology	CDS	7037	7540	.	-	0	ID=cds-WP_001519079.1;Parent=gene-C9E96_RS05570;Dbxref=GenBank:WP_001519079.1;Name=WP_001519079.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463333.1;locus_tag=C9E96_RS05570;product=GNAT family N-acetyltransferase;protein_id=WP_001519079.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	7735	8922	.	+	.	ID=gene-C9E96_RS05575;Name=C9E96_RS05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05575;old_locus_tag=C9E96_05705
NZ_PYJX01000069.1	Protein Homology	CDS	7735	8922	.	+	0	ID=cds-WP_001066975.1;Parent=gene-C9E96_RS05575;Dbxref=GenBank:WP_001066975.1;Name=WP_001066975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463334.1;locus_tag=C9E96_RS05575;product=YjgN family protein;protein_id=WP_001066975.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	9064	11919	.	-	.	ID=gene-C9E96_RS05580;Name=C9E96_RS05580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05580;old_locus_tag=C9E96_05710
NZ_PYJX01000069.1	Protein Homology	CDS	9064	11919	.	-	0	ID=cds-WP_023236878.1;Parent=gene-C9E96_RS05580;Dbxref=GenBank:WP_023236878.1;Name=WP_023236878.1;Ontology_term=GO:0006438,GO:0000166,GO:0004812,GO:0004832,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,valine-tRNA ligase activity|0004832||IEA,ATP binding|0005524||IEA;go_process=valyl-tRNA aminoacylation|0006438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000416368.1;locus_tag=C9E96_RS05580;product=valine--tRNA ligase;protein_id=WP_023236878.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	11919	12362	.	-	.	ID=gene-C9E96_RS05585;Name=holC;gbkey=Gene;gene=holC;gene_biotype=protein_coding;locus_tag=C9E96_RS05585;old_locus_tag=C9E96_05715
NZ_PYJX01000069.1	Protein Homology	CDS	11919	12362	.	-	0	ID=cds-WP_001523689.1;Parent=gene-C9E96_RS05585;Dbxref=GenBank:WP_001523689.1;Name=WP_001523689.1;gbkey=CDS;gene=holC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004098129.1;locus_tag=C9E96_RS05585;product=DNA polymerase III subunit chi;protein_id=WP_001523689.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	12499	14010	.	-	.	ID=gene-C9E96_RS05590;Name=pepA;gbkey=Gene;gene=pepA;gene_biotype=protein_coding;locus_tag=C9E96_RS05590;old_locus_tag=C9E96_05720
NZ_PYJX01000069.1	Protein Homology	CDS	12499	14010	.	-	0	ID=cds-WP_135493937.1;Parent=gene-C9E96_RS05590;Dbxref=GenBank:WP_135493937.1;Name=WP_135493937.1;Ontology_term=GO:0006508,GO:0019538,GO:0030145,GO:0070006;gbkey=CDS;gene=pepA;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA,protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463337.1;locus_tag=C9E96_RS05590;product=leucyl aminopeptidase;protein_id=WP_135493937.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	14291	14341	.	+	.	ID=gene-C9E96_RS24165;Name=C9E96_RS24165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24165
NZ_PYJX01000069.1	Protein Homology	CDS	14291	14341	.	+	0	ID=cds-WP_212724070.1;Parent=gene-C9E96_RS24165;Dbxref=GenBank:WP_212724070.1;Name=WP_212724070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051214.1;locus_tag=C9E96_RS24165;product=hypothetical protein;protein_id=WP_212724070.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	14405	15505	.	+	.	ID=gene-C9E96_RS05600;Name=lptF;gbkey=Gene;gene=lptF;gene_biotype=protein_coding;locus_tag=C9E96_RS05600;old_locus_tag=C9E96_05735
NZ_PYJX01000069.1	Protein Homology	CDS	14405	15505	.	+	0	ID=cds-WP_000584132.1;Parent=gene-C9E96_RS05600;Dbxref=GenBank:WP_000584132.1;Name=WP_000584132.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptF;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463339.1;locus_tag=C9E96_RS05600;product=LPS export ABC transporter permease LptF;protein_id=WP_000584132.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	15505	16587	.	+	.	ID=gene-C9E96_RS05605;Name=lptG;gbkey=Gene;gene=lptG;gene_biotype=protein_coding;locus_tag=C9E96_RS05605;old_locus_tag=C9E96_05740
NZ_PYJX01000069.1	Protein Homology	CDS	15505	16587	.	+	0	ID=cds-WP_001182242.1;Parent=gene-C9E96_RS05605;Dbxref=GenBank:WP_001182242.1;Name=WP_001182242.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptG;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463340.1;locus_tag=C9E96_RS05605;product=LPS export ABC transporter permease LptG;protein_id=WP_001182242.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	16783	17781	.	-	.	ID=gene-C9E96_RS05610;Name=idnR;gbkey=Gene;gene=idnR;gene_biotype=protein_coding;gene_synonym=gntH,yjgS;locus_tag=C9E96_RS05610;old_locus_tag=C9E96_05745
NZ_PYJX01000069.1	Protein Homology	CDS	16783	17781	.	-	0	ID=cds-WP_001244065.1;Parent=gene-C9E96_RS05610;Dbxref=GenBank:WP_001244065.1;Name=WP_001244065.1;Ontology_term=GO:0006355,GO:0019521,GO:0003700;gbkey=CDS;gene=idnR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,D-gluconate metabolic process|0019521||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463341.1;locus_tag=C9E96_RS05610;product=DNA-binding transcriptional regulator IdnR;protein_id=WP_001244065.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	17845	19164	.	-	.	ID=gene-C9E96_RS05615;Name=idnT;gbkey=Gene;gene=idnT;gene_biotype=protein_coding;locus_tag=C9E96_RS05615;old_locus_tag=C9E96_05750
NZ_PYJX01000069.1	Protein Homology	CDS	17845	19164	.	-	0	ID=cds-WP_023993568.1;Parent=gene-C9E96_RS05615;Dbxref=GenBank:WP_023993568.1;Name=WP_023993568.1;gbkey=CDS;gene=idnT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463342.1;locus_tag=C9E96_RS05615;product=gnt-II system L-idonate transporter;protein_id=WP_023993568.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	19226	19990	.	-	.	ID=gene-C9E96_RS05620;Name=idnO;gbkey=Gene;gene=idnO;gene_biotype=protein_coding;locus_tag=C9E96_RS05620;old_locus_tag=C9E96_05755
NZ_PYJX01000069.1	Protein Homology	CDS	19226	19990	.	-	0	ID=cds-WP_023993567.1;Parent=gene-C9E96_RS05620;Dbxref=GenBank:WP_023993567.1;Name=WP_023993567.1;gbkey=CDS;gene=idnO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463343.1;locus_tag=C9E96_RS05620;product=gluconate 5-dehydrogenase;protein_id=WP_023993567.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	20015	21046	.	-	.	ID=gene-C9E96_RS05625;Name=idnD;gbkey=Gene;gene=idnD;gene_biotype=protein_coding;locus_tag=C9E96_RS05625;old_locus_tag=C9E96_05760
NZ_PYJX01000069.1	Protein Homology	CDS	20015	21046	.	-	0	ID=cds-WP_000453354.1;Parent=gene-C9E96_RS05625;Dbxref=GenBank:WP_000453354.1;Name=WP_000453354.1;gbkey=CDS;gene=idnD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463344.1;locus_tag=C9E96_RS05625;product=L-idonate 5-dehydrogenase;protein_id=WP_000453354.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	21263	21793	.	+	.	ID=gene-C9E96_RS05630;Name=idnK;gbkey=Gene;gene=idnK;gene_biotype=protein_coding;locus_tag=C9E96_RS05630;old_locus_tag=C9E96_05765
NZ_PYJX01000069.1	Protein Homology	CDS	21263	21793	.	+	0	ID=cds-WP_000896756.1;Parent=gene-C9E96_RS05630;Dbxref=GenBank:WP_000896756.1;Name=WP_000896756.1;gbkey=CDS;gene=idnK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463345.1;locus_tag=C9E96_RS05630;product=gluconokinase;protein_id=WP_000896756.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	21821	22840	.	-	.	ID=gene-C9E96_RS05635;Name=ahr;gbkey=Gene;gene=ahr;gene_biotype=protein_coding;locus_tag=C9E96_RS05635;old_locus_tag=C9E96_05770
NZ_PYJX01000069.1	Protein Homology	CDS	21821	22840	.	-	0	ID=cds-WP_080203716.1;Parent=gene-C9E96_RS05635;Dbxref=GenBank:WP_080203716.1;Name=WP_080203716.1;Ontology_term=GO:0006631,GO:0008106,GO:0016616;gbkey=CDS;gene=ahr;go_function=alcohol dehydrogenase (NADP+) activity|0008106||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463346.1;locus_tag=C9E96_RS05635;product=NADPH-dependent aldehyde reductase Ahr;protein_id=WP_080203716.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	23063	23147	.	+	.	ID=gene-C9E96_RS05640;Name=C9E96_RS05640;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS05640;old_locus_tag=C9E96_05775
NZ_PYJX01000069.1	tRNAscan-SE	tRNA	23063	23147	.	+	.	ID=rna-C9E96_RS05640;Parent=gene-C9E96_RS05640;anticodon=(pos:23097..23099);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05640;product=tRNA-Leu
NZ_PYJX01000069.1	tRNAscan-SE	exon	23063	23147	.	+	.	ID=exon-C9E96_RS05640-1;Parent=rna-C9E96_RS05640;anticodon=(pos:23097..23099);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05640;product=tRNA-Leu
NZ_PYJX01000069.1	RefSeq	pseudogene	23335	24584	.	+	.	ID=gene-C9E96_RS05645;Name=C9E96_RS05645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05645;old_locus_tag=C9E96_05780;pseudo=true
NZ_PYJX01000069.1	Protein Homology	CDS	23335	24584	.	+	0	ID=cds-C9E96_RS05645;Parent=gene-C9E96_RS05645;Note=frameshifted;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004200777.1;locus_tag=C9E96_RS05645;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	24680	25372	.	+	.	ID=gene-C9E96_RS05650;Name=C9E96_RS05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05650;old_locus_tag=C9E96_05785
NZ_PYJX01000069.1	Protein Homology	CDS	24680	25372	.	+	0	ID=cds-WP_023214691.1;Parent=gene-C9E96_RS05650;Dbxref=GenBank:WP_023214691.1;Name=WP_023214691.1;Ontology_term=GO:0009307,GO:0003677,GO:0009036;gbkey=CDS;go_function=DNA binding|0003677||IEA,type II site-specific deoxyribonuclease activity|0009036||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_023214691.1;locus_tag=C9E96_RS05650;product=SinI family restriction endonuclease;protein_id=WP_023214691.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	25404	26783	.	-	.	ID=gene-C9E96_RS05655;Name=C9E96_RS05655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05655;old_locus_tag=C9E96_05790
NZ_PYJX01000069.1	Protein Homology	CDS	25404	26783	.	-	0	ID=cds-WP_001581717.1;Parent=gene-C9E96_RS05655;Dbxref=GenBank:WP_001581717.1;Name=WP_001581717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_023262291.1;locus_tag=C9E96_RS05655;product=DNA cytosine methyltransferase;protein_id=WP_001581717.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	pseudogene	26985	28083	.	+	.	ID=gene-C9E96_RS05660;Name=C9E96_RS05660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05660;old_locus_tag=C9E96_05800;pseudo=true
NZ_PYJX01000069.1	Protein Homology	CDS	26985	28083	.	+	0	ID=cds-C9E96_RS05660;Parent=gene-C9E96_RS05660;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611505.1;locus_tag=C9E96_RS05660;product=IS3 family transposase;pseudo=true;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	28280	28996	.	-	.	ID=gene-C9E96_RS05670;Name=C9E96_RS05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05670;old_locus_tag=C9E96_05810
NZ_PYJX01000069.1	Protein Homology	CDS	28280	28996	.	-	0	ID=cds-WP_000532939.1;Parent=gene-C9E96_RS05670;Dbxref=GenBank:WP_000532939.1;Name=WP_000532939.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416490.1;locus_tag=C9E96_RS05670;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_000532939.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	29561	30328	.	-	.	ID=gene-C9E96_RS05675;Name=C9E96_RS05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05675;old_locus_tag=C9E96_05815
NZ_PYJX01000069.1	Protein Homology	CDS	29561	30328	.	-	0	ID=cds-WP_023993808.1;Parent=gene-C9E96_RS05675;Dbxref=GenBank:WP_023993808.1;Name=WP_023993808.1;Ontology_term=GO:0008152;gbkey=CDS;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459306.1;locus_tag=C9E96_RS05675;product=amidohydrolase;protein_id=WP_023993808.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	30437	32881	.	-	.	ID=gene-C9E96_RS05680;Name=fadE;gbkey=Gene;gene=fadE;gene_biotype=protein_coding;locus_tag=C9E96_RS05680;old_locus_tag=C9E96_05820
NZ_PYJX01000069.1	Protein Homology	CDS	30437	32881	.	-	0	ID=cds-WP_000973041.1;Parent=gene-C9E96_RS05680;Dbxref=GenBank:WP_000973041.1;Name=WP_000973041.1;Ontology_term=GO:0033539,GO:0003995,GO:0050660;gbkey=CDS;gene=fadE;go_function=acyl-CoA dehydrogenase activity|0003995||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=fatty acid beta-oxidation using acyl-CoA dehydrogenase|0033539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459307.1;locus_tag=C9E96_RS05680;product=acyl-CoA dehydrogenase FadE;protein_id=WP_000973041.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	33121	33699	.	+	.	ID=gene-C9E96_RS05685;Name=lpcA;gbkey=Gene;gene=lpcA;gene_biotype=protein_coding;locus_tag=C9E96_RS05685;old_locus_tag=C9E96_05825
NZ_PYJX01000069.1	Protein Homology	CDS	33121	33699	.	+	0	ID=cds-WP_000284051.1;Parent=gene-C9E96_RS05685;Dbxref=GenBank:WP_000284051.1;Name=WP_000284051.1;Ontology_term=GO:1901135,GO:0008968;gbkey=CDS;gene=lpcA;go_function=D-sedoheptulose 7-phosphate isomerase activity|0008968||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459308.1;locus_tag=C9E96_RS05685;product=D-sedoheptulose 7-phosphate isomerase;protein_id=WP_000284051.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	33912	34679	.	+	.	ID=gene-C9E96_RS05690;Name=C9E96_RS05690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05690;old_locus_tag=C9E96_05830
NZ_PYJX01000069.1	Protein Homology	CDS	33912	34679	.	+	0	ID=cds-WP_000333387.1;Parent=gene-C9E96_RS05690;Dbxref=GenBank:WP_000333387.1;Name=WP_000333387.1;Ontology_term=GO:0006541,GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459309.1;locus_tag=C9E96_RS05690;product=class II glutamine amidotransferase;protein_id=WP_000333387.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	34650	35390	.	-	.	ID=gene-C9E96_RS05695;Name=dpaA;gbkey=Gene;gene=dpaA;gene_biotype=protein_coding;locus_tag=C9E96_RS05695;old_locus_tag=C9E96_05835
NZ_PYJX01000069.1	Protein Homology	CDS	34650	35390	.	-	0	ID=cds-WP_001225658.1;Parent=gene-C9E96_RS05695;Dbxref=GenBank:WP_001225658.1;Name=WP_001225658.1;gbkey=CDS;gene=dpaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459310.1;locus_tag=C9E96_RS05695;product=peptidoglycan meso-diaminopimelic acid protein amidase;protein_id=WP_001225658.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	35640	36695	.	+	.	ID=gene-C9E96_RS05700;Name=dinB;gbkey=Gene;gene=dinB;gene_biotype=protein_coding;locus_tag=C9E96_RS05700;old_locus_tag=C9E96_05840
NZ_PYJX01000069.1	Protein Homology	CDS	35640	36695	.	+	0	ID=cds-WP_001226204.1;Parent=gene-C9E96_RS05700;Dbxref=GenBank:WP_001226204.1;Name=WP_001226204.1;Ontology_term=GO:0006281,GO:0003684,GO:0003887;gbkey=CDS;gene=dinB;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459311.1;locus_tag=C9E96_RS05700;product=DNA polymerase IV;protein_id=WP_001226204.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	36914	38053	.	+	.	ID=gene-C9E96_RS05705;Name=C9E96_RS05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05705;old_locus_tag=C9E96_05845
NZ_PYJX01000069.1	Protein Homology	CDS	36914	38053	.	+	0	ID=cds-WP_000528902.1;Parent=gene-C9E96_RS05705;Dbxref=GenBank:WP_000528902.1;Name=WP_000528902.1;Ontology_term=GO:0006415;gbkey=CDS;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006895405.1;locus_tag=C9E96_RS05705;product=RNA ligase RtcB family protein;protein_id=WP_000528902.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	38050	38664	.	+	.	ID=gene-C9E96_RS05710;Name=prfH;gbkey=Gene;gene=prfH;gene_biotype=protein_coding;locus_tag=C9E96_RS05710;old_locus_tag=C9E96_05850
NZ_PYJX01000069.1	Protein Homology	CDS	38050	38664	.	+	0	ID=cds-WP_000602086.1;Parent=gene-C9E96_RS05710;Dbxref=GenBank:WP_000602086.1;Name=WP_000602086.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfH;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459312.1;locus_tag=C9E96_RS05710;product=peptide chain release factor H;protein_id=WP_000602086.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	38820	40277	.	-	.	ID=gene-C9E96_RS05715;Name=pepD;gbkey=Gene;gene=pepD;gene_biotype=protein_coding;locus_tag=C9E96_RS05715;old_locus_tag=C9E96_05855
NZ_PYJX01000069.1	Protein Homology	CDS	38820	40277	.	-	0	ID=cds-WP_135493939.1;Parent=gene-C9E96_RS05715;Dbxref=GenBank:WP_135493939.1;Name=WP_135493939.1;Ontology_term=GO:0006508,GO:0016787;gbkey=CDS;gene=pepD;go_function=hydrolase activity|0016787||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459313.1;locus_tag=C9E96_RS05715;product=cytosol nonspecific dipeptidase;protein_id=WP_135493939.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	40526	40984	.	+	.	ID=gene-C9E96_RS05720;Name=gpt;gbkey=Gene;gene=gpt;gene_biotype=protein_coding;locus_tag=C9E96_RS05720;old_locus_tag=C9E96_05860
NZ_PYJX01000069.1	Protein Homology	CDS	40526	40984	.	+	0	ID=cds-WP_001292018.1;Parent=gene-C9E96_RS05720;Dbxref=GenBank:WP_001292018.1;Name=WP_001292018.1;Ontology_term=GO:0009116,GO:0000310;gbkey=CDS;gene=gpt;go_function=xanthine phosphoribosyltransferase activity|0000310||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459314.1;locus_tag=C9E96_RS05720;product=xanthine phosphoribosyltransferase;protein_id=WP_001292018.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	41073	42317	.	+	.	ID=gene-C9E96_RS05725;Name=frsA;gbkey=Gene;gene=frsA;gene_biotype=protein_coding;locus_tag=C9E96_RS05725;old_locus_tag=C9E96_05865
NZ_PYJX01000069.1	Protein Homology	CDS	41073	42317	.	+	0	ID=cds-WP_135369836.1;Parent=gene-C9E96_RS05725;Dbxref=GenBank:WP_135369836.1;Name=WP_135369836.1;Ontology_term=GO:0016788;gbkey=CDS;gene=frsA;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459315.1;locus_tag=C9E96_RS05725;product=esterase FrsA;protein_id=WP_135369836.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	42375	42776	.	+	.	ID=gene-C9E96_RS05730;Name=crl;gbkey=Gene;gene=crl;gene_biotype=protein_coding;locus_tag=C9E96_RS05730;old_locus_tag=C9E96_05870
NZ_PYJX01000069.1	Protein Homology	CDS	42375	42776	.	+	0	ID=cds-WP_023254786.1;Parent=gene-C9E96_RS05730;Dbxref=GenBank:WP_023254786.1;Name=WP_023254786.1;Ontology_term=GO:0045893;gbkey=CDS;gene=crl;go_process=positive regulation of DNA-templated transcription|0045893||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459316.1;locus_tag=C9E96_RS05730;product=sigma factor-binding protein Crl;protein_id=WP_023254786.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	42827	43879	.	-	.	ID=gene-C9E96_RS05735;Name=phoE;gbkey=Gene;gene=phoE;gene_biotype=protein_coding;locus_tag=C9E96_RS05735;old_locus_tag=C9E96_05875
NZ_PYJX01000069.1	Protein Homology	CDS	42827	43879	.	-	0	ID=cds-WP_001043667.1;Parent=gene-C9E96_RS05735;Dbxref=GenBank:WP_001043667.1;Name=WP_001043667.1;Ontology_term=GO:0034220,GO:0015288,GO:0016020;gbkey=CDS;gene=phoE;go_component=membrane|0016020||IEA;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459317.1;locus_tag=C9E96_RS05735;product=phosphoporin PhoE;protein_id=WP_001043667.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	44162	45265	.	+	.	ID=gene-C9E96_RS05740;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=C9E96_RS05740;old_locus_tag=C9E96_05880
NZ_PYJX01000069.1	Protein Homology	CDS	44162	45265	.	+	0	ID=cds-WP_135493940.1;Parent=gene-C9E96_RS05740;Dbxref=GenBank:WP_135493940.1;Name=WP_135493940.1;Ontology_term=GO:0006561,GO:0004349,GO:0005737;gbkey=CDS;gene=proB;go_component=cytoplasm|0005737||IEA;go_function=glutamate 5-kinase activity|0004349||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459318.1;locus_tag=C9E96_RS05740;product=glutamate 5-kinase;protein_id=WP_135493940.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	45277	46524	.	+	.	ID=gene-C9E96_RS05745;Name=proA;gbkey=Gene;gene=proA;gene_biotype=protein_coding;locus_tag=C9E96_RS05745;old_locus_tag=C9E96_05885
NZ_PYJX01000069.1	Protein Homology	CDS	45277	46524	.	+	0	ID=cds-WP_080203925.1;Parent=gene-C9E96_RS05745;Dbxref=GenBank:WP_080203925.1;Name=WP_080203925.1;Ontology_term=GO:0006561,GO:0004350;gbkey=CDS;gene=proA;go_function=glutamate-5-semialdehyde dehydrogenase activity|0004350||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459319.1;locus_tag=C9E96_RS05745;product=glutamate-5-semialdehyde dehydrogenase;protein_id=WP_080203925.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	46640	46715	.	+	.	ID=gene-C9E96_RS05750;Name=C9E96_RS05750;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS05750;old_locus_tag=C9E96_05890
NZ_PYJX01000069.1	tRNAscan-SE	tRNA	46640	46715	.	+	.	ID=rna-C9E96_RS05750;Parent=gene-C9E96_RS05750;anticodon=(pos:46673..46675);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05750;product=tRNA-Thr
NZ_PYJX01000069.1	tRNAscan-SE	exon	46640	46715	.	+	.	ID=exon-C9E96_RS05750-1;Parent=rna-C9E96_RS05750;anticodon=(pos:46673..46675);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05750;product=tRNA-Thr
NZ_PYJX01000069.1	RefSeq	pseudogene	46879	47103	.	+	.	ID=gene-C9E96_RS05755;Name=C9E96_RS05755;end_range=47103,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05755;old_locus_tag=C9E96_05895;partial=true;pseudo=true
NZ_PYJX01000069.1	Protein Homology	CDS	46879	47103	.	+	0	ID=cds-C9E96_RS05755;Parent=gene-C9E96_RS05755;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;end_range=47103,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225313.1;locus_tag=C9E96_RS05755;partial=true;product=Arm DNA-binding domain-containing protein;pseudo=true;transl_table=11
NZ_PYJX01000069.1	RefSeq	pseudogene	47017	47310	.	-	.	ID=gene-C9E96_RS05760;Name=C9E96_RS05760;end_range=47310,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05760;old_locus_tag=C9E96_05900;partial=true;pseudo=true;start_range=.,47017
NZ_PYJX01000069.1	Protein Homology	CDS	47017	47310	.	-	0	ID=cds-C9E96_RS05760;Parent=gene-C9E96_RS05760;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=47310,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477168.1;locus_tag=C9E96_RS05760;partial=true;product=hypothetical protein;pseudo=true;start_range=.,47017;transl_table=11
NZ_PYJX01000069.1	RefSeq	pseudogene	47402	47767	.	+	.	ID=gene-C9E96_RS05765;Name=C9E96_RS05765;end_range=47767,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05765;old_locus_tag=C9E96_05905;partial=true;pseudo=true;start_range=.,47402
NZ_PYJX01000069.1	Protein Homology	CDS	47402	47767	.	+	0	ID=cds-C9E96_RS05765;Parent=gene-C9E96_RS05765;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=47767,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228916.1;locus_tag=C9E96_RS05765;partial=true;product=diol dehydratase reactivase ATPase-like domain-containing protein;pseudo=true;start_range=.,47402;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	47736	47843	.	+	.	ID=gene-C9E96_RS05770;Name=C9E96_RS05770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05770;old_locus_tag=C9E96_05910
NZ_PYJX01000069.1	Protein Homology	CDS	47736	47843	.	+	0	ID=cds-WP_021294037.1;Parent=gene-C9E96_RS05770;Dbxref=GenBank:WP_021294037.1;Name=WP_021294037.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF020417.6;locus_tag=C9E96_RS05770;product=diol dehydratase reactivase ATPase-like domain-containing protein;protein_id=WP_021294037.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	47953	48276	.	+	.	ID=gene-C9E96_RS05775;Name=C9E96_RS05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05775;old_locus_tag=C9E96_05915
NZ_PYJX01000069.1	Protein Homology	CDS	47953	48276	.	+	0	ID=cds-WP_001573898.1;Parent=gene-C9E96_RS05775;Dbxref=GenBank:WP_001573898.1;Name=WP_001573898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459322.1;locus_tag=C9E96_RS05775;product=DUF1889 family protein;protein_id=WP_001573898.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	48618	49856	.	+	.	ID=gene-C9E96_RS05780;Name=C9E96_RS05780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05780;old_locus_tag=C9E96_05920
NZ_PYJX01000069.1	Protein Homology	CDS	48618	49856	.	+	0	ID=cds-WP_012543325.1;Parent=gene-C9E96_RS05780;Dbxref=GenBank:WP_012543325.1;Name=WP_012543325.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459323.3;locus_tag=C9E96_RS05780;product=MFS transporter;protein_id=WP_012543325.1;transl_table=11
NZ_PYJX01000069.1	RefSeq	gene	49988	51274	.	+	.	ID=gene-C9E96_RS05785;Name=C9E96_RS05785;end_range=51274,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05785;old_locus_tag=C9E96_05925;partial=true
NZ_PYJX01000069.1	Protein Homology	CDS	49988	51274	.	+	0	ID=cds-WP_135493942.1;Parent=gene-C9E96_RS05785;Dbxref=GenBank:WP_135493942.1;Name=WP_135493942.1;Ontology_term=GO:0009098,GO:0003861,GO:0046872,GO:0051539;end_range=51274,.;gbkey=CDS;go_function=3-isopropylmalate dehydratase activity|0003861||IEA,metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459324.1;locus_tag=C9E96_RS05785;partial=true;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_135493942.1;transl_table=11
##sequence-region NZ_PYJX01000193.1 1 5259
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000193.1	RefSeq	region	1	5259	.	+	.	ID=NZ_PYJX01000193.1:1..5259;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000193.1	RefSeq	gene	1	331	.	-	.	ID=gene-C9E96_RS19495;Name=C9E96_RS19495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19495;old_locus_tag=C9E96_20010;partial=true;start_range=.,1
NZ_PYJX01000193.1	Protein Homology	CDS	1	331	.	-	0	ID=cds-WP_210114529.1;Parent=gene-C9E96_RS19495;Dbxref=GenBank:WP_210114529.1;Name=WP_210114529.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460037.1;locus_tag=C9E96_RS19495;partial=true;product=paraquat-inducible protein A;protein_id=WP_210114529.1;start_range=.,1;transl_table=11
NZ_PYJX01000193.1	RefSeq	gene	346	2253	.	-	.	ID=gene-C9E96_RS19500;Name=C9E96_RS19500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19500;old_locus_tag=C9E96_20015
NZ_PYJX01000193.1	Protein Homology	CDS	346	2253	.	-	0	ID=cds-WP_000053051.1;Parent=gene-C9E96_RS19500;Dbxref=GenBank:WP_000053051.1;Name=WP_000053051.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000053132.1;locus_tag=C9E96_RS19500;product=ABC transporter ATP-binding protein;protein_id=WP_000053051.1;transl_table=11
NZ_PYJX01000193.1	RefSeq	gene	2266	4374	.	-	.	ID=gene-C9E96_RS19505;Name=rlmKL;gbkey=Gene;gene=rlmKL;gene_biotype=protein_coding;locus_tag=C9E96_RS19505;old_locus_tag=C9E96_20020
NZ_PYJX01000193.1	Protein Homology	CDS	2266	4374	.	-	0	ID=cds-WP_001086485.1;Parent=gene-C9E96_RS19505;Dbxref=GenBank:WP_001086485.1;Name=WP_001086485.1;Ontology_term=GO:0031167,GO:0003723,GO:0008990;gbkey=CDS;gene=rlmKL;go_function=RNA binding|0003723||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460035.1;locus_tag=C9E96_RS19505;product=bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;protein_id=WP_001086485.1;transl_table=11
NZ_PYJX01000193.1	RefSeq	pseudogene	4473	5231	.	+	.	ID=gene-C9E96_RS19510;Name=C9E96_RS19510;end_range=5231,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS19510;old_locus_tag=C9E96_20025;partial=true;pseudo=true
NZ_PYJX01000193.1	Protein Homology	CDS	4473	5231	.	+	0	ID=cds-C9E96_RS19510;Parent=gene-C9E96_RS19510;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0016661,GO:0030151,GO:0030170,GO:0043546;end_range=5231,.;gbkey=CDS;go_function=oxidoreductase activity%2C acting on other nitrogenous compounds as donors|0016661||IEA,molybdenum ion binding|0030151||IEA,pyridoxal phosphate binding|0030170||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460034.1;locus_tag=C9E96_RS19510;partial=true;product=MOSC domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000237.1 1 5191
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000237.1	RefSeq	region	1	5191	.	+	.	ID=NZ_PYJX01000237.1:1..5191;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000237.1	RefSeq	gene	1	600	.	+	.	ID=gene-C9E96_RS22585;Name=argB;gbkey=Gene;gene=argB;gene_biotype=protein_coding;locus_tag=C9E96_RS22585;old_locus_tag=C9E96_23160;partial=true;start_range=.,1
NZ_PYJX01000237.1	Protein Homology	CDS	1	600	.	+	0	ID=cds-WP_135494691.1;Parent=gene-C9E96_RS22585;Dbxref=GenBank:WP_135494691.1;Name=WP_135494691.1;Ontology_term=GO:0006592,GO:0003991,GO:0005737;gbkey=CDS;gene=argB;go_component=cytoplasm|0005737||IEA;go_function=acetylglutamate kinase activity|0003991||IEA;go_process=ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463002.3;locus_tag=C9E96_RS22585;partial=true;product=acetylglutamate kinase;protein_id=WP_135494691.1;start_range=.,1;transl_table=11
NZ_PYJX01000237.1	RefSeq	gene	718	2094	.	+	.	ID=gene-C9E96_RS22590;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=C9E96_RS22590;old_locus_tag=C9E96_23165
NZ_PYJX01000237.1	Protein Homology	CDS	718	2094	.	+	0	ID=cds-WP_020437553.1;Parent=gene-C9E96_RS22590;Dbxref=GenBank:WP_020437553.1;Name=WP_020437553.1;Ontology_term=GO:0042450,GO:0004056;gbkey=CDS;gene=argH;go_function=argininosuccinate lyase activity|0004056||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463003.1;locus_tag=C9E96_RS22590;product=argininosuccinate lyase;protein_id=WP_020437553.1;transl_table=11
NZ_PYJX01000237.1	RefSeq	gene	2379	3296	.	+	.	ID=gene-C9E96_RS22600;Name=oxyR;gbkey=Gene;gene=oxyR;gene_biotype=protein_coding;locus_tag=C9E96_RS22600;old_locus_tag=C9E96_23175
NZ_PYJX01000237.1	Protein Homology	CDS	2379	3296	.	+	0	ID=cds-WP_001025919.1;Parent=gene-C9E96_RS22600;Dbxref=GenBank:WP_001025919.1;Name=WP_001025919.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=oxyR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016831323.1;locus_tag=C9E96_RS22600;product=DNA-binding transcriptional regulator OxyR;protein_id=WP_001025919.1;transl_table=11
NZ_PYJX01000237.1	RefSeq	gene	3279	4679	.	-	.	ID=gene-C9E96_RS22605;Name=sthA;gbkey=Gene;gene=sthA;gene_biotype=protein_coding;locus_tag=C9E96_RS22605;old_locus_tag=C9E96_23180
NZ_PYJX01000237.1	Protein Homology	CDS	3279	4679	.	-	0	ID=cds-WP_001120791.1;Parent=gene-C9E96_RS22605;Dbxref=GenBank:WP_001120791.1;Name=WP_001120791.1;Ontology_term=GO:0045454,GO:0003957,GO:0050660;gbkey=CDS;gene=sthA;go_function=NAD(P)+ transhydrogenase (Si-specific) activity|0003957||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463005.1;locus_tag=C9E96_RS22605;product=Si-specific NAD(P)(+) transhydrogenase;protein_id=WP_001120791.1;transl_table=11
NZ_PYJX01000237.1	RefSeq	gene	4878	5191	.	+	.	ID=gene-C9E96_RS22610;Name=fabR;end_range=5191,.;gbkey=Gene;gene=fabR;gene_biotype=protein_coding;locus_tag=C9E96_RS22610;old_locus_tag=C9E96_23185;partial=true
NZ_PYJX01000237.1	Protein Homology	CDS	4878	5191	.	+	0	ID=cds-WP_135494694.1;Parent=gene-C9E96_RS22610;Dbxref=GenBank:WP_135494694.1;Name=WP_135494694.1;Ontology_term=GO:0003677;end_range=5191,.;gbkey=CDS;gene=fabR;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224405.1;locus_tag=C9E96_RS22610;partial=true;product=HTH-type transcriptional repressor FabR;protein_id=WP_135494694.1;transl_table=11
##sequence-region NZ_PYJX01000176.1 1 5132
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000176.1	RefSeq	region	1	5132	.	+	.	ID=NZ_PYJX01000176.1:1..5132;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000176.1	RefSeq	gene	1	499	.	-	.	ID=gene-C9E96_RS16810;Name=C9E96_RS16810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16810;old_locus_tag=C9E96_17235;partial=true;start_range=.,1
NZ_PYJX01000176.1	Protein Homology	CDS	1	499	.	-	0	ID=cds-WP_135494427.1;Parent=gene-C9E96_RS16810;Dbxref=GenBank:WP_135494427.1;Name=WP_135494427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463305.1;locus_tag=C9E96_RS16810;partial=true;product=DUF4310 family protein;protein_id=WP_135494427.1;start_range=.,1;transl_table=11
NZ_PYJX01000176.1	RefSeq	gene	511	1287	.	-	.	ID=gene-C9E96_RS16815;Name=C9E96_RS16815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16815;old_locus_tag=C9E96_17240
NZ_PYJX01000176.1	Protein Homology	CDS	511	1287	.	-	0	ID=cds-WP_000478578.1;Parent=gene-C9E96_RS16815;Dbxref=GenBank:WP_000478578.1;Name=WP_000478578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463304.1;locus_tag=C9E96_RS16815;product=DUF4311 domain-containing protein;protein_id=WP_000478578.1;transl_table=11
NZ_PYJX01000176.1	RefSeq	gene	1310	1612	.	-	.	ID=gene-C9E96_RS16820;Name=C9E96_RS16820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16820;old_locus_tag=C9E96_17245
NZ_PYJX01000176.1	Protein Homology	CDS	1310	1612	.	-	0	ID=cds-WP_000975187.1;Parent=gene-C9E96_RS16820;Dbxref=GenBank:WP_000975187.1;Name=WP_000975187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463303.1;locus_tag=C9E96_RS16820;product=DUF4312 family protein;protein_id=WP_000975187.1;transl_table=11
NZ_PYJX01000176.1	RefSeq	gene	1612	1974	.	-	.	ID=gene-C9E96_RS16825;Name=C9E96_RS16825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16825;old_locus_tag=C9E96_17250
NZ_PYJX01000176.1	Protein Homology	CDS	1612	1974	.	-	0	ID=cds-WP_000435389.1;Parent=gene-C9E96_RS16825;Dbxref=GenBank:WP_000435389.1;Name=WP_000435389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463302.1;locus_tag=C9E96_RS16825;product=SFCGS family glycine-rich protein;protein_id=WP_000435389.1;transl_table=11
NZ_PYJX01000176.1	RefSeq	gene	1985	2323	.	-	.	ID=gene-C9E96_RS16830;Name=C9E96_RS16830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16830;old_locus_tag=C9E96_17255
NZ_PYJX01000176.1	Protein Homology	CDS	1985	2323	.	-	0	ID=cds-WP_001255103.1;Parent=gene-C9E96_RS16830;Dbxref=GenBank:WP_001255103.1;Name=WP_001255103.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463301.1;locus_tag=C9E96_RS16830;product=glycine dehydrogenase;protein_id=WP_001255103.1;transl_table=11
NZ_PYJX01000176.1	RefSeq	gene	2601	2987	.	-	.	ID=gene-C9E96_RS16835;Name=cybC;gbkey=Gene;gene=cybC;gene_biotype=protein_coding;locus_tag=C9E96_RS16835;old_locus_tag=C9E96_17260
NZ_PYJX01000176.1	Protein Homology	CDS	2601	2987	.	-	0	ID=cds-WP_023216473.1;Parent=gene-C9E96_RS16835;Dbxref=GenBank:WP_023216473.1;Name=WP_023216473.1;Ontology_term=GO:0022900,GO:0005506,GO:0009055,GO:0042597;gbkey=CDS;gene=cybC;go_component=periplasmic space|0042597||IEA;go_function=iron ion binding|0005506||IEA,electron transfer activity|0009055||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463300.1;locus_tag=C9E96_RS16835;product=cytochrome b562;protein_id=WP_023216473.1;transl_table=11
NZ_PYJX01000176.1	RefSeq	gene	3086	4438	.	-	.	ID=gene-C9E96_RS16840;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=C9E96_RS16840;old_locus_tag=C9E96_17265
NZ_PYJX01000176.1	Protein Homology	CDS	3086	4438	.	-	0	ID=cds-WP_000852989.1;Parent=gene-C9E96_RS16840;Dbxref=GenBank:WP_000852989.1;Name=WP_000852989.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=pmbA;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463299.1;locus_tag=C9E96_RS16840;product=metalloprotease PmbA;protein_id=WP_000852989.1;transl_table=11
NZ_PYJX01000176.1	RefSeq	gene	4534	5085	.	+	.	ID=gene-C9E96_RS16845;Name=yjgA;gbkey=Gene;gene=yjgA;gene_biotype=protein_coding;locus_tag=C9E96_RS16845;old_locus_tag=C9E96_17270
NZ_PYJX01000176.1	Protein Homology	CDS	4534	5085	.	+	0	ID=cds-WP_000166287.1;Parent=gene-C9E96_RS16845;Dbxref=GenBank:WP_000166287.1;Name=WP_000166287.1;Ontology_term=GO:0042254;gbkey=CDS;gene=yjgA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463298.1;locus_tag=C9E96_RS16845;product=ribosome biogenesis factor YjgA;protein_id=WP_000166287.1;transl_table=11
##sequence-region NZ_PYJX01000104.1 1 5118
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000104.1	RefSeq	region	1	5118	.	+	.	ID=NZ_PYJX01000104.1:1..5118;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000104.1	RefSeq	gene	12	287	.	-	.	ID=gene-C9E96_RS08870;Name=yahO;gbkey=Gene;gene=yahO;gene_biotype=protein_coding;locus_tag=C9E96_RS08870;old_locus_tag=C9E96_09060
NZ_PYJX01000104.1	Protein Homology	CDS	12	287	.	-	0	ID=cds-WP_135494096.1;Parent=gene-C9E96_RS08870;Dbxref=GenBank:WP_135494096.1;Name=WP_135494096.1;gbkey=CDS;gene=yahO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459361.1;locus_tag=C9E96_RS08870;product=DUF1471 family periplasmic protein YahO;protein_id=WP_135494096.1;transl_table=11
NZ_PYJX01000104.1	RefSeq	gene	519	1151	.	+	.	ID=gene-C9E96_RS08875;Name=C9E96_RS08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08875;old_locus_tag=C9E96_09065
NZ_PYJX01000104.1	Protein Homology	CDS	519	1151	.	+	0	ID=cds-WP_000433131.1;Parent=gene-C9E96_RS08875;Dbxref=GenBank:WP_000433131.1;Name=WP_000433131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459360.1;locus_tag=C9E96_RS08875;product=LysE family transporter;protein_id=WP_000433131.1;transl_table=11
NZ_PYJX01000104.1	RefSeq	gene	1192	3300	.	-	.	ID=gene-C9E96_RS08880;Name=foxA;gbkey=Gene;gene=foxA;gene_biotype=protein_coding;locus_tag=C9E96_RS08880;old_locus_tag=C9E96_09070
NZ_PYJX01000104.1	Protein Homology	CDS	1192	3300	.	-	0	ID=cds-WP_135494098.1;Parent=gene-C9E96_RS08880;Dbxref=GenBank:WP_135494098.1;Name=WP_135494098.1;Ontology_term=GO:0015344,GO:0038023;gbkey=CDS;gene=foxA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459359.1;locus_tag=C9E96_RS08880;product=ferrioxamine B receptor FoxA;protein_id=WP_135494098.1;transl_table=11
NZ_PYJX01000104.1	RefSeq	gene	3446	4450	.	-	.	ID=gene-C9E96_RS08885;Name=foxR;gbkey=Gene;gene=foxR;gene_biotype=protein_coding;locus_tag=C9E96_RS08885;old_locus_tag=C9E96_09075
NZ_PYJX01000104.1	Protein Homology	CDS	3446	4450	.	-	0	ID=cds-WP_000074601.1;Parent=gene-C9E96_RS08885;Dbxref=GenBank:WP_000074601.1;Name=WP_000074601.1;gbkey=CDS;gene=foxR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459358.1;locus_tag=C9E96_RS08885;product=ferrioxamine uptake transcriptional regulator FoxR;protein_id=WP_000074601.1;transl_table=11
NZ_PYJX01000104.1	RefSeq	pseudogene	4546	4738	.	-	.	ID=gene-C9E96_RS24190;Name=C9E96_RS24190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24190;pseudo=true
NZ_PYJX01000104.1	Protein Homology	CDS	4546	4738	.	-	0	ID=cds-C9E96_RS24190;Parent=gene-C9E96_RS24190;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459357.3;locus_tag=C9E96_RS24190;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000104.1	RefSeq	gene	4657	4842	.	-	.	ID=gene-C9E96_RS24425;Name=C9E96_RS24425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24425;old_locus_tag=C9E96_09080
NZ_PYJX01000104.1	Protein Homology	CDS	4657	4842	.	-	0	ID=cds-WP_305954967.1;Parent=gene-C9E96_RS24425;Dbxref=GenBank:WP_305954967.1;Name=WP_305954967.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022085.6;locus_tag=C9E96_RS24425;product=DUF2474 domain-containing protein;protein_id=WP_305954967.1;transl_table=11
NZ_PYJX01000104.1	RefSeq	gene	4788	5118	.	-	.	ID=gene-C9E96_RS08895;Name=C9E96_RS08895;end_range=5118,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08895;old_locus_tag=C9E96_09085;partial=true
NZ_PYJX01000104.1	Protein Homology	CDS	4788	5118	.	-	1	ID=cds-WP_210114521.1;Parent=gene-C9E96_RS08895;Dbxref=GenBank:WP_210114521.1;Name=WP_210114521.1;Ontology_term=GO:0016020;end_range=5118,.;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459356.1;locus_tag=C9E96_RS08895;partial=true;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_210114521.1;transl_table=11
##sequence-region NZ_PYJX01000164.1 1 5110
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000164.1	RefSeq	region	1	5110	.	+	.	ID=NZ_PYJX01000164.1:1..5110;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000164.1	RefSeq	gene	109	960	.	-	.	ID=gene-C9E96_RS14935;Name=murI;gbkey=Gene;gene=murI;gene_biotype=protein_coding;locus_tag=C9E96_RS14935;old_locus_tag=C9E96_15315
NZ_PYJX01000164.1	Protein Homology	CDS	109	960	.	-	0	ID=cds-WP_000201805.1;Parent=gene-C9E96_RS14935;Dbxref=GenBank:WP_000201805.1;Name=WP_000201805.1;Ontology_term=GO:0008152,GO:0008881;gbkey=CDS;gene=murI;go_function=glutamate racemase activity|0008881||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463010.1;locus_tag=C9E96_RS14935;product=glutamate racemase;protein_id=WP_000201805.1;transl_table=11
NZ_PYJX01000164.1	RefSeq	gene	905	2749	.	-	.	ID=gene-C9E96_RS14940;Name=btuB;gbkey=Gene;gene=btuB;gene_biotype=protein_coding;locus_tag=C9E96_RS14940;old_locus_tag=C9E96_15320
NZ_PYJX01000164.1	Protein Homology	CDS	905	2749	.	-	0	ID=cds-WP_000591411.1;Parent=gene-C9E96_RS14940;Dbxref=GenBank:WP_000591411.1;Name=WP_000591411.1;Ontology_term=GO:0015889,GO:0015420;gbkey=CDS;gene=btuB;go_function=ABC-type vitamin B12 transporter activity|0015420||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463009.1;locus_tag=C9E96_RS14940;product=TonB-dependent vitamin B12 receptor BtuB;protein_id=WP_000591411.1;transl_table=11
NZ_PYJX01000164.1	cmsearch	riboswitch	2816	3008	.	-	.	ID=id-NZ_PYJX01000164.1:2816..3008;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYJX01000164.1	RefSeq	gene	3123	4223	.	+	.	ID=gene-C9E96_RS14945;Name=trmA;gbkey=Gene;gene=trmA;gene_biotype=protein_coding;locus_tag=C9E96_RS14945;old_locus_tag=C9E96_15325
NZ_PYJX01000164.1	Protein Homology	CDS	3123	4223	.	+	0	ID=cds-WP_000186980.1;Parent=gene-C9E96_RS14945;Dbxref=GenBank:WP_000186980.1;Name=WP_000186980.1;Ontology_term=GO:0006396,GO:0030697;gbkey=CDS;gene=trmA;go_function=tRNA (uracil(54)-C5)-methyltransferase activity%2C S-adenosyl methionine-dependent|0030697||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463008.1;locus_tag=C9E96_RS14945;product=tRNA (uridine(54)-C5)-methyltransferase TrmA;protein_id=WP_000186980.1;transl_table=11
NZ_PYJX01000164.1	RefSeq	gene	4270	4629	.	-	.	ID=gene-C9E96_RS14950;Name=C9E96_RS14950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14950;old_locus_tag=C9E96_15330
NZ_PYJX01000164.1	Protein Homology	CDS	4270	4629	.	-	0	ID=cds-WP_000813838.1;Parent=gene-C9E96_RS14950;Dbxref=GenBank:WP_000813838.1;Name=WP_000813838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463007.1;locus_tag=C9E96_RS14950;product=YijD family membrane protein;protein_id=WP_000813838.1;transl_table=11
NZ_PYJX01000164.1	RefSeq	pseudogene	4645	5110	.	-	.	ID=gene-C9E96_RS14955;Name=fabR;end_range=5110,.;gbkey=Gene;gene=fabR;gene_biotype=pseudogene;locus_tag=C9E96_RS14955;old_locus_tag=C9E96_15335;partial=true;pseudo=true
NZ_PYJX01000164.1	Protein Homology	CDS	4645	5110	.	-	1	ID=cds-C9E96_RS14955;Parent=gene-C9E96_RS14955;Note=internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0003677;end_range=5110,.;gbkey=CDS;gene=fabR;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463006.3;locus_tag=C9E96_RS14955;partial=true;product=HTH-type transcriptional repressor FabR;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000080.1 1 5098
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000080.1	RefSeq	region	1	5098	.	+	.	ID=NZ_PYJX01000080.1:1..5098;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000080.1	RefSeq	gene	145	711	.	-	.	ID=gene-C9E96_RS06830;Name=gmhB;gbkey=Gene;gene=gmhB;gene_biotype=protein_coding;locus_tag=C9E96_RS06830;old_locus_tag=C9E96_06995
NZ_PYJX01000080.1	Protein Homology	CDS	145	711	.	-	0	ID=cds-WP_023993926.1;Parent=gene-C9E96_RS06830;Dbxref=GenBank:WP_023993926.1;Name=WP_023993926.1;Ontology_term=GO:0005975,GO:0016791;gbkey=CDS;gene=gmhB;go_function=phosphatase activity|0016791||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459252.1;locus_tag=C9E96_RS06830;product=D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate 7-phosphatase;protein_id=WP_023993926.1;transl_table=11
NZ_PYJX01000080.1	RefSeq	gene	901	1932	.	+	.	ID=gene-C9E96_RS06835;Name=metN;gbkey=Gene;gene=metN;gene_biotype=protein_coding;locus_tag=C9E96_RS06835;old_locus_tag=C9E96_07000
NZ_PYJX01000080.1	Protein Homology	CDS	901	1932	.	+	0	ID=cds-WP_135494013.1;Parent=gene-C9E96_RS06835;Dbxref=GenBank:WP_135494013.1;Name=WP_135494013.1;Ontology_term=GO:0048473,GO:0005524,GO:0033232,GO:0009276;gbkey=CDS;gene=metN;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA;go_function=ATP binding|0005524||IEA,ABC-type D-methionine transporter activity|0033232||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014168731.1;locus_tag=C9E96_RS06835;product=methionine ABC transporter ATP-binding protein MetN;protein_id=WP_135494013.1;transl_table=11
NZ_PYJX01000080.1	RefSeq	gene	1925	2578	.	+	.	ID=gene-C9E96_RS06840;Name=C9E96_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06840;old_locus_tag=C9E96_07005
NZ_PYJX01000080.1	Protein Homology	CDS	1925	2578	.	+	0	ID=cds-WP_001287486.1;Parent=gene-C9E96_RS06840;Dbxref=GenBank:WP_001287486.1;Name=WP_001287486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132073.1;locus_tag=C9E96_RS06840;product=methionine ABC transporter permease MetI;protein_id=WP_001287486.1;transl_table=11
NZ_PYJX01000080.1	RefSeq	gene	2617	3432	.	+	.	ID=gene-C9E96_RS06845;Name=metQ;gbkey=Gene;gene=metQ;gene_biotype=protein_coding;locus_tag=C9E96_RS06845;old_locus_tag=C9E96_07010
NZ_PYJX01000080.1	Protein Homology	CDS	2617	3432	.	+	0	ID=cds-WP_000874215.1;Parent=gene-C9E96_RS06845;Dbxref=GenBank:WP_000874215.1;Name=WP_000874215.1;gbkey=CDS;gene=metQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459249.1;locus_tag=C9E96_RS06845;product=methionine ABC transporter substrate-binding lipoprotein MetQ;protein_id=WP_000874215.1;transl_table=11
NZ_PYJX01000080.1	RefSeq	gene	3551	3955	.	+	.	ID=gene-C9E96_RS06850;Name=rcsF;gbkey=Gene;gene=rcsF;gene_biotype=protein_coding;locus_tag=C9E96_RS06850;old_locus_tag=C9E96_07015
NZ_PYJX01000080.1	Protein Homology	CDS	3551	3955	.	+	0	ID=cds-WP_001202315.1;Parent=gene-C9E96_RS06850;Dbxref=GenBank:WP_001202315.1;Name=WP_001202315.1;gbkey=CDS;gene=rcsF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459248.1;locus_tag=C9E96_RS06850;product=Rcs stress response system protein RcsF;protein_id=WP_001202315.1;transl_table=11
NZ_PYJX01000080.1	RefSeq	gene	3952	4659	.	+	.	ID=gene-C9E96_RS06855;Name=tsaA;gbkey=Gene;gene=tsaA;gene_biotype=protein_coding;locus_tag=C9E96_RS06855;old_locus_tag=C9E96_07020
NZ_PYJX01000080.1	Protein Homology	CDS	3952	4659	.	+	0	ID=cds-WP_000093988.1;Parent=gene-C9E96_RS06855;Dbxref=GenBank:WP_000093988.1;Name=WP_000093988.1;Ontology_term=GO:0006400,GO:0008757,GO:0005737;gbkey=CDS;gene=tsaA;go_component=cytoplasm|0005737||IEA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459247.1;locus_tag=C9E96_RS06855;product=tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO;protein_id=WP_000093988.1;transl_table=11
NZ_PYJX01000080.1	RefSeq	pseudogene	4770	5075	.	+	.	ID=gene-C9E96_RS06860;Name=C9E96_RS06860;end_range=5075,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS06860;old_locus_tag=C9E96_07025;partial=true;pseudo=true
NZ_PYJX01000080.1	Protein Homology	CDS	4770	5075	.	+	0	ID=cds-C9E96_RS06860;Parent=gene-C9E96_RS06860;Note=catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=5075,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133963.1;locus_tag=C9E96_RS06860;partial=true;product=proline--tRNA ligase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000102.1 1 5087
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000102.1	RefSeq	region	1	5087	.	+	.	ID=NZ_PYJX01000102.1:1..5087;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000102.1	RefSeq	gene	2	77	.	+	.	ID=gene-C9E96_RS08810;Name=C9E96_RS08810;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08810;old_locus_tag=C9E96_09000
NZ_PYJX01000102.1	tRNAscan-SE	tRNA	2	77	.	+	.	ID=rna-C9E96_RS08810;Parent=gene-C9E96_RS08810;anticodon=(pos:35..37);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08810;product=tRNA-Lys
NZ_PYJX01000102.1	tRNAscan-SE	exon	2	77	.	+	.	ID=exon-C9E96_RS08810-1;Parent=rna-C9E96_RS08810;anticodon=(pos:35..37);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08810;product=tRNA-Lys
NZ_PYJX01000102.1	RefSeq	gene	107	232	.	+	.	ID=gene-C9E96_RS08815;Name=C9E96_RS08815;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9E96_RS08815;old_locus_tag=C9E96_09005
NZ_PYJX01000102.1	cmsearch	ncRNA	107	232	.	+	.	ID=rna-C9E96_RS08815;Parent=gene-C9E96_RS08815;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS08815;product=RtT sRNA
NZ_PYJX01000102.1	cmsearch	exon	107	232	.	+	.	ID=exon-C9E96_RS08815-1;Parent=rna-C9E96_RS08815;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS08815;product=RtT sRNA
NZ_PYJX01000102.1	RefSeq	gene	262	387	.	+	.	ID=gene-C9E96_RS08820;Name=C9E96_RS08820;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9E96_RS08820;old_locus_tag=C9E96_09010
NZ_PYJX01000102.1	cmsearch	ncRNA	262	387	.	+	.	ID=rna-C9E96_RS08820;Parent=gene-C9E96_RS08820;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS08820;product=RtT sRNA
NZ_PYJX01000102.1	cmsearch	exon	262	387	.	+	.	ID=exon-C9E96_RS08820-1;Parent=rna-C9E96_RS08820;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS08820;product=RtT sRNA
NZ_PYJX01000102.1	RefSeq	gene	682	1725	.	+	.	ID=gene-C9E96_RS08825;Name=nadA;gbkey=Gene;gene=nadA;gene_biotype=protein_coding;locus_tag=C9E96_RS08825;old_locus_tag=C9E96_09015
NZ_PYJX01000102.1	Protein Homology	CDS	682	1725	.	+	0	ID=cds-WP_023993908.1;Parent=gene-C9E96_RS08825;Dbxref=GenBank:WP_023993908.1;Name=WP_023993908.1;Ontology_term=GO:0009435,GO:0008987,GO:0051539;gbkey=CDS;gene=nadA;go_function=quinolinate synthetase A activity|0008987||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459736.1;locus_tag=C9E96_RS08825;product=quinolinate synthase NadA;protein_id=WP_023993908.1;transl_table=11
NZ_PYJX01000102.1	RefSeq	gene	1750	2469	.	+	.	ID=gene-C9E96_RS08830;Name=pnuC;gbkey=Gene;gene=pnuC;gene_biotype=protein_coding;locus_tag=C9E96_RS08830;old_locus_tag=C9E96_09020
NZ_PYJX01000102.1	Protein Homology	CDS	1750	2469	.	+	0	ID=cds-WP_000345361.1;Parent=gene-C9E96_RS08830;Dbxref=GenBank:WP_000345361.1;Name=WP_000345361.1;Ontology_term=GO:0015890,GO:0015663,GO:0016020;gbkey=CDS;gene=pnuC;go_component=membrane|0016020||IEA;go_function=nicotinamide mononucleotide transmembrane transporter activity|0015663||IEA;go_process=nicotinamide mononucleotide transport|0015890||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459737.1;locus_tag=C9E96_RS08830;product=nicotinamide riboside transporter PnuC;protein_id=WP_000345361.1;transl_table=11
NZ_PYJX01000102.1	RefSeq	gene	2466	3404	.	-	.	ID=gene-C9E96_RS08835;Name=zitB;gbkey=Gene;gene=zitB;gene_biotype=protein_coding;locus_tag=C9E96_RS08835;old_locus_tag=C9E96_09025
NZ_PYJX01000102.1	Protein Homology	CDS	2466	3404	.	-	0	ID=cds-WP_000951250.1;Parent=gene-C9E96_RS08835;Dbxref=GenBank:WP_000951250.1;Name=WP_000951250.1;Ontology_term=GO:0006829,GO:0055085,GO:0005385,GO:0016020;gbkey=CDS;gene=zitB;go_component=membrane|0016020||IEA;go_function=zinc ion transmembrane transporter activity|0005385||IEA;go_process=zinc ion transport|0006829||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459738.1;locus_tag=C9E96_RS08835;product=CDF family zinc transporter ZitB;protein_id=WP_000951250.1;transl_table=11
NZ_PYJX01000102.1	RefSeq	gene	3515	3901	.	-	.	ID=gene-C9E96_RS08840;Name=C9E96_RS08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08840;old_locus_tag=C9E96_09030
NZ_PYJX01000102.1	Protein Homology	CDS	3515	3901	.	-	0	ID=cds-WP_000784380.1;Parent=gene-C9E96_RS08840;Dbxref=GenBank:WP_000784380.1;Name=WP_000784380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459739.1;locus_tag=C9E96_RS08840;product=YbgS-like family protein;protein_id=WP_000784380.1;transl_table=11
NZ_PYJX01000102.1	RefSeq	gene	4221	5087	.	+	.	ID=gene-C9E96_RS08845;Name=aroG;end_range=5087,.;gbkey=Gene;gene=aroG;gene_biotype=protein_coding;locus_tag=C9E96_RS08845;old_locus_tag=C9E96_09035;partial=true
NZ_PYJX01000102.1	Protein Homology	CDS	4221	5087	.	+	0	ID=cds-WP_135494092.1;Parent=gene-C9E96_RS08845;Dbxref=GenBank:WP_135494092.1;Name=WP_135494092.1;end_range=5087,.;gbkey=CDS;gene=aroG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001109196.1;locus_tag=C9E96_RS08845;partial=true;product=3-deoxy-7-phosphoheptulonate synthase AroG;protein_id=WP_135494092.1;transl_table=11
##sequence-region NZ_PYJX01000243.1 1 5009
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000243.1	RefSeq	region	1	5009	.	+	.	ID=NZ_PYJX01000243.1:1..5009;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000243.1	RefSeq	gene	1	308	.	+	.	ID=gene-C9E96_RS22935;Name=C9E96_RS22935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22935;old_locus_tag=C9E96_23515;partial=true;start_range=.,1
NZ_PYJX01000243.1	Protein Homology	CDS	1	308	.	+	2	ID=cds-WP_280951955.1;Parent=gene-C9E96_RS22935;Dbxref=GenBank:WP_280951955.1;Name=WP_280951955.1;Ontology_term=GO:0016491,GO:0043546;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459603.1;locus_tag=C9E96_RS22935;partial=true;product=molybdopterin dinucleotide binding domain-containing protein;protein_id=WP_280951955.1;start_range=.,1;transl_table=11
NZ_PYJX01000243.1	RefSeq	gene	305	862	.	+	.	ID=gene-C9E96_RS22940;Name=C9E96_RS22940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22940;old_locus_tag=C9E96_23520
NZ_PYJX01000243.1	Protein Homology	CDS	305	862	.	+	0	ID=cds-WP_001250381.1;Parent=gene-C9E96_RS22940;Dbxref=GenBank:WP_001250381.1;Name=WP_001250381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459604.1;locus_tag=C9E96_RS22940;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_001250381.1;transl_table=11
NZ_PYJX01000243.1	RefSeq	gene	862	1629	.	+	.	ID=gene-C9E96_RS22945;Name=C9E96_RS22945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22945;old_locus_tag=C9E96_23525
NZ_PYJX01000243.1	Protein Homology	CDS	862	1629	.	+	0	ID=cds-WP_023993222.1;Parent=gene-C9E96_RS22945;Dbxref=GenBank:WP_023993222.1;Name=WP_023993222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459605.1;locus_tag=C9E96_RS22945;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_023993222.1;transl_table=11
NZ_PYJX01000243.1	RefSeq	gene	1697	2125	.	-	.	ID=gene-C9E96_RS22950;Name=uspG;gbkey=Gene;gene=uspG;gene_biotype=protein_coding;locus_tag=C9E96_RS22950;old_locus_tag=C9E96_23530
NZ_PYJX01000243.1	Protein Homology	CDS	1697	2125	.	-	0	ID=cds-WP_000278499.1;Parent=gene-C9E96_RS22950;Dbxref=GenBank:WP_000278499.1;Name=WP_000278499.1;gbkey=CDS;gene=uspG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459606.1;locus_tag=C9E96_RS22950;product=universal stress protein UspG;protein_id=WP_000278499.1;transl_table=11
NZ_PYJX01000243.1	RefSeq	gene	2348	3586	.	+	.	ID=gene-C9E96_RS22955;Name=C9E96_RS22955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22955;old_locus_tag=C9E96_23535
NZ_PYJX01000243.1	Protein Homology	CDS	2348	3586	.	+	0	ID=cds-WP_000646109.1;Parent=gene-C9E96_RS22955;Dbxref=GenBank:WP_000646109.1;Name=WP_000646109.1;Ontology_term=GO:0008270,GO:0016616,GO:0030554;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459607.1;locus_tag=C9E96_RS22955;product=zinc-dependent alcohol dehydrogenase;protein_id=WP_000646109.1;transl_table=11
NZ_PYJX01000243.1	RefSeq	gene	3669	4079	.	-	.	ID=gene-C9E96_RS22960;Name=rnk;gbkey=Gene;gene=rnk;gene_biotype=protein_coding;locus_tag=C9E96_RS22960;old_locus_tag=C9E96_23540
NZ_PYJX01000243.1	Protein Homology	CDS	3669	4079	.	-	0	ID=cds-WP_000089748.1;Parent=gene-C9E96_RS22960;Dbxref=GenBank:WP_000089748.1;Name=WP_000089748.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=rnk;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459608.1;locus_tag=C9E96_RS22960;product=nucleoside diphosphate kinase regulator;protein_id=WP_000089748.1;transl_table=11
NZ_PYJX01000243.1	RefSeq	gene	4314	5009	.	-	.	ID=gene-C9E96_RS22965;Name=rna;end_range=5009,.;gbkey=Gene;gene=rna;gene_biotype=protein_coding;locus_tag=C9E96_RS22965;old_locus_tag=C9E96_23550;partial=true
NZ_PYJX01000243.1	Protein Homology	CDS	4314	5009	.	-	0	ID=cds-WP_135494719.1;Parent=gene-C9E96_RS22965;Dbxref=GenBank:WP_135494719.1;Name=WP_135494719.1;end_range=5009,.;gbkey=CDS;gene=rna;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459609.1;locus_tag=C9E96_RS22965;partial=true;product=ribonuclease I;protein_id=WP_135494719.1;transl_table=11
##sequence-region NZ_PYJX01000077.1 1 4964
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000077.1	RefSeq	region	1	4964	.	+	.	ID=NZ_PYJX01000077.1:1..4964;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000077.1	RefSeq	gene	95	1756	.	-	.	ID=gene-C9E96_RS06515;Name=C9E96_RS06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06515;old_locus_tag=C9E96_06670
NZ_PYJX01000077.1	Protein Homology	CDS	95	1756	.	-	0	ID=cds-WP_001279793.1;Parent=gene-C9E96_RS06515;Dbxref=GenBank:WP_001279793.1;Name=WP_001279793.1;Ontology_term=GO:0006813,GO:0008324;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462707.1;locus_tag=C9E96_RS06515;product=putative transporter;protein_id=WP_001279793.1;transl_table=11
NZ_PYJX01000077.1	RefSeq	gene	1945	2373	.	-	.	ID=gene-C9E96_RS06520;Name=ibpB;gbkey=Gene;gene=ibpB;gene_biotype=protein_coding;locus_tag=C9E96_RS06520;old_locus_tag=C9E96_06675
NZ_PYJX01000077.1	Protein Homology	CDS	1945	2373	.	-	0	ID=cds-WP_001246919.1;Parent=gene-C9E96_RS06520;Dbxref=GenBank:WP_001246919.1;Name=WP_001246919.1;Ontology_term=GO:0006950,GO:0051082;gbkey=CDS;gene=ibpB;go_function=unfolded protein binding|0051082||IEA;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462708.3;locus_tag=C9E96_RS06520;product=small heat shock chaperone IbpB;protein_id=WP_001246919.1;transl_table=11
NZ_PYJX01000077.1	RefSeq	gene	2483	2896	.	-	.	ID=gene-C9E96_RS06525;Name=ibpA;gbkey=Gene;gene=ibpA;gene_biotype=protein_coding;locus_tag=C9E96_RS06525;old_locus_tag=C9E96_06680
NZ_PYJX01000077.1	Protein Homology	CDS	2483	2896	.	-	0	ID=cds-WP_001532742.1;Parent=gene-C9E96_RS06525;Dbxref=GenBank:WP_001532742.1;Name=WP_001532742.1;Ontology_term=GO:0006950,GO:0051082;gbkey=CDS;gene=ibpA;go_function=unfolded protein binding|0051082||IEA;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006687722.1;locus_tag=C9E96_RS06525;product=small heat shock chaperone IbpA;protein_id=WP_001532742.1;transl_table=11
NZ_PYJX01000077.1	cmsearch	sequence_feature	2890	2963	.	-	.	ID=id-NZ_PYJX01000077.1:2890..2963;Dbxref=RFAM:RF01832;Note=ROSE (Repression Of Heat Shock gene Expression) occurs in the 5'-region of heat shock genes and acts as an RNA thermometer to modulate expression.;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYJX01000077.1	RefSeq	gene	3206	3538	.	+	.	ID=gene-C9E96_RS06530;Name=C9E96_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06530;old_locus_tag=C9E96_06685
NZ_PYJX01000077.1	Protein Homology	CDS	3206	3538	.	+	0	ID=cds-WP_001581211.1;Parent=gene-C9E96_RS06530;Dbxref=GenBank:WP_001581211.1;Name=WP_001581211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675643.1;locus_tag=C9E96_RS06530;product=YceK/YidQ family lipoprotein;protein_id=WP_001581211.1;transl_table=11
NZ_PYJX01000077.1	RefSeq	gene	3540	4766	.	-	.	ID=gene-C9E96_RS06535;Name=C9E96_RS06535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06535;old_locus_tag=C9E96_06690
NZ_PYJX01000077.1	Protein Homology	CDS	3540	4766	.	-	0	ID=cds-WP_000809946.1;Parent=gene-C9E96_RS06535;Dbxref=GenBank:WP_000809946.1;Name=WP_000809946.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462711.1;locus_tag=C9E96_RS06535;product=DUF3748 domain-containing protein;protein_id=WP_000809946.1;transl_table=11
NZ_PYJX01000077.1	RefSeq	pseudogene	4888	4964	.	-	.	ID=gene-C9E96_RS24170;Name=C9E96_RS24170;end_range=4964,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24170;partial=true;pseudo=true
NZ_PYJX01000077.1	Protein Homology	CDS	4888	4964	.	-	2	ID=cds-C9E96_RS24170;Parent=gene-C9E96_RS24170;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=4964,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461190.1;locus_tag=C9E96_RS24170;partial=true;product=heme lyase subunit;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000066.1 1 4898
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000066.1	RefSeq	region	1	4898	.	+	.	ID=NZ_PYJX01000066.1:1..4898;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000066.1	RefSeq	gene	137	727	.	-	.	ID=gene-C9E96_RS05335;Name=yajL;gbkey=Gene;gene=yajL;gene_biotype=protein_coding;locus_tag=C9E96_RS05335;old_locus_tag=C9E96_05460
NZ_PYJX01000066.1	Protein Homology	CDS	137	727	.	-	0	ID=cds-WP_001275809.1;Parent=gene-C9E96_RS05335;Dbxref=GenBank:WP_001275809.1;Name=WP_001275809.1;gbkey=CDS;gene=yajL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459428.1;locus_tag=C9E96_RS05335;product=protein deglycase YajL;protein_id=WP_001275809.1;transl_table=11
NZ_PYJX01000066.1	RefSeq	gene	690	1601	.	-	.	ID=gene-C9E96_RS05340;Name=panE;gbkey=Gene;gene=panE;gene_biotype=protein_coding;locus_tag=C9E96_RS05340;old_locus_tag=C9E96_05465
NZ_PYJX01000066.1	Protein Homology	CDS	690	1601	.	-	0	ID=cds-WP_000705816.1;Parent=gene-C9E96_RS05340;Dbxref=GenBank:WP_000705816.1;Name=WP_000705816.1;Ontology_term=GO:0015940,GO:0008677;gbkey=CDS;gene=panE;go_function=2-dehydropantoate 2-reductase activity|0008677||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459429.1;locus_tag=C9E96_RS05340;product=2-dehydropantoate 2-reductase;protein_id=WP_000705816.1;transl_table=11
NZ_PYJX01000066.1	RefSeq	gene	1727	2218	.	+	.	ID=gene-C9E96_RS05345;Name=C9E96_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05345;old_locus_tag=C9E96_05470
NZ_PYJX01000066.1	Protein Homology	CDS	1727	2218	.	+	0	ID=cds-WP_001138913.1;Parent=gene-C9E96_RS05345;Dbxref=GenBank:WP_001138913.1;Name=WP_001138913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965590.1;locus_tag=C9E96_RS05345;product=YajQ family cyclic di-GMP-binding protein;protein_id=WP_001138913.1;transl_table=11
NZ_PYJX01000066.1	RefSeq	gene	2265	3629	.	-	.	ID=gene-C9E96_RS05350;Name=C9E96_RS05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05350;old_locus_tag=C9E96_05475
NZ_PYJX01000066.1	Protein Homology	CDS	2265	3629	.	-	0	ID=cds-WP_001000938.1;Parent=gene-C9E96_RS05350;Dbxref=GenBank:WP_001000938.1;Name=WP_001000938.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016507029.1;locus_tag=C9E96_RS05350;product=MFS transporter;protein_id=WP_001000938.1;transl_table=11
NZ_PYJX01000066.1	RefSeq	pseudogene	4154	4898	.	+	.	ID=gene-C9E96_RS05355;Name=C9E96_RS05355;end_range=4898,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05355;old_locus_tag=C9E96_05480;partial=true;pseudo=true
NZ_PYJX01000066.1	Protein Homology	CDS	4154	4898	.	+	0	ID=cds-C9E96_RS05355;Parent=gene-C9E96_RS05355;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=4898,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459433.1;locus_tag=C9E96_RS05355;partial=true;product=SEL1-like repeat protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000181.1 1 50530
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000181.1	RefSeq	region	1	50530	.	+	.	ID=NZ_PYJX01000181.1:1..50530;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000181.1	RefSeq	gene	1	603	.	+	.	ID=gene-C9E96_RS16950;Name=artJ;gbkey=Gene;gene=artJ;gene_biotype=protein_coding;locus_tag=C9E96_RS16950;old_locus_tag=C9E96_17380;partial=true;start_range=.,1
NZ_PYJX01000181.1	Protein Homology	CDS	1	603	.	+	0	ID=cds-WP_167852896.1;Parent=gene-C9E96_RS16950;Dbxref=GenBank:WP_167852896.1;Name=WP_167852896.1;gbkey=CDS;gene=artJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459863.1;locus_tag=C9E96_RS16950;partial=true;product=ABC transporter substrate-binding protein ArtJ;protein_id=WP_167852896.1;start_range=.,1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	822	2309	.	-	.	ID=gene-C9E96_RS16955;Name=C9E96_RS16955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16955;old_locus_tag=C9E96_17390
NZ_PYJX01000181.1	Protein Homology	CDS	822	2309	.	-	0	ID=cds-WP_000644018.1;Parent=gene-C9E96_RS16955;Dbxref=GenBank:WP_000644018.1;Name=WP_000644018.1;Ontology_term=GO:0008484,GO:0046872;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459862.1;locus_tag=C9E96_RS16955;product=sulfatase;protein_id=WP_000644018.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	2319	2639	.	-	.	ID=gene-C9E96_RS16960;Name=C9E96_RS16960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16960;old_locus_tag=C9E96_17395
NZ_PYJX01000181.1	Protein Homology	CDS	2319	2639	.	-	0	ID=cds-WP_000655399.1;Parent=gene-C9E96_RS16960;Dbxref=GenBank:WP_000655399.1;Name=WP_000655399.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459861.1;locus_tag=C9E96_RS16960;product=PTS sugar transporter subunit IIB;protein_id=WP_000655399.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	2669	4012	.	-	.	ID=gene-C9E96_RS16965;Name=C9E96_RS16965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16965;old_locus_tag=C9E96_17400
NZ_PYJX01000181.1	Protein Homology	CDS	2669	4012	.	-	0	ID=cds-WP_000399323.1;Parent=gene-C9E96_RS16965;Dbxref=GenBank:WP_000399323.1;Name=WP_000399323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459860.1;locus_tag=C9E96_RS16965;product=PTS sugar transporter subunit IIC;protein_id=WP_000399323.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	4307	5434	.	-	.	ID=gene-C9E96_RS16970;Name=rlmC;gbkey=Gene;gene=rlmC;gene_biotype=protein_coding;locus_tag=C9E96_RS16970;old_locus_tag=C9E96_17405
NZ_PYJX01000181.1	Protein Homology	CDS	4307	5434	.	-	0	ID=cds-WP_001623325.1;Parent=gene-C9E96_RS16970;Dbxref=GenBank:WP_001623325.1;Name=WP_001623325.1;Ontology_term=GO:0016070,GO:0008649;gbkey=CDS;gene=rlmC;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001149796.1;locus_tag=C9E96_RS16970;product=23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;protein_id=WP_001623325.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	5477	5950	.	-	.	ID=gene-C9E96_RS16975;Name=C9E96_RS16975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16975;old_locus_tag=C9E96_17410
NZ_PYJX01000181.1	Protein Homology	CDS	5477	5950	.	-	0	ID=cds-WP_000505788.1;Parent=gene-C9E96_RS16975;Dbxref=GenBank:WP_000505788.1;Name=WP_000505788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459858.1;locus_tag=C9E96_RS16975;product=YbjO family protein;protein_id=WP_000505788.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	6024	6869	.	-	.	ID=gene-C9E96_RS16980;Name=potI;gbkey=Gene;gene=potI;gene_biotype=protein_coding;locus_tag=C9E96_RS16980;old_locus_tag=C9E96_17415
NZ_PYJX01000181.1	Protein Homology	CDS	6024	6869	.	-	0	ID=cds-WP_001061629.1;Parent=gene-C9E96_RS16980;Dbxref=GenBank:WP_001061629.1;Name=WP_001061629.1;Ontology_term=GO:0055085;gbkey=CDS;gene=potI;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459857.1;locus_tag=C9E96_RS16980;product=putrescine ABC transporter permease PotI;protein_id=WP_001061629.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	6866	7819	.	-	.	ID=gene-C9E96_RS16985;Name=potH;gbkey=Gene;gene=potH;gene_biotype=protein_coding;locus_tag=C9E96_RS16985;old_locus_tag=C9E96_17420
NZ_PYJX01000181.1	Protein Homology	CDS	6866	7819	.	-	0	ID=cds-WP_000105453.1;Parent=gene-C9E96_RS16985;Dbxref=GenBank:WP_000105453.1;Name=WP_000105453.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=potH;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459856.1;locus_tag=C9E96_RS16985;product=putrescine ABC transporter permease PotH;protein_id=WP_000105453.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	7829	8962	.	-	.	ID=gene-C9E96_RS16990;Name=potG;gbkey=Gene;gene=potG;gene_biotype=protein_coding;locus_tag=C9E96_RS16990;old_locus_tag=C9E96_17425
NZ_PYJX01000181.1	Protein Homology	CDS	7829	8962	.	-	0	ID=cds-WP_001000698.1;Parent=gene-C9E96_RS16990;Dbxref=GenBank:WP_001000698.1;Name=WP_001000698.1;Ontology_term=GO:0015846,GO:0055085,GO:0005524,GO:0015417,GO:0022857,GO:0043190;gbkey=CDS;gene=potG;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type polyamine transporter activity|0015417||IEA,transmembrane transporter activity|0022857||IEA;go_process=polyamine transport|0015846||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000996010.1;locus_tag=C9E96_RS16990;product=putrescine ABC transporter ATP-binding subunit PotG;protein_id=WP_001000698.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	9050	10162	.	-	.	ID=gene-C9E96_RS16995;Name=potF;gbkey=Gene;gene=potF;gene_biotype=protein_coding;locus_tag=C9E96_RS16995;old_locus_tag=C9E96_17430
NZ_PYJX01000181.1	Protein Homology	CDS	9050	10162	.	-	0	ID=cds-WP_000125769.1;Parent=gene-C9E96_RS16995;Dbxref=GenBank:WP_000125769.1;Name=WP_000125769.1;Ontology_term=GO:0015846,GO:0019808,GO:0042597;gbkey=CDS;gene=potF;go_component=periplasmic space|0042597||IEA;go_function=polyamine binding|0019808||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459854.1;locus_tag=C9E96_RS16995;product=spermidine/putrescine ABC transporter substrate-binding protein PotF;protein_id=WP_000125769.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	10511	10987	.	-	.	ID=gene-C9E96_RS17000;Name=C9E96_RS17000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17000;old_locus_tag=C9E96_17435
NZ_PYJX01000181.1	Protein Homology	CDS	10511	10987	.	-	0	ID=cds-WP_000624811.1;Parent=gene-C9E96_RS17000;Dbxref=GenBank:WP_000624811.1;Name=WP_000624811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459853.1;locus_tag=C9E96_RS17000;product=YbjN domain-containing protein;protein_id=WP_000624811.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	11084	11986	.	-	.	ID=gene-C9E96_RS17005;Name=rimK;gbkey=Gene;gene=rimK;gene_biotype=protein_coding;locus_tag=C9E96_RS17005;old_locus_tag=C9E96_17440
NZ_PYJX01000181.1	Protein Homology	CDS	11084	11986	.	-	0	ID=cds-WP_000684361.1;Parent=gene-C9E96_RS17005;Dbxref=GenBank:WP_000684361.1;Name=WP_000684361.1;Ontology_term=GO:0036211,GO:0005524,GO:0046872;gbkey=CDS;gene=rimK;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459852.1;locus_tag=C9E96_RS17005;product=30S ribosomal protein S6--L-glutamate ligase;protein_id=WP_000684361.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	12044	12766	.	-	.	ID=gene-C9E96_RS17010;Name=nfsA;gbkey=Gene;gene=nfsA;gene_biotype=protein_coding;locus_tag=C9E96_RS17010;old_locus_tag=C9E96_17445
NZ_PYJX01000181.1	Protein Homology	CDS	12044	12766	.	-	0	ID=cds-WP_000075300.1;Parent=gene-C9E96_RS17010;Dbxref=GenBank:WP_000075300.1;Name=WP_000075300.1;gbkey=CDS;gene=nfsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459851.1;locus_tag=C9E96_RS17010;product=nitroreductase NfsA;protein_id=WP_000075300.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	12750	13040	.	-	.	ID=gene-C9E96_RS17015;Name=C9E96_RS17015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17015;old_locus_tag=C9E96_17450
NZ_PYJX01000181.1	Protein Homology	CDS	12750	13040	.	-	0	ID=cds-WP_039591269.1;Parent=gene-C9E96_RS17015;Dbxref=GenBank:WP_039591269.1;Name=WP_039591269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459850.1;locus_tag=C9E96_RS17015;product=YbjC family protein;protein_id=WP_039591269.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	13210	13473	.	+	.	ID=gene-C9E96_RS17020;Name=C9E96_RS17020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17020;old_locus_tag=C9E96_17455
NZ_PYJX01000181.1	Protein Homology	CDS	13210	13473	.	+	0	ID=cds-WP_000495513.1;Parent=gene-C9E96_RS17020;Dbxref=GenBank:WP_000495513.1;Name=WP_000495513.1;Ontology_term=GO:0045454,GO:0009055,GO:0015035;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,protein-disulfide reductase activity|0015035||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459849.1;locus_tag=C9E96_RS17020;product=GrxA family glutaredoxin;protein_id=WP_000495513.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	13505	13882	.	-	.	ID=gene-C9E96_RS17025;Name=C9E96_RS17025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17025;old_locus_tag=C9E96_17460
NZ_PYJX01000181.1	Protein Homology	CDS	13505	13882	.	-	0	ID=cds-WP_000680850.1;Parent=gene-C9E96_RS17025;Dbxref=GenBank:WP_000680850.1;Name=WP_000680850.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459848.1;locus_tag=C9E96_RS17025;product=inner membrane protein YbjM;protein_id=WP_000680850.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	14153	15838	.	+	.	ID=gene-C9E96_RS17030;Name=C9E96_RS17030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17030;old_locus_tag=C9E96_17470
NZ_PYJX01000181.1	Protein Homology	CDS	14153	15838	.	+	0	ID=cds-WP_001024853.1;Parent=gene-C9E96_RS17030;Dbxref=GenBank:WP_001024853.1;Name=WP_001024853.1;Ontology_term=GO:0006813,GO:0008324;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001024888.1;locus_tag=C9E96_RS17030;product=aspartate:alanine antiporter;protein_id=WP_001024853.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	15955	16575	.	-	.	ID=gene-C9E96_RS17040;Name=C9E96_RS17040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17040;old_locus_tag=C9E96_17480
NZ_PYJX01000181.1	Protein Homology	CDS	15955	16575	.	-	0	ID=cds-WP_000661873.1;Parent=gene-C9E96_RS17040;Dbxref=GenBank:WP_000661873.1;Name=WP_000661873.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459846.1;locus_tag=C9E96_RS17040;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000661873.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	16743	17954	.	+	.	ID=gene-C9E96_RS17045;Name=C9E96_RS17045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17045;old_locus_tag=C9E96_17485
NZ_PYJX01000181.1	Protein Homology	CDS	16743	17954	.	+	0	ID=cds-WP_000217420.1;Parent=gene-C9E96_RS17045;Dbxref=GenBank:WP_000217420.1;Name=WP_000217420.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459845.1;locus_tag=C9E96_RS17045;product=MFS transporter;protein_id=WP_000217420.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	17951	18766	.	+	.	ID=gene-C9E96_RS17050;Name=C9E96_RS17050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17050;old_locus_tag=C9E96_17490
NZ_PYJX01000181.1	Protein Homology	CDS	17951	18766	.	+	0	ID=cds-WP_079986832.1;Parent=gene-C9E96_RS17050;Dbxref=GenBank:WP_079986832.1;Name=WP_079986832.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459844.1;locus_tag=C9E96_RS17050;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_079986832.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	18820	20052	.	-	.	ID=gene-C9E96_RS17055;Name=C9E96_RS17055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17055;old_locus_tag=C9E96_17495
NZ_PYJX01000181.1	Protein Homology	CDS	18820	20052	.	-	0	ID=cds-WP_001181284.1;Parent=gene-C9E96_RS17055;Dbxref=GenBank:WP_001181284.1;Name=WP_001181284.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459843.1;locus_tag=C9E96_RS17055;product=MFS transporter;protein_id=WP_001181284.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	20365	20973	.	+	.	ID=gene-C9E96_RS17060;Name=ybjG;gbkey=Gene;gene=ybjG;gene_biotype=protein_coding;locus_tag=C9E96_RS17060;old_locus_tag=C9E96_17500
NZ_PYJX01000181.1	Protein Homology	CDS	20365	20973	.	+	0	ID=cds-WP_135494437.1;Parent=gene-C9E96_RS17060;Dbxref=GenBank:WP_135494437.1;Name=WP_135494437.1;Ontology_term=GO:0050380,GO:0005886;gbkey=CDS;gene=ybjG;go_component=plasma membrane|0005886||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459842.1;locus_tag=C9E96_RS17060;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_135494437.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	21045	21803	.	+	.	ID=gene-C9E96_RS17065;Name=deoR;gbkey=Gene;gene=deoR;gene_biotype=protein_coding;locus_tag=C9E96_RS17065;old_locus_tag=C9E96_17505
NZ_PYJX01000181.1	Protein Homology	CDS	21045	21803	.	+	0	ID=cds-WP_000450104.1;Parent=gene-C9E96_RS17065;Dbxref=GenBank:WP_000450104.1;Name=WP_000450104.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=deoR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459841.1;locus_tag=C9E96_RS17065;product=DNA-binding transcriptional repressor DeoR;protein_id=WP_000450104.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	21848	23050	.	-	.	ID=gene-C9E96_RS17070;Name=dacC;gbkey=Gene;gene=dacC;gene_biotype=protein_coding;locus_tag=C9E96_RS17070;old_locus_tag=C9E96_17510
NZ_PYJX01000181.1	Protein Homology	CDS	21848	23050	.	-	0	ID=cds-WP_000195712.1;Parent=gene-C9E96_RS17070;Dbxref=GenBank:WP_000195712.1;Name=WP_000195712.1;gbkey=CDS;gene=dacC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459840.1;locus_tag=C9E96_RS17070;product=serine-type D-Ala-D-Ala carboxypeptidase;protein_id=WP_000195712.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	23294	23920	.	+	.	ID=gene-C9E96_RS17075;Name=C9E96_RS17075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17075;old_locus_tag=C9E96_17515
NZ_PYJX01000181.1	Protein Homology	CDS	23294	23920	.	+	0	ID=cds-WP_000631907.1;Parent=gene-C9E96_RS17075;Dbxref=GenBank:WP_000631907.1;Name=WP_000631907.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459839.1;locus_tag=C9E96_RS17075;product=glutathione S-transferase family protein;protein_id=WP_000631907.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	23917	24444	.	-	.	ID=gene-C9E96_RS17080;Name=C9E96_RS17080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17080;old_locus_tag=C9E96_17520
NZ_PYJX01000181.1	Protein Homology	CDS	23917	24444	.	-	0	ID=cds-WP_371063368.1;Parent=gene-C9E96_RS17080;Dbxref=GenBank:WP_371063368.1;Name=WP_371063368.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001252732.1;locus_tag=C9E96_RS17080;product=PQQ-dependent sugar dehydrogenase;protein_id=WP_371063368.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	pseudogene	24505	24600	.	-	.	ID=gene-C9E96_RS24555;Name=C9E96_RS24555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24555;partial=true;pseudo=true;start_range=.,24505
NZ_PYJX01000181.1	Protein Homology	CDS	24505	24600	.	-	0	ID=cds-C9E96_RS24555;Parent=gene-C9E96_RS24555;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313;gbkey=CDS;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF015750.6;locus_tag=C9E96_RS24555;partial=true;product=IS1 family transposase;pseudo=true;start_range=.,24505;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	24944	25369	.	+	.	ID=gene-C9E96_RS17085;Name=C9E96_RS17085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17085;old_locus_tag=C9E96_17525
NZ_PYJX01000181.1	Protein Homology	CDS	24944	25369	.	+	0	ID=cds-WP_000287110.1;Parent=gene-C9E96_RS17085;Dbxref=GenBank:WP_000287110.1;Name=WP_000287110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459837.1;locus_tag=C9E96_RS17085;product=GntP family permease;protein_id=WP_000287110.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	25634	26524	.	+	.	ID=gene-C9E96_RS17090;Name=C9E96_RS17090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17090;old_locus_tag=C9E96_17530
NZ_PYJX01000181.1	Protein Homology	CDS	25634	26524	.	+	0	ID=cds-WP_000545335.1;Parent=gene-C9E96_RS17090;Dbxref=GenBank:WP_000545335.1;Name=WP_000545335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459836.1;locus_tag=C9E96_RS17090;product=LysR family transcriptional regulator;protein_id=WP_000545335.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	26530	28215	.	-	.	ID=gene-C9E96_RS17095;Name=C9E96_RS17095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17095;old_locus_tag=C9E96_17535
NZ_PYJX01000181.1	Protein Homology	CDS	26530	28215	.	-	0	ID=cds-WP_001000306.1;Parent=gene-C9E96_RS17095;Dbxref=GenBank:WP_001000306.1;Name=WP_001000306.1;Ontology_term=GO:0022900,GO:0004174,GO:0046872,GO:0051539;gbkey=CDS;go_function=electron-transferring-flavoprotein dehydrogenase activity|0004174||IEA,metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459835.1;locus_tag=C9E96_RS17095;product=electron transfer flavoprotein-ubiquinone oxidoreductase;protein_id=WP_001000306.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	28664	29827	.	-	.	ID=gene-C9E96_RS17105;Name=C9E96_RS17105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17105;old_locus_tag=C9E96_17545
NZ_PYJX01000181.1	Protein Homology	CDS	28664	29827	.	-	0	ID=cds-WP_000835399.1;Parent=gene-C9E96_RS17105;Dbxref=GenBank:WP_000835399.1;Name=WP_000835399.1;Ontology_term=GO:0003995,GO:0050660;gbkey=CDS;go_function=acyl-CoA dehydrogenase activity|0003995||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459834.1;locus_tag=C9E96_RS17105;product=acyl-CoA dehydrogenase family protein;protein_id=WP_000835399.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	29891	30088	.	-	.	ID=gene-C9E96_RS23980;Name=C9E96_RS23980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23980;old_locus_tag=C9E96_17550
NZ_PYJX01000181.1	GeneMarkS-2+	CDS	29891	30088	.	-	0	ID=cds-WP_001200424.1;Parent=gene-C9E96_RS23980;Dbxref=GenBank:WP_001200424.1;Name=WP_001200424.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS23980;product=hypothetical protein;protein_id=WP_001200424.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	30121	31068	.	-	.	ID=gene-C9E96_RS17115;Name=C9E96_RS17115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17115;old_locus_tag=C9E96_17555
NZ_PYJX01000181.1	Protein Homology	CDS	30121	31068	.	-	0	ID=cds-WP_000157776.1;Parent=gene-C9E96_RS17115;Dbxref=GenBank:WP_000157776.1;Name=WP_000157776.1;Ontology_term=GO:0009055,GO:0050660;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459833.1;locus_tag=C9E96_RS17115;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=WP_000157776.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	31079	31828	.	-	.	ID=gene-C9E96_RS17120;Name=C9E96_RS17120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17120;old_locus_tag=C9E96_17560
NZ_PYJX01000181.1	Protein Homology	CDS	31079	31828	.	-	0	ID=cds-WP_001521753.1;Parent=gene-C9E96_RS17120;Dbxref=GenBank:WP_001521753.1;Name=WP_001521753.1;Ontology_term=GO:0009055;gbkey=CDS;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002949615.1;locus_tag=C9E96_RS17120;product=electron transfer flavoprotein subunit beta/FixA family protein;protein_id=WP_001521753.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	31851	32366	.	-	.	ID=gene-C9E96_RS17125;Name=C9E96_RS17125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17125;old_locus_tag=C9E96_17565
NZ_PYJX01000181.1	Protein Homology	CDS	31851	32366	.	-	0	ID=cds-WP_001521476.1;Parent=gene-C9E96_RS17125;Dbxref=GenBank:WP_001521476.1;Name=WP_001521476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459831.1;locus_tag=C9E96_RS17125;product=STM0854 family CoA ester lyase;protein_id=WP_001521476.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	pseudogene	32692	32977	.	-	.	ID=gene-C9E96_RS24280;Name=C9E96_RS24280;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24280;old_locus_tag=C9E96_17570;partial=true;pseudo=true;start_range=.,32692
NZ_PYJX01000181.1	Protein Homology	CDS	32692	32977	.	-	0	ID=cds-C9E96_RS24280;Parent=gene-C9E96_RS24280;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_046881606.1;locus_tag=C9E96_RS24280;partial=true;product=IS4-like element ISEc60 family transposase;pseudo=true;start_range=.,32692;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	33080	33463	.	-	.	ID=gene-C9E96_RS17130;Name=bssR;gbkey=Gene;gene=bssR;gene_biotype=protein_coding;locus_tag=C9E96_RS17130;old_locus_tag=C9E96_17575
NZ_PYJX01000181.1	Protein Homology	CDS	33080	33463	.	-	0	ID=cds-WP_000259648.1;Parent=gene-C9E96_RS17130;Dbxref=GenBank:WP_000259648.1;Name=WP_000259648.1;gbkey=CDS;gene=bssR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459830.1;locus_tag=C9E96_RS17130;product=biofilm formation regulator BssR;protein_id=WP_000259648.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	33694	35019	.	+	.	ID=gene-C9E96_RS17135;Name=rimO;gbkey=Gene;gene=rimO;gene_biotype=protein_coding;locus_tag=C9E96_RS17135;old_locus_tag=C9E96_17580
NZ_PYJX01000181.1	Protein Homology	CDS	33694	35019	.	+	0	ID=cds-WP_000073314.1;Parent=gene-C9E96_RS17135;Dbxref=GenBank:WP_000073314.1;Name=WP_000073314.1;Ontology_term=GO:0018339,GO:0008172,GO:0016740,GO:0016782,GO:0051539,GO:1904047,GO:0005737;gbkey=CDS;gene=rimO;go_component=cytoplasm|0005737||IEA;go_function=S-methyltransferase activity|0008172||IEA,transferase activity|0016740||IEA,transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid|0018339||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459829.1;locus_tag=C9E96_RS17135;product=30S ribosomal protein S12 methylthiotransferase RimO;protein_id=WP_000073314.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	35110	36021	.	-	.	ID=gene-C9E96_RS17140;Name=gsiD;gbkey=Gene;gene=gsiD;gene_biotype=protein_coding;locus_tag=C9E96_RS17140;old_locus_tag=C9E96_17585
NZ_PYJX01000181.1	Protein Homology	CDS	35110	36021	.	-	0	ID=cds-WP_001236024.1;Parent=gene-C9E96_RS17140;Dbxref=GenBank:WP_001236024.1;Name=WP_001236024.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=gsiD;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459828.1;locus_tag=C9E96_RS17140;product=glutathione ABC transporter permease GsiD;protein_id=WP_001236024.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	36024	36944	.	-	.	ID=gene-C9E96_RS17145;Name=gsiC;gbkey=Gene;gene=gsiC;gene_biotype=protein_coding;locus_tag=C9E96_RS17145;old_locus_tag=C9E96_17590
NZ_PYJX01000181.1	Protein Homology	CDS	36024	36944	.	-	0	ID=cds-WP_000936066.1;Parent=gene-C9E96_RS17145;Dbxref=GenBank:WP_000936066.1;Name=WP_000936066.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=gsiC;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459827.1;locus_tag=C9E96_RS17145;product=glutathione ABC transporter permease GsiC;protein_id=WP_000936066.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	37005	38543	.	-	.	ID=gene-C9E96_RS17150;Name=gsiB;gbkey=Gene;gene=gsiB;gene_biotype=protein_coding;locus_tag=C9E96_RS17150;old_locus_tag=C9E96_17595
NZ_PYJX01000181.1	Protein Homology	CDS	37005	38543	.	-	0	ID=cds-WP_023993611.1;Parent=gene-C9E96_RS17150;Dbxref=GenBank:WP_023993611.1;Name=WP_023993611.1;Ontology_term=GO:0034775,GO:0034634,GO:0043190;gbkey=CDS;gene=gsiB;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=glutathione transmembrane transporter activity|0034634||IEA;go_process=glutathione transmembrane transport|0034775||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459826.1;locus_tag=C9E96_RS17150;product=glutathione ABC transporter substrate-binding protein GsiB;protein_id=WP_023993611.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	38576	40447	.	-	.	ID=gene-C9E96_RS17155;Name=gsiA;gbkey=Gene;gene=gsiA;gene_biotype=protein_coding;locus_tag=C9E96_RS17155;old_locus_tag=C9E96_17600
NZ_PYJX01000181.1	Protein Homology	CDS	38576	40447	.	-	0	ID=cds-WP_001120598.1;Parent=gene-C9E96_RS17155;Dbxref=GenBank:WP_001120598.1;Name=WP_001120598.1;Ontology_term=GO:0006810,GO:0000166,GO:0005524;gbkey=CDS;gene=gsiA;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459825.1;locus_tag=C9E96_RS17155;product=glutathione ABC transporter ATP-binding protein GsiA;protein_id=WP_001120598.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	40458	41399	.	-	.	ID=gene-C9E96_RS17160;Name=iaaA;gbkey=Gene;gene=iaaA;gene_biotype=protein_coding;locus_tag=C9E96_RS17160;old_locus_tag=C9E96_17605
NZ_PYJX01000181.1	Protein Homology	CDS	40458	41399	.	-	0	ID=cds-WP_135494431.1;Parent=gene-C9E96_RS17160;Dbxref=GenBank:WP_135494431.1;Name=WP_135494431.1;gbkey=CDS;gene=iaaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459824.1;locus_tag=C9E96_RS17160;product=beta-aspartyl-peptidase;protein_id=WP_135494431.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	41602	42837	.	+	.	ID=gene-C9E96_RS17165;Name=moeA;gbkey=Gene;gene=moeA;gene_biotype=protein_coding;locus_tag=C9E96_RS17165;old_locus_tag=C9E96_17610
NZ_PYJX01000181.1	Protein Homology	CDS	41602	42837	.	+	0	ID=cds-WP_167852897.1;Parent=gene-C9E96_RS17165;Dbxref=GenBank:WP_167852897.1;Name=WP_167852897.1;Ontology_term=GO:0006777,GO:0032324;gbkey=CDS;gene=moeA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA,molybdopterin cofactor biosynthetic process|0032324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308932.1;locus_tag=C9E96_RS17165;product=molybdopterin molybdotransferase MoeA;protein_id=WP_167852897.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	42837	43586	.	+	.	ID=gene-C9E96_RS17170;Name=moeB;gbkey=Gene;gene=moeB;gene_biotype=protein_coding;locus_tag=C9E96_RS17170;old_locus_tag=C9E96_17615
NZ_PYJX01000181.1	Protein Homology	CDS	42837	43586	.	+	0	ID=cds-WP_000829278.1;Parent=gene-C9E96_RS17170;Dbxref=GenBank:WP_000829278.1;Name=WP_000829278.1;Ontology_term=GO:0006777,GO:0008641;gbkey=CDS;gene=moeB;go_function=ubiquitin-like modifier activating enzyme activity|0008641||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459822.1;locus_tag=C9E96_RS17170;product=molybdopterin-synthase adenylyltransferase MoeB;protein_id=WP_000829278.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	43864	44763	.	+	.	ID=gene-C9E96_RS17175;Name=C9E96_RS17175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17175;old_locus_tag=C9E96_17620
NZ_PYJX01000181.1	Protein Homology	CDS	43864	44763	.	+	0	ID=cds-WP_000576947.1;Parent=gene-C9E96_RS17175;Dbxref=GenBank:WP_000576947.1;Name=WP_000576947.1;Ontology_term=GO:0043687,GO:0051539,GO:1904047;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=post-translational protein modification|0043687||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459821.1;locus_tag=C9E96_RS17175;product=glycyl-radical enzyme activating protein;protein_id=WP_000576947.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	44769	47201	.	+	.	ID=gene-C9E96_RS17180;Name=C9E96_RS17180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17180;old_locus_tag=C9E96_17625
NZ_PYJX01000181.1	Protein Homology	CDS	44769	47201	.	+	0	ID=cds-WP_023993608.1;Parent=gene-C9E96_RS17180;Dbxref=GenBank:WP_023993608.1;Name=WP_023993608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459820.1;locus_tag=C9E96_RS17180;product=glycyl radical protein;protein_id=WP_023993608.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	47279	48088	.	-	.	ID=gene-C9E96_RS17185;Name=C9E96_RS17185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17185;old_locus_tag=C9E96_17630
NZ_PYJX01000181.1	Protein Homology	CDS	47279	48088	.	-	0	ID=cds-WP_000217910.1;Parent=gene-C9E96_RS17185;Dbxref=GenBank:WP_000217910.1;Name=WP_000217910.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459819.1;locus_tag=C9E96_RS17185;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_000217910.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	48350	49615	.	+	.	ID=gene-C9E96_RS17190;Name=C9E96_RS17190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17190;old_locus_tag=C9E96_17635
NZ_PYJX01000181.1	Protein Homology	CDS	48350	49615	.	+	0	ID=cds-WP_080203867.1;Parent=gene-C9E96_RS17190;Dbxref=GenBank:WP_080203867.1;Name=WP_080203867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459818.1;locus_tag=C9E96_RS17190;product=DUF1479 domain-containing protein;protein_id=WP_080203867.1;transl_table=11
NZ_PYJX01000181.1	RefSeq	gene	49737	50530	.	-	.	ID=gene-C9E96_RS17195;Name=C9E96_RS17195;end_range=50530,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17195;old_locus_tag=C9E96_17645;partial=true
NZ_PYJX01000181.1	Protein Homology	CDS	49737	50530	.	-	2	ID=cds-WP_135494435.1;Parent=gene-C9E96_RS17195;Dbxref=GenBank:WP_135494435.1;Name=WP_135494435.1;Ontology_term=GO:0005524;end_range=50530,.;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000961428.1;locus_tag=C9E96_RS17195;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_135494435.1;transl_table=11
##sequence-region NZ_PYJX01000228.1 1 4850
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000228.1	RefSeq	region	1	4850	.	+	.	ID=NZ_PYJX01000228.1:1..4850;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000228.1	RefSeq	gene	168	283	.	+	.	ID=gene-C9E96_RS22110;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9E96_RS22110;old_locus_tag=C9E96_22655
NZ_PYJX01000228.1	cmsearch	rRNA	168	283	.	+	.	ID=rna-C9E96_RS22110;Parent=gene-C9E96_RS22110;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS22110;product=5S ribosomal RNA
NZ_PYJX01000228.1	cmsearch	exon	168	283	.	+	.	ID=exon-C9E96_RS22110-1;Parent=rna-C9E96_RS22110;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS22110;product=5S ribosomal RNA
NZ_PYJX01000228.1	RefSeq	gene	492	947	.	+	.	ID=gene-C9E96_RS22115;Name=C9E96_RS22115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22115;old_locus_tag=C9E96_22660
NZ_PYJX01000228.1	Protein Homology	CDS	492	947	.	+	0	ID=cds-WP_000985653.1;Parent=gene-C9E96_RS22115;Dbxref=GenBank:WP_000985653.1;Name=WP_000985653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461590.1;locus_tag=C9E96_RS22115;product=DUF4385 domain-containing protein;protein_id=WP_000985653.1;transl_table=11
NZ_PYJX01000228.1	RefSeq	gene	1051	2352	.	+	.	ID=gene-C9E96_RS22120;Name=C9E96_RS22120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22120;old_locus_tag=C9E96_22665
NZ_PYJX01000228.1	Protein Homology	CDS	1051	2352	.	+	0	ID=cds-WP_000807818.1;Parent=gene-C9E96_RS22120;Dbxref=GenBank:WP_000807818.1;Name=WP_000807818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461589.1;locus_tag=C9E96_RS22120;product=MFS transporter;protein_id=WP_000807818.1;transl_table=11
NZ_PYJX01000228.1	RefSeq	gene	2349	2672	.	-	.	ID=gene-C9E96_RS22125;Name=C9E96_RS22125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22125;old_locus_tag=C9E96_22670
NZ_PYJX01000228.1	Protein Homology	CDS	2349	2672	.	-	0	ID=cds-WP_001264473.1;Parent=gene-C9E96_RS22125;Dbxref=GenBank:WP_001264473.1;Name=WP_001264473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461588.1;locus_tag=C9E96_RS22125;product=YfiM family lipoprotein;protein_id=WP_001264473.1;transl_table=11
NZ_PYJX01000228.1	RefSeq	gene	2717	4072	.	-	.	ID=gene-C9E96_RS22130;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=C9E96_RS22130;old_locus_tag=C9E96_22675
NZ_PYJX01000228.1	Protein Homology	CDS	2717	4072	.	-	0	ID=cds-WP_000949286.1;Parent=gene-C9E96_RS22130;Dbxref=GenBank:WP_000949286.1;Name=WP_000949286.1;Ontology_term=GO:0032049,GO:0008444;gbkey=CDS;gene=pssA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121216.1;locus_tag=C9E96_RS22130;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_000949286.1;transl_table=11
NZ_PYJX01000228.1	RefSeq	gene	4187	4850	.	-	.	ID=gene-C9E96_RS22135;Name=C9E96_RS22135;end_range=4850,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22135;old_locus_tag=C9E96_22680;partial=true
NZ_PYJX01000228.1	Protein Homology	CDS	4187	4850	.	-	1	ID=cds-WP_245306442.1;Parent=gene-C9E96_RS22135;Dbxref=GenBank:WP_245306442.1;Name=WP_245306442.1;Ontology_term=GO:0008080,GO:0016746;end_range=4850,.;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417079.1;locus_tag=C9E96_RS22135;partial=true;product=GNAT family N-acetyltransferase;protein_id=WP_245306442.1;transl_table=11
##sequence-region NZ_PYJX01000094.1 1 4536
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000094.1	RefSeq	region	1	4536	.	+	.	ID=NZ_PYJX01000094.1:1..4536;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000094.1	RefSeq	gene	88	1674	.	+	.	ID=gene-C9E96_RS08315;Name=C9E96_RS08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08315;old_locus_tag=C9E96_08505
NZ_PYJX01000094.1	Protein Homology	CDS	88	1674	.	+	0	ID=cds-WP_023993903.1;Parent=gene-C9E96_RS08315;Dbxref=GenBank:WP_023993903.1;Name=WP_023993903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000969800.1;locus_tag=C9E96_RS08315;product=hypothetical protein;protein_id=WP_023993903.1;transl_table=11
NZ_PYJX01000094.1	RefSeq	pseudogene	1762	2958	.	+	.	ID=gene-C9E96_RS08320;Name=C9E96_RS08320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS08320;old_locus_tag=C9E96_08510;pseudo=true
NZ_PYJX01000094.1	Protein Homology	CDS	1762	2958	.	+	0	ID=cds-C9E96_RS08320;Parent=gene-C9E96_RS08320;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=C9E96_RS08320;product=IS256 family transposase;pseudo=true;transl_table=11
NZ_PYJX01000094.1	RefSeq	gene	3002	4456	.	-	.	ID=gene-C9E96_RS08330;Name=C9E96_RS08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08330;old_locus_tag=C9E96_08520
NZ_PYJX01000094.1	Protein Homology	CDS	3002	4456	.	-	0	ID=cds-WP_001537448.1;Parent=gene-C9E96_RS08330;Dbxref=GenBank:WP_001537448.1;Name=WP_001537448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001537448.1;locus_tag=C9E96_RS08330;product=hypothetical protein;protein_id=WP_001537448.1;transl_table=11
NZ_PYJX01000094.1	RefSeq	gene	4446	4536	.	-	.	ID=gene-C9E96_RS24505;Name=C9E96_RS24505;end_range=4536,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24505;old_locus_tag=C9E96_08525;partial=true
NZ_PYJX01000094.1	Protein Homology	CDS	4446	4536	.	-	1	ID=cds-WP_254793002.1;Parent=gene-C9E96_RS24505;Dbxref=GenBank:WP_254793002.1;Name=WP_254793002.1;end_range=4536,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001539222.1;locus_tag=C9E96_RS24505;partial=true;product=hypothetical protein;protein_id=WP_254793002.1;transl_table=11
##sequence-region NZ_PYJX01000046.1 1 4418
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000046.1	RefSeq	region	1	4418	.	+	.	ID=NZ_PYJX01000046.1:1..4418;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000046.1	RefSeq	gene	252	1280	.	+	.	ID=gene-C9E96_RS03535;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=C9E96_RS03535;old_locus_tag=C9E96_03585
NZ_PYJX01000046.1	Protein Homology	CDS	252	1280	.	+	0	ID=cds-WP_000149795.1;Parent=gene-C9E96_RS03535;Dbxref=GenBank:WP_000149795.1;Name=WP_000149795.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463011.1;locus_tag=C9E96_RS03535;product=UDP-N-acetylmuramate dehydrogenase;protein_id=WP_000149795.1;transl_table=11
NZ_PYJX01000046.1	RefSeq	gene	1277	2239	.	+	.	ID=gene-C9E96_RS03540;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=C9E96_RS03540;old_locus_tag=C9E96_03590
NZ_PYJX01000046.1	Protein Homology	CDS	1277	2239	.	+	0	ID=cds-WP_000655746.1;Parent=gene-C9E96_RS03540;Dbxref=GenBank:WP_000655746.1;Name=WP_000655746.1;Ontology_term=GO:0036211,GO:0004077;gbkey=CDS;gene=birA;go_function=biotin--[biotin carboxyl-carrier protein] ligase activity|0004077||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463012.1;locus_tag=C9E96_RS03540;product=bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;protein_id=WP_000655746.1;transl_table=11
NZ_PYJX01000046.1	RefSeq	gene	2274	3224	.	-	.	ID=gene-C9E96_RS03545;Name=coaA;gbkey=Gene;gene=coaA;gene_biotype=protein_coding;locus_tag=C9E96_RS03545;old_locus_tag=C9E96_03595
NZ_PYJX01000046.1	Protein Homology	CDS	2274	3224	.	-	0	ID=cds-WP_000023069.1;Parent=gene-C9E96_RS03545;Dbxref=GenBank:WP_000023069.1;Name=WP_000023069.1;Ontology_term=GO:0015937,GO:0004594;gbkey=CDS;gene=coaA;go_function=pantothenate kinase activity|0004594||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463013.1;locus_tag=C9E96_RS03545;product=type I pantothenate kinase;protein_id=WP_000023069.1;transl_table=11
NZ_PYJX01000046.1	RefSeq	gene	3433	3606	.	-	.	ID=gene-C9E96_RS03550;Name=C9E96_RS03550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03550;old_locus_tag=C9E96_03605
NZ_PYJX01000046.1	Protein Homology	CDS	3433	3606	.	-	0	ID=cds-WP_001621476.1;Parent=gene-C9E96_RS03550;Dbxref=GenBank:WP_001621476.1;Name=WP_001621476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463014.1;locus_tag=C9E96_RS03550;product=hypothetical protein;protein_id=WP_001621476.1;transl_table=11
NZ_PYJX01000046.1	RefSeq	gene	3626	3701	.	+	.	ID=gene-C9E96_RS03555;Name=C9E96_RS03555;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS03555;old_locus_tag=C9E96_03610
NZ_PYJX01000046.1	tRNAscan-SE	tRNA	3626	3701	.	+	.	ID=rna-C9E96_RS03555;Parent=gene-C9E96_RS03555;anticodon=(pos:3659..3661);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03555;product=tRNA-Thr
NZ_PYJX01000046.1	tRNAscan-SE	exon	3626	3701	.	+	.	ID=exon-C9E96_RS03555-1;Parent=rna-C9E96_RS03555;anticodon=(pos:3659..3661);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03555;product=tRNA-Thr
NZ_PYJX01000046.1	RefSeq	gene	3710	3794	.	+	.	ID=gene-C9E96_RS03560;Name=C9E96_RS03560;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS03560;old_locus_tag=C9E96_03615
NZ_PYJX01000046.1	tRNAscan-SE	tRNA	3710	3794	.	+	.	ID=rna-C9E96_RS03560;Parent=gene-C9E96_RS03560;anticodon=(pos:3744..3746);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03560;product=tRNA-Tyr
NZ_PYJX01000046.1	tRNAscan-SE	exon	3710	3794	.	+	.	ID=exon-C9E96_RS03560-1;Parent=rna-C9E96_RS03560;anticodon=(pos:3744..3746);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03560;product=tRNA-Tyr
NZ_PYJX01000046.1	RefSeq	gene	3911	3985	.	+	.	ID=gene-C9E96_RS03565;Name=C9E96_RS03565;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS03565;old_locus_tag=C9E96_03620
NZ_PYJX01000046.1	tRNAscan-SE	tRNA	3911	3985	.	+	.	ID=rna-C9E96_RS03565;Parent=gene-C9E96_RS03565;anticodon=(pos:3944..3946);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03565;product=tRNA-Gly
NZ_PYJX01000046.1	tRNAscan-SE	exon	3911	3985	.	+	.	ID=exon-C9E96_RS03565-1;Parent=rna-C9E96_RS03565;anticodon=(pos:3944..3946);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03565;product=tRNA-Gly
NZ_PYJX01000046.1	RefSeq	gene	3992	4067	.	+	.	ID=gene-C9E96_RS03570;Name=C9E96_RS03570;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS03570;old_locus_tag=C9E96_03625
NZ_PYJX01000046.1	tRNAscan-SE	tRNA	3992	4067	.	+	.	ID=rna-C9E96_RS03570;Parent=gene-C9E96_RS03570;anticodon=(pos:4025..4027);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03570;product=tRNA-Thr
NZ_PYJX01000046.1	tRNAscan-SE	exon	3992	4067	.	+	.	ID=exon-C9E96_RS03570-1;Parent=rna-C9E96_RS03570;anticodon=(pos:4025..4027);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03570;product=tRNA-Thr
NZ_PYJX01000046.1	RefSeq	gene	4183	4418	.	+	.	ID=gene-C9E96_RS03575;Name=C9E96_RS03575;end_range=4418,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03575;old_locus_tag=C9E96_03630;partial=true
NZ_PYJX01000046.1	Protein Homology	CDS	4183	4418	.	+	0	ID=cds-WP_000031667.1;Parent=gene-C9E96_RS03575;Dbxref=GenBank:WP_000031667.1;Name=WP_000031667.1;Ontology_term=GO:0003924,GO:0005525;end_range=4418,.;gbkey=CDS;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=C9E96_RS03575;partial=true;product=GTP-binding protein;protein_id=WP_000031667.1;transl_table=11
##sequence-region NZ_PYJX01000233.1 1 4373
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000233.1	RefSeq	region	1	4373	.	+	.	ID=NZ_PYJX01000233.1:1..4373;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000233.1	RefSeq	gene	1	740	.	-	.	ID=gene-C9E96_RS22415;Name=C9E96_RS22415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22415;old_locus_tag=C9E96_22990;partial=true;start_range=.,1
NZ_PYJX01000233.1	Protein Homology	CDS	1	740	.	-	0	ID=cds-WP_135494670.1;Parent=gene-C9E96_RS22415;Dbxref=GenBank:WP_135494670.1;Name=WP_135494670.1;Ontology_term=GO:0004176,GO:0004222,GO:0005524,GO:0008270,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,metalloendopeptidase activity|0004222||IEA,ATP binding|0005524||IEA,zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462207.1;locus_tag=C9E96_RS22415;partial=true;product=ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein;protein_id=WP_135494670.1;start_range=.,1;transl_table=11
NZ_PYJX01000233.1	RefSeq	gene	844	1470	.	-	.	ID=gene-C9E96_RS22420;Name=rlmE;gbkey=Gene;gene=rlmE;gene_biotype=protein_coding;locus_tag=C9E96_RS22420;old_locus_tag=C9E96_23000
NZ_PYJX01000233.1	Protein Homology	CDS	844	1470	.	-	0	ID=cds-WP_000145974.1;Parent=gene-C9E96_RS22420;Dbxref=GenBank:WP_000145974.1;Name=WP_000145974.1;Ontology_term=GO:0001510,GO:0006364,GO:0016436;gbkey=CDS;gene=rlmE;go_function=rRNA (uridine) methyltransferase activity|0016436||IEA;go_process=RNA methylation|0001510||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462208.1;locus_tag=C9E96_RS22420;product=23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE;protein_id=WP_000145974.1;transl_table=11
NZ_PYJX01000233.1	RefSeq	gene	1597	1890	.	+	.	ID=gene-C9E96_RS22425;Name=yhbY;gbkey=Gene;gene=yhbY;gene_biotype=protein_coding;locus_tag=C9E96_RS22425;old_locus_tag=C9E96_23005
NZ_PYJX01000233.1	Protein Homology	CDS	1597	1890	.	+	0	ID=cds-WP_001592995.1;Parent=gene-C9E96_RS22425;Dbxref=GenBank:WP_001592995.1;Name=WP_001592995.1;gbkey=CDS;gene=yhbY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014833438.1;locus_tag=C9E96_RS22425;product=ribosome assembly RNA-binding protein YhbY;protein_id=WP_001592995.1;transl_table=11
NZ_PYJX01000233.1	RefSeq	gene	2046	2522	.	-	.	ID=gene-C9E96_RS22430;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=C9E96_RS22430;old_locus_tag=C9E96_23010
NZ_PYJX01000233.1	Protein Homology	CDS	2046	2522	.	-	0	ID=cds-WP_001148008.1;Parent=gene-C9E96_RS22430;Dbxref=GenBank:WP_001148008.1;Name=WP_001148008.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greA;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006178768.1;locus_tag=C9E96_RS22430;product=transcription elongation factor GreA;protein_id=WP_001148008.1;transl_table=11
NZ_PYJX01000233.1	RefSeq	gene	2770	4203	.	+	.	ID=gene-C9E96_RS22435;Name=dacB;gbkey=Gene;gene=dacB;gene_biotype=protein_coding;locus_tag=C9E96_RS22435;old_locus_tag=C9E96_23015
NZ_PYJX01000233.1	Protein Homology	CDS	2770	4203	.	+	0	ID=cds-WP_023195695.1;Parent=gene-C9E96_RS22435;Dbxref=GenBank:WP_023195695.1;Name=WP_023195695.1;Ontology_term=GO:0006508,GO:0004185;gbkey=CDS;gene=dacB;go_function=serine-type carboxypeptidase activity|0004185||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462211.1;locus_tag=C9E96_RS22435;product=serine-type D-Ala-D-Ala carboxypeptidase;protein_id=WP_023195695.1;transl_table=11
##sequence-region NZ_PYJX01000018.1 1 4178
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000018.1	RefSeq	region	1	4178	.	+	.	ID=NZ_PYJX01000018.1:1..4178;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000018.1	RefSeq	pseudogene	1	503	.	-	.	ID=gene-C9E96_RS01170;Name=C9E96_RS01170;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01170;old_locus_tag=C9E96_01200;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000018.1	Protein Homology	CDS	1	503	.	-	0	ID=cds-C9E96_RS01170;Parent=gene-C9E96_RS01170;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462381.1;locus_tag=C9E96_RS01170;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000018.1	RefSeq	gene	832	2205	.	-	.	ID=gene-C9E96_RS01175;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=C9E96_RS01175;old_locus_tag=C9E96_01205
NZ_PYJX01000018.1	Protein Homology	CDS	832	2205	.	-	0	ID=cds-WP_135493743.1;Parent=gene-C9E96_RS01175;Dbxref=GenBank:WP_135493743.1;Name=WP_135493743.1;Ontology_term=GO:0019354,GO:0004851,GO:0043115,GO:0051266,GO:0051287;gbkey=CDS;gene=cysG;go_function=uroporphyrin-III C-methyltransferase activity|0004851||IEA,precorrin-2 dehydrogenase activity|0043115||IEA,sirohydrochlorin ferrochelatase activity|0051266||IEA,NAD binding|0051287||IEA;go_process=siroheme biosynthetic process|0019354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462380.1;locus_tag=C9E96_RS01175;product=siroheme synthase CysG;protein_id=WP_135493743.1;transl_table=11
NZ_PYJX01000018.1	RefSeq	gene	2217	3026	.	-	.	ID=gene-C9E96_RS01180;Name=nirC;gbkey=Gene;gene=nirC;gene_biotype=protein_coding;locus_tag=C9E96_RS01180;old_locus_tag=C9E96_01210
NZ_PYJX01000018.1	Protein Homology	CDS	2217	3026	.	-	0	ID=cds-WP_000493576.1;Parent=gene-C9E96_RS01180;Dbxref=GenBank:WP_000493576.1;Name=WP_000493576.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=nirC;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462379.1;locus_tag=C9E96_RS01180;product=nitrite transporter NirC;protein_id=WP_000493576.1;transl_table=11
NZ_PYJX01000018.1	RefSeq	gene	3292	3618	.	-	.	ID=gene-C9E96_RS01185;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=C9E96_RS01185;old_locus_tag=C9E96_01215
NZ_PYJX01000018.1	Protein Homology	CDS	3292	3618	.	-	0	ID=cds-WP_000084814.1;Parent=gene-C9E96_RS01185;Dbxref=GenBank:WP_000084814.1;Name=WP_000084814.1;gbkey=CDS;gene=nirD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462378.1;locus_tag=C9E96_RS01185;product=nitrite reductase small subunit NirD;protein_id=WP_000084814.1;transl_table=11
NZ_PYJX01000018.1	RefSeq	pseudogene	3615	4178	.	-	.	ID=gene-C9E96_RS01190;Name=C9E96_RS01190;end_range=4178,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01190;old_locus_tag=C9E96_01220;partial=true;pseudo=true
NZ_PYJX01000018.1	Protein Homology	CDS	3615	4178	.	-	0	ID=cds-C9E96_RS01190;Parent=gene-C9E96_RS01190;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=4178,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462377.1;locus_tag=C9E96_RS01190;partial=true;product=nitrite reductase (NAD(P)H);pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000103.1 1 3877
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000103.1	RefSeq	region	1	3877	.	+	.	ID=NZ_PYJX01000103.1:1..3877;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000103.1	RefSeq	gene	1	1118	.	+	.	ID=gene-C9E96_RS08850;Name=pepQ;gbkey=Gene;gene=pepQ;gene_biotype=protein_coding;locus_tag=C9E96_RS08850;old_locus_tag=C9E96_09040;partial=true;start_range=.,1
NZ_PYJX01000103.1	Protein Homology	CDS	1	1118	.	+	2	ID=cds-WP_135494094.1;Parent=gene-C9E96_RS08850;Dbxref=GenBank:WP_135494094.1;Name=WP_135494094.1;gbkey=CDS;gene=pepQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462869.1;locus_tag=C9E96_RS08850;partial=true;product=Xaa-Pro dipeptidase;protein_id=WP_135494094.1;start_range=.,1;transl_table=11
NZ_PYJX01000103.1	RefSeq	gene	1118	1732	.	+	.	ID=gene-C9E96_RS08855;Name=C9E96_RS08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08855;old_locus_tag=C9E96_09045
NZ_PYJX01000103.1	Protein Homology	CDS	1118	1732	.	+	0	ID=cds-WP_080204086.1;Parent=gene-C9E96_RS08855;Dbxref=GenBank:WP_080204086.1;Name=WP_080204086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462870.1;locus_tag=C9E96_RS08855;product=IMPACT family protein;protein_id=WP_080204086.1;transl_table=11
NZ_PYJX01000103.1	RefSeq	gene	1771	3222	.	+	.	ID=gene-C9E96_RS08860;Name=trkH;gbkey=Gene;gene=trkH;gene_biotype=protein_coding;locus_tag=C9E96_RS08860;old_locus_tag=C9E96_09050
NZ_PYJX01000103.1	Protein Homology	CDS	1771	3222	.	+	0	ID=cds-WP_000545688.1;Parent=gene-C9E96_RS08860;Dbxref=GenBank:WP_000545688.1;Name=WP_000545688.1;gbkey=CDS;gene=trkH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004146450.1;locus_tag=C9E96_RS08860;product=Trk system potassium transporter TrkH;protein_id=WP_000545688.1;transl_table=11
NZ_PYJX01000103.1	RefSeq	gene	3234	3779	.	+	.	ID=gene-C9E96_RS08865;Name=hemG;gbkey=Gene;gene=hemG;gene_biotype=protein_coding;locus_tag=C9E96_RS08865;old_locus_tag=C9E96_09055
NZ_PYJX01000103.1	Protein Homology	CDS	3234	3779	.	+	0	ID=cds-WP_000853982.1;Parent=gene-C9E96_RS08865;Dbxref=GenBank:WP_000853982.1;Name=WP_000853982.1;gbkey=CDS;gene=hemG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462872.1;locus_tag=C9E96_RS08865;product=menaquinone-dependent protoporphyrinogen IX dehydrogenase;protein_id=WP_000853982.1;transl_table=11
##sequence-region NZ_PYJX01000093.1 1 3844
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000093.1	RefSeq	region	1	3844	.	+	.	ID=NZ_PYJX01000093.1:1..3844;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000093.1	RefSeq	gene	1	76	.	-	.	ID=gene-C9E96_RS08275;Name=C9E96_RS08275;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08275;old_locus_tag=C9E96_08465
NZ_PYJX01000093.1	tRNAscan-SE	tRNA	1	76	.	-	.	ID=rna-C9E96_RS08275;Parent=gene-C9E96_RS08275;anticodon=(pos:complement(41..43));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08275;product=tRNA-Lys
NZ_PYJX01000093.1	tRNAscan-SE	exon	1	76	.	-	.	ID=exon-C9E96_RS08275-1;Parent=rna-C9E96_RS08275;anticodon=(pos:complement(41..43));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08275;product=tRNA-Lys
NZ_PYJX01000093.1	RefSeq	gene	80	155	.	-	.	ID=gene-C9E96_RS08280;Name=C9E96_RS08280;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08280;old_locus_tag=C9E96_08470
NZ_PYJX01000093.1	tRNAscan-SE	tRNA	80	155	.	-	.	ID=rna-C9E96_RS08280;Parent=gene-C9E96_RS08280;anticodon=(pos:complement(120..122));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08280;product=tRNA-Val
NZ_PYJX01000093.1	tRNAscan-SE	exon	80	155	.	-	.	ID=exon-C9E96_RS08280-1;Parent=rna-C9E96_RS08280;anticodon=(pos:complement(120..122));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08280;product=tRNA-Val
NZ_PYJX01000093.1	RefSeq	gene	292	367	.	-	.	ID=gene-C9E96_RS08285;Name=C9E96_RS08285;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08285;old_locus_tag=C9E96_08475
NZ_PYJX01000093.1	tRNAscan-SE	tRNA	292	367	.	-	.	ID=rna-C9E96_RS08285;Parent=gene-C9E96_RS08285;anticodon=(pos:complement(332..334));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08285;product=tRNA-Lys
NZ_PYJX01000093.1	tRNAscan-SE	exon	292	367	.	-	.	ID=exon-C9E96_RS08285-1;Parent=rna-C9E96_RS08285;anticodon=(pos:complement(332..334));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08285;product=tRNA-Lys
NZ_PYJX01000093.1	RefSeq	gene	532	1320	.	-	.	ID=gene-C9E96_RS08290;Name=cpoB;gbkey=Gene;gene=cpoB;gene_biotype=protein_coding;locus_tag=C9E96_RS08290;old_locus_tag=C9E96_08480
NZ_PYJX01000093.1	Protein Homology	CDS	532	1320	.	-	0	ID=cds-WP_080204134.1;Parent=gene-C9E96_RS08290;Dbxref=GenBank:WP_080204134.1;Name=WP_080204134.1;Ontology_term=GO:0051301,GO:0070206,GO:0005515;gbkey=CDS;gene=cpoB;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA,protein trimerization|0070206||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459735.1;locus_tag=C9E96_RS08290;product=cell division protein CpoB;protein_id=WP_080204134.1;transl_table=11
NZ_PYJX01000093.1	RefSeq	gene	1330	1854	.	-	.	ID=gene-C9E96_RS08295;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=C9E96_RS08295;old_locus_tag=C9E96_08485
NZ_PYJX01000093.1	Protein Homology	CDS	1330	1854	.	-	0	ID=cds-WP_001176621.1;Parent=gene-C9E96_RS08295;Dbxref=GenBank:WP_001176621.1;Name=WP_001176621.1;gbkey=CDS;gene=pal;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459734.1;locus_tag=C9E96_RS08295;product=peptidoglycan-associated lipoprotein Pal;protein_id=WP_001176621.1;transl_table=11
NZ_PYJX01000093.1	RefSeq	gene	1889	3181	.	-	.	ID=gene-C9E96_RS08300;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=C9E96_RS08300;old_locus_tag=C9E96_08490
NZ_PYJX01000093.1	Protein Homology	CDS	1889	3181	.	-	0	ID=cds-WP_001562341.1;Parent=gene-C9E96_RS08300;Dbxref=GenBank:WP_001562341.1;Name=WP_001562341.1;Ontology_term=GO:0017038,GO:0005215,GO:0042597;gbkey=CDS;gene=tolB;go_component=periplasmic space|0042597||IEA;go_function=transporter activity|0005215||IEA;go_process=protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001646851.1;locus_tag=C9E96_RS08300;product=Tol-Pal system beta propeller repeat protein TolB;protein_id=WP_001562341.1;transl_table=11
NZ_PYJX01000093.1	RefSeq	gene	3305	3844	.	-	.	ID=gene-C9E96_RS08305;Name=tolA;end_range=3844,.;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=C9E96_RS08305;old_locus_tag=C9E96_08495;partial=true
NZ_PYJX01000093.1	Protein Homology	CDS	3305	3844	.	-	0	ID=cds-WP_000563978.1;Parent=gene-C9E96_RS08305;Dbxref=GenBank:WP_000563978.1;Name=WP_000563978.1;Ontology_term=GO:0043213,GO:0019534,GO:0016020;end_range=3844,.;gbkey=CDS;gene=tolA;go_component=membrane|0016020||IEA;go_function=toxin transmembrane transporter activity|0019534||IEA;go_process=bacteriocin transport|0043213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459732.1;locus_tag=C9E96_RS08305;partial=true;product=cell envelope integrity protein TolA;protein_id=WP_000563978.1;transl_table=11
##sequence-region NZ_PYJX01000196.1 1 3767
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000196.1	RefSeq	region	1	3767	.	+	.	ID=NZ_PYJX01000196.1:1..3767;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000196.1	RefSeq	gene	1	336	.	+	.	ID=gene-C9E96_RS19585;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=C9E96_RS19585;old_locus_tag=C9E96_20100;partial=true;start_range=.,1
NZ_PYJX01000196.1	Protein Homology	CDS	1	336	.	+	0	ID=cds-WP_135494509.1;Parent=gene-C9E96_RS19585;Dbxref=GenBank:WP_135494509.1;Name=WP_135494509.1;gbkey=CDS;gene=fabZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000210741.1;locus_tag=C9E96_RS19585;partial=true;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_135494509.1;start_range=.,1;transl_table=11
NZ_PYJX01000196.1	RefSeq	gene	340	1128	.	+	.	ID=gene-C9E96_RS19590;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=C9E96_RS19590;old_locus_tag=C9E96_20105
NZ_PYJX01000196.1	Protein Homology	CDS	340	1128	.	+	0	ID=cds-WP_000565949.1;Parent=gene-C9E96_RS19590;Dbxref=GenBank:WP_000565949.1;Name=WP_000565949.1;Ontology_term=GO:0008610,GO:0008780;gbkey=CDS;gene=lpxA;go_function=acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|0008780||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132096.1;locus_tag=C9E96_RS19590;product=acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_000565949.1;transl_table=11
NZ_PYJX01000196.1	RefSeq	gene	1128	2276	.	+	.	ID=gene-C9E96_RS19595;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=C9E96_RS19595;old_locus_tag=C9E96_20110
NZ_PYJX01000196.1	Protein Homology	CDS	1128	2276	.	+	0	ID=cds-WP_000741216.1;Parent=gene-C9E96_RS19595;Dbxref=GenBank:WP_000741216.1;Name=WP_000741216.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;gene=lpxB;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459234.1;locus_tag=C9E96_RS19595;product=lipid-A-disaccharide synthase;protein_id=WP_000741216.1;transl_table=11
NZ_PYJX01000196.1	RefSeq	gene	2273	2869	.	+	.	ID=gene-C9E96_RS19600;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=C9E96_RS19600;old_locus_tag=C9E96_20115
NZ_PYJX01000196.1	Protein Homology	CDS	2273	2869	.	+	0	ID=cds-WP_000569412.1;Parent=gene-C9E96_RS19600;Dbxref=GenBank:WP_000569412.1;Name=WP_000569412.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;gene=rnhB;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459235.1;locus_tag=C9E96_RS19600;product=ribonuclease HII;protein_id=WP_000569412.1;transl_table=11
NZ_PYJX01000196.1	RefSeq	gene	2893	3767	.	+	.	ID=gene-C9E96_RS19605;Name=C9E96_RS19605;end_range=3767,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19605;old_locus_tag=C9E96_20120;partial=true
NZ_PYJX01000196.1	Protein Homology	CDS	2893	3767	.	+	0	ID=cds-WP_135494511.1;Parent=gene-C9E96_RS19605;Dbxref=GenBank:WP_135494511.1;Name=WP_135494511.1;Ontology_term=GO:0003824;end_range=3767,.;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459236.1;locus_tag=C9E96_RS19605;partial=true;product=PHP domain-containing protein;protein_id=WP_135494511.1;transl_table=11
##sequence-region NZ_PYJX01000049.1 1 3749
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000049.1	RefSeq	region	1	3749	.	+	.	ID=NZ_PYJX01000049.1:1..3749;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000049.1	RefSeq	gene	1	800	.	-	.	ID=gene-C9E96_RS04345;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=C9E96_RS04345;old_locus_tag=C9E96_04445;partial=true;start_range=.,1
NZ_PYJX01000049.1	Protein Homology	CDS	1	800	.	-	0	ID=cds-WP_135493874.1;Parent=gene-C9E96_RS04345;Dbxref=GenBank:WP_135493874.1;Name=WP_135493874.1;Note=Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein.;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=asd;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463212.1;locus_tag=C9E96_RS04345;partial=true;product=archaetidylserine decarboxylase;protein_id=WP_135493874.1;start_range=.,1;transl_table=11
NZ_PYJX01000049.1	RefSeq	gene	892	1944	.	-	.	ID=gene-C9E96_RS04350;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=C9E96_RS04350;old_locus_tag=C9E96_04450
NZ_PYJX01000049.1	Protein Homology	CDS	892	1944	.	-	0	ID=cds-WP_000041945.1;Parent=gene-C9E96_RS04350;Dbxref=GenBank:WP_000041945.1;Name=WP_000041945.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=rsgA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313167.2;locus_tag=C9E96_RS04350;product=small ribosomal subunit biogenesis GTPase RsgA;protein_id=WP_000041945.1;transl_table=11
NZ_PYJX01000049.1	RefSeq	gene	2051	2596	.	+	.	ID=gene-C9E96_RS04355;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=C9E96_RS04355;old_locus_tag=C9E96_04455
NZ_PYJX01000049.1	Protein Homology	CDS	2051	2596	.	+	0	ID=cds-WP_001271546.1;Parent=gene-C9E96_RS04355;Dbxref=GenBank:WP_001271546.1;Name=WP_001271546.1;Ontology_term=GO:0000175,GO:0003676;gbkey=CDS;gene=orn;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882950.1;locus_tag=C9E96_RS04355;product=oligoribonuclease;protein_id=WP_001271546.1;transl_table=11
NZ_PYJX01000049.1	RefSeq	gene	2658	3398	.	-	.	ID=gene-C9E96_RS04360;Name=C9E96_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04360;old_locus_tag=C9E96_04460
NZ_PYJX01000049.1	Protein Homology	CDS	2658	3398	.	-	0	ID=cds-WP_000727897.1;Parent=gene-C9E96_RS04360;Dbxref=GenBank:WP_000727897.1;Name=WP_000727897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463215.3;locus_tag=C9E96_RS04360;product=arginine ABC transporter substrate-binding protein;protein_id=WP_000727897.1;transl_table=11
NZ_PYJX01000049.1	RefSeq	gene	3674	3749	.	+	.	ID=gene-C9E96_RS04365;Name=C9E96_RS04365;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS04365;old_locus_tag=C9E96_04465
NZ_PYJX01000049.1	tRNAscan-SE	tRNA	3674	3749	.	+	.	ID=rna-C9E96_RS04365;Parent=gene-C9E96_RS04365;anticodon=(pos:3707..3709);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04365;product=tRNA-Gly
NZ_PYJX01000049.1	tRNAscan-SE	exon	3674	3749	.	+	.	ID=exon-C9E96_RS04365-1;Parent=rna-C9E96_RS04365;anticodon=(pos:3707..3709);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04365;product=tRNA-Gly
##sequence-region NZ_PYJX01000234.1 1 3579
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000234.1	RefSeq	region	1	3579	.	+	.	ID=NZ_PYJX01000234.1:1..3579;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000234.1	RefSeq	pseudogene	52	114	.	+	.	ID=gene-C9E96_RS24360;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=pseudogene;locus_tag=C9E96_RS24360;old_locus_tag=C9E96_23020;partial=true;pseudo=true;start_range=.,52
NZ_PYJX01000234.1	Protein Homology	CDS	52	114	.	+	0	ID=cds-C9E96_RS24360;Parent=gene-C9E96_RS24360;Note=catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;gene=cobU;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000973148.1;locus_tag=C9E96_RS24360;partial=true;product=bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase;pseudo=true;start_range=.,52;transl_table=11
NZ_PYJX01000234.1	RefSeq	gene	111	854	.	+	.	ID=gene-C9E96_RS22445;Name=cobS;gbkey=Gene;gene=cobS;gene_biotype=protein_coding;locus_tag=C9E96_RS22445;old_locus_tag=C9E96_23025
NZ_PYJX01000234.1	Protein Homology	CDS	111	854	.	+	0	ID=cds-WP_000039997.1;Parent=gene-C9E96_RS22445;Dbxref=GenBank:WP_000039997.1;Name=WP_000039997.1;Ontology_term=GO:0009236,GO:0008818,GO:0051073;gbkey=CDS;gene=cobS;go_function=cobalamin 5'-phosphate synthase activity|0008818||IEA,adenosylcobinamide-GDP ribazoletransferase activity|0051073||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460962.1;locus_tag=C9E96_RS22445;product=adenosylcobinamide-GDP ribazoletransferase;protein_id=WP_000039997.1;transl_table=11
NZ_PYJX01000234.1	RefSeq	gene	881	1951	.	+	.	ID=gene-C9E96_RS22450;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;locus_tag=C9E96_RS22450;old_locus_tag=C9E96_23030
NZ_PYJX01000234.1	Protein Homology	CDS	881	1951	.	+	0	ID=cds-WP_001193976.1;Parent=gene-C9E96_RS22450;Dbxref=GenBank:WP_001193976.1;Name=WP_001193976.1;Ontology_term=GO:0009236,GO:0008939;gbkey=CDS;gene=cobT;go_function=nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity|0008939||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460961.1;locus_tag=C9E96_RS22450;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=WP_001193976.1;transl_table=11
NZ_PYJX01000234.1	RefSeq	gene	2029	2958	.	+	.	ID=gene-C9E96_RS22455;Name=ldtA;gbkey=Gene;gene=ldtA;gene_biotype=protein_coding;locus_tag=C9E96_RS22455;old_locus_tag=C9E96_23035
NZ_PYJX01000234.1	Protein Homology	CDS	2029	2958	.	+	0	ID=cds-WP_001252828.1;Parent=gene-C9E96_RS22455;Dbxref=GenBank:WP_001252828.1;Name=WP_001252828.1;Ontology_term=GO:0016740;gbkey=CDS;gene=ldtA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460960.1;locus_tag=C9E96_RS22455;product=L%2CD-transpeptidase;protein_id=WP_001252828.1;transl_table=11
NZ_PYJX01000234.1	RefSeq	gene	3184	3259	.	-	.	ID=gene-C9E96_RS22460;Name=C9E96_RS22460;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS22460;old_locus_tag=C9E96_23040
NZ_PYJX01000234.1	tRNAscan-SE	tRNA	3184	3259	.	-	.	ID=rna-C9E96_RS22460;Parent=gene-C9E96_RS22460;anticodon=(pos:complement(3224..3226));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS22460;product=tRNA-Asn
NZ_PYJX01000234.1	tRNAscan-SE	exon	3184	3259	.	-	.	ID=exon-C9E96_RS22460-1;Parent=rna-C9E96_RS22460;anticodon=(pos:complement(3224..3226));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS22460;product=tRNA-Asn
NZ_PYJX01000234.1	RefSeq	pseudogene	3419	3579	.	+	.	ID=gene-C9E96_RS22465;Name=C9E96_RS22465;end_range=3579,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS22465;old_locus_tag=C9E96_23045;partial=true;pseudo=true
NZ_PYJX01000234.1	Protein Homology	CDS	3419	3579	.	+	0	ID=cds-C9E96_RS22465;Parent=gene-C9E96_RS22465;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=3579,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460959.1;locus_tag=C9E96_RS22465;partial=true;product=FMN/FAD transporter;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000167.1 1 50131
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000167.1	RefSeq	region	1	50131	.	+	.	ID=NZ_PYJX01000167.1:1..50131;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000167.1	RefSeq	gene	1	1313	.	-	.	ID=gene-C9E96_RS15720;Name=yicI;gbkey=Gene;gene=yicI;gene_biotype=protein_coding;locus_tag=C9E96_RS15720;old_locus_tag=C9E96_16105;partial=true;start_range=.,1
NZ_PYJX01000167.1	Protein Homology	CDS	1	1313	.	-	0	ID=cds-WP_135494368.1;Parent=gene-C9E96_RS15720;Dbxref=GenBank:WP_135494368.1;Name=WP_135494368.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=yicI;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462649.1;locus_tag=C9E96_RS15720;partial=true;product=alpha-xylosidase;protein_id=WP_135494368.1;start_range=.,1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	1325	2707	.	-	.	ID=gene-C9E96_RS15725;Name=C9E96_RS15725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15725;old_locus_tag=C9E96_16110
NZ_PYJX01000167.1	Protein Homology	CDS	1325	2707	.	-	0	ID=cds-WP_000834259.1;Parent=gene-C9E96_RS15725;Dbxref=GenBank:WP_000834259.1;Name=WP_000834259.1;Ontology_term=GO:0006814,GO:0008643,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462650.1;locus_tag=C9E96_RS15725;product=glycoside-pentoside-hexuronide family transporter;protein_id=WP_000834259.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	2995	3089	.	+	.	ID=gene-C9E96_RS15730;Name=C9E96_RS15730;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS15730;old_locus_tag=C9E96_16115
NZ_PYJX01000167.1	tRNAscan-SE	tRNA	2995	3089	.	+	.	ID=rna-C9E96_RS15730;Parent=gene-C9E96_RS15730;anticodon=(pos:3029..3031);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS15730;product=tRNA-Sec
NZ_PYJX01000167.1	tRNAscan-SE	exon	2995	3089	.	+	.	ID=exon-C9E96_RS15730-1;Parent=rna-C9E96_RS15730;anticodon=(pos:3029..3031);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS15730;product=tRNA-Sec
NZ_PYJX01000167.1	RefSeq	gene	3317	3475	.	+	.	ID=gene-C9E96_RS24440;Name=C9E96_RS24440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24440
NZ_PYJX01000167.1	Protein Homology	CDS	3317	3475	.	+	0	ID=cds-WP_342365454.1;Parent=gene-C9E96_RS24440;Dbxref=GenBank:WP_342365454.1;Name=WP_342365454.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF024750.6;locus_tag=C9E96_RS24440;product=Arm DNA-binding domain-containing protein;protein_id=WP_342365454.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	pseudogene	3526	3695	.	+	.	ID=gene-C9E96_RS24270;Name=C9E96_RS24270;end_range=3695,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24270;old_locus_tag=C9E96_16120;partial=true;pseudo=true
NZ_PYJX01000167.1	Protein Homology	CDS	3526	3695	.	+	0	ID=cds-C9E96_RS24270;Parent=gene-C9E96_RS24270;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3695,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611197.1;locus_tag=C9E96_RS24270;partial=true;product=transposase;pseudo=true;transl_table=11
NZ_PYJX01000167.1	RefSeq	pseudogene	3799	3933	.	-	.	ID=gene-C9E96_RS24545;Name=C9E96_RS24545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24545;partial=true;pseudo=true;start_range=.,3799
NZ_PYJX01000167.1	Protein Homology	CDS	3799	3933	.	-	0	ID=cds-C9E96_RS24545;Parent=gene-C9E96_RS24545;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004149226.1;locus_tag=C9E96_RS24545;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3799;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	4276	5505	.	-	.	ID=gene-C9E96_RS15740;Name=C9E96_RS15740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15740;old_locus_tag=C9E96_16125
NZ_PYJX01000167.1	Protein Homology	CDS	4276	5505	.	-	0	ID=cds-WP_000152783.1;Parent=gene-C9E96_RS15740;Dbxref=GenBank:WP_000152783.1;Name=WP_000152783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006892393.1;locus_tag=C9E96_RS15740;product=fimbrial-like adhesin;protein_id=WP_000152783.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	5529	6122	.	-	.	ID=gene-C9E96_RS15745;Name=C9E96_RS15745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15745;old_locus_tag=C9E96_16130
NZ_PYJX01000167.1	Protein Homology	CDS	5529	6122	.	-	0	ID=cds-WP_000957977.1;Parent=gene-C9E96_RS15745;Dbxref=GenBank:WP_000957977.1;Name=WP_000957977.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000957977.1;locus_tag=C9E96_RS15745;product=fimbrial-like protein;protein_id=WP_000957977.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	6138	6746	.	-	.	ID=gene-C9E96_RS15750;Name=C9E96_RS15750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15750;old_locus_tag=C9E96_16135
NZ_PYJX01000167.1	Protein Homology	CDS	6138	6746	.	-	0	ID=cds-WP_001080417.1;Parent=gene-C9E96_RS15750;Dbxref=GenBank:WP_001080417.1;Name=WP_001080417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001080417.1;locus_tag=C9E96_RS15750;product=fimbrial protein;protein_id=WP_001080417.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	6761	7345	.	-	.	ID=gene-C9E96_RS15755;Name=C9E96_RS15755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15755;old_locus_tag=C9E96_16140
NZ_PYJX01000167.1	Protein Homology	CDS	6761	7345	.	-	0	ID=cds-WP_039590871.1;Parent=gene-C9E96_RS15755;Dbxref=GenBank:WP_039590871.1;Name=WP_039590871.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006892398.1;locus_tag=C9E96_RS15755;product=fimbrial protein;protein_id=WP_039590871.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	7359	9959	.	-	.	ID=gene-C9E96_RS15760;Name=C9E96_RS15760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15760;old_locus_tag=C9E96_16145
NZ_PYJX01000167.1	Protein Homology	CDS	7359	9959	.	-	0	ID=cds-WP_001747525.1;Parent=gene-C9E96_RS15760;Dbxref=GenBank:WP_001747525.1;Name=WP_001747525.1;Ontology_term=GO:0009297,GO:0005515,GO:0015473,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA,fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747525.1;locus_tag=C9E96_RS15760;product=outer membrane usher protein;protein_id=WP_001747525.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	9980	10723	.	-	.	ID=gene-C9E96_RS15765;Name=C9E96_RS15765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15765;old_locus_tag=C9E96_16150
NZ_PYJX01000167.1	Protein Homology	CDS	9980	10723	.	-	0	ID=cds-WP_000882257.1;Parent=gene-C9E96_RS15765;Dbxref=GenBank:WP_000882257.1;Name=WP_000882257.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000882257.1;locus_tag=C9E96_RS15765;product=fimbrial chaperone;protein_id=WP_000882257.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	10867	11493	.	-	.	ID=gene-C9E96_RS15770;Name=C9E96_RS15770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15770;old_locus_tag=C9E96_16155
NZ_PYJX01000167.1	Protein Homology	CDS	10867	11493	.	-	0	ID=cds-WP_000753270.1;Parent=gene-C9E96_RS15770;Dbxref=GenBank:WP_000753270.1;Name=WP_000753270.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006892400.1;locus_tag=C9E96_RS15770;product=fimbrial protein;protein_id=WP_000753270.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	pseudogene	11885	12194	.	-	.	ID=gene-C9E96_RS15775;Name=C9E96_RS15775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS15775;old_locus_tag=C9E96_16160;partial=true;pseudo=true;start_range=.,11885
NZ_PYJX01000167.1	Protein Homology	CDS	11885	12194	.	-	0	ID=cds-C9E96_RS15775;Parent=gene-C9E96_RS15775;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001395480.1;locus_tag=C9E96_RS15775;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,11885;transl_table=11
NZ_PYJX01000167.1	RefSeq	pseudogene	12809	12940	.	+	.	ID=gene-C9E96_RS23970;Name=C9E96_RS23970;end_range=12940,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23970;partial=true;pseudo=true
NZ_PYJX01000167.1	Protein Homology	CDS	12809	12940	.	+	0	ID=cds-C9E96_RS23970;Parent=gene-C9E96_RS23970;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=12940,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015671526.1;locus_tag=C9E96_RS23970;partial=true;product=transposase;pseudo=true;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	13676	14293	.	+	.	ID=gene-C9E96_RS15785;Name=C9E96_RS15785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15785;old_locus_tag=C9E96_16170
NZ_PYJX01000167.1	Protein Homology	CDS	13676	14293	.	+	0	ID=cds-WP_000984812.1;Parent=gene-C9E96_RS15785;Dbxref=GenBank:WP_000984812.1;Name=WP_000984812.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462655.1;locus_tag=C9E96_RS15785;product=helix-turn-helix transcriptional regulator;protein_id=WP_000984812.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	14368	17181	.	+	.	ID=gene-C9E96_RS15790;Name=misL;gbkey=Gene;gene=misL;gene_biotype=protein_coding;locus_tag=C9E96_RS15790;old_locus_tag=C9E96_16175
NZ_PYJX01000167.1	Protein Homology	CDS	14368	17181	.	+	0	ID=cds-WP_135494370.1;Parent=gene-C9E96_RS15790;Dbxref=GenBank:WP_135494370.1;Name=WP_135494370.1;gbkey=CDS;gene=misL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462656.1;locus_tag=C9E96_RS15790;product=intestinal colonization autotransporter adhesin MisL;protein_id=WP_135494370.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	17276	17740	.	-	.	ID=gene-C9E96_RS15795;Name=C9E96_RS15795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15795;old_locus_tag=C9E96_16180
NZ_PYJX01000167.1	Protein Homology	CDS	17276	17740	.	-	0	ID=cds-WP_001521985.1;Parent=gene-C9E96_RS15795;Dbxref=GenBank:WP_001521985.1;Name=WP_001521985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462657.1;locus_tag=C9E96_RS15795;product=hypothetical protein;protein_id=WP_001521985.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	17751	18608	.	-	.	ID=gene-C9E96_RS15800;Name=C9E96_RS15800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15800;old_locus_tag=C9E96_16185
NZ_PYJX01000167.1	Protein Homology	CDS	17751	18608	.	-	0	ID=cds-WP_001278066.1;Parent=gene-C9E96_RS15800;Dbxref=GenBank:WP_001278066.1;Name=WP_001278066.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462658.4;locus_tag=C9E96_RS15800;product=winged helix-turn-helix domain-containing protein;protein_id=WP_001278066.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	19392	20072	.	+	.	ID=gene-C9E96_RS15810;Name=C9E96_RS15810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15810;old_locus_tag=C9E96_16195
NZ_PYJX01000167.1	Protein Homology	CDS	19392	20072	.	+	0	ID=cds-WP_000106461.1;Parent=gene-C9E96_RS15810;Dbxref=GenBank:WP_000106461.1;Name=WP_000106461.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462660.1;locus_tag=C9E96_RS15810;product=isochorismatase family protein;protein_id=WP_000106461.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	20301	20780	.	-	.	ID=gene-C9E96_RS15815;Name=cigR;gbkey=Gene;gene=cigR;gene_biotype=protein_coding;locus_tag=C9E96_RS15815;old_locus_tag=C9E96_16205
NZ_PYJX01000167.1	Protein Homology	CDS	20301	20780	.	-	0	ID=cds-WP_001065327.1;Parent=gene-C9E96_RS15815;Dbxref=GenBank:WP_001065327.1;Name=WP_001065327.1;gbkey=CDS;gene=cigR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462661.1;locus_tag=C9E96_RS15815;product=anti-virulence regulatory inner membrane protein CigR;protein_id=WP_001065327.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	20882	20968	.	-	.	ID=gene-C9E96_RS24385;Name=mgtU;gbkey=Gene;gene=mgtU;gene_biotype=protein_coding;locus_tag=C9E96_RS24385
NZ_PYJX01000167.1	Protein Homology	CDS	20882	20968	.	-	0	ID=cds-WP_252515021.1;Parent=gene-C9E96_RS24385;Dbxref=GenBank:WP_252515021.1;Name=WP_252515021.1;gbkey=CDS;gene=mgtU;inference=COORDINATES: similar to AA sequence:RefSeq:WP_251009859.1;locus_tag=C9E96_RS24385;product=magnesium transporter protection protein MgtU;protein_id=WP_252515021.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	20981	21073	.	-	.	ID=gene-C9E96_RS15820;Name=mgtR;gbkey=Gene;gene=mgtR;gene_biotype=protein_coding;locus_tag=C9E96_RS15820;old_locus_tag=C9E96_16210
NZ_PYJX01000167.1	Protein Homology	CDS	20981	21073	.	-	0	ID=cds-WP_001082117.1;Parent=gene-C9E96_RS15820;Dbxref=GenBank:WP_001082117.1;Name=WP_001082117.1;gbkey=CDS;gene=mgtR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001082117.1;locus_tag=C9E96_RS15820;product=protein MgtR;protein_id=WP_001082117.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	21095	23821	.	-	.	ID=gene-C9E96_RS15825;Name=mgtA;gbkey=Gene;gene=mgtA;gene_biotype=protein_coding;locus_tag=C9E96_RS15825;old_locus_tag=C9E96_16215
NZ_PYJX01000167.1	Protein Homology	CDS	21095	23821	.	-	0	ID=cds-WP_135494372.1;Parent=gene-C9E96_RS15825;Dbxref=GenBank:WP_135494372.1;Name=WP_135494372.1;Ontology_term=GO:0015693,GO:0015444,GO:0016020;gbkey=CDS;gene=mgtA;go_component=membrane|0016020||IEA;go_function=P-type magnesium transporter activity|0015444||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462662.1;locus_tag=C9E96_RS15825;product=magnesium-translocating P-type ATPase;protein_id=WP_135494372.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	24041	24736	.	-	.	ID=gene-C9E96_RS15830;Name=C9E96_RS15830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15830;old_locus_tag=C9E96_16220
NZ_PYJX01000167.1	Protein Homology	CDS	24041	24736	.	-	0	ID=cds-WP_000392700.1;Parent=gene-C9E96_RS15830;Dbxref=GenBank:WP_000392700.1;Name=WP_000392700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462663.1;locus_tag=C9E96_RS15830;product=MgtC family protein;protein_id=WP_000392700.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	25245	26147	.	+	.	ID=gene-C9E96_RS15835;Name=C9E96_RS15835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15835;old_locus_tag=C9E96_16225
NZ_PYJX01000167.1	Protein Homology	CDS	25245	26147	.	+	0	ID=cds-WP_001682335.1;Parent=gene-C9E96_RS15835;Dbxref=GenBank:WP_001682335.1;Name=WP_001682335.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462664.1;locus_tag=C9E96_RS15835;product=EamA family transporter;protein_id=WP_001682335.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	26190	27131	.	-	.	ID=gene-C9E96_RS15840;Name=C9E96_RS15840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15840;old_locus_tag=C9E96_16230
NZ_PYJX01000167.1	Protein Homology	CDS	26190	27131	.	-	0	ID=cds-WP_039590861.1;Parent=gene-C9E96_RS15840;Dbxref=GenBank:WP_039590861.1;Name=WP_039590861.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462665.1;locus_tag=C9E96_RS15840;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_039590861.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	27367	28110	.	-	.	ID=gene-C9E96_RS15845;Name=dagF;gbkey=Gene;gene=dagF;gene_biotype=protein_coding;locus_tag=C9E96_RS15845;old_locus_tag=C9E96_16235
NZ_PYJX01000167.1	Protein Homology	CDS	27367	28110	.	-	0	ID=cds-WP_001186147.1;Parent=gene-C9E96_RS15845;Dbxref=GenBank:WP_001186147.1;Name=WP_001186147.1;Ontology_term=GO:0008675;gbkey=CDS;gene=dagF;go_function=2-dehydro-3-deoxy-phosphogluconate aldolase activity|0008675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462666.1;locus_tag=C9E96_RS15845;product=2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_001186147.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	28097	29206	.	-	.	ID=gene-C9E96_RS15850;Name=dgaE;gbkey=Gene;gene=dgaE;gene_biotype=protein_coding;locus_tag=C9E96_RS15850;old_locus_tag=C9E96_16240
NZ_PYJX01000167.1	Protein Homology	CDS	28097	29206	.	-	0	ID=cds-WP_020838466.1;Parent=gene-C9E96_RS15850;Dbxref=GenBank:WP_020838466.1;Name=WP_020838466.1;Ontology_term=GO:0016829;gbkey=CDS;gene=dgaE;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462667.1;locus_tag=C9E96_RS15850;product=D-glucosaminate-6-phosphate ammonia lyase;protein_id=WP_020838466.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	29210	30070	.	-	.	ID=gene-C9E96_RS15855;Name=C9E96_RS15855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15855;old_locus_tag=C9E96_16245
NZ_PYJX01000167.1	Protein Homology	CDS	29210	30070	.	-	0	ID=cds-WP_167852895.1;Parent=gene-C9E96_RS15855;Dbxref=GenBank:WP_167852895.1;Name=WP_167852895.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462668.3;locus_tag=C9E96_RS15855;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_167852895.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	30067	30816	.	-	.	ID=gene-C9E96_RS15860;Name=C9E96_RS15860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15860;old_locus_tag=C9E96_16250
NZ_PYJX01000167.1	Protein Homology	CDS	30067	30816	.	-	0	ID=cds-WP_000380259.1;Parent=gene-C9E96_RS15860;Dbxref=GenBank:WP_000380259.1;Name=WP_000380259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462669.1;locus_tag=C9E96_RS15860;product=PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC;protein_id=WP_000380259.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	30962	31447	.	-	.	ID=gene-C9E96_RS15865;Name=C9E96_RS15865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15865;old_locus_tag=C9E96_16255
NZ_PYJX01000167.1	Protein Homology	CDS	30962	31447	.	-	0	ID=cds-WP_001284295.1;Parent=gene-C9E96_RS15865;Dbxref=GenBank:WP_001284295.1;Name=WP_001284295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462670.1;locus_tag=C9E96_RS15865;product=PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB;protein_id=WP_001284295.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	31458	31883	.	-	.	ID=gene-C9E96_RS15870;Name=C9E96_RS15870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15870;old_locus_tag=C9E96_16260
NZ_PYJX01000167.1	Protein Homology	CDS	31458	31883	.	-	0	ID=cds-WP_000214106.1;Parent=gene-C9E96_RS15870;Dbxref=GenBank:WP_000214106.1;Name=WP_000214106.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462671.1;locus_tag=C9E96_RS15870;product=PTS sugar transporter subunit IIA;protein_id=WP_000214106.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	32105	34903	.	-	.	ID=gene-C9E96_RS15875;Name=dagR;gbkey=Gene;gene=dagR;gene_biotype=protein_coding;locus_tag=C9E96_RS15875;old_locus_tag=C9E96_16270
NZ_PYJX01000167.1	Protein Homology	CDS	32105	34903	.	-	0	ID=cds-WP_135494373.1;Parent=gene-C9E96_RS15875;Dbxref=GenBank:WP_135494373.1;Name=WP_135494373.1;Ontology_term=GO:0006355,GO:0009401,GO:0005524,GO:0016887;gbkey=CDS;gene=dagR;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462672.1;locus_tag=C9E96_RS15875;product=transcriptional regulator DagR;protein_id=WP_135494373.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	35100	35393	.	+	.	ID=gene-C9E96_RS15880;Name=C9E96_RS15880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15880;old_locus_tag=C9E96_16275
NZ_PYJX01000167.1	Protein Homology	CDS	35100	35393	.	+	0	ID=cds-WP_023138298.1;Parent=gene-C9E96_RS15880;Dbxref=GenBank:WP_023138298.1;Name=WP_023138298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462673.1;locus_tag=C9E96_RS15880;product=YicS family protein;protein_id=WP_023138298.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	35499	36881	.	+	.	ID=gene-C9E96_RS15885;Name=C9E96_RS15885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15885;old_locus_tag=C9E96_16280
NZ_PYJX01000167.1	Protein Homology	CDS	35499	36881	.	+	0	ID=cds-WP_023993458.1;Parent=gene-C9E96_RS15885;Dbxref=GenBank:WP_023993458.1;Name=WP_023993458.1;Ontology_term=GO:0005975,GO:0016798;gbkey=CDS;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462674.1;locus_tag=C9E96_RS15885;product=glycoside hydrolase family 1 protein;protein_id=WP_023993458.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	36941	38134	.	-	.	ID=gene-C9E96_RS15890;Name=nepI;gbkey=Gene;gene=nepI;gene_biotype=protein_coding;locus_tag=C9E96_RS15890;old_locus_tag=C9E96_16285
NZ_PYJX01000167.1	Protein Homology	CDS	36941	38134	.	-	0	ID=cds-WP_001004798.1;Parent=gene-C9E96_RS15890;Dbxref=GenBank:WP_001004798.1;Name=WP_001004798.1;Ontology_term=GO:0015860,GO:0015211,GO:0016020;gbkey=CDS;gene=nepI;go_component=membrane|0016020||IEA;go_function=purine nucleoside transmembrane transporter activity|0015211||IEA;go_process=purine nucleoside transmembrane transport|0015860||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462675.1;locus_tag=C9E96_RS15890;product=purine ribonucleoside efflux pump NepI;protein_id=WP_001004798.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	38350	38709	.	+	.	ID=gene-C9E96_RS15895;Name=C9E96_RS15895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15895;old_locus_tag=C9E96_16290
NZ_PYJX01000167.1	Protein Homology	CDS	38350	38709	.	+	0	ID=cds-WP_023216562.1;Parent=gene-C9E96_RS15895;Dbxref=GenBank:WP_023216562.1;Name=WP_023216562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462676.1;locus_tag=C9E96_RS15895;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_023216562.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	38693	39016	.	+	.	ID=gene-C9E96_RS15900;Name=C9E96_RS15900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15900;old_locus_tag=C9E96_16295
NZ_PYJX01000167.1	Protein Homology	CDS	38693	39016	.	+	0	ID=cds-WP_001274839.1;Parent=gene-C9E96_RS15900;Dbxref=GenBank:WP_001274839.1;Name=WP_001274839.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462677.1;locus_tag=C9E96_RS15900;product=helix-turn-helix domain-containing protein;protein_id=WP_001274839.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	39107	39376	.	-	.	ID=gene-C9E96_RS15905;Name=C9E96_RS15905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15905;old_locus_tag=C9E96_16300
NZ_PYJX01000167.1	Protein Homology	CDS	39107	39376	.	-	0	ID=cds-WP_000621109.1;Parent=gene-C9E96_RS15905;Dbxref=GenBank:WP_000621109.1;Name=WP_000621109.1;Ontology_term=GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462678.1;locus_tag=C9E96_RS15905;product=HPr family phosphocarrier protein;protein_id=WP_000621109.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	39386	40246	.	-	.	ID=gene-C9E96_RS15910;Name=C9E96_RS15910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15910;old_locus_tag=C9E96_16305
NZ_PYJX01000167.1	Protein Homology	CDS	39386	40246	.	-	0	ID=cds-WP_080095202.1;Parent=gene-C9E96_RS15910;Dbxref=GenBank:WP_080095202.1;Name=WP_080095202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462679.1;locus_tag=C9E96_RS15910;product=class II aldolase;protein_id=WP_080095202.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	40309	41793	.	-	.	ID=gene-C9E96_RS15915;Name=C9E96_RS15915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15915;old_locus_tag=C9E96_16310
NZ_PYJX01000167.1	Protein Homology	CDS	40309	41793	.	-	0	ID=cds-WP_001113558.1;Parent=gene-C9E96_RS15915;Dbxref=GenBank:WP_001113558.1;Name=WP_001113558.1;Ontology_term=GO:0005975,GO:0016310,GO:0005524,GO:0019200;gbkey=CDS;go_function=ATP binding|0005524||IEA,carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462680.1;locus_tag=C9E96_RS15915;product=FGGY-family carbohydrate kinase;protein_id=WP_001113558.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	41786	43144	.	-	.	ID=gene-C9E96_RS15920;Name=C9E96_RS15920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15920;old_locus_tag=C9E96_16315
NZ_PYJX01000167.1	Protein Homology	CDS	41786	43144	.	-	0	ID=cds-WP_000997824.1;Parent=gene-C9E96_RS15920;Dbxref=GenBank:WP_000997824.1;Name=WP_000997824.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462681.1;locus_tag=C9E96_RS15920;product=PTS galactitol transporter subunit IIC;protein_id=WP_000997824.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	43220	43507	.	-	.	ID=gene-C9E96_RS15925;Name=C9E96_RS15925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15925;old_locus_tag=C9E96_16320
NZ_PYJX01000167.1	Protein Homology	CDS	43220	43507	.	-	0	ID=cds-WP_000041396.1;Parent=gene-C9E96_RS15925;Dbxref=GenBank:WP_000041396.1;Name=WP_000041396.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462682.1;locus_tag=C9E96_RS15925;product=PTS sugar transporter subunit IIB;protein_id=WP_000041396.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	43504	43977	.	-	.	ID=gene-C9E96_RS15930;Name=C9E96_RS15930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15930;old_locus_tag=C9E96_16325
NZ_PYJX01000167.1	Protein Homology	CDS	43504	43977	.	-	0	ID=cds-WP_001152237.1;Parent=gene-C9E96_RS15930;Dbxref=GenBank:WP_001152237.1;Name=WP_001152237.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462683.1;locus_tag=C9E96_RS15930;product=PTS sugar transporter subunit IIA;protein_id=WP_001152237.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	43995	44738	.	-	.	ID=gene-C9E96_RS15935;Name=C9E96_RS15935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15935;old_locus_tag=C9E96_16330
NZ_PYJX01000167.1	Protein Homology	CDS	43995	44738	.	-	0	ID=cds-WP_000854956.1;Parent=gene-C9E96_RS15935;Dbxref=GenBank:WP_000854956.1;Name=WP_000854956.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462684.1;locus_tag=C9E96_RS15935;product=GntR family transcriptional regulator;protein_id=WP_000854956.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	45091	45543	.	-	.	ID=gene-C9E96_RS15940;Name=C9E96_RS15940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15940;old_locus_tag=C9E96_16335
NZ_PYJX01000167.1	Protein Homology	CDS	45091	45543	.	-	0	ID=cds-WP_001519640.1;Parent=gene-C9E96_RS15940;Dbxref=GenBank:WP_001519640.1;Name=WP_001519640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462685.1;locus_tag=C9E96_RS15940;product=DUF1198 domain-containing protein;protein_id=WP_001519640.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	45736	47127	.	-	.	ID=gene-C9E96_RS15945;Name=uhpT;gbkey=Gene;gene=uhpT;gene_biotype=protein_coding;locus_tag=C9E96_RS15945;old_locus_tag=C9E96_16340
NZ_PYJX01000167.1	Protein Homology	CDS	45736	47127	.	-	0	ID=cds-WP_000879181.1;Parent=gene-C9E96_RS15945;Dbxref=GenBank:WP_000879181.1;Name=WP_000879181.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=uhpT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462686.1;locus_tag=C9E96_RS15945;product=hexose-6-phosphate:phosphate antiporter;protein_id=WP_000879181.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	47270	48598	.	-	.	ID=gene-C9E96_RS15950;Name=C9E96_RS15950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15950;old_locus_tag=C9E96_16345
NZ_PYJX01000167.1	Protein Homology	CDS	47270	48598	.	-	0	ID=cds-WP_000948164.1;Parent=gene-C9E96_RS15950;Dbxref=GenBank:WP_000948164.1;Name=WP_000948164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462687.1;locus_tag=C9E96_RS15950;product=MFS transporter;protein_id=WP_000948164.1;transl_table=11
NZ_PYJX01000167.1	RefSeq	gene	48608	50110	.	-	.	ID=gene-C9E96_RS15955;Name=uhpB;gbkey=Gene;gene=uhpB;gene_biotype=protein_coding;locus_tag=C9E96_RS15955;old_locus_tag=C9E96_16350
NZ_PYJX01000167.1	Protein Homology	CDS	48608	50110	.	-	0	ID=cds-WP_080203807.1;Parent=gene-C9E96_RS15955;Dbxref=GenBank:WP_080203807.1;Name=WP_080203807.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=uhpB;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462688.1;locus_tag=C9E96_RS15955;product=signal transduction histidine-protein kinase/phosphatase UhpB;protein_id=WP_080203807.1;transl_table=11
##sequence-region NZ_PYJX01000015.1 1 3565
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000015.1	RefSeq	region	1	3565	.	+	.	ID=NZ_PYJX01000015.1:1..3565;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000015.1	RefSeq	gene	1	437	.	+	.	ID=gene-C9E96_RS00955;Name=dedD;gbkey=Gene;gene=dedD;gene_biotype=protein_coding;locus_tag=C9E96_RS00955;old_locus_tag=C9E96_00985;partial=true;start_range=.,1
NZ_PYJX01000015.1	Protein Homology	CDS	1	437	.	+	2	ID=cds-WP_135493733.1;Parent=gene-C9E96_RS00955;Dbxref=GenBank:WP_135493733.1;Name=WP_135493733.1;Ontology_term=GO:0032506,GO:0042834,GO:0030428;gbkey=CDS;gene=dedD;go_component=cell septum|0030428||IEA;go_function=peptidoglycan binding|0042834||IEA;go_process=cytokinetic process|0032506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461306.1;locus_tag=C9E96_RS00955;partial=true;product=cell division protein DedD;protein_id=WP_135493733.1;start_range=.,1;transl_table=11
NZ_PYJX01000015.1	RefSeq	gene	748	1236	.	+	.	ID=gene-C9E96_RS00960;Name=cvpA;gbkey=Gene;gene=cvpA;gene_biotype=protein_coding;locus_tag=C9E96_RS00960;old_locus_tag=C9E96_00990
NZ_PYJX01000015.1	Protein Homology	CDS	748	1236	.	+	0	ID=cds-WP_000262102.1;Parent=gene-C9E96_RS00960;Dbxref=GenBank:WP_000262102.1;Name=WP_000262102.1;gbkey=CDS;gene=cvpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461305.1;locus_tag=C9E96_RS00960;product=colicin V production protein;protein_id=WP_000262102.1;transl_table=11
NZ_PYJX01000015.1	RefSeq	gene	1274	2791	.	+	.	ID=gene-C9E96_RS00965;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=C9E96_RS00965;old_locus_tag=C9E96_00995
NZ_PYJX01000015.1	Protein Homology	CDS	1274	2791	.	+	0	ID=cds-WP_000334205.1;Parent=gene-C9E96_RS00965;Dbxref=GenBank:WP_000334205.1;Name=WP_000334205.1;Ontology_term=GO:0009113,GO:0004044;gbkey=CDS;gene=purF;go_function=amidophosphoribosyltransferase activity|0004044||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006820991.1;locus_tag=C9E96_RS00965;product=amidophosphoribosyltransferase;protein_id=WP_000334205.1;transl_table=11
NZ_PYJX01000015.1	RefSeq	gene	2827	3565	.	-	.	ID=gene-C9E96_RS00970;Name=C9E96_RS00970;end_range=3565,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00970;old_locus_tag=C9E96_01000;partial=true
NZ_PYJX01000015.1	Protein Homology	CDS	2827	3565	.	-	1	ID=cds-WP_167852876.1;Parent=gene-C9E96_RS00970;Dbxref=GenBank:WP_167852876.1;Name=WP_167852876.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;end_range=3565,.;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461303.1;locus_tag=C9E96_RS00970;partial=true;product=sigma 54-interacting transcriptional regulator;protein_id=WP_167852876.1;transl_table=11
##sequence-region NZ_PYJX01000163.1 1 3506
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000163.1	RefSeq	region	1	3506	.	+	.	ID=NZ_PYJX01000163.1:1..3506;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000163.1	RefSeq	pseudogene	1	142	.	-	.	ID=gene-C9E96_RS14915;Name=C9E96_RS14915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS14915;old_locus_tag=C9E96_15295;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000163.1	Protein Homology	CDS	1	142	.	-	0	ID=cds-C9E96_RS14915;Parent=gene-C9E96_RS14915;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461152.1;locus_tag=C9E96_RS14915;partial=true;product=MFS transporter;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000163.1	RefSeq	gene	511	1641	.	+	.	ID=gene-C9E96_RS14920;Name=fruB;gbkey=Gene;gene=fruB;gene_biotype=protein_coding;locus_tag=C9E96_RS14920;old_locus_tag=C9E96_15300
NZ_PYJX01000163.1	Protein Homology	CDS	511	1641	.	+	0	ID=cds-WP_000487287.1;Parent=gene-C9E96_RS14920;Dbxref=GenBank:WP_000487287.1;Name=WP_000487287.1;gbkey=CDS;gene=fruB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461151.1;locus_tag=C9E96_RS14920;product=fused PTS fructose transporter subunit IIA/HPr protein;protein_id=WP_000487287.1;transl_table=11
NZ_PYJX01000163.1	RefSeq	gene	1641	2579	.	+	.	ID=gene-C9E96_RS14925;Name=fruK;gbkey=Gene;gene=fruK;gene_biotype=protein_coding;locus_tag=C9E96_RS14925;old_locus_tag=C9E96_15305
NZ_PYJX01000163.1	Protein Homology	CDS	1641	2579	.	+	0	ID=cds-WP_000091249.1;Parent=gene-C9E96_RS14925;Dbxref=GenBank:WP_000091249.1;Name=WP_000091249.1;Ontology_term=GO:0008662,GO:0016773;gbkey=CDS;gene=fruK;go_function=1-phosphofructokinase activity|0008662||IEA,phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461150.1;locus_tag=C9E96_RS14925;product=1-phosphofructokinase;protein_id=WP_000091249.1;transl_table=11
NZ_PYJX01000163.1	RefSeq	gene	2596	3506	.	+	.	ID=gene-C9E96_RS14930;Name=C9E96_RS14930;end_range=3506,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14930;old_locus_tag=C9E96_15310;partial=true
NZ_PYJX01000163.1	Protein Homology	CDS	2596	3506	.	+	0	ID=cds-WP_245306431.1;Parent=gene-C9E96_RS14930;Dbxref=GenBank:WP_245306431.1;Name=WP_245306431.1;Ontology_term=GO:0009401,GO:0022877;end_range=3506,.;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461149.1;locus_tag=C9E96_RS14930;partial=true;product=fructose PTS transporter subunit IIB;protein_id=WP_245306431.1;transl_table=11
##sequence-region NZ_PYJX01000089.1 1 3428
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000089.1	RefSeq	region	1	3428	.	+	.	ID=NZ_PYJX01000089.1:1..3428;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000089.1	RefSeq	gene	209	2353	.	+	.	ID=gene-C9E96_RS07975;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;locus_tag=C9E96_RS07975;old_locus_tag=C9E96_08170
NZ_PYJX01000089.1	Protein Homology	CDS	209	2353	.	+	0	ID=cds-WP_001218637.1;Parent=gene-C9E96_RS07975;Dbxref=GenBank:WP_001218637.1;Name=WP_001218637.1;Ontology_term=GO:0006139,GO:0003677,GO:0003678,GO:0005524,GO:0016818;gbkey=CDS;gene=dinG;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459799.1;locus_tag=C9E96_RS07975;product=ATP-dependent DNA helicase DinG;protein_id=WP_001218637.1;transl_table=11
NZ_PYJX01000089.1	RefSeq	gene	2383	3354	.	+	.	ID=gene-C9E96_RS07980;Name=ybiB;gbkey=Gene;gene=ybiB;gene_biotype=protein_coding;locus_tag=C9E96_RS07980;old_locus_tag=C9E96_08175
NZ_PYJX01000089.1	Protein Homology	CDS	2383	3354	.	+	0	ID=cds-WP_023994028.1;Parent=gene-C9E96_RS07980;Dbxref=GenBank:WP_023994028.1;Name=WP_023994028.1;gbkey=CDS;gene=ybiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459800.1;locus_tag=C9E96_RS07980;product=DNA-binding protein YbiB;protein_id=WP_023994028.1;transl_table=11
##sequence-region NZ_PYJX01000241.1 1 3136
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000241.1	RefSeq	region	1	3136	.	+	.	ID=NZ_PYJX01000241.1:1..3136;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000241.1	RefSeq	pseudogene	1	141	.	-	.	ID=gene-C9E96_RS22845;Name=C9E96_RS22845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS22845;old_locus_tag=C9E96_23425;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000241.1	Protein Homology	CDS	1	141	.	-	0	ID=cds-C9E96_RS22845;Parent=gene-C9E96_RS22845;Note=capsular polysaccharide biosynthesis protein%3B catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461049.1;locus_tag=C9E96_RS22845;partial=true;product=phosphomannomutase CpsG;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000241.1	RefSeq	gene	252	1694	.	-	.	ID=gene-C9E96_RS22850;Name=cpsB;gbkey=Gene;gene=cpsB;gene_biotype=protein_coding;locus_tag=C9E96_RS22850;old_locus_tag=C9E96_23430
NZ_PYJX01000241.1	Protein Homology	CDS	252	1694	.	-	0	ID=cds-WP_135369824.1;Parent=gene-C9E96_RS22850;Dbxref=GenBank:WP_135369824.1;Name=WP_135369824.1;Ontology_term=GO:0000271,GO:0016779;gbkey=CDS;gene=cpsB;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461050.3;locus_tag=C9E96_RS22850;product=mannose-1-phosphate guanyltransferase;protein_id=WP_135369824.1;transl_table=11
NZ_PYJX01000241.1	RefSeq	gene	1691	2914	.	-	.	ID=gene-C9E96_RS22855;Name=wcaI;gbkey=Gene;gene=wcaI;gene_biotype=protein_coding;locus_tag=C9E96_RS22855;old_locus_tag=C9E96_23435
NZ_PYJX01000241.1	Protein Homology	CDS	1691	2914	.	-	0	ID=cds-WP_023993374.1;Parent=gene-C9E96_RS22855;Dbxref=GenBank:WP_023993374.1;Name=WP_023993374.1;gbkey=CDS;gene=wcaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461051.1;locus_tag=C9E96_RS22855;product=colanic acid biosynthesis fucosyltransferase WcaI;protein_id=WP_023993374.1;transl_table=11
NZ_PYJX01000241.1	RefSeq	pseudogene	2911	3136	.	-	.	ID=gene-C9E96_RS22860;Name=C9E96_RS22860;end_range=3136,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS22860;old_locus_tag=C9E96_23440;partial=true;pseudo=true
NZ_PYJX01000241.1	Protein Homology	CDS	2911	3136	.	-	1	ID=cds-C9E96_RS22860;Parent=gene-C9E96_RS22860;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=3136,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001526160.1;locus_tag=C9E96_RS22860;partial=true;product=GDP-mannose mannosyl hydrolase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000140.1 1 2853
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000140.1	RefSeq	region	1	2853	.	+	.	ID=NZ_PYJX01000140.1:1..2853;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000140.1	RefSeq	pseudogene	1	76	.	-	.	ID=gene-C9E96_RS24240;Name=C9E96_RS24240;end_range=76,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24240;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000140.1	Protein Homology	CDS	1	76	.	-	0	ID=cds-C9E96_RS24240;Parent=gene-C9E96_RS24240;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=76,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017383977.1;locus_tag=C9E96_RS24240;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000140.1	RefSeq	pseudogene	153	1739	.	-	.	ID=gene-C9E96_RS12235;Name=mdsB;gbkey=Gene;gene=mdsB;gene_biotype=pseudogene;locus_tag=C9E96_RS12235;old_locus_tag=C9E96_12540;partial=true;pseudo=true;start_range=.,153
NZ_PYJX01000140.1	Protein Homology	CDS	153	1739	.	-	0	ID=cds-C9E96_RS12235;Parent=gene-C9E96_RS12235;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;gene=mdsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459346.1;locus_tag=C9E96_RS12235;partial=true;product=multidrug efflux RND transporter permease subunit MdsB;pseudo=true;start_range=.,153;transl_table=11
NZ_PYJX01000140.1	RefSeq	gene	1736	2853	.	-	.	ID=gene-C9E96_RS12240;Name=mdsA;end_range=2853,.;gbkey=Gene;gene=mdsA;gene_biotype=protein_coding;locus_tag=C9E96_RS12240;old_locus_tag=C9E96_12545;partial=true
NZ_PYJX01000140.1	Protein Homology	CDS	1736	2853	.	-	2	ID=cds-WP_135494245.1;Parent=gene-C9E96_RS12240;Dbxref=GenBank:WP_135494245.1;Name=WP_135494245.1;end_range=2853,.;gbkey=CDS;gene=mdsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459347.3;locus_tag=C9E96_RS12240;partial=true;product=multidrug efflux RND transporter periplasmic adaptor subunit MdsA;protein_id=WP_135494245.1;transl_table=11
##sequence-region NZ_PYJX01000209.1 1 2844
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000209.1	RefSeq	region	1	2844	.	+	.	ID=NZ_PYJX01000209.1:1..2844;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000209.1	RefSeq	pseudogene	1	77	.	+	.	ID=gene-C9E96_RS24325;Name=C9E96_RS24325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24325;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000209.1	Protein Homology	CDS	1	77	.	+	2	ID=cds-C9E96_RS24325;Parent=gene-C9E96_RS24325;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461190.1;locus_tag=C9E96_RS24325;partial=true;product=heme lyase subunit;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000209.1	RefSeq	gene	121	768	.	-	.	ID=gene-C9E96_RS20920;Name=narP;gbkey=Gene;gene=narP;gene_biotype=protein_coding;locus_tag=C9E96_RS20920;old_locus_tag=C9E96_21445
NZ_PYJX01000209.1	Protein Homology	CDS	121	768	.	-	0	ID=cds-WP_001115498.1;Parent=gene-C9E96_RS20920;Dbxref=GenBank:WP_001115498.1;Name=WP_001115498.1;gbkey=CDS;gene=narP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461189.1;locus_tag=C9E96_RS20920;product=nitrate/nitrite response regulator protein NarP;protein_id=WP_001115498.1;transl_table=11
NZ_PYJX01000209.1	RefSeq	gene	1498	2061	.	+	.	ID=gene-C9E96_RS20930;Name=pagL;gbkey=Gene;gene=pagL;gene_biotype=protein_coding;locus_tag=C9E96_RS20930;old_locus_tag=C9E96_21455
NZ_PYJX01000209.1	Protein Homology	CDS	1498	2061	.	+	0	ID=cds-WP_000281877.1;Parent=gene-C9E96_RS20930;Dbxref=GenBank:WP_000281877.1;Name=WP_000281877.1;gbkey=CDS;gene=pagL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461188.1;locus_tag=C9E96_RS20930;product=lipid A 3-O-deacylase PagL;protein_id=WP_000281877.1;transl_table=11
NZ_PYJX01000209.1	RefSeq	gene	2253	2456	.	-	.	ID=gene-C9E96_RS20935;Name=C9E96_RS20935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20935;old_locus_tag=C9E96_21460
NZ_PYJX01000209.1	Protein Homology	CDS	2253	2456	.	-	0	ID=cds-WP_001653202.1;Parent=gene-C9E96_RS20935;Dbxref=GenBank:WP_001653202.1;Name=WP_001653202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461187.1;locus_tag=C9E96_RS20935;product=virulence protein MsgA;protein_id=WP_001653202.1;transl_table=11
NZ_PYJX01000209.1	RefSeq	gene	2759	2844	.	+	.	ID=gene-C9E96_RS20940;Name=C9E96_RS20940;end_range=2844,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20940;old_locus_tag=C9E96_21465;partial=true
NZ_PYJX01000209.1	Protein Homology	CDS	2759	2844	.	+	0	ID=cds-WP_176206727.1;Parent=gene-C9E96_RS20940;Dbxref=GenBank:WP_176206727.1;Name=WP_176206727.1;Ontology_term=GO:0019062,GO:0046718;end_range=2844,.;gbkey=CDS;go_process=virion attachment to host cell|0019062||IEA,symbiont entry into host cell|0046718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461186.1;locus_tag=C9E96_RS20940;partial=true;product=tail fiber protein;protein_id=WP_176206727.1;transl_table=11
##sequence-region NZ_PYJX01000187.1 1 2790
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000187.1	RefSeq	region	1	2790	.	+	.	ID=NZ_PYJX01000187.1:1..2790;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000187.1	RefSeq	pseudogene	1	427	.	+	.	ID=gene-C9E96_RS17715;Name=C9E96_RS17715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS17715;old_locus_tag=C9E96_18195;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000187.1	Protein Homology	CDS	1	427	.	+	1	ID=cds-C9E96_RS17715;Parent=gene-C9E96_RS17715;Note=internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459214.1;locus_tag=C9E96_RS17715;partial=true;product=PDZ domain-containing protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000187.1	RefSeq	gene	580	1737	.	+	.	ID=gene-C9E96_RS17720;Name=cdaR;gbkey=Gene;gene=cdaR;gene_biotype=protein_coding;locus_tag=C9E96_RS17720;old_locus_tag=C9E96_18200
NZ_PYJX01000187.1	Protein Homology	CDS	580	1737	.	+	0	ID=cds-WP_000929420.1;Parent=gene-C9E96_RS17720;Dbxref=GenBank:WP_000929420.1;Name=WP_000929420.1;gbkey=CDS;gene=cdaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459215.1;locus_tag=C9E96_RS17720;product=DNA-binding transcriptional regulator CdaR;protein_id=WP_000929420.1;transl_table=11
NZ_PYJX01000187.1	RefSeq	gene	1825	2211	.	-	.	ID=gene-C9E96_RS17725;Name=C9E96_RS17725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17725;old_locus_tag=C9E96_18205
NZ_PYJX01000187.1	Protein Homology	CDS	1825	2211	.	-	0	ID=cds-WP_000272193.1;Parent=gene-C9E96_RS17725;Dbxref=GenBank:WP_000272193.1;Name=WP_000272193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000272186.1;locus_tag=C9E96_RS17725;product=DUF3461 family protein;protein_id=WP_000272193.1;transl_table=11
NZ_PYJX01000187.1	RefSeq	pseudogene	2458	2790	.	+	.	ID=gene-C9E96_RS17730;Name=C9E96_RS17730;end_range=2790,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS17730;old_locus_tag=C9E96_18210;partial=true;pseudo=true
NZ_PYJX01000187.1	Protein Homology	CDS	2458	2790	.	+	0	ID=cds-C9E96_RS17730;Parent=gene-C9E96_RS17730;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=2790,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459217.1;locus_tag=C9E96_RS17730;partial=true;product=MHS family MFS transporter;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000124.1 1 2769
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000124.1	RefSeq	region	1	2769	.	+	.	ID=NZ_PYJX01000124.1:1..2769;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000124.1	RefSeq	gene	1	393	.	-	.	ID=gene-C9E96_RS10685;Name=C9E96_RS10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10685;old_locus_tag=C9E96_10935;partial=true;start_range=.,1
NZ_PYJX01000124.1	Protein Homology	CDS	1	393	.	-	0	ID=cds-WP_135494184.1;Parent=gene-C9E96_RS10685;Dbxref=GenBank:WP_135494184.1;Name=WP_135494184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000046969.1;locus_tag=C9E96_RS10685;partial=true;product=guanylate kinase;protein_id=WP_135494184.1;start_range=.,1;transl_table=11
NZ_PYJX01000124.1	RefSeq	gene	650	2335	.	+	.	ID=gene-C9E96_RS10690;Name=ligB;gbkey=Gene;gene=ligB;gene_biotype=protein_coding;locus_tag=C9E96_RS10690;old_locus_tag=C9E96_10940
NZ_PYJX01000124.1	Protein Homology	CDS	650	2335	.	+	0	ID=cds-WP_080203801.1;Parent=gene-C9E96_RS10690;Dbxref=GenBank:WP_080203801.1;Name=WP_080203801.1;Ontology_term=GO:0006260,GO:0006281,GO:0003911;gbkey=CDS;gene=ligB;go_function=DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462639.1;locus_tag=C9E96_RS10690;product=NAD-dependent DNA ligase LigB;protein_id=WP_080203801.1;transl_table=11
NZ_PYJX01000124.1	RefSeq	gene	2332	2769	.	-	.	ID=gene-C9E96_RS10695;Name=C9E96_RS10695;end_range=2769,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10695;old_locus_tag=C9E96_10945;partial=true
NZ_PYJX01000124.1	Protein Homology	CDS	2332	2769	.	-	0	ID=cds-WP_135494186.1;Parent=gene-C9E96_RS10695;Dbxref=GenBank:WP_135494186.1;Name=WP_135494186.1;Ontology_term=GO:0016020;end_range=2769,.;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462638.1;locus_tag=C9E96_RS10695;partial=true;product=trimeric intracellular cation channel family protein;protein_id=WP_135494186.1;transl_table=11
##sequence-region NZ_PYJX01000119.1 1 2767
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000119.1	RefSeq	region	1	2767	.	+	.	ID=NZ_PYJX01000119.1:1..2767;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000119.1	RefSeq	pseudogene	25	2767	.	-	.	ID=gene-C9E96_RS10130;Name=C9E96_RS10130;end_range=2767,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS10130;old_locus_tag=C9E96_10350;partial=true;pseudo=true;start_range=.,25
NZ_PYJX01000119.1	Protein Homology	CDS	25	2767	.	-	1	ID=cds-C9E96_RS10130;Parent=gene-C9E96_RS10130;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2767,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001237670.1;locus_tag=C9E96_RS10130;partial=true;product=Ig-like domain-containing protein;pseudo=true;start_range=.,25;transl_table=11
##sequence-region NZ_PYJX01000150.1 1 2647
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000150.1	RefSeq	region	1	2647	.	+	.	ID=NZ_PYJX01000150.1:1..2647;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000150.1	RefSeq	pseudogene	1	621	.	+	.	ID=gene-C9E96_RS13320;Name=pduW;gbkey=Gene;gene=pduW;gene_biotype=pseudogene;locus_tag=C9E96_RS13320;old_locus_tag=C9E96_13635;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000150.1	Protein Homology	CDS	1	621	.	+	0	ID=cds-C9E96_RS13320;Parent=gene-C9E96_RS13320;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=pduW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461002.1;locus_tag=C9E96_RS13320;partial=true;product=propanediol utilization propionate kinase PduW;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000150.1	RefSeq	gene	715	1581	.	+	.	ID=gene-C9E96_RS13325;Name=pduX;gbkey=Gene;gene=pduX;gene_biotype=protein_coding;locus_tag=C9E96_RS13325;old_locus_tag=C9E96_13640
NZ_PYJX01000150.1	Protein Homology	CDS	715	1581	.	+	0	ID=cds-WP_135369830.1;Parent=gene-C9E96_RS13325;Dbxref=GenBank:WP_135369830.1;Name=WP_135369830.1;gbkey=CDS;gene=pduX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632997.1;locus_tag=C9E96_RS13325;product=L-threonine kinase PduX;protein_id=WP_135369830.1;transl_table=11
NZ_PYJX01000150.1	RefSeq	gene	1615	1950	.	-	.	ID=gene-C9E96_RS13330;Name=C9E96_RS13330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13330;old_locus_tag=C9E96_13645
NZ_PYJX01000150.1	Protein Homology	CDS	1615	1950	.	-	0	ID=cds-WP_000450405.1;Parent=gene-C9E96_RS13330;Dbxref=GenBank:WP_000450405.1;Name=WP_000450405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461004.1;locus_tag=C9E96_RS13330;product=DUF496 family protein;protein_id=WP_000450405.1;transl_table=11
NZ_PYJX01000150.1	RefSeq	pseudogene	2195	2587	.	-	.	ID=gene-C9E96_RS13335;Name=C9E96_RS13335;end_range=2587,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13335;old_locus_tag=C9E96_13650;partial=true;pseudo=true
NZ_PYJX01000150.1	Protein Homology	CDS	2195	2587	.	-	0	ID=cds-C9E96_RS13335;Parent=gene-C9E96_RS13335;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2587,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461005.1;locus_tag=C9E96_RS13335;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000003.1 1 49998
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000003.1	RefSeq	region	1	49998	.	+	.	ID=NZ_PYJX01000003.1:1..49998;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000003.1	RefSeq	gene	1	396	.	+	.	ID=gene-C9E96_RS00025;Name=C9E96_RS00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00025;old_locus_tag=C9E96_00025;partial=true;start_range=.,1
NZ_PYJX01000003.1	Protein Homology	CDS	1	396	.	+	0	ID=cds-WP_135493691.1;Parent=gene-C9E96_RS00025;Dbxref=GenBank:WP_135493691.1;Name=WP_135493691.1;Ontology_term=GO:0098004;gbkey=CDS;go_process=virus tail fiber assembly|0098004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461522.1;locus_tag=C9E96_RS00025;partial=true;product=tail fiber assembly protein;protein_id=WP_135493691.1;start_range=.,1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	493	693	.	-	.	ID=gene-C9E96_RS00030;Name=pagK;gbkey=Gene;gene=pagK;gene_biotype=protein_coding;gene_synonym=pagK1;locus_tag=C9E96_RS00030;old_locus_tag=C9E96_00030
NZ_PYJX01000003.1	Protein Homology	CDS	493	693	.	-	0	ID=cds-WP_010989029.1;Parent=gene-C9E96_RS00030;Dbxref=GenBank:WP_010989029.1;Name=WP_010989029.1;gbkey=CDS;gene=pagK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460822.1;locus_tag=C9E96_RS00030;product=vesicle-borne virulence factor PagK;protein_id=WP_010989029.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	pseudogene	1071	1272	.	-	.	ID=gene-C9E96_RS24110;Name=C9E96_RS24110;end_range=1272,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24110;partial=true;pseudo=true;start_range=.,1071
NZ_PYJX01000003.1	Protein Homology	CDS	1071	1272	.	-	0	ID=cds-C9E96_RS24110;Parent=gene-C9E96_RS24110;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1272,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612087.1;locus_tag=C9E96_RS24110;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,1071;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	1263	1388	.	+	.	ID=gene-C9E96_RS00040;Name=C9E96_RS00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00040;old_locus_tag=C9E96_00040
NZ_PYJX01000003.1	Protein Homology	CDS	1263	1388	.	+	0	ID=cds-WP_000457876.1;Parent=gene-C9E96_RS00040;Dbxref=GenBank:WP_000457876.1;Name=WP_000457876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000457876.1;locus_tag=C9E96_RS00040;product=hypothetical protein;protein_id=WP_000457876.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	1902	2048	.	-	.	ID=gene-C9E96_RS24465;Name=C9E96_RS24465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24465
NZ_PYJX01000003.1	GeneMarkS-2+	CDS	1902	2048	.	-	0	ID=cds-WP_001520350.1;Parent=gene-C9E96_RS24465;Dbxref=GenBank:WP_001520350.1;Name=WP_001520350.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS24465;product=hypothetical protein;protein_id=WP_001520350.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	pseudogene	2063	2209	.	+	.	ID=gene-C9E96_RS24470;Name=C9E96_RS24470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24470;partial=true;pseudo=true;start_range=.,2063
NZ_PYJX01000003.1	Protein Homology	CDS	2063	2209	.	+	0	ID=cds-C9E96_RS24470;Parent=gene-C9E96_RS24470;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020219268.1;locus_tag=C9E96_RS24470;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,2063;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	2536	3150	.	-	.	ID=gene-C9E96_RS00055;Name=C9E96_RS00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00055;old_locus_tag=C9E96_00055
NZ_PYJX01000003.1	Protein Homology	CDS	2536	3150	.	-	0	ID=cds-WP_080204073.1;Parent=gene-C9E96_RS00055;Dbxref=GenBank:WP_080204073.1;Name=WP_080204073.1;Ontology_term=GO:0006457,GO:0015035,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460820.1;locus_tag=C9E96_RS00055;product=disulfide bond formation protein B;protein_id=WP_080204073.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	3160	3318	.	-	.	ID=gene-C9E96_RS00060;Name=C9E96_RS00060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00060;old_locus_tag=C9E96_00060
NZ_PYJX01000003.1	Protein Homology	CDS	3160	3318	.	-	0	ID=cds-WP_000480735.1;Parent=gene-C9E96_RS00060;Dbxref=GenBank:WP_000480735.1;Name=WP_000480735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460819.1;locus_tag=C9E96_RS00060;product=DUF5993 family protein;protein_id=WP_000480735.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	3451	4365	.	-	.	ID=gene-C9E96_RS00065;Name=C9E96_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00065;old_locus_tag=C9E96_00065
NZ_PYJX01000003.1	Protein Homology	CDS	3451	4365	.	-	0	ID=cds-WP_001233445.1;Parent=gene-C9E96_RS00065;Dbxref=GenBank:WP_001233445.1;Name=WP_001233445.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460818.1;locus_tag=C9E96_RS00065;product=DMT family transporter;protein_id=WP_001233445.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	pseudogene	5660	6082	.	-	.	ID=gene-C9E96_RS00080;Name=C9E96_RS00080;end_range=6082,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS00080;old_locus_tag=C9E96_00080;partial=true;pseudo=true
NZ_PYJX01000003.1	Protein Homology	CDS	5660	6082	.	-	0	ID=cds-C9E96_RS00080;Parent=gene-C9E96_RS00080;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;end_range=6082,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001189081.1;locus_tag=C9E96_RS00080;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	6152	7360	.	+	.	ID=gene-C9E96_RS00085;Name=C9E96_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00085;old_locus_tag=C9E96_00085
NZ_PYJX01000003.1	Protein Homology	CDS	6152	7360	.	+	0	ID=cds-WP_080204071.1;Parent=gene-C9E96_RS00085;Dbxref=GenBank:WP_080204071.1;Name=WP_080204071.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=C9E96_RS00085;product=IS256 family transposase;protein_id=WP_080204071.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	7506	7646	.	-	.	ID=gene-C9E96_RS00090;Name=C9E96_RS00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00090;old_locus_tag=C9E96_00090
NZ_PYJX01000003.1	Protein Homology	CDS	7506	7646	.	-	0	ID=cds-WP_001576018.1;Parent=gene-C9E96_RS00090;Dbxref=GenBank:WP_001576018.1;Name=WP_001576018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001576018.1;locus_tag=C9E96_RS00090;product=hypothetical protein;protein_id=WP_001576018.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	7812	8081	.	-	.	ID=gene-C9E96_RS00095;Name=C9E96_RS00095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00095;old_locus_tag=C9E96_00095
NZ_PYJX01000003.1	Protein Homology	CDS	7812	8081	.	-	0	ID=cds-WP_012664556.1;Parent=gene-C9E96_RS00095;Dbxref=GenBank:WP_012664556.1;Name=WP_012664556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460814.1;locus_tag=C9E96_RS00095;product=hypothetical protein;protein_id=WP_012664556.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	8454	8873	.	+	.	ID=gene-C9E96_RS00105;Name=C9E96_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00105;old_locus_tag=C9E96_00105
NZ_PYJX01000003.1	Protein Homology	CDS	8454	8873	.	+	0	ID=cds-WP_000354407.1;Parent=gene-C9E96_RS00105;Dbxref=GenBank:WP_000354407.1;Name=WP_000354407.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460813.1;locus_tag=C9E96_RS00105;product=GNAT family N-acetyltransferase;protein_id=WP_000354407.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	9260	9736	.	-	.	ID=gene-C9E96_RS00110;Name=C9E96_RS00110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00110;old_locus_tag=C9E96_00110
NZ_PYJX01000003.1	Protein Homology	CDS	9260	9736	.	-	0	ID=cds-WP_000030946.1;Parent=gene-C9E96_RS00110;Dbxref=GenBank:WP_000030946.1;Name=WP_000030946.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000030934.1;locus_tag=C9E96_RS00110;product=hypothetical protein;protein_id=WP_000030946.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	10066	10461	.	-	.	ID=gene-C9E96_RS00115;Name=C9E96_RS00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00115;old_locus_tag=C9E96_00115
NZ_PYJX01000003.1	Protein Homology	CDS	10066	10461	.	-	0	ID=cds-WP_000422890.1;Parent=gene-C9E96_RS00115;Dbxref=GenBank:WP_000422890.1;Name=WP_000422890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460812.1;locus_tag=C9E96_RS00115;product=DUF1398 domain-containing protein;protein_id=WP_000422890.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	11145	11867	.	+	.	ID=gene-C9E96_RS00120;Name=sopE2;gbkey=Gene;gene=sopE2;gene_biotype=protein_coding;locus_tag=C9E96_RS00120;old_locus_tag=C9E96_00120
NZ_PYJX01000003.1	Protein Homology	CDS	11145	11867	.	+	0	ID=cds-WP_023240423.1;Parent=gene-C9E96_RS00120;Dbxref=GenBank:WP_023240423.1;Name=WP_023240423.1;gbkey=CDS;gene=sopE2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460811.1;locus_tag=C9E96_RS00120;product=SPI-1 type III secretion system guanine nucleotide exchange factor SopE2;protein_id=WP_023240423.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	12152	12316	.	+	.	ID=gene-C9E96_RS00125;Name=C9E96_RS00125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00125;old_locus_tag=C9E96_00125
NZ_PYJX01000003.1	Protein Homology	CDS	12152	12316	.	+	0	ID=cds-WP_001134856.1;Parent=gene-C9E96_RS00125;Dbxref=GenBank:WP_001134856.1;Name=WP_001134856.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460810.1;locus_tag=C9E96_RS00125;product=membrane protein;protein_id=WP_001134856.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	12307	12522	.	+	.	ID=gene-C9E96_RS24405;Name=C9E96_RS24405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24405
NZ_PYJX01000003.1	Protein Homology	CDS	12307	12522	.	+	0	ID=cds-WP_001574231.1;Parent=gene-C9E96_RS24405;Dbxref=GenBank:WP_001574231.1;Name=WP_001574231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001529227.1;locus_tag=C9E96_RS24405;product=hypothetical protein;protein_id=WP_001574231.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	12540	13190	.	+	.	ID=gene-C9E96_RS00130;Name=pphA;gbkey=Gene;gene=pphA;gene_biotype=protein_coding;locus_tag=C9E96_RS00130;old_locus_tag=C9E96_00130
NZ_PYJX01000003.1	Protein Homology	CDS	12540	13190	.	+	0	ID=cds-WP_000986176.1;Parent=gene-C9E96_RS00130;Dbxref=GenBank:WP_000986176.1;Name=WP_000986176.1;Ontology_term=GO:0016787;gbkey=CDS;gene=pphA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460809.1;locus_tag=C9E96_RS00130;product=protein-serine/threonine phosphatase;protein_id=WP_000986176.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	13209	13400	.	-	.	ID=gene-C9E96_RS00135;Name=C9E96_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00135;old_locus_tag=C9E96_00135
NZ_PYJX01000003.1	Protein Homology	CDS	13209	13400	.	-	0	ID=cds-WP_000457838.1;Parent=gene-C9E96_RS00135;Dbxref=GenBank:WP_000457838.1;Name=WP_000457838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460808.1;locus_tag=C9E96_RS00135;product=YebW family protein;protein_id=WP_000457838.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	13511	13747	.	-	.	ID=gene-C9E96_RS00140;Name=C9E96_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00140;old_locus_tag=C9E96_00140
NZ_PYJX01000003.1	Protein Homology	CDS	13511	13747	.	-	0	ID=cds-WP_024131167.1;Parent=gene-C9E96_RS00140;Dbxref=GenBank:WP_024131167.1;Name=WP_024131167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707284.2;locus_tag=C9E96_RS00140;product=YebV family protein;protein_id=WP_024131167.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	13865	15304	.	-	.	ID=gene-C9E96_RS00145;Name=rsmF;gbkey=Gene;gene=rsmF;gene_biotype=protein_coding;locus_tag=C9E96_RS00145;old_locus_tag=C9E96_00145
NZ_PYJX01000003.1	Protein Homology	CDS	13865	15304	.	-	0	ID=cds-WP_135493693.1;Parent=gene-C9E96_RS00145;Dbxref=GenBank:WP_135493693.1;Name=WP_135493693.1;Ontology_term=GO:0001510,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmF;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460806.1;locus_tag=C9E96_RS00145;product=16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF;protein_id=WP_135493693.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	15382	18015	.	-	.	ID=gene-C9E96_RS00150;Name=C9E96_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00150;old_locus_tag=C9E96_00150
NZ_PYJX01000003.1	Protein Homology	CDS	15382	18015	.	-	0	ID=cds-WP_001521100.1;Parent=gene-C9E96_RS00150;Dbxref=GenBank:WP_001521100.1;Name=WP_001521100.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416348.2;locus_tag=C9E96_RS00150;product=PqiB family protein;protein_id=WP_001521100.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	17984	19267	.	-	.	ID=gene-C9E96_RS00155;Name=yebS;gbkey=Gene;gene=yebS;gene_biotype=protein_coding;locus_tag=C9E96_RS00155;old_locus_tag=C9E96_00155
NZ_PYJX01000003.1	Protein Homology	CDS	17984	19267	.	-	0	ID=cds-WP_001207293.1;Parent=gene-C9E96_RS00155;Dbxref=GenBank:WP_001207293.1;Name=WP_001207293.1;gbkey=CDS;gene=yebS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460804.1;locus_tag=C9E96_RS00155;product=membrane integrity lipid transport subunit YebS;protein_id=WP_001207293.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	19396	19893	.	+	.	ID=gene-C9E96_RS00160;Name=C9E96_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00160;old_locus_tag=C9E96_00160
NZ_PYJX01000003.1	Protein Homology	CDS	19396	19893	.	+	0	ID=cds-WP_001518229.1;Parent=gene-C9E96_RS00160;Dbxref=GenBank:WP_001518229.1;Name=WP_001518229.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707287.1;locus_tag=C9E96_RS00160;product=GAF domain-containing protein;protein_id=WP_001518229.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	19991	20677	.	+	.	ID=gene-C9E96_RS00165;Name=proQ;gbkey=Gene;gene=proQ;gene_biotype=protein_coding;locus_tag=C9E96_RS00165;old_locus_tag=C9E96_00165
NZ_PYJX01000003.1	Protein Homology	CDS	19991	20677	.	+	0	ID=cds-WP_000431401.1;Parent=gene-C9E96_RS00165;Dbxref=GenBank:WP_000431401.1;Name=WP_000431401.1;Ontology_term=GO:0010608,GO:0003723,GO:0033592,GO:0034057;gbkey=CDS;gene=proQ;go_function=RNA binding|0003723||IEA,RNA strand annealing activity|0033592||IEA,RNA strand-exchange activity|0034057||IEA;go_process=post-transcriptional regulation of gene expression|0010608||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460802.1;locus_tag=C9E96_RS00165;product=RNA chaperone ProQ;protein_id=WP_000431401.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	20697	22745	.	+	.	ID=gene-C9E96_RS00170;Name=prc;gbkey=Gene;gene=prc;gene_biotype=protein_coding;locus_tag=C9E96_RS00170;old_locus_tag=C9E96_00170
NZ_PYJX01000003.1	Protein Homology	CDS	20697	22745	.	+	0	ID=cds-WP_001091237.1;Parent=gene-C9E96_RS00170;Dbxref=GenBank:WP_001091237.1;Name=WP_001091237.1;Ontology_term=GO:0006508,GO:0005515,GO:0008236;gbkey=CDS;gene=prc;go_function=protein binding|0005515||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460801.1;locus_tag=C9E96_RS00170;product=carboxy terminal-processing peptidase;protein_id=WP_001091237.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	22939	23820	.	+	.	ID=gene-C9E96_RS00175;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=C9E96_RS00175;old_locus_tag=C9E96_00175
NZ_PYJX01000003.1	Protein Homology	CDS	22939	23820	.	+	0	ID=cds-WP_000984498.1;Parent=gene-C9E96_RS00175;Dbxref=GenBank:WP_000984498.1;Name=WP_000984498.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=htpX;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014229823.1;locus_tag=C9E96_RS00175;product=protease HtpX;protein_id=WP_000984498.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	23868	25241	.	-	.	ID=gene-C9E96_RS00180;Name=C9E96_RS00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00180;old_locus_tag=C9E96_00180
NZ_PYJX01000003.1	Protein Homology	CDS	23868	25241	.	-	0	ID=cds-WP_080204070.1;Parent=gene-C9E96_RS00180;Dbxref=GenBank:WP_080204070.1;Name=WP_080204070.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460799.1;locus_tag=C9E96_RS00180;product=MFS transporter;protein_id=WP_080204070.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	25417	26208	.	+	.	ID=gene-C9E96_RS00185;Name=kdgR;gbkey=Gene;gene=kdgR;gene_biotype=protein_coding;locus_tag=C9E96_RS00185;old_locus_tag=C9E96_00185
NZ_PYJX01000003.1	Protein Homology	CDS	25417	26208	.	+	0	ID=cds-WP_001262195.1;Parent=gene-C9E96_RS00185;Dbxref=GenBank:WP_001262195.1;Name=WP_001262195.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=kdgR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460798.1;locus_tag=C9E96_RS00185;product=DNA-binding transcriptional regulator KdgR;protein_id=WP_001262195.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	26420	26659	.	-	.	ID=gene-C9E96_RS00190;Name=yobH;gbkey=Gene;gene=yobH;gene_biotype=protein_coding;locus_tag=C9E96_RS00190;old_locus_tag=C9E96_00190
NZ_PYJX01000003.1	Protein Homology	CDS	26420	26659	.	-	0	ID=cds-WP_001236777.1;Parent=gene-C9E96_RS00190;Dbxref=GenBank:WP_001236777.1;Name=WP_001236777.1;gbkey=CDS;gene=yobH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460797.1;locus_tag=C9E96_RS00190;product=invasion protein YobH;protein_id=WP_001236777.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	26817	26960	.	+	.	ID=gene-C9E96_RS00195;Name=mgrB;gbkey=Gene;gene=mgrB;gene_biotype=protein_coding;locus_tag=C9E96_RS00195;old_locus_tag=C9E96_00195
NZ_PYJX01000003.1	Protein Homology	CDS	26817	26960	.	+	0	ID=cds-WP_000714547.1;Parent=gene-C9E96_RS00195;Dbxref=GenBank:WP_000714547.1;Name=WP_000714547.1;gbkey=CDS;gene=mgrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460796.1;locus_tag=C9E96_RS00195;product=PhoP/PhoQ regulator MgrB;protein_id=WP_000714547.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	27031	27318	.	+	.	ID=gene-C9E96_RS00200;Name=C9E96_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00200;old_locus_tag=C9E96_00200
NZ_PYJX01000003.1	Protein Homology	CDS	27031	27318	.	+	0	ID=cds-WP_001000660.1;Parent=gene-C9E96_RS00200;Dbxref=GenBank:WP_001000660.1;Name=WP_001000660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460795.1;locus_tag=C9E96_RS00200;product=YebO family protein;protein_id=WP_001000660.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	27967	28110	.	+	.	ID=gene-C9E96_RS00205;Name=C9E96_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00205;old_locus_tag=C9E96_00205
NZ_PYJX01000003.1	Protein Homology	CDS	27967	28110	.	+	0	ID=cds-WP_001537930.1;Parent=gene-C9E96_RS00205;Dbxref=GenBank:WP_001537930.1;Name=WP_001537930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460794.1;locus_tag=C9E96_RS00205;product=DUF2627 domain-containing protein;protein_id=WP_001537930.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	28123	28332	.	+	.	ID=gene-C9E96_RS00210;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=C9E96_RS00210;old_locus_tag=C9E96_00210
NZ_PYJX01000003.1	Protein Homology	CDS	28123	28332	.	+	0	ID=cds-WP_001062678.1;Parent=gene-C9E96_RS00210;Dbxref=GenBank:WP_001062678.1;Name=WP_001062678.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310560.1;locus_tag=C9E96_RS00210;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_001062678.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	28552	30297	.	+	.	ID=gene-C9E96_RS00215;Name=ftsI;gbkey=Gene;gene=ftsI;gene_biotype=protein_coding;locus_tag=C9E96_RS00215;old_locus_tag=C9E96_00215
NZ_PYJX01000003.1	Protein Homology	CDS	28552	30297	.	+	0	ID=cds-WP_000730322.1;Parent=gene-C9E96_RS00215;Dbxref=GenBank:WP_000730322.1;Name=WP_000730322.1;Ontology_term=GO:0009252,GO:0051301,GO:0008658,GO:0008955,GO:0005886;gbkey=CDS;gene=ftsI;go_component=plasma membrane|0005886||IEA;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460792.1;locus_tag=C9E96_RS00215;product=peptidoglycan glycosyltransferase FtsI;protein_id=WP_000730322.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	30363	31172	.	+	.	ID=gene-C9E96_RS00220;Name=rlmA;gbkey=Gene;gene=rlmA;gene_biotype=protein_coding;locus_tag=C9E96_RS00220;old_locus_tag=C9E96_00220
NZ_PYJX01000003.1	Protein Homology	CDS	30363	31172	.	+	0	ID=cds-WP_000010923.1;Parent=gene-C9E96_RS00220;Dbxref=GenBank:WP_000010923.1;Name=WP_000010923.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmA;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460791.1;locus_tag=C9E96_RS00220;product=23S rRNA (guanine(745)-N(1))-methyltransferase;protein_id=WP_000010923.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	31169	31735	.	-	.	ID=gene-C9E96_RS00225;Name=mntP;gbkey=Gene;gene=mntP;gene_biotype=protein_coding;locus_tag=C9E96_RS00225;old_locus_tag=C9E96_00225
NZ_PYJX01000003.1	Protein Homology	CDS	31169	31735	.	-	0	ID=cds-WP_001518359.1;Parent=gene-C9E96_RS00225;Dbxref=GenBank:WP_001518359.1;Name=WP_001518359.1;gbkey=CDS;gene=mntP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416335.4;locus_tag=C9E96_RS00225;product=manganese efflux pump MntP;protein_id=WP_001518359.1;transl_table=11
NZ_PYJX01000003.1	cmsearch	riboswitch	31847	31948	.	-	.	ID=id-NZ_PYJX01000003.1:31847..31948;Dbxref=RFAM:RF00080;Note=yybP-ykoY riboswitch is a manganese riboswitch that directly binds Mn;bound_moiety=manganese;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYJX01000003.1	RefSeq	gene	32145	32603	.	-	.	ID=gene-C9E96_RS00230;Name=C9E96_RS00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00230;old_locus_tag=C9E96_00235
NZ_PYJX01000003.1	Protein Homology	CDS	32145	32603	.	-	0	ID=cds-WP_000156280.1;Parent=gene-C9E96_RS00230;Dbxref=GenBank:WP_000156280.1;Name=WP_000156280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416334.1;locus_tag=C9E96_RS00230;product=DUF986 family protein;protein_id=WP_000156280.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	32662	33513	.	-	.	ID=gene-C9E96_RS00235;Name=C9E96_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00235;old_locus_tag=C9E96_00240
NZ_PYJX01000003.1	Protein Homology	CDS	32662	33513	.	-	0	ID=cds-WP_001518647.1;Parent=gene-C9E96_RS00235;Dbxref=GenBank:WP_001518647.1;Name=WP_001518647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000228151.1;locus_tag=C9E96_RS00235;product=PTS mannose transporter subunit IID;protein_id=WP_001518647.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	33526	34326	.	-	.	ID=gene-C9E96_RS00240;Name=manY;gbkey=Gene;gene=manY;gene_biotype=protein_coding;locus_tag=C9E96_RS00240;old_locus_tag=C9E96_00245
NZ_PYJX01000003.1	Protein Homology	CDS	33526	34326	.	-	0	ID=cds-WP_000406918.1;Parent=gene-C9E96_RS00240;Dbxref=GenBank:WP_000406918.1;Name=WP_000406918.1;gbkey=CDS;gene=manY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910918.1;locus_tag=C9E96_RS00240;product=PTS mannose transporter subunit IIC;protein_id=WP_000406918.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	34379	35347	.	-	.	ID=gene-C9E96_RS00245;Name=manX;gbkey=Gene;gene=manX;gene_biotype=protein_coding;locus_tag=C9E96_RS00245;old_locus_tag=C9E96_00250
NZ_PYJX01000003.1	Protein Homology	CDS	34379	35347	.	-	0	ID=cds-WP_135493695.1;Parent=gene-C9E96_RS00245;Dbxref=GenBank:WP_135493695.1;Name=WP_135493695.1;Ontology_term=GO:0009401,GO:0008982;gbkey=CDS;gene=manX;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460786.1;locus_tag=C9E96_RS00245;product=PTS mannose transporter subunit IIAB;protein_id=WP_135493695.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	35665	35832	.	+	.	ID=gene-C9E96_RS24475;Name=C9E96_RS24475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24475
NZ_PYJX01000003.1	Protein Homology	CDS	35665	35832	.	+	0	ID=cds-WP_370739650.1;Parent=gene-C9E96_RS24475;Dbxref=GenBank:WP_370739650.1;Name=WP_370739650.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF046943.2;locus_tag=C9E96_RS24475;product=protein YoaL;protein_id=WP_370739650.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	35820	37379	.	+	.	ID=gene-C9E96_RS00250;Name=yoaE;gbkey=Gene;gene=yoaE;gene_biotype=protein_coding;locus_tag=C9E96_RS00250;old_locus_tag=C9E96_00260
NZ_PYJX01000003.1	Protein Homology	CDS	35820	37379	.	+	0	ID=cds-WP_000421815.1;Parent=gene-C9E96_RS00250;Dbxref=GenBank:WP_000421815.1;Name=WP_000421815.1;gbkey=CDS;gene=yoaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460784.2;locus_tag=C9E96_RS00250;product=CNNM family cation transport protein YoaE;protein_id=WP_000421815.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	37401	39002	.	-	.	ID=gene-C9E96_RS00255;Name=C9E96_RS00255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00255;old_locus_tag=C9E96_00265
NZ_PYJX01000003.1	Protein Homology	CDS	37401	39002	.	-	0	ID=cds-WP_023206803.1;Parent=gene-C9E96_RS00255;Dbxref=GenBank:WP_023206803.1;Name=WP_023206803.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001192512.1;locus_tag=C9E96_RS00255;product=EAL domain-containing protein;protein_id=WP_023206803.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	39140	40504	.	-	.	ID=gene-C9E96_RS00260;Name=sdaA;gbkey=Gene;gene=sdaA;gene_biotype=protein_coding;locus_tag=C9E96_RS00260;old_locus_tag=C9E96_00270
NZ_PYJX01000003.1	Protein Homology	CDS	39140	40504	.	-	0	ID=cds-WP_000624276.1;Parent=gene-C9E96_RS00260;Dbxref=GenBank:WP_000624276.1;Name=WP_000624276.1;gbkey=CDS;gene=sdaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460782.1;locus_tag=C9E96_RS00260;product=L-serine ammonia-lyase;protein_id=WP_000624276.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	40768	41346	.	-	.	ID=gene-C9E96_RS00265;Name=C9E96_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00265;old_locus_tag=C9E96_00275
NZ_PYJX01000003.1	Protein Homology	CDS	40768	41346	.	-	0	ID=cds-WP_000381544.1;Parent=gene-C9E96_RS00265;Dbxref=GenBank:WP_000381544.1;Name=WP_000381544.1;Ontology_term=GO:0000287,GO:0010945;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,coenzyme A diphosphatase activity|0010945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460781.1;locus_tag=C9E96_RS00265;product=CoA pyrophosphatase;protein_id=WP_000381544.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	41350	42714	.	-	.	ID=gene-C9E96_RS00270;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=C9E96_RS00270;old_locus_tag=C9E96_00280
NZ_PYJX01000003.1	Protein Homology	CDS	41350	42714	.	-	0	ID=cds-WP_135369792.1;Parent=gene-C9E96_RS00270;Dbxref=GenBank:WP_135369792.1;Name=WP_135369792.1;Ontology_term=GO:0009396;gbkey=CDS;gene=pabB;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460780.1;locus_tag=C9E96_RS00270;product=aminodeoxychorismate synthase component 1;protein_id=WP_135369792.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	42795	42974	.	+	.	ID=gene-C9E96_RS00275;Name=C9E96_RS00275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00275;old_locus_tag=C9E96_00285
NZ_PYJX01000003.1	Protein Homology	CDS	42795	42974	.	+	0	ID=cds-WP_135369793.1;Parent=gene-C9E96_RS00275;Dbxref=GenBank:WP_135369793.1;Name=WP_135369793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460779.1;locus_tag=C9E96_RS00275;product=YoaH family protein;protein_id=WP_135369793.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	42980	43324	.	-	.	ID=gene-C9E96_RS00280;Name=C9E96_RS00280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00280;old_locus_tag=C9E96_00290
NZ_PYJX01000003.1	Protein Homology	CDS	42980	43324	.	-	0	ID=cds-WP_023219187.1;Parent=gene-C9E96_RS00280;Dbxref=GenBank:WP_023219187.1;Name=WP_023219187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460778.1;locus_tag=C9E96_RS00280;product=RidA family protein;protein_id=WP_023219187.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	43455	45365	.	+	.	ID=gene-C9E96_RS00285;Name=C9E96_RS00285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00285;old_locus_tag=C9E96_00295
NZ_PYJX01000003.1	Protein Homology	CDS	43455	45365	.	+	0	ID=cds-WP_000128807.1;Parent=gene-C9E96_RS00285;Dbxref=GenBank:WP_000128807.1;Name=WP_000128807.1;Ontology_term=GO:0003676,GO:0003677,GO:0004386,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460777.1;locus_tag=C9E96_RS00285;product=ATP-dependent DNA helicase;protein_id=WP_000128807.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	45423	46118	.	+	.	ID=gene-C9E96_RS00290;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=C9E96_RS00290;old_locus_tag=C9E96_00300
NZ_PYJX01000003.1	Protein Homology	CDS	45423	46118	.	+	0	ID=cds-WP_135493697.1;Parent=gene-C9E96_RS00290;Dbxref=GenBank:WP_135493697.1;Name=WP_135493697.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaB;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460776.1;locus_tag=C9E96_RS00290;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=WP_135493697.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	46190	46771	.	+	.	ID=gene-C9E96_RS00295;Name=C9E96_RS00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00295;old_locus_tag=C9E96_00305
NZ_PYJX01000003.1	Protein Homology	CDS	46190	46771	.	+	0	ID=cds-WP_000290594.1;Parent=gene-C9E96_RS00295;Dbxref=GenBank:WP_000290594.1;Name=WP_000290594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460775.1;locus_tag=C9E96_RS00295;product=Slp family lipoprotein;protein_id=WP_000290594.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	46976	48661	.	+	.	ID=gene-C9E96_RS00300;Name=fadD;gbkey=Gene;gene=fadD;gene_biotype=protein_coding;locus_tag=C9E96_RS00300;old_locus_tag=C9E96_00315
NZ_PYJX01000003.1	Protein Homology	CDS	46976	48661	.	+	0	ID=cds-WP_001532413.1;Parent=gene-C9E96_RS00300;Dbxref=GenBank:WP_001532413.1;Name=WP_001532413.1;gbkey=CDS;gene=fadD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460774.1;locus_tag=C9E96_RS00300;product=long-chain-fatty-acid--CoA ligase FadD;protein_id=WP_001532413.1;transl_table=11
NZ_PYJX01000003.1	RefSeq	gene	48734	49861	.	+	.	ID=gene-C9E96_RS00305;Name=rnd;gbkey=Gene;gene=rnd;gene_biotype=protein_coding;locus_tag=C9E96_RS00305;old_locus_tag=C9E96_00320
NZ_PYJX01000003.1	Protein Homology	CDS	48734	49861	.	+	0	ID=cds-WP_001109134.1;Parent=gene-C9E96_RS00305;Dbxref=GenBank:WP_001109134.1;Name=WP_001109134.1;Ontology_term=GO:0008033,GO:0003676,GO:0008408,GO:0033890;gbkey=CDS;gene=rnd;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA,ribonuclease D activity|0033890||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416318.1;locus_tag=C9E96_RS00305;product=ribonuclease D;protein_id=WP_001109134.1;transl_table=11
##sequence-region NZ_PYJX01000047.1 1 152601
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000047.1	RefSeq	region	1	152601	.	+	.	ID=NZ_PYJX01000047.1:1..152601;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000047.1	RefSeq	pseudogene	96	542	.	+	.	ID=gene-C9E96_RS03580;Name=C9E96_RS03580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS03580;old_locus_tag=C9E96_03635;partial=true;pseudo=true;start_range=.,96
NZ_PYJX01000047.1	Protein Homology	CDS	96	542	.	+	0	ID=cds-C9E96_RS03580;Parent=gene-C9E96_RS03580;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462055.1;locus_tag=C9E96_RS03580;partial=true;product=glutathione S-transferase C-terminal domain-containing protein;pseudo=true;start_range=.,96;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	610	1320	.	-	.	ID=gene-C9E96_RS03585;Name=C9E96_RS03585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03585;old_locus_tag=C9E96_03640
NZ_PYJX01000047.1	Protein Homology	CDS	610	1320	.	-	0	ID=cds-WP_001748656.1;Parent=gene-C9E96_RS03585;Dbxref=GenBank:WP_001748656.1;Name=WP_001748656.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462056.1;locus_tag=C9E96_RS03585;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_001748656.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	pseudogene	1320	2372	.	-	.	ID=gene-C9E96_RS03590;Name=C9E96_RS03590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS03590;old_locus_tag=C9E96_03645;pseudo=true
NZ_PYJX01000047.1	Protein Homology	CDS	1320	2372	.	-	0	ID=cds-C9E96_RS03590;Parent=gene-C9E96_RS03590;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462057.1;locus_tag=C9E96_RS03590;product=ABC transporter substrate-binding protein;pseudo=true;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	2448	2696	.	-	.	ID=gene-C9E96_RS03595;Name=hybG;gbkey=Gene;gene=hybG;gene_biotype=protein_coding;locus_tag=C9E96_RS03595;old_locus_tag=C9E96_03650
NZ_PYJX01000047.1	Protein Homology	CDS	2448	2696	.	-	0	ID=cds-WP_000334887.1;Parent=gene-C9E96_RS03595;Dbxref=GenBank:WP_000334887.1;Name=WP_000334887.1;gbkey=CDS;gene=hybG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462058.1;locus_tag=C9E96_RS03595;product=hydrogenase maturation factor HybG;protein_id=WP_000334887.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	2724	3065	.	-	.	ID=gene-C9E96_RS03600;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=C9E96_RS03600;old_locus_tag=C9E96_03655
NZ_PYJX01000047.1	Protein Homology	CDS	2724	3065	.	-	0	ID=cds-WP_000544945.1;Parent=gene-C9E96_RS03600;Dbxref=GenBank:WP_000544945.1;Name=WP_000544945.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462059.1;locus_tag=C9E96_RS03600;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544945.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	3058	3546	.	-	.	ID=gene-C9E96_RS03605;Name=hybE;gbkey=Gene;gene=hybE;gene_biotype=protein_coding;locus_tag=C9E96_RS03605;old_locus_tag=C9E96_03660
NZ_PYJX01000047.1	Protein Homology	CDS	3058	3546	.	-	0	ID=cds-WP_023203800.1;Parent=gene-C9E96_RS03605;Dbxref=GenBank:WP_023203800.1;Name=WP_023203800.1;gbkey=CDS;gene=hybE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462060.1;locus_tag=C9E96_RS03605;product=hydrogenase-2 assembly chaperone;protein_id=WP_023203800.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	3539	4033	.	-	.	ID=gene-C9E96_RS03610;Name=C9E96_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03610;old_locus_tag=C9E96_03665
NZ_PYJX01000047.1	Protein Homology	CDS	3539	4033	.	-	0	ID=cds-WP_001221960.1;Parent=gene-C9E96_RS03610;Dbxref=GenBank:WP_001221960.1;Name=WP_001221960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462061.1;locus_tag=C9E96_RS03610;product=HyaD/HybD family hydrogenase maturation endopeptidase;protein_id=WP_001221960.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	4033	5736	.	-	.	ID=gene-C9E96_RS03615;Name=hybC;gbkey=Gene;gene=hybC;gene_biotype=protein_coding;locus_tag=C9E96_RS03615;old_locus_tag=C9E96_03670
NZ_PYJX01000047.1	Protein Homology	CDS	4033	5736	.	-	0	ID=cds-WP_000083045.1;Parent=gene-C9E96_RS03615;Dbxref=GenBank:WP_000083045.1;Name=WP_000083045.1;Ontology_term=GO:0008901;gbkey=CDS;gene=hybC;go_function=ferredoxin hydrogenase activity|0008901||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462062.1;locus_tag=C9E96_RS03615;product=hydrogenase 2 large subunit;protein_id=WP_000083045.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	5733	6911	.	-	.	ID=gene-C9E96_RS03620;Name=hybB;gbkey=Gene;gene=hybB;gene_biotype=protein_coding;locus_tag=C9E96_RS03620;old_locus_tag=C9E96_03675
NZ_PYJX01000047.1	Protein Homology	CDS	5733	6911	.	-	0	ID=cds-WP_000017678.1;Parent=gene-C9E96_RS03620;Dbxref=GenBank:WP_000017678.1;Name=WP_000017678.1;gbkey=CDS;gene=hybB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462063.1;locus_tag=C9E96_RS03620;product=Ni/Fe-hydrogenase cytochrome b subunit;protein_id=WP_000017678.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	6901	7887	.	-	.	ID=gene-C9E96_RS03625;Name=hybA;gbkey=Gene;gene=hybA;gene_biotype=protein_coding;locus_tag=C9E96_RS03625;old_locus_tag=C9E96_03680
NZ_PYJX01000047.1	Protein Homology	CDS	6901	7887	.	-	0	ID=cds-WP_001081721.1;Parent=gene-C9E96_RS03625;Dbxref=GenBank:WP_001081721.1;Name=WP_001081721.1;gbkey=CDS;gene=hybA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462064.1;locus_tag=C9E96_RS03625;product=hydrogenase 2 operon protein HybA;protein_id=WP_001081721.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	7890	9008	.	-	.	ID=gene-C9E96_RS03630;Name=hybO;gbkey=Gene;gene=hybO;gene_biotype=protein_coding;locus_tag=C9E96_RS03630;old_locus_tag=C9E96_03685
NZ_PYJX01000047.1	Protein Homology	CDS	7890	9008	.	-	0	ID=cds-WP_000145429.1;Parent=gene-C9E96_RS03630;Dbxref=GenBank:WP_000145429.1;Name=WP_000145429.1;gbkey=CDS;gene=hybO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462065.1;locus_tag=C9E96_RS03630;product=hydrogenase 2 small subunit;protein_id=WP_000145429.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	9198	9485	.	-	.	ID=gene-C9E96_RS03635;Name=C9E96_RS03635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03635;old_locus_tag=C9E96_03695
NZ_PYJX01000047.1	Protein Homology	CDS	9198	9485	.	-	0	ID=cds-WP_001059119.1;Parent=gene-C9E96_RS03635;Dbxref=GenBank:WP_001059119.1;Name=WP_001059119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462066.1;locus_tag=C9E96_RS03635;product=DUF2623 family protein;protein_id=WP_001059119.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	9570	11213	.	-	.	ID=gene-C9E96_RS03640;Name=C9E96_RS03640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03640;old_locus_tag=C9E96_03700
NZ_PYJX01000047.1	Protein Homology	CDS	9570	11213	.	-	0	ID=cds-WP_001238434.1;Parent=gene-C9E96_RS03640;Dbxref=GenBank:WP_001238434.1;Name=WP_001238434.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462067.1;locus_tag=C9E96_RS03640;product=methyl-accepting chemotaxis protein;protein_id=WP_001238434.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	11520	12014	.	-	.	ID=gene-C9E96_RS03645;Name=C9E96_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03645;old_locus_tag=C9E96_03705
NZ_PYJX01000047.1	Protein Homology	CDS	11520	12014	.	-	0	ID=cds-WP_000439335.1;Parent=gene-C9E96_RS03645;Dbxref=GenBank:WP_000439335.1;Name=WP_000439335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462068.1;locus_tag=C9E96_RS03645;product=TIGR00645 family protein;protein_id=WP_000439335.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	12293	12796	.	-	.	ID=gene-C9E96_RS03650;Name=C9E96_RS03650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03650;old_locus_tag=C9E96_03715
NZ_PYJX01000047.1	Protein Homology	CDS	12293	12796	.	-	0	ID=cds-WP_001534190.1;Parent=gene-C9E96_RS03650;Dbxref=GenBank:WP_001534190.1;Name=WP_001534190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441059.1;locus_tag=C9E96_RS03650;product=ESA_00282 family adhesion-associated protein;protein_id=WP_001534190.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	12900	13310	.	+	.	ID=gene-C9E96_RS03655;Name=C9E96_RS03655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03655;old_locus_tag=C9E96_03720
NZ_PYJX01000047.1	Protein Homology	CDS	12900	13310	.	+	0	ID=cds-WP_000936449.1;Parent=gene-C9E96_RS03655;Dbxref=GenBank:WP_000936449.1;Name=WP_000936449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462070.1;locus_tag=C9E96_RS03655;product=hypothetical protein;protein_id=WP_000936449.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	13297	13701	.	+	.	ID=gene-C9E96_RS03660;Name=C9E96_RS03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03660;old_locus_tag=C9E96_03725
NZ_PYJX01000047.1	Protein Homology	CDS	13297	13701	.	+	0	ID=cds-WP_000665654.1;Parent=gene-C9E96_RS03660;Dbxref=GenBank:WP_000665654.1;Name=WP_000665654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462071.1;locus_tag=C9E96_RS03660;product=hypothetical protein;protein_id=WP_000665654.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	13825	14709	.	+	.	ID=gene-C9E96_RS03665;Name=C9E96_RS03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03665;old_locus_tag=C9E96_03730
NZ_PYJX01000047.1	Protein Homology	CDS	13825	14709	.	+	0	ID=cds-WP_000019032.1;Parent=gene-C9E96_RS03665;Dbxref=GenBank:WP_000019032.1;Name=WP_000019032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462072.1;locus_tag=C9E96_RS03665;product=SDR family oxidoreductase;protein_id=WP_000019032.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	14822	15247	.	-	.	ID=gene-C9E96_RS03670;Name=exbD;gbkey=Gene;gene=exbD;gene_biotype=protein_coding;locus_tag=C9E96_RS03670;old_locus_tag=C9E96_03735
NZ_PYJX01000047.1	Protein Homology	CDS	14822	15247	.	-	0	ID=cds-WP_001251476.1;Parent=gene-C9E96_RS03670;Dbxref=GenBank:WP_001251476.1;Name=WP_001251476.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=exbD;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462073.1;locus_tag=C9E96_RS03670;product=TonB system transport protein ExbD;protein_id=WP_001251476.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	15254	15988	.	-	.	ID=gene-C9E96_RS03675;Name=exbB;gbkey=Gene;gene=exbB;gene_biotype=protein_coding;locus_tag=C9E96_RS03675;old_locus_tag=C9E96_03740
NZ_PYJX01000047.1	Protein Homology	CDS	15254	15988	.	-	0	ID=cds-WP_000527862.1;Parent=gene-C9E96_RS03675;Dbxref=GenBank:WP_000527862.1;Name=WP_000527862.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=exbB;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462074.1;locus_tag=C9E96_RS03675;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_000527862.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	16240	17427	.	+	.	ID=gene-C9E96_RS03680;Name=metC;gbkey=Gene;gene=metC;gene_biotype=protein_coding;locus_tag=C9E96_RS03680;old_locus_tag=C9E96_03750
NZ_PYJX01000047.1	Protein Homology	CDS	16240	17427	.	+	0	ID=cds-WP_061375886.1;Parent=gene-C9E96_RS03680;Dbxref=GenBank:WP_061375886.1;Name=WP_061375886.1;Ontology_term=GO:0006520,GO:0019346,GO:0030170,GO:0047804;gbkey=CDS;gene=metC;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine-S-conjugate beta-lyase activity|0047804||IEA;go_process=amino acid metabolic process|0006520||IEA,transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462076.1;locus_tag=C9E96_RS03680;product=cystathionine beta-lyase;protein_id=WP_061375886.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	17567	18226	.	+	.	ID=gene-C9E96_RS03685;Name=yghB;gbkey=Gene;gene=yghB;gene_biotype=protein_coding;locus_tag=C9E96_RS03685;old_locus_tag=C9E96_03755
NZ_PYJX01000047.1	Protein Homology	CDS	17567	18226	.	+	0	ID=cds-WP_000268444.1;Parent=gene-C9E96_RS03685;Dbxref=GenBank:WP_000268444.1;Name=WP_000268444.1;gbkey=CDS;gene=yghB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462077.1;locus_tag=C9E96_RS03685;product=DedA family general envelope maintenance protein YghB;protein_id=WP_000268444.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	18290	19189	.	-	.	ID=gene-C9E96_RS03690;Name=C9E96_RS03690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03690;old_locus_tag=C9E96_03760
NZ_PYJX01000047.1	Protein Homology	CDS	18290	19189	.	-	0	ID=cds-WP_001078198.1;Parent=gene-C9E96_RS03690;Dbxref=GenBank:WP_001078198.1;Name=WP_001078198.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001407451.1;locus_tag=C9E96_RS03690;product=AraC family transcriptional regulator;protein_id=WP_001078198.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	19382	20545	.	+	.	ID=gene-C9E96_RS03695;Name=yqhD;gbkey=Gene;gene=yqhD;gene_biotype=protein_coding;locus_tag=C9E96_RS03695;old_locus_tag=C9E96_03765
NZ_PYJX01000047.1	Protein Homology	CDS	19382	20545	.	+	0	ID=cds-WP_001058729.1;Parent=gene-C9E96_RS03695;Dbxref=GenBank:WP_001058729.1;Name=WP_001058729.1;Ontology_term=GO:0046872,GO:1990362;gbkey=CDS;gene=yqhD;go_function=metal ion binding|0046872||IEA,butanol dehydrogenase (NAD+) activity|1990362||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462079.1;locus_tag=C9E96_RS03695;product=alcohol dehydrogenase;protein_id=WP_001058729.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	20651	21478	.	+	.	ID=gene-C9E96_RS03700;Name=dkgA;gbkey=Gene;gene=dkgA;gene_biotype=protein_coding;locus_tag=C9E96_RS03700;old_locus_tag=C9E96_03770
NZ_PYJX01000047.1	Protein Homology	CDS	20651	21478	.	+	0	ID=cds-WP_000013100.1;Parent=gene-C9E96_RS03700;Dbxref=GenBank:WP_000013100.1;Name=WP_000013100.1;Ontology_term=GO:0050580;gbkey=CDS;gene=dkgA;go_function=2%2C5-didehydrogluconate reductase activity|0050580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462080.1;locus_tag=C9E96_RS03700;product=2%2C5-didehydrogluconate reductase DkgA;protein_id=WP_000013100.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	pseudogene	21644	23129	.	+	.	ID=gene-C9E96_RS03705;Name=C9E96_RS03705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS03705;old_locus_tag=C9E96_03775;pseudo=true
NZ_PYJX01000047.1	Protein Homology	CDS	21644	23129	.	+	0	ID=cds-C9E96_RS03705;Parent=gene-C9E96_RS03705;Note=frameshifted;Ontology_term=GO:0006820,GO:0008509,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=monoatomic anion transmembrane transporter activity|0008509||IEA;go_process=monoatomic anion transport|0006820||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462081.3;locus_tag=C9E96_RS03705;product=DASS family sodium-coupled anion symporter;pseudo=true;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	23174	23629	.	+	.	ID=gene-C9E96_RS03710;Name=C9E96_RS03710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03710;old_locus_tag=C9E96_03780
NZ_PYJX01000047.1	Protein Homology	CDS	23174	23629	.	+	0	ID=cds-WP_000128242.1;Parent=gene-C9E96_RS03710;Dbxref=GenBank:WP_000128242.1;Name=WP_000128242.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462082.1;locus_tag=C9E96_RS03710;product=HIT family protein;protein_id=WP_000128242.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	23787	23981	.	-	.	ID=gene-C9E96_RS03715;Name=C9E96_RS03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03715;old_locus_tag=C9E96_03785
NZ_PYJX01000047.1	GeneMarkS-2+	CDS	23787	23981	.	-	0	ID=cds-WP_000525382.1;Parent=gene-C9E96_RS03715;Dbxref=GenBank:WP_000525382.1;Name=WP_000525382.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS03715;product=hypothetical protein;protein_id=WP_000525382.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	24184	26355	.	-	.	ID=gene-C9E96_RS03720;Name=C9E96_RS03720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03720;old_locus_tag=C9E96_03790
NZ_PYJX01000047.1	Protein Homology	CDS	24184	26355	.	-	0	ID=cds-WP_001274458.1;Parent=gene-C9E96_RS03720;Dbxref=GenBank:WP_001274458.1;Name=WP_001274458.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462083.1;locus_tag=C9E96_RS03720;product=YgiQ family radical SAM protein;protein_id=WP_001274458.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	26843	27826	.	+	.	ID=gene-C9E96_RS03725;Name=C9E96_RS03725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03725;old_locus_tag=C9E96_03795
NZ_PYJX01000047.1	Protein Homology	CDS	26843	27826	.	+	0	ID=cds-WP_000799367.1;Parent=gene-C9E96_RS03725;Dbxref=GenBank:WP_000799367.1;Name=WP_000799367.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462084.1;locus_tag=C9E96_RS03725;product=TRAP transporter substrate-binding protein;protein_id=WP_000799367.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	27868	28350	.	+	.	ID=gene-C9E96_RS03730;Name=C9E96_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03730;old_locus_tag=C9E96_03800
NZ_PYJX01000047.1	Protein Homology	CDS	27868	28350	.	+	0	ID=cds-WP_080203824.1;Parent=gene-C9E96_RS03730;Dbxref=GenBank:WP_080203824.1;Name=WP_080203824.1;Ontology_term=GO:0015740,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462085.1;locus_tag=C9E96_RS03730;product=TRAP transporter small permease;protein_id=WP_080203824.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	28361	29668	.	+	.	ID=gene-C9E96_RS03735;Name=C9E96_RS03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03735;old_locus_tag=C9E96_03805
NZ_PYJX01000047.1	Protein Homology	CDS	28361	29668	.	+	0	ID=cds-WP_000345261.1;Parent=gene-C9E96_RS03735;Dbxref=GenBank:WP_000345261.1;Name=WP_000345261.1;Ontology_term=GO:0008643,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462086.1;locus_tag=C9E96_RS03735;product=TRAP transporter large permease;protein_id=WP_000345261.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	29713	31125	.	-	.	ID=gene-C9E96_RS03740;Name=ftsP;gbkey=Gene;gene=ftsP;gene_biotype=protein_coding;locus_tag=C9E96_RS03740;old_locus_tag=C9E96_03810
NZ_PYJX01000047.1	Protein Homology	CDS	29713	31125	.	-	0	ID=cds-WP_000010658.1;Parent=gene-C9E96_RS03740;Dbxref=GenBank:WP_000010658.1;Name=WP_000010658.1;Ontology_term=GO:0043093,GO:0016491;gbkey=CDS;gene=ftsP;go_function=oxidoreductase activity|0016491||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462087.1;locus_tag=C9E96_RS03740;product=cell division protein FtsP;protein_id=WP_000010658.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	31199	31936	.	-	.	ID=gene-C9E96_RS03745;Name=plsC;gbkey=Gene;gene=plsC;gene_biotype=protein_coding;gene_synonym=parF;locus_tag=C9E96_RS03745;old_locus_tag=C9E96_03815
NZ_PYJX01000047.1	Protein Homology	CDS	31199	31936	.	-	0	ID=cds-WP_000965730.1;Parent=gene-C9E96_RS03745;Dbxref=GenBank:WP_000965730.1;Name=WP_000965730.1;gbkey=CDS;gene=plsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462088.1;locus_tag=C9E96_RS03745;product=1-acylglycerol-3-phosphate O-acyltransferase;protein_id=WP_000965730.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	32193	34451	.	-	.	ID=gene-C9E96_RS03750;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=C9E96_RS03750;old_locus_tag=C9E96_03820
NZ_PYJX01000047.1	Protein Homology	CDS	32193	34451	.	-	0	ID=cds-WP_001281853.1;Parent=gene-C9E96_RS03750;Dbxref=GenBank:WP_001281853.1;Name=WP_001281853.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parC;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462089.1;locus_tag=C9E96_RS03750;product=DNA topoisomerase IV subunit A;protein_id=WP_001281853.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	34562	35428	.	-	.	ID=gene-C9E96_RS03755;Name=C9E96_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03755;old_locus_tag=C9E96_03825
NZ_PYJX01000047.1	Protein Homology	CDS	34562	35428	.	-	0	ID=cds-WP_135493847.1;Parent=gene-C9E96_RS03755;Dbxref=GenBank:WP_135493847.1;Name=WP_135493847.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462090.1;locus_tag=C9E96_RS03755;product=AraC family transcriptional regulator;protein_id=WP_135493847.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	35500	35892	.	-	.	ID=gene-C9E96_RS03760;Name=C9E96_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03760;old_locus_tag=C9E96_03830
NZ_PYJX01000047.1	Protein Homology	CDS	35500	35892	.	-	0	ID=cds-WP_000731552.1;Parent=gene-C9E96_RS03760;Dbxref=GenBank:WP_000731552.1;Name=WP_000731552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462091.1;locus_tag=C9E96_RS03760;product=YgiW/YdeI family stress tolerance OB fold protein;protein_id=WP_000731552.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	36044	36703	.	+	.	ID=gene-C9E96_RS03765;Name=qseB;gbkey=Gene;gene=qseB;gene_biotype=protein_coding;locus_tag=C9E96_RS03765;old_locus_tag=C9E96_03835
NZ_PYJX01000047.1	Protein Homology	CDS	36044	36703	.	+	0	ID=cds-WP_001221574.1;Parent=gene-C9E96_RS03765;Dbxref=GenBank:WP_001221574.1;Name=WP_001221574.1;gbkey=CDS;gene=qseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462092.1;locus_tag=C9E96_RS03765;product=quorum sensing response regulator transcription factor QseB;protein_id=WP_001221574.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	36700	38049	.	+	.	ID=gene-C9E96_RS03770;Name=qseC;gbkey=Gene;gene=qseC;gene_biotype=protein_coding;locus_tag=C9E96_RS03770;old_locus_tag=C9E96_03840
NZ_PYJX01000047.1	Protein Homology	CDS	36700	38049	.	+	0	ID=cds-WP_000779327.1;Parent=gene-C9E96_RS03770;Dbxref=GenBank:WP_000779327.1;Name=WP_000779327.1;Ontology_term=GO:0007165,GO:0000155;gbkey=CDS;gene=qseC;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462093.1;locus_tag=C9E96_RS03770;product=quorum sensing histidine kinase QseC;protein_id=WP_000779327.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	38156	38737	.	+	.	ID=gene-C9E96_RS03775;Name=C9E96_RS03775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03775;old_locus_tag=C9E96_03845
NZ_PYJX01000047.1	Protein Homology	CDS	38156	38737	.	+	0	ID=cds-WP_135493849.1;Parent=gene-C9E96_RS03775;Dbxref=GenBank:WP_135493849.1;Name=WP_135493849.1;Ontology_term=GO:0008753,GO:0009055,GO:0010181,GO:0050136;gbkey=CDS;go_function=NADPH dehydrogenase (quinone) activity|0008753||IEA,electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462094.1;locus_tag=C9E96_RS03775;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_135493849.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	38769	39083	.	+	.	ID=gene-C9E96_RS03780;Name=C9E96_RS03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03780;old_locus_tag=C9E96_03850
NZ_PYJX01000047.1	Protein Homology	CDS	38769	39083	.	+	0	ID=cds-WP_001626736.1;Parent=gene-C9E96_RS03780;Dbxref=GenBank:WP_001626736.1;Name=WP_001626736.1;Ontology_term=GO:0017000,GO:0004497,GO:0016491;gbkey=CDS;go_function=monooxygenase activity|0004497||IEA,oxidoreductase activity|0016491||IEA;go_process=antibiotic biosynthetic process|0017000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462095.1;locus_tag=C9E96_RS03780;product=putative quinol monooxygenase;protein_id=WP_001626736.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	39208	41100	.	-	.	ID=gene-C9E96_RS03785;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=C9E96_RS03785;old_locus_tag=C9E96_03855
NZ_PYJX01000047.1	Protein Homology	CDS	39208	41100	.	-	0	ID=cds-WP_000195318.1;Parent=gene-C9E96_RS03785;Dbxref=GenBank:WP_000195318.1;Name=WP_000195318.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=parE;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462096.1;locus_tag=C9E96_RS03785;product=DNA topoisomerase IV subunit B;protein_id=WP_000195318.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	41128	41709	.	-	.	ID=gene-C9E96_RS03790;Name=yqiA;gbkey=Gene;gene=yqiA;gene_biotype=protein_coding;locus_tag=C9E96_RS03790;old_locus_tag=C9E96_03860
NZ_PYJX01000047.1	Protein Homology	CDS	41128	41709	.	-	0	ID=cds-WP_000105725.1;Parent=gene-C9E96_RS03790;Dbxref=GenBank:WP_000105725.1;Name=WP_000105725.1;gbkey=CDS;gene=yqiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462097.1;locus_tag=C9E96_RS03790;product=esterase YqiA;protein_id=WP_000105725.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	41709	42536	.	-	.	ID=gene-C9E96_RS03795;Name=cpdA;gbkey=Gene;gene=cpdA;gene_biotype=protein_coding;locus_tag=C9E96_RS03795;old_locus_tag=C9E96_03865
NZ_PYJX01000047.1	Protein Homology	CDS	41709	42536	.	-	0	ID=cds-WP_000444735.1;Parent=gene-C9E96_RS03795;Dbxref=GenBank:WP_000444735.1;Name=WP_000444735.1;Ontology_term=GO:0004115;gbkey=CDS;gene=cpdA;go_function=3'%2C5'-cyclic-AMP phosphodiesterase activity|0004115||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462098.1;locus_tag=C9E96_RS03795;product=3'%2C5'-cyclic-AMP phosphodiesterase;protein_id=WP_000444735.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	42561	42983	.	-	.	ID=gene-C9E96_RS03800;Name=C9E96_RS03800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03800;old_locus_tag=C9E96_03870
NZ_PYJX01000047.1	Protein Homology	CDS	42561	42983	.	-	0	ID=cds-WP_000833404.1;Parent=gene-C9E96_RS03800;Dbxref=GenBank:WP_000833404.1;Name=WP_000833404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462099.1;locus_tag=C9E96_RS03800;product=DUF1249 family protein;protein_id=WP_000833404.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	42980	43612	.	-	.	ID=gene-C9E96_RS03805;Name=nudF;gbkey=Gene;gene=nudF;gene_biotype=protein_coding;locus_tag=C9E96_RS03805;old_locus_tag=C9E96_03875
NZ_PYJX01000047.1	Protein Homology	CDS	42980	43612	.	-	0	ID=cds-WP_001231950.1;Parent=gene-C9E96_RS03805;Dbxref=GenBank:WP_001231950.1;Name=WP_001231950.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;gene=nudF;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462100.1;locus_tag=C9E96_RS03805;product=ADP-ribose diphosphatase;protein_id=WP_001231950.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	43813	45288	.	+	.	ID=gene-C9E96_RS03810;Name=tolC;gbkey=Gene;gene=tolC;gene_biotype=protein_coding;locus_tag=C9E96_RS03810;old_locus_tag=C9E96_03880
NZ_PYJX01000047.1	Protein Homology	CDS	43813	45288	.	+	0	ID=cds-WP_015899378.1;Parent=gene-C9E96_RS03810;Dbxref=GenBank:WP_015899378.1;Name=WP_015899378.1;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;gene=tolC;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462101.3;locus_tag=C9E96_RS03810;product=outer membrane channel protein TolC;protein_id=WP_015899378.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	45501	46172	.	+	.	ID=gene-C9E96_RS03815;Name=C9E96_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03815;old_locus_tag=C9E96_03890
NZ_PYJX01000047.1	Protein Homology	CDS	45501	46172	.	+	0	ID=cds-WP_000831528.1;Parent=gene-C9E96_RS03815;Dbxref=GenBank:WP_000831528.1;Name=WP_000831528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462102.1;locus_tag=C9E96_RS03815;product=DUF1190 family protein;protein_id=WP_000831528.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	46178	47341	.	+	.	ID=gene-C9E96_RS03820;Name=C9E96_RS03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03820;old_locus_tag=C9E96_03895
NZ_PYJX01000047.1	Protein Homology	CDS	46178	47341	.	+	0	ID=cds-WP_020839017.1;Parent=gene-C9E96_RS03820;Dbxref=GenBank:WP_020839017.1;Name=WP_020839017.1;Ontology_term=GO:0005524,GO:0016874,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,ligase activity|0016874||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462103.1;locus_tag=C9E96_RS03820;product=glutathionylspermidine synthase family protein;protein_id=WP_020839017.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	47402	48190	.	-	.	ID=gene-C9E96_RS03825;Name=ygiD;gbkey=Gene;gene=ygiD;gene_biotype=protein_coding;locus_tag=C9E96_RS03825;old_locus_tag=C9E96_03900
NZ_PYJX01000047.1	Protein Homology	CDS	47402	48190	.	-	0	ID=cds-WP_023232031.1;Parent=gene-C9E96_RS03825;Dbxref=GenBank:WP_023232031.1;Name=WP_023232031.1;gbkey=CDS;gene=ygiD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001356237.1;locus_tag=C9E96_RS03825;product=4%2C5-DOPA dioxygenase extradiol;protein_id=WP_023232031.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	48331	49104	.	+	.	ID=gene-C9E96_RS03830;Name=zupT;gbkey=Gene;gene=zupT;gene_biotype=protein_coding;locus_tag=C9E96_RS03830;old_locus_tag=C9E96_03905
NZ_PYJX01000047.1	Protein Homology	CDS	48331	49104	.	+	0	ID=cds-WP_000115871.1;Parent=gene-C9E96_RS03830;Dbxref=GenBank:WP_000115871.1;Name=WP_000115871.1;gbkey=CDS;gene=zupT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462105.1;locus_tag=C9E96_RS03830;product=zinc transporter ZupT;protein_id=WP_000115871.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	49171	49347	.	-	.	ID=gene-C9E96_RS24375;Name=C9E96_RS24375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24375;old_locus_tag=C9E96_03910
NZ_PYJX01000047.1	Protein Homology	CDS	49171	49347	.	-	0	ID=cds-WP_000469259.1;Parent=gene-C9E96_RS24375;Dbxref=GenBank:WP_000469259.1;Name=WP_000469259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518818.1;locus_tag=C9E96_RS24375;product=hypothetical protein;protein_id=WP_000469259.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	49747	51543	.	+	.	ID=gene-C9E96_RS03835;Name=C9E96_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03835;old_locus_tag=C9E96_03915
NZ_PYJX01000047.1	Protein Homology	CDS	49747	51543	.	+	0	ID=cds-WP_061378640.1;Parent=gene-C9E96_RS03835;Dbxref=GenBank:WP_061378640.1;Name=WP_061378640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016159766.1;locus_tag=C9E96_RS03835;product=aryl-sulfate sulfotransferase;protein_id=WP_061378640.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	51563	52234	.	+	.	ID=gene-C9E96_RS03840;Name=C9E96_RS03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03840;old_locus_tag=C9E96_03920
NZ_PYJX01000047.1	Protein Homology	CDS	51563	52234	.	+	0	ID=cds-WP_000096230.1;Parent=gene-C9E96_RS03840;Dbxref=GenBank:WP_000096230.1;Name=WP_000096230.1;Ontology_term=GO:0015035;gbkey=CDS;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462108.1;locus_tag=C9E96_RS03840;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=WP_000096230.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	52249	52926	.	+	.	ID=gene-C9E96_RS03845;Name=dsbI;gbkey=Gene;gene=dsbI;gene_biotype=protein_coding;locus_tag=C9E96_RS03845;old_locus_tag=C9E96_03925
NZ_PYJX01000047.1	Protein Homology	CDS	52249	52926	.	+	0	ID=cds-WP_000345576.1;Parent=gene-C9E96_RS03845;Dbxref=GenBank:WP_000345576.1;Name=WP_000345576.1;gbkey=CDS;gene=dsbI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462109.1;locus_tag=C9E96_RS03845;product=protein-disulfide oxidoreductase DsbI;protein_id=WP_000345576.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	53097	53750	.	-	.	ID=gene-C9E96_RS03850;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=C9E96_RS03850;old_locus_tag=C9E96_03930
NZ_PYJX01000047.1	Protein Homology	CDS	53097	53750	.	-	0	ID=cds-WP_001076978.1;Parent=gene-C9E96_RS03850;Dbxref=GenBank:WP_001076978.1;Name=WP_001076978.1;Ontology_term=GO:0008686;gbkey=CDS;gene=ribB;go_function=3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity|0008686||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462110.1;locus_tag=C9E96_RS03850;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=WP_001076978.1;transl_table=11
NZ_PYJX01000047.1	cmsearch	riboswitch	53856	54054	.	-	.	ID=id-NZ_PYJX01000047.1:53856..54054;Dbxref=RFAM:RF00050;Note=FMN riboswitch;bound_moiety=flavin mononucleotide;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYJX01000047.1	RefSeq	gene	54187	54486	.	+	.	ID=gene-C9E96_RS03855;Name=ubiK;gbkey=Gene;gene=ubiK;gene_biotype=protein_coding;gene_synonym=yqiC;locus_tag=C9E96_RS03855;old_locus_tag=C9E96_03935
NZ_PYJX01000047.1	Protein Homology	CDS	54187	54486	.	+	0	ID=cds-WP_000566825.1;Parent=gene-C9E96_RS03855;Dbxref=GenBank:WP_000566825.1;Name=WP_000566825.1;Ontology_term=GO:0006744,GO:0042802;gbkey=CDS;gene=ubiK;go_function=identical protein binding|0042802||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000566825.1;locus_tag=C9E96_RS03855;product=ubiquinone biosynthesis accessory factor UbiK;protein_id=WP_000566825.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	54560	54769	.	-	.	ID=gene-C9E96_RS03860;Name=glgS;gbkey=Gene;gene=glgS;gene_biotype=protein_coding;locus_tag=C9E96_RS03860;old_locus_tag=C9E96_03940
NZ_PYJX01000047.1	Protein Homology	CDS	54560	54769	.	-	0	ID=cds-WP_000928927.1;Parent=gene-C9E96_RS03860;Dbxref=GenBank:WP_000928927.1;Name=WP_000928927.1;gbkey=CDS;gene=glgS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462112.1;locus_tag=C9E96_RS03860;product=cell surface composition regulator GlgS;protein_id=WP_000928927.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	55027	55647	.	+	.	ID=gene-C9E96_RS03865;Name=C9E96_RS03865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03865;old_locus_tag=C9E96_03945
NZ_PYJX01000047.1	Protein Homology	CDS	55027	55647	.	+	0	ID=cds-WP_000171739.1;Parent=gene-C9E96_RS03865;Dbxref=GenBank:WP_000171739.1;Name=WP_000171739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462113.1;locus_tag=C9E96_RS03865;product=OB-fold-containig protein;protein_id=WP_000171739.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	55666	57345	.	+	.	ID=gene-C9E96_RS03870;Name=C9E96_RS03870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03870;old_locus_tag=C9E96_03950
NZ_PYJX01000047.1	Protein Homology	CDS	55666	57345	.	+	0	ID=cds-WP_000342879.1;Parent=gene-C9E96_RS03870;Dbxref=GenBank:WP_000342879.1;Name=WP_000342879.1;Ontology_term=GO:0016020,GO:0016600;gbkey=CDS;go_component=membrane|0016020||IEA,flotillin complex|0016600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462114.1;locus_tag=C9E96_RS03870;product=flotillin family protein;protein_id=WP_000342879.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	57585	57644	.	+	.	ID=gene-C9E96_RS24020;Name=C9E96_RS24020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24020
NZ_PYJX01000047.1	Protein Homology	CDS	57585	57644	.	+	0	ID=cds-WP_111754053.1;Parent=gene-C9E96_RS24020;Dbxref=GenBank:WP_111754053.1;Name=WP_111754053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791255.1;locus_tag=C9E96_RS24020;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_111754053.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	57804	59237	.	-	.	ID=gene-C9E96_RS03880;Name=hldE;gbkey=Gene;gene=hldE;gene_biotype=protein_coding;locus_tag=C9E96_RS03880;old_locus_tag=C9E96_03960
NZ_PYJX01000047.1	Protein Homology	CDS	57804	59237	.	-	0	ID=cds-WP_000867682.1;Parent=gene-C9E96_RS03880;Dbxref=GenBank:WP_000867682.1;Name=WP_000867682.1;Ontology_term=GO:0005975,GO:0009058,GO:0016779;gbkey=CDS;gene=hldE;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=carbohydrate metabolic process|0005975||IEA,biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462115.1;locus_tag=C9E96_RS03880;product=bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE;protein_id=WP_000867682.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	59285	62128	.	-	.	ID=gene-C9E96_RS03885;Name=glnE;gbkey=Gene;gene=glnE;gene_biotype=protein_coding;locus_tag=C9E96_RS03885;old_locus_tag=C9E96_03965
NZ_PYJX01000047.1	Protein Homology	CDS	59285	62128	.	-	0	ID=cds-WP_000188315.1;Parent=gene-C9E96_RS03885;Dbxref=GenBank:WP_000188315.1;Name=WP_000188315.1;Ontology_term=GO:0008882;gbkey=CDS;gene=glnE;go_function=[glutamate-ammonia-ligase] adenylyltransferase activity|0008882||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462116.1;locus_tag=C9E96_RS03885;product=bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase;protein_id=WP_000188315.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	62246	63547	.	-	.	ID=gene-C9E96_RS03890;Name=C9E96_RS03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03890;old_locus_tag=C9E96_03970
NZ_PYJX01000047.1	Protein Homology	CDS	62246	63547	.	-	0	ID=cds-WP_000046224.1;Parent=gene-C9E96_RS03890;Dbxref=GenBank:WP_000046224.1;Name=WP_000046224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462117.1;locus_tag=C9E96_RS03890;product=inorganic triphosphatase;protein_id=WP_000046224.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	63789	64403	.	+	.	ID=gene-C9E96_RS03895;Name=C9E96_RS03895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03895;old_locus_tag=C9E96_03980
NZ_PYJX01000047.1	Protein Homology	CDS	63789	64403	.	+	0	ID=cds-WP_001125344.1;Parent=gene-C9E96_RS03895;Dbxref=GenBank:WP_001125344.1;Name=WP_001125344.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462118.1;locus_tag=C9E96_RS03895;product=TIGR04211 family SH3 domain-containing protein;protein_id=WP_001125344.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	64466	65707	.	+	.	ID=gene-C9E96_RS03900;Name=C9E96_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03900;old_locus_tag=C9E96_03985
NZ_PYJX01000047.1	Protein Homology	CDS	64466	65707	.	+	0	ID=cds-WP_135493851.1;Parent=gene-C9E96_RS03900;Dbxref=GenBank:WP_135493851.1;Name=WP_135493851.1;Ontology_term=GO:0001680,GO:0003723,GO:0004810,GO:0005524;gbkey=CDS;go_function=RNA binding|0003723||IEA,CCA tRNA nucleotidyltransferase activity|0004810||IEA,ATP binding|0005524||IEA;go_process=tRNA 3'-terminal CCA addition|0001680||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462119.1;locus_tag=C9E96_RS03900;product=multifunctional CCA addition/repair protein;protein_id=WP_135493851.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	65812	66633	.	-	.	ID=gene-C9E96_RS03905;Name=bacA;gbkey=Gene;gene=bacA;gene_biotype=protein_coding;locus_tag=C9E96_RS03905;old_locus_tag=C9E96_03990
NZ_PYJX01000047.1	Protein Homology	CDS	65812	66633	.	-	0	ID=cds-WP_001281933.1;Parent=gene-C9E96_RS03905;Dbxref=GenBank:WP_001281933.1;Name=WP_001281933.1;Ontology_term=GO:0016311,GO:0050380,GO:0016020;gbkey=CDS;gene=bacA;go_component=membrane|0016020||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311967.1;locus_tag=C9E96_RS03905;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_001281933.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	66731	67090	.	-	.	ID=gene-C9E96_RS03910;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=C9E96_RS03910;old_locus_tag=C9E96_03995
NZ_PYJX01000047.1	Protein Homology	CDS	66731	67090	.	-	0	ID=cds-WP_000355776.1;Parent=gene-C9E96_RS03910;Dbxref=GenBank:WP_000355776.1;Name=WP_000355776.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folB;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001681574.1;locus_tag=C9E96_RS03910;product=bifunctional dihydroneopterin aldolase/7%2C8-dihydroneopterin epimerase;protein_id=WP_000355776.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	67197	67808	.	+	.	ID=gene-C9E96_RS03915;Name=plsY;gbkey=Gene;gene=plsY;gene_biotype=protein_coding;locus_tag=C9E96_RS03915;old_locus_tag=C9E96_04000
NZ_PYJX01000047.1	Protein Homology	CDS	67197	67808	.	+	0	ID=cds-WP_001272784.1;Parent=gene-C9E96_RS03915;Dbxref=GenBank:WP_001272784.1;Name=WP_001272784.1;Ontology_term=GO:0006654,GO:0008374,GO:0005886;gbkey=CDS;gene=plsY;go_component=plasma membrane|0005886||IEA;go_function=O-acyltransferase activity|0008374||IEA;go_process=phosphatidic acid biosynthetic process|0006654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462122.1;locus_tag=C9E96_RS03915;product=glycerol-3-phosphate 1-O-acyltransferase PlsY;protein_id=WP_001272784.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	pseudogene	67792	67935	.	+	.	ID=gene-C9E96_RS23920;Name=C9E96_RS23920;end_range=67935,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23920;partial=true;pseudo=true;start_range=.,67792
NZ_PYJX01000047.1	Protein Homology	CDS	67792	67935	.	+	0	ID=cds-C9E96_RS23920;Parent=gene-C9E96_RS23920;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0016829;end_range=67935,.;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311971.1;locus_tag=C9E96_RS23920;partial=true;product=fumarate hydratase;pseudo=true;start_range=.,67792;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	68058	69071	.	-	.	ID=gene-C9E96_RS03925;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=C9E96_RS03925;old_locus_tag=C9E96_04010
NZ_PYJX01000047.1	Protein Homology	CDS	68058	69071	.	-	0	ID=cds-WP_001264391.1;Parent=gene-C9E96_RS03925;Dbxref=GenBank:WP_001264391.1;Name=WP_001264391.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaD;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001264383.1;locus_tag=C9E96_RS03925;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_001264391.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	69299	69514	.	+	.	ID=gene-C9E96_RS03930;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=C9E96_RS03930;old_locus_tag=C9E96_04020
NZ_PYJX01000047.1	Protein Homology	CDS	69299	69514	.	+	0	ID=cds-WP_001144069.1;Parent=gene-C9E96_RS03930;Dbxref=GenBank:WP_001144069.1;Name=WP_001144069.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsU;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311975.1;locus_tag=C9E96_RS03930;product=30S ribosomal protein S21;protein_id=WP_001144069.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	69750	71495	.	+	.	ID=gene-C9E96_RS03935;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=C9E96_RS03935;old_locus_tag=C9E96_04025
NZ_PYJX01000047.1	Protein Homology	CDS	69750	71495	.	+	0	ID=cds-WP_000918865.1;Parent=gene-C9E96_RS03935;Dbxref=GenBank:WP_000918865.1;Name=WP_000918865.1;Ontology_term=GO:0006269,GO:0003899;gbkey=CDS;gene=dnaG;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA replication%2C synthesis of primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462125.1;locus_tag=C9E96_RS03935;product=DNA primase;protein_id=WP_000918865.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	71510	73492	.	+	.	ID=gene-C9E96_RS03940;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=C9E96_RS03940;old_locus_tag=C9E96_04030
NZ_PYJX01000047.1	Protein Homology	CDS	71510	73492	.	+	0	ID=cds-WP_001120159.1;Parent=gene-C9E96_RS03940;Dbxref=GenBank:WP_001120159.1;Name=WP_001120159.1;Ontology_term=GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: protein motif:HMM:NF004208.0;locus_tag=C9E96_RS03940;product=RNA polymerase sigma factor RpoD;protein_id=WP_001120159.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	73616	74122	.	-	.	ID=gene-C9E96_RS03945;Name=mug;gbkey=Gene;gene=mug;gene_biotype=protein_coding;locus_tag=C9E96_RS03945;old_locus_tag=C9E96_04035
NZ_PYJX01000047.1	Protein Homology	CDS	73616	74122	.	-	0	ID=cds-WP_135493853.1;Parent=gene-C9E96_RS03945;Dbxref=GenBank:WP_135493853.1;Name=WP_135493853.1;Ontology_term=GO:0006285,GO:0000700;gbkey=CDS;gene=mug;go_function=mismatch base pair DNA N-glycosylase activity|0000700||IEA;go_process=base-excision repair%2C AP site formation|0006285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462127.1;locus_tag=C9E96_RS03945;product=G/U mismatch-specific DNA glycosylase;protein_id=WP_135493853.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	74248	74323	.	+	.	ID=gene-C9E96_RS03950;Name=C9E96_RS03950;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS03950;old_locus_tag=C9E96_04040
NZ_PYJX01000047.1	tRNAscan-SE	tRNA	74248	74323	.	+	.	ID=rna-C9E96_RS03950;Parent=gene-C9E96_RS03950;anticodon=(pos:74281..74283);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03950;product=tRNA-Ile
NZ_PYJX01000047.1	tRNAscan-SE	exon	74248	74323	.	+	.	ID=exon-C9E96_RS03950-1;Parent=rna-C9E96_RS03950;anticodon=(pos:74281..74283);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS03950;product=tRNA-Ile
NZ_PYJX01000047.1	RefSeq	gene	74403	75170	.	-	.	ID=gene-C9E96_RS03955;Name=C9E96_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03955;old_locus_tag=C9E96_04045
NZ_PYJX01000047.1	Protein Homology	CDS	74403	75170	.	-	0	ID=cds-WP_135493855.1;Parent=gene-C9E96_RS03955;Dbxref=GenBank:WP_135493855.1;Name=WP_135493855.1;Ontology_term=GO:0015891,GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462128.1;locus_tag=C9E96_RS03955;product=siderophore-interacting protein;protein_id=WP_135493855.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	75402	76049	.	+	.	ID=gene-C9E96_RS03960;Name=C9E96_RS03960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03960;old_locus_tag=C9E96_04050
NZ_PYJX01000047.1	Protein Homology	CDS	75402	76049	.	+	0	ID=cds-WP_000983434.1;Parent=gene-C9E96_RS03960;Dbxref=GenBank:WP_000983434.1;Name=WP_000983434.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462129.1;locus_tag=C9E96_RS03960;product=PadR family transcriptional regulator;protein_id=WP_000983434.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	76046	77614	.	-	.	ID=gene-C9E96_RS03965;Name=C9E96_RS03965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03965;old_locus_tag=C9E96_04055
NZ_PYJX01000047.1	Protein Homology	CDS	76046	77614	.	-	0	ID=cds-WP_000478462.1;Parent=gene-C9E96_RS03965;Dbxref=GenBank:WP_000478462.1;Name=WP_000478462.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462130.1;locus_tag=C9E96_RS03965;product=methyl-accepting chemotaxis protein;protein_id=WP_000478462.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	78002	79522	.	-	.	ID=gene-C9E96_RS03970;Name=C9E96_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03970;old_locus_tag=C9E96_04060
NZ_PYJX01000047.1	Protein Homology	CDS	78002	79522	.	-	0	ID=cds-WP_080203823.1;Parent=gene-C9E96_RS03970;Dbxref=GenBank:WP_080203823.1;Name=WP_080203823.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462131.1;locus_tag=C9E96_RS03970;product=methyl-accepting chemotaxis protein;protein_id=WP_080203823.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	79952	81331	.	+	.	ID=gene-C9E96_RS03975;Name=ygjG;gbkey=Gene;gene=ygjG;gene_biotype=protein_coding;locus_tag=C9E96_RS03975;old_locus_tag=C9E96_04070
NZ_PYJX01000047.1	Protein Homology	CDS	79952	81331	.	+	0	ID=cds-WP_001520281.1;Parent=gene-C9E96_RS03975;Dbxref=GenBank:WP_001520281.1;Name=WP_001520281.1;Ontology_term=GO:0009447,GO:0030170,GO:0033094;gbkey=CDS;gene=ygjG;go_function=pyridoxal phosphate binding|0030170||IEA,putrescine--2-oxoglutarate transaminase activity|0033094||IEA;go_process=putrescine catabolic process|0009447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894971.1;locus_tag=C9E96_RS03975;product=putrescine aminotransferase;protein_id=WP_001520281.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	81501	83519	.	+	.	ID=gene-C9E96_RS03980;Name=C9E96_RS03980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03980;old_locus_tag=C9E96_04075
NZ_PYJX01000047.1	Protein Homology	CDS	81501	83519	.	+	0	ID=cds-WP_135493857.1;Parent=gene-C9E96_RS03980;Dbxref=GenBank:WP_135493857.1;Name=WP_135493857.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462133.1;locus_tag=C9E96_RS03980;product=NADPH-dependent 2%2C4-dienoyl-CoA reductase;protein_id=WP_135493857.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	83600	84736	.	-	.	ID=gene-C9E96_RS03985;Name=rlmG;gbkey=Gene;gene=rlmG;gene_biotype=protein_coding;locus_tag=C9E96_RS03985;old_locus_tag=C9E96_04080
NZ_PYJX01000047.1	Protein Homology	CDS	83600	84736	.	-	0	ID=cds-WP_000019985.1;Parent=gene-C9E96_RS03985;Dbxref=GenBank:WP_000019985.1;Name=WP_000019985.1;Ontology_term=GO:0031167,GO:0003676,GO:0008990;gbkey=CDS;gene=rlmG;go_function=nucleic acid binding|0003676||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462134.1;locus_tag=C9E96_RS03985;product=23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG;protein_id=WP_000019985.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	84822	85319	.	+	.	ID=gene-C9E96_RS03990;Name=C9E96_RS03990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03990;old_locus_tag=C9E96_04085
NZ_PYJX01000047.1	Protein Homology	CDS	84822	85319	.	+	0	ID=cds-WP_000202966.1;Parent=gene-C9E96_RS03990;Dbxref=GenBank:WP_000202966.1;Name=WP_000202966.1;Ontology_term=GO:0008270,GO:0016787,GO:0046872;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462135.1;locus_tag=C9E96_RS03990;product=M48 metallopeptidase family protein;protein_id=WP_000202966.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	85471	86163	.	+	.	ID=gene-C9E96_RS03995;Name=C9E96_RS03995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03995;old_locus_tag=C9E96_04090
NZ_PYJX01000047.1	Protein Homology	CDS	85471	86163	.	+	0	ID=cds-WP_000951045.1;Parent=gene-C9E96_RS03995;Dbxref=GenBank:WP_000951045.1;Name=WP_000951045.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462136.1;locus_tag=C9E96_RS03995;product=SanA/YdcF family protein;protein_id=WP_000951045.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	86252	87250	.	+	.	ID=gene-C9E96_RS04000;Name=C9E96_RS04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04000;old_locus_tag=C9E96_04095
NZ_PYJX01000047.1	Protein Homology	CDS	86252	87250	.	+	0	ID=cds-WP_080203821.1;Parent=gene-C9E96_RS04000;Dbxref=GenBank:WP_080203821.1;Name=WP_080203821.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462137.1;locus_tag=C9E96_RS04000;product=Gfo/Idh/MocA family protein;protein_id=WP_080203821.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	87520	88488	.	+	.	ID=gene-C9E96_RS04005;Name=C9E96_RS04005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04005;old_locus_tag=C9E96_04100
NZ_PYJX01000047.1	Protein Homology	CDS	87520	88488	.	+	0	ID=cds-WP_001098833.1;Parent=gene-C9E96_RS04005;Dbxref=GenBank:WP_001098833.1;Name=WP_001098833.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462138.1;locus_tag=C9E96_RS04005;product=TerC family protein;protein_id=WP_001098833.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	88743	89987	.	+	.	ID=gene-C9E96_RS04010;Name=sstT;gbkey=Gene;gene=sstT;gene_biotype=protein_coding;locus_tag=C9E96_RS04010;old_locus_tag=C9E96_04105
NZ_PYJX01000047.1	Protein Homology	CDS	88743	89987	.	+	0	ID=cds-WP_000235363.1;Parent=gene-C9E96_RS04010;Dbxref=GenBank:WP_000235363.1;Name=WP_000235363.1;Ontology_term=GO:0015826,GO:0032329,GO:0015293,GO:0016020;gbkey=CDS;gene=sstT;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=threonine transport|0015826||IEA,serine transport|0032329||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462139.1;locus_tag=C9E96_RS04010;product=serine/threonine transporter SstT;protein_id=WP_000235363.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	90437	91099	.	+	.	ID=gene-C9E96_RS04015;Name=yqjA;gbkey=Gene;gene=yqjA;gene_biotype=protein_coding;locus_tag=C9E96_RS04015;old_locus_tag=C9E96_04115
NZ_PYJX01000047.1	Protein Homology	CDS	90437	91099	.	+	0	ID=cds-WP_000422143.1;Parent=gene-C9E96_RS04015;Dbxref=GenBank:WP_000422143.1;Name=WP_000422143.1;gbkey=CDS;gene=yqjA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462140.1;locus_tag=C9E96_RS04015;product=DedA family general envelope maintenance protein YqjA;protein_id=WP_000422143.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	91103	91486	.	+	.	ID=gene-C9E96_RS04020;Name=mzrA;gbkey=Gene;gene=mzrA;gene_biotype=protein_coding;locus_tag=C9E96_RS04020;old_locus_tag=C9E96_04120
NZ_PYJX01000047.1	Protein Homology	CDS	91103	91486	.	+	0	ID=cds-WP_000917516.1;Parent=gene-C9E96_RS04020;Dbxref=GenBank:WP_000917516.1;Name=WP_000917516.1;gbkey=CDS;gene=mzrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462141.1;locus_tag=C9E96_RS04020;product=EnvZ/OmpR regulon moderator MzrA;protein_id=WP_000917516.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	91631	91999	.	+	.	ID=gene-C9E96_RS04025;Name=C9E96_RS04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04025;old_locus_tag=C9E96_04125
NZ_PYJX01000047.1	Protein Homology	CDS	91631	91999	.	+	0	ID=cds-WP_000877300.1;Parent=gene-C9E96_RS04025;Dbxref=GenBank:WP_000877300.1;Name=WP_000877300.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462142.1;locus_tag=C9E96_RS04025;product=DUF1090 domain-containing protein;protein_id=WP_000877300.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	92041	92346	.	+	.	ID=gene-C9E96_RS04030;Name=C9E96_RS04030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04030;old_locus_tag=C9E96_04130
NZ_PYJX01000047.1	Protein Homology	CDS	92041	92346	.	+	0	ID=cds-WP_135493859.1;Parent=gene-C9E96_RS04030;Dbxref=GenBank:WP_135493859.1;Name=WP_135493859.1;Ontology_term=GO:0043022,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=ribosome binding|0043022||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462143.1;locus_tag=C9E96_RS04030;product=DUF883 family protein;protein_id=WP_135493859.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	92349	92747	.	+	.	ID=gene-C9E96_RS04035;Name=C9E96_RS04035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04035;old_locus_tag=C9E96_04135
NZ_PYJX01000047.1	Protein Homology	CDS	92349	92747	.	+	0	ID=cds-WP_000785626.1;Parent=gene-C9E96_RS04035;Dbxref=GenBank:WP_000785626.1;Name=WP_000785626.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462144.1;locus_tag=C9E96_RS04035;product=phage holin family protein;protein_id=WP_000785626.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	92744	93043	.	+	.	ID=gene-C9E96_RS04040;Name=C9E96_RS04040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04040;old_locus_tag=C9E96_04140
NZ_PYJX01000047.1	Protein Homology	CDS	92744	93043	.	+	0	ID=cds-WP_000095496.1;Parent=gene-C9E96_RS04040;Dbxref=GenBank:WP_000095496.1;Name=WP_000095496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462145.1;locus_tag=C9E96_RS04040;product=YqjK-like family protein;protein_id=WP_000095496.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	93281	93673	.	+	.	ID=gene-C9E96_RS04045;Name=C9E96_RS04045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04045;old_locus_tag=C9E96_04145
NZ_PYJX01000047.1	Protein Homology	CDS	93281	93673	.	+	0	ID=cds-WP_001592732.1;Parent=gene-C9E96_RS04045;Dbxref=GenBank:WP_001592732.1;Name=WP_001592732.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008503138.1;locus_tag=C9E96_RS04045;product=DoxX family protein;protein_id=WP_001592732.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	93741	94727	.	+	.	ID=gene-C9E96_RS04050;Name=C9E96_RS04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04050;old_locus_tag=C9E96_04150
NZ_PYJX01000047.1	Protein Homology	CDS	93741	94727	.	+	0	ID=cds-WP_135493861.1;Parent=gene-C9E96_RS04050;Dbxref=GenBank:WP_135493861.1;Name=WP_135493861.1;Ontology_term=GO:0004364,GO:0016491;gbkey=CDS;go_function=glutathione transferase activity|0004364||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462147.1;locus_tag=C9E96_RS04050;product=glutathione S-transferase family protein;protein_id=WP_135493861.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	94851	95216	.	+	.	ID=gene-C9E96_RS04055;Name=C9E96_RS04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04055;old_locus_tag=C9E96_04155
NZ_PYJX01000047.1	Protein Homology	CDS	94851	95216	.	+	0	ID=cds-WP_000384139.1;Parent=gene-C9E96_RS04055;Dbxref=GenBank:WP_000384139.1;Name=WP_000384139.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462148.1;locus_tag=C9E96_RS04055;product=DUF805 domain-containing protein;protein_id=WP_000384139.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	95255	96151	.	-	.	ID=gene-C9E96_RS04060;Name=yhaJ;gbkey=Gene;gene=yhaJ;gene_biotype=protein_coding;locus_tag=C9E96_RS04060;old_locus_tag=C9E96_04160
NZ_PYJX01000047.1	Protein Homology	CDS	95255	96151	.	-	0	ID=cds-WP_001041026.1;Parent=gene-C9E96_RS04060;Dbxref=GenBank:WP_001041026.1;Name=WP_001041026.1;gbkey=CDS;gene=yhaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462149.1;locus_tag=C9E96_RS04060;product=DNA-binding transcriptional regulator YhaJ;protein_id=WP_001041026.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	96256	96957	.	+	.	ID=gene-C9E96_RS04065;Name=C9E96_RS04065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04065;old_locus_tag=C9E96_04165
NZ_PYJX01000047.1	Protein Homology	CDS	96256	96957	.	+	0	ID=cds-WP_080203819.1;Parent=gene-C9E96_RS04065;Dbxref=GenBank:WP_080203819.1;Name=WP_080203819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462150.1;locus_tag=C9E96_RS04065;product=pirin family protein;protein_id=WP_080203819.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	96981	97145	.	+	.	ID=gene-C9E96_RS04070;Name=C9E96_RS04070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04070;old_locus_tag=C9E96_04170
NZ_PYJX01000047.1	Protein Homology	CDS	96981	97145	.	+	0	ID=cds-WP_000039324.1;Parent=gene-C9E96_RS04070;Dbxref=GenBank:WP_000039324.1;Name=WP_000039324.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462151.1;locus_tag=C9E96_RS04070;product=hypothetical protein;protein_id=WP_000039324.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	97258	98568	.	-	.	ID=gene-C9E96_RS04075;Name=C9E96_RS04075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04075;old_locus_tag=C9E96_04175
NZ_PYJX01000047.1	Protein Homology	CDS	97258	98568	.	-	0	ID=cds-WP_000463071.1;Parent=gene-C9E96_RS04075;Dbxref=GenBank:WP_000463071.1;Name=WP_000463071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462152.1;locus_tag=C9E96_RS04075;product=serine dehydratase subunit alpha family protein;protein_id=WP_000463071.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	98594	99925	.	-	.	ID=gene-C9E96_RS04080;Name=C9E96_RS04080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04080;old_locus_tag=C9E96_04180
NZ_PYJX01000047.1	Protein Homology	CDS	98594	99925	.	-	0	ID=cds-WP_000443187.1;Parent=gene-C9E96_RS04080;Dbxref=GenBank:WP_000443187.1;Name=WP_000443187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462153.1;locus_tag=C9E96_RS04080;product=amino acid permease;protein_id=WP_000443187.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	100240	101604	.	-	.	ID=gene-C9E96_RS04085;Name=tdcG;gbkey=Gene;gene=tdcG;gene_biotype=protein_coding;locus_tag=C9E96_RS04085;old_locus_tag=C9E96_04185
NZ_PYJX01000047.1	Protein Homology	CDS	100240	101604	.	-	0	ID=cds-WP_080090856.1;Parent=gene-C9E96_RS04085;Dbxref=GenBank:WP_080090856.1;Name=WP_080090856.1;gbkey=CDS;gene=tdcG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462154.1;locus_tag=C9E96_RS04085;product=L-serine ammonia-lyase;protein_id=WP_080090856.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	101674	103968	.	-	.	ID=gene-C9E96_RS04090;Name=pflB;gbkey=Gene;gene=pflB;gene_biotype=protein_coding;locus_tag=C9E96_RS04090;old_locus_tag=C9E96_04190
NZ_PYJX01000047.1	Protein Homology	CDS	101674	103968	.	-	0	ID=cds-WP_000867323.1;Parent=gene-C9E96_RS04090;Dbxref=GenBank:WP_000867323.1;Name=WP_000867323.1;Ontology_term=GO:0005975,GO:0008861,GO:0005737;gbkey=CDS;gene=pflB;go_component=cytoplasm|0005737||IEA;go_function=formate C-acetyltransferase activity|0008861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462155.1;locus_tag=C9E96_RS04090;product=formate C-acetyltransferase;protein_id=WP_000867323.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	104002	105210	.	-	.	ID=gene-C9E96_RS04095;Name=tdcD;gbkey=Gene;gene=tdcD;gene_biotype=protein_coding;locus_tag=C9E96_RS04095;old_locus_tag=C9E96_04195
NZ_PYJX01000047.1	Protein Homology	CDS	104002	105210	.	-	0	ID=cds-WP_023205496.1;Parent=gene-C9E96_RS04095;Dbxref=GenBank:WP_023205496.1;Name=WP_023205496.1;Ontology_term=GO:0006082,GO:0016310,GO:0016301;gbkey=CDS;gene=tdcD;go_function=kinase activity|0016301||IEA;go_process=organic acid metabolic process|0006082||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462156.1;locus_tag=C9E96_RS04095;product=propionate kinase;protein_id=WP_023205496.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	105277	106608	.	-	.	ID=gene-C9E96_RS04100;Name=tdcC;gbkey=Gene;gene=tdcC;gene_biotype=protein_coding;locus_tag=C9E96_RS04100;old_locus_tag=C9E96_04200
NZ_PYJX01000047.1	Protein Homology	CDS	105277	106608	.	-	0	ID=cds-WP_000108129.1;Parent=gene-C9E96_RS04100;Dbxref=GenBank:WP_000108129.1;Name=WP_000108129.1;gbkey=CDS;gene=tdcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462157.1;locus_tag=C9E96_RS04100;product=threonine/serine transporter TdcC;protein_id=WP_000108129.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	106629	107618	.	-	.	ID=gene-C9E96_RS04105;Name=tdcB;gbkey=Gene;gene=tdcB;gene_biotype=protein_coding;locus_tag=C9E96_RS04105;old_locus_tag=C9E96_04205
NZ_PYJX01000047.1	Protein Homology	CDS	106629	107618	.	-	0	ID=cds-WP_000548366.1;Parent=gene-C9E96_RS04105;Dbxref=GenBank:WP_000548366.1;Name=WP_000548366.1;Ontology_term=GO:0006567,GO:0004794,GO:0030170;gbkey=CDS;gene=tdcB;go_function=threonine deaminase activity|0004794||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462158.1;locus_tag=C9E96_RS04105;product=bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB;protein_id=WP_000548366.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	107716	108654	.	-	.	ID=gene-C9E96_RS04110;Name=tdcA;gbkey=Gene;gene=tdcA;gene_biotype=protein_coding;locus_tag=C9E96_RS04110;old_locus_tag=C9E96_04210
NZ_PYJX01000047.1	Protein Homology	CDS	107716	108654	.	-	0	ID=cds-WP_001534138.1;Parent=gene-C9E96_RS04110;Dbxref=GenBank:WP_001534138.1;Name=WP_001534138.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=tdcA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462159.1;locus_tag=C9E96_RS04110;product=transcriptional regulator TdcA;protein_id=WP_001534138.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	109485	109859	.	-	.	ID=gene-C9E96_RS04120;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=C9E96_RS04120;old_locus_tag=C9E96_04225
NZ_PYJX01000047.1	cmsearch	RNase_P_RNA	109485	109859	.	-	.	ID=rna-C9E96_RS04120;Parent=gene-C9E96_RS04120;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS04120;product=RNase P RNA component class A
NZ_PYJX01000047.1	cmsearch	exon	109485	109859	.	-	.	ID=exon-C9E96_RS04120-1;Parent=rna-C9E96_RS04120;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS04120;product=RNase P RNA component class A
NZ_PYJX01000047.1	RefSeq	gene	109892	111037	.	-	.	ID=gene-C9E96_RS04125;Name=garK;gbkey=Gene;gene=garK;gene_biotype=protein_coding;locus_tag=C9E96_RS04125;old_locus_tag=C9E96_04230
NZ_PYJX01000047.1	Protein Homology	CDS	109892	111037	.	-	0	ID=cds-WP_000706464.1;Parent=gene-C9E96_RS04125;Dbxref=GenBank:WP_000706464.1;Name=WP_000706464.1;Ontology_term=GO:0031388,GO:0008887;gbkey=CDS;gene=garK;go_function=glycerate kinase activity|0008887||IEA;go_process=organic acid phosphorylation|0031388||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462160.1;locus_tag=C9E96_RS04125;product=glycerate 2-kinase;protein_id=WP_000706464.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	111135	112025	.	-	.	ID=gene-C9E96_RS04130;Name=garR;gbkey=Gene;gene=garR;gene_biotype=protein_coding;locus_tag=C9E96_RS04130;old_locus_tag=C9E96_04235
NZ_PYJX01000047.1	Protein Homology	CDS	111135	112025	.	-	0	ID=cds-WP_000178106.1;Parent=gene-C9E96_RS04130;Dbxref=GenBank:WP_000178106.1;Name=WP_000178106.1;Ontology_term=GO:0046487,GO:0008679;gbkey=CDS;gene=garR;go_function=2-hydroxy-3-oxopropionate reductase activity|0008679||IEA;go_process=glyoxylate metabolic process|0046487||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462161.1;locus_tag=C9E96_RS04130;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_000178106.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	112051	112821	.	-	.	ID=gene-C9E96_RS04135;Name=garL;gbkey=Gene;gene=garL;gene_biotype=protein_coding;locus_tag=C9E96_RS04135;old_locus_tag=C9E96_04240
NZ_PYJX01000047.1	Protein Homology	CDS	112051	112821	.	-	0	ID=cds-WP_001057715.1;Parent=gene-C9E96_RS04135;Dbxref=GenBank:WP_001057715.1;Name=WP_001057715.1;Ontology_term=GO:0019394,GO:0008672;gbkey=CDS;gene=garL;go_function=2-dehydro-3-deoxyglucarate aldolase activity|0008672||IEA;go_process=glucarate catabolic process|0019394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462162.1;locus_tag=C9E96_RS04135;product=2-dehydro-3-deoxyglucarate aldolase;protein_id=WP_001057715.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	113351	114922	.	+	.	ID=gene-C9E96_RS04140;Name=garD;gbkey=Gene;gene=garD;gene_biotype=protein_coding;locus_tag=C9E96_RS04140;old_locus_tag=C9E96_04245
NZ_PYJX01000047.1	Protein Homology	CDS	113351	114922	.	+	0	ID=cds-WP_001273722.1;Parent=gene-C9E96_RS04140;Dbxref=GenBank:WP_001273722.1;Name=WP_001273722.1;Ontology_term=GO:0046392,GO:0008867;gbkey=CDS;gene=garD;go_function=galactarate dehydratase activity|0008867||IEA;go_process=galactarate catabolic process|0046392||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462163.1;locus_tag=C9E96_RS04140;product=galactarate dehydratase;protein_id=WP_001273722.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	115180	116034	.	+	.	ID=gene-C9E96_RS04145;Name=C9E96_RS04145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04145;old_locus_tag=C9E96_04250
NZ_PYJX01000047.1	Protein Homology	CDS	115180	116034	.	+	0	ID=cds-WP_023994021.1;Parent=gene-C9E96_RS04145;Dbxref=GenBank:WP_023994021.1;Name=WP_023994021.1;Ontology_term=GO:0005975,GO:0008270,GO:0009025;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,tagatose-bisphosphate aldolase activity|0009025||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462166.1;locus_tag=C9E96_RS04145;product=tagatose bisphosphate family class II aldolase;protein_id=WP_023994021.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	116154	117425	.	+	.	ID=gene-C9E96_RS04150;Name=gatZ;gbkey=Gene;gene=gatZ;gene_biotype=protein_coding;locus_tag=C9E96_RS04150;old_locus_tag=C9E96_04255
NZ_PYJX01000047.1	Protein Homology	CDS	116154	117425	.	+	0	ID=cds-WP_023994020.1;Parent=gene-C9E96_RS04150;Dbxref=GenBank:WP_023994020.1;Name=WP_023994020.1;gbkey=CDS;gene=gatZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462170.1;locus_tag=C9E96_RS04150;product=tagatose-bisphosphate aldolase subunit GatZ;protein_id=WP_023994020.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	117440	117904	.	+	.	ID=gene-C9E96_RS04155;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=C9E96_RS04155;old_locus_tag=C9E96_04260
NZ_PYJX01000047.1	Protein Homology	CDS	117440	117904	.	+	0	ID=cds-WP_000080445.1;Parent=gene-C9E96_RS04155;Dbxref=GenBank:WP_000080445.1;Name=WP_000080445.1;gbkey=CDS;gene=gatA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462171.1;locus_tag=C9E96_RS04155;product=PTS galactitol transporter subunit IIA;protein_id=WP_000080445.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	117935	118219	.	+	.	ID=gene-C9E96_RS04160;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=C9E96_RS04160;old_locus_tag=C9E96_04265
NZ_PYJX01000047.1	Protein Homology	CDS	117935	118219	.	+	0	ID=cds-WP_000824293.1;Parent=gene-C9E96_RS04160;Dbxref=GenBank:WP_000824293.1;Name=WP_000824293.1;gbkey=CDS;gene=gatB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462172.1;locus_tag=C9E96_RS04160;product=PTS galactitol transporter subunit IIB;protein_id=WP_000824293.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	118223	119596	.	+	.	ID=gene-C9E96_RS04165;Name=C9E96_RS04165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04165;old_locus_tag=C9E96_04270
NZ_PYJX01000047.1	Protein Homology	CDS	118223	119596	.	+	0	ID=cds-WP_000490601.1;Parent=gene-C9E96_RS04165;Dbxref=GenBank:WP_000490601.1;Name=WP_000490601.1;Ontology_term=GO:0009401,GO:0015796,GO:0015577,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=galactitol transmembrane transporter activity|0015577||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,galactitol transmembrane transport|0015796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462173.1;locus_tag=C9E96_RS04165;product=galactitol-specific PTS transporter subunit IIC;protein_id=WP_000490601.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	119640	120683	.	+	.	ID=gene-C9E96_RS04170;Name=gatD;gbkey=Gene;gene=gatD;gene_biotype=protein_coding;locus_tag=C9E96_RS04170;old_locus_tag=C9E96_04275
NZ_PYJX01000047.1	Protein Homology	CDS	119640	120683	.	+	0	ID=cds-WP_000844174.1;Parent=gene-C9E96_RS04170;Dbxref=GenBank:WP_000844174.1;Name=WP_000844174.1;Ontology_term=GO:0008270,GO:0016491;gbkey=CDS;gene=gatD;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462174.1;locus_tag=C9E96_RS04170;product=galactitol-1-phosphate 5-dehydrogenase;protein_id=WP_000844174.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	120794	121567	.	+	.	ID=gene-C9E96_RS04175;Name=C9E96_RS04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04175;old_locus_tag=C9E96_04280
NZ_PYJX01000047.1	Protein Homology	CDS	120794	121567	.	+	0	ID=cds-WP_001083899.1;Parent=gene-C9E96_RS04175;Dbxref=GenBank:WP_001083899.1;Name=WP_001083899.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462175.1;locus_tag=C9E96_RS04175;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_001083899.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	121725	122588	.	-	.	ID=gene-C9E96_RS04180;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=C9E96_RS04180;old_locus_tag=C9E96_04285
NZ_PYJX01000047.1	Protein Homology	CDS	121725	122588	.	-	0	ID=cds-WP_000812288.1;Parent=gene-C9E96_RS04180;Dbxref=GenBank:WP_000812288.1;Name=WP_000812288.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rsmI;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462176.1;locus_tag=C9E96_RS04180;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_000812288.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	122652	124694	.	+	.	ID=gene-C9E96_RS04185;Name=C9E96_RS04185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04185;old_locus_tag=C9E96_04290
NZ_PYJX01000047.1	Protein Homology	CDS	122652	124694	.	+	0	ID=cds-WP_135493863.1;Parent=gene-C9E96_RS04185;Dbxref=GenBank:WP_135493863.1;Name=WP_135493863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462177.1;locus_tag=C9E96_RS04185;product=penicillin-binding protein activator;protein_id=WP_135493863.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	124652	125047	.	+	.	ID=gene-C9E96_RS04190;Name=C9E96_RS04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04190;old_locus_tag=C9E96_04295
NZ_PYJX01000047.1	Protein Homology	CDS	124652	125047	.	+	0	ID=cds-WP_023994019.1;Parent=gene-C9E96_RS04190;Dbxref=GenBank:WP_023994019.1;Name=WP_023994019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462178.1;locus_tag=C9E96_RS04190;product=YraN family protein;protein_id=WP_023994019.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	125069	125659	.	+	.	ID=gene-C9E96_RS04195;Name=diaA;gbkey=Gene;gene=diaA;gene_biotype=protein_coding;locus_tag=C9E96_RS04195;old_locus_tag=C9E96_04300
NZ_PYJX01000047.1	Protein Homology	CDS	125069	125659	.	+	0	ID=cds-WP_000893481.1;Parent=gene-C9E96_RS04195;Dbxref=GenBank:WP_000893481.1;Name=WP_000893481.1;gbkey=CDS;gene=diaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462179.1;locus_tag=C9E96_RS04195;product=DnaA initiator-associating protein DiaA;protein_id=WP_000893481.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	125669	126244	.	+	.	ID=gene-C9E96_RS04200;Name=dolP;gbkey=Gene;gene=dolP;gene_biotype=protein_coding;locus_tag=C9E96_RS04200;old_locus_tag=C9E96_04305
NZ_PYJX01000047.1	Protein Homology	CDS	125669	126244	.	+	0	ID=cds-WP_000643280.1;Parent=gene-C9E96_RS04200;Dbxref=GenBank:WP_000643280.1;Name=WP_000643280.1;Ontology_term=GO:0006970;gbkey=CDS;gene=dolP;go_process=response to osmotic stress|0006970||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462180.1;locus_tag=C9E96_RS04200;product=division/outer membrane stress-associated lipid-binding lipoprotein;protein_id=WP_000643280.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	126311	126946	.	-	.	ID=gene-C9E96_RS04205;Name=C9E96_RS04205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04205;old_locus_tag=C9E96_04310
NZ_PYJX01000047.1	Protein Homology	CDS	126311	126946	.	-	0	ID=cds-WP_023994018.1;Parent=gene-C9E96_RS04205;Dbxref=GenBank:WP_023994018.1;Name=WP_023994018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000084527.1;locus_tag=C9E96_RS04205;product=NAD(P)H-binding protein;protein_id=WP_023994018.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	127077	127595	.	+	.	ID=gene-C9E96_RS04210;Name=C9E96_RS04210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04210;old_locus_tag=C9E96_04315
NZ_PYJX01000047.1	Protein Homology	CDS	127077	127595	.	+	0	ID=cds-WP_135493865.1;Parent=gene-C9E96_RS04210;Dbxref=GenBank:WP_135493865.1;Name=WP_135493865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462182.1;locus_tag=C9E96_RS04210;product=type 1 glutamine amidotransferase domain-containing protein;protein_id=WP_135493865.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	127575	128018	.	-	.	ID=gene-C9E96_RS04215;Name=C9E96_RS04215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04215;old_locus_tag=C9E96_04320
NZ_PYJX01000047.1	Protein Homology	CDS	127575	128018	.	-	0	ID=cds-WP_135493867.1;Parent=gene-C9E96_RS04215;Dbxref=GenBank:WP_135493867.1;Name=WP_135493867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462183.1;locus_tag=C9E96_RS04215;product=YhbP family protein;protein_id=WP_135493867.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	128056	128373	.	+	.	ID=gene-C9E96_RS04220;Name=C9E96_RS04220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04220;old_locus_tag=C9E96_04325
NZ_PYJX01000047.1	Protein Homology	CDS	128056	128373	.	+	0	ID=cds-WP_000928379.1;Parent=gene-C9E96_RS04220;Dbxref=GenBank:WP_000928379.1;Name=WP_000928379.1;Ontology_term=GO:0004518;gbkey=CDS;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462184.3;locus_tag=C9E96_RS04220;product=GIY-YIG nuclease family protein;protein_id=WP_000928379.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	128360	128863	.	-	.	ID=gene-C9E96_RS04225;Name=C9E96_RS04225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04225;old_locus_tag=C9E96_04330
NZ_PYJX01000047.1	Protein Homology	CDS	128360	128863	.	-	0	ID=cds-WP_000908562.1;Parent=gene-C9E96_RS04225;Dbxref=GenBank:WP_000908562.1;Name=WP_000908562.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462185.1;locus_tag=C9E96_RS04225;product=GNAT family N-acetyltransferase;protein_id=WP_000908562.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	128857	129381	.	-	.	ID=gene-C9E96_RS04230;Name=ubiT;gbkey=Gene;gene=ubiT;gene_biotype=protein_coding;locus_tag=C9E96_RS04230;old_locus_tag=C9E96_04335
NZ_PYJX01000047.1	Protein Homology	CDS	128857	129381	.	-	0	ID=cds-WP_000884721.1;Parent=gene-C9E96_RS04230;Dbxref=GenBank:WP_000884721.1;Name=WP_000884721.1;Ontology_term=GO:0006744,GO:0110142;gbkey=CDS;gene=ubiT;go_component=ubiquinone biosynthesis complex|0110142||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462186.1;locus_tag=C9E96_RS04230;product=ubiquinone anaerobic biosynthesis accessory factor UbiT;protein_id=WP_000884721.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	129598	130593	.	+	.	ID=gene-C9E96_RS04235;Name=ubiU;gbkey=Gene;gene=ubiU;gene_biotype=protein_coding;locus_tag=C9E96_RS04235;old_locus_tag=C9E96_04340
NZ_PYJX01000047.1	Protein Homology	CDS	129598	130593	.	+	0	ID=cds-WP_000421309.1;Parent=gene-C9E96_RS04235;Dbxref=GenBank:WP_000421309.1;Name=WP_000421309.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiU;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017457364.1;locus_tag=C9E96_RS04235;product=ubiquinone anaerobic biosynthesis protein UbiU;protein_id=WP_000421309.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	130602	131480	.	+	.	ID=gene-C9E96_RS04240;Name=C9E96_RS04240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04240;old_locus_tag=C9E96_04345
NZ_PYJX01000047.1	Protein Homology	CDS	130602	131480	.	+	0	ID=cds-WP_023994017.1;Parent=gene-C9E96_RS04240;Dbxref=GenBank:WP_023994017.1;Name=WP_023994017.1;Ontology_term=GO:0006744;gbkey=CDS;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312067.2;locus_tag=C9E96_RS04240;product=U32 family peptidase;protein_id=WP_023994017.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	131658	132665	.	+	.	ID=gene-C9E96_RS04245;Name=C9E96_RS04245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04245;old_locus_tag=C9E96_04350
NZ_PYJX01000047.1	Protein Homology	CDS	131658	132665	.	+	0	ID=cds-WP_023994016.1;Parent=gene-C9E96_RS04245;Dbxref=GenBank:WP_023994016.1;Name=WP_023994016.1;Ontology_term=GO:0016705;gbkey=CDS;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen|0016705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462189.1;locus_tag=C9E96_RS04245;product=luciferase-like monooxygenase;protein_id=WP_023994016.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	132754	133998	.	-	.	ID=gene-C9E96_RS04250;Name=mtr;gbkey=Gene;gene=mtr;gene_biotype=protein_coding;locus_tag=C9E96_RS04250;old_locus_tag=C9E96_04355
NZ_PYJX01000047.1	Protein Homology	CDS	132754	133998	.	-	0	ID=cds-WP_080203817.1;Parent=gene-C9E96_RS04250;Dbxref=GenBank:WP_080203817.1;Name=WP_080203817.1;Ontology_term=GO:0015801,GO:0015173,GO:0005886;gbkey=CDS;gene=mtr;go_component=plasma membrane|0005886||IEA;go_function=aromatic amino acid transmembrane transporter activity|0015173||IEA;go_process=aromatic amino acid transport|0015801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462192.1;locus_tag=C9E96_RS04250;product=tryptophan permease;protein_id=WP_080203817.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	134152	136041	.	-	.	ID=gene-C9E96_RS04255;Name=deaD;gbkey=Gene;gene=deaD;gene_biotype=protein_coding;locus_tag=C9E96_RS04255;old_locus_tag=C9E96_04360
NZ_PYJX01000047.1	Protein Homology	CDS	134152	136041	.	-	0	ID=cds-WP_000807248.1;Parent=gene-C9E96_RS04255;Dbxref=GenBank:WP_000807248.1;Name=WP_000807248.1;gbkey=CDS;gene=deaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312070.2;locus_tag=C9E96_RS04255;product=ATP-dependent RNA helicase DeaD;protein_id=WP_000807248.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	136034	136114	.	-	.	ID=gene-C9E96_RS04260;Name=yrbN;gbkey=Gene;gene=yrbN;gene_biotype=protein_coding;locus_tag=C9E96_RS04260
NZ_PYJX01000047.1	Protein Homology	CDS	136034	136114	.	-	0	ID=cds-WP_010723222.1;Parent=gene-C9E96_RS04260;Dbxref=GenBank:WP_010723222.1;Name=WP_010723222.1;gbkey=CDS;gene=yrbN;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791258.1;locus_tag=C9E96_RS04260;product=protein YrbN;protein_id=WP_010723222.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	136220	137104	.	-	.	ID=gene-C9E96_RS04265;Name=nlpI;gbkey=Gene;gene=nlpI;gene_biotype=protein_coding;locus_tag=C9E96_RS04265;old_locus_tag=C9E96_04365
NZ_PYJX01000047.1	Protein Homology	CDS	136220	137104	.	-	0	ID=cds-WP_000802069.1;Parent=gene-C9E96_RS04265;Dbxref=GenBank:WP_000802069.1;Name=WP_000802069.1;Ontology_term=GO:0005515;gbkey=CDS;gene=nlpI;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020802045.1;locus_tag=C9E96_RS04265;product=lipoprotein NlpI;protein_id=WP_000802069.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	137214	139349	.	-	.	ID=gene-C9E96_RS04270;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=C9E96_RS04270;old_locus_tag=C9E96_04370
NZ_PYJX01000047.1	Protein Homology	CDS	137214	139349	.	-	0	ID=cds-WP_001670767.1;Parent=gene-C9E96_RS04270;Dbxref=GenBank:WP_001670767.1;Name=WP_001670767.1;Ontology_term=GO:0006402,GO:0003723,GO:0004654;gbkey=CDS;gene=pnp;go_function=RNA binding|0003723||IEA,polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462195.1;locus_tag=C9E96_RS04270;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_001670767.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	139591	139860	.	-	.	ID=gene-C9E96_RS04275;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=C9E96_RS04275;old_locus_tag=C9E96_04375
NZ_PYJX01000047.1	Protein Homology	CDS	139591	139860	.	-	0	ID=cds-WP_000059465.1;Parent=gene-C9E96_RS04275;Dbxref=GenBank:WP_000059465.1;Name=WP_000059465.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1;locus_tag=C9E96_RS04275;product=30S ribosomal protein S15;protein_id=WP_000059465.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	140011	140955	.	-	.	ID=gene-C9E96_RS04280;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=C9E96_RS04280;old_locus_tag=C9E96_04380
NZ_PYJX01000047.1	Protein Homology	CDS	140011	140955	.	-	0	ID=cds-WP_080203816.1;Parent=gene-C9E96_RS04280;Dbxref=GenBank:WP_080203816.1;Name=WP_080203816.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462197.1;locus_tag=C9E96_RS04280;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_080203816.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	140955	141356	.	-	.	ID=gene-C9E96_RS04285;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=C9E96_RS04285;old_locus_tag=C9E96_04385
NZ_PYJX01000047.1	Protein Homology	CDS	140955	141356	.	-	0	ID=cds-WP_001040199.1;Parent=gene-C9E96_RS04285;Dbxref=GenBank:WP_001040199.1;Name=WP_001040199.1;Ontology_term=GO:0006364;gbkey=CDS;gene=rbfA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001712908.1;locus_tag=C9E96_RS04285;product=30S ribosome-binding factor RbfA;protein_id=WP_001040199.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	141577	144255	.	-	.	ID=gene-C9E96_RS04290;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=C9E96_RS04290;old_locus_tag=C9E96_04390
NZ_PYJX01000047.1	Protein Homology	CDS	141577	144255	.	-	0	ID=cds-WP_000133064.1;Parent=gene-C9E96_RS04290;Dbxref=GenBank:WP_000133064.1;Name=WP_000133064.1;Ontology_term=GO:0006413,GO:0003743,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462199.1;locus_tag=C9E96_RS04290;product=translation initiation factor IF-2;protein_id=WP_000133064.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	144280	145782	.	-	.	ID=gene-C9E96_RS04295;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=C9E96_RS04295;old_locus_tag=C9E96_04395
NZ_PYJX01000047.1	Protein Homology	CDS	144280	145782	.	-	0	ID=cds-WP_135493869.1;Parent=gene-C9E96_RS04295;Dbxref=GenBank:WP_135493869.1;Name=WP_135493869.1;Ontology_term=GO:0006353,GO:0003723;gbkey=CDS;gene=nusA;go_function=RNA binding|0003723||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005131833.1;locus_tag=C9E96_RS04295;product=transcription termination factor NusA;protein_id=WP_135493869.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	145810	146262	.	-	.	ID=gene-C9E96_RS04300;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=C9E96_RS04300;old_locus_tag=C9E96_04400
NZ_PYJX01000047.1	Protein Homology	CDS	145810	146262	.	-	0	ID=cds-WP_000105461.1;Parent=gene-C9E96_RS04300;Dbxref=GenBank:WP_000105461.1;Name=WP_000105461.1;Ontology_term=GO:0042274;gbkey=CDS;gene=rimP;go_process=ribosomal small subunit biogenesis|0042274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004125659.1;locus_tag=C9E96_RS04300;product=ribosome maturation factor RimP;protein_id=WP_000105461.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	146470	146546	.	-	.	ID=gene-C9E96_RS04305;Name=C9E96_RS04305;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS04305;old_locus_tag=C9E96_04405
NZ_PYJX01000047.1	tRNAscan-SE	tRNA	146470	146546	.	-	.	ID=rna-C9E96_RS04305;Parent=gene-C9E96_RS04305;anticodon=(pos:complement(146510..146512));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04305;product=tRNA-Met
NZ_PYJX01000047.1	tRNAscan-SE	exon	146470	146546	.	-	.	ID=exon-C9E96_RS04305-1;Parent=rna-C9E96_RS04305;anticodon=(pos:complement(146510..146512));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04305;product=tRNA-Met
NZ_PYJX01000047.1	RefSeq	gene	146890	148233	.	+	.	ID=gene-C9E96_RS04310;Name=argG;gbkey=Gene;gene=argG;gene_biotype=protein_coding;locus_tag=C9E96_RS04310;old_locus_tag=C9E96_04410
NZ_PYJX01000047.1	Protein Homology	CDS	146890	148233	.	+	0	ID=cds-WP_000207645.1;Parent=gene-C9E96_RS04310;Dbxref=GenBank:WP_000207645.1;Name=WP_000207645.1;Ontology_term=GO:0006526,GO:0004055,GO:0005524,GO:0042803;gbkey=CDS;gene=argG;go_function=argininosuccinate synthase activity|0004055||IEA,ATP binding|0005524||IEA,protein homodimerization activity|0042803||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417640.1;locus_tag=C9E96_RS04310;product=argininosuccinate synthase;protein_id=WP_000207645.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	148431	148517	.	-	.	ID=gene-C9E96_RS04315;Name=C9E96_RS04315;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS04315;old_locus_tag=C9E96_04415
NZ_PYJX01000047.1	tRNAscan-SE	tRNA	148431	148517	.	-	.	ID=rna-C9E96_RS04315;Parent=gene-C9E96_RS04315;anticodon=(pos:complement(148481..148483));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04315;product=tRNA-Leu
NZ_PYJX01000047.1	tRNAscan-SE	exon	148431	148517	.	-	.	ID=exon-C9E96_RS04315-1;Parent=rna-C9E96_RS04315;anticodon=(pos:complement(148481..148483));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04315;product=tRNA-Leu
NZ_PYJX01000047.1	RefSeq	gene	148531	148863	.	-	.	ID=gene-C9E96_RS04320;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=C9E96_RS04320;old_locus_tag=C9E96_04420
NZ_PYJX01000047.1	Protein Homology	CDS	148531	148863	.	-	0	ID=cds-WP_000272680.1;Parent=gene-C9E96_RS04320;Dbxref=GenBank:WP_000272680.1;Name=WP_000272680.1;Ontology_term=GO:0015739,GO:0015136,GO:0016020;gbkey=CDS;gene=secG;go_component=membrane|0016020||IEA;go_function=sialic acid transmembrane transporter activity|0015136||IEA;go_process=sialic acid transport|0015739||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462204.1;locus_tag=C9E96_RS04320;product=preprotein translocase subunit SecG;protein_id=WP_000272680.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	149086	150423	.	-	.	ID=gene-C9E96_RS04325;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=C9E96_RS04325;old_locus_tag=C9E96_04425
NZ_PYJX01000047.1	Protein Homology	CDS	149086	150423	.	-	0	ID=cds-WP_080203815.1;Parent=gene-C9E96_RS04325;Dbxref=GenBank:WP_080203815.1;Name=WP_080203815.1;Ontology_term=GO:0005975,GO:0000287,GO:0008966,GO:0016868;gbkey=CDS;gene=glmM;go_function=magnesium ion binding|0000287||IEA,phosphoglucosamine mutase activity|0008966||IEA,intramolecular phosphotransferase activity|0016868||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462205.1;locus_tag=C9E96_RS04325;product=phosphoglucosamine mutase;protein_id=WP_080203815.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	150416	151264	.	-	.	ID=gene-C9E96_RS04330;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=C9E96_RS04330;old_locus_tag=C9E96_04430
NZ_PYJX01000047.1	Protein Homology	CDS	150416	151264	.	-	0	ID=cds-WP_080203814.1;Parent=gene-C9E96_RS04330;Dbxref=GenBank:WP_080203814.1;Name=WP_080203814.1;Ontology_term=GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462206.1;locus_tag=C9E96_RS04330;product=dihydropteroate synthase;protein_id=WP_080203814.1;transl_table=11
NZ_PYJX01000047.1	RefSeq	gene	151369	152601	.	-	.	ID=gene-C9E96_RS04335;Name=C9E96_RS04335;end_range=152601,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04335;old_locus_tag=C9E96_04435;partial=true
NZ_PYJX01000047.1	Protein Homology	CDS	151369	152601	.	-	0	ID=cds-WP_135493871.1;Parent=gene-C9E96_RS04335;Dbxref=GenBank:WP_135493871.1;Name=WP_135493871.1;Ontology_term=GO:0005524,GO:0016887;end_range=152601,.;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014833437.1;locus_tag=C9E96_RS04335;partial=true;product=AAA family ATPase;protein_id=WP_135493871.1;transl_table=11
##sequence-region NZ_PYJX01000014.1 1 2604
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000014.1	RefSeq	region	1	2604	.	+	.	ID=NZ_PYJX01000014.1:1..2604;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000014.1	RefSeq	pseudogene	1	2552	.	-	.	ID=gene-C9E96_RS00950;Name=C9E96_RS00950;end_range=2552,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS00950;old_locus_tag=C9E96_00980;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000014.1	Protein Homology	CDS	1	2552	.	-	0	ID=cds-C9E96_RS00950;Parent=gene-C9E96_RS00950;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2552,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462381.1;locus_tag=C9E96_RS00950;partial=true;product=autotransporter adhesin BigA;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000107.1 1 2548
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000107.1	RefSeq	region	1	2548	.	+	.	ID=NZ_PYJX01000107.1:1..2548;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000107.1	RefSeq	gene	102	1274	.	-	.	ID=gene-C9E96_RS09105;Name=cgtA;gbkey=Gene;gene=cgtA;gene_biotype=protein_coding;locus_tag=C9E96_RS09105;old_locus_tag=C9E96_09290
NZ_PYJX01000107.1	Protein Homology	CDS	102	1274	.	-	0	ID=cds-WP_000673556.1;Parent=gene-C9E96_RS09105;Dbxref=GenBank:WP_000673556.1;Name=WP_000673556.1;Ontology_term=GO:0000287,GO:0003924,GO:0005525;gbkey=CDS;gene=cgtA;go_function=magnesium ion binding|0000287||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462212.1;locus_tag=C9E96_RS09105;product=Obg family GTPase CgtA;protein_id=WP_000673556.1;transl_table=11
NZ_PYJX01000107.1	RefSeq	gene	1290	2255	.	-	.	ID=gene-C9E96_RS09110;Name=C9E96_RS09110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09110;old_locus_tag=C9E96_09295
NZ_PYJX01000107.1	Protein Homology	CDS	1290	2255	.	-	0	ID=cds-WP_000813052.1;Parent=gene-C9E96_RS09110;Dbxref=GenBank:WP_000813052.1;Name=WP_000813052.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012135318.1;locus_tag=C9E96_RS09110;product=DMT family transporter;protein_id=WP_000813052.1;transl_table=11
NZ_PYJX01000107.1	RefSeq	gene	2385	2548	.	-	.	ID=gene-C9E96_RS09115;Name=C9E96_RS09115;end_range=2548,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09115;old_locus_tag=C9E96_09300;partial=true
NZ_PYJX01000107.1	Protein Homology	CDS	2385	2548	.	-	2	ID=cds-WP_210114522.1;Parent=gene-C9E96_RS09115;Dbxref=GenBank:WP_210114522.1;Name=WP_210114522.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;end_range=2548,.;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933559.1;locus_tag=C9E96_RS09115;partial=true;product=50S ribosomal protein L27;protein_id=WP_210114522.1;transl_table=11
##sequence-region NZ_PYJX01000060.1 1 2286
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000060.1	RefSeq	region	1	2286	.	+	.	ID=NZ_PYJX01000060.1:1..2286;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000060.1	RefSeq	gene	1	62	.	-	.	ID=gene-C9E96_RS05075;Name=C9E96_RS05075;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS05075;old_locus_tag=C9E96_05200;partial=true;start_range=.,1
NZ_PYJX01000060.1	cmsearch	rRNA	1	62	.	-	.	ID=rna-C9E96_RS05075;Parent=gene-C9E96_RS05075;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS05075;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_PYJX01000060.1	cmsearch	exon	1	62	.	-	.	ID=exon-C9E96_RS05075-1;Parent=rna-C9E96_RS05075;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS05075;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_PYJX01000060.1	RefSeq	gene	686	2286	.	+	.	ID=gene-C9E96_RS05080;Name=purH;end_range=2286,.;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=C9E96_RS05080;old_locus_tag=C9E96_05210;partial=true
NZ_PYJX01000060.1	Protein Homology	CDS	686	2286	.	+	0	ID=cds-WP_245306425.1;Parent=gene-C9E96_RS05080;Dbxref=GenBank:WP_245306425.1;Name=WP_245306425.1;Ontology_term=GO:0009152,GO:0003937,GO:0004643;end_range=2286,.;gbkey=CDS;gene=purH;go_function=IMP cyclohydrolase activity|0003937||IEA,phosphoribosylaminoimidazolecarboxamide formyltransferase activity|0004643||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132841.1;locus_tag=C9E96_RS05080;partial=true;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=WP_245306425.1;transl_table=11
##sequence-region NZ_PYJX01000105.1 1 1676
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000105.1	RefSeq	region	1	1676	.	+	.	ID=NZ_PYJX01000105.1:1..1676;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000105.1	RefSeq	gene	1	288	.	+	.	ID=gene-C9E96_RS08900;Name=C9E96_RS08900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08900;old_locus_tag=C9E96_09090;partial=true;start_range=.,1
NZ_PYJX01000105.1	Protein Homology	CDS	1	288	.	+	0	ID=cds-WP_280951891.1;Parent=gene-C9E96_RS08900;Dbxref=GenBank:WP_280951891.1;Name=WP_280951891.1;Ontology_term=GO:0043565;gbkey=CDS;go_function=sequence-specific DNA binding|0043565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463043.1;locus_tag=C9E96_RS08900;partial=true;product=helix-turn-helix domain-containing protein;protein_id=WP_280951891.1;start_range=.,1;transl_table=11
NZ_PYJX01000105.1	RefSeq	gene	285	1574	.	-	.	ID=gene-C9E96_RS08905;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=C9E96_RS08905;old_locus_tag=C9E96_09095
NZ_PYJX01000105.1	Protein Homology	CDS	285	1574	.	-	0	ID=cds-WP_023993915.1;Parent=gene-C9E96_RS08905;Dbxref=GenBank:WP_023993915.1;Name=WP_023993915.1;Ontology_term=GO:0009113,GO:0004637;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463044.1;locus_tag=C9E96_RS08905;product=phosphoribosylamine--glycine ligase;protein_id=WP_023993915.1;transl_table=11
##sequence-region NZ_PYJX01000194.1 1 1618
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000194.1	RefSeq	region	1	1618	.	+	.	ID=NZ_PYJX01000194.1:1..1618;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000194.1	RefSeq	gene	1	1618	.	-	.	ID=gene-C9E96_RS19515;Name=C9E96_RS19515;end_range=1618,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS19515;old_locus_tag=C9E96_20030;partial=true;start_range=.,1
NZ_PYJX01000194.1	cmsearch	rRNA	1	1618	.	-	.	ID=rna-C9E96_RS19515;Parent=gene-C9E96_RS19515;Dbxref=RFAM:RF02541;end_range=1618,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS19515;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000194.1	cmsearch	exon	1	1618	.	-	.	ID=exon-C9E96_RS19515-1;Parent=rna-C9E96_RS19515;Dbxref=RFAM:RF02541;end_range=1618,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS19515;partial=true;product=23S ribosomal RNA;start_range=.,1
##sequence-region NZ_PYJX01000134.1 1 1606
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000134.1	RefSeq	region	1	1606	.	+	.	ID=NZ_PYJX01000134.1:1..1606;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000134.1	RefSeq	gene	16	1557	.	+	.	ID=gene-C9E96_RS11170;Name=C9E96_RS11170;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS11170;old_locus_tag=C9E96_11445
NZ_PYJX01000134.1	cmsearch	rRNA	16	1557	.	+	.	ID=rna-C9E96_RS11170;Parent=gene-C9E96_RS11170;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS11170;product=16S ribosomal RNA
NZ_PYJX01000134.1	cmsearch	exon	16	1557	.	+	.	ID=exon-C9E96_RS11170-1;Parent=rna-C9E96_RS11170;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS11170;product=16S ribosomal RNA
##sequence-region NZ_PYJX01000057.1 1 1591
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000057.1	RefSeq	region	1	1591	.	+	.	ID=NZ_PYJX01000057.1:1..1591;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000057.1	RefSeq	gene	1	209	.	+	.	ID=gene-C9E96_RS04920;Name=C9E96_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04920;old_locus_tag=C9E96_05035;partial=true;start_range=.,1
NZ_PYJX01000057.1	Protein Homology	CDS	1	209	.	+	2	ID=cds-WP_135493904.1;Parent=gene-C9E96_RS04920;Dbxref=GenBank:WP_135493904.1;Name=WP_135493904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460825.1;locus_tag=C9E96_RS04920;partial=true;product=DUF2514 family protein;protein_id=WP_135493904.1;start_range=.,1;transl_table=11
NZ_PYJX01000057.1	RefSeq	gene	466	633	.	-	.	ID=gene-C9E96_RS04925;Name=C9E96_RS04925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04925;old_locus_tag=C9E96_05040
NZ_PYJX01000057.1	Protein Homology	CDS	466	633	.	-	0	ID=cds-WP_000789530.1;Parent=gene-C9E96_RS04925;Dbxref=GenBank:WP_000789530.1;Name=WP_000789530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460824.1;locus_tag=C9E96_RS04925;product=lytic enzyme;protein_id=WP_000789530.1;transl_table=11
NZ_PYJX01000057.1	RefSeq	gene	698	886	.	-	.	ID=gene-C9E96_RS04930;Name=C9E96_RS04930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04930;old_locus_tag=C9E96_05045
NZ_PYJX01000057.1	Protein Homology	CDS	698	886	.	-	0	ID=cds-WP_001034748.1;Parent=gene-C9E96_RS04930;Dbxref=GenBank:WP_001034748.1;Name=WP_001034748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001537366.1;locus_tag=C9E96_RS04930;product=hypothetical protein;protein_id=WP_001034748.1;transl_table=11
NZ_PYJX01000057.1	RefSeq	pseudogene	941	1201	.	+	.	ID=gene-C9E96_RS04935;Name=C9E96_RS04935;end_range=1201,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS04935;old_locus_tag=C9E96_05050;partial=true;pseudo=true
NZ_PYJX01000057.1	Protein Homology	CDS	941	1201	.	+	0	ID=cds-C9E96_RS04935;Parent=gene-C9E96_RS04935;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1201,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459886.1;locus_tag=C9E96_RS04935;partial=true;product=DUF1441 family protein;pseudo=true;transl_table=11
NZ_PYJX01000057.1	RefSeq	pseudogene	1194	1418	.	+	.	ID=gene-C9E96_RS24150;Name=C9E96_RS24150;end_range=1418,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24150;partial=true;pseudo=true;start_range=.,1194
NZ_PYJX01000057.1	Protein Homology	CDS	1194	1418	.	+	0	ID=cds-C9E96_RS24150;Parent=gene-C9E96_RS24150;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1418,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460024.1;locus_tag=C9E96_RS24150;partial=true;product=tail fiber protein;pseudo=true;start_range=.,1194;transl_table=11
NZ_PYJX01000057.1	RefSeq	pseudogene	1410	1591	.	+	.	ID=gene-C9E96_RS04940;Name=C9E96_RS04940;end_range=1591,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS04940;old_locus_tag=C9E96_05055;partial=true;pseudo=true;start_range=.,1410
NZ_PYJX01000057.1	Protein Homology	CDS	1410	1591	.	+	0	ID=cds-C9E96_RS04940;Parent=gene-C9E96_RS04940;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1591,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461523.1;locus_tag=C9E96_RS04940;partial=true;product=macro domain-containing protein;pseudo=true;start_range=.,1410;transl_table=11
##sequence-region NZ_PYJX01000023.1 1 1312
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000023.1	RefSeq	region	1	1312	.	+	.	ID=NZ_PYJX01000023.1:1..1312;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000023.1	RefSeq	gene	54	1309	.	+	.	ID=gene-C9E96_RS01370;Name=C9E96_RS01370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01370;old_locus_tag=C9E96_01400
NZ_PYJX01000023.1	Protein Homology	CDS	54	405	.	+	0	ID=cds-WP_135493753.1;Parent=gene-C9E96_RS01370;Dbxref=GenBank:WP_135493753.1;Name=WP_135493753.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611657.1;locus_tag=C9E96_RS01370;product=IS3-like element ISSen1 family transposase;protein_id=WP_135493753.1;transl_table=11
NZ_PYJX01000023.1	Protein Homology	CDS	405	1309	.	+	2	ID=cds-WP_135493753.1;Parent=gene-C9E96_RS01370;Dbxref=GenBank:WP_135493753.1;Name=WP_135493753.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611657.1;locus_tag=C9E96_RS01370;product=IS3-like element ISSen1 family transposase;protein_id=WP_135493753.1;transl_table=11
##sequence-region NZ_PYJX01000055.1 1 1244
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000055.1	RefSeq	region	1	1244	.	+	.	ID=NZ_PYJX01000055.1:1..1244;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000055.1	RefSeq	gene	98	1244	.	-	.	ID=gene-C9E96_RS04875;Name=C9E96_RS04875;end_range=1244,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04875;old_locus_tag=C9E96_04990;partial=true
NZ_PYJX01000055.1	Protein Homology	CDS	98	1244	.	-	1	ID=cds-WP_167852882.1;Parent=gene-C9E96_RS04875;Dbxref=GenBank:WP_167852882.1;Name=WP_167852882.1;Ontology_term=GO:0008483,GO:0030170;end_range=1244,.;gbkey=CDS;go_function=transaminase activity|0008483||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009653304.1;locus_tag=C9E96_RS04875;partial=true;product=amino acid aminotransferase;protein_id=WP_167852882.1;transl_table=11
##sequence-region NZ_PYJX01000097.1 1 1232
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000097.1	RefSeq	region	1	1232	.	+	.	ID=NZ_PYJX01000097.1:1..1232;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000097.1	RefSeq	gene	38	400	.	+	.	ID=gene-C9E96_RS08415;Name=C9E96_RS08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08415;old_locus_tag=C9E96_08605
NZ_PYJX01000097.1	Protein Homology	CDS	38	400	.	+	0	ID=cds-WP_000915523.1;Parent=gene-C9E96_RS08415;Dbxref=GenBank:WP_000915523.1;Name=WP_000915523.1;Ontology_term=GO:0000271,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459552.1;locus_tag=C9E96_RS08415;product=GtrA family protein;protein_id=WP_000915523.1;transl_table=11
NZ_PYJX01000097.1	RefSeq	gene	397	1232	.	+	.	ID=gene-C9E96_RS08420;Name=C9E96_RS08420;end_range=1232,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08420;old_locus_tag=C9E96_08610;partial=true
NZ_PYJX01000097.1	Protein Homology	CDS	397	1232	.	+	0	ID=cds-WP_023993874.1;Parent=gene-C9E96_RS08420;Dbxref=GenBank:WP_023993874.1;Name=WP_023993874.1;Ontology_term=GO:0016757;end_range=1232,.;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459551.1;locus_tag=C9E96_RS08420;partial=true;product=glycosyltransferase family 2 protein;protein_id=WP_023993874.1;transl_table=11
##sequence-region NZ_PYJX01000248.1 1 49839
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000248.1	RefSeq	region	1	49839	.	+	.	ID=NZ_PYJX01000248.1:1..49839;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000248.1	RefSeq	gene	1	402	.	+	.	ID=gene-C9E96_RS23500;Name=C9E96_RS23500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23500;old_locus_tag=C9E96_24090;partial=true;start_range=.,1
NZ_PYJX01000248.1	Protein Homology	CDS	1	402	.	+	0	ID=cds-WP_135494765.1;Parent=gene-C9E96_RS23500;Dbxref=GenBank:WP_135494765.1;Name=WP_135494765.1;Ontology_term=GO:0006094,GO:0004612,GO:0005524;gbkey=CDS;go_function=phosphoenolpyruvate carboxykinase (ATP) activity|0004612||IEA,ATP binding|0005524||IEA;go_process=gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312272.1;locus_tag=C9E96_RS23500;partial=true;product=phosphoenolpyruvate carboxykinase (ATP);protein_id=WP_135494765.1;start_range=.,1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	477	1829	.	-	.	ID=gene-C9E96_RS23505;Name=envZ;gbkey=Gene;gene=envZ;gene_biotype=protein_coding;locus_tag=C9E96_RS23505;old_locus_tag=C9E96_24095
NZ_PYJX01000248.1	Protein Homology	CDS	477	1829	.	-	0	ID=cds-WP_001253818.1;Parent=gene-C9E96_RS23505;Dbxref=GenBank:WP_001253818.1;Name=WP_001253818.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=envZ;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462404.1;locus_tag=C9E96_RS23505;product=two-component system sensor histidine kinase EnvZ;protein_id=WP_001253818.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	1826	2545	.	-	.	ID=gene-C9E96_RS23510;Name=ompR;gbkey=Gene;gene=ompR;gene_biotype=protein_coding;locus_tag=C9E96_RS23510;old_locus_tag=C9E96_24100
NZ_PYJX01000248.1	Protein Homology	CDS	1826	2545	.	-	0	ID=cds-WP_001157751.1;Parent=gene-C9E96_RS23510;Dbxref=GenBank:WP_001157751.1;Name=WP_001157751.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=ompR;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007374840.1;locus_tag=C9E96_RS23510;product=osmolarity response regulator transcription factor OmpR;protein_id=WP_001157751.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	2771	3244	.	+	.	ID=gene-C9E96_RS23515;Name=greB;gbkey=Gene;gene=greB;gene_biotype=protein_coding;locus_tag=C9E96_RS23515;old_locus_tag=C9E96_24105
NZ_PYJX01000248.1	Protein Homology	CDS	2771	3244	.	+	0	ID=cds-WP_000856695.1;Parent=gene-C9E96_RS23515;Dbxref=GenBank:WP_000856695.1;Name=WP_000856695.1;Ontology_term=GO:0032784,GO:0003677;gbkey=CDS;gene=greB;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015703675.1;locus_tag=C9E96_RS23515;product=transcription elongation factor GreB;protein_id=WP_000856695.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	3343	5673	.	+	.	ID=gene-C9E96_RS23520;Name=C9E96_RS23520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23520;old_locus_tag=C9E96_24110
NZ_PYJX01000248.1	Protein Homology	CDS	3343	5673	.	+	0	ID=cds-WP_135494768.1;Parent=gene-C9E96_RS23520;Dbxref=GenBank:WP_135494768.1;Name=WP_135494768.1;Ontology_term=GO:0003676,GO:0003729,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=nucleic acid binding|0003676||IEA,mRNA binding|0003729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312276.2;locus_tag=C9E96_RS23520;product=Tex family protein;protein_id=WP_135494768.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	6110	6337	.	+	.	ID=gene-C9E96_RS23525;Name=feoA;gbkey=Gene;gene=feoA;gene_biotype=protein_coding;locus_tag=C9E96_RS23525;old_locus_tag=C9E96_24120
NZ_PYJX01000248.1	Protein Homology	CDS	6110	6337	.	+	0	ID=cds-WP_001160955.1;Parent=gene-C9E96_RS23525;Dbxref=GenBank:WP_001160955.1;Name=WP_001160955.1;gbkey=CDS;gene=feoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462408.1;locus_tag=C9E96_RS23525;product=ferrous iron transporter A;protein_id=WP_001160955.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	6356	8674	.	+	.	ID=gene-C9E96_RS23530;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=C9E96_RS23530;old_locus_tag=C9E96_24125
NZ_PYJX01000248.1	Protein Homology	CDS	6356	8674	.	+	0	ID=cds-WP_023216665.1;Parent=gene-C9E96_RS23530;Dbxref=GenBank:WP_023216665.1;Name=WP_023216665.1;Ontology_term=GO:0006826,GO:0005525,GO:0015093,GO:0016020;gbkey=CDS;gene=feoB;go_component=membrane|0016020||IEA;go_function=GTP binding|0005525||IEA,ferrous iron transmembrane transporter activity|0015093||IEA;go_process=iron ion transport|0006826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462409.1;locus_tag=C9E96_RS23530;product=Fe(2+) transporter permease subunit FeoB;protein_id=WP_023216665.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	8687	8923	.	+	.	ID=gene-C9E96_RS23535;Name=feoC;gbkey=Gene;gene=feoC;gene_biotype=protein_coding;locus_tag=C9E96_RS23535;old_locus_tag=C9E96_24130
NZ_PYJX01000248.1	Protein Homology	CDS	8687	8923	.	+	0	ID=cds-WP_000157587.1;Parent=gene-C9E96_RS23535;Dbxref=GenBank:WP_000157587.1;Name=WP_000157587.1;gbkey=CDS;gene=feoC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462410.1;locus_tag=C9E96_RS23535;product=[Fe-S]-dependent transcriptional repressor FeoC;protein_id=WP_000157587.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	9158	10072	.	+	.	ID=gene-C9E96_RS23540;Name=C9E96_RS23540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23540;old_locus_tag=C9E96_24135
NZ_PYJX01000248.1	Protein Homology	CDS	9158	10072	.	+	0	ID=cds-WP_000235946.1;Parent=gene-C9E96_RS23540;Dbxref=GenBank:WP_000235946.1;Name=WP_000235946.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462411.1;locus_tag=C9E96_RS23540;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_000235946.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	10108	10878	.	-	.	ID=gene-C9E96_RS23545;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=C9E96_RS23545;old_locus_tag=C9E96_24140
NZ_PYJX01000248.1	Protein Homology	CDS	10108	10878	.	-	0	ID=cds-WP_000998138.1;Parent=gene-C9E96_RS23545;Dbxref=GenBank:WP_000998138.1;Name=WP_000998138.1;Ontology_term=GO:0052689;gbkey=CDS;gene=bioH;go_function=carboxylic ester hydrolase activity|0052689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462412.1;locus_tag=C9E96_RS23545;product=pimeloyl-ACP methyl ester esterase BioH;protein_id=WP_000998138.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	10916	11599	.	+	.	ID=gene-C9E96_RS23550;Name=gntX;gbkey=Gene;gene=gntX;gene_biotype=protein_coding;locus_tag=C9E96_RS23550;old_locus_tag=C9E96_24145
NZ_PYJX01000248.1	Protein Homology	CDS	10916	11599	.	+	0	ID=cds-WP_000958733.1;Parent=gene-C9E96_RS23550;Dbxref=GenBank:WP_000958733.1;Name=WP_000958733.1;Ontology_term=GO:0009116;gbkey=CDS;gene=gntX;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462413.1;locus_tag=C9E96_RS23550;product=DNA utilization protein GntX;protein_id=WP_000958733.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	11658	12233	.	+	.	ID=gene-C9E96_RS23555;Name=nfuA;gbkey=Gene;gene=nfuA;gene_biotype=protein_coding;locus_tag=C9E96_RS23555;old_locus_tag=C9E96_24150
NZ_PYJX01000248.1	Protein Homology	CDS	11658	12233	.	+	0	ID=cds-WP_000619387.1;Parent=gene-C9E96_RS23555;Dbxref=GenBank:WP_000619387.1;Name=WP_000619387.1;Ontology_term=GO:0016226,GO:0051604,GO:0051539;gbkey=CDS;gene=nfuA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA,protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016942932.1;locus_tag=C9E96_RS23555;product=Fe-S biogenesis protein NfuA;protein_id=WP_000619387.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	12607	13923	.	+	.	ID=gene-C9E96_RS23560;Name=gntT;gbkey=Gene;gene=gntT;gene_biotype=protein_coding;locus_tag=C9E96_RS23560;old_locus_tag=C9E96_24155
NZ_PYJX01000248.1	Protein Homology	CDS	12607	13923	.	+	0	ID=cds-WP_135494771.1;Parent=gene-C9E96_RS23560;Dbxref=GenBank:WP_135494771.1;Name=WP_135494771.1;gbkey=CDS;gene=gntT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462415.1;locus_tag=C9E96_RS23560;product=gluconate transporter;protein_id=WP_135494771.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	14042	16120	.	-	.	ID=gene-C9E96_RS23565;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=C9E96_RS23565;old_locus_tag=C9E96_24160
NZ_PYJX01000248.1	Protein Homology	CDS	14042	16120	.	-	0	ID=cds-WP_135494774.1;Parent=gene-C9E96_RS23565;Dbxref=GenBank:WP_135494774.1;Name=WP_135494774.1;Ontology_term=GO:0005975,GO:0004134;gbkey=CDS;gene=malQ;go_function=4-alpha-glucanotransferase activity|0004134||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462416.1;locus_tag=C9E96_RS23565;product=4-alpha-glucanotransferase;protein_id=WP_135494774.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	16130	18523	.	-	.	ID=gene-C9E96_RS23570;Name=malP;gbkey=Gene;gene=malP;gene_biotype=protein_coding;locus_tag=C9E96_RS23570;old_locus_tag=C9E96_24165
NZ_PYJX01000248.1	Protein Homology	CDS	16130	18523	.	-	0	ID=cds-WP_023249794.1;Parent=gene-C9E96_RS23570;Dbxref=GenBank:WP_023249794.1;Name=WP_023249794.1;Ontology_term=GO:0005975,GO:0008184,GO:0030170;gbkey=CDS;gene=malP;go_function=glycogen phosphorylase activity|0008184||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462417.1;locus_tag=C9E96_RS23570;product=maltodextrin phosphorylase;protein_id=WP_023249794.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	19118	21823	.	+	.	ID=gene-C9E96_RS23575;Name=malT;gbkey=Gene;gene=malT;gene_biotype=protein_coding;locus_tag=C9E96_RS23575;old_locus_tag=C9E96_24170
NZ_PYJX01000248.1	Protein Homology	CDS	19118	21823	.	+	0	ID=cds-WP_000907030.1;Parent=gene-C9E96_RS23575;Dbxref=GenBank:WP_000907030.1;Name=WP_000907030.1;Ontology_term=GO:0006355,GO:0003677,GO:0005515;gbkey=CDS;gene=malT;go_function=DNA binding|0003677||IEA,protein binding|0005515||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000907024.1;locus_tag=C9E96_RS23575;product=HTH-type transcriptional regulator MalT;protein_id=WP_000907030.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	21892	22650	.	-	.	ID=gene-C9E96_RS23580;Name=C9E96_RS23580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23580;old_locus_tag=C9E96_24175
NZ_PYJX01000248.1	Protein Homology	CDS	21892	22650	.	-	0	ID=cds-WP_000815085.1;Parent=gene-C9E96_RS23580;Dbxref=GenBank:WP_000815085.1;Name=WP_000815085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000815090.1;locus_tag=C9E96_RS23580;product=DeoR/GlpR family transcriptional regulator;protein_id=WP_000815085.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	22744	23574	.	-	.	ID=gene-C9E96_RS23585;Name=glpG;gbkey=Gene;gene=glpG;gene_biotype=protein_coding;locus_tag=C9E96_RS23585;old_locus_tag=C9E96_24180
NZ_PYJX01000248.1	Protein Homology	CDS	22744	23574	.	-	0	ID=cds-WP_000928699.1;Parent=gene-C9E96_RS23585;Dbxref=GenBank:WP_000928699.1;Name=WP_000928699.1;Ontology_term=GO:0006508,GO:0004252,GO:0016020;gbkey=CDS;gene=glpG;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462426.1;locus_tag=C9E96_RS23585;product=rhomboid family intramembrane serine protease GlpG;protein_id=WP_000928699.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	23650	23976	.	-	.	ID=gene-C9E96_RS23590;Name=glpE;gbkey=Gene;gene=glpE;gene_biotype=protein_coding;locus_tag=C9E96_RS23590;old_locus_tag=C9E96_24185
NZ_PYJX01000248.1	Protein Homology	CDS	23650	23976	.	-	0	ID=cds-WP_000434523.1;Parent=gene-C9E96_RS23590;Dbxref=GenBank:WP_000434523.1;Name=WP_000434523.1;Ontology_term=GO:0004792;gbkey=CDS;gene=glpE;go_function=thiosulfate-cyanide sulfurtransferase activity|0004792||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462427.1;locus_tag=C9E96_RS23590;product=thiosulfate sulfurtransferase GlpE;protein_id=WP_000434523.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	24175	25683	.	+	.	ID=gene-C9E96_RS23595;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=C9E96_RS23595;old_locus_tag=C9E96_24190
NZ_PYJX01000248.1	Protein Homology	CDS	24175	25683	.	+	0	ID=cds-WP_000448178.1;Parent=gene-C9E96_RS23595;Dbxref=GenBank:WP_000448178.1;Name=WP_000448178.1;Ontology_term=GO:0006072,GO:0004368,GO:0009331;gbkey=CDS;gene=glpD;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462428.1;locus_tag=C9E96_RS23595;product=glycerol-3-phosphate dehydrogenase;protein_id=WP_000448178.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	25730	26275	.	-	.	ID=gene-C9E96_RS23600;Name=C9E96_RS23600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23600;old_locus_tag=C9E96_24195
NZ_PYJX01000248.1	Protein Homology	CDS	25730	26275	.	-	0	ID=cds-WP_080203887.1;Parent=gene-C9E96_RS23600;Dbxref=GenBank:WP_080203887.1;Name=WP_080203887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462429.1;locus_tag=C9E96_RS23600;product=hypothetical protein;protein_id=WP_080203887.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	26285	27778	.	-	.	ID=gene-C9E96_RS23605;Name=C9E96_RS23605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23605;old_locus_tag=C9E96_24200
NZ_PYJX01000248.1	Protein Homology	CDS	26285	27778	.	-	0	ID=cds-WP_135369820.1;Parent=gene-C9E96_RS23605;Dbxref=GenBank:WP_135369820.1;Name=WP_135369820.1;Ontology_term=GO:0006817,GO:0022857,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=transmembrane transporter activity|0022857||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001551775.1;locus_tag=C9E96_RS23605;product=PstS family phosphate ABC transporter substrate-binding protein;protein_id=WP_135369820.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	27908	30355	.	-	.	ID=gene-C9E96_RS23610;Name=glgP;gbkey=Gene;gene=glgP;gene_biotype=protein_coding;locus_tag=C9E96_RS23610;old_locus_tag=C9E96_24205
NZ_PYJX01000248.1	Protein Homology	CDS	27908	30355	.	-	0	ID=cds-WP_000993424.1;Parent=gene-C9E96_RS23610;Dbxref=GenBank:WP_000993424.1;Name=WP_000993424.1;Ontology_term=GO:0005975,GO:0008184;gbkey=CDS;gene=glgP;go_function=glycogen phosphorylase activity|0008184||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010436446.1;locus_tag=C9E96_RS23610;product=glycogen phosphorylase;protein_id=WP_000993424.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	30375	31808	.	-	.	ID=gene-C9E96_RS23615;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=C9E96_RS23615;old_locus_tag=C9E96_24210
NZ_PYJX01000248.1	Protein Homology	CDS	30375	31808	.	-	0	ID=cds-WP_001197669.1;Parent=gene-C9E96_RS23615;Dbxref=GenBank:WP_001197669.1;Name=WP_001197669.1;Ontology_term=GO:0004373;gbkey=CDS;gene=glgA;go_function=alpha-1%2C4-glucan glucosyltransferase (UDP-glucose donor) activity|0004373||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462436.1;locus_tag=C9E96_RS23615;product=glycogen synthase GlgA;protein_id=WP_001197669.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	31808	33103	.	-	.	ID=gene-C9E96_RS23620;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;locus_tag=C9E96_RS23620;old_locus_tag=C9E96_24215
NZ_PYJX01000248.1	Protein Homology	CDS	31808	33103	.	-	0	ID=cds-WP_000253994.1;Parent=gene-C9E96_RS23620;Dbxref=GenBank:WP_000253994.1;Name=WP_000253994.1;Ontology_term=GO:0005978,GO:0008878;gbkey=CDS;gene=glgC;go_function=glucose-1-phosphate adenylyltransferase activity|0008878||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462437.1;locus_tag=C9E96_RS23620;product=glucose-1-phosphate adenylyltransferase;protein_id=WP_000253994.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	33118	35094	.	-	.	ID=gene-C9E96_RS23625;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=C9E96_RS23625;old_locus_tag=C9E96_24220
NZ_PYJX01000248.1	Protein Homology	CDS	33118	35094	.	-	0	ID=cds-WP_020437703.1;Parent=gene-C9E96_RS23625;Dbxref=GenBank:WP_020437703.1;Name=WP_020437703.1;Ontology_term=GO:0005980,GO:0120549;gbkey=CDS;gene=glgX;go_function=limit dextrin alpha-1%2C6-maltotetraose-hydrolase activity|0120549||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462438.1;locus_tag=C9E96_RS23625;product=glycogen debranching protein GlgX;protein_id=WP_020437703.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	35091	37277	.	-	.	ID=gene-C9E96_RS23630;Name=glgB;gbkey=Gene;gene=glgB;gene_biotype=protein_coding;locus_tag=C9E96_RS23630;old_locus_tag=C9E96_24225
NZ_PYJX01000248.1	Protein Homology	CDS	35091	37277	.	-	0	ID=cds-WP_135494777.1;Parent=gene-C9E96_RS23630;Dbxref=GenBank:WP_135494777.1;Name=WP_135494777.1;Ontology_term=GO:0005978,GO:0003844;gbkey=CDS;gene=glgB;go_function=1%2C4-alpha-glucan branching enzyme activity|0003844||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462439.1;locus_tag=C9E96_RS23630;product=1%2C4-alpha-glucan branching enzyme;protein_id=WP_135494777.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	37624	38730	.	-	.	ID=gene-C9E96_RS23635;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=C9E96_RS23635;old_locus_tag=C9E96_24230
NZ_PYJX01000248.1	Protein Homology	CDS	37624	38730	.	-	0	ID=cds-WP_000799940.1;Parent=gene-C9E96_RS23635;Dbxref=GenBank:WP_000799940.1;Name=WP_000799940.1;Ontology_term=GO:0009086,GO:0009088,GO:0009089,GO:0009097,GO:0004073,GO:0050661;gbkey=CDS;gene=asd;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,NADP binding|0050661||IEA;go_process=methionine biosynthetic process|0009086||IEA,threonine biosynthetic process|0009088||IEA,lysine biosynthetic process via diaminopimelate|0009089||IEA,isoleucine biosynthetic process|0009097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462440.1;locus_tag=C9E96_RS23635;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_000799940.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	pseudogene	38965	39039	.	+	.	ID=gene-C9E96_RS24600;Name=C9E96_RS24600;end_range=39039,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24600;partial=true;pseudo=true
NZ_PYJX01000248.1	Protein Homology	CDS	38965	39039	.	+	0	ID=cds-C9E96_RS24600;Parent=gene-C9E96_RS24600;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=39039,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312306.1;locus_tag=C9E96_RS24600;partial=true;product=MarC family protein;pseudo=true;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	39154	40494	.	-	.	ID=gene-C9E96_RS23645;Name=gntU;gbkey=Gene;gene=gntU;gene_biotype=protein_coding;locus_tag=C9E96_RS23645;old_locus_tag=C9E96_24240
NZ_PYJX01000248.1	Protein Homology	CDS	39154	40494	.	-	0	ID=cds-WP_000105950.1;Parent=gene-C9E96_RS23645;Dbxref=GenBank:WP_000105950.1;Name=WP_000105950.1;Ontology_term=GO:0035429,GO:0015128,GO:0016020;gbkey=CDS;gene=gntU;go_component=membrane|0016020||IEA;go_function=gluconate transmembrane transporter activity|0015128||IEA;go_process=gluconate transmembrane transport|0035429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462442.1;locus_tag=C9E96_RS23645;product=gluconate transporter;protein_id=WP_000105950.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	40491	41024	.	-	.	ID=gene-C9E96_RS23650;Name=gntK;gbkey=Gene;gene=gntK;gene_biotype=protein_coding;locus_tag=C9E96_RS23650;old_locus_tag=C9E96_24245
NZ_PYJX01000248.1	Protein Homology	CDS	40491	41024	.	-	0	ID=cds-WP_080203888.1;Parent=gene-C9E96_RS23650;Dbxref=GenBank:WP_080203888.1;Name=WP_080203888.1;gbkey=CDS;gene=gntK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462443.1;locus_tag=C9E96_RS23650;product=gluconokinase;protein_id=WP_080203888.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	41163	42158	.	-	.	ID=gene-C9E96_RS23655;Name=gntR;gbkey=Gene;gene=gntR;gene_biotype=protein_coding;locus_tag=C9E96_RS23655;old_locus_tag=C9E96_24250
NZ_PYJX01000248.1	Protein Homology	CDS	41163	42158	.	-	0	ID=cds-WP_000730238.1;Parent=gene-C9E96_RS23655;Dbxref=GenBank:WP_000730238.1;Name=WP_000730238.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=gntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001693277.1;locus_tag=C9E96_RS23655;product=gluconate operon transcriptional repressor GntR;protein_id=WP_000730238.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	42383	43078	.	-	.	ID=gene-C9E96_RS23660;Name=C9E96_RS23660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23660;old_locus_tag=C9E96_24255
NZ_PYJX01000248.1	Protein Homology	CDS	42383	43078	.	-	0	ID=cds-WP_080203889.1;Parent=gene-C9E96_RS23660;Dbxref=GenBank:WP_080203889.1;Name=WP_080203889.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004213399.1;locus_tag=C9E96_RS23660;product=pirin family protein;protein_id=WP_080203889.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	43202	44239	.	-	.	ID=gene-C9E96_RS23665;Name=C9E96_RS23665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23665;old_locus_tag=C9E96_24260
NZ_PYJX01000248.1	Protein Homology	CDS	43202	44239	.	-	0	ID=cds-WP_045902056.1;Parent=gene-C9E96_RS23665;Dbxref=GenBank:WP_045902056.1;Name=WP_045902056.1;Ontology_term=GO:0000166;gbkey=CDS;go_function=nucleotide binding|0000166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462446.1;locus_tag=C9E96_RS23665;product=oxidoreductase;protein_id=WP_045902056.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	44707	45195	.	+	.	ID=gene-C9E96_RS23670;Name=yhhY;gbkey=Gene;gene=yhhY;gene_biotype=protein_coding;locus_tag=C9E96_RS23670;old_locus_tag=C9E96_24265
NZ_PYJX01000248.1	Protein Homology	CDS	44707	45195	.	+	0	ID=cds-WP_061372395.1;Parent=gene-C9E96_RS23670;Dbxref=GenBank:WP_061372395.1;Name=WP_061372395.1;Ontology_term=GO:0008080;gbkey=CDS;gene=yhhY;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462447.1;locus_tag=C9E96_RS23670;product=N-acetyltransferase;protein_id=WP_061372395.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	45460	46674	.	+	.	ID=gene-C9E96_RS23675;Name=C9E96_RS23675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23675;old_locus_tag=C9E96_24270
NZ_PYJX01000248.1	Protein Homology	CDS	45460	46674	.	+	0	ID=cds-WP_000667440.1;Parent=gene-C9E96_RS23675;Dbxref=GenBank:WP_000667440.1;Name=WP_000667440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462448.3;locus_tag=C9E96_RS23675;product=PfkB family carbohydrate kinase;protein_id=WP_000667440.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	46690	47451	.	+	.	ID=gene-C9E96_RS23680;Name=C9E96_RS23680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23680;old_locus_tag=C9E96_24275
NZ_PYJX01000248.1	Protein Homology	CDS	46690	47451	.	+	0	ID=cds-WP_001066509.1;Parent=gene-C9E96_RS23680;Dbxref=GenBank:WP_001066509.1;Name=WP_001066509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462449.1;locus_tag=C9E96_RS23680;product=glutamine amidotransferase;protein_id=WP_001066509.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	47505	48476	.	+	.	ID=gene-C9E96_RS23685;Name=C9E96_RS23685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23685;old_locus_tag=C9E96_24280
NZ_PYJX01000248.1	Protein Homology	CDS	47505	48476	.	+	0	ID=cds-WP_001038949.1;Parent=gene-C9E96_RS23685;Dbxref=GenBank:WP_001038949.1;Name=WP_001038949.1;Ontology_term=GO:0055085,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462450.1;locus_tag=C9E96_RS23685;product=DMT family transporter;protein_id=WP_001038949.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	48473	49507	.	+	.	ID=gene-C9E96_RS23690;Name=C9E96_RS23690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23690;old_locus_tag=C9E96_24285
NZ_PYJX01000248.1	Protein Homology	CDS	48473	49507	.	+	0	ID=cds-WP_000675710.1;Parent=gene-C9E96_RS23690;Dbxref=GenBank:WP_000675710.1;Name=WP_000675710.1;Ontology_term=GO:0008270,GO:0016787;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462451.1;locus_tag=C9E96_RS23690;product=phosphotriesterase family protein;protein_id=WP_000675710.1;transl_table=11
NZ_PYJX01000248.1	RefSeq	gene	49552	49839	.	-	.	ID=gene-C9E96_RS23695;Name=C9E96_RS23695;end_range=49839,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23695;old_locus_tag=C9E96_24290;partial=true
NZ_PYJX01000248.1	Protein Homology	CDS	49552	49839	.	-	0	ID=cds-WP_210114536.1;Parent=gene-C9E96_RS23695;Dbxref=GenBank:WP_210114536.1;Name=WP_210114536.1;end_range=49839,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462452.1;locus_tag=C9E96_RS23695;partial=true;product=gamma-glutamyltransferase;protein_id=WP_210114536.1;transl_table=11
##sequence-region NZ_PYJX01000229.1 1 1224
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000229.1	RefSeq	region	1	1224	.	+	.	ID=NZ_PYJX01000229.1:1..1224;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000229.1	RefSeq	gene	19	1005	.	-	.	ID=gene-C9E96_RS22140;Name=C9E96_RS22140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22140;old_locus_tag=C9E96_22685
NZ_PYJX01000229.1	Protein Homology	CDS	19	1005	.	-	0	ID=cds-WP_000337539.1;Parent=gene-C9E96_RS22140;Dbxref=GenBank:WP_000337539.1;Name=WP_000337539.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000337539.1;locus_tag=C9E96_RS22140;product=IS110 family transposase;protein_id=WP_000337539.1;transl_table=11
##sequence-region NZ_PYJX01000002.1 1 1110
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000002.1	RefSeq	region	1	1110	.	+	.	ID=NZ_PYJX01000002.1:1..1110;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000002.1	RefSeq	gene	1	283	.	-	.	ID=gene-C9E96_RS24400;Name=C9E96_RS24400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24400;old_locus_tag=C9E96_00015;partial=true;start_range=.,1
NZ_PYJX01000002.1	Protein Homology	CDS	1	283	.	-	0	ID=cds-WP_135493687.1;Parent=gene-C9E96_RS24400;Dbxref=GenBank:WP_135493687.1;Name=WP_135493687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462705.1;locus_tag=C9E96_RS24400;partial=true;product=DUF202 domain-containing protein;protein_id=WP_135493687.1;start_range=.,1;transl_table=11
NZ_PYJX01000002.1	RefSeq	gene	273	620	.	-	.	ID=gene-C9E96_RS00020;Name=C9E96_RS00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00020;old_locus_tag=C9E96_00020
NZ_PYJX01000002.1	Protein Homology	CDS	273	620	.	-	0	ID=cds-WP_135493689.1;Parent=gene-C9E96_RS00020;Dbxref=GenBank:WP_135493689.1;Name=WP_135493689.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462706.1;locus_tag=C9E96_RS00020;product=YidH family protein;protein_id=WP_135493689.1;transl_table=11
NZ_PYJX01000002.1	RefSeq	gene	740	1027	.	-	.	ID=gene-C9E96_RS23905;Name=C9E96_RS23905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23905
NZ_PYJX01000002.1	GeneMarkS-2+	CDS	740	1027	.	-	0	ID=cds-WP_162564181.1;Parent=gene-C9E96_RS23905;Dbxref=GenBank:WP_162564181.1;Name=WP_162564181.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS23905;product=hypothetical protein;protein_id=WP_162564181.1;transl_table=11
##sequence-region NZ_PYJX01000064.1 1 1102
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000064.1	RefSeq	region	1	1102	.	+	.	ID=NZ_PYJX01000064.1:1..1102;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000064.1	RefSeq	gene	1	850	.	-	.	ID=gene-C9E96_RS05105;Name=malK;gbkey=Gene;gene=malK;gene_biotype=protein_coding;locus_tag=C9E96_RS05105;old_locus_tag=C9E96_05230;partial=true;start_range=.,1
NZ_PYJX01000064.1	Protein Homology	CDS	1	850	.	-	0	ID=cds-WP_135493913.1;Parent=gene-C9E96_RS05105;Dbxref=GenBank:WP_135493913.1;Name=WP_135493913.1;Ontology_term=GO:0008643,GO:0055085,GO:0005524,GO:0140359,GO:0043190;gbkey=CDS;gene=malK;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011915502.1;locus_tag=C9E96_RS05105;partial=true;product=maltose/maltodextrin ABC transporter ATP-binding protein MalK;protein_id=WP_135493913.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000004.1 1 989
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000004.1	RefSeq	region	1	989	.	+	.	ID=NZ_PYJX01000004.1:1..989;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000004.1	RefSeq	gene	1	989	.	-	.	ID=gene-C9E96_RS00310;Name=tuf;end_range=989,.;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=C9E96_RS00310;old_locus_tag=C9E96_00325;partial=true;start_range=.,1
NZ_PYJX01000004.1	Protein Homology	CDS	1	989	.	-	0	ID=cds-WP_001682180.1;Parent=gene-C9E96_RS00310;Dbxref=GenBank:WP_001682180.1;Name=WP_001682180.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;end_range=989,.;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462349.1;locus_tag=C9E96_RS00310;partial=true;product=elongation factor Tu;protein_id=WP_001682180.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000168.1 1 940
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000168.1	RefSeq	region	1	940	.	+	.	ID=NZ_PYJX01000168.1:1..940;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000168.1	RefSeq	gene	1	940	.	+	.	ID=gene-C9E96_RS15960;Name=cpsG;end_range=940,.;gbkey=Gene;gene=cpsG;gene_biotype=protein_coding;gene_synonym=manB;locus_tag=C9E96_RS15960;old_locus_tag=C9E96_16355;partial=true;start_range=.,1
NZ_PYJX01000168.1	Protein Homology	CDS	1	940	.	+	2	ID=cds-WP_135494377.1;Parent=gene-C9E96_RS15960;Dbxref=GenBank:WP_135494377.1;Name=WP_135494377.1;end_range=940,.;gbkey=CDS;gene=cpsG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461049.1;locus_tag=C9E96_RS15960;partial=true;product=colanic acid biosynthesis phosphomannomutase CpsG;protein_id=WP_135494377.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000026.1 1 924
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000026.1	RefSeq	region	1	924	.	+	.	ID=NZ_PYJX01000026.1:1..924;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000026.1	RefSeq	pseudogene	1	924	.	-	.	ID=gene-C9E96_RS01440;Name=C9E96_RS01440;end_range=924,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01440;old_locus_tag=C9E96_01470;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000026.1	Protein Homology	CDS	1	924	.	-	0	ID=cds-C9E96_RS01440;Parent=gene-C9E96_RS01440;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=924,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461467.1;locus_tag=C9E96_RS01440;partial=true;product=alpha-2-macroglobulin family protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000029.1 1 837
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000029.1	RefSeq	region	1	837	.	+	.	ID=NZ_PYJX01000029.1:1..837;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000029.1	RefSeq	pseudogene	1	266	.	-	.	ID=gene-C9E96_RS01455;Name=C9E96_RS01455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01455;old_locus_tag=C9E96_01485;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000029.1	Protein Homology	CDS	1	266	.	-	0	ID=cds-C9E96_RS01455;Parent=gene-C9E96_RS01455;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461522.1;locus_tag=C9E96_RS01455;partial=true;product=tail fiber assembly protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000029.1	RefSeq	gene	256	837	.	-	.	ID=gene-C9E96_RS24125;Name=C9E96_RS24125;end_range=837,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24125;partial=true
NZ_PYJX01000029.1	Protein Homology	CDS	256	837	.	-	0	ID=cds-WP_245306420.1;Parent=gene-C9E96_RS24125;Dbxref=GenBank:WP_245306420.1;Name=WP_245306420.1;end_range=837,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461523.1;locus_tag=C9E96_RS24125;partial=true;product=macro domain-containing protein;protein_id=WP_245306420.1;transl_table=11
##sequence-region NZ_PYJX01000191.1 1 793
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000191.1	RefSeq	region	1	793	.	+	.	ID=NZ_PYJX01000191.1:1..793;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000191.1	RefSeq	gene	140	541	.	-	.	ID=gene-C9E96_RS19345;Name=nikR;gbkey=Gene;gene=nikR;gene_biotype=protein_coding;locus_tag=C9E96_RS19345;old_locus_tag=C9E96_19855
NZ_PYJX01000191.1	Protein Homology	CDS	140	541	.	-	0	ID=cds-WP_001190057.1;Parent=gene-C9E96_RS19345;Dbxref=GenBank:WP_001190057.1;Name=WP_001190057.1;Ontology_term=GO:0006355,GO:0010045,GO:0003677,GO:0016151;gbkey=CDS;gene=nikR;go_function=DNA binding|0003677||IEA,nickel cation binding|0016151||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to nickel cation|0010045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462485.1;locus_tag=C9E96_RS19345;product=nickel-responsive transcriptional regulator NikR;protein_id=WP_001190057.1;transl_table=11
NZ_PYJX01000191.1	RefSeq	pseudogene	633	793	.	-	.	ID=gene-C9E96_RS24300;Name=C9E96_RS24300;end_range=793,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24300;partial=true;pseudo=true
NZ_PYJX01000191.1	Protein Homology	CDS	633	793	.	-	2	ID=cds-C9E96_RS24300;Parent=gene-C9E96_RS24300;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=793,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462484.1;locus_tag=C9E96_RS24300;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000092.1 1 758
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000092.1	RefSeq	region	1	758	.	+	.	ID=NZ_PYJX01000092.1:1..758;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000092.1	RefSeq	gene	98	174	.	+	.	ID=gene-C9E96_RS08260;Name=C9E96_RS08260;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08260;old_locus_tag=C9E96_08450
NZ_PYJX01000092.1	tRNAscan-SE	tRNA	98	174	.	+	.	ID=rna-C9E96_RS08260;Parent=gene-C9E96_RS08260;anticodon=(pos:132..134);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08260;product=tRNA-Ile
NZ_PYJX01000092.1	tRNAscan-SE	exon	98	174	.	+	.	ID=exon-C9E96_RS08260-1;Parent=rna-C9E96_RS08260;anticodon=(pos:132..134);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08260;product=tRNA-Ile
NZ_PYJX01000092.1	RefSeq	gene	286	361	.	+	.	ID=gene-C9E96_RS08265;Name=C9E96_RS08265;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08265;old_locus_tag=C9E96_08455
NZ_PYJX01000092.1	tRNAscan-SE	tRNA	286	361	.	+	.	ID=rna-C9E96_RS08265;Parent=gene-C9E96_RS08265;anticodon=(pos:319..321);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08265;product=tRNA-Ala
NZ_PYJX01000092.1	tRNAscan-SE	exon	286	361	.	+	.	ID=exon-C9E96_RS08265-1;Parent=rna-C9E96_RS08265;anticodon=(pos:319..321);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08265;product=tRNA-Ala
NZ_PYJX01000092.1	RefSeq	gene	544	758	.	+	.	ID=gene-C9E96_RS08270;Name=C9E96_RS08270;end_range=758,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS08270;old_locus_tag=C9E96_08460;partial=true
NZ_PYJX01000092.1	cmsearch	rRNA	544	758	.	+	.	ID=rna-C9E96_RS08270;Parent=gene-C9E96_RS08270;Dbxref=RFAM:RF02541;end_range=758,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS08270;partial=true;product=23S ribosomal RNA
NZ_PYJX01000092.1	cmsearch	exon	544	758	.	+	.	ID=exon-C9E96_RS08270-1;Parent=rna-C9E96_RS08270;Dbxref=RFAM:RF02541;end_range=758,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS08270;partial=true;product=23S ribosomal RNA
##sequence-region NZ_PYJX01000065.1 1 48210
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000065.1	RefSeq	region	1	48210	.	+	.	ID=NZ_PYJX01000065.1:1..48210;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000065.1	RefSeq	gene	1	735	.	+	.	ID=gene-C9E96_RS05110;Name=C9E96_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05110;old_locus_tag=C9E96_05235;partial=true;start_range=.,1
NZ_PYJX01000065.1	Protein Homology	CDS	1	735	.	+	0	ID=cds-WP_135493915.1;Parent=gene-C9E96_RS05110;Dbxref=GenBank:WP_135493915.1;Name=WP_135493915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462261.1;locus_tag=C9E96_RS05110;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_135493915.1;start_range=.,1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	870	2489	.	+	.	ID=gene-C9E96_RS05115;Name=citA;gbkey=Gene;gene=citA;gene_biotype=protein_coding;locus_tag=C9E96_RS05115;old_locus_tag=C9E96_05240
NZ_PYJX01000065.1	Protein Homology	CDS	870	2489	.	+	0	ID=cds-WP_023194337.1;Parent=gene-C9E96_RS05115;Dbxref=GenBank:WP_023194337.1;Name=WP_023194337.1;gbkey=CDS;gene=citA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459058.1;locus_tag=C9E96_RS05115;product=citrate sensor histidine kinase CitA;protein_id=WP_023194337.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	2491	3177	.	+	.	ID=gene-C9E96_RS05120;Name=citB;gbkey=Gene;gene=citB;gene_biotype=protein_coding;locus_tag=C9E96_RS05120;old_locus_tag=C9E96_05245
NZ_PYJX01000065.1	Protein Homology	CDS	2491	3177	.	+	0	ID=cds-WP_000377411.1;Parent=gene-C9E96_RS05120;Dbxref=GenBank:WP_000377411.1;Name=WP_000377411.1;gbkey=CDS;gene=citB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459057.1;locus_tag=C9E96_RS05120;product=citrate response regulator transcription factor CitB;protein_id=WP_000377411.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	3199	4119	.	-	.	ID=gene-C9E96_RS05125;Name=rihC;gbkey=Gene;gene=rihC;gene_biotype=protein_coding;locus_tag=C9E96_RS05125;old_locus_tag=C9E96_05250
NZ_PYJX01000065.1	Protein Homology	CDS	3199	4119	.	-	0	ID=cds-WP_000127279.1;Parent=gene-C9E96_RS05125;Dbxref=GenBank:WP_000127279.1;Name=WP_000127279.1;Ontology_term=GO:0016799;gbkey=CDS;gene=rihC;go_function=hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459056.1;locus_tag=C9E96_RS05125;product=ribonucleoside hydrolase RihC;protein_id=WP_000127279.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	4135	5337	.	-	.	ID=gene-C9E96_RS05130;Name=C9E96_RS05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05130;old_locus_tag=C9E96_05255
NZ_PYJX01000065.1	Protein Homology	CDS	4135	5337	.	-	0	ID=cds-WP_000516322.1;Parent=gene-C9E96_RS05130;Dbxref=GenBank:WP_000516322.1;Name=WP_000516322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459055.1;locus_tag=C9E96_RS05130;product=XAC2610-related protein;protein_id=WP_000516322.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	5537	6487	.	-	.	ID=gene-C9E96_RS05135;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=C9E96_RS05135;old_locus_tag=C9E96_05260
NZ_PYJX01000065.1	Protein Homology	CDS	5537	6487	.	-	0	ID=cds-WP_135493917.1;Parent=gene-C9E96_RS05135;Dbxref=GenBank:WP_135493917.1;Name=WP_135493917.1;Ontology_term=GO:0019288,GO:0050992,GO:0046872,GO:0051745;gbkey=CDS;gene=ispH;go_function=metal ion binding|0046872||IEA,4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity|0051745||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA,dimethylallyl diphosphate biosynthetic process|0050992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124087.1;locus_tag=C9E96_RS05135;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_135493917.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	6490	6939	.	-	.	ID=gene-C9E96_RS05140;Name=fkpB;gbkey=Gene;gene=fkpB;gene_biotype=protein_coding;locus_tag=C9E96_RS05140;old_locus_tag=C9E96_05265
NZ_PYJX01000065.1	Protein Homology	CDS	6490	6939	.	-	0	ID=cds-WP_000047269.1;Parent=gene-C9E96_RS05140;Dbxref=GenBank:WP_000047269.1;Name=WP_000047269.1;Ontology_term=GO:0003755;gbkey=CDS;gene=fkpB;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459053.1;locus_tag=C9E96_RS05140;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000047269.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	7094	7594	.	-	.	ID=gene-C9E96_RS05145;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=C9E96_RS05145;old_locus_tag=C9E96_05270
NZ_PYJX01000065.1	Protein Homology	CDS	7094	7594	.	-	0	ID=cds-WP_000042736.1;Parent=gene-C9E96_RS05145;Dbxref=GenBank:WP_000042736.1;Name=WP_000042736.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005886;gbkey=CDS;gene=lspA;go_component=plasma membrane|0005886||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459052.1;locus_tag=C9E96_RS05145;product=signal peptidase II;protein_id=WP_000042736.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	7594	10428	.	-	.	ID=gene-C9E96_RS05150;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=C9E96_RS05150;old_locus_tag=C9E96_05275
NZ_PYJX01000065.1	Protein Homology	CDS	7594	10428	.	-	0	ID=cds-WP_135493919.1;Parent=gene-C9E96_RS05150;Dbxref=GenBank:WP_135493919.1;Name=WP_135493919.1;Ontology_term=GO:0006428,GO:0000166,GO:0004822,GO:0005524;gbkey=CDS;gene=ileS;go_function=nucleotide binding|0000166||IEA,isoleucine-tRNA ligase activity|0004822||IEA,ATP binding|0005524||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459051.1;locus_tag=C9E96_RS05150;product=isoleucine--tRNA ligase;protein_id=WP_135493919.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	10473	11411	.	-	.	ID=gene-C9E96_RS05155;Name=ribF;gbkey=Gene;gene=ribF;gene_biotype=protein_coding;locus_tag=C9E96_RS05155;old_locus_tag=C9E96_05280
NZ_PYJX01000065.1	Protein Homology	CDS	10473	11411	.	-	0	ID=cds-WP_000767311.1;Parent=gene-C9E96_RS05155;Dbxref=GenBank:WP_000767311.1;Name=WP_000767311.1;Ontology_term=GO:0003919;gbkey=CDS;gene=ribF;go_function=FMN adenylyltransferase activity|0003919||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459050.1;locus_tag=C9E96_RS05155;product=bifunctional riboflavin kinase/FAD synthetase;protein_id=WP_000767311.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	11419	11634	.	-	.	ID=gene-C9E96_RS05160;Name=C9E96_RS05160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05160;old_locus_tag=C9E96_05285
NZ_PYJX01000065.1	Protein Homology	CDS	11419	11634	.	-	0	ID=cds-WP_001726890.1;Parent=gene-C9E96_RS05160;Dbxref=GenBank:WP_001726890.1;Name=WP_001726890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459049.1;locus_tag=C9E96_RS05160;product=DUF2575 family protein;protein_id=WP_001726890.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	11740	12003	.	+	.	ID=gene-C9E96_RS05165;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=C9E96_RS05165;old_locus_tag=C9E96_05290
NZ_PYJX01000065.1	Protein Homology	CDS	11740	12003	.	+	0	ID=cds-WP_001518655.1;Parent=gene-C9E96_RS05165;Dbxref=GenBank:WP_001518655.1;Name=WP_001518655.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsT;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006117633.1;locus_tag=C9E96_RS05165;product=30S ribosomal protein S20;protein_id=WP_001518655.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	12459	13832	.	+	.	ID=gene-C9E96_RS05170;Name=C9E96_RS05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05170;old_locus_tag=C9E96_05295
NZ_PYJX01000065.1	Protein Homology	CDS	12459	13832	.	+	0	ID=cds-WP_000099989.1;Parent=gene-C9E96_RS05170;Dbxref=GenBank:WP_000099989.1;Name=WP_000099989.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459047.1;locus_tag=C9E96_RS05170;product=MFS transporter;protein_id=WP_000099989.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	13872	15911	.	+	.	ID=gene-C9E96_RS05175;Name=C9E96_RS05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05175;old_locus_tag=C9E96_05300
NZ_PYJX01000065.1	Protein Homology	CDS	13872	15911	.	+	0	ID=cds-WP_023993818.1;Parent=gene-C9E96_RS05175;Dbxref=GenBank:WP_023993818.1;Name=WP_023993818.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459046.1;locus_tag=C9E96_RS05175;product=glycoside hydrolase family 31 protein;protein_id=WP_023993818.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	15966	16865	.	-	.	ID=gene-C9E96_RS05180;Name=nhaR;gbkey=Gene;gene=nhaR;gene_biotype=protein_coding;locus_tag=C9E96_RS05180;old_locus_tag=C9E96_05305
NZ_PYJX01000065.1	Protein Homology	CDS	15966	16865	.	-	0	ID=cds-WP_135493921.1;Parent=gene-C9E96_RS05180;Dbxref=GenBank:WP_135493921.1;Name=WP_135493921.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=nhaR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459045.1;locus_tag=C9E96_RS05180;product=transcriptional activator NhaR;protein_id=WP_135493921.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	16927	18093	.	-	.	ID=gene-C9E96_RS05185;Name=nhaA;gbkey=Gene;gene=nhaA;gene_biotype=protein_coding;locus_tag=C9E96_RS05185;old_locus_tag=C9E96_05310
NZ_PYJX01000065.1	Protein Homology	CDS	16927	18093	.	-	0	ID=cds-WP_023993819.1;Parent=gene-C9E96_RS05185;Dbxref=GenBank:WP_023993819.1;Name=WP_023993819.1;Ontology_term=GO:0006814,GO:0006885,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaA;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459044.1;locus_tag=C9E96_RS05185;product=Na+/H+ antiporter NhaA;protein_id=WP_023993819.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	pseudogene	18256	18483	.	-	.	ID=gene-C9E96_RS05190;Name=C9E96_RS05190;end_range=18483,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05190;old_locus_tag=C9E96_05315;partial=true;pseudo=true
NZ_PYJX01000065.1	Protein Homology	CDS	18256	18483	.	-	0	ID=cds-C9E96_RS05190;Parent=gene-C9E96_RS05190;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=18483,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459043.1;locus_tag=C9E96_RS05190;partial=true;product=aryl-sulfate sulfotransferase;pseudo=true;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	18405	18662	.	-	.	ID=gene-C9E96_RS05195;Name=C9E96_RS05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05195;old_locus_tag=C9E96_05320
NZ_PYJX01000065.1	Protein Homology	CDS	18405	18662	.	-	0	ID=cds-WP_023993820.1;Parent=gene-C9E96_RS05195;Dbxref=GenBank:WP_023993820.1;Name=WP_023993820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000528979.1;locus_tag=C9E96_RS05195;product=hypothetical protein;protein_id=WP_023993820.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	18781	20034	.	-	.	ID=gene-C9E96_RS05200;Name=C9E96_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05200;old_locus_tag=C9E96_05325
NZ_PYJX01000065.1	Protein Homology	CDS	18781	20034	.	-	0	ID=cds-WP_000457885.1;Parent=gene-C9E96_RS05200;Dbxref=GenBank:WP_000457885.1;Name=WP_000457885.1;Ontology_term=GO:0006310,GO:0015074,GO:0032196,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000457886.1;locus_tag=C9E96_RS05200;product=IS1/IS1595 family N-terminal zinc-binding domain-containing protein;protein_id=WP_000457885.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	20052	21248	.	-	.	ID=gene-C9E96_RS05205;Name=C9E96_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05205;old_locus_tag=C9E96_05330
NZ_PYJX01000065.1	Protein Homology	CDS	20052	21248	.	-	0	ID=cds-WP_080203734.1;Parent=gene-C9E96_RS05205;Dbxref=GenBank:WP_080203734.1;Name=WP_080203734.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519625.1;locus_tag=C9E96_RS05205;product=anaerobic sulfatase maturase;protein_id=WP_080203734.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	21352	22845	.	-	.	ID=gene-C9E96_RS05210;Name=C9E96_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05210;old_locus_tag=C9E96_05335
NZ_PYJX01000065.1	Protein Homology	CDS	21352	22845	.	-	0	ID=cds-WP_064044098.1;Parent=gene-C9E96_RS05210;Dbxref=GenBank:WP_064044098.1;Name=WP_064044098.1;Ontology_term=GO:0008484,GO:0046872;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459040.1;locus_tag=C9E96_RS05210;product=sulfatase family protein;protein_id=WP_064044098.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	22866	23630	.	-	.	ID=gene-C9E96_RS05215;Name=C9E96_RS05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05215;old_locus_tag=C9E96_05340
NZ_PYJX01000065.1	Protein Homology	CDS	22866	23630	.	-	0	ID=cds-WP_000052612.1;Parent=gene-C9E96_RS05215;Dbxref=GenBank:WP_000052612.1;Name=WP_000052612.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000052612.1;locus_tag=C9E96_RS05215;product=outer membrane protein OmpK;protein_id=WP_000052612.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	pseudogene	24074	24469	.	+	.	ID=gene-C9E96_RS05220;Name=C9E96_RS05220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05220;old_locus_tag=C9E96_05345;partial=true;pseudo=true;start_range=.,24074
NZ_PYJX01000065.1	Protein Homology	CDS	24074	24469	.	+	0	ID=cds-C9E96_RS05220;Parent=gene-C9E96_RS05220;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009166,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015633260.1;locus_tag=C9E96_RS05220;partial=true;product=5'-nucleotidase C-terminal domain-containing protein;pseudo=true;start_range=.,24074;transl_table=11
NZ_PYJX01000065.1	RefSeq	pseudogene	24590	24769	.	-	.	ID=gene-C9E96_RS24490;Name=C9E96_RS24490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24490;old_locus_tag=C9E96_05350;partial=true;pseudo=true;start_range=.,24590
NZ_PYJX01000065.1	Protein Homology	CDS	24590	24769	.	-	0	ID=cds-C9E96_RS24490;Parent=gene-C9E96_RS24490;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007726487.1;locus_tag=C9E96_RS24490;partial=true;product=arylsulfatase;pseudo=true;start_range=.,24590;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	25539	25988	.	+	.	ID=gene-C9E96_RS05230;Name=C9E96_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05230;old_locus_tag=C9E96_05355
NZ_PYJX01000065.1	Protein Homology	CDS	25539	25988	.	+	0	ID=cds-WP_080203733.1;Parent=gene-C9E96_RS05230;Dbxref=GenBank:WP_080203733.1;Name=WP_080203733.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459034.1;locus_tag=C9E96_RS05230;product=winged helix-turn-helix domain-containing protein;protein_id=WP_080203733.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	26088	26375	.	-	.	ID=gene-C9E96_RS05235;Name=C9E96_RS05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05235;old_locus_tag=C9E96_05360
NZ_PYJX01000065.1	Protein Homology	CDS	26088	26375	.	-	0	ID=cds-WP_000839833.1;Parent=gene-C9E96_RS05235;Dbxref=GenBank:WP_000839833.1;Name=WP_000839833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000839835.1;locus_tag=C9E96_RS05235;product=hypothetical protein;protein_id=WP_000839833.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	26414	27259	.	-	.	ID=gene-C9E96_RS05240;Name=C9E96_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05240;old_locus_tag=C9E96_05365
NZ_PYJX01000065.1	Protein Homology	CDS	26414	27259	.	-	0	ID=cds-WP_000291393.1;Parent=gene-C9E96_RS05240;Dbxref=GenBank:WP_000291393.1;Name=WP_000291393.1;Ontology_term=GO:0015036;gbkey=CDS;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459033.1;locus_tag=C9E96_RS05240;product=DsbA family protein;protein_id=WP_000291393.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	27324	28055	.	-	.	ID=gene-C9E96_RS05245;Name=bcfG;gbkey=Gene;gene=bcfG;gene_biotype=protein_coding;locus_tag=C9E96_RS05245;old_locus_tag=C9E96_05370
NZ_PYJX01000065.1	Protein Homology	CDS	27324	28055	.	-	0	ID=cds-WP_001135035.1;Parent=gene-C9E96_RS05245;Dbxref=GenBank:WP_001135035.1;Name=WP_001135035.1;gbkey=CDS;gene=bcfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459032.1;locus_tag=C9E96_RS05245;product=fimbrial chaperone BcfG;protein_id=WP_001135035.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	28021	28539	.	-	.	ID=gene-C9E96_RS05250;Name=C9E96_RS05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05250;old_locus_tag=C9E96_05375
NZ_PYJX01000065.1	Protein Homology	CDS	28021	28539	.	-	0	ID=cds-WP_001243227.1;Parent=gene-C9E96_RS05250;Dbxref=GenBank:WP_001243227.1;Name=WP_001243227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459031.1;locus_tag=C9E96_RS05250;product=fimbrial protein BcfF;protein_id=WP_001243227.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	28555	29100	.	-	.	ID=gene-C9E96_RS05255;Name=C9E96_RS05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05255;old_locus_tag=C9E96_05380
NZ_PYJX01000065.1	Protein Homology	CDS	28555	29100	.	-	0	ID=cds-WP_135493923.1;Parent=gene-C9E96_RS05255;Dbxref=GenBank:WP_135493923.1;Name=WP_135493923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459030.1;locus_tag=C9E96_RS05255;product=fimbrial protein BcfE;protein_id=WP_135493923.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	29101	30108	.	-	.	ID=gene-C9E96_RS05260;Name=C9E96_RS05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05260;old_locus_tag=C9E96_05385
NZ_PYJX01000065.1	Protein Homology	CDS	29101	30108	.	-	0	ID=cds-WP_080203732.1;Parent=gene-C9E96_RS05260;Dbxref=GenBank:WP_080203732.1;Name=WP_080203732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459029.1;locus_tag=C9E96_RS05260;product=fimbrial protein BcfD;protein_id=WP_080203732.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	30109	32730	.	-	.	ID=gene-C9E96_RS05265;Name=bcfC;gbkey=Gene;gene=bcfC;gene_biotype=protein_coding;locus_tag=C9E96_RS05265;old_locus_tag=C9E96_05390
NZ_PYJX01000065.1	Protein Homology	CDS	30109	32730	.	-	0	ID=cds-WP_080203731.1;Parent=gene-C9E96_RS05265;Dbxref=GenBank:WP_080203731.1;Name=WP_080203731.1;gbkey=CDS;gene=bcfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459028.1;locus_tag=C9E96_RS05265;product=fimbrial usher BcfC;protein_id=WP_080203731.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	32735	33421	.	-	.	ID=gene-C9E96_RS05270;Name=bcfB;gbkey=Gene;gene=bcfB;gene_biotype=protein_coding;locus_tag=C9E96_RS05270;old_locus_tag=C9E96_05395
NZ_PYJX01000065.1	Protein Homology	CDS	32735	33421	.	-	0	ID=cds-WP_000742551.1;Parent=gene-C9E96_RS05270;Dbxref=GenBank:WP_000742551.1;Name=WP_000742551.1;gbkey=CDS;gene=bcfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459027.1;locus_tag=C9E96_RS05270;product=fimbrial biogenesis chaperone BcfB;protein_id=WP_000742551.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	33522	34064	.	-	.	ID=gene-C9E96_RS05275;Name=C9E96_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05275;old_locus_tag=C9E96_05400
NZ_PYJX01000065.1	Protein Homology	CDS	33522	34064	.	-	0	ID=cds-WP_000743357.1;Parent=gene-C9E96_RS05275;Dbxref=GenBank:WP_000743357.1;Name=WP_000743357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459026.1;locus_tag=C9E96_RS05275;product=fimbrial protein BcfA;protein_id=WP_000743357.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	34494	35198	.	-	.	ID=gene-C9E96_RS05280;Name=C9E96_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05280;old_locus_tag=C9E96_05405
NZ_PYJX01000065.1	Protein Homology	CDS	34494	35198	.	-	0	ID=cds-WP_000738617.1;Parent=gene-C9E96_RS05280;Dbxref=GenBank:WP_000738617.1;Name=WP_000738617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459025.1;locus_tag=C9E96_RS05280;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_000738617.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	35479	38475	.	-	.	ID=gene-C9E96_RS05285;Name=C9E96_RS05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05285;old_locus_tag=C9E96_05410
NZ_PYJX01000065.1	Protein Homology	CDS	35479	38475	.	-	0	ID=cds-WP_080203730.1;Parent=gene-C9E96_RS05285;Dbxref=GenBank:WP_080203730.1;Name=WP_080203730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459024.1;locus_tag=C9E96_RS05285;product=chitinase;protein_id=WP_080203730.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	38568	40667	.	-	.	ID=gene-C9E96_RS05290;Name=C9E96_RS05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05290;old_locus_tag=C9E96_05415
NZ_PYJX01000065.1	Protein Homology	CDS	38568	40667	.	-	0	ID=cds-WP_000235797.1;Parent=gene-C9E96_RS05290;Dbxref=GenBank:WP_000235797.1;Name=WP_000235797.1;Ontology_term=GO:0005975;gbkey=CDS;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459023.1;locus_tag=C9E96_RS05290;product=glycosyl hydrolase family 18 protein;protein_id=WP_000235797.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	41048	41491	.	+	.	ID=gene-C9E96_RS05295;Name=C9E96_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05295;old_locus_tag=C9E96_05420
NZ_PYJX01000065.1	Protein Homology	CDS	41048	41491	.	+	0	ID=cds-WP_000860681.1;Parent=gene-C9E96_RS05295;Dbxref=GenBank:WP_000860681.1;Name=WP_000860681.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459022.1;locus_tag=C9E96_RS05295;product=winged helix-turn-helix domain-containing protein;protein_id=WP_000860681.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	41508	42041	.	+	.	ID=gene-C9E96_RS05300;Name=C9E96_RS05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05300;old_locus_tag=C9E96_05425
NZ_PYJX01000065.1	Protein Homology	CDS	41508	42041	.	+	0	ID=cds-WP_080203729.1;Parent=gene-C9E96_RS05300;Dbxref=GenBank:WP_080203729.1;Name=WP_080203729.1;Ontology_term=GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459021.1;locus_tag=C9E96_RS05300;product=glycoside hydrolase family 108 protein;protein_id=WP_080203729.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	42102	42446	.	-	.	ID=gene-C9E96_RS05305;Name=C9E96_RS05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05305;old_locus_tag=C9E96_05430
NZ_PYJX01000065.1	Protein Homology	CDS	42102	42446	.	-	0	ID=cds-WP_000026889.1;Parent=gene-C9E96_RS05305;Dbxref=GenBank:WP_000026889.1;Name=WP_000026889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459020.1;locus_tag=C9E96_RS05305;product=phage holin family protein;protein_id=WP_000026889.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	42573	43520	.	-	.	ID=gene-C9E96_RS05310;Name=C9E96_RS05310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05310;old_locus_tag=C9E96_05435
NZ_PYJX01000065.1	Protein Homology	CDS	42573	43520	.	-	0	ID=cds-WP_023232157.1;Parent=gene-C9E96_RS05310;Dbxref=GenBank:WP_023232157.1;Name=WP_023232157.1;Ontology_term=GO:0001216,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459019.1;locus_tag=C9E96_RS05310;product=LysR family transcriptional regulator;protein_id=WP_023232157.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	43801	44940	.	-	.	ID=gene-C9E96_RS05315;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=C9E96_RS05315;old_locus_tag=C9E96_05440
NZ_PYJX01000065.1	Protein Homology	CDS	43801	44940	.	-	0	ID=cds-WP_001119009.1;Parent=gene-C9E96_RS05315;Dbxref=GenBank:WP_001119009.1;Name=WP_001119009.1;Ontology_term=GO:0006457,GO:0009408,GO:0005515,GO:0005524;gbkey=CDS;gene=dnaJ;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=protein folding|0006457||IEA,response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459018.1;locus_tag=C9E96_RS05315;product=molecular chaperone DnaJ;protein_id=WP_001119009.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	45026	46942	.	-	.	ID=gene-C9E96_RS05320;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=C9E96_RS05320;old_locus_tag=C9E96_05445
NZ_PYJX01000065.1	Protein Homology	CDS	45026	46942	.	-	0	ID=cds-WP_135493925.1;Parent=gene-C9E96_RS05320;Dbxref=GenBank:WP_135493925.1;Name=WP_135493925.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001737966.1;locus_tag=C9E96_RS05320;product=molecular chaperone DnaK;protein_id=WP_135493925.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	gene	47291	47695	.	+	.	ID=gene-C9E96_RS05325;Name=C9E96_RS05325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05325;old_locus_tag=C9E96_05450
NZ_PYJX01000065.1	Protein Homology	CDS	47291	47695	.	+	0	ID=cds-WP_001258090.1;Parent=gene-C9E96_RS05325;Dbxref=GenBank:WP_001258090.1;Name=WP_001258090.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459016.1;locus_tag=C9E96_RS05325;product=DUF2541 family protein;protein_id=WP_001258090.1;transl_table=11
NZ_PYJX01000065.1	RefSeq	pseudogene	47731	48174	.	+	.	ID=gene-C9E96_RS05330;Name=C9E96_RS05330;end_range=48174,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05330;old_locus_tag=C9E96_05455;partial=true;pseudo=true
NZ_PYJX01000065.1	Protein Homology	CDS	47731	48174	.	+	0	ID=cds-C9E96_RS05330;Parent=gene-C9E96_RS05330;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=48174,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459015.1;locus_tag=C9E96_RS05330;partial=true;product=DUF3944 domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000220.1 1 749
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000220.1	RefSeq	region	1	749	.	+	.	ID=NZ_PYJX01000220.1:1..749;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000220.1	RefSeq	pseudogene	1	749	.	+	.	ID=gene-C9E96_RS21840;Name=C9E96_RS21840;end_range=749,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS21840;old_locus_tag=C9E96_22380;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000220.1	Protein Homology	CDS	1	749	.	+	0	ID=cds-C9E96_RS21840;Parent=gene-C9E96_RS21840;Note=catalyzes the formation of pyruvate from oxaloacetate%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=749,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9E96_RS21840;partial=true;product=sodium-extruding oxaloacetate decarboxylase subunit alpha;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000131.1 1 716
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000131.1	RefSeq	region	1	716	.	+	.	ID=NZ_PYJX01000131.1:1..716;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000131.1	RefSeq	gene	110	568	.	-	.	ID=gene-C9E96_RS11020;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=C9E96_RS11020;old_locus_tag=C9E96_11290
NZ_PYJX01000131.1	Protein Homology	CDS	110	568	.	-	0	ID=cds-WP_000502120.1;Parent=gene-C9E96_RS11020;Dbxref=GenBank:WP_000502120.1;Name=WP_000502120.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;gene=tnpA;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459923.1;locus_tag=C9E96_RS11020;product=IS200/IS605-like element IS200F family transposase;protein_id=WP_000502120.1;transl_table=11
NZ_PYJX01000131.1	RefSeq	gene	525	716	.	-	.	ID=gene-C9E96_RS24045;Name=C9E96_RS24045;end_range=716,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24045;old_locus_tag=C9E96_11295;partial=true
NZ_PYJX01000131.1	GeneMarkS-2+	CDS	525	716	.	-	0	ID=cds-WP_000397091.1;Parent=gene-C9E96_RS24045;Dbxref=GenBank:WP_000397091.1;Name=WP_000397091.1;end_range=716,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS24045;partial=true;product=hypothetical protein;protein_id=WP_000397091.1;transl_table=11
##sequence-region NZ_PYJX01000063.1 1 711
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000063.1	RefSeq	region	1	711	.	+	.	ID=NZ_PYJX01000063.1:1..711;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000063.1	RefSeq	gene	32	649	.	+	.	ID=gene-C9E96_RS05095;Name=dmsB;gbkey=Gene;gene=dmsB;gene_biotype=protein_coding;locus_tag=C9E96_RS05095;old_locus_tag=C9E96_05225
NZ_PYJX01000063.1	Protein Homology	CDS	32	649	.	+	0	ID=cds-WP_080166607.1;Parent=gene-C9E96_RS05095;Dbxref=GenBank:WP_080166607.1;Name=WP_080166607.1;gbkey=CDS;gene=dmsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000213046.1;locus_tag=C9E96_RS05095;product=dimethylsulfoxide reductase iron-sulfur subunit DmsB;protein_id=WP_080166607.1;transl_table=11
NZ_PYJX01000063.1	RefSeq	gene	651	711	.	+	.	ID=gene-C9E96_RS05100;Name=C9E96_RS05100;end_range=711,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05100;partial=true
NZ_PYJX01000063.1	Protein Homology	CDS	651	711	.	+	0	ID=cds-WP_001545491.1;Parent=gene-C9E96_RS05100;Dbxref=GenBank:WP_001545491.1;Name=WP_001545491.1;Ontology_term=GO:0019645,GO:0016020;end_range=711,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706781.2;locus_tag=C9E96_RS05100;partial=true;product=DmsC/YnfH family molybdoenzyme membrane anchor subunit;protein_id=WP_001545491.1;transl_table=11
##sequence-region NZ_PYJX01000114.1 1 693
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000114.1	RefSeq	region	1	693	.	+	.	ID=NZ_PYJX01000114.1:1..693;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000114.1	RefSeq	gene	1	693	.	+	.	ID=gene-C9E96_RS09685;Name=C9E96_RS09685;end_range=693,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09685;old_locus_tag=C9E96_09905;partial=true;start_range=.,1
NZ_PYJX01000114.1	Protein Homology	CDS	1	693	.	+	1	ID=cds-WP_135494159.1;Parent=gene-C9E96_RS09685;Dbxref=GenBank:WP_135494159.1;Name=WP_135494159.1;end_range=693,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463447.1;locus_tag=C9E96_RS09685;partial=true;product=type 1 fimbrial protein;protein_id=WP_135494159.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000203.1 1 665
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000203.1	RefSeq	region	1	665	.	+	.	ID=NZ_PYJX01000203.1:1..665;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000203.1	RefSeq	gene	40	665	.	+	.	ID=gene-C9E96_RS20235;Name=C9E96_RS20235;end_range=665,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20235;old_locus_tag=C9E96_20755;partial=true
NZ_PYJX01000203.1	Protein Homology	CDS	40	665	.	+	0	ID=cds-WP_074156986.1;Parent=gene-C9E96_RS20235;Dbxref=GenBank:WP_074156986.1;Name=WP_074156986.1;Ontology_term=GO:0006814,GO:0016829;end_range=665,.;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459059.1;locus_tag=C9E96_RS20235;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_074156986.1;transl_table=11
##sequence-region NZ_PYJX01000062.1 1 632
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000062.1	RefSeq	region	1	632	.	+	.	ID=NZ_PYJX01000062.1:1..632;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000062.1	RefSeq	gene	1	632	.	-	.	ID=gene-C9E96_RS05090;Name=C9E96_RS05090;end_range=632,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05090;old_locus_tag=C9E96_05220;partial=true;start_range=.,1
NZ_PYJX01000062.1	Protein Homology	CDS	1	632	.	-	0	ID=cds-WP_135493911.1;Parent=gene-C9E96_RS05090;Dbxref=GenBank:WP_135493911.1;Name=WP_135493911.1;end_range=632,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459747.1;locus_tag=C9E96_RS05090;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_135493911.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000010.1 1 617
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000010.1	RefSeq	region	1	617	.	+	.	ID=NZ_PYJX01000010.1:1..617;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000010.1	RefSeq	gene	1	617	.	-	.	ID=gene-C9E96_RS00665;Name=C9E96_RS00665;end_range=617,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS00665;old_locus_tag=C9E96_00680;partial=true;start_range=.,1
NZ_PYJX01000010.1	cmsearch	rRNA	1	617	.	-	.	ID=rna-C9E96_RS00665;Parent=gene-C9E96_RS00665;Dbxref=RFAM:RF02541;end_range=617,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS00665;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000010.1	cmsearch	exon	1	617	.	-	.	ID=exon-C9E96_RS00665-1;Parent=rna-C9E96_RS00665;Dbxref=RFAM:RF02541;end_range=617,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS00665;partial=true;product=23S ribosomal RNA;start_range=.,1
##sequence-region NZ_PYJX01000213.1 1 597
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000213.1	RefSeq	region	1	597	.	+	.	ID=NZ_PYJX01000213.1:1..597;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000213.1	RefSeq	gene	114	189	.	+	.	ID=gene-C9E96_RS21175;Name=C9E96_RS21175;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS21175;old_locus_tag=C9E96_21705
NZ_PYJX01000213.1	tRNAscan-SE	tRNA	114	189	.	+	.	ID=rna-C9E96_RS21175;Parent=gene-C9E96_RS21175;anticodon=(pos:148..150);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS21175;product=tRNA-Glu
NZ_PYJX01000213.1	tRNAscan-SE	exon	114	189	.	+	.	ID=exon-C9E96_RS21175-1;Parent=rna-C9E96_RS21175;anticodon=(pos:148..150);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS21175;product=tRNA-Glu
NZ_PYJX01000213.1	RefSeq	gene	383	597	.	+	.	ID=gene-C9E96_RS21180;Name=C9E96_RS21180;end_range=597,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS21180;old_locus_tag=C9E96_21710;partial=true
NZ_PYJX01000213.1	cmsearch	rRNA	383	597	.	+	.	ID=rna-C9E96_RS21180;Parent=gene-C9E96_RS21180;Dbxref=RFAM:RF02541;end_range=597,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS21180;partial=true;product=23S ribosomal RNA
NZ_PYJX01000213.1	cmsearch	exon	383	597	.	+	.	ID=exon-C9E96_RS21180-1;Parent=rna-C9E96_RS21180;Dbxref=RFAM:RF02541;end_range=597,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS21180;partial=true;product=23S ribosomal RNA
##sequence-region NZ_PYJX01000200.1 1 476
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000200.1	RefSeq	region	1	476	.	+	.	ID=NZ_PYJX01000200.1:1..476;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000200.1	RefSeq	gene	1	426	.	+	.	ID=gene-C9E96_RS20040;Name=C9E96_RS20040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20040;old_locus_tag=C9E96_20555;partial=true;start_range=.,1
NZ_PYJX01000200.1	Protein Homology	CDS	1	426	.	+	0	ID=cds-WP_135494525.1;Parent=gene-C9E96_RS20040;Dbxref=GenBank:WP_135494525.1;Name=WP_135494525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9E96_RS20040;partial=true;product=biotin/lipoyl-containing protein;protein_id=WP_135494525.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000061.1 1 473
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000061.1	RefSeq	region	1	473	.	+	.	ID=NZ_PYJX01000061.1:1..473;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000061.1	RefSeq	gene	1	423	.	+	.	ID=gene-C9E96_RS05085;Name=C9E96_RS05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05085;old_locus_tag=C9E96_05215;partial=true;start_range=.,1
NZ_PYJX01000061.1	Protein Homology	CDS	1	423	.	+	0	ID=cds-WP_135493910.1;Parent=gene-C9E96_RS05085;Dbxref=GenBank:WP_135493910.1;Name=WP_135493910.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9E96_RS05085;partial=true;product=biotin/lipoyl-containing protein;protein_id=WP_135493910.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000043.1 1 48139
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000043.1	RefSeq	region	1	48139	.	+	.	ID=NZ_PYJX01000043.1:1..48139;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000043.1	RefSeq	gene	147	1241	.	-	.	ID=gene-C9E96_RS03085;Name=cysA;gbkey=Gene;gene=cysA;gene_biotype=protein_coding;locus_tag=C9E96_RS03085;old_locus_tag=C9E96_03130
NZ_PYJX01000043.1	Protein Homology	CDS	147	1241	.	-	0	ID=cds-WP_023993743.1;Parent=gene-C9E96_RS03085;Dbxref=GenBank:WP_023993743.1;Name=WP_023993743.1;Ontology_term=GO:1902358,GO:0005524,GO:0015419,GO:0016020,GO:0043190;gbkey=CDS;gene=cysA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461376.1;locus_tag=C9E96_RS03085;product=sulfate/thiosulfate ABC transporter ATP-binding protein CysA;protein_id=WP_023993743.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	1231	2106	.	-	.	ID=gene-C9E96_RS03090;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=C9E96_RS03090;old_locus_tag=C9E96_03135
NZ_PYJX01000043.1	Protein Homology	CDS	1231	2106	.	-	0	ID=cds-WP_000852705.1;Parent=gene-C9E96_RS03090;Dbxref=GenBank:WP_000852705.1;Name=WP_000852705.1;Ontology_term=GO:0055085,GO:1902358,GO:0015419,GO:0016020;gbkey=CDS;gene=cysW;go_component=membrane|0016020||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=transmembrane transport|0055085||IEA,sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461377.1;locus_tag=C9E96_RS03090;product=sulfate/thiosulfate ABC transporter permease CysW;protein_id=WP_000852705.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	2106	2939	.	-	.	ID=gene-C9E96_RS03095;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=C9E96_RS03095;old_locus_tag=C9E96_03140
NZ_PYJX01000043.1	Protein Homology	CDS	2106	2939	.	-	0	ID=cds-WP_000881746.1;Parent=gene-C9E96_RS03095;Dbxref=GenBank:WP_000881746.1;Name=WP_000881746.1;Ontology_term=GO:0055085,GO:1902358,GO:0015419,GO:0016020;gbkey=CDS;gene=cysT;go_component=membrane|0016020||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=transmembrane transport|0055085||IEA,sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000458418.1;locus_tag=C9E96_RS03095;product=sulfate/thiosulfate ABC transporter permease CysT;protein_id=WP_000881746.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	2939	3955	.	-	.	ID=gene-C9E96_RS03100;Name=cysP;gbkey=Gene;gene=cysP;gene_biotype=protein_coding;locus_tag=C9E96_RS03100;old_locus_tag=C9E96_03145
NZ_PYJX01000043.1	Protein Homology	CDS	2939	3955	.	-	0	ID=cds-WP_000290273.1;Parent=gene-C9E96_RS03100;Dbxref=GenBank:WP_000290273.1;Name=WP_000290273.1;gbkey=CDS;gene=cysP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461379.1;locus_tag=C9E96_RS03100;product=thiosulfate/sulfate ABC transporter substrate-binding protein CysP;protein_id=WP_000290273.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	4113	4904	.	-	.	ID=gene-C9E96_RS03105;Name=ucpA;gbkey=Gene;gene=ucpA;gene_biotype=protein_coding;locus_tag=C9E96_RS03105;old_locus_tag=C9E96_03150
NZ_PYJX01000043.1	Protein Homology	CDS	4113	4904	.	-	0	ID=cds-WP_000517460.1;Parent=gene-C9E96_RS03105;Dbxref=GenBank:WP_000517460.1;Name=WP_000517460.1;gbkey=CDS;gene=ucpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461380.1;locus_tag=C9E96_RS03105;product=SDR family oxidoreductase UcpA;protein_id=WP_000517460.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	5142	6041	.	-	.	ID=gene-C9E96_RS03110;Name=yfeX;gbkey=Gene;gene=yfeX;gene_biotype=protein_coding;locus_tag=C9E96_RS03110;old_locus_tag=C9E96_03155
NZ_PYJX01000043.1	Protein Homology	CDS	5142	6041	.	-	0	ID=cds-WP_000084583.1;Parent=gene-C9E96_RS03110;Dbxref=GenBank:WP_000084583.1;Name=WP_000084583.1;gbkey=CDS;gene=yfeX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461381.1;locus_tag=C9E96_RS03110;product=porphyrinogen peroxidase;protein_id=WP_000084583.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	6136	6711	.	-	.	ID=gene-C9E96_RS03115;Name=C9E96_RS03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03115;old_locus_tag=C9E96_03160
NZ_PYJX01000043.1	Protein Homology	CDS	6136	6711	.	-	0	ID=cds-WP_135493837.1;Parent=gene-C9E96_RS03115;Dbxref=GenBank:WP_135493837.1;Name=WP_135493837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461382.1;locus_tag=C9E96_RS03115;product=RpoE-regulated lipoprotein;protein_id=WP_135493837.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	6773	7222	.	-	.	ID=gene-C9E96_RS03120;Name=C9E96_RS03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03120;old_locus_tag=C9E96_03165
NZ_PYJX01000043.1	Protein Homology	CDS	6773	7222	.	-	0	ID=cds-WP_000842940.1;Parent=gene-C9E96_RS03120;Dbxref=GenBank:WP_000842940.1;Name=WP_000842940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461383.1;locus_tag=C9E96_RS03120;product=DUF2919 domain-containing protein;protein_id=WP_000842940.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	7209	7634	.	-	.	ID=gene-C9E96_RS03125;Name=C9E96_RS03125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03125;old_locus_tag=C9E96_03170
NZ_PYJX01000043.1	Protein Homology	CDS	7209	7634	.	-	0	ID=cds-WP_000406008.1;Parent=gene-C9E96_RS03125;Dbxref=GenBank:WP_000406008.1;Name=WP_000406008.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311332.2;locus_tag=C9E96_RS03125;product=GNAT family acetyltransferase;protein_id=WP_000406008.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	7847	8716	.	+	.	ID=gene-C9E96_RS03130;Name=amiA;gbkey=Gene;gene=amiA;gene_biotype=protein_coding;locus_tag=C9E96_RS03130;old_locus_tag=C9E96_03175
NZ_PYJX01000043.1	Protein Homology	CDS	7847	8716	.	+	0	ID=cds-WP_000102880.1;Parent=gene-C9E96_RS03130;Dbxref=GenBank:WP_000102880.1;Name=WP_000102880.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=amiA;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461385.1;locus_tag=C9E96_RS03130;product=N-acetylmuramoyl-L-alanine amidase AmiA;protein_id=WP_000102880.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	8719	9618	.	+	.	ID=gene-C9E96_RS03135;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=C9E96_RS03135;old_locus_tag=C9E96_03180
NZ_PYJX01000043.1	Protein Homology	CDS	8719	9618	.	+	0	ID=cds-WP_135493839.1;Parent=gene-C9E96_RS03135;Dbxref=GenBank:WP_135493839.1;Name=WP_135493839.1;Ontology_term=GO:0006779,GO:0004109;gbkey=CDS;gene=hemF;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461386.1;locus_tag=C9E96_RS03135;product=oxygen-dependent coproporphyrinogen oxidase;protein_id=WP_135493839.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	9639	9968	.	+	.	ID=gene-C9E96_RS03140;Name=C9E96_RS03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03140;old_locus_tag=C9E96_03185
NZ_PYJX01000043.1	Protein Homology	CDS	9639	9968	.	+	0	ID=cds-WP_001194342.1;Parent=gene-C9E96_RS03140;Dbxref=GenBank:WP_001194342.1;Name=WP_001194342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461387.1;locus_tag=C9E96_RS03140;product=hypothetical protein;protein_id=WP_001194342.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	pseudogene	10044	10316	.	+	.	ID=gene-C9E96_RS03145;Name=C9E96_RS03145;end_range=10316,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS03145;old_locus_tag=C9E96_03190;partial=true;pseudo=true;start_range=.,10044
NZ_PYJX01000043.1	Protein Homology	CDS	10044	10316	.	+	0	ID=cds-C9E96_RS03145;Parent=gene-C9E96_RS03145;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=10316,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000344434.1;locus_tag=C9E96_RS03145;partial=true;product=DUF1963 domain-containing protein;pseudo=true;start_range=.,10044;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	10408	11460	.	-	.	ID=gene-C9E96_RS03150;Name=eutR;gbkey=Gene;gene=eutR;gene_biotype=protein_coding;locus_tag=C9E96_RS03150;old_locus_tag=C9E96_03195
NZ_PYJX01000043.1	Protein Homology	CDS	10408	11460	.	-	0	ID=cds-WP_000753666.1;Parent=gene-C9E96_RS03150;Dbxref=GenBank:WP_000753666.1;Name=WP_000753666.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=eutR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461389.1;locus_tag=C9E96_RS03150;product=HTH-type transcriptional regulator EutR;protein_id=WP_000753666.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	11508	12002	.	-	.	ID=gene-C9E96_RS03155;Name=eutK;gbkey=Gene;gene=eutK;gene_biotype=protein_coding;locus_tag=C9E96_RS03155;old_locus_tag=C9E96_03200
NZ_PYJX01000043.1	Protein Homology	CDS	11508	12002	.	-	0	ID=cds-WP_000606266.1;Parent=gene-C9E96_RS03155;Dbxref=GenBank:WP_000606266.1;Name=WP_000606266.1;gbkey=CDS;gene=eutK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461390.1;locus_tag=C9E96_RS03155;product=ethanolamine utilization microcompartment protein EutK;protein_id=WP_000606266.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	12015	12674	.	-	.	ID=gene-C9E96_RS03160;Name=eutL;gbkey=Gene;gene=eutL;gene_biotype=protein_coding;locus_tag=C9E96_RS03160;old_locus_tag=C9E96_03205
NZ_PYJX01000043.1	Protein Homology	CDS	12015	12674	.	-	0	ID=cds-WP_001111056.1;Parent=gene-C9E96_RS03160;Dbxref=GenBank:WP_001111056.1;Name=WP_001111056.1;Ontology_term=GO:0005198,GO:0031469;gbkey=CDS;gene=eutL;go_component=bacterial microcompartment|0031469||IEA;go_function=structural molecule activity|0005198||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461391.1;locus_tag=C9E96_RS03160;product=ethanolamine utilization microcompartment protein EutL;protein_id=WP_001111056.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	12684	13580	.	-	.	ID=gene-C9E96_RS03165;Name=eutC;gbkey=Gene;gene=eutC;gene_biotype=protein_coding;locus_tag=C9E96_RS03165;old_locus_tag=C9E96_03210
NZ_PYJX01000043.1	Protein Homology	CDS	12684	13580	.	-	0	ID=cds-WP_000372344.1;Parent=gene-C9E96_RS03165;Dbxref=GenBank:WP_000372344.1;Name=WP_000372344.1;Ontology_term=GO:0006520,GO:0008851;gbkey=CDS;gene=eutC;go_function=ethanolamine ammonia-lyase activity|0008851||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461392.1;locus_tag=C9E96_RS03165;product=ethanolamine ammonia-lyase subunit EutC;protein_id=WP_000372344.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	13600	14961	.	-	.	ID=gene-C9E96_RS03170;Name=eutB;gbkey=Gene;gene=eutB;gene_biotype=protein_coding;locus_tag=C9E96_RS03170;old_locus_tag=C9E96_03215
NZ_PYJX01000043.1	Protein Homology	CDS	13600	14961	.	-	0	ID=cds-WP_000769990.1;Parent=gene-C9E96_RS03170;Dbxref=GenBank:WP_000769990.1;Name=WP_000769990.1;gbkey=CDS;gene=eutB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461393.1;locus_tag=C9E96_RS03170;product=ethanolamine ammonia-lyase subunit alpha;protein_id=WP_000769990.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	14973	16376	.	-	.	ID=gene-C9E96_RS03175;Name=eutA;gbkey=Gene;gene=eutA;gene_biotype=protein_coding;locus_tag=C9E96_RS03175;old_locus_tag=C9E96_03220
NZ_PYJX01000043.1	Protein Homology	CDS	14973	16376	.	-	0	ID=cds-WP_001097522.1;Parent=gene-C9E96_RS03175;Dbxref=GenBank:WP_001097522.1;Name=WP_001097522.1;gbkey=CDS;gene=eutA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461394.1;locus_tag=C9E96_RS03175;product=ethanolamine ammonia-lyase reactivating factor EutA;protein_id=WP_001097522.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	16373	17599	.	-	.	ID=gene-C9E96_RS03180;Name=eutH;gbkey=Gene;gene=eutH;gene_biotype=protein_coding;locus_tag=C9E96_RS03180;old_locus_tag=C9E96_03225
NZ_PYJX01000043.1	Protein Homology	CDS	16373	17599	.	-	0	ID=cds-WP_000512359.1;Parent=gene-C9E96_RS03180;Dbxref=GenBank:WP_000512359.1;Name=WP_000512359.1;Ontology_term=GO:0034229,GO:0034228,GO:0016020;gbkey=CDS;gene=eutH;go_component=membrane|0016020||IEA;go_function=ethanolamine transmembrane transporter activity|0034228||IEA;go_process=ethanolamine transport|0034229||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461395.1;locus_tag=C9E96_RS03180;product=ethanolamine utilization protein EutH;protein_id=WP_000512359.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	17719	18906	.	-	.	ID=gene-C9E96_RS03185;Name=eutG;gbkey=Gene;gene=eutG;gene_biotype=protein_coding;locus_tag=C9E96_RS03185;old_locus_tag=C9E96_03230
NZ_PYJX01000043.1	Protein Homology	CDS	17719	18906	.	-	0	ID=cds-WP_001147505.1;Parent=gene-C9E96_RS03185;Dbxref=GenBank:WP_001147505.1;Name=WP_001147505.1;Ontology_term=GO:0016491;gbkey=CDS;gene=eutG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461396.1;locus_tag=C9E96_RS03185;product=ethanolamine utilization ethanol dehydrogenase EutG;protein_id=WP_001147505.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	18896	19735	.	-	.	ID=gene-C9E96_RS03190;Name=eutJ;gbkey=Gene;gene=eutJ;gene_biotype=protein_coding;locus_tag=C9E96_RS03190;old_locus_tag=C9E96_03235
NZ_PYJX01000043.1	Protein Homology	CDS	18896	19735	.	-	0	ID=cds-WP_080203946.1;Parent=gene-C9E96_RS03190;Dbxref=GenBank:WP_080203946.1;Name=WP_080203946.1;Ontology_term=GO:0051301,GO:0005515;gbkey=CDS;gene=eutJ;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461397.1;locus_tag=C9E96_RS03190;product=ethanolamine utilization protein EutJ;protein_id=WP_080203946.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	19746	21149	.	-	.	ID=gene-C9E96_RS03195;Name=C9E96_RS03195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03195;old_locus_tag=C9E96_03240
NZ_PYJX01000043.1	Protein Homology	CDS	19746	21149	.	-	0	ID=cds-WP_001075640.1;Parent=gene-C9E96_RS03195;Dbxref=GenBank:WP_001075640.1;Name=WP_001075640.1;Ontology_term=GO:0004029,GO:0008774;gbkey=CDS;go_function=aldehyde dehydrogenase (NAD+) activity|0004029||IEA,acetaldehyde dehydrogenase (acetylating) activity|0008774||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461398.1;locus_tag=C9E96_RS03195;product=aldehyde dehydrogenase family protein;protein_id=WP_001075640.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	21161	21448	.	-	.	ID=gene-C9E96_RS03200;Name=eutN;gbkey=Gene;gene=eutN;gene_biotype=protein_coding;locus_tag=C9E96_RS03200;old_locus_tag=C9E96_03245
NZ_PYJX01000043.1	Protein Homology	CDS	21161	21448	.	-	0	ID=cds-WP_001522340.1;Parent=gene-C9E96_RS03200;Dbxref=GenBank:WP_001522340.1;Name=WP_001522340.1;gbkey=CDS;gene=eutN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416951.1;locus_tag=C9E96_RS03200;product=ethanolamine utilization microcompartment protein EutN;protein_id=WP_001522340.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	21561	21851	.	-	.	ID=gene-C9E96_RS03205;Name=eutM;gbkey=Gene;gene=eutM;gene_biotype=protein_coding;locus_tag=C9E96_RS03205;old_locus_tag=C9E96_03250
NZ_PYJX01000043.1	Protein Homology	CDS	21561	21851	.	-	0	ID=cds-WP_000387716.1;Parent=gene-C9E96_RS03205;Dbxref=GenBank:WP_000387716.1;Name=WP_000387716.1;gbkey=CDS;gene=eutM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461400.1;locus_tag=C9E96_RS03205;product=ethanolamine utilization microcompartment protein EutM;protein_id=WP_000387716.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	21892	22908	.	-	.	ID=gene-C9E96_RS03210;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=C9E96_RS03210;old_locus_tag=C9E96_03255
NZ_PYJX01000043.1	Protein Homology	CDS	21892	22908	.	-	0	ID=cds-WP_000582927.1;Parent=gene-C9E96_RS03210;Dbxref=GenBank:WP_000582927.1;Name=WP_000582927.1;Ontology_term=GO:0006086,GO:0008959;gbkey=CDS;gene=pta;go_function=phosphate acetyltransferase activity|0008959||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461401.1;locus_tag=C9E96_RS03210;product=phosphate acetyltransferase;protein_id=WP_000582927.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	22905	23708	.	-	.	ID=gene-C9E96_RS03215;Name=eutT;gbkey=Gene;gene=eutT;gene_biotype=protein_coding;locus_tag=C9E96_RS03215;old_locus_tag=C9E96_03260
NZ_PYJX01000043.1	Protein Homology	CDS	22905	23708	.	-	0	ID=cds-WP_000997654.1;Parent=gene-C9E96_RS03215;Dbxref=GenBank:WP_000997654.1;Name=WP_000997654.1;Ontology_term=GO:0006580,GO:0008817;gbkey=CDS;gene=eutT;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=ethanolamine metabolic process|0006580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461402.1;locus_tag=C9E96_RS03215;product=ethanolamine utilization cob(I)yrinic acid a%2Cc-diamide adenosyltransferase EutT;protein_id=WP_000997654.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	23705	24394	.	-	.	ID=gene-C9E96_RS03220;Name=eutQ;gbkey=Gene;gene=eutQ;gene_biotype=protein_coding;locus_tag=C9E96_RS03220;old_locus_tag=C9E96_03265
NZ_PYJX01000043.1	Protein Homology	CDS	23705	24394	.	-	0	ID=cds-WP_000733862.1;Parent=gene-C9E96_RS03220;Dbxref=GenBank:WP_000733862.1;Name=WP_000733862.1;gbkey=CDS;gene=eutQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461403.1;locus_tag=C9E96_RS03220;product=ethanolamine utilization acetate kinase EutQ;protein_id=WP_000733862.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	24372	24851	.	-	.	ID=gene-C9E96_RS03225;Name=eutP;gbkey=Gene;gene=eutP;gene_biotype=protein_coding;locus_tag=C9E96_RS03225;old_locus_tag=C9E96_03270
NZ_PYJX01000043.1	Protein Homology	CDS	24372	24851	.	-	0	ID=cds-WP_000820751.1;Parent=gene-C9E96_RS03225;Dbxref=GenBank:WP_000820751.1;Name=WP_000820751.1;gbkey=CDS;gene=eutP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461404.1;locus_tag=C9E96_RS03225;product=ethanolamine utilization acetate kinase EutP;protein_id=WP_000820751.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	24864	25199	.	-	.	ID=gene-C9E96_RS03230;Name=eutS;gbkey=Gene;gene=eutS;gene_biotype=protein_coding;locus_tag=C9E96_RS03230;old_locus_tag=C9E96_03275
NZ_PYJX01000043.1	Protein Homology	CDS	24864	25199	.	-	0	ID=cds-WP_001031445.1;Parent=gene-C9E96_RS03230;Dbxref=GenBank:WP_001031445.1;Name=WP_001031445.1;gbkey=CDS;gene=eutS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461405.1;locus_tag=C9E96_RS03230;product=ethanolamine utilization microcompartment protein EutS;protein_id=WP_001031445.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	25616	27895	.	-	.	ID=gene-C9E96_RS03235;Name=maeB;gbkey=Gene;gene=maeB;gene_biotype=protein_coding;locus_tag=C9E96_RS03235;old_locus_tag=C9E96_03280
NZ_PYJX01000043.1	Protein Homology	CDS	25616	27895	.	-	0	ID=cds-WP_000344299.1;Parent=gene-C9E96_RS03235;Dbxref=GenBank:WP_000344299.1;Name=WP_000344299.1;gbkey=CDS;gene=maeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461407.1;locus_tag=C9E96_RS03235;product=NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase;protein_id=WP_000344299.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	28167	29117	.	+	.	ID=gene-C9E96_RS03240;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=C9E96_RS03240;old_locus_tag=C9E96_03290
NZ_PYJX01000043.1	Protein Homology	CDS	28167	29117	.	+	0	ID=cds-WP_023993735.1;Parent=gene-C9E96_RS03240;Dbxref=GenBank:WP_023993735.1;Name=WP_023993735.1;Ontology_term=GO:0006098,GO:0004801,GO:0005737;gbkey=CDS;gene=tal;go_component=cytoplasm|0005737||IEA;go_function=transaldolase activity|0004801||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461408.1;locus_tag=C9E96_RS03240;product=transaldolase;protein_id=WP_023993735.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	29137	31137	.	+	.	ID=gene-C9E96_RS03245;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=C9E96_RS03245;old_locus_tag=C9E96_03295
NZ_PYJX01000043.1	Protein Homology	CDS	29137	31137	.	+	0	ID=cds-WP_135493841.1;Parent=gene-C9E96_RS03245;Dbxref=GenBank:WP_135493841.1;Name=WP_135493841.1;Ontology_term=GO:0004802;gbkey=CDS;gene=tkt;go_function=transketolase activity|0004802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461409.1;locus_tag=C9E96_RS03245;product=transketolase;protein_id=WP_135493841.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	31200	31430	.	-	.	ID=gene-C9E96_RS03250;Name=C9E96_RS03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03250;old_locus_tag=C9E96_03300
NZ_PYJX01000043.1	Protein Homology	CDS	31200	31430	.	-	0	ID=cds-WP_000700635.1;Parent=gene-C9E96_RS03250;Dbxref=GenBank:WP_000700635.1;Name=WP_000700635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461410.1;locus_tag=C9E96_RS03250;product=hypothetical protein;protein_id=WP_000700635.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	31558	32601	.	-	.	ID=gene-C9E96_RS03255;Name=C9E96_RS03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03255;old_locus_tag=C9E96_03305
NZ_PYJX01000043.1	Protein Homology	CDS	31558	32601	.	-	0	ID=cds-WP_001270669.1;Parent=gene-C9E96_RS03255;Dbxref=GenBank:WP_001270669.1;Name=WP_001270669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461411.1;locus_tag=C9E96_RS03255;product=DUF1176 domain-containing protein;protein_id=WP_001270669.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	32726	33301	.	-	.	ID=gene-C9E96_RS03260;Name=nudK;gbkey=Gene;gene=nudK;gene_biotype=protein_coding;locus_tag=C9E96_RS03260;old_locus_tag=C9E96_03310
NZ_PYJX01000043.1	Protein Homology	CDS	32726	33301	.	-	0	ID=cds-WP_000084033.1;Parent=gene-C9E96_RS03260;Dbxref=GenBank:WP_000084033.1;Name=WP_000084033.1;Ontology_term=GO:0016818,GO:0046872;gbkey=CDS;gene=nudK;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461412.1;locus_tag=C9E96_RS03260;product=GDP-mannose pyrophosphatase NudK;protein_id=WP_000084033.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	33505	34803	.	+	.	ID=gene-C9E96_RS03265;Name=pbp4b;gbkey=Gene;gene=pbp4b;gene_biotype=protein_coding;locus_tag=C9E96_RS03265;old_locus_tag=C9E96_03315
NZ_PYJX01000043.1	Protein Homology	CDS	33505	34803	.	+	0	ID=cds-WP_080219566.1;Parent=gene-C9E96_RS03265;Dbxref=GenBank:WP_080219566.1;Name=WP_080219566.1;gbkey=CDS;gene=pbp4b;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461413.1;locus_tag=C9E96_RS03265;product=penicillin binding protein PBP4B;protein_id=WP_080219566.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	35252	37213	.	-	.	ID=gene-C9E96_RS03270;Name=aegA;gbkey=Gene;gene=aegA;gene_biotype=protein_coding;locus_tag=C9E96_RS03270;old_locus_tag=C9E96_03325
NZ_PYJX01000043.1	Protein Homology	CDS	35252	37213	.	-	0	ID=cds-WP_023181774.1;Parent=gene-C9E96_RS03270;Dbxref=GenBank:WP_023181774.1;Name=WP_023181774.1;Ontology_term=GO:0016491;gbkey=CDS;gene=aegA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461414.1;locus_tag=C9E96_RS03270;product=formate-dependent uric acid utilization protein AegA;protein_id=WP_023181774.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	37399	39099	.	+	.	ID=gene-C9E96_RS03275;Name=narQ;gbkey=Gene;gene=narQ;gene_biotype=protein_coding;locus_tag=C9E96_RS03275;old_locus_tag=C9E96_03330
NZ_PYJX01000043.1	Protein Homology	CDS	37399	39099	.	+	0	ID=cds-WP_080203945.1;Parent=gene-C9E96_RS03275;Dbxref=GenBank:WP_080203945.1;Name=WP_080203945.1;Ontology_term=GO:0000160,GO:0000155,GO:0046983,GO:0016020;gbkey=CDS;gene=narQ;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein dimerization activity|0046983||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461415.1;locus_tag=C9E96_RS03275;product=nitrate/nitrite two-component system sensor histidine kinase NarQ;protein_id=WP_080203945.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	39284	42397	.	+	.	ID=gene-C9E96_RS03280;Name=acrD;gbkey=Gene;gene=acrD;gene_biotype=protein_coding;locus_tag=C9E96_RS03280;old_locus_tag=C9E96_03335
NZ_PYJX01000043.1	Protein Homology	CDS	39284	42397	.	+	0	ID=cds-WP_001263076.1;Parent=gene-C9E96_RS03280;Dbxref=GenBank:WP_001263076.1;Name=WP_001263076.1;Ontology_term=GO:0042908,GO:0015562;gbkey=CDS;gene=acrD;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461416.1;locus_tag=C9E96_RS03280;product=multidrug efflux RND transporter permease AcrD;protein_id=WP_001263076.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	42499	42558	.	-	.	ID=gene-C9E96_RS03285;Name=ypfM;gbkey=Gene;gene=ypfM;gene_biotype=protein_coding;locus_tag=C9E96_RS03285;old_locus_tag=C9E96_03340
NZ_PYJX01000043.1	Protein Homology	CDS	42499	42558	.	-	0	ID=cds-WP_001386977.1;Parent=gene-C9E96_RS03285;Dbxref=GenBank:WP_001386977.1;Name=WP_001386977.1;gbkey=CDS;gene=ypfM;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165325.1;locus_tag=C9E96_RS03285;product=protein YpfM;protein_id=WP_001386977.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	42971	43327	.	+	.	ID=gene-C9E96_RS03290;Name=C9E96_RS03290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03290;old_locus_tag=C9E96_03345
NZ_PYJX01000043.1	Protein Homology	CDS	42971	43327	.	+	0	ID=cds-WP_000631923.1;Parent=gene-C9E96_RS03290;Dbxref=GenBank:WP_000631923.1;Name=WP_000631923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461417.1;locus_tag=C9E96_RS03290;product=ArsC family reductase;protein_id=WP_000631923.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	43331	44458	.	+	.	ID=gene-C9E96_RS03295;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=C9E96_RS03295;old_locus_tag=C9E96_03350
NZ_PYJX01000043.1	Protein Homology	CDS	43331	44458	.	+	0	ID=cds-WP_001277822.1;Parent=gene-C9E96_RS03295;Dbxref=GenBank:WP_001277822.1;Name=WP_001277822.1;Ontology_term=GO:0009089,GO:0009014;gbkey=CDS;gene=dapE;go_function=succinyl-diaminopimelate desuccinylase activity|0009014||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020078199.1;locus_tag=C9E96_RS03295;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_001277822.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	44486	44686	.	+	.	ID=gene-C9E96_RS03300;Name=C9E96_RS03300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03300;old_locus_tag=C9E96_03355
NZ_PYJX01000043.1	Protein Homology	CDS	44486	44686	.	+	0	ID=cds-WP_000383839.1;Parent=gene-C9E96_RS03300;Dbxref=GenBank:WP_000383839.1;Name=WP_000383839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461419.1;locus_tag=C9E96_RS03300;product=YpfN family protein;protein_id=WP_000383839.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	44713	46731	.	-	.	ID=gene-C9E96_RS03305;Name=tmcA;gbkey=Gene;gene=tmcA;gene_biotype=protein_coding;locus_tag=C9E96_RS03305;old_locus_tag=C9E96_03360
NZ_PYJX01000043.1	Protein Homology	CDS	44713	46731	.	-	0	ID=cds-WP_080203944.1;Parent=gene-C9E96_RS03305;Dbxref=GenBank:WP_080203944.1;Name=WP_080203944.1;gbkey=CDS;gene=tmcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461420.1;locus_tag=C9E96_RS03305;product=tRNA cytosine(34) acetyltransferase TmcA;protein_id=WP_080203944.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	46747	47610	.	-	.	ID=gene-C9E96_RS03310;Name=ypfJ;gbkey=Gene;gene=ypfJ;gene_biotype=protein_coding;locus_tag=C9E96_RS03310;old_locus_tag=C9E96_03365
NZ_PYJX01000043.1	Protein Homology	CDS	46747	47610	.	-	0	ID=cds-WP_001267523.1;Parent=gene-C9E96_RS03310;Dbxref=GenBank:WP_001267523.1;Name=WP_001267523.1;gbkey=CDS;gene=ypfJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461421.1;locus_tag=C9E96_RS03310;product=KPN_02809 family neutral zinc metallopeptidase;protein_id=WP_001267523.1;transl_table=11
NZ_PYJX01000043.1	RefSeq	gene	47741	48139	.	-	.	ID=gene-C9E96_RS03315;Name=C9E96_RS03315;end_range=48139,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03315;old_locus_tag=C9E96_03370;partial=true
NZ_PYJX01000043.1	Protein Homology	CDS	47741	48139	.	-	0	ID=cds-WP_280951842.1;Parent=gene-C9E96_RS03315;Dbxref=GenBank:WP_280951842.1;Name=WP_280951842.1;end_range=48139,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461422.1;locus_tag=C9E96_RS03315;partial=true;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_280951842.1;transl_table=11
##sequence-region NZ_PYJX01000032.1 1 445
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000032.1	RefSeq	region	1	445	.	+	.	ID=NZ_PYJX01000032.1:1..445;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000032.1	RefSeq	pseudogene	1	129	.	+	.	ID=gene-C9E96_RS24015;Name=C9E96_RS24015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24015;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000032.1	Protein Homology	CDS	1	129	.	+	0	ID=cds-C9E96_RS24015;Parent=gene-C9E96_RS24015;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460024.1;locus_tag=C9E96_RS24015;partial=true;product=phage tail protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000032.1	RefSeq	gene	126	445	.	+	.	ID=gene-C9E96_RS01565;Name=C9E96_RS01565;end_range=445,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01565;old_locus_tag=C9E96_01595;partial=true
NZ_PYJX01000032.1	Protein Homology	CDS	126	445	.	+	0	ID=cds-WP_031621569.1;Parent=gene-C9E96_RS01565;Dbxref=GenBank:WP_031621569.1;Name=WP_031621569.1;end_range=445,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461523.1;locus_tag=C9E96_RS01565;partial=true;product=macro domain-containing protein;protein_id=WP_031621569.1;transl_table=11
##sequence-region NZ_PYJX01000133.1 1 410
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000133.1	RefSeq	region	1	410	.	+	.	ID=NZ_PYJX01000133.1:1..410;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000133.1	RefSeq	pseudogene	1	410	.	+	.	ID=gene-C9E96_RS11165;Name=C9E96_RS11165;end_range=410,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS11165;old_locus_tag=C9E96_11440;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000133.1	Protein Homology	CDS	1	410	.	+	0	ID=cds-C9E96_RS11165;Parent=gene-C9E96_RS11165;Note=catalyzes the formation of pyruvate from oxaloacetate%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=410,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9E96_RS11165;partial=true;product=sodium-extruding oxaloacetate decarboxylase subunit alpha;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000022.1 1 402
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000022.1	RefSeq	region	1	402	.	+	.	ID=NZ_PYJX01000022.1:1..402;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000022.1	RefSeq	gene	1	402	.	+	.	ID=gene-C9E96_RS01365;Name=C9E96_RS01365;end_range=402,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS01365;old_locus_tag=C9E96_01395;partial=true;start_range=.,1
NZ_PYJX01000022.1	cmsearch	rRNA	1	402	.	+	.	ID=rna-C9E96_RS01365;Parent=gene-C9E96_RS01365;Dbxref=RFAM:RF02541;end_range=402,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS01365;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000022.1	cmsearch	exon	1	402	.	+	.	ID=exon-C9E96_RS01365-1;Parent=rna-C9E96_RS01365;Dbxref=RFAM:RF02541;end_range=402,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS01365;partial=true;product=23S ribosomal RNA;start_range=.,1
##sequence-region NZ_PYJX01000126.1 1 398
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000126.1	RefSeq	region	1	398	.	+	.	ID=NZ_PYJX01000126.1:1..398;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000126.1	RefSeq	pseudogene	15	398	.	-	.	ID=gene-C9E96_RS10805;Name=C9E96_RS10805;end_range=398,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS10805;old_locus_tag=C9E96_11050;partial=true;pseudo=true;start_range=.,15
NZ_PYJX01000126.1	Protein Homology	CDS	15	398	.	-	0	ID=cds-C9E96_RS10805;Parent=gene-C9E96_RS10805;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=398,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459903.1;locus_tag=C9E96_RS10805;partial=true;product=phage tail protein;pseudo=true;start_range=.,15;transl_table=11
##sequence-region NZ_PYJX01000076.1 1 362
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000076.1	RefSeq	region	1	362	.	+	.	ID=NZ_PYJX01000076.1:1..362;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000076.1	RefSeq	gene	121	252	.	+	.	ID=gene-C9E96_RS06510;Name=C9E96_RS06510;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9E96_RS06510;old_locus_tag=C9E96_06665
NZ_PYJX01000076.1	cmsearch	ncRNA	121	252	.	+	.	ID=rna-C9E96_RS06510;Parent=gene-C9E96_RS06510;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS06510;product=RtT sRNA
NZ_PYJX01000076.1	cmsearch	exon	121	252	.	+	.	ID=exon-C9E96_RS06510-1;Parent=rna-C9E96_RS06510;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS06510;product=RtT sRNA
##sequence-region NZ_PYJX01000025.1 1 345
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000025.1	RefSeq	region	1	345	.	+	.	ID=NZ_PYJX01000025.1:1..345;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000025.1	RefSeq	gene	1	135	.	-	.	ID=gene-C9E96_RS01430;Name=C9E96_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01430;old_locus_tag=C9E96_01460;partial=true;start_range=.,1
NZ_PYJX01000025.1	Protein Homology	CDS	1	135	.	-	0	ID=cds-WP_245306419.1;Parent=gene-C9E96_RS01430;Dbxref=GenBank:WP_245306419.1;Name=WP_245306419.1;Ontology_term=GO:0016836,GO:0031419;gbkey=CDS;go_function=hydro-lyase activity|0016836||IEA,cobalamin binding|0031419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460985.1;locus_tag=C9E96_RS01430;partial=true;product=propanediol/glycerol family dehydratase large subunit;protein_id=WP_245306419.1;start_range=.,1;transl_table=11
NZ_PYJX01000025.1	RefSeq	pseudogene	154	345	.	-	.	ID=gene-C9E96_RS01435;Name=C9E96_RS01435;end_range=345,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01435;old_locus_tag=C9E96_01465;partial=true;pseudo=true
NZ_PYJX01000025.1	Protein Homology	CDS	154	345	.	-	0	ID=cds-C9E96_RS01435;Parent=gene-C9E96_RS01435;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=345,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228567.1;locus_tag=C9E96_RS01435;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000009.1 1 344
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000009.1	RefSeq	region	1	344	.	+	.	ID=NZ_PYJX01000009.1:1..344;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000009.1	RefSeq	gene	1	344	.	-	.	ID=gene-C9E96_RS00660;Name=C9E96_RS00660;end_range=344,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00660;old_locus_tag=C9E96_00675;partial=true;start_range=.,1
NZ_PYJX01000009.1	Protein Homology	CDS	1	344	.	-	0	ID=cds-WP_135493717.1;Parent=gene-C9E96_RS00660;Dbxref=GenBank:WP_135493717.1;Name=WP_135493717.1;end_range=344,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461524.1;locus_tag=C9E96_RS00660;partial=true;product=phage tail protein;protein_id=WP_135493717.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000028.1 1 334
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000028.1	RefSeq	region	1	334	.	+	.	ID=NZ_PYJX01000028.1:1..334;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000028.1	RefSeq	pseudogene	92	334	.	+	.	ID=gene-C9E96_RS01450;Name=C9E96_RS01450;end_range=334,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01450;old_locus_tag=C9E96_01480;partial=true;pseudo=true
NZ_PYJX01000028.1	Protein Homology	CDS	92	334	.	+	0	ID=cds-C9E96_RS01450;Parent=gene-C9E96_RS01450;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=334,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459347.3;locus_tag=C9E96_RS01450;partial=true;product=efflux transporter periplasmic adaptor subunit;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000146.1 1 316
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000146.1	RefSeq	region	1	316	.	+	.	ID=NZ_PYJX01000146.1:1..316;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000146.1	RefSeq	pseudogene	1	316	.	-	.	ID=gene-C9E96_RS13005;Name=C9E96_RS13005;end_range=316,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13005;old_locus_tag=C9E96_13320;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000146.1	Protein Homology	CDS	1	316	.	-	2	ID=cds-C9E96_RS13005;Parent=gene-C9E96_RS13005;Note=catalyzes the formation of pyruvate from oxaloacetate%3B internal stop%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=316,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225041.1;locus_tag=C9E96_RS13005;partial=true;product=sodium-extruding oxaloacetate decarboxylase subunit alpha;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000073.1 1 47276
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000073.1	RefSeq	region	1	47276	.	+	.	ID=NZ_PYJX01000073.1:1..47276;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000073.1	RefSeq	gene	69	998	.	+	.	ID=gene-C9E96_RS06175;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=C9E96_RS06175;old_locus_tag=C9E96_06320
NZ_PYJX01000073.1	Protein Homology	CDS	69	998	.	+	0	ID=cds-WP_135493970.1;Parent=gene-C9E96_RS06175;Dbxref=GenBank:WP_135493970.1;Name=WP_135493970.1;gbkey=CDS;gene=motB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460879.1;locus_tag=C9E96_RS06175;product=flagellar motor protein MotB;protein_id=WP_135493970.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	1003	3018	.	+	.	ID=gene-C9E96_RS06180;Name=cheA;gbkey=Gene;gene=cheA;gene_biotype=protein_coding;locus_tag=C9E96_RS06180;old_locus_tag=C9E96_06325
NZ_PYJX01000073.1	Protein Homology	CDS	1003	3018	.	+	0	ID=cds-WP_000061301.1;Parent=gene-C9E96_RS06180;Dbxref=GenBank:WP_000061301.1;Name=WP_000061301.1;Ontology_term=GO:0000160,GO:0006935,GO:0016310,GO:0000155;gbkey=CDS;gene=cheA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,chemotaxis|0006935||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460878.1;locus_tag=C9E96_RS06180;product=chemotaxis protein CheA;protein_id=WP_000061301.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	3039	3542	.	+	.	ID=gene-C9E96_RS06185;Name=cheW;gbkey=Gene;gene=cheW;gene_biotype=protein_coding;locus_tag=C9E96_RS06185;old_locus_tag=C9E96_06330
NZ_PYJX01000073.1	Protein Homology	CDS	3039	3542	.	+	0	ID=cds-WP_000147295.1;Parent=gene-C9E96_RS06185;Dbxref=GenBank:WP_000147295.1;Name=WP_000147295.1;gbkey=CDS;gene=cheW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460877.1;locus_tag=C9E96_RS06185;product=chemotaxis protein CheW;protein_id=WP_000147295.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	3779	5440	.	+	.	ID=gene-C9E96_RS06190;Name=tar;gbkey=Gene;gene=tar;gene_biotype=protein_coding;locus_tag=C9E96_RS06190;old_locus_tag=C9E96_06335
NZ_PYJX01000073.1	Protein Homology	CDS	3779	5440	.	+	0	ID=cds-WP_135493972.1;Parent=gene-C9E96_RS06190;Dbxref=GenBank:WP_135493972.1;Name=WP_135493972.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;gene=tar;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460876.1;locus_tag=C9E96_RS06190;product=methyl-accepting chemotaxis protein II;protein_id=WP_135493972.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	5601	6467	.	+	.	ID=gene-C9E96_RS06195;Name=cheR;gbkey=Gene;gene=cheR;gene_biotype=protein_coding;locus_tag=C9E96_RS06195;old_locus_tag=C9E96_06340
NZ_PYJX01000073.1	Protein Homology	CDS	5601	6467	.	+	0	ID=cds-WP_000204362.1;Parent=gene-C9E96_RS06195;Dbxref=GenBank:WP_000204362.1;Name=WP_000204362.1;Ontology_term=GO:0008757;gbkey=CDS;gene=cheR;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460875.1;locus_tag=C9E96_RS06195;product=protein-glutamate O-methyltransferase CheR;protein_id=WP_000204362.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	6464	7513	.	+	.	ID=gene-C9E96_RS06200;Name=cheB;gbkey=Gene;gene=cheB;gene_biotype=protein_coding;locus_tag=C9E96_RS06200;old_locus_tag=C9E96_06345
NZ_PYJX01000073.1	Protein Homology	CDS	6464	7513	.	+	0	ID=cds-WP_000036389.1;Parent=gene-C9E96_RS06200;Dbxref=GenBank:WP_000036389.1;Name=WP_000036389.1;gbkey=CDS;gene=cheB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000036372.1;locus_tag=C9E96_RS06200;product=protein-glutamate methylesterase/protein glutamine deamidase;protein_id=WP_000036389.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	7531	7920	.	+	.	ID=gene-C9E96_RS06205;Name=cheY;gbkey=Gene;gene=cheY;gene_biotype=protein_coding;locus_tag=C9E96_RS06205;old_locus_tag=C9E96_06350
NZ_PYJX01000073.1	Protein Homology	CDS	7531	7920	.	+	0	ID=cds-WP_000763861.1;Parent=gene-C9E96_RS06205;Dbxref=GenBank:WP_000763861.1;Name=WP_000763861.1;Ontology_term=GO:0000160;gbkey=CDS;gene=cheY;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002210873.1;locus_tag=C9E96_RS06205;product=chemotaxis response regulator CheY;protein_id=WP_000763861.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	7931	8575	.	+	.	ID=gene-C9E96_RS06210;Name=cheZ;gbkey=Gene;gene=cheZ;gene_biotype=protein_coding;locus_tag=C9E96_RS06210;old_locus_tag=C9E96_06355
NZ_PYJX01000073.1	Protein Homology	CDS	7931	8575	.	+	0	ID=cds-WP_000983585.1;Parent=gene-C9E96_RS06210;Dbxref=GenBank:WP_000983585.1;Name=WP_000983585.1;Ontology_term=GO:0050920,GO:0003824;gbkey=CDS;gene=cheZ;go_function=catalytic activity|0003824||IEA;go_process=regulation of chemotaxis|0050920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460872.1;locus_tag=C9E96_RS06210;product=protein phosphatase CheZ;protein_id=WP_000983585.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	8769	9920	.	+	.	ID=gene-C9E96_RS06215;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=C9E96_RS06215;old_locus_tag=C9E96_06360
NZ_PYJX01000073.1	Protein Homology	CDS	8769	9920	.	+	0	ID=cds-WP_135493974.1;Parent=gene-C9E96_RS06215;Dbxref=GenBank:WP_135493974.1;Name=WP_135493974.1;Ontology_term=GO:0015031,GO:0044780,GO:0016020;gbkey=CDS;gene=flhB;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460871.1;locus_tag=C9E96_RS06215;product=flagellar biosynthesis protein FlhB;protein_id=WP_135493974.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	9913	11991	.	+	.	ID=gene-C9E96_RS06220;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=C9E96_RS06220;old_locus_tag=C9E96_06365
NZ_PYJX01000073.1	Protein Homology	CDS	9913	11991	.	+	0	ID=cds-WP_135493976.1;Parent=gene-C9E96_RS06220;Dbxref=GenBank:WP_135493976.1;Name=WP_135493976.1;Ontology_term=GO:0044780,GO:0016020;gbkey=CDS;gene=flhA;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460870.1;locus_tag=C9E96_RS06220;product=flagellar biosynthesis protein FlhA;protein_id=WP_135493976.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	11991	12383	.	+	.	ID=gene-C9E96_RS06225;Name=flhE;gbkey=Gene;gene=flhE;gene_biotype=protein_coding;locus_tag=C9E96_RS06225;old_locus_tag=C9E96_06370
NZ_PYJX01000073.1	Protein Homology	CDS	11991	12383	.	+	0	ID=cds-WP_001233619.1;Parent=gene-C9E96_RS06225;Dbxref=GenBank:WP_001233619.1;Name=WP_001233619.1;Ontology_term=GO:0044781;gbkey=CDS;gene=flhE;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460869.1;locus_tag=C9E96_RS06225;product=flagellar protein FlhE;protein_id=WP_001233619.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	12620	13759	.	+	.	ID=gene-C9E96_RS06230;Name=C9E96_RS06230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06230;old_locus_tag=C9E96_06375
NZ_PYJX01000073.1	Protein Homology	CDS	12620	13759	.	+	0	ID=cds-WP_000989908.1;Parent=gene-C9E96_RS06230;Dbxref=GenBank:WP_000989908.1;Name=WP_000989908.1;Ontology_term=GO:0005975,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460868.1;locus_tag=C9E96_RS06230;product=glycoside hydrolase family 88/105 protein;protein_id=WP_000989908.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	13813	15684	.	-	.	ID=gene-C9E96_RS06235;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=C9E96_RS06235;old_locus_tag=C9E96_06380
NZ_PYJX01000073.1	Protein Homology	CDS	13813	15684	.	-	0	ID=cds-WP_080204006.1;Parent=gene-C9E96_RS06235;Dbxref=GenBank:WP_080204006.1;Name=WP_080204006.1;Ontology_term=GO:0009252,GO:0003824,GO:0008658,GO:0016020;gbkey=CDS;gene=mrdA;go_component=membrane|0016020||IEA;go_function=catalytic activity|0003824||IEA,penicillin binding|0008658||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460867.1;locus_tag=C9E96_RS06235;product=penicillin-binding protein 2;protein_id=WP_080204006.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	15873	17606	.	-	.	ID=gene-C9E96_RS06240;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=C9E96_RS06240;old_locus_tag=C9E96_06385
NZ_PYJX01000073.1	Protein Homology	CDS	15873	17606	.	-	0	ID=cds-WP_135493978.1;Parent=gene-C9E96_RS06240;Dbxref=GenBank:WP_135493978.1;Name=WP_135493978.1;Ontology_term=GO:0006420,GO:0004814,GO:0005524,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA,ATP binding|0005524||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001025321.1;locus_tag=C9E96_RS06240;product=arginine--tRNA ligase;protein_id=WP_135493978.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	17843	18412	.	+	.	ID=gene-C9E96_RS06245;Name=C9E96_RS06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06245;old_locus_tag=C9E96_06390
NZ_PYJX01000073.1	Protein Homology	CDS	17843	18412	.	+	0	ID=cds-WP_000024794.1;Parent=gene-C9E96_RS06245;Dbxref=GenBank:WP_000024794.1;Name=WP_000024794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460865.1;locus_tag=C9E96_RS06245;product=VOC family protein;protein_id=WP_000024794.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	18432	19178	.	+	.	ID=gene-C9E96_RS06250;Name=cutC;gbkey=Gene;gene=cutC;gene_biotype=protein_coding;locus_tag=C9E96_RS06250;old_locus_tag=C9E96_06395
NZ_PYJX01000073.1	Protein Homology	CDS	18432	19178	.	+	0	ID=cds-WP_080204005.1;Parent=gene-C9E96_RS06250;Dbxref=GenBank:WP_080204005.1;Name=WP_080204005.1;Ontology_term=GO:0055070,GO:0005507;gbkey=CDS;gene=cutC;go_function=copper ion binding|0005507||IEA;go_process=copper ion homeostasis|0055070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460864.1;locus_tag=C9E96_RS06250;product=copper homeostasis protein CutC;protein_id=WP_080204005.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	19414	20385	.	-	.	ID=gene-C9E96_RS06255;Name=cmoB;gbkey=Gene;gene=cmoB;gene_biotype=protein_coding;locus_tag=C9E96_RS06255;old_locus_tag=C9E96_06405
NZ_PYJX01000073.1	Protein Homology	CDS	19414	20385	.	-	0	ID=cds-WP_135493980.1;Parent=gene-C9E96_RS06255;Dbxref=GenBank:WP_135493980.1;Name=WP_135493980.1;Ontology_term=GO:0002098,GO:0016765;gbkey=CDS;gene=cmoB;go_function=transferase activity%2C transferring alkyl or aryl (other than methyl) groups|0016765||IEA;go_process=tRNA wobble uridine modification|0002098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460863.1;locus_tag=C9E96_RS06255;product=tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB;protein_id=WP_135493980.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	20382	21125	.	-	.	ID=gene-C9E96_RS06260;Name=cmoA;gbkey=Gene;gene=cmoA;gene_biotype=protein_coding;locus_tag=C9E96_RS06260;old_locus_tag=C9E96_06410
NZ_PYJX01000073.1	Protein Homology	CDS	20382	21125	.	-	0	ID=cds-WP_135493982.1;Parent=gene-C9E96_RS06260;Dbxref=GenBank:WP_135493982.1;Name=WP_135493982.1;gbkey=CDS;gene=cmoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460862.1;locus_tag=C9E96_RS06260;product=carboxy-S-adenosyl-L-methionine synthase CmoA;protein_id=WP_135493982.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	21166	21561	.	-	.	ID=gene-C9E96_RS06265;Name=C9E96_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06265;old_locus_tag=C9E96_06415
NZ_PYJX01000073.1	Protein Homology	CDS	21166	21561	.	-	0	ID=cds-WP_000252975.1;Parent=gene-C9E96_RS06265;Dbxref=GenBank:WP_000252975.1;Name=WP_000252975.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460861.1;locus_tag=C9E96_RS06265;product=MAPEG family protein;protein_id=WP_000252975.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	21614	22432	.	-	.	ID=gene-C9E96_RS06270;Name=C9E96_RS06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06270;old_locus_tag=C9E96_06420
NZ_PYJX01000073.1	Protein Homology	CDS	21614	22432	.	-	0	ID=cds-WP_000639226.1;Parent=gene-C9E96_RS06270;Dbxref=GenBank:WP_000639226.1;Name=WP_000639226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460860.1;locus_tag=C9E96_RS06270;product=DUF72 domain-containing protein;protein_id=WP_000639226.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	22429	22995	.	-	.	ID=gene-C9E96_RS06275;Name=C9E96_RS06275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06275;old_locus_tag=C9E96_06425
NZ_PYJX01000073.1	Protein Homology	CDS	22429	22995	.	-	0	ID=cds-WP_000916144.1;Parent=gene-C9E96_RS06275;Dbxref=GenBank:WP_000916144.1;Name=WP_000916144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460859.1;locus_tag=C9E96_RS06275;product=hydrolase;protein_id=WP_000916144.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	23320	25092	.	+	.	ID=gene-C9E96_RS06280;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=C9E96_RS06280;old_locus_tag=C9E96_06430
NZ_PYJX01000073.1	Protein Homology	CDS	23320	25092	.	+	0	ID=cds-WP_001258629.1;Parent=gene-C9E96_RS06280;Dbxref=GenBank:WP_001258629.1;Name=WP_001258629.1;Ontology_term=GO:0006422,GO:0004815,GO:0005524,GO:0005737;gbkey=CDS;gene=aspS;go_component=cytoplasm|0005737||IEA;go_function=aspartate-tRNA ligase activity|0004815||IEA,ATP binding|0005524||IEA;go_process=aspartyl-tRNA aminoacylation|0006422||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460858.1;locus_tag=C9E96_RS06280;product=aspartate--tRNA ligase;protein_id=WP_001258629.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	25186	25638	.	+	.	ID=gene-C9E96_RS06285;Name=nudB;gbkey=Gene;gene=nudB;gene_biotype=protein_coding;locus_tag=C9E96_RS06285;old_locus_tag=C9E96_06435
NZ_PYJX01000073.1	Protein Homology	CDS	25186	25638	.	+	0	ID=cds-WP_000653693.1;Parent=gene-C9E96_RS06285;Dbxref=GenBank:WP_000653693.1;Name=WP_000653693.1;Ontology_term=GO:0046656,GO:0008828,GO:0019177;gbkey=CDS;gene=nudB;go_function=dATP diphosphatase activity|0008828||IEA,dihydroneopterin triphosphate pyrophosphohydrolase activity|0019177||IEA;go_process=folic acid biosynthetic process|0046656||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460857.1;locus_tag=C9E96_RS06285;product=dihydroneopterin triphosphate diphosphatase;protein_id=WP_000653693.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	25668	26408	.	+	.	ID=gene-C9E96_RS06290;Name=C9E96_RS06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06290;old_locus_tag=C9E96_06440
NZ_PYJX01000073.1	Protein Homology	CDS	25668	26408	.	+	0	ID=cds-WP_000907242.1;Parent=gene-C9E96_RS06290;Dbxref=GenBank:WP_000907242.1;Name=WP_000907242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000907250.1;locus_tag=C9E96_RS06290;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_000907242.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	26445	26966	.	+	.	ID=gene-C9E96_RS06295;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=C9E96_RS06295;old_locus_tag=C9E96_06445
NZ_PYJX01000073.1	Protein Homology	CDS	26445	26966	.	+	0	ID=cds-WP_080204004.1;Parent=gene-C9E96_RS06295;Dbxref=GenBank:WP_080204004.1;Name=WP_080204004.1;Ontology_term=GO:0006310,GO:0008821;gbkey=CDS;gene=ruvC;go_function=crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005068993.1;locus_tag=C9E96_RS06295;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_080204004.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	26968	27567	.	-	.	ID=gene-C9E96_RS06300;Name=C9E96_RS06300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06300;old_locus_tag=C9E96_06450
NZ_PYJX01000073.1	Protein Homology	CDS	26968	27567	.	-	0	ID=cds-WP_080219727.1;Parent=gene-C9E96_RS06300;Dbxref=GenBank:WP_080219727.1;Name=WP_080219727.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460854.1;locus_tag=C9E96_RS06300;product=YebB family permuted papain-like enzyme;protein_id=WP_080219727.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	27777	28469	.	+	.	ID=gene-C9E96_RS06305;Name=C9E96_RS06305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06305;old_locus_tag=C9E96_06455
NZ_PYJX01000073.1	Protein Homology	CDS	27777	28469	.	+	0	ID=cds-WP_167850625.1;Parent=gene-C9E96_RS06305;Dbxref=GenBank:WP_167850625.1;Name=WP_167850625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000227317.1;locus_tag=C9E96_RS06305;product=hypothetical protein;protein_id=WP_167850625.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	28829	29440	.	+	.	ID=gene-C9E96_RS06310;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=C9E96_RS06310;old_locus_tag=C9E96_06460
NZ_PYJX01000073.1	Protein Homology	CDS	28829	29440	.	+	0	ID=cds-WP_097377048.1;Parent=gene-C9E96_RS06310;Dbxref=GenBank:WP_097377048.1;Name=WP_097377048.1;Ontology_term=GO:0006281,GO:0006310,GO:0003678,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=DNA helicase activity|0003678||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012131997.1;locus_tag=C9E96_RS06310;product=Holliday junction branch migration protein RuvA;protein_id=WP_097377048.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	29449	30459	.	+	.	ID=gene-C9E96_RS06315;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=C9E96_RS06315;old_locus_tag=C9E96_06465
NZ_PYJX01000073.1	Protein Homology	CDS	29449	30459	.	+	0	ID=cds-WP_000568504.1;Parent=gene-C9E96_RS06315;Dbxref=GenBank:WP_000568504.1;Name=WP_000568504.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460851.1;locus_tag=C9E96_RS06315;product=Holliday junction branch migration DNA helicase RuvB;protein_id=WP_000568504.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	30538	31323	.	-	.	ID=gene-C9E96_RS06320;Name=znuB;gbkey=Gene;gene=znuB;gene_biotype=protein_coding;locus_tag=C9E96_RS06320;old_locus_tag=C9E96_06470
NZ_PYJX01000073.1	Protein Homology	CDS	30538	31323	.	-	0	ID=cds-WP_000571510.1;Parent=gene-C9E96_RS06320;Dbxref=GenBank:WP_000571510.1;Name=WP_000571510.1;Ontology_term=GO:0055085,GO:0042626;gbkey=CDS;gene=znuB;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460850.1;locus_tag=C9E96_RS06320;product=zinc ABC transporter permease subunit ZnuB;protein_id=WP_000571510.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	31320	32075	.	-	.	ID=gene-C9E96_RS06325;Name=znuC;gbkey=Gene;gene=znuC;gene_biotype=protein_coding;locus_tag=C9E96_RS06325;old_locus_tag=C9E96_06475
NZ_PYJX01000073.1	Protein Homology	CDS	31320	32075	.	-	0	ID=cds-WP_000203013.1;Parent=gene-C9E96_RS06325;Dbxref=GenBank:WP_000203013.1;Name=WP_000203013.1;Ontology_term=GO:0006829,GO:0005524,GO:0015633;gbkey=CDS;gene=znuC;go_function=ATP binding|0005524||IEA,ABC-type zinc transporter activity|0015633||IEA;go_process=zinc ion transport|0006829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310595.1;locus_tag=C9E96_RS06325;product=zinc ABC transporter ATP-binding protein ZnuC;protein_id=WP_000203013.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	32154	33098	.	+	.	ID=gene-C9E96_RS06330;Name=znuA;gbkey=Gene;gene=znuA;gene_biotype=protein_coding;locus_tag=C9E96_RS06330;old_locus_tag=C9E96_06480
NZ_PYJX01000073.1	Protein Homology	CDS	32154	33098	.	+	0	ID=cds-WP_135493984.1;Parent=gene-C9E96_RS06330;Dbxref=GenBank:WP_135493984.1;Name=WP_135493984.1;Ontology_term=GO:0006829,GO:0046872;gbkey=CDS;gene=znuA;go_function=metal ion binding|0046872||IEA;go_process=zinc ion transport|0006829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416371.4;locus_tag=C9E96_RS06330;product=zinc ABC transporter substrate-binding protein ZnuA;protein_id=WP_135493984.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	33114	34433	.	+	.	ID=gene-C9E96_RS06335;Name=mepM;gbkey=Gene;gene=mepM;gene_biotype=protein_coding;locus_tag=C9E96_RS06335;old_locus_tag=C9E96_06485
NZ_PYJX01000073.1	Protein Homology	CDS	33114	34433	.	+	0	ID=cds-WP_001184028.1;Parent=gene-C9E96_RS06335;Dbxref=GenBank:WP_001184028.1;Name=WP_001184028.1;Ontology_term=GO:0042834;gbkey=CDS;gene=mepM;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460847.1;locus_tag=C9E96_RS06335;product=murein DD-endopeptidase MepM;protein_id=WP_001184028.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	34550	35521	.	+	.	ID=gene-C9E96_RS06340;Name=lpxM;gbkey=Gene;gene=lpxM;gene_biotype=protein_coding;gene_synonym=msbB;locus_tag=C9E96_RS06340;old_locus_tag=C9E96_06495
NZ_PYJX01000073.1	Protein Homology	CDS	34550	35521	.	+	0	ID=cds-WP_000448401.1;Parent=gene-C9E96_RS06340;Dbxref=GenBank:WP_000448401.1;Name=WP_000448401.1;Note=LpxM is lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase%2C an enzyme characterized in Escherichia coli and involved in biosynthesis of the form of lipid A found in that species and some closely related species.;Ontology_term=GO:0009103,GO:0016747,GO:0009276,GO:0016020;gbkey=CDS;gene=lpxM;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,membrane|0016020||IEA;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460846.1;locus_tag=C9E96_RS06340;product=lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase;protein_id=WP_000448401.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	35594	37036	.	-	.	ID=gene-C9E96_RS06345;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=C9E96_RS06345;old_locus_tag=C9E96_06500
NZ_PYJX01000073.1	Protein Homology	CDS	35594	37036	.	-	0	ID=cds-WP_000091156.1;Parent=gene-C9E96_RS06345;Dbxref=GenBank:WP_000091156.1;Name=WP_000091156.1;Ontology_term=GO:0006096,GO:0000287,GO:0004743,GO:0030955;gbkey=CDS;gene=pyk;go_function=magnesium ion binding|0000287||IEA,pyruvate kinase activity|0004743||IEA,potassium ion binding|0030955||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120709.1;locus_tag=C9E96_RS06345;product=pyruvate kinase;protein_id=WP_000091156.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	37160	38029	.	-	.	ID=gene-C9E96_RS06350;Name=C9E96_RS06350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06350;old_locus_tag=C9E96_06505
NZ_PYJX01000073.1	Protein Homology	CDS	37160	38029	.	-	0	ID=cds-WP_023194353.1;Parent=gene-C9E96_RS06350;Dbxref=GenBank:WP_023194353.1;Name=WP_023194353.1;Ontology_term=GO:0006351,GO:0006355,GO:0003677,GO:0003700,GO:0097367;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,carbohydrate derivative binding|0097367||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460844.1;locus_tag=C9E96_RS06350;product=MurR/RpiR family transcriptional regulator;protein_id=WP_023194353.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	38371	39846	.	+	.	ID=gene-C9E96_RS06360;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=C9E96_RS06360;old_locus_tag=C9E96_06515
NZ_PYJX01000073.1	Protein Homology	CDS	38371	39846	.	+	0	ID=cds-WP_000301711.1;Parent=gene-C9E96_RS06360;Dbxref=GenBank:WP_000301711.1;Name=WP_000301711.1;Ontology_term=GO:0006006,GO:0006098,GO:0004345,GO:0016614,GO:0050661;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA,oxidoreductase activity%2C acting on CH-OH group of donors|0016614||IEA,NADP binding|0050661||IEA;go_process=glucose metabolic process|0006006||IEA,pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120712.1;locus_tag=C9E96_RS06360;product=glucose-6-phosphate dehydrogenase;protein_id=WP_000301711.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	40081	41892	.	+	.	ID=gene-C9E96_RS06365;Name=edd;gbkey=Gene;gene=edd;gene_biotype=protein_coding;locus_tag=C9E96_RS06365;old_locus_tag=C9E96_06520
NZ_PYJX01000073.1	Protein Homology	CDS	40081	41892	.	+	0	ID=cds-WP_050376080.1;Parent=gene-C9E96_RS06365;Dbxref=GenBank:WP_050376080.1;Name=WP_050376080.1;Ontology_term=GO:0009255,GO:0004456;gbkey=CDS;gene=edd;go_function=phosphogluconate dehydratase activity|0004456||IEA;go_process=Entner-Doudoroff pathway through 6-phosphogluconate|0009255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460842.1;locus_tag=C9E96_RS06365;product=phosphogluconate dehydratase;protein_id=WP_050376080.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	41930	42571	.	+	.	ID=gene-C9E96_RS06370;Name=kdgA;gbkey=Gene;gene=kdgA;gene_biotype=protein_coding;gene_synonym=eda;locus_tag=C9E96_RS06370;old_locus_tag=C9E96_06525
NZ_PYJX01000073.1	Protein Homology	CDS	41930	42571	.	+	0	ID=cds-WP_000800494.1;Parent=gene-C9E96_RS06370;Dbxref=GenBank:WP_000800494.1;Name=WP_000800494.1;gbkey=CDS;gene=kdgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460841.1;locus_tag=C9E96_RS06370;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_000800494.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	42671	43849	.	-	.	ID=gene-C9E96_RS06375;Name=purT;gbkey=Gene;gene=purT;gene_biotype=protein_coding;locus_tag=C9E96_RS06375;old_locus_tag=C9E96_06530
NZ_PYJX01000073.1	Protein Homology	CDS	42671	43849	.	-	0	ID=cds-WP_063916965.1;Parent=gene-C9E96_RS06375;Dbxref=GenBank:WP_063916965.1;Name=WP_063916965.1;Ontology_term=GO:0009152,GO:0000287,GO:0004644,GO:0005524;gbkey=CDS;gene=purT;go_function=magnesium ion binding|0000287||IEA,phosphoribosylglycinamide formyltransferase activity|0004644||IEA,ATP binding|0005524||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460840.1;locus_tag=C9E96_RS06375;product=formate-dependent phosphoribosylglycinamide formyltransferase;protein_id=WP_063916965.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	43980	44270	.	+	.	ID=gene-C9E96_RS06380;Name=yebG;gbkey=Gene;gene=yebG;gene_biotype=protein_coding;locus_tag=C9E96_RS06380;old_locus_tag=C9E96_06535
NZ_PYJX01000073.1	Protein Homology	CDS	43980	44270	.	+	0	ID=cds-WP_000257723.1;Parent=gene-C9E96_RS06380;Dbxref=GenBank:WP_000257723.1;Name=WP_000257723.1;gbkey=CDS;gene=yebG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460839.1;locus_tag=C9E96_RS06380;product=DNA damage-inducible protein YebG;protein_id=WP_000257723.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	44338	44691	.	+	.	ID=gene-C9E96_RS06385;Name=yebF;gbkey=Gene;gene=yebF;gene_biotype=protein_coding;locus_tag=C9E96_RS06385;old_locus_tag=C9E96_06540
NZ_PYJX01000073.1	Protein Homology	CDS	44338	44691	.	+	0	ID=cds-WP_001042123.1;Parent=gene-C9E96_RS06385;Dbxref=GenBank:WP_001042123.1;Name=WP_001042123.1;gbkey=CDS;gene=yebF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460838.1;locus_tag=C9E96_RS06385;product=protein YebF;protein_id=WP_001042123.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	44785	45444	.	+	.	ID=gene-C9E96_RS06390;Name=C9E96_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06390;old_locus_tag=C9E96_06545
NZ_PYJX01000073.1	Protein Homology	CDS	44785	45444	.	+	0	ID=cds-WP_000024707.1;Parent=gene-C9E96_RS06390;Dbxref=GenBank:WP_000024707.1;Name=WP_000024707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460837.1;locus_tag=C9E96_RS06390;product=tellurite resistance TerB family protein;protein_id=WP_000024707.1;transl_table=11
NZ_PYJX01000073.1	RefSeq	gene	45658	47276	.	+	.	ID=gene-C9E96_RS06395;Name=C9E96_RS06395;end_range=47276,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06395;old_locus_tag=C9E96_06550;partial=true
NZ_PYJX01000073.1	Protein Homology	CDS	45658	47276	.	+	0	ID=cds-WP_135493986.1;Parent=gene-C9E96_RS06395;Dbxref=GenBank:WP_135493986.1;Name=WP_135493986.1;Ontology_term=GO:0006508,GO:0008236;end_range=47276,.;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460836.1;locus_tag=C9E96_RS06395;partial=true;product=prolyl oligopeptidase family serine peptidase;protein_id=WP_135493986.1;transl_table=11
##sequence-region NZ_PYJX01000017.1 1 310
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000017.1	RefSeq	region	1	310	.	+	.	ID=NZ_PYJX01000017.1:1..310;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000017.1	RefSeq	pseudogene	1	310	.	+	.	ID=gene-C9E96_RS01165;Name=C9E96_RS01165;end_range=310,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01165;old_locus_tag=C9E96_01195;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000017.1	Protein Homology	CDS	1	310	.	+	2	ID=cds-C9E96_RS01165;Parent=gene-C9E96_RS01165;Note=3'-5'exoribonuclease that acts nonspecifically on poly(A)%2C poly(U) and ribosomal RNAs%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=310,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463229.1;locus_tag=C9E96_RS01165;partial=true;product=ribonuclease R;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000027.1 1 305
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000027.1	RefSeq	region	1	305	.	+	.	ID=NZ_PYJX01000027.1:1..305;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000027.1	RefSeq	pseudogene	1	305	.	-	.	ID=gene-C9E96_RS01445;Name=C9E96_RS01445;end_range=305,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01445;old_locus_tag=C9E96_01475;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000027.1	Protein Homology	CDS	1	305	.	-	0	ID=cds-C9E96_RS01445;Parent=gene-C9E96_RS01445;Note=structural flagella protein%3B individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella%2C termed phase 1 and phase 2%2C each specified by separate structural genes%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=305,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461698.1;locus_tag=C9E96_RS01445;partial=true;product=flagellin FliC;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000177.1 1 298
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000177.1	RefSeq	region	1	298	.	+	.	ID=NZ_PYJX01000177.1:1..298;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000177.1	RefSeq	pseudogene	1	298	.	-	.	ID=gene-C9E96_RS16850;Name=C9E96_RS16850;end_range=298,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS16850;old_locus_tag=C9E96_17275;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000177.1	Protein Homology	CDS	1	298	.	-	2	ID=cds-C9E96_RS16850;Parent=gene-C9E96_RS16850;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=298,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9E96_RS16850;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000001.1 1 295
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000001.1	RefSeq	region	1	295	.	+	.	ID=NZ_PYJX01000001.1:1..295;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000001.1	RefSeq	gene	2	77	.	+	.	ID=gene-C9E96_RS00005;Name=C9E96_RS00005;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS00005;old_locus_tag=C9E96_00005
NZ_PYJX01000001.1	tRNAscan-SE	tRNA	2	77	.	+	.	ID=rna-C9E96_RS00005;Parent=gene-C9E96_RS00005;anticodon=(pos:35..37);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS00005;product=tRNA-Lys
NZ_PYJX01000001.1	tRNAscan-SE	exon	2	77	.	+	.	ID=exon-C9E96_RS00005-1;Parent=rna-C9E96_RS00005;anticodon=(pos:35..37);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS00005;product=tRNA-Lys
NZ_PYJX01000001.1	RefSeq	gene	220	295	.	+	.	ID=gene-C9E96_RS00010;Name=C9E96_RS00010;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS00010;old_locus_tag=C9E96_00010
NZ_PYJX01000001.1	tRNAscan-SE	tRNA	220	295	.	+	.	ID=rna-C9E96_RS00010;Parent=gene-C9E96_RS00010;anticodon=(pos:253..255);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS00010;product=tRNA-Lys
NZ_PYJX01000001.1	tRNAscan-SE	exon	220	295	.	+	.	ID=exon-C9E96_RS00010-1;Parent=rna-C9E96_RS00010;anticodon=(pos:253..255);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS00010;product=tRNA-Lys
##sequence-region NZ_PYJX01000020.1 1 295
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000020.1	RefSeq	region	1	295	.	+	.	ID=NZ_PYJX01000020.1:1..295;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000020.1	RefSeq	gene	1	79	.	+	.	ID=gene-C9E96_RS24480;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9E96_RS24480;partial=true;start_range=.,1
NZ_PYJX01000020.1	cmsearch	rRNA	1	79	.	+	.	ID=rna-C9E96_RS24480;Parent=gene-C9E96_RS24480;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS24480;partial=true;product=5S ribosomal RNA;start_range=.,1
NZ_PYJX01000020.1	cmsearch	exon	1	79	.	+	.	ID=exon-C9E96_RS24480-1;Parent=rna-C9E96_RS24480;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS24480;partial=true;product=5S ribosomal RNA;start_range=.,1
NZ_PYJX01000020.1	RefSeq	gene	94	169	.	+	.	ID=gene-C9E96_RS01280;Name=C9E96_RS01280;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS01280;old_locus_tag=C9E96_01310
NZ_PYJX01000020.1	tRNAscan-SE	tRNA	94	169	.	+	.	ID=rna-C9E96_RS01280;Parent=gene-C9E96_RS01280;anticodon=(pos:127..129);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS01280;product=tRNA-Thr
NZ_PYJX01000020.1	tRNAscan-SE	exon	94	169	.	+	.	ID=exon-C9E96_RS01280-1;Parent=rna-C9E96_RS01280;anticodon=(pos:127..129);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS01280;product=tRNA-Thr
NZ_PYJX01000020.1	RefSeq	gene	209	295	.	+	.	ID=gene-C9E96_RS01285;Name=rrf;end_range=295,.;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9E96_RS01285;old_locus_tag=C9E96_01315;partial=true
NZ_PYJX01000020.1	cmsearch	rRNA	209	295	.	+	.	ID=rna-C9E96_RS01285;Parent=gene-C9E96_RS01285;Dbxref=RFAM:RF00001;end_range=295,.;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS01285;partial=true;product=5S ribosomal RNA
NZ_PYJX01000020.1	cmsearch	exon	209	295	.	+	.	ID=exon-C9E96_RS01285-1;Parent=rna-C9E96_RS01285;Dbxref=RFAM:RF00001;end_range=295,.;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS01285;partial=true;product=5S ribosomal RNA
##sequence-region NZ_PYJX01000221.1 1 286
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000221.1	RefSeq	region	1	286	.	+	.	ID=NZ_PYJX01000221.1:1..286;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000221.1	RefSeq	gene	1	105	.	+	.	ID=gene-C9E96_RS21845;Name=C9E96_RS21845;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS21845;old_locus_tag=C9E96_22385;partial=true;start_range=.,1
NZ_PYJX01000221.1	cmsearch	rRNA	1	105	.	+	.	ID=rna-C9E96_RS21845;Parent=gene-C9E96_RS21845;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS21845;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000221.1	cmsearch	exon	1	105	.	+	.	ID=exon-C9E96_RS21845-1;Parent=rna-C9E96_RS21845;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS21845;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000221.1	RefSeq	gene	199	286	.	+	.	ID=gene-C9E96_RS21850;Name=rrf;end_range=286,.;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9E96_RS21850;old_locus_tag=C9E96_22390;partial=true
NZ_PYJX01000221.1	cmsearch	rRNA	199	286	.	+	.	ID=rna-C9E96_RS21850;Parent=gene-C9E96_RS21850;Dbxref=RFAM:RF00001;end_range=286,.;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS21850;partial=true;product=5S ribosomal RNA
NZ_PYJX01000221.1	cmsearch	exon	199	286	.	+	.	ID=exon-C9E96_RS21850-1;Parent=rna-C9E96_RS21850;Dbxref=RFAM:RF00001;end_range=286,.;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS21850;partial=true;product=5S ribosomal RNA
##sequence-region NZ_PYJX01000154.1 1 46914
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000154.1	RefSeq	region	1	46914	.	+	.	ID=NZ_PYJX01000154.1:1..46914;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000154.1	RefSeq	pseudogene	57	1133	.	-	.	ID=gene-C9E96_RS13605;Name=dtpA;gbkey=Gene;gene=dtpA;gene_biotype=pseudogene;locus_tag=C9E96_RS13605;old_locus_tag=C9E96_13935;partial=true;pseudo=true;start_range=.,57
NZ_PYJX01000154.1	Protein Homology	CDS	57	1133	.	-	0	ID=cds-C9E96_RS13605;Parent=gene-C9E96_RS13605;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0015833,GO:0055085,GO:1904680,GO:0016020;gbkey=CDS;gene=dtpA;go_component=membrane|0016020||IEA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460415.1;locus_tag=C9E96_RS13605;partial=true;product=dipeptide/tripeptide permease DtpA;pseudo=true;start_range=.,57;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	1735	2370	.	-	.	ID=gene-C9E96_RS13610;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=C9E96_RS13610;old_locus_tag=C9E96_13940
NZ_PYJX01000154.1	Protein Homology	CDS	1735	2370	.	-	0	ID=cds-WP_001030325.1;Parent=gene-C9E96_RS13610;Dbxref=GenBank:WP_001030325.1;Name=WP_001030325.1;Ontology_term=GO:0006284,GO:0003906;gbkey=CDS;gene=nth;go_function=DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460416.1;locus_tag=C9E96_RS13610;product=endonuclease III;protein_id=WP_001030325.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	2370	3062	.	-	.	ID=gene-C9E96_RS13615;Name=C9E96_RS13615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13615;old_locus_tag=C9E96_13945
NZ_PYJX01000154.1	Protein Homology	CDS	2370	3062	.	-	0	ID=cds-WP_001289628.1;Parent=gene-C9E96_RS13615;Dbxref=GenBank:WP_001289628.1;Name=WP_001289628.1;Ontology_term=GO:0022900;gbkey=CDS;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460417.1;locus_tag=C9E96_RS13615;product=electron transport complex subunit E;protein_id=WP_001289628.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	3065	3685	.	-	.	ID=gene-C9E96_RS13620;Name=rsxG;gbkey=Gene;gene=rsxG;gene_biotype=protein_coding;locus_tag=C9E96_RS13620;old_locus_tag=C9E96_13950
NZ_PYJX01000154.1	Protein Homology	CDS	3065	3685	.	-	0	ID=cds-WP_080203987.1;Parent=gene-C9E96_RS13620;Dbxref=GenBank:WP_080203987.1;Name=WP_080203987.1;Ontology_term=GO:0022900,GO:0009055,GO:0010181,GO:0016020;gbkey=CDS;gene=rsxG;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460418.1;locus_tag=C9E96_RS13620;product=electron transport complex subunit RsxG;protein_id=WP_080203987.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	3689	4747	.	-	.	ID=gene-C9E96_RS13625;Name=rsxD;gbkey=Gene;gene=rsxD;gene_biotype=protein_coding;locus_tag=C9E96_RS13625;old_locus_tag=C9E96_13955
NZ_PYJX01000154.1	Protein Homology	CDS	3689	4747	.	-	0	ID=cds-WP_000231963.1;Parent=gene-C9E96_RS13625;Dbxref=GenBank:WP_000231963.1;Name=WP_000231963.1;Ontology_term=GO:0022900,GO:0055085,GO:0016020;gbkey=CDS;gene=rsxD;go_component=membrane|0016020||IEA;go_process=electron transport chain|0022900||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460419.1;locus_tag=C9E96_RS13625;product=electron transport complex subunit RsxD;protein_id=WP_000231963.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	4748	6862	.	-	.	ID=gene-C9E96_RS13630;Name=rsxC;gbkey=Gene;gene=rsxC;gene_biotype=protein_coding;locus_tag=C9E96_RS13630;old_locus_tag=C9E96_13960
NZ_PYJX01000154.1	Protein Homology	CDS	4748	6862	.	-	0	ID=cds-WP_135494302.1;Parent=gene-C9E96_RS13630;Dbxref=GenBank:WP_135494302.1;Name=WP_135494302.1;Ontology_term=GO:0009055,GO:0051539,GO:0016020;gbkey=CDS;gene=rsxC;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460420.1;locus_tag=C9E96_RS13630;product=electron transport complex subunit RsxC;protein_id=WP_135494302.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	6855	7433	.	-	.	ID=gene-C9E96_RS13635;Name=rsxB;gbkey=Gene;gene=rsxB;gene_biotype=protein_coding;locus_tag=C9E96_RS13635;old_locus_tag=C9E96_13965
NZ_PYJX01000154.1	Protein Homology	CDS	6855	7433	.	-	0	ID=cds-WP_001092600.1;Parent=gene-C9E96_RS13635;Dbxref=GenBank:WP_001092600.1;Name=WP_001092600.1;Ontology_term=GO:0022900,GO:0009055,GO:0051536;gbkey=CDS;gene=rsxB;go_function=electron transfer activity|0009055||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460421.1;locus_tag=C9E96_RS13635;product=electron transport complex subunit RsxB;protein_id=WP_001092600.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	7433	8014	.	-	.	ID=gene-C9E96_RS13640;Name=rsxA;gbkey=Gene;gene=rsxA;gene_biotype=protein_coding;locus_tag=C9E96_RS13640;old_locus_tag=C9E96_13970
NZ_PYJX01000154.1	Protein Homology	CDS	7433	8014	.	-	0	ID=cds-WP_000133179.1;Parent=gene-C9E96_RS13640;Dbxref=GenBank:WP_000133179.1;Name=WP_000133179.1;Ontology_term=GO:0022900,GO:0016020;gbkey=CDS;gene=rsxA;go_component=membrane|0016020||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017456621.1;locus_tag=C9E96_RS13640;product=electron transport complex subunit RsxA;protein_id=WP_000133179.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	8091	8531	.	-	.	ID=gene-C9E96_RS13645;Name=C9E96_RS13645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13645;old_locus_tag=C9E96_13975
NZ_PYJX01000154.1	Protein Homology	CDS	8091	8531	.	-	0	ID=cds-WP_000214061.1;Parent=gene-C9E96_RS13645;Dbxref=GenBank:WP_000214061.1;Name=WP_000214061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460423.1;locus_tag=C9E96_RS13645;product=DUF2569 domain-containing protein;protein_id=WP_000214061.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	8620	8835	.	-	.	ID=gene-C9E96_RS13650;Name=ydgT;gbkey=Gene;gene=ydgT;gene_biotype=protein_coding;locus_tag=C9E96_RS13650;old_locus_tag=C9E96_13980
NZ_PYJX01000154.1	Protein Homology	CDS	8620	8835	.	-	0	ID=cds-WP_000217946.1;Parent=gene-C9E96_RS13650;Dbxref=GenBank:WP_000217946.1;Name=WP_000217946.1;gbkey=CDS;gene=ydgT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460424.3;locus_tag=C9E96_RS13650;product=transcription modulator YdgT;protein_id=WP_000217946.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	9134	9259	.	-	.	ID=gene-C9E96_RS13655;Name=blr;gbkey=Gene;gene=blr;gene_biotype=protein_coding;locus_tag=C9E96_RS13655;old_locus_tag=C9E96_13985
NZ_PYJX01000154.1	Protein Homology	CDS	9134	9259	.	-	0	ID=cds-WP_001708800.1;Parent=gene-C9E96_RS13655;Dbxref=GenBank:WP_001708800.1;Name=WP_001708800.1;gbkey=CDS;gene=blr;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025303.1;locus_tag=C9E96_RS13655;product=division septum protein Blr;protein_id=WP_001708800.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	9467	10507	.	+	.	ID=gene-C9E96_RS13660;Name=C9E96_RS13660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13660;old_locus_tag=C9E96_13990
NZ_PYJX01000154.1	Protein Homology	CDS	9467	10507	.	+	0	ID=cds-WP_000998242.1;Parent=gene-C9E96_RS13660;Dbxref=GenBank:WP_000998242.1;Name=WP_000998242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310359.2;locus_tag=C9E96_RS13660;product=oxidoreductase;protein_id=WP_000998242.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	10581	11582	.	-	.	ID=gene-C9E96_RS13665;Name=add;gbkey=Gene;gene=add;gene_biotype=protein_coding;locus_tag=C9E96_RS13665;old_locus_tag=C9E96_13995
NZ_PYJX01000154.1	Protein Homology	CDS	10581	11582	.	-	0	ID=cds-WP_000565566.1;Parent=gene-C9E96_RS13665;Dbxref=GenBank:WP_000565566.1;Name=WP_000565566.1;Ontology_term=GO:0009168,GO:0004000;gbkey=CDS;gene=add;go_function=adenosine deaminase activity|0004000||IEA;go_process=purine ribonucleoside monophosphate biosynthetic process|0009168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460426.1;locus_tag=C9E96_RS13665;product=adenosine deaminase;protein_id=WP_000565566.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	pseudogene	11808	11939	.	-	.	ID=gene-C9E96_RS13670;Name=C9E96_RS13670;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13670;old_locus_tag=C9E96_14000;partial=true;pseudo=true;start_range=.,11808
NZ_PYJX01000154.1	Protein Homology	CDS	11808	11939	.	-	0	ID=cds-C9E96_RS13670;Parent=gene-C9E96_RS13670;Note=catalyzes the formation of homocysteine and pyruvate from cystathionine%3B also acts a a negative regulator for the mal regulon but interacting with the transcriptional activator MalT%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000459379.1;locus_tag=C9E96_RS13670;partial=true;product=transcriptional regulator;pseudo=true;start_range=.,11808;transl_table=11
NZ_PYJX01000154.1	RefSeq	pseudogene	11949	12168	.	-	.	ID=gene-C9E96_RS13675;Name=C9E96_RS13675;end_range=12168,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13675;old_locus_tag=C9E96_14005;partial=true;pseudo=true
NZ_PYJX01000154.1	Protein Homology	CDS	11949	12168	.	-	0	ID=cds-C9E96_RS13675;Parent=gene-C9E96_RS13675;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009401,GO:0008982;end_range=12168,.;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310356.1;locus_tag=C9E96_RS13675;partial=true;product=glucose PTS transporter subunit EIIB;pseudo=true;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	12287	13795	.	-	.	ID=gene-C9E96_RS13680;Name=C9E96_RS13680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13680;old_locus_tag=C9E96_14010
NZ_PYJX01000154.1	Protein Homology	CDS	12287	13795	.	-	0	ID=cds-WP_135494304.1;Parent=gene-C9E96_RS13680;Dbxref=GenBank:WP_135494304.1;Name=WP_135494304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460427.1;locus_tag=C9E96_RS13680;product=YdgA family protein;protein_id=WP_135494304.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	13898	15073	.	-	.	ID=gene-C9E96_RS13685;Name=manA;gbkey=Gene;gene=manA;gene_biotype=protein_coding;locus_tag=C9E96_RS13685;old_locus_tag=C9E96_14015
NZ_PYJX01000154.1	Protein Homology	CDS	13898	15073	.	-	0	ID=cds-WP_001170618.1;Parent=gene-C9E96_RS13685;Dbxref=GenBank:WP_001170618.1;Name=WP_001170618.1;Ontology_term=GO:0009298,GO:0004476,GO:0008270;gbkey=CDS;gene=manA;go_function=mannose-6-phosphate isomerase activity|0004476||IEA,zinc ion binding|0008270||IEA;go_process=GDP-mannose biosynthetic process|0009298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460428.1;locus_tag=C9E96_RS13685;product=mannose-6-phosphate isomerase;protein_id=WP_001170618.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	15273	16919	.	+	.	ID=gene-C9E96_RS13690;Name=fumB;gbkey=Gene;gene=fumB;gene_biotype=protein_coding;locus_tag=C9E96_RS13690;old_locus_tag=C9E96_14020
NZ_PYJX01000154.1	Protein Homology	CDS	15273	16919	.	+	0	ID=cds-WP_000066609.1;Parent=gene-C9E96_RS13690;Dbxref=GenBank:WP_000066609.1;Name=WP_000066609.1;gbkey=CDS;gene=fumB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000066594.1;locus_tag=C9E96_RS13690;product=class I fumarate hydratase;protein_id=WP_000066609.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	17087	18490	.	+	.	ID=gene-C9E96_RS13695;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=C9E96_RS13695;old_locus_tag=C9E96_14025
NZ_PYJX01000154.1	Protein Homology	CDS	17087	18490	.	+	0	ID=cds-WP_000259117.1;Parent=gene-C9E96_RS13695;Dbxref=GenBank:WP_000259117.1;Name=WP_000259117.1;Ontology_term=GO:0006106,GO:0004333,GO:0045239;gbkey=CDS;gene=fumC;go_component=tricarboxylic acid cycle heteromeric enzyme complex|0045239||IEA;go_function=fumarate hydratase activity|0004333||IEA;go_process=fumarate metabolic process|0006106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460430.1;locus_tag=C9E96_RS13695;product=class II fumarate hydratase;protein_id=WP_000259117.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	18487	19416	.	-	.	ID=gene-C9E96_RS13700;Name=tus;gbkey=Gene;gene=tus;gene_biotype=protein_coding;locus_tag=C9E96_RS13700;old_locus_tag=C9E96_14030
NZ_PYJX01000154.1	Protein Homology	CDS	18487	19416	.	-	0	ID=cds-WP_080203984.1;Parent=gene-C9E96_RS13700;Dbxref=GenBank:WP_080203984.1;Name=WP_080203984.1;Ontology_term=GO:0006274,GO:0003677,GO:0005737;gbkey=CDS;gene=tus;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA replication termination|0006274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460431.1;locus_tag=C9E96_RS13700;product=DNA replication terminus site-binding protein;protein_id=WP_080203984.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	19492	20793	.	-	.	ID=gene-C9E96_RS13705;Name=rstB;gbkey=Gene;gene=rstB;gene_biotype=protein_coding;locus_tag=C9E96_RS13705;old_locus_tag=C9E96_14035
NZ_PYJX01000154.1	Protein Homology	CDS	19492	20793	.	-	0	ID=cds-WP_080203983.1;Parent=gene-C9E96_RS13705;Dbxref=GenBank:WP_080203983.1;Name=WP_080203983.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=rstB;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460432.1;locus_tag=C9E96_RS13705;product=two-component system sensor histidine kinase RstB;protein_id=WP_080203983.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	20905	22611	.	-	.	ID=gene-C9E96_RS13710;Name=C9E96_RS13710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13710;old_locus_tag=C9E96_14040
NZ_PYJX01000154.1	Protein Homology	CDS	20905	22611	.	-	0	ID=cds-WP_080203982.1;Parent=gene-C9E96_RS13710;Dbxref=GenBank:WP_080203982.1;Name=WP_080203982.1;Ontology_term=GO:0016810,GO:0046872;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460433.1;locus_tag=C9E96_RS13710;product=amidohydrolase;protein_id=WP_080203982.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	22764	23915	.	-	.	ID=gene-C9E96_RS13715;Name=ompS2;gbkey=Gene;gene=ompS2;gene_biotype=protein_coding;locus_tag=C9E96_RS13715;old_locus_tag=C9E96_14045
NZ_PYJX01000154.1	Protein Homology	CDS	22764	23915	.	-	0	ID=cds-WP_001660099.1;Parent=gene-C9E96_RS13715;Dbxref=GenBank:WP_001660099.1;Name=WP_001660099.1;gbkey=CDS;gene=ompS2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460434.1;locus_tag=C9E96_RS13715;product=porin OmpS2;protein_id=WP_001660099.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	24395	25126	.	-	.	ID=gene-C9E96_RS13725;Name=rstA;gbkey=Gene;gene=rstA;gene_biotype=protein_coding;locus_tag=C9E96_RS13725;old_locus_tag=C9E96_14055
NZ_PYJX01000154.1	Protein Homology	CDS	24395	25126	.	-	0	ID=cds-WP_001080048.1;Parent=gene-C9E96_RS13725;Dbxref=GenBank:WP_001080048.1;Name=WP_001080048.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=rstA;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460435.1;locus_tag=C9E96_RS13725;product=two-component system response regulator RstA;protein_id=WP_001080048.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	25253	25588	.	+	.	ID=gene-C9E96_RS13730;Name=C9E96_RS13730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13730;old_locus_tag=C9E96_14060
NZ_PYJX01000154.1	Protein Homology	CDS	25253	25588	.	+	0	ID=cds-WP_000524877.1;Parent=gene-C9E96_RS13730;Dbxref=GenBank:WP_000524877.1;Name=WP_000524877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460436.1;locus_tag=C9E96_RS13730;product=GlpM family protein;protein_id=WP_000524877.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	25650	27032	.	-	.	ID=gene-C9E96_RS13735;Name=C9E96_RS13735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13735;old_locus_tag=C9E96_14065
NZ_PYJX01000154.1	Protein Homology	CDS	25650	27032	.	-	0	ID=cds-WP_000412353.1;Parent=gene-C9E96_RS13735;Dbxref=GenBank:WP_000412353.1;Name=WP_000412353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460437.1;locus_tag=C9E96_RS13735;product=amino acid permease;protein_id=WP_000412353.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	27331	28275	.	-	.	ID=gene-C9E96_RS13740;Name=ydgH;gbkey=Gene;gene=ydgH;gene_biotype=protein_coding;locus_tag=C9E96_RS13740;old_locus_tag=C9E96_14070
NZ_PYJX01000154.1	Protein Homology	CDS	27331	28275	.	-	0	ID=cds-WP_000769302.1;Parent=gene-C9E96_RS13740;Dbxref=GenBank:WP_000769302.1;Name=WP_000769302.1;gbkey=CDS;gene=ydgH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460438.1;locus_tag=C9E96_RS13740;product=DUF1471 family protein YdgH;protein_id=WP_000769302.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	28802	30331	.	+	.	ID=gene-C9E96_RS13745;Name=pntA;gbkey=Gene;gene=pntA;gene_biotype=protein_coding;locus_tag=C9E96_RS13745;old_locus_tag=C9E96_14075
NZ_PYJX01000154.1	Protein Homology	CDS	28802	30331	.	+	0	ID=cds-WP_135494306.1;Parent=gene-C9E96_RS13745;Dbxref=GenBank:WP_135494306.1;Name=WP_135494306.1;Ontology_term=GO:1902600,GO:0008750;gbkey=CDS;gene=pntA;go_function=proton-translocating NAD(P)+ transhydrogenase activity|0008750||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460439.1;locus_tag=C9E96_RS13745;product=Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha;protein_id=WP_135494306.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	30342	31730	.	+	.	ID=gene-C9E96_RS13750;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;locus_tag=C9E96_RS13750;old_locus_tag=C9E96_14080
NZ_PYJX01000154.1	Protein Homology	CDS	30342	31730	.	+	0	ID=cds-WP_000014056.1;Parent=gene-C9E96_RS13750;Dbxref=GenBank:WP_000014056.1;Name=WP_000014056.1;Ontology_term=GO:0008750,GO:0050661,GO:0016020;gbkey=CDS;gene=pntB;go_component=membrane|0016020||IEA;go_function=proton-translocating NAD(P)+ transhydrogenase activity|0008750||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000014033.1;locus_tag=C9E96_RS13750;product=Re/Si-specific NAD(P)(+) transhydrogenase subunit beta;protein_id=WP_000014056.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	31905	32939	.	-	.	ID=gene-C9E96_RS13755;Name=C9E96_RS13755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13755;old_locus_tag=C9E96_14085
NZ_PYJX01000154.1	Protein Homology	CDS	31905	32939	.	-	0	ID=cds-WP_001118268.1;Parent=gene-C9E96_RS13755;Dbxref=GenBank:WP_001118268.1;Name=WP_001118268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460441.1;locus_tag=C9E96_RS13755;product=AI-2E family transporter;protein_id=WP_001118268.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	33075	33245	.	+	.	ID=gene-C9E96_RS24530;Name=C9E96_RS24530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24530;old_locus_tag=C9E96_14090
NZ_PYJX01000154.1	Protein Homology	CDS	33075	33245	.	+	0	ID=cds-WP_001539987.1;Parent=gene-C9E96_RS24530;Dbxref=GenBank:WP_001539987.1;Name=WP_001539987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001334396.1;locus_tag=C9E96_RS24530;product=hypothetical protein;protein_id=WP_001539987.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	33357	33719	.	+	.	ID=gene-C9E96_RS13765;Name=mdtJ;gbkey=Gene;gene=mdtJ;gene_biotype=protein_coding;locus_tag=C9E96_RS13765;old_locus_tag=C9E96_14095
NZ_PYJX01000154.1	Protein Homology	CDS	33357	33719	.	+	0	ID=cds-WP_000500278.1;Parent=gene-C9E96_RS13765;Dbxref=GenBank:WP_000500278.1;Name=WP_000500278.1;Ontology_term=GO:0015848,GO:0015606,GO:0016020;gbkey=CDS;gene=mdtJ;go_component=membrane|0016020||IEA;go_function=spermidine transmembrane transporter activity|0015606||IEA;go_process=spermidine transport|0015848||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460442.1;locus_tag=C9E96_RS13765;product=multidrug/spermidine efflux SMR transporter subunit MdtJ;protein_id=WP_000500278.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	33706	34035	.	+	.	ID=gene-C9E96_RS13770;Name=mdtI;gbkey=Gene;gene=mdtI;gene_biotype=protein_coding;locus_tag=C9E96_RS13770;old_locus_tag=C9E96_14100
NZ_PYJX01000154.1	Protein Homology	CDS	33706	34035	.	+	0	ID=cds-WP_001183821.1;Parent=gene-C9E96_RS13770;Dbxref=GenBank:WP_001183821.1;Name=WP_001183821.1;gbkey=CDS;gene=mdtI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460443.1;locus_tag=C9E96_RS13770;product=multidrug/spermidine efflux SMR transporter subunit MdtI;protein_id=WP_001183821.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	34075	34896	.	-	.	ID=gene-C9E96_RS13775;Name=C9E96_RS13775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13775;old_locus_tag=C9E96_14105
NZ_PYJX01000154.1	Protein Homology	CDS	34075	34896	.	-	0	ID=cds-WP_000549649.1;Parent=gene-C9E96_RS13775;Dbxref=GenBank:WP_000549649.1;Name=WP_000549649.1;Ontology_term=GO:0006508,GO:0004252,GO:0008233,GO:0008236;gbkey=CDS;go_function=serine-type endopeptidase activity|0004252||IEA,peptidase activity|0008233||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460444.1;locus_tag=C9E96_RS13775;product=trypsin-like serine peptidase;protein_id=WP_000549649.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	35165	35416	.	-	.	ID=gene-C9E96_RS13780;Name=asr;gbkey=Gene;gene=asr;gene_biotype=protein_coding;locus_tag=C9E96_RS13780;old_locus_tag=C9E96_14110
NZ_PYJX01000154.1	Protein Homology	CDS	35165	35416	.	-	0	ID=cds-WP_001520947.1;Parent=gene-C9E96_RS13780;Dbxref=GenBank:WP_001520947.1;Name=WP_001520947.1;gbkey=CDS;gene=asr;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310330.2;locus_tag=C9E96_RS13780;product=acid resistance repetitive basic protein Asr;protein_id=WP_001520947.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	35652	35744	.	+	.	ID=gene-C9E96_RS24060;Name=C9E96_RS24060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24060
NZ_PYJX01000154.1	Protein Homology	CDS	35652	35744	.	+	0	ID=cds-WP_001068154.1;Parent=gene-C9E96_RS24060;Dbxref=GenBank:WP_001068154.1;Name=WP_001068154.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033695.1;locus_tag=C9E96_RS24060;product=KPN_01571 family protein;protein_id=WP_001068154.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	35811	37064	.	-	.	ID=gene-C9E96_RS13785;Name=C9E96_RS13785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13785;old_locus_tag=C9E96_14115
NZ_PYJX01000154.1	Protein Homology	CDS	35811	37064	.	-	0	ID=cds-WP_000091796.1;Parent=gene-C9E96_RS13785;Dbxref=GenBank:WP_000091796.1;Name=WP_000091796.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460446.1;locus_tag=C9E96_RS13785;product=MFS transporter;protein_id=WP_000091796.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	37184	38083	.	+	.	ID=gene-C9E96_RS13790;Name=C9E96_RS13790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13790;old_locus_tag=C9E96_14120
NZ_PYJX01000154.1	Protein Homology	CDS	37184	38083	.	+	0	ID=cds-WP_001019577.1;Parent=gene-C9E96_RS13790;Dbxref=GenBank:WP_001019577.1;Name=WP_001019577.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460447.1;locus_tag=C9E96_RS13790;product=LysR family transcriptional regulator;protein_id=WP_001019577.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	38211	39431	.	+	.	ID=gene-C9E96_RS13795;Name=mlc;gbkey=Gene;gene=mlc;gene_biotype=protein_coding;gene_synonym=dgsA;locus_tag=C9E96_RS13795;old_locus_tag=C9E96_14130
NZ_PYJX01000154.1	Protein Homology	CDS	38211	39431	.	+	0	ID=cds-WP_000225095.1;Parent=gene-C9E96_RS13795;Dbxref=GenBank:WP_000225095.1;Name=WP_000225095.1;Ontology_term=GO:0006355,GO:0003677,GO:0046872;gbkey=CDS;gene=mlc;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460448.1;locus_tag=C9E96_RS13795;product=sugar metabolism global transcriptional regulator Mlc;protein_id=WP_000225095.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	39557	40252	.	+	.	ID=gene-C9E96_RS13800;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=C9E96_RS13800;old_locus_tag=C9E96_14135
NZ_PYJX01000154.1	Protein Homology	CDS	39557	40252	.	+	0	ID=cds-WP_000919206.1;Parent=gene-C9E96_RS13800;Dbxref=GenBank:WP_000919206.1;Name=WP_000919206.1;Ontology_term=GO:0009102,GO:0000287,GO:0004141,GO:0005524;gbkey=CDS;gene=bioD;go_function=magnesium ion binding|0000287||IEA,dethiobiotin synthase activity|0004141||IEA,ATP binding|0005524||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460449.1;locus_tag=C9E96_RS13800;product=dethiobiotin synthase;protein_id=WP_000919206.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	40208	41497	.	-	.	ID=gene-C9E96_RS13805;Name=clcB;gbkey=Gene;gene=clcB;gene_biotype=protein_coding;locus_tag=C9E96_RS13805;old_locus_tag=C9E96_14140
NZ_PYJX01000154.1	Protein Homology	CDS	40208	41497	.	-	0	ID=cds-WP_000554918.1;Parent=gene-C9E96_RS13805;Dbxref=GenBank:WP_000554918.1;Name=WP_000554918.1;Ontology_term=GO:0006821,GO:0010447,GO:0005247,GO:0016020;gbkey=CDS;gene=clcB;go_component=membrane|0016020||IEA;go_function=voltage-gated chloride channel activity|0005247||IEA;go_process=chloride transport|0006821||IEA,response to acidic pH|0010447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460450.3;locus_tag=C9E96_RS13805;product=voltage-gated ClC-type chloride channel ClcB;protein_id=WP_000554918.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	41633	42781	.	-	.	ID=gene-C9E96_RS13810;Name=osmV;gbkey=Gene;gene=osmV;gene_biotype=protein_coding;locus_tag=C9E96_RS13810;old_locus_tag=C9E96_14145
NZ_PYJX01000154.1	Protein Homology	CDS	41633	42781	.	-	0	ID=cds-WP_000593088.1;Parent=gene-C9E96_RS13810;Dbxref=GenBank:WP_000593088.1;Name=WP_000593088.1;gbkey=CDS;gene=osmV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460451.1;locus_tag=C9E96_RS13810;product=osmoprotectant ABC transporter ATP-binding protein OsmV;protein_id=WP_000593088.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	42781	43428	.	-	.	ID=gene-C9E96_RS13815;Name=osmW;gbkey=Gene;gene=osmW;gene_biotype=protein_coding;locus_tag=C9E96_RS13815;old_locus_tag=C9E96_14150
NZ_PYJX01000154.1	Protein Homology	CDS	42781	43428	.	-	0	ID=cds-WP_000379677.1;Parent=gene-C9E96_RS13815;Dbxref=GenBank:WP_000379677.1;Name=WP_000379677.1;gbkey=CDS;gene=osmW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460452.1;locus_tag=C9E96_RS13815;product=osmoprotectant ABC transporter permease OsmW;protein_id=WP_000379677.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	43438	44340	.	-	.	ID=gene-C9E96_RS13820;Name=osmX;gbkey=Gene;gene=osmX;gene_biotype=protein_coding;locus_tag=C9E96_RS13820;old_locus_tag=C9E96_14155
NZ_PYJX01000154.1	Protein Homology	CDS	43438	44340	.	-	0	ID=cds-WP_001211193.1;Parent=gene-C9E96_RS13820;Dbxref=GenBank:WP_001211193.1;Name=WP_001211193.1;gbkey=CDS;gene=osmX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460453.1;locus_tag=C9E96_RS13820;product=osmoprotectant ABC transporter substrate-binding protein OsmX;protein_id=WP_001211193.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	44369	45079	.	-	.	ID=gene-C9E96_RS13825;Name=osmY;gbkey=Gene;gene=osmY;gene_biotype=protein_coding;locus_tag=C9E96_RS13825;old_locus_tag=C9E96_14160
NZ_PYJX01000154.1	Protein Homology	CDS	44369	45079	.	-	0	ID=cds-WP_000557304.1;Parent=gene-C9E96_RS13825;Dbxref=GenBank:WP_000557304.1;Name=WP_000557304.1;gbkey=CDS;gene=osmY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460454.1;locus_tag=C9E96_RS13825;product=osmoprotectant ABC transporter permease OsmY;protein_id=WP_000557304.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	45384	45998	.	-	.	ID=gene-C9E96_RS13830;Name=dmsD;gbkey=Gene;gene=dmsD;gene_biotype=protein_coding;locus_tag=C9E96_RS13830;old_locus_tag=C9E96_14165
NZ_PYJX01000154.1	Protein Homology	CDS	45384	45998	.	-	0	ID=cds-WP_000206571.1;Parent=gene-C9E96_RS13830;Dbxref=GenBank:WP_000206571.1;Name=WP_000206571.1;gbkey=CDS;gene=dmsD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460455.1;locus_tag=C9E96_RS13830;product=Tat proofreading chaperone DmsD;protein_id=WP_000206571.1;transl_table=11
NZ_PYJX01000154.1	RefSeq	gene	46041	46898	.	-	.	ID=gene-C9E96_RS13835;Name=C9E96_RS13835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13835;old_locus_tag=C9E96_14170
NZ_PYJX01000154.1	Protein Homology	CDS	46041	46898	.	-	0	ID=cds-WP_000534703.1;Parent=gene-C9E96_RS13835;Dbxref=GenBank:WP_000534703.1;Name=WP_000534703.1;Ontology_term=GO:0009061,GO:0019645,GO:0009389,GO:0005886,GO:0009390;gbkey=CDS;go_component=plasma membrane|0005886||IEA,dimethyl sulfoxide reductase complex|0009390||IEA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA;go_process=anaerobic respiration|0009061||IEA,anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460456.1;locus_tag=C9E96_RS13835;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_000534703.1;transl_table=11
##sequence-region NZ_PYJX01000035.1 1 268
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000035.1	RefSeq	region	1	268	.	+	.	ID=NZ_PYJX01000035.1:1..268;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000035.1	RefSeq	gene	1	268	.	+	.	ID=gene-C9E96_RS02240;Name=C9E96_RS02240;end_range=268,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS02240;old_locus_tag=C9E96_02275;partial=true;start_range=.,1
NZ_PYJX01000035.1	cmsearch	rRNA	1	268	.	+	.	ID=rna-C9E96_RS02240;Parent=gene-C9E96_RS02240;Dbxref=RFAM:RF02541;end_range=268,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS02240;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000035.1	cmsearch	exon	1	268	.	+	.	ID=exon-C9E96_RS02240-1;Parent=rna-C9E96_RS02240;Dbxref=RFAM:RF02541;end_range=268,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS02240;partial=true;product=23S ribosomal RNA;start_range=.,1
##sequence-region NZ_PYJX01000179.1 1 267
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000179.1	RefSeq	region	1	267	.	+	.	ID=NZ_PYJX01000179.1:1..267;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000179.1	RefSeq	pseudogene	1	195	.	+	.	ID=gene-C9E96_RS16895;Name=psd;end_range=195,.;gbkey=Gene;gene=psd;gene_biotype=pseudogene;locus_tag=C9E96_RS16895;old_locus_tag=C9E96_17325;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000179.1	Protein Homology	CDS	1	195	.	+	0	ID=cds-C9E96_RS16895;Parent=gene-C9E96_RS16895;Note=catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=195,.;gbkey=CDS;gene=psd;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313166.1;locus_tag=C9E96_RS16895;partial=true;product=archaetidylserine decarboxylase;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000214.1 1 46289
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000214.1	RefSeq	region	1	46289	.	+	.	ID=NZ_PYJX01000214.1:1..46289;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000214.1	RefSeq	gene	1	402	.	-	.	ID=gene-C9E96_RS21185;Name=C9E96_RS21185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21185;old_locus_tag=C9E96_21715;partial=true;start_range=.,1
NZ_PYJX01000214.1	Protein Homology	CDS	1	402	.	-	0	ID=cds-WP_280951943.1;Parent=gene-C9E96_RS21185;Dbxref=GenBank:WP_280951943.1;Name=WP_280951943.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461422.1;locus_tag=C9E96_RS21185;partial=true;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_280951943.1;start_range=.,1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	577	1611	.	-	.	ID=gene-C9E96_RS21190;Name=bamC;gbkey=Gene;gene=bamC;gene_biotype=protein_coding;locus_tag=C9E96_RS21190;old_locus_tag=C9E96_21720
NZ_PYJX01000214.1	Protein Homology	CDS	577	1611	.	-	0	ID=cds-WP_080203943.1;Parent=gene-C9E96_RS21190;Dbxref=GenBank:WP_080203943.1;Name=WP_080203943.1;gbkey=CDS;gene=bamC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461423.1;locus_tag=C9E96_RS21190;product=outer membrane protein assembly factor BamC;protein_id=WP_080203943.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	1628	2506	.	-	.	ID=gene-C9E96_RS21195;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=C9E96_RS21195;old_locus_tag=C9E96_21725
NZ_PYJX01000214.1	Protein Homology	CDS	1628	2506	.	-	0	ID=cds-WP_000494020.1;Parent=gene-C9E96_RS21195;Dbxref=GenBank:WP_000494020.1;Name=WP_000494020.1;Ontology_term=GO:0009089,GO:0008840;gbkey=CDS;gene=dapA;go_function=4-hydroxy-tetrahydrodipicolinate synthase activity|0008840||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001311023.1;locus_tag=C9E96_RS21195;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_000494020.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	2652	3224	.	+	.	ID=gene-C9E96_RS21200;Name=C9E96_RS21200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21200;old_locus_tag=C9E96_21730
NZ_PYJX01000214.1	Protein Homology	CDS	2652	3224	.	+	0	ID=cds-WP_000189061.1;Parent=gene-C9E96_RS21200;Dbxref=GenBank:WP_000189061.1;Name=WP_000189061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708318.1;locus_tag=C9E96_RS21200;product=glycine cleavage system transcriptional repressor;protein_id=WP_000189061.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	3224	3694	.	+	.	ID=gene-C9E96_RS21205;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;locus_tag=C9E96_RS21205;old_locus_tag=C9E96_21735
NZ_PYJX01000214.1	Protein Homology	CDS	3224	3694	.	+	0	ID=cds-WP_001068686.1;Parent=gene-C9E96_RS21205;Dbxref=GenBank:WP_001068686.1;Name=WP_001068686.1;Ontology_term=GO:0016209,GO:0016491;gbkey=CDS;gene=bcp;go_function=antioxidant activity|0016209||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461426.1;locus_tag=C9E96_RS21205;product=thioredoxin-dependent thiol peroxidase;protein_id=WP_001068686.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	3741	4880	.	-	.	ID=gene-C9E96_RS21210;Name=C9E96_RS21210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21210;old_locus_tag=C9E96_21740
NZ_PYJX01000214.1	Protein Homology	CDS	3741	4880	.	-	0	ID=cds-WP_000706377.1;Parent=gene-C9E96_RS21210;Dbxref=GenBank:WP_000706377.1;Name=WP_000706377.1;Ontology_term=GO:0005524,GO:0008887;gbkey=CDS;go_function=ATP binding|0005524||IEA,glycerate kinase activity|0008887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000706371.1;locus_tag=C9E96_RS21210;product=glycerate kinase;protein_id=WP_000706377.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	4886	6154	.	-	.	ID=gene-C9E96_RS21215;Name=C9E96_RS21215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21215;old_locus_tag=C9E96_21745
NZ_PYJX01000214.1	Protein Homology	CDS	4886	6154	.	-	0	ID=cds-WP_000200859.1;Parent=gene-C9E96_RS21215;Dbxref=GenBank:WP_000200859.1;Name=WP_000200859.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090684.1;locus_tag=C9E96_RS21215;product=GntP family permease;protein_id=WP_000200859.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	6222	7409	.	-	.	ID=gene-C9E96_RS21220;Name=C9E96_RS21220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21220;old_locus_tag=C9E96_21750
NZ_PYJX01000214.1	Protein Homology	CDS	6222	7409	.	-	0	ID=cds-WP_080203942.1;Parent=gene-C9E96_RS21220;Dbxref=GenBank:WP_080203942.1;Name=WP_080203942.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001667973.1;locus_tag=C9E96_RS21220;product=sugar diacid recognition domain-containing protein;protein_id=WP_080203942.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	7685	8752	.	-	.	ID=gene-C9E96_RS21225;Name=C9E96_RS21225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21225;old_locus_tag=C9E96_21755
NZ_PYJX01000214.1	Protein Homology	CDS	7685	8752	.	-	0	ID=cds-WP_000892057.1;Parent=gene-C9E96_RS21225;Dbxref=GenBank:WP_000892057.1;Name=WP_000892057.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461428.1;locus_tag=C9E96_RS21225;product=AI-2E family transporter;protein_id=WP_000892057.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	8960	10423	.	+	.	ID=gene-C9E96_RS21230;Name=bepA;gbkey=Gene;gene=bepA;gene_biotype=protein_coding;locus_tag=C9E96_RS21230;old_locus_tag=C9E96_21760
NZ_PYJX01000214.1	Protein Homology	CDS	8960	10423	.	+	0	ID=cds-WP_000489635.1;Parent=gene-C9E96_RS21230;Dbxref=GenBank:WP_000489635.1;Name=WP_000489635.1;gbkey=CDS;gene=bepA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461429.1;locus_tag=C9E96_RS21230;product=beta-barrel assembly-enhancing protease;protein_id=WP_000489635.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	10463	10822	.	+	.	ID=gene-C9E96_RS21235;Name=arsC;gbkey=Gene;gene=arsC;gene_biotype=protein_coding;locus_tag=C9E96_RS21235;old_locus_tag=C9E96_21765
NZ_PYJX01000214.1	Protein Homology	CDS	10463	10822	.	+	0	ID=cds-WP_000132648.1;Parent=gene-C9E96_RS21235;Dbxref=GenBank:WP_000132648.1;Name=WP_000132648.1;Note=This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite%2C after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell%2C providing resistance.;Ontology_term=GO:0046685,GO:0008794;gbkey=CDS;gene=arsC;go_function=arsenate reductase (glutaredoxin) activity|0008794||IEA;go_process=response to arsenic-containing substance|0046685||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461430.1;locus_tag=C9E96_RS21235;product=arsenate reductase (glutaredoxin);protein_id=WP_000132648.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	10849	11550	.	-	.	ID=gene-C9E96_RS21240;Name=C9E96_RS21240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21240;old_locus_tag=C9E96_21770
NZ_PYJX01000214.1	Protein Homology	CDS	10849	11550	.	-	0	ID=cds-WP_061835882.1;Parent=gene-C9E96_RS21240;Dbxref=GenBank:WP_061835882.1;Name=WP_061835882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416991.2;locus_tag=C9E96_RS21240;product=DnaA inactivator Hda;protein_id=WP_061835882.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	11645	12934	.	-	.	ID=gene-C9E96_RS21245;Name=uraA;gbkey=Gene;gene=uraA;gene_biotype=protein_coding;locus_tag=C9E96_RS21245;old_locus_tag=C9E96_21775
NZ_PYJX01000214.1	Protein Homology	CDS	11645	12934	.	-	0	ID=cds-WP_023138795.1;Parent=gene-C9E96_RS21245;Dbxref=GenBank:WP_023138795.1;Name=WP_023138795.1;Ontology_term=GO:0022857;gbkey=CDS;gene=uraA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004866193.1;locus_tag=C9E96_RS21245;product=uracil permease;protein_id=WP_023138795.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	13022	13648	.	-	.	ID=gene-C9E96_RS21250;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=C9E96_RS21250;old_locus_tag=C9E96_21780
NZ_PYJX01000214.1	Protein Homology	CDS	13022	13648	.	-	0	ID=cds-WP_000706208.1;Parent=gene-C9E96_RS21250;Dbxref=GenBank:WP_000706208.1;Name=WP_000706208.1;Ontology_term=GO:0009116,GO:0004845;gbkey=CDS;gene=upp;go_function=uracil phosphoribosyltransferase activity|0004845||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001295473.1;locus_tag=C9E96_RS21250;product=uracil phosphoribosyltransferase;protein_id=WP_000706208.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	14062	15099	.	+	.	ID=gene-C9E96_RS21260;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=C9E96_RS21260;old_locus_tag=C9E96_21785
NZ_PYJX01000214.1	Protein Homology	CDS	14062	15099	.	+	0	ID=cds-WP_000130475.1;Parent=gene-C9E96_RS21260;Dbxref=GenBank:WP_000130475.1;Name=WP_000130475.1;Ontology_term=GO:0006189,GO:0004641;gbkey=CDS;gene=purM;go_function=phosphoribosylformylglycinamidine cyclo-ligase activity|0004641||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001656828.1;locus_tag=C9E96_RS21260;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_000130475.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	15099	15737	.	+	.	ID=gene-C9E96_RS21265;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=C9E96_RS21265;old_locus_tag=C9E96_21790
NZ_PYJX01000214.1	Protein Homology	CDS	15099	15737	.	+	0	ID=cds-WP_001028589.1;Parent=gene-C9E96_RS21265;Dbxref=GenBank:WP_001028589.1;Name=WP_001028589.1;Ontology_term=GO:0006189,GO:0004644;gbkey=CDS;gene=purN;go_function=phosphoribosylglycinamide formyltransferase activity|0004644||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461435.1;locus_tag=C9E96_RS21265;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_001028589.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	15926	17992	.	+	.	ID=gene-C9E96_RS21270;Name=ppk1;gbkey=Gene;gene=ppk1;gene_biotype=protein_coding;locus_tag=C9E96_RS21270;old_locus_tag=C9E96_21795
NZ_PYJX01000214.1	Protein Homology	CDS	15926	17992	.	+	0	ID=cds-WP_000529555.1;Parent=gene-C9E96_RS21270;Dbxref=GenBank:WP_000529555.1;Name=WP_000529555.1;Ontology_term=GO:0006799,GO:0008976,GO:0009358;gbkey=CDS;gene=ppk1;go_component=polyphosphate kinase complex|0009358||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=polyphosphate biosynthetic process|0006799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461436.1;locus_tag=C9E96_RS21270;product=polyphosphate kinase 1;protein_id=WP_000529555.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	17997	19538	.	+	.	ID=gene-C9E96_RS21275;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=C9E96_RS21275;old_locus_tag=C9E96_21800
NZ_PYJX01000214.1	Protein Homology	CDS	17997	19538	.	+	0	ID=cds-WP_001123330.1;Parent=gene-C9E96_RS21275;Dbxref=GenBank:WP_001123330.1;Name=WP_001123330.1;Ontology_term=GO:0006798,GO:0000287,GO:0004309;gbkey=CDS;gene=ppx;go_function=magnesium ion binding|0000287||IEA,exopolyphosphatase activity|0004309||IEA;go_process=polyphosphate catabolic process|0006798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461437.1;locus_tag=C9E96_RS21275;product=exopolyphosphatase;protein_id=WP_001123330.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	19574	21787	.	-	.	ID=gene-C9E96_RS21280;Name=C9E96_RS21280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21280;old_locus_tag=C9E96_21805
NZ_PYJX01000214.1	Protein Homology	CDS	19574	21787	.	-	0	ID=cds-WP_000773648.1;Parent=gene-C9E96_RS21280;Dbxref=GenBank:WP_000773648.1;Name=WP_000773648.1;Ontology_term=GO:0007165,GO:0005525,GO:0046872,GO:0052621,GO:0071111;gbkey=CDS;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA,cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461438.1;locus_tag=C9E96_RS21280;product=bifunctional diguanylate cyclase/phosphodiesterase;protein_id=WP_000773648.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	21884	22021	.	-	.	ID=gene-C9E96_RS21285;Name=C9E96_RS21285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21285;old_locus_tag=C9E96_21810
NZ_PYJX01000214.1	Protein Homology	CDS	21884	22021	.	-	0	ID=cds-WP_061376141.1;Parent=gene-C9E96_RS21285;Dbxref=GenBank:WP_061376141.1;Name=WP_061376141.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448898.1;locus_tag=C9E96_RS21285;product=hypothetical protein;protein_id=WP_061376141.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	22200	22391	.	+	.	ID=gene-C9E96_RS21290;Name=C9E96_RS21290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21290;old_locus_tag=C9E96_21815
NZ_PYJX01000214.1	Protein Homology	CDS	22200	22391	.	+	0	ID=cds-WP_000075924.1;Parent=gene-C9E96_RS21290;Dbxref=GenBank:WP_000075924.1;Name=WP_000075924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461441.1;locus_tag=C9E96_RS21290;product=YfgG family protein;protein_id=WP_000075924.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	pseudogene	22469	22588	.	-	.	ID=gene-C9E96_RS24330;Name=C9E96_RS24330;end_range=22588,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24330;partial=true;pseudo=true
NZ_PYJX01000214.1	Protein Homology	CDS	22469	22588	.	-	0	ID=cds-C9E96_RS24330;Parent=gene-C9E96_RS24330;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=22588,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448901.1;locus_tag=C9E96_RS24330;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	22728	23189	.	+	.	ID=gene-C9E96_RS24450;Name=C9E96_RS24450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24450
NZ_PYJX01000214.1	Protein Homology	CDS	22728	23189	.	+	0	ID=cds-WP_000381628.1;Parent=gene-C9E96_RS24450;Dbxref=GenBank:WP_000381628.1;Name=WP_000381628.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_154057295.1;locus_tag=C9E96_RS24450;product=STM2901 family protein;protein_id=WP_000381628.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	23174	23503	.	+	.	ID=gene-C9E96_RS21300;Name=C9E96_RS21300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21300;old_locus_tag=C9E96_21825
NZ_PYJX01000214.1	Protein Homology	CDS	23174	23503	.	+	0	ID=cds-WP_023994424.1;Parent=gene-C9E96_RS21300;Dbxref=GenBank:WP_023994424.1;Name=WP_023994424.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461443.1;locus_tag=C9E96_RS21300;product=DUF1493 family protein;protein_id=WP_023994424.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	pseudogene	23580	23899	.	-	.	ID=gene-C9E96_RS21305;Name=C9E96_RS21305;end_range=23899,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS21305;old_locus_tag=C9E96_21830;partial=true;pseudo=true;start_range=.,23580
NZ_PYJX01000214.1	Protein Homology	CDS	23580	23899	.	-	0	ID=cds-C9E96_RS21305;Parent=gene-C9E96_RS21305;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0015074;end_range=23899,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611342.1;locus_tag=C9E96_RS21305;partial=true;product=DDE-type integrase/transposase/recombinase;pseudo=true;start_range=.,23580;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	24035	25612	.	-	.	ID=gene-C9E96_RS21310;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=C9E96_RS21310;old_locus_tag=C9E96_21835
NZ_PYJX01000214.1	Protein Homology	CDS	24035	25612	.	-	0	ID=cds-WP_000138293.1;Parent=gene-C9E96_RS21310;Dbxref=GenBank:WP_000138293.1;Name=WP_000138293.1;Ontology_term=GO:0006177,GO:0003922,GO:0005524,GO:0016462;gbkey=CDS;gene=guaA;go_function=GMP synthase (glutamine-hydrolyzing) activity|0003922||IEA,ATP binding|0005524||IEA,pyrophosphatase activity|0016462||IEA;go_process=GMP biosynthetic process|0006177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130181.1;locus_tag=C9E96_RS21310;product=glutamine-hydrolyzing GMP synthase;protein_id=WP_000138293.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	25682	27148	.	-	.	ID=gene-C9E96_RS21315;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=C9E96_RS21315;old_locus_tag=C9E96_21840
NZ_PYJX01000214.1	Protein Homology	CDS	25682	27148	.	-	0	ID=cds-WP_135494587.1;Parent=gene-C9E96_RS21315;Dbxref=GenBank:WP_135494587.1;Name=WP_135494587.1;Ontology_term=GO:0006164,GO:0003938;gbkey=CDS;gene=guaB;go_function=IMP dehydrogenase activity|0003938||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004151980.1;locus_tag=C9E96_RS21315;product=IMP dehydrogenase;protein_id=WP_135494587.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	27309	28658	.	+	.	ID=gene-C9E96_RS21320;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=C9E96_RS21320;old_locus_tag=C9E96_21845
NZ_PYJX01000214.1	Protein Homology	CDS	27309	28658	.	+	0	ID=cds-WP_135494590.1;Parent=gene-C9E96_RS21320;Dbxref=GenBank:WP_135494590.1;Name=WP_135494590.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461447.1;locus_tag=C9E96_RS21320;product=exodeoxyribonuclease VII large subunit;protein_id=WP_135494590.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	28820	34600	.	-	.	ID=gene-C9E96_RS21325;Name=shdA;gbkey=Gene;gene=shdA;gene_biotype=protein_coding;locus_tag=C9E96_RS21325;old_locus_tag=C9E96_21850
NZ_PYJX01000214.1	Protein Homology	CDS	28820	34600	.	-	0	ID=cds-WP_135494593.1;Parent=gene-C9E96_RS21325;Dbxref=GenBank:WP_135494593.1;Name=WP_135494593.1;Ontology_term=GO:0019867;gbkey=CDS;gene=shdA;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835061.1;locus_tag=C9E96_RS21325;product=fibronectin-binding autotransporter adhesin ShdA;protein_id=WP_135494593.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	pseudogene	35160	35246	.	-	.	ID=gene-C9E96_RS21330;Name=C9E96_RS21330;end_range=35246,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS21330;old_locus_tag=C9E96_21855;partial=true;pseudo=true
NZ_PYJX01000214.1	Protein Homology	CDS	35160	35246	.	-	0	ID=cds-C9E96_RS21330;Parent=gene-C9E96_RS21330;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=35246,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477181.1;locus_tag=C9E96_RS21330;partial=true;product=IS1 family transposase;pseudo=true;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	35261	42568	.	-	.	ID=gene-C9E96_RS21335;Name=ratB;gbkey=Gene;gene=ratB;gene_biotype=protein_coding;locus_tag=C9E96_RS21335;old_locus_tag=C9E96_21860
NZ_PYJX01000214.1	Protein Homology	CDS	35261	42568	.	-	0	ID=cds-WP_135494595.1;Parent=gene-C9E96_RS21335;Dbxref=GenBank:WP_135494595.1;Name=WP_135494595.1;gbkey=CDS;gene=ratB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461449.1;locus_tag=C9E96_RS21335;product=DUF823/DUF824 repeat adhesin RatB;protein_id=WP_135494595.1;transl_table=11
NZ_PYJX01000214.1	RefSeq	gene	42734	46289	.	-	.	ID=gene-C9E96_RS21340;Name=C9E96_RS21340;end_range=46289,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21340;old_locus_tag=C9E96_21865;partial=true
NZ_PYJX01000214.1	Protein Homology	CDS	42734	46289	.	-	1	ID=cds-WP_245306440.1;Parent=gene-C9E96_RS21340;Dbxref=GenBank:WP_245306440.1;Name=WP_245306440.1;end_range=46289,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461450.1;locus_tag=C9E96_RS21340;partial=true;product=adhesion domain-containing protein;protein_id=WP_245306440.1;transl_table=11
##sequence-region NZ_PYJX01000207.1 1 46186
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000207.1	RefSeq	region	1	46186	.	+	.	ID=NZ_PYJX01000207.1:1..46186;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000207.1	RefSeq	gene	1	95	.	-	.	ID=gene-C9E96_RS20640;Name=C9E96_RS20640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20640;old_locus_tag=C9E96_21160;partial=true;start_range=.,1
NZ_PYJX01000207.1	Protein Homology	CDS	1	95	.	-	0	ID=cds-WP_210114530.1;Parent=gene-C9E96_RS20640;Dbxref=GenBank:WP_210114530.1;Name=WP_210114530.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933559.1;locus_tag=C9E96_RS20640;partial=true;product=50S ribosomal protein L27;protein_id=WP_210114530.1;start_range=.,1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	115	426	.	-	.	ID=gene-C9E96_RS20645;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=C9E96_RS20645;old_locus_tag=C9E96_21165
NZ_PYJX01000207.1	Protein Homology	CDS	115	426	.	-	0	ID=cds-WP_000271396.1;Parent=gene-C9E96_RS20645;Dbxref=GenBank:WP_000271396.1;Name=WP_000271396.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rplU;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015960603.1;locus_tag=C9E96_RS20645;product=50S ribosomal protein L21;protein_id=WP_000271396.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	684	1655	.	+	.	ID=gene-C9E96_RS20650;Name=ispB;gbkey=Gene;gene=ispB;gene_biotype=protein_coding;locus_tag=C9E96_RS20650;old_locus_tag=C9E96_21170
NZ_PYJX01000207.1	Protein Homology	CDS	684	1655	.	+	0	ID=cds-WP_001047354.1;Parent=gene-C9E96_RS20650;Dbxref=GenBank:WP_001047354.1;Name=WP_001047354.1;Ontology_term=GO:0008299;gbkey=CDS;gene=ispB;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462215.1;locus_tag=C9E96_RS20650;product=octaprenyl diphosphate synthase;protein_id=WP_001047354.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	1887	2174	.	+	.	ID=gene-C9E96_RS20655;Name=sfsB;gbkey=Gene;gene=sfsB;gene_biotype=protein_coding;locus_tag=C9E96_RS20655;old_locus_tag=C9E96_21175
NZ_PYJX01000207.1	Protein Homology	CDS	1887	2174	.	+	0	ID=cds-WP_000444168.1;Parent=gene-C9E96_RS20655;Dbxref=GenBank:WP_000444168.1;Name=WP_000444168.1;gbkey=CDS;gene=sfsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462216.1;locus_tag=C9E96_RS20655;product=DNA-binding transcriptional regulator SfsB;protein_id=WP_000444168.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	2232	3491	.	-	.	ID=gene-C9E96_RS20660;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=C9E96_RS20660;old_locus_tag=C9E96_21180
NZ_PYJX01000207.1	Protein Homology	CDS	2232	3491	.	-	0	ID=cds-WP_000357288.1;Parent=gene-C9E96_RS20660;Dbxref=GenBank:WP_000357288.1;Name=WP_000357288.1;Ontology_term=GO:0019277,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=UDP-N-acetylgalactosamine biosynthetic process|0019277||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462217.1;locus_tag=C9E96_RS20660;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_000357288.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	3545	3799	.	-	.	ID=gene-C9E96_RS20665;Name=ibaG;gbkey=Gene;gene=ibaG;gene_biotype=protein_coding;locus_tag=C9E96_RS20665;old_locus_tag=C9E96_21185
NZ_PYJX01000207.1	Protein Homology	CDS	3545	3799	.	-	0	ID=cds-WP_001518349.1;Parent=gene-C9E96_RS20665;Dbxref=GenBank:WP_001518349.1;Name=WP_001518349.1;gbkey=CDS;gene=ibaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417657.2;locus_tag=C9E96_RS20665;product=BolA family iron metabolism protein IbaG;protein_id=WP_001518349.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	3987	4283	.	-	.	ID=gene-C9E96_RS20670;Name=mlaB;gbkey=Gene;gene=mlaB;gene_biotype=protein_coding;locus_tag=C9E96_RS20670;old_locus_tag=C9E96_21190
NZ_PYJX01000207.1	Protein Homology	CDS	3987	4283	.	-	0	ID=cds-WP_000188844.1;Parent=gene-C9E96_RS20670;Dbxref=GenBank:WP_000188844.1;Name=WP_000188844.1;gbkey=CDS;gene=mlaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462219.1;locus_tag=C9E96_RS20670;product=lipid asymmetry maintenance protein MlaB;protein_id=WP_000188844.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	4283	4918	.	-	.	ID=gene-C9E96_RS20675;Name=mlaC;gbkey=Gene;gene=mlaC;gene_biotype=protein_coding;locus_tag=C9E96_RS20675;old_locus_tag=C9E96_21195
NZ_PYJX01000207.1	Protein Homology	CDS	4283	4918	.	-	0	ID=cds-WP_000476475.1;Parent=gene-C9E96_RS20675;Dbxref=GenBank:WP_000476475.1;Name=WP_000476475.1;gbkey=CDS;gene=mlaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462220.1;locus_tag=C9E96_RS20675;product=phospholipid-binding protein MlaC;protein_id=WP_000476475.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	4937	5488	.	-	.	ID=gene-C9E96_RS20680;Name=mlaD;gbkey=Gene;gene=mlaD;gene_biotype=protein_coding;locus_tag=C9E96_RS20680;old_locus_tag=C9E96_21200
NZ_PYJX01000207.1	Protein Homology	CDS	4937	5488	.	-	0	ID=cds-WP_001193591.1;Parent=gene-C9E96_RS20680;Dbxref=GenBank:WP_001193591.1;Name=WP_001193591.1;Ontology_term=GO:0015914;gbkey=CDS;gene=mlaD;go_process=phospholipid transport|0015914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462221.1;locus_tag=C9E96_RS20680;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_001193591.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	5493	6275	.	-	.	ID=gene-C9E96_RS20685;Name=mlaE;gbkey=Gene;gene=mlaE;gene_biotype=protein_coding;locus_tag=C9E96_RS20685;old_locus_tag=C9E96_21205
NZ_PYJX01000207.1	Protein Homology	CDS	5493	6275	.	-	0	ID=cds-WP_000925786.1;Parent=gene-C9E96_RS20685;Dbxref=GenBank:WP_000925786.1;Name=WP_000925786.1;Ontology_term=GO:0043190;gbkey=CDS;gene=mlaE;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014071945.1;locus_tag=C9E96_RS20685;product=lipid asymmetry maintenance ABC transporter permease subunit MlaE;protein_id=WP_000925786.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	6283	7095	.	-	.	ID=gene-C9E96_RS20690;Name=mlaF;gbkey=Gene;gene=mlaF;gene_biotype=protein_coding;locus_tag=C9E96_RS20690;old_locus_tag=C9E96_21210
NZ_PYJX01000207.1	Protein Homology	CDS	6283	7095	.	-	0	ID=cds-WP_000531566.1;Parent=gene-C9E96_RS20690;Dbxref=GenBank:WP_000531566.1;Name=WP_000531566.1;Ontology_term=GO:0005524;gbkey=CDS;gene=mlaF;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462223.1;locus_tag=C9E96_RS20690;product=phospholipid ABC transporter ATP-binding protein MlaF;protein_id=WP_000531566.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	7308	8285	.	+	.	ID=gene-C9E96_RS20695;Name=C9E96_RS20695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20695;old_locus_tag=C9E96_21215
NZ_PYJX01000207.1	Protein Homology	CDS	7308	8285	.	+	0	ID=cds-WP_000922742.1;Parent=gene-C9E96_RS20695;Dbxref=GenBank:WP_000922742.1;Name=WP_000922742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462224.1;locus_tag=C9E96_RS20695;product=calcium/sodium antiporter;protein_id=WP_000922742.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	8299	9285	.	+	.	ID=gene-C9E96_RS20700;Name=kdsD;gbkey=Gene;gene=kdsD;gene_biotype=protein_coding;locus_tag=C9E96_RS20700;old_locus_tag=C9E96_21220
NZ_PYJX01000207.1	Protein Homology	CDS	8299	9285	.	+	0	ID=cds-WP_000018617.1;Parent=gene-C9E96_RS20700;Dbxref=GenBank:WP_000018617.1;Name=WP_000018617.1;Ontology_term=GO:1901135,GO:0016853,GO:0097367;gbkey=CDS;gene=kdsD;go_function=isomerase activity|0016853||IEA,carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462225.1;locus_tag=C9E96_RS20700;product=arabinose-5-phosphate isomerase KdsD;protein_id=WP_000018617.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	9306	9872	.	+	.	ID=gene-C9E96_RS20705;Name=kdsC;gbkey=Gene;gene=kdsC;gene_biotype=protein_coding;locus_tag=C9E96_RS20705;old_locus_tag=C9E96_21225
NZ_PYJX01000207.1	Protein Homology	CDS	9306	9872	.	+	0	ID=cds-WP_000030029.1;Parent=gene-C9E96_RS20705;Dbxref=GenBank:WP_000030029.1;Name=WP_000030029.1;Ontology_term=GO:0016788;gbkey=CDS;gene=kdsC;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462226.1;locus_tag=C9E96_RS20705;product=3-deoxy-manno-octulosonate-8-phosphatase KdsC;protein_id=WP_000030029.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	9869	10444	.	+	.	ID=gene-C9E96_RS20710;Name=lptC;gbkey=Gene;gene=lptC;gene_biotype=protein_coding;locus_tag=C9E96_RS20710;old_locus_tag=C9E96_21230
NZ_PYJX01000207.1	Protein Homology	CDS	9869	10444	.	+	0	ID=cds-WP_000047845.1;Parent=gene-C9E96_RS20710;Dbxref=GenBank:WP_000047845.1;Name=WP_000047845.1;gbkey=CDS;gene=lptC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462227.1;locus_tag=C9E96_RS20710;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_000047845.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	10413	10967	.	+	.	ID=gene-C9E96_RS20715;Name=lptA;gbkey=Gene;gene=lptA;gene_biotype=protein_coding;locus_tag=C9E96_RS20715;old_locus_tag=C9E96_21235
NZ_PYJX01000207.1	Protein Homology	CDS	10413	10967	.	+	0	ID=cds-WP_000669770.1;Parent=gene-C9E96_RS20715;Dbxref=GenBank:WP_000669770.1;Name=WP_000669770.1;gbkey=CDS;gene=lptA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462228.1;locus_tag=C9E96_RS20715;product=lipopolysaccharide ABC transporter substrate-binding protein LptA;protein_id=WP_000669770.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	10974	11699	.	+	.	ID=gene-C9E96_RS20720;Name=lptB;gbkey=Gene;gene=lptB;gene_biotype=protein_coding;locus_tag=C9E96_RS20720;old_locus_tag=C9E96_21240
NZ_PYJX01000207.1	Protein Homology	CDS	10974	11699	.	+	0	ID=cds-WP_000224104.1;Parent=gene-C9E96_RS20720;Dbxref=GenBank:WP_000224104.1;Name=WP_000224104.1;Ontology_term=GO:0055085,GO:0005524,GO:0043190;gbkey=CDS;gene=lptB;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003861862.1;locus_tag=C9E96_RS20720;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_000224104.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	11747	13180	.	+	.	ID=gene-C9E96_RS20725;Name=rpoN;gbkey=Gene;gene=rpoN;gene_biotype=protein_coding;locus_tag=C9E96_RS20725;old_locus_tag=C9E96_21245
NZ_PYJX01000207.1	Protein Homology	CDS	11747	13180	.	+	0	ID=cds-WP_000809020.1;Parent=gene-C9E96_RS20725;Dbxref=GenBank:WP_000809020.1;Name=WP_000809020.1;Ontology_term=GO:0006352,GO:0001216,GO:0003677,GO:0016987;gbkey=CDS;gene=rpoN;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462230.1;locus_tag=C9E96_RS20725;product=RNA polymerase factor sigma-54;protein_id=WP_000809020.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	13203	13490	.	+	.	ID=gene-C9E96_RS20730;Name=hpf;gbkey=Gene;gene=hpf;gene_biotype=protein_coding;locus_tag=C9E96_RS20730;old_locus_tag=C9E96_21250
NZ_PYJX01000207.1	Protein Homology	CDS	13203	13490	.	+	0	ID=cds-WP_001176589.1;Parent=gene-C9E96_RS20730;Dbxref=GenBank:WP_001176589.1;Name=WP_001176589.1;Ontology_term=GO:0044238;gbkey=CDS;gene=hpf;go_process=primary metabolic process|0044238||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462231.1;locus_tag=C9E96_RS20730;product=ribosome hibernation promoting factor;protein_id=WP_001176589.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	13608	14099	.	+	.	ID=gene-C9E96_RS20735;Name=ptsN;gbkey=Gene;gene=ptsN;gene_biotype=protein_coding;locus_tag=C9E96_RS20735;old_locus_tag=C9E96_21255
NZ_PYJX01000207.1	Protein Homology	CDS	13608	14099	.	+	0	ID=cds-WP_000609332.1;Parent=gene-C9E96_RS20735;Dbxref=GenBank:WP_000609332.1;Name=WP_000609332.1;gbkey=CDS;gene=ptsN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462232.1;locus_tag=C9E96_RS20735;product=PTS IIA-like nitrogen regulatory protein PtsN;protein_id=WP_000609332.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	14145	14999	.	+	.	ID=gene-C9E96_RS20740;Name=rapZ;gbkey=Gene;gene=rapZ;gene_biotype=protein_coding;locus_tag=C9E96_RS20740;old_locus_tag=C9E96_21260
NZ_PYJX01000207.1	Protein Homology	CDS	14145	14999	.	+	0	ID=cds-WP_000243749.1;Parent=gene-C9E96_RS20740;Dbxref=GenBank:WP_000243749.1;Name=WP_000243749.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rapZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462233.1;locus_tag=C9E96_RS20740;product=RNase adapter RapZ;protein_id=WP_000243749.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	14996	15268	.	+	.	ID=gene-C9E96_RS20745;Name=npr;gbkey=Gene;gene=npr;gene_biotype=protein_coding;locus_tag=C9E96_RS20745;old_locus_tag=C9E96_21265
NZ_PYJX01000207.1	Protein Homology	CDS	14996	15268	.	+	0	ID=cds-WP_000216797.1;Parent=gene-C9E96_RS20745;Dbxref=GenBank:WP_000216797.1;Name=WP_000216797.1;gbkey=CDS;gene=npr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000216792.1;locus_tag=C9E96_RS20745;product=PTS phosphocarrier protein NPr;protein_id=WP_000216797.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	15517	16149	.	+	.	ID=gene-C9E96_RS20755;Name=yrbL;gbkey=Gene;gene=yrbL;gene_biotype=protein_coding;locus_tag=C9E96_RS20755;old_locus_tag=C9E96_21275
NZ_PYJX01000207.1	Protein Homology	CDS	15517	16149	.	+	0	ID=cds-WP_080204076.1;Parent=gene-C9E96_RS20755;Dbxref=GenBank:WP_080204076.1;Name=WP_080204076.1;gbkey=CDS;gene=yrbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462235.1;locus_tag=C9E96_RS20755;product=PhoP regulatory network protein YrbL;protein_id=WP_080204076.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	16224	16952	.	-	.	ID=gene-C9E96_RS20760;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=C9E96_RS20760;old_locus_tag=C9E96_21280
NZ_PYJX01000207.1	Protein Homology	CDS	16224	16952	.	-	0	ID=cds-WP_000044645.1;Parent=gene-C9E96_RS20760;Dbxref=GenBank:WP_000044645.1;Name=WP_000044645.1;Ontology_term=GO:0009252,GO:0016763,GO:0009274,GO:0016020;gbkey=CDS;gene=mtgA;go_component=peptidoglycan-based cell wall|0009274||IEA,membrane|0016020||IEA;go_function=pentosyltransferase activity|0016763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462236.1;locus_tag=C9E96_RS20760;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=WP_000044645.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	16949	17602	.	-	.	ID=gene-C9E96_RS20765;Name=elbB;gbkey=Gene;gene=elbB;gene_biotype=protein_coding;locus_tag=C9E96_RS20765;old_locus_tag=C9E96_21285
NZ_PYJX01000207.1	Protein Homology	CDS	16949	17602	.	-	0	ID=cds-WP_080204075.1;Parent=gene-C9E96_RS20765;Dbxref=GenBank:WP_080204075.1;Name=WP_080204075.1;gbkey=CDS;gene=elbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462237.1;locus_tag=C9E96_RS20765;product=isoprenoid biosynthesis glyoxalase ElbB;protein_id=WP_080204075.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	17829	20165	.	-	.	ID=gene-C9E96_RS20770;Name=arcB;gbkey=Gene;gene=arcB;gene_biotype=protein_coding;locus_tag=C9E96_RS20770;old_locus_tag=C9E96_21290
NZ_PYJX01000207.1	Protein Homology	CDS	17829	20165	.	-	0	ID=cds-WP_135494555.1;Parent=gene-C9E96_RS20770;Dbxref=GenBank:WP_135494555.1;Name=WP_135494555.1;Ontology_term=GO:0000160,GO:0006355,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=arcB;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462238.1;locus_tag=C9E96_RS20770;product=aerobic respiration two-component sensor histidine kinase ArcB;protein_id=WP_135494555.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	20259	21188	.	-	.	ID=gene-C9E96_RS20775;Name=C9E96_RS20775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20775;old_locus_tag=C9E96_21295
NZ_PYJX01000207.1	Protein Homology	CDS	20259	21188	.	-	0	ID=cds-WP_023994011.1;Parent=gene-C9E96_RS20775;Dbxref=GenBank:WP_023994011.1;Name=WP_023994011.1;Note=This family includes YhcC from E. coli K-12%2C an uncharacterized radical SAM protein.;Ontology_term=GO:0051536,GO:1904047;gbkey=CDS;go_function=iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462239.1;locus_tag=C9E96_RS20775;product=TIGR01212 family radical SAM protein;protein_id=WP_023994011.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	21860	26320	.	+	.	ID=gene-C9E96_RS20780;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=C9E96_RS20780;old_locus_tag=C9E96_21305
NZ_PYJX01000207.1	Protein Homology	CDS	21860	26320	.	+	0	ID=cds-WP_023165834.1;Parent=gene-C9E96_RS20780;Dbxref=GenBank:WP_023165834.1;Name=WP_023165834.1;Ontology_term=GO:0006537,GO:0008152,GO:0003824,GO:0015930,GO:0016491;gbkey=CDS;gene=gltB;go_function=catalytic activity|0003824||IEA,glutamate synthase activity|0015930||IEA,oxidoreductase activity|0016491||IEA;go_process=glutamate biosynthetic process|0006537||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742510.1;locus_tag=C9E96_RS20780;product=glutamate synthase large subunit;protein_id=WP_023165834.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	26330	27748	.	+	.	ID=gene-C9E96_RS20785;Name=gltD;gbkey=Gene;gene=gltD;gene_biotype=protein_coding;locus_tag=C9E96_RS20785;old_locus_tag=C9E96_21310
NZ_PYJX01000207.1	Protein Homology	CDS	26330	27748	.	+	0	ID=cds-WP_000081637.1;Parent=gene-C9E96_RS20785;Dbxref=GenBank:WP_000081637.1;Name=WP_000081637.1;gbkey=CDS;gene=gltD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001540975.1;locus_tag=C9E96_RS20785;product=glutamate synthase subunit GltD;protein_id=WP_000081637.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	27956	29059	.	+	.	ID=gene-C9E96_RS20790;Name=C9E96_RS20790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20790;old_locus_tag=C9E96_21315
NZ_PYJX01000207.1	Protein Homology	CDS	27956	29059	.	+	0	ID=cds-WP_080204074.1;Parent=gene-C9E96_RS20790;Dbxref=GenBank:WP_080204074.1;Name=WP_080204074.1;Ontology_term=GO:0003677,GO:0004518;gbkey=CDS;go_function=DNA binding|0003677||IEA,nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462242.1;locus_tag=C9E96_RS20790;product=PDDEXK nuclease domain-containing protein;protein_id=WP_080204074.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	29175	30428	.	+	.	ID=gene-C9E96_RS20795;Name=codB;gbkey=Gene;gene=codB;gene_biotype=protein_coding;locus_tag=C9E96_RS20795;old_locus_tag=C9E96_21320
NZ_PYJX01000207.1	Protein Homology	CDS	29175	30428	.	+	0	ID=cds-WP_000076263.1;Parent=gene-C9E96_RS20795;Dbxref=GenBank:WP_000076263.1;Name=WP_000076263.1;Ontology_term=GO:0055085,GO:0015209,GO:0016020;gbkey=CDS;gene=codB;go_component=membrane|0016020||IEA;go_function=cytosine transmembrane transporter activity|0015209||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462243.1;locus_tag=C9E96_RS20795;product=cytosine permease;protein_id=WP_000076263.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	30415	31695	.	+	.	ID=gene-C9E96_RS20800;Name=C9E96_RS20800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20800;old_locus_tag=C9E96_21325
NZ_PYJX01000207.1	Protein Homology	CDS	30415	31695	.	+	0	ID=cds-WP_020899291.1;Parent=gene-C9E96_RS20800;Dbxref=GenBank:WP_020899291.1;Name=WP_020899291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462244.1;locus_tag=C9E96_RS20800;product=cytosine deaminase;protein_id=WP_020899291.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	31778	32245	.	-	.	ID=gene-C9E96_RS20805;Name=nanQ;gbkey=Gene;gene=nanQ;gene_biotype=protein_coding;locus_tag=C9E96_RS20805;old_locus_tag=C9E96_21330
NZ_PYJX01000207.1	Protein Homology	CDS	31778	32245	.	-	0	ID=cds-WP_023994009.1;Parent=gene-C9E96_RS20805;Dbxref=GenBank:WP_023994009.1;Name=WP_023994009.1;Ontology_term=GO:0006974;gbkey=CDS;gene=nanQ;go_process=DNA damage response|0006974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462245.1;locus_tag=C9E96_RS20805;product=N-acetylneuraminate anomerase;protein_id=WP_023994009.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	32242	33117	.	-	.	ID=gene-C9E96_RS20810;Name=nanK;gbkey=Gene;gene=nanK;gene_biotype=protein_coding;locus_tag=C9E96_RS20810;old_locus_tag=C9E96_21335
NZ_PYJX01000207.1	Protein Homology	CDS	32242	33117	.	-	0	ID=cds-WP_000208970.1;Parent=gene-C9E96_RS20810;Dbxref=GenBank:WP_000208970.1;Name=WP_000208970.1;Ontology_term=GO:0019262,GO:0005524,GO:0009384;gbkey=CDS;gene=nanK;go_function=ATP binding|0005524||IEA,N-acylmannosamine kinase activity|0009384||IEA;go_process=N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462246.1;locus_tag=C9E96_RS20810;product=N-acetylmannosamine kinase;protein_id=WP_000208970.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	33114	33803	.	-	.	ID=gene-C9E96_RS20815;Name=C9E96_RS20815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20815;old_locus_tag=C9E96_21340
NZ_PYJX01000207.1	Protein Homology	CDS	33114	33803	.	-	0	ID=cds-WP_000054441.1;Parent=gene-C9E96_RS20815;Dbxref=GenBank:WP_000054441.1;Name=WP_000054441.1;Ontology_term=GO:0005975,GO:0006051,GO:0019262,GO:0047465;gbkey=CDS;go_function=N-acylglucosamine-6-phosphate 2-epimerase activity|0047465||IEA;go_process=carbohydrate metabolic process|0005975||IEA,N-acetylmannosamine metabolic process|0006051||IEA,N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462247.1;locus_tag=C9E96_RS20815;product=N-acetylmannosamine-6-phosphate 2-epimerase;protein_id=WP_000054441.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	33850	35340	.	-	.	ID=gene-C9E96_RS20820;Name=nanT;gbkey=Gene;gene=nanT;gene_biotype=protein_coding;locus_tag=C9E96_RS20820;old_locus_tag=C9E96_21345
NZ_PYJX01000207.1	Protein Homology	CDS	33850	35340	.	-	0	ID=cds-WP_000108071.1;Parent=gene-C9E96_RS20820;Dbxref=GenBank:WP_000108071.1;Name=WP_000108071.1;gbkey=CDS;gene=nanT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462248.1;locus_tag=C9E96_RS20820;product=sialic acid transporter NanT;protein_id=WP_000108071.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	35456	36349	.	-	.	ID=gene-C9E96_RS20825;Name=nanA;gbkey=Gene;gene=nanA;gene_biotype=protein_coding;locus_tag=C9E96_RS20825;old_locus_tag=C9E96_21350
NZ_PYJX01000207.1	Protein Homology	CDS	35456	36349	.	-	0	ID=cds-WP_001029665.1;Parent=gene-C9E96_RS20825;Dbxref=GenBank:WP_001029665.1;Name=WP_001029665.1;Ontology_term=GO:0005975,GO:0008747;gbkey=CDS;gene=nanA;go_function=N-acetylneuraminate lyase activity|0008747||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462249.1;locus_tag=C9E96_RS20825;product=N-acetylneuraminate lyase;protein_id=WP_001029665.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	36484	37275	.	-	.	ID=gene-C9E96_RS20830;Name=nanR;gbkey=Gene;gene=nanR;gene_biotype=protein_coding;locus_tag=C9E96_RS20830;old_locus_tag=C9E96_21355
NZ_PYJX01000207.1	Protein Homology	CDS	36484	37275	.	-	0	ID=cds-WP_000382926.1;Parent=gene-C9E96_RS20830;Dbxref=GenBank:WP_000382926.1;Name=WP_000382926.1;gbkey=CDS;gene=nanR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462250.1;locus_tag=C9E96_RS20830;product=transcriptional regulator NanR;protein_id=WP_000382926.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	37384	37884	.	-	.	ID=gene-C9E96_RS20835;Name=sspB;gbkey=Gene;gene=sspB;gene_biotype=protein_coding;locus_tag=C9E96_RS20835;old_locus_tag=C9E96_21360
NZ_PYJX01000207.1	Protein Homology	CDS	37384	37884	.	-	0	ID=cds-WP_000366112.1;Parent=gene-C9E96_RS20835;Dbxref=GenBank:WP_000366112.1;Name=WP_000366112.1;gbkey=CDS;gene=sspB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462251.1;locus_tag=C9E96_RS20835;product=ClpXP protease specificity-enhancing factor;protein_id=WP_000366112.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	37890	38528	.	-	.	ID=gene-C9E96_RS20840;Name=sspA;gbkey=Gene;gene=sspA;gene_biotype=protein_coding;locus_tag=C9E96_RS20840;old_locus_tag=C9E96_21365
NZ_PYJX01000207.1	Protein Homology	CDS	37890	38528	.	-	0	ID=cds-WP_000257298.1;Parent=gene-C9E96_RS20840;Dbxref=GenBank:WP_000257298.1;Name=WP_000257298.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=sspA;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000257299.1;locus_tag=C9E96_RS20840;product=stringent starvation protein SspA;protein_id=WP_000257298.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	38791	39543	.	-	.	ID=gene-C9E96_RS20845;Name=C9E96_RS20845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20845;old_locus_tag=C9E96_21370
NZ_PYJX01000207.1	Protein Homology	CDS	38791	39543	.	-	0	ID=cds-WP_000950539.1;Parent=gene-C9E96_RS20845;Dbxref=GenBank:WP_000950539.1;Name=WP_000950539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462253.1;locus_tag=C9E96_RS20845;product=DUF695 domain-containing protein;protein_id=WP_000950539.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	39743	40135	.	-	.	ID=gene-C9E96_RS20850;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=C9E96_RS20850;old_locus_tag=C9E96_21375
NZ_PYJX01000207.1	Protein Homology	CDS	39743	40135	.	-	0	ID=cds-WP_000829815.1;Parent=gene-C9E96_RS20850;Dbxref=GenBank:WP_000829815.1;Name=WP_000829815.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000829824.1;locus_tag=C9E96_RS20850;product=30S ribosomal protein S9;protein_id=WP_000829815.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	40151	40579	.	-	.	ID=gene-C9E96_RS20855;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=C9E96_RS20855;old_locus_tag=C9E96_21380
NZ_PYJX01000207.1	Protein Homology	CDS	40151	40579	.	-	0	ID=cds-WP_000847559.1;Parent=gene-C9E96_RS20855;Dbxref=GenBank:WP_000847559.1;Name=WP_000847559.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplM;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010847760.1;locus_tag=C9E96_RS20855;product=50S ribosomal protein L13;protein_id=WP_000847559.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	40880	42004	.	-	.	ID=gene-C9E96_RS20860;Name=zapE;gbkey=Gene;gene=zapE;gene_biotype=protein_coding;locus_tag=C9E96_RS20860;old_locus_tag=C9E96_21385
NZ_PYJX01000207.1	Protein Homology	CDS	40880	42004	.	-	0	ID=cds-WP_001191223.1;Parent=gene-C9E96_RS20860;Dbxref=GenBank:WP_001191223.1;Name=WP_001191223.1;Ontology_term=GO:0051301,GO:0005524,GO:0016887;gbkey=CDS;gene=zapE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462256.1;locus_tag=C9E96_RS20860;product=cell division protein ZapE;protein_id=WP_001191223.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	42197	42595	.	+	.	ID=gene-C9E96_RS20865;Name=zapG;gbkey=Gene;gene=zapG;gene_biotype=protein_coding;locus_tag=C9E96_RS20865;old_locus_tag=C9E96_21390
NZ_PYJX01000207.1	Protein Homology	CDS	42197	42595	.	+	0	ID=cds-WP_001519074.1;Parent=gene-C9E96_RS20865;Dbxref=GenBank:WP_001519074.1;Name=WP_001519074.1;gbkey=CDS;gene=zapG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121352.1;locus_tag=C9E96_RS20865;product=Z-ring associated protein ZapG;protein_id=WP_001519074.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	42752	44119	.	+	.	ID=gene-C9E96_RS20870;Name=degQ;gbkey=Gene;gene=degQ;gene_biotype=protein_coding;locus_tag=C9E96_RS20870;old_locus_tag=C9E96_21395
NZ_PYJX01000207.1	Protein Homology	CDS	42752	44119	.	+	0	ID=cds-WP_135494557.1;Parent=gene-C9E96_RS20870;Dbxref=GenBank:WP_135494557.1;Name=WP_135494557.1;Ontology_term=GO:0006508,GO:0004252,GO:0005515;gbkey=CDS;gene=degQ;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462258.1;locus_tag=C9E96_RS20870;product=serine endoprotease DegQ;protein_id=WP_135494557.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	44212	45282	.	+	.	ID=gene-C9E96_RS20875;Name=degS;gbkey=Gene;gene=degS;gene_biotype=protein_coding;locus_tag=C9E96_RS20875;old_locus_tag=C9E96_21400
NZ_PYJX01000207.1	Protein Homology	CDS	44212	45282	.	+	0	ID=cds-WP_000497705.1;Parent=gene-C9E96_RS20875;Dbxref=GenBank:WP_000497705.1;Name=WP_000497705.1;Ontology_term=GO:0006508,GO:0004252;gbkey=CDS;gene=degS;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462259.1;locus_tag=C9E96_RS20875;product=outer membrane-stress sensor serine endopeptidase DegS;protein_id=WP_000497705.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	45316	46047	.	-	.	ID=gene-C9E96_RS20880;Name=C9E96_RS20880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20880;old_locus_tag=C9E96_21405
NZ_PYJX01000207.1	Protein Homology	CDS	45316	46047	.	-	0	ID=cds-WP_023994008.1;Parent=gene-C9E96_RS20880;Dbxref=GenBank:WP_023994008.1;Name=WP_023994008.1;Ontology_term=GO:0016310,GO:0005524,GO:0046917;gbkey=CDS;go_function=ATP binding|0005524||IEA,triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462260.1;locus_tag=C9E96_RS20880;product=triphosphoribosyl-dephospho-CoA synthase;protein_id=WP_023994008.1;transl_table=11
NZ_PYJX01000207.1	RefSeq	gene	46067	46186	.	-	.	ID=gene-C9E96_RS20885;Name=C9E96_RS20885;end_range=46186,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20885;old_locus_tag=C9E96_21410;partial=true
NZ_PYJX01000207.1	Protein Homology	CDS	46067	46186	.	-	0	ID=cds-WP_072143887.1-2;Parent=gene-C9E96_RS20885;Dbxref=GenBank:WP_072143887.1;Name=WP_072143887.1;Ontology_term=GO:0006814,GO:0016829;end_range=46186,.;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459059.1;locus_tag=C9E96_RS20885;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_072143887.1;transl_table=11
##sequence-region NZ_PYJX01000048.1 1 247
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000048.1	RefSeq	region	1	247	.	+	.	ID=NZ_PYJX01000048.1:1..247;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000048.1	RefSeq	gene	1	247	.	+	.	ID=gene-C9E96_RS04340;Name=C9E96_RS04340;end_range=247,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS04340;old_locus_tag=C9E96_04440;partial=true;start_range=.,1
NZ_PYJX01000048.1	cmsearch	rRNA	1	247	.	+	.	ID=rna-C9E96_RS04340;Parent=gene-C9E96_RS04340;Dbxref=RFAM:RF02541;end_range=247,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS04340;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000048.1	cmsearch	exon	1	247	.	+	.	ID=exon-C9E96_RS04340-1;Parent=rna-C9E96_RS04340;Dbxref=RFAM:RF02541;end_range=247,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS04340;partial=true;product=23S ribosomal RNA;start_range=.,1
##sequence-region NZ_PYJX01000173.1 1 44586
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000173.1	RefSeq	region	1	44586	.	+	.	ID=NZ_PYJX01000173.1:1..44586;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000173.1	RefSeq	gene	1	211	.	-	.	ID=gene-C9E96_RS16435;Name=ybfE;gbkey=Gene;gene=ybfE;gene_biotype=protein_coding;locus_tag=C9E96_RS16435;old_locus_tag=C9E96_16835;partial=true;start_range=.,1
NZ_PYJX01000173.1	Protein Homology	CDS	1	211	.	-	0	ID=cds-WP_135494403.1;Parent=gene-C9E96_RS16435;Dbxref=GenBank:WP_135494403.1;Name=WP_135494403.1;gbkey=CDS;gene=ybfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459680.1;locus_tag=C9E96_RS16435;partial=true;product=LexA regulated protein;protein_id=WP_135494403.1;start_range=.,1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	345	1115	.	-	.	ID=gene-C9E96_RS16440;Name=ybfF;gbkey=Gene;gene=ybfF;gene_biotype=protein_coding;locus_tag=C9E96_RS16440;old_locus_tag=C9E96_16840
NZ_PYJX01000173.1	Protein Homology	CDS	345	1115	.	-	0	ID=cds-WP_071055332.1;Parent=gene-C9E96_RS16440;Dbxref=GenBank:WP_071055332.1;Name=WP_071055332.1;gbkey=CDS;gene=ybfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459681.1;locus_tag=C9E96_RS16440;product=esterase;protein_id=WP_071055332.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	1300	1842	.	+	.	ID=gene-C9E96_RS16445;Name=seqA;gbkey=Gene;gene=seqA;gene_biotype=protein_coding;locus_tag=C9E96_RS16445;old_locus_tag=C9E96_16845
NZ_PYJX01000173.1	Protein Homology	CDS	1300	1842	.	+	0	ID=cds-WP_000848395.1;Parent=gene-C9E96_RS16445;Dbxref=GenBank:WP_000848395.1;Name=WP_000848395.1;Ontology_term=GO:0032297,GO:0003677;gbkey=CDS;gene=seqA;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated DNA replication initiation|0032297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459682.1;locus_tag=C9E96_RS16445;product=replication initiation negative regulator SeqA;protein_id=WP_000848395.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	1867	3507	.	+	.	ID=gene-C9E96_RS16450;Name=pgm;gbkey=Gene;gene=pgm;gene_biotype=protein_coding;locus_tag=C9E96_RS16450;old_locus_tag=C9E96_16850
NZ_PYJX01000173.1	Protein Homology	CDS	1867	3507	.	+	0	ID=cds-WP_135494405.1;Parent=gene-C9E96_RS16450;Dbxref=GenBank:WP_135494405.1;Name=WP_135494405.1;Ontology_term=GO:0005975,GO:0004614;gbkey=CDS;gene=pgm;go_function=phosphoglucomutase activity|0004614||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459683.1;locus_tag=C9E96_RS16450;product=phosphoglucomutase (alpha-D-glucose-1%2C6-bisphosphate-dependent);protein_id=WP_135494405.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	3622	4107	.	-	.	ID=gene-C9E96_RS16455;Name=C9E96_RS16455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16455;old_locus_tag=C9E96_16855
NZ_PYJX01000173.1	Protein Homology	CDS	3622	4107	.	-	0	ID=cds-WP_080203768.1;Parent=gene-C9E96_RS16455;Dbxref=GenBank:WP_080203768.1;Name=WP_080203768.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459684.1;locus_tag=C9E96_RS16455;product=pyridoxamine 5'-phosphate oxidase family protein;protein_id=WP_080203768.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	4172	5491	.	-	.	ID=gene-C9E96_RS16460;Name=potE;gbkey=Gene;gene=potE;gene_biotype=protein_coding;locus_tag=C9E96_RS16460;old_locus_tag=C9E96_16860
NZ_PYJX01000173.1	Protein Homology	CDS	4172	5491	.	-	0	ID=cds-WP_000042658.1;Parent=gene-C9E96_RS16460;Dbxref=GenBank:WP_000042658.1;Name=WP_000042658.1;Ontology_term=GO:0015822,GO:0015847,GO:0055085,GO:0015496,GO:0016020;gbkey=CDS;gene=potE;go_component=membrane|0016020||IEA;go_function=putrescine:ornithine antiporter activity|0015496||IEA;go_process=ornithine transport|0015822||IEA,putrescine transport|0015847||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459685.1;locus_tag=C9E96_RS16460;product=putrescine-ornithine antiporter;protein_id=WP_000042658.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	5488	7686	.	-	.	ID=gene-C9E96_RS16465;Name=speF;gbkey=Gene;gene=speF;gene_biotype=protein_coding;locus_tag=C9E96_RS16465;old_locus_tag=C9E96_16865
NZ_PYJX01000173.1	Protein Homology	CDS	5488	7686	.	-	0	ID=cds-WP_135494407.1;Parent=gene-C9E96_RS16465;Dbxref=GenBank:WP_135494407.1;Name=WP_135494407.1;Ontology_term=GO:0006520,GO:0004586;gbkey=CDS;gene=speF;go_function=ornithine decarboxylase activity|0004586||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459686.1;locus_tag=C9E96_RS16465;product=ornithine decarboxylase SpeF;protein_id=WP_135494407.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	8066	8170	.	-	.	ID=gene-C9E96_RS16470;Name=speFL;gbkey=Gene;gene=speFL;gene_biotype=protein_coding;locus_tag=C9E96_RS16470
NZ_PYJX01000173.1	Protein Homology	CDS	8066	8170	.	-	0	ID=cds-WP_015632840.1;Parent=gene-C9E96_RS16470;Dbxref=GenBank:WP_015632840.1;Name=WP_015632840.1;gbkey=CDS;gene=speFL;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051176.1;locus_tag=C9E96_RS16470;product=leader peptide SpeFL;protein_id=WP_015632840.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	8448	9125	.	-	.	ID=gene-C9E96_RS16475;Name=kdpE;gbkey=Gene;gene=kdpE;gene_biotype=protein_coding;locus_tag=C9E96_RS16475;old_locus_tag=C9E96_16870
NZ_PYJX01000173.1	Protein Homology	CDS	8448	9125	.	-	0	ID=cds-WP_135494409.1;Parent=gene-C9E96_RS16475;Dbxref=GenBank:WP_135494409.1;Name=WP_135494409.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=kdpE;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459687.1;locus_tag=C9E96_RS16475;product=two-component system response regulator KdpE;protein_id=WP_135494409.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	9122	11806	.	-	.	ID=gene-C9E96_RS16480;Name=kdpD;gbkey=Gene;gene=kdpD;gene_biotype=protein_coding;locus_tag=C9E96_RS16480;old_locus_tag=C9E96_16875
NZ_PYJX01000173.1	Protein Homology	CDS	9122	11806	.	-	0	ID=cds-WP_000997468.1;Parent=gene-C9E96_RS16480;Dbxref=GenBank:WP_000997468.1;Name=WP_000997468.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=kdpD;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459688.1;locus_tag=C9E96_RS16480;product=two-component system sensor histidine kinase KdpD;protein_id=WP_000997468.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	11803	12387	.	-	.	ID=gene-C9E96_RS16485;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=protein_coding;locus_tag=C9E96_RS16485;old_locus_tag=C9E96_16880
NZ_PYJX01000173.1	Protein Homology	CDS	11803	12387	.	-	0	ID=cds-WP_001531408.1;Parent=gene-C9E96_RS16485;Dbxref=GenBank:WP_001531408.1;Name=WP_001531408.1;Ontology_term=GO:0006813,GO:0008556,GO:0016020;gbkey=CDS;gene=kdpC;go_component=membrane|0016020||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459689.1;locus_tag=C9E96_RS16485;product=potassium-transporting ATPase subunit KdpC;protein_id=WP_001531408.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	12396	14444	.	-	.	ID=gene-C9E96_RS16490;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=C9E96_RS16490;old_locus_tag=C9E96_16885
NZ_PYJX01000173.1	Protein Homology	CDS	12396	14444	.	-	0	ID=cds-WP_079788569.1;Parent=gene-C9E96_RS16490;Dbxref=GenBank:WP_079788569.1;Name=WP_079788569.1;Ontology_term=GO:0006813,GO:0005524,GO:0008556,GO:0016020,GO:0031004;gbkey=CDS;gene=kdpB;go_component=membrane|0016020||IEA,potassium ion-transporting ATPase complex|0031004||IEA;go_function=ATP binding|0005524||IEA,P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459690.1;locus_tag=C9E96_RS16490;product=potassium-transporting ATPase subunit KdpB;protein_id=WP_079788569.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	14465	16144	.	-	.	ID=gene-C9E96_RS16495;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=protein_coding;locus_tag=C9E96_RS16495;old_locus_tag=C9E96_16890
NZ_PYJX01000173.1	Protein Homology	CDS	14465	16144	.	-	0	ID=cds-WP_000730066.1;Parent=gene-C9E96_RS16495;Dbxref=GenBank:WP_000730066.1;Name=WP_000730066.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpA;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459691.1;locus_tag=C9E96_RS16495;product=potassium-transporting ATPase subunit KdpA;protein_id=WP_000730066.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	16144	16233	.	-	.	ID=gene-C9E96_RS16500;Name=kdpF;gbkey=Gene;gene=kdpF;gene_biotype=protein_coding;locus_tag=C9E96_RS16500;old_locus_tag=C9E96_16895
NZ_PYJX01000173.1	Protein Homology	CDS	16144	16233	.	-	0	ID=cds-WP_001670793.1;Parent=gene-C9E96_RS16500;Dbxref=GenBank:WP_001670793.1;Name=WP_001670793.1;gbkey=CDS;gene=kdpF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459692.1;locus_tag=C9E96_RS16500;product=K(+)-transporting ATPase subunit F;protein_id=WP_001670793.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	16570	16776	.	+	.	ID=gene-C9E96_RS16505;Name=C9E96_RS16505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16505;old_locus_tag=C9E96_16900
NZ_PYJX01000173.1	Protein Homology	CDS	16570	16776	.	+	0	ID=cds-WP_000401435.1;Parent=gene-C9E96_RS16505;Dbxref=GenBank:WP_000401435.1;Name=WP_000401435.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459693.1;locus_tag=C9E96_RS16505;product=YbfA family protein;protein_id=WP_000401435.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	16888	18309	.	+	.	ID=gene-C9E96_RS16510;Name=phrB;gbkey=Gene;gene=phrB;gene_biotype=protein_coding;locus_tag=C9E96_RS16510;old_locus_tag=C9E96_16905
NZ_PYJX01000173.1	Protein Homology	CDS	16888	18309	.	+	0	ID=cds-WP_135494411.1;Parent=gene-C9E96_RS16510;Dbxref=GenBank:WP_135494411.1;Name=WP_135494411.1;gbkey=CDS;gene=phrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459694.1;locus_tag=C9E96_RS16510;product=deoxyribodipyrimidine photo-lyase;protein_id=WP_135494411.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	18348	19829	.	-	.	ID=gene-C9E96_RS16515;Name=C9E96_RS16515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16515;old_locus_tag=C9E96_16910
NZ_PYJX01000173.1	Protein Homology	CDS	18348	19829	.	-	0	ID=cds-WP_001041123.1;Parent=gene-C9E96_RS16515;Dbxref=GenBank:WP_001041123.1;Name=WP_001041123.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459695.1;locus_tag=C9E96_RS16515;product=MFS transporter;protein_id=WP_001041123.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	20158	20901	.	+	.	ID=gene-C9E96_RS16520;Name=ybgI;gbkey=Gene;gene=ybgI;gene_biotype=protein_coding;locus_tag=C9E96_RS16520;old_locus_tag=C9E96_16920
NZ_PYJX01000173.1	Protein Homology	CDS	20158	20901	.	+	0	ID=cds-WP_000798844.1;Parent=gene-C9E96_RS16520;Dbxref=GenBank:WP_000798844.1;Name=WP_000798844.1;gbkey=CDS;gene=ybgI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000798886.1;locus_tag=C9E96_RS16520;product=radiation resistance protein YbgI;protein_id=WP_000798844.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	20917	21573	.	+	.	ID=gene-C9E96_RS16525;Name=pxpB;gbkey=Gene;gene=pxpB;gene_biotype=protein_coding;locus_tag=C9E96_RS16525;old_locus_tag=C9E96_16925
NZ_PYJX01000173.1	Protein Homology	CDS	20917	21573	.	+	0	ID=cds-WP_001188371.1;Parent=gene-C9E96_RS16525;Dbxref=GenBank:WP_001188371.1;Name=WP_001188371.1;Ontology_term=GO:0005975,GO:0008152,GO:0017168;gbkey=CDS;gene=pxpB;go_function=5-oxoprolinase (ATP-hydrolyzing) activity|0017168||IEA;go_process=carbohydrate metabolic process|0005975||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459697.1;locus_tag=C9E96_RS16525;product=5-oxoprolinase subunit PxpB;protein_id=WP_001188371.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	21567	22499	.	+	.	ID=gene-C9E96_RS16530;Name=pxpC;gbkey=Gene;gene=pxpC;gene_biotype=protein_coding;locus_tag=C9E96_RS16530;old_locus_tag=C9E96_16930
NZ_PYJX01000173.1	Protein Homology	CDS	21567	22499	.	+	0	ID=cds-WP_080203765.1;Parent=gene-C9E96_RS16530;Dbxref=GenBank:WP_080203765.1;Name=WP_080203765.1;Ontology_term=GO:0005975,GO:0008152,GO:0017168;gbkey=CDS;gene=pxpC;go_function=5-oxoprolinase (ATP-hydrolyzing) activity|0017168||IEA;go_process=carbohydrate metabolic process|0005975||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459698.1;locus_tag=C9E96_RS16530;product=5-oxoprolinase subunit PxpC;protein_id=WP_080203765.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	22489	23223	.	+	.	ID=gene-C9E96_RS16535;Name=pxpA;gbkey=Gene;gene=pxpA;gene_biotype=protein_coding;locus_tag=C9E96_RS16535;old_locus_tag=C9E96_16935
NZ_PYJX01000173.1	Protein Homology	CDS	22489	23223	.	+	0	ID=cds-WP_001017922.1;Parent=gene-C9E96_RS16535;Dbxref=GenBank:WP_001017922.1;Name=WP_001017922.1;Ontology_term=GO:0005975,GO:0003824;gbkey=CDS;gene=pxpA;go_function=catalytic activity|0003824||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459699.1;locus_tag=C9E96_RS16535;product=5-oxoprolinase subunit PxpA;protein_id=WP_001017922.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	23345	24136	.	+	.	ID=gene-C9E96_RS16540;Name=nei;gbkey=Gene;gene=nei;gene_biotype=protein_coding;locus_tag=C9E96_RS16540;old_locus_tag=C9E96_16940
NZ_PYJX01000173.1	Protein Homology	CDS	23345	24136	.	+	0	ID=cds-WP_001113967.1;Parent=gene-C9E96_RS16540;Dbxref=GenBank:WP_001113967.1;Name=WP_001113967.1;Ontology_term=GO:0006281,GO:0000703,GO:0003677,GO:0008270,GO:0140078;gbkey=CDS;gene=nei;go_function=oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity|0000703||IEA,DNA binding|0003677||IEA,zinc ion binding|0008270||IEA,class I DNA-(apurinic or apyrimidinic site) endonuclease activity|0140078||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459713.1;locus_tag=C9E96_RS16540;product=endonuclease VIII;protein_id=WP_001113967.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	24191	25237	.	-	.	ID=gene-C9E96_RS16545;Name=C9E96_RS16545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16545;old_locus_tag=C9E96_16945
NZ_PYJX01000173.1	Protein Homology	CDS	24191	25237	.	-	0	ID=cds-WP_080203764.1;Parent=gene-C9E96_RS16545;Dbxref=GenBank:WP_080203764.1;Name=WP_080203764.1;Ontology_term=GO:0010468,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=regulation of gene expression|0010468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459714.1;locus_tag=C9E96_RS16545;product=AbrB family transcriptional regulator;protein_id=WP_080203764.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	25373	26656	.	-	.	ID=gene-C9E96_RS16550;Name=C9E96_RS16550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16550;old_locus_tag=C9E96_16950
NZ_PYJX01000173.1	Protein Homology	CDS	25373	26656	.	-	0	ID=cds-WP_000785808.1;Parent=gene-C9E96_RS16550;Dbxref=GenBank:WP_000785808.1;Name=WP_000785808.1;Ontology_term=GO:0046912;gbkey=CDS;go_function=acyltransferase activity%2C acyl groups converted into alkyl on transfer|0046912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459715.1;locus_tag=C9E96_RS16550;product=citrate synthase;protein_id=WP_000785808.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	26882	27013	.	-	.	ID=gene-C9E96_RS24550;Name=C9E96_RS24550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24550
NZ_PYJX01000173.1	Protein Homology	CDS	26882	27013	.	-	0	ID=cds-WP_418142699.1;Parent=gene-C9E96_RS24550;Dbxref=GenBank:WP_418142699.1;Name=WP_418142699.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049035.1;locus_tag=C9E96_RS24550;product=hypothetical protein;protein_id=WP_418142699.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	27396	27800	.	+	.	ID=gene-C9E96_RS16555;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;gene_synonym=cybA,dhsC;locus_tag=C9E96_RS16555;old_locus_tag=C9E96_16965
NZ_PYJX01000173.1	Protein Homology	CDS	27396	27800	.	+	0	ID=cds-WP_000263340.1;Parent=gene-C9E96_RS16555;Dbxref=GenBank:WP_000263340.1;Name=WP_000263340.1;Ontology_term=GO:0006099,GO:0000104,GO:0009055,GO:0016020,GO:0045273;gbkey=CDS;gene=sdhC;go_component=membrane|0016020||IEA,respiratory chain complex II (succinate dehydrogenase)|0045273||IEA;go_function=succinate dehydrogenase activity|0000104||IEA,electron transfer activity|0009055||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000263334.1;locus_tag=C9E96_RS16555;product=succinate dehydrogenase cytochrome b556 subunit;protein_id=WP_000263340.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	27794	28141	.	+	.	ID=gene-C9E96_RS16560;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;gene_synonym=cybS,dhsD;locus_tag=C9E96_RS16560;old_locus_tag=C9E96_16970
NZ_PYJX01000173.1	Protein Homology	CDS	27794	28141	.	+	0	ID=cds-WP_000254356.1;Parent=gene-C9E96_RS16560;Dbxref=GenBank:WP_000254356.1;Name=WP_000254356.1;gbkey=CDS;gene=sdhD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017455938.1;locus_tag=C9E96_RS16560;product=succinate dehydrogenase membrane anchor subunit;protein_id=WP_000254356.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	28141	29907	.	+	.	ID=gene-C9E96_RS16565;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=C9E96_RS16565;old_locus_tag=C9E96_16975
NZ_PYJX01000173.1	Protein Homology	CDS	28141	29907	.	+	0	ID=cds-WP_135494413.1;Parent=gene-C9E96_RS16565;Dbxref=GenBank:WP_135494413.1;Name=WP_135494413.1;Ontology_term=GO:0006099,GO:0016627,GO:0050660;gbkey=CDS;gene=sdhA;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122549.1;locus_tag=C9E96_RS16565;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_135494413.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	29924	30640	.	+	.	ID=gene-C9E96_RS16570;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=C9E96_RS16570;old_locus_tag=C9E96_16980
NZ_PYJX01000173.1	Protein Homology	CDS	29924	30640	.	+	0	ID=cds-WP_001537859.1;Parent=gene-C9E96_RS16570;Dbxref=GenBank:WP_001537859.1;Name=WP_001537859.1;gbkey=CDS;gene=sdhB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133276.1;locus_tag=C9E96_RS16570;product=succinate dehydrogenase iron-sulfur subunit SdhB;protein_id=WP_001537859.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	31166	33967	.	+	.	ID=gene-C9E96_RS16575;Name=sucA;gbkey=Gene;gene=sucA;gene_biotype=protein_coding;locus_tag=C9E96_RS16575;old_locus_tag=C9E96_16985
NZ_PYJX01000173.1	Protein Homology	CDS	31166	33967	.	+	0	ID=cds-WP_001181500.1;Parent=gene-C9E96_RS16575;Dbxref=GenBank:WP_001181500.1;Name=WP_001181500.1;Ontology_term=GO:0006099,GO:0004591,GO:0030976,GO:0045252;gbkey=CDS;gene=sucA;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=oxoglutarate dehydrogenase (succinyl-transferring) activity|0004591||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459721.1;locus_tag=C9E96_RS16575;product=2-oxoglutarate dehydrogenase E1 component;protein_id=WP_001181500.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	33982	35190	.	+	.	ID=gene-C9E96_RS16580;Name=odhB;gbkey=Gene;gene=odhB;gene_biotype=protein_coding;locus_tag=C9E96_RS16580;old_locus_tag=C9E96_16990
NZ_PYJX01000173.1	Protein Homology	CDS	33982	35190	.	+	0	ID=cds-WP_000099858.1;Parent=gene-C9E96_RS16580;Dbxref=GenBank:WP_000099858.1;Name=WP_000099858.1;Ontology_term=GO:0006099,GO:0004149,GO:0045252;gbkey=CDS;gene=odhB;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=dihydrolipoyllysine-residue succinyltransferase activity|0004149||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459722.1;locus_tag=C9E96_RS16580;product=2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase;protein_id=WP_000099858.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	35332	36498	.	+	.	ID=gene-C9E96_RS16585;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=C9E96_RS16585;old_locus_tag=C9E96_16995
NZ_PYJX01000173.1	Protein Homology	CDS	35332	36498	.	+	0	ID=cds-WP_080203763.1;Parent=gene-C9E96_RS16585;Dbxref=GenBank:WP_080203763.1;Name=WP_080203763.1;Ontology_term=GO:0006099,GO:0003824,GO:0005524,GO:0046872;gbkey=CDS;gene=sucC;go_function=catalytic activity|0003824||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133271.1;locus_tag=C9E96_RS16585;product=ADP-forming succinate--CoA ligase subunit beta;protein_id=WP_080203763.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	36498	37367	.	+	.	ID=gene-C9E96_RS16590;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=C9E96_RS16590;old_locus_tag=C9E96_17000
NZ_PYJX01000173.1	Protein Homology	CDS	36498	37367	.	+	0	ID=cds-WP_000114631.1;Parent=gene-C9E96_RS16590;Dbxref=GenBank:WP_000114631.1;Name=WP_000114631.1;Ontology_term=GO:0003824;gbkey=CDS;gene=sucD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459724.1;locus_tag=C9E96_RS16590;product=succinate--CoA ligase subunit alpha;protein_id=WP_000114631.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	38950	40518	.	+	.	ID=gene-C9E96_RS16595;Name=cydA;gbkey=Gene;gene=cydA;gene_biotype=protein_coding;locus_tag=C9E96_RS16595;old_locus_tag=C9E96_17010
NZ_PYJX01000173.1	Protein Homology	CDS	38950	40518	.	+	0	ID=cds-WP_000884369.1;Parent=gene-C9E96_RS16595;Dbxref=GenBank:WP_000884369.1;Name=WP_000884369.1;Ontology_term=GO:0019646,GO:0009055,GO:0070069;gbkey=CDS;gene=cydA;go_component=cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA;go_process=aerobic electron transport chain|0019646||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459725.1;locus_tag=C9E96_RS16595;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_000884369.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	40534	41673	.	+	.	ID=gene-C9E96_RS16600;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=C9E96_RS16600;old_locus_tag=C9E96_17015
NZ_PYJX01000173.1	Protein Homology	CDS	40534	41673	.	+	0	ID=cds-WP_000568258.1;Parent=gene-C9E96_RS16600;Dbxref=GenBank:WP_000568258.1;Name=WP_000568258.1;Ontology_term=GO:0016020;gbkey=CDS;gene=cydB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000568269.1;locus_tag=C9E96_RS16600;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_000568258.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	41688	41801	.	+	.	ID=gene-C9E96_RS16605;Name=cydX;gbkey=Gene;gene=cydX;gene_biotype=protein_coding;locus_tag=C9E96_RS16605;old_locus_tag=C9E96_17020
NZ_PYJX01000173.1	Protein Homology	CDS	41688	41801	.	+	0	ID=cds-WP_000270278.1;Parent=gene-C9E96_RS16605;Dbxref=GenBank:WP_000270278.1;Name=WP_000270278.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydX;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459727.1;locus_tag=C9E96_RS16605;product=cytochrome bd-I oxidase subunit CydX;protein_id=WP_000270278.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	41938	42219	.	+	.	ID=gene-C9E96_RS16610;Name=ybgE;gbkey=Gene;gene=ybgE;gene_biotype=protein_coding;locus_tag=C9E96_RS16610;old_locus_tag=C9E96_17030
NZ_PYJX01000173.1	Protein Homology	CDS	41938	42219	.	+	0	ID=cds-WP_000875305.1;Parent=gene-C9E96_RS16610;Dbxref=GenBank:WP_000875305.1;Name=WP_000875305.1;gbkey=CDS;gene=ybgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459728.1;locus_tag=C9E96_RS16610;product=cyd operon protein YbgE;protein_id=WP_000875305.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	42448	42852	.	+	.	ID=gene-C9E96_RS16615;Name=ybgC;gbkey=Gene;gene=ybgC;gene_biotype=protein_coding;locus_tag=C9E96_RS16615;old_locus_tag=C9E96_17035
NZ_PYJX01000173.1	Protein Homology	CDS	42448	42852	.	+	0	ID=cds-WP_001046240.1;Parent=gene-C9E96_RS16615;Dbxref=GenBank:WP_001046240.1;Name=WP_001046240.1;gbkey=CDS;gene=ybgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459729.1;locus_tag=C9E96_RS16615;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_001046240.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	42849	43541	.	+	.	ID=gene-C9E96_RS16620;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=C9E96_RS16620;old_locus_tag=C9E96_17040
NZ_PYJX01000173.1	Protein Homology	CDS	42849	43541	.	+	0	ID=cds-WP_000131318.1;Parent=gene-C9E96_RS16620;Dbxref=GenBank:WP_000131318.1;Name=WP_000131318.1;gbkey=CDS;gene=tolQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459730.1;locus_tag=C9E96_RS16620;product=Tol-Pal system protein TolQ;protein_id=WP_000131318.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	43545	43973	.	+	.	ID=gene-C9E96_RS16625;Name=tolR;gbkey=Gene;gene=tolR;gene_biotype=protein_coding;locus_tag=C9E96_RS16625;old_locus_tag=C9E96_17045
NZ_PYJX01000173.1	Protein Homology	CDS	43545	43973	.	+	0	ID=cds-WP_000124676.1;Parent=gene-C9E96_RS16625;Dbxref=GenBank:WP_000124676.1;Name=WP_000124676.1;gbkey=CDS;gene=tolR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965300.1;locus_tag=C9E96_RS16625;product=colicin uptake protein TolR;protein_id=WP_000124676.1;transl_table=11
NZ_PYJX01000173.1	RefSeq	gene	44038	44586	.	+	.	ID=gene-C9E96_RS16630;Name=tolA;end_range=44586,.;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=C9E96_RS16630;old_locus_tag=C9E96_17050;partial=true
NZ_PYJX01000173.1	Protein Homology	CDS	44038	44586	.	+	0	ID=cds-WP_135494415.1;Parent=gene-C9E96_RS16630;Dbxref=GenBank:WP_135494415.1;Name=WP_135494415.1;Ontology_term=GO:0043213,GO:0019534,GO:0016020;end_range=44586,.;gbkey=CDS;gene=tolA;go_component=membrane|0016020||IEA;go_function=toxin transmembrane transporter activity|0019534||IEA;go_process=bacteriocin transport|0043213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459732.1;locus_tag=C9E96_RS16630;partial=true;product=cell envelope integrity protein TolA;protein_id=WP_135494415.1;transl_table=11
##sequence-region NZ_PYJX01000249.1 1 243
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000249.1	RefSeq	region	1	243	.	+	.	ID=NZ_PYJX01000249.1:1..243;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
##sequence-region NZ_PYJX01000169.1 1 240
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000169.1	RefSeq	region	1	240	.	+	.	ID=NZ_PYJX01000169.1:1..240;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000169.1	RefSeq	pseudogene	1	240	.	+	.	ID=gene-C9E96_RS15965;Name=C9E96_RS15965;end_range=240,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS15965;old_locus_tag=C9E96_16360;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000169.1	Protein Homology	CDS	1	240	.	+	0	ID=cds-C9E96_RS15965;Parent=gene-C9E96_RS15965;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=240,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460024.1;locus_tag=C9E96_RS15965;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYJX01000204.1 1 43952
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000204.1	RefSeq	region	1	43952	.	+	.	ID=NZ_PYJX01000204.1:1..43952;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000204.1	RefSeq	gene	1	2116	.	-	.	ID=gene-C9E96_RS20240;Name=pat;gbkey=Gene;gene=pat;gene_biotype=protein_coding;locus_tag=C9E96_RS20240;old_locus_tag=C9E96_20760;partial=true;start_range=.,1
NZ_PYJX01000204.1	Protein Homology	CDS	1	2116	.	-	0	ID=cds-WP_135494537.1;Parent=gene-C9E96_RS20240;Dbxref=GenBank:WP_135494537.1;Name=WP_135494537.1;gbkey=CDS;gene=pat;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461586.1;locus_tag=C9E96_RS20240;partial=true;product=protein lysine acetyltransferase;protein_id=WP_135494537.1;start_range=.,1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	2170	2850	.	-	.	ID=gene-C9E96_RS20245;Name=tapT;gbkey=Gene;gene=tapT;gene_biotype=protein_coding;gene_synonym=tuaA,yfiP;locus_tag=C9E96_RS20245;old_locus_tag=C9E96_20765
NZ_PYJX01000204.1	Protein Homology	CDS	2170	2850	.	-	0	ID=cds-WP_000183642.1;Parent=gene-C9E96_RS20245;Dbxref=GenBank:WP_000183642.1;Name=WP_000183642.1;gbkey=CDS;gene=tapT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461585.1;locus_tag=C9E96_RS20245;product=tRNA-uridine aminocarboxypropyltransferase;protein_id=WP_000183642.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	2923	3342	.	-	.	ID=gene-C9E96_RS20250;Name=trxC;gbkey=Gene;gene=trxC;gene_biotype=protein_coding;locus_tag=C9E96_RS20250;old_locus_tag=C9E96_20770
NZ_PYJX01000204.1	Protein Homology	CDS	2923	3342	.	-	0	ID=cds-WP_001098732.1;Parent=gene-C9E96_RS20250;Dbxref=GenBank:WP_001098732.1;Name=WP_001098732.1;Ontology_term=GO:0006662,GO:0015035;gbkey=CDS;gene=trxC;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=glycerol ether metabolic process|0006662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461584.1;locus_tag=C9E96_RS20250;product=thioredoxin TrxC;protein_id=WP_001098732.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	3546	4583	.	+	.	ID=gene-C9E96_RS20255;Name=C9E96_RS20255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20255;old_locus_tag=C9E96_20775
NZ_PYJX01000204.1	Protein Homology	CDS	3546	4583	.	+	0	ID=cds-WP_000997368.1;Parent=gene-C9E96_RS20255;Dbxref=GenBank:WP_000997368.1;Name=WP_000997368.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461583.1;locus_tag=C9E96_RS20255;product=tRNA/rRNA methyltransferase;protein_id=WP_000997368.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	4699	5388	.	-	.	ID=gene-C9E96_RS20260;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=C9E96_RS20260;old_locus_tag=C9E96_20780
NZ_PYJX01000204.1	Protein Homology	CDS	4699	5388	.	-	0	ID=cds-WP_000179978.1;Parent=gene-C9E96_RS20260;Dbxref=GenBank:WP_000179978.1;Name=WP_000179978.1;Ontology_term=GO:0006284,GO:0004844,GO:0016799;gbkey=CDS;gene=ung;go_function=uracil DNA N-glycosylase activity|0004844||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461582.1;locus_tag=C9E96_RS20260;product=uracil-DNA glycosylase;protein_id=WP_000179978.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	5707	6090	.	+	.	ID=gene-C9E96_RS20265;Name=grcA;gbkey=Gene;gene=grcA;gene_biotype=protein_coding;locus_tag=C9E96_RS20265;old_locus_tag=C9E96_20785
NZ_PYJX01000204.1	Protein Homology	CDS	5707	6090	.	+	0	ID=cds-WP_000627811.1;Parent=gene-C9E96_RS20265;Dbxref=GenBank:WP_000627811.1;Name=WP_000627811.1;Ontology_term=GO:0003824;gbkey=CDS;gene=grcA;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007728348.1;locus_tag=C9E96_RS20265;product=autonomous glycyl radical cofactor GrcA;protein_id=WP_000627811.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	6152	6739	.	-	.	ID=gene-C9E96_RS20270;Name=eamB;gbkey=Gene;gene=eamB;gene_biotype=protein_coding;locus_tag=C9E96_RS20270;old_locus_tag=C9E96_20790
NZ_PYJX01000204.1	Protein Homology	CDS	6152	6739	.	-	0	ID=cds-WP_000188415.1;Parent=gene-C9E96_RS20270;Dbxref=GenBank:WP_000188415.1;Name=WP_000188415.1;gbkey=CDS;gene=eamB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461580.1;locus_tag=C9E96_RS20270;product=cysteine/O-acetylserine transporter;protein_id=WP_000188415.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	6842	7741	.	+	.	ID=gene-C9E96_RS20275;Name=C9E96_RS20275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20275;old_locus_tag=C9E96_20795
NZ_PYJX01000204.1	Protein Homology	CDS	6842	7741	.	+	0	ID=cds-WP_001670786.1;Parent=gene-C9E96_RS20275;Dbxref=GenBank:WP_001670786.1;Name=WP_001670786.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461579.1;locus_tag=C9E96_RS20275;product=LysR family transcriptional regulator;protein_id=WP_001670786.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	7759	9093	.	-	.	ID=gene-C9E96_RS20280;Name=srmB;gbkey=Gene;gene=srmB;gene_biotype=protein_coding;locus_tag=C9E96_RS20280;old_locus_tag=C9E96_20800
NZ_PYJX01000204.1	Protein Homology	CDS	7759	9093	.	-	0	ID=cds-WP_135494539.1;Parent=gene-C9E96_RS20280;Dbxref=GenBank:WP_135494539.1;Name=WP_135494539.1;Ontology_term=GO:0000027,GO:0003724;gbkey=CDS;gene=srmB;go_function=RNA helicase activity|0003724||IEA;go_process=ribosomal large subunit assembly|0000027||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461578.1;locus_tag=C9E96_RS20280;product=ATP-dependent RNA helicase SrmB;protein_id=WP_135494539.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	9224	9961	.	+	.	ID=gene-C9E96_RS20285;Name=trmN;gbkey=Gene;gene=trmN;gene_biotype=protein_coding;locus_tag=C9E96_RS20285;old_locus_tag=C9E96_20805
NZ_PYJX01000204.1	Protein Homology	CDS	9224	9961	.	+	0	ID=cds-WP_023993582.1;Parent=gene-C9E96_RS20285;Dbxref=GenBank:WP_023993582.1;Name=WP_023993582.1;Ontology_term=GO:0030488,GO:0003676,GO:0016430;gbkey=CDS;gene=trmN;go_function=nucleic acid binding|0003676||IEA,tRNA (adenine-N6)-methyltransferase activity|0016430||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461577.1;locus_tag=C9E96_RS20285;product=tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN;protein_id=WP_023993582.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	9946	11568	.	-	.	ID=gene-C9E96_RS20290;Name=nadB;gbkey=Gene;gene=nadB;gene_biotype=protein_coding;locus_tag=C9E96_RS20290;old_locus_tag=C9E96_20810
NZ_PYJX01000204.1	Protein Homology	CDS	9946	11568	.	-	0	ID=cds-WP_023993583.1;Parent=gene-C9E96_RS20290;Dbxref=GenBank:WP_023993583.1;Name=WP_023993583.1;Ontology_term=GO:0009435,GO:0008734;gbkey=CDS;gene=nadB;go_function=L-aspartate oxidase activity|0008734||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461576.1;locus_tag=C9E96_RS20290;product=L-aspartate oxidase;protein_id=WP_023993583.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	11832	11996	.	+	.	ID=gene-C9E96_RS20300;Name=rseD;gbkey=Gene;gene=rseD;gene_biotype=protein_coding;locus_tag=C9E96_RS20300
NZ_PYJX01000204.1	Protein Homology	CDS	11832	11996	.	+	0	ID=cds-WP_014344135.1;Parent=gene-C9E96_RS20300;Dbxref=GenBank:WP_014344135.1;Name=WP_014344135.1;gbkey=CDS;gene=rseD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014344135.1;locus_tag=C9E96_RS20300;product=rpoE leader peptide RseD;protein_id=WP_014344135.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	11993	12568	.	+	.	ID=gene-C9E96_RS20305;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=C9E96_RS20305;old_locus_tag=C9E96_20820
NZ_PYJX01000204.1	Protein Homology	CDS	11993	12568	.	+	0	ID=cds-WP_000003307.1;Parent=gene-C9E96_RS20305;Dbxref=GenBank:WP_000003307.1;Name=WP_000003307.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoE;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005070454.1;locus_tag=C9E96_RS20305;product=RNA polymerase sigma factor RpoE;protein_id=WP_000003307.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	pseudogene	12600	13250	.	+	.	ID=gene-C9E96_RS20310;Name=rseA;gbkey=Gene;gene=rseA;gene_biotype=pseudogene;locus_tag=C9E96_RS20310;old_locus_tag=C9E96_20825;pseudo=true
NZ_PYJX01000204.1	Protein Homology	CDS	12600	13250	.	+	0	ID=cds-C9E96_RS20310;Parent=gene-C9E96_RS20310;Note=internal stop;Ontology_term=GO:0016989;gbkey=CDS;gene=rseA;go_function=sigma factor antagonist activity|0016989||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461574.1;locus_tag=C9E96_RS20310;product=anti-sigma-E factor RseA;pseudo=true;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	13250	14206	.	+	.	ID=gene-C9E96_RS20315;Name=rseB;gbkey=Gene;gene=rseB;gene_biotype=protein_coding;locus_tag=C9E96_RS20315;old_locus_tag=C9E96_20830
NZ_PYJX01000204.1	Protein Homology	CDS	13250	14206	.	+	0	ID=cds-WP_000812017.1;Parent=gene-C9E96_RS20315;Dbxref=GenBank:WP_000812017.1;Name=WP_000812017.1;gbkey=CDS;gene=rseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461573.1;locus_tag=C9E96_RS20315;product=sigma-E factor regulatory protein RseB;protein_id=WP_000812017.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	14203	14682	.	+	.	ID=gene-C9E96_RS20320;Name=rseC;gbkey=Gene;gene=rseC;gene_biotype=protein_coding;locus_tag=C9E96_RS20320;old_locus_tag=C9E96_20835
NZ_PYJX01000204.1	Protein Homology	CDS	14203	14682	.	+	0	ID=cds-WP_000589087.1;Parent=gene-C9E96_RS20320;Dbxref=GenBank:WP_000589087.1;Name=WP_000589087.1;gbkey=CDS;gene=rseC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461572.1;locus_tag=C9E96_RS20320;product=SoxR-reducing system protein RseC;protein_id=WP_000589087.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	14934	16733	.	+	.	ID=gene-C9E96_RS20330;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=C9E96_RS20330;old_locus_tag=C9E96_20845
NZ_PYJX01000204.1	Protein Homology	CDS	14934	16733	.	+	0	ID=cds-WP_000790154.1;Parent=gene-C9E96_RS20330;Dbxref=GenBank:WP_000790154.1;Name=WP_000790154.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461518.1;locus_tag=C9E96_RS20330;product=translation elongation factor 4;protein_id=WP_000790154.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	16750	17724	.	+	.	ID=gene-C9E96_RS20335;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=C9E96_RS20335;old_locus_tag=C9E96_20850
NZ_PYJX01000204.1	Protein Homology	CDS	16750	17724	.	+	0	ID=cds-WP_000002559.1;Parent=gene-C9E96_RS20335;Dbxref=GenBank:WP_000002559.1;Name=WP_000002559.1;Ontology_term=GO:0006465,GO:0004252;gbkey=CDS;gene=lepB;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461517.1;locus_tag=C9E96_RS20335;product=signal peptidase I;protein_id=WP_000002559.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	17998	18678	.	+	.	ID=gene-C9E96_RS20340;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=C9E96_RS20340;old_locus_tag=C9E96_20860
NZ_PYJX01000204.1	Protein Homology	CDS	17998	18678	.	+	0	ID=cds-WP_001068341.1;Parent=gene-C9E96_RS20340;Dbxref=GenBank:WP_001068341.1;Name=WP_001068341.1;Ontology_term=GO:0006364,GO:0006396,GO:0003723,GO:0004525;gbkey=CDS;gene=rnc;go_function=RNA binding|0003723||IEA,ribonuclease III activity|0004525||IEA;go_process=rRNA processing|0006364||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015960048.1;locus_tag=C9E96_RS20340;product=ribonuclease III;protein_id=WP_001068341.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	18675	19580	.	+	.	ID=gene-C9E96_RS20345;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=C9E96_RS20345;old_locus_tag=C9E96_20865
NZ_PYJX01000204.1	Protein Homology	CDS	18675	19580	.	+	0	ID=cds-WP_000102230.1;Parent=gene-C9E96_RS20345;Dbxref=GenBank:WP_000102230.1;Name=WP_000102230.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461515.1;locus_tag=C9E96_RS20345;product=GTPase Era;protein_id=WP_000102230.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	19592	20320	.	+	.	ID=gene-C9E96_RS20350;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=C9E96_RS20350;old_locus_tag=C9E96_20870
NZ_PYJX01000204.1	Protein Homology	CDS	19592	20320	.	+	0	ID=cds-WP_000399380.1;Parent=gene-C9E96_RS20350;Dbxref=GenBank:WP_000399380.1;Name=WP_000399380.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461514.1;locus_tag=C9E96_RS20350;product=DNA repair protein RecO;protein_id=WP_000399380.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	20332	21063	.	+	.	ID=gene-C9E96_RS20355;Name=pdxJ;gbkey=Gene;gene=pdxJ;gene_biotype=protein_coding;locus_tag=C9E96_RS20355;old_locus_tag=C9E96_20875
NZ_PYJX01000204.1	Protein Homology	CDS	20332	21063	.	+	0	ID=cds-WP_000818964.1;Parent=gene-C9E96_RS20355;Dbxref=GenBank:WP_000818964.1;Name=WP_000818964.1;Ontology_term=GO:0008615,GO:0033856;gbkey=CDS;gene=pdxJ;go_function=pyridoxine 5'-phosphate synthase activity|0033856||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461513.1;locus_tag=C9E96_RS20355;product=pyridoxine 5'-phosphate synthase;protein_id=WP_000818964.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	21063	21443	.	+	.	ID=gene-C9E96_RS20360;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=C9E96_RS20360;old_locus_tag=C9E96_20880
NZ_PYJX01000204.1	Protein Homology	CDS	21063	21443	.	+	0	ID=cds-WP_000986043.1;Parent=gene-C9E96_RS20360;Dbxref=GenBank:WP_000986043.1;Name=WP_000986043.1;Ontology_term=GO:0008610,GO:0008897;gbkey=CDS;gene=acpS;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461512.1;locus_tag=C9E96_RS20360;product=holo-ACP synthase;protein_id=WP_000986043.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	21555	21815	.	-	.	ID=gene-C9E96_RS20365;Name=C9E96_RS20365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20365;old_locus_tag=C9E96_20885
NZ_PYJX01000204.1	Protein Homology	CDS	21555	21815	.	-	0	ID=cds-WP_001196291.1;Parent=gene-C9E96_RS20365;Dbxref=GenBank:WP_001196291.1;Name=WP_001196291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461511.1;locus_tag=C9E96_RS20365;product=YfhL family 4Fe-4S dicluster ferredoxin;protein_id=WP_001196291.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	21868	22779	.	-	.	ID=gene-C9E96_RS20370;Name=C9E96_RS20370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20370;old_locus_tag=C9E96_20890
NZ_PYJX01000204.1	Protein Homology	CDS	21868	22779	.	-	0	ID=cds-WP_001581956.1;Parent=gene-C9E96_RS20370;Dbxref=GenBank:WP_001581956.1;Name=WP_001581956.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001581956.1;locus_tag=C9E96_RS20370;product=LysR family transcriptional regulator;protein_id=WP_001581956.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	22895	24091	.	+	.	ID=gene-C9E96_RS20375;Name=C9E96_RS20375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20375;old_locus_tag=C9E96_20895
NZ_PYJX01000204.1	Protein Homology	CDS	22895	24091	.	+	0	ID=cds-WP_080203863.1;Parent=gene-C9E96_RS20375;Dbxref=GenBank:WP_080203863.1;Name=WP_080203863.1;Ontology_term=GO:0015129;gbkey=CDS;go_function=lactate transmembrane transporter activity|0015129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461509.1;locus_tag=C9E96_RS20375;product=L-lactate MFS transporter;protein_id=WP_080203863.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	24113	25030	.	+	.	ID=gene-C9E96_RS20380;Name=C9E96_RS20380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20380;old_locus_tag=C9E96_20900
NZ_PYJX01000204.1	Protein Homology	CDS	24113	25030	.	+	0	ID=cds-WP_000684023.1;Parent=gene-C9E96_RS20380;Dbxref=GenBank:WP_000684023.1;Name=WP_000684023.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461508.1;locus_tag=C9E96_RS20380;product=oxidoreductase;protein_id=WP_000684023.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	25069	25917	.	-	.	ID=gene-C9E96_RS20385;Name=C9E96_RS20385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20385;old_locus_tag=C9E96_20905
NZ_PYJX01000204.1	Protein Homology	CDS	25069	25917	.	-	0	ID=cds-WP_023209427.1;Parent=gene-C9E96_RS20385;Dbxref=GenBank:WP_023209427.1;Name=WP_023209427.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461507.1;locus_tag=C9E96_RS20385;product=MurR/RpiR family transcriptional regulator;protein_id=WP_023209427.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	26033	26926	.	+	.	ID=gene-C9E96_RS20390;Name=murQ;gbkey=Gene;gene=murQ;gene_biotype=protein_coding;locus_tag=C9E96_RS20390;old_locus_tag=C9E96_20910
NZ_PYJX01000204.1	Protein Homology	CDS	26033	26926	.	+	0	ID=cds-WP_001048530.1;Parent=gene-C9E96_RS20390;Dbxref=GenBank:WP_001048530.1;Name=WP_001048530.1;Ontology_term=GO:0009254,GO:0046348,GO:0016835;gbkey=CDS;gene=murQ;go_function=carbon-oxygen lyase activity|0016835||IEA;go_process=peptidoglycan turnover|0009254||IEA,amino sugar catabolic process|0046348||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461506.1;locus_tag=C9E96_RS20390;product=N-acetylmuramic acid 6-phosphate etherase;protein_id=WP_001048530.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	26937	28298	.	+	.	ID=gene-C9E96_RS20395;Name=C9E96_RS20395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20395;old_locus_tag=C9E96_20915
NZ_PYJX01000204.1	Protein Homology	CDS	26937	28298	.	+	0	ID=cds-WP_135494541.1;Parent=gene-C9E96_RS20395;Dbxref=GenBank:WP_135494541.1;Name=WP_135494541.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461505.1;locus_tag=C9E96_RS20395;product=PTS transporter subunit EIIC;protein_id=WP_135494541.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	28302	28937	.	+	.	ID=gene-C9E96_RS20400;Name=yfhb;gbkey=Gene;gene=yfhb;gene_biotype=protein_coding;locus_tag=C9E96_RS20400;old_locus_tag=C9E96_20920
NZ_PYJX01000204.1	Protein Homology	CDS	28302	28937	.	+	0	ID=cds-WP_000253558.1;Parent=gene-C9E96_RS20400;Dbxref=GenBank:WP_000253558.1;Name=WP_000253558.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yfhb;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461504.1;locus_tag=C9E96_RS20400;product=phosphatidylglycerophosphatase C;protein_id=WP_000253558.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	28962	29513	.	+	.	ID=gene-C9E96_RS20405;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=C9E96_RS20405;old_locus_tag=C9E96_20925
NZ_PYJX01000204.1	Protein Homology	CDS	28962	29513	.	+	0	ID=cds-WP_001134563.1;Parent=gene-C9E96_RS20405;Dbxref=GenBank:WP_001134563.1;Name=WP_001134563.1;Ontology_term=GO:0002100,GO:0008251,GO:0008270;gbkey=CDS;gene=tadA;go_function=tRNA-specific adenosine deaminase activity|0008251||IEA,zinc ion binding|0008270||IEA;go_process=tRNA wobble adenosine to inosine editing|0002100||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461503.1;locus_tag=C9E96_RS20405;product=tRNA adenosine(34) deaminase TadA;protein_id=WP_001134563.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	29564	31108	.	-	.	ID=gene-C9E96_RS20410;Name=mltF;gbkey=Gene;gene=mltF;gene_biotype=protein_coding;locus_tag=C9E96_RS20410;old_locus_tag=C9E96_20930
NZ_PYJX01000204.1	Protein Homology	CDS	29564	31108	.	-	0	ID=cds-WP_001650370.1;Parent=gene-C9E96_RS20410;Dbxref=GenBank:WP_001650370.1;Name=WP_001650370.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltF;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461502.1;locus_tag=C9E96_RS20410;product=membrane-bound lytic murein transglycosylase MltF;protein_id=WP_001650370.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	31109	31339	.	-	.	ID=gene-C9E96_RS20415;Name=C9E96_RS20415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20415;old_locus_tag=C9E96_20935
NZ_PYJX01000204.1	Protein Homology	CDS	31109	31339	.	-	0	ID=cds-WP_001667158.1;Parent=gene-C9E96_RS20415;Dbxref=GenBank:WP_001667158.1;Name=WP_001667158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001669324.1;locus_tag=C9E96_RS20415;product=hypothetical protein;protein_id=WP_001667158.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	31364	35251	.	+	.	ID=gene-C9E96_RS20420;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;gene_synonym=purI;locus_tag=C9E96_RS20420;old_locus_tag=C9E96_20940
NZ_PYJX01000204.1	Protein Homology	CDS	31364	35251	.	+	0	ID=cds-WP_000970048.1;Parent=gene-C9E96_RS20420;Dbxref=GenBank:WP_000970048.1;Name=WP_000970048.1;Ontology_term=GO:0004642;gbkey=CDS;gene=purL;go_function=phosphoribosylformylglycinamidine synthase activity|0004642||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461500.1;locus_tag=C9E96_RS20420;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_000970048.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	35756	37186	.	+	.	ID=gene-C9E96_RS20425;Name=qseE;gbkey=Gene;gene=qseE;gene_biotype=protein_coding;locus_tag=C9E96_RS20425;old_locus_tag=C9E96_20945
NZ_PYJX01000204.1	Protein Homology	CDS	35756	37186	.	+	0	ID=cds-WP_001670672.1;Parent=gene-C9E96_RS20425;Dbxref=GenBank:WP_001670672.1;Name=WP_001670672.1;gbkey=CDS;gene=qseE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001676035.1;locus_tag=C9E96_RS20425;product=two component system sensor histidine kinase QseE/GlrK;protein_id=WP_001670672.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	37188	37952	.	+	.	ID=gene-C9E96_RS20430;Name=qseG;gbkey=Gene;gene=qseG;gene_biotype=protein_coding;locus_tag=C9E96_RS20430;old_locus_tag=C9E96_20950
NZ_PYJX01000204.1	Protein Homology	CDS	37188	37952	.	+	0	ID=cds-WP_001054234.1;Parent=gene-C9E96_RS20430;Dbxref=GenBank:WP_001054234.1;Name=WP_001054234.1;gbkey=CDS;gene=qseG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461498.1;locus_tag=C9E96_RS20430;product=two-component system QseEF-associated lipoprotein QseG;protein_id=WP_001054234.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	37952	39286	.	+	.	ID=gene-C9E96_RS20435;Name=glrR;gbkey=Gene;gene=glrR;gene_biotype=protein_coding;locus_tag=C9E96_RS20435;old_locus_tag=C9E96_20955
NZ_PYJX01000204.1	Protein Homology	CDS	37952	39286	.	+	0	ID=cds-WP_024131115.1;Parent=gene-C9E96_RS20435;Dbxref=GenBank:WP_024131115.1;Name=WP_024131115.1;Ontology_term=GO:0000160,GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;gene=glrR;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311447.1;locus_tag=C9E96_RS20435;product=two-component system response regulator GlrR;protein_id=WP_024131115.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	39363	39701	.	+	.	ID=gene-C9E96_RS20440;Name=glnB;gbkey=Gene;gene=glnB;gene_biotype=protein_coding;locus_tag=C9E96_RS20440;old_locus_tag=C9E96_20960
NZ_PYJX01000204.1	Protein Homology	CDS	39363	39701	.	+	0	ID=cds-WP_000717694.1;Parent=gene-C9E96_RS20440;Dbxref=GenBank:WP_000717694.1;Name=WP_000717694.1;gbkey=CDS;gene=glnB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017373484.1;locus_tag=C9E96_RS20440;product=nitrogen regulatory protein P-II;protein_id=WP_000717694.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	39750	41210	.	-	.	ID=gene-C9E96_RS20445;Name=C9E96_RS20445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20445;old_locus_tag=C9E96_20965
NZ_PYJX01000204.1	Protein Homology	CDS	39750	41210	.	-	0	ID=cds-WP_135369801.1;Parent=gene-C9E96_RS20445;Dbxref=GenBank:WP_135369801.1;Name=WP_135369801.1;Ontology_term=GO:0015833,GO:0015333,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=peptide:proton symporter activity|0015333||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461495.1;locus_tag=C9E96_RS20445;product=oligopeptide:H+ symporter;protein_id=WP_135369801.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	gene	41266	43410	.	-	.	ID=gene-C9E96_RS20450;Name=cadA;gbkey=Gene;gene=cadA;gene_biotype=protein_coding;locus_tag=C9E96_RS20450;old_locus_tag=C9E96_20970
NZ_PYJX01000204.1	Protein Homology	CDS	41266	43410	.	-	0	ID=cds-WP_001100652.1;Parent=gene-C9E96_RS20450;Dbxref=GenBank:WP_001100652.1;Name=WP_001100652.1;gbkey=CDS;gene=cadA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461494.1;locus_tag=C9E96_RS20450;product=lysine decarboxylase CadA;protein_id=WP_001100652.1;transl_table=11
NZ_PYJX01000204.1	RefSeq	pseudogene	43493	43952	.	-	.	ID=gene-C9E96_RS20455;Name=cadB;end_range=43952,.;gbkey=Gene;gene=cadB;gene_biotype=pseudogene;locus_tag=C9E96_RS20455;old_locus_tag=C9E96_20975;partial=true;pseudo=true
NZ_PYJX01000204.1	Protein Homology	CDS	43493	43952	.	-	1	ID=cds-C9E96_RS20455;Parent=gene-C9E96_RS20455;Note=antiporter protein responsible for lysine import and cadaverine export%3B member of the lysine-dependent acid resistance system 4 (AR4)%3B inner membrane protein%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=43952,.;gbkey=CDS;gene=cadB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461493.1;locus_tag=C9E96_RS20455;partial=true;product=cadaverine/lysine antiporter;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000238.1 1 233
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000238.1	RefSeq	region	1	233	.	+	.	ID=NZ_PYJX01000238.1:1..233;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000238.1	RefSeq	pseudogene	48	227	.	-	.	ID=gene-C9E96_RS22615;Name=nadE;end_range=227,.;gbkey=Gene;gene=nadE;gene_biotype=pseudogene;locus_tag=C9E96_RS22615;old_locus_tag=C9E96_23190;partial=true;pseudo=true;start_range=.,48
NZ_PYJX01000238.1	Protein Homology	CDS	48	227	.	-	0	ID=cds-C9E96_RS22615;Parent=gene-C9E96_RS22615;Note=catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=227,.;gbkey=CDS;gene=nadE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460276.1;locus_tag=C9E96_RS22615;partial=true;product=ammonia-dependent NAD(+) synthetase;pseudo=true;start_range=.,48;transl_table=11
##sequence-region NZ_PYJX01000054.1 1 42032
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000054.1	RefSeq	region	1	42032	.	+	.	ID=NZ_PYJX01000054.1:1..42032;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000054.1	RefSeq	pseudogene	1	307	.	+	.	ID=gene-C9E96_RS04645;Name=sthE;gbkey=Gene;gene=sthE;gene_biotype=pseudogene;locus_tag=C9E96_RS04645;old_locus_tag=C9E96_04755;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000054.1	Protein Homology	CDS	1	307	.	+	1	ID=cds-C9E96_RS04645;Parent=gene-C9E96_RS04645;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=sthE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463447.1;locus_tag=C9E96_RS04645;partial=true;product=fimbrial major subunit SthE;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	365	1714	.	-	.	ID=gene-C9E96_RS04650;Name=creD;gbkey=Gene;gene=creD;gene_biotype=protein_coding;locus_tag=C9E96_RS04650;old_locus_tag=C9E96_04760
NZ_PYJX01000054.1	Protein Homology	CDS	365	1714	.	-	0	ID=cds-WP_023258244.1;Parent=gene-C9E96_RS04650;Dbxref=GenBank:WP_023258244.1;Name=WP_023258244.1;gbkey=CDS;gene=creD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463446.1;locus_tag=C9E96_RS04650;product=cell envelope integrity protein CreD;protein_id=WP_023258244.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	1772	3196	.	-	.	ID=gene-C9E96_RS04655;Name=creC;gbkey=Gene;gene=creC;gene_biotype=protein_coding;locus_tag=C9E96_RS04655;old_locus_tag=C9E96_04765
NZ_PYJX01000054.1	Protein Homology	CDS	1772	3196	.	-	0	ID=cds-WP_135493892.1;Parent=gene-C9E96_RS04655;Dbxref=GenBank:WP_135493892.1;Name=WP_135493892.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=creC;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463445.1;locus_tag=C9E96_RS04655;product=two-component system sensor histidine kinase CreC;protein_id=WP_135493892.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	3196	3885	.	-	.	ID=gene-C9E96_RS04660;Name=creB;gbkey=Gene;gene=creB;gene_biotype=protein_coding;locus_tag=C9E96_RS04660;old_locus_tag=C9E96_04770
NZ_PYJX01000054.1	Protein Homology	CDS	3196	3885	.	-	0	ID=cds-WP_001187046.1;Parent=gene-C9E96_RS04660;Dbxref=GenBank:WP_001187046.1;Name=WP_001187046.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=creB;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463444.1;locus_tag=C9E96_RS04660;product=two-component system response regulator CreB;protein_id=WP_001187046.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	3898	4371	.	-	.	ID=gene-C9E96_RS04665;Name=creA;gbkey=Gene;gene=creA;gene_biotype=protein_coding;locus_tag=C9E96_RS04665;old_locus_tag=C9E96_04775
NZ_PYJX01000054.1	Protein Homology	CDS	3898	4371	.	-	0	ID=cds-WP_000875811.1;Parent=gene-C9E96_RS04665;Dbxref=GenBank:WP_000875811.1;Name=WP_000875811.1;gbkey=CDS;gene=creA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463443.1;locus_tag=C9E96_RS04665;product=protein CreA;protein_id=WP_000875811.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	4583	5452	.	+	.	ID=gene-C9E96_RS04670;Name=robA;gbkey=Gene;gene=robA;gene_biotype=protein_coding;locus_tag=C9E96_RS04670;old_locus_tag=C9E96_04780
NZ_PYJX01000054.1	Protein Homology	CDS	4583	5452	.	+	0	ID=cds-WP_000371685.1;Parent=gene-C9E96_RS04670;Dbxref=GenBank:WP_000371685.1;Name=WP_000371685.1;gbkey=CDS;gene=robA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463442.1;locus_tag=C9E96_RS04670;product=MDR efflux pump AcrAB transcriptional activator RobA;protein_id=WP_000371685.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	5449	6096	.	-	.	ID=gene-C9E96_RS04675;Name=gpmB;gbkey=Gene;gene=gpmB;gene_biotype=protein_coding;locus_tag=C9E96_RS04675;old_locus_tag=C9E96_04785
NZ_PYJX01000054.1	Protein Homology	CDS	5449	6096	.	-	0	ID=cds-WP_000942363.1;Parent=gene-C9E96_RS04675;Dbxref=GenBank:WP_000942363.1;Name=WP_000942363.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmB;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463441.1;locus_tag=C9E96_RS04675;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB;protein_id=WP_000942363.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	6145	6660	.	+	.	ID=gene-C9E96_RS04680;Name=yjjX;gbkey=Gene;gene=yjjX;gene_biotype=protein_coding;locus_tag=C9E96_RS04680;old_locus_tag=C9E96_04790
NZ_PYJX01000054.1	Protein Homology	CDS	6145	6660	.	+	0	ID=cds-WP_080203726.1;Parent=gene-C9E96_RS04680;Dbxref=GenBank:WP_080203726.1;Name=WP_080203726.1;gbkey=CDS;gene=yjjX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463440.1;locus_tag=C9E96_RS04680;product=inosine/xanthosine triphosphatase;protein_id=WP_080203726.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	6762	7088	.	-	.	ID=gene-C9E96_RS04690;Name=trpR;gbkey=Gene;gene=trpR;gene_biotype=protein_coding;locus_tag=C9E96_RS04690;old_locus_tag=C9E96_04800
NZ_PYJX01000054.1	Protein Homology	CDS	6762	7088	.	-	0	ID=cds-WP_000192003.1;Parent=gene-C9E96_RS04690;Dbxref=GenBank:WP_000192003.1;Name=WP_000192003.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=trpR;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463439.1;locus_tag=C9E96_RS04690;product=trp operon repressor;protein_id=WP_000192003.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	7146	9083	.	-	.	ID=gene-C9E96_RS04695;Name=sltY;gbkey=Gene;gene=sltY;gene_biotype=protein_coding;locus_tag=C9E96_RS04695;old_locus_tag=C9E96_04805
NZ_PYJX01000054.1	Protein Homology	CDS	7146	9083	.	-	0	ID=cds-WP_000373272.1;Parent=gene-C9E96_RS04695;Dbxref=GenBank:WP_000373272.1;Name=WP_000373272.1;Ontology_term=GO:0000270,GO:0004553,GO:0008933,GO:0016020,GO:0042597;gbkey=CDS;gene=sltY;go_component=membrane|0016020||IEA,periplasmic space|0042597||IEA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016155637.1;locus_tag=C9E96_RS04695;product=murein transglycosylase;protein_id=WP_000373272.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	9292	10959	.	+	.	ID=gene-C9E96_RS04700;Name=ettA;gbkey=Gene;gene=ettA;gene_biotype=protein_coding;locus_tag=C9E96_RS04700;old_locus_tag=C9E96_04815
NZ_PYJX01000054.1	Protein Homology	CDS	9292	10959	.	+	0	ID=cds-WP_000046770.1;Parent=gene-C9E96_RS04700;Dbxref=GenBank:WP_000046770.1;Name=WP_000046770.1;Ontology_term=GO:0045900,GO:0005524;gbkey=CDS;gene=ettA;go_function=ATP binding|0005524||IEA;go_process=negative regulation of translational elongation|0045900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017145039.1;locus_tag=C9E96_RS04700;product=energy-dependent translational throttle protein EttA;protein_id=WP_000046770.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	11077	12309	.	-	.	ID=gene-C9E96_RS04705;Name=nadR;gbkey=Gene;gene=nadR;gene_biotype=protein_coding;locus_tag=C9E96_RS04705;old_locus_tag=C9E96_04820
NZ_PYJX01000054.1	Protein Homology	CDS	11077	12309	.	-	0	ID=cds-WP_001532645.1;Parent=gene-C9E96_RS04705;Dbxref=GenBank:WP_001532645.1;Name=WP_001532645.1;Ontology_term=GO:0009058,GO:0000309,GO:0003677,GO:0050262;gbkey=CDS;gene=nadR;go_function=nicotinamide-nucleotide adenylyltransferase activity|0000309||IEA,DNA binding|0003677||IEA,ribosylnicotinamide kinase activity|0050262||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463436.5;locus_tag=C9E96_RS04705;product=multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR;protein_id=WP_001532645.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	12460	13842	.	-	.	ID=gene-C9E96_RS04710;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=C9E96_RS04710;old_locus_tag=C9E96_04825
NZ_PYJX01000054.1	Protein Homology	CDS	12460	13842	.	-	0	ID=cds-WP_001029720.1;Parent=gene-C9E96_RS04710;Dbxref=GenBank:WP_001029720.1;Name=WP_001029720.1;Ontology_term=GO:0006281,GO:0003684,GO:0005524;gbkey=CDS;gene=radA;go_function=damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001399683.1;locus_tag=C9E96_RS04710;product=DNA repair protein RadA;protein_id=WP_001029720.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	13926	14894	.	-	.	ID=gene-C9E96_RS04715;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=C9E96_RS04715;old_locus_tag=C9E96_04830
NZ_PYJX01000054.1	Protein Homology	CDS	13926	14894	.	-	0	ID=cds-WP_001132983.1;Parent=gene-C9E96_RS04715;Dbxref=GenBank:WP_001132983.1;Name=WP_001132983.1;Ontology_term=GO:0006564,GO:0036424;gbkey=CDS;gene=serB;go_function=L-phosphoserine phosphatase activity|0036424||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463434.1;locus_tag=C9E96_RS04715;product=phosphoserine phosphatase;protein_id=WP_001132983.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	15011	15655	.	+	.	ID=gene-C9E96_RS04725;Name=C9E96_RS04725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04725;old_locus_tag=C9E96_04840
NZ_PYJX01000054.1	Protein Homology	CDS	15011	15655	.	+	0	ID=cds-WP_000090067.1;Parent=gene-C9E96_RS04725;Dbxref=GenBank:WP_000090067.1;Name=WP_000090067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463433.2;locus_tag=C9E96_RS04725;product=YtjB family periplasmic protein;protein_id=WP_000090067.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	15689	16705	.	+	.	ID=gene-C9E96_RS04730;Name=lplA;gbkey=Gene;gene=lplA;gene_biotype=protein_coding;locus_tag=C9E96_RS04730;old_locus_tag=C9E96_04845
NZ_PYJX01000054.1	Protein Homology	CDS	15689	16705	.	+	0	ID=cds-WP_135493894.1;Parent=gene-C9E96_RS04730;Dbxref=GenBank:WP_135493894.1;Name=WP_135493894.1;gbkey=CDS;gene=lplA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463432.1;locus_tag=C9E96_RS04730;product=lipoate--protein ligase LplA;protein_id=WP_135493894.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	16710	18038	.	-	.	ID=gene-C9E96_RS04735;Name=yjjJ;gbkey=Gene;gene=yjjJ;gene_biotype=protein_coding;locus_tag=C9E96_RS04735;old_locus_tag=C9E96_04850
NZ_PYJX01000054.1	Protein Homology	CDS	16710	18038	.	-	0	ID=cds-WP_023204489.1;Parent=gene-C9E96_RS04735;Dbxref=GenBank:WP_023204489.1;Name=WP_023204489.1;gbkey=CDS;gene=yjjJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747246.1;locus_tag=C9E96_RS04735;product=type II toxin-antitoxin system HipA family toxin YjjJ;protein_id=WP_023204489.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	18217	18936	.	-	.	ID=gene-C9E96_RS04740;Name=deoD;gbkey=Gene;gene=deoD;gene_biotype=protein_coding;locus_tag=C9E96_RS04740;old_locus_tag=C9E96_04855
NZ_PYJX01000054.1	Protein Homology	CDS	18217	18936	.	-	0	ID=cds-WP_076731246.1;Parent=gene-C9E96_RS04740;Dbxref=GenBank:WP_076731246.1;Name=WP_076731246.1;Ontology_term=GO:0006139,GO:0004731;gbkey=CDS;gene=deoD;go_function=purine-nucleoside phosphorylase activity|0004731||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463426.1;locus_tag=C9E96_RS04740;product=purine-nucleoside phosphorylase;protein_id=WP_076731246.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	19146	20369	.	-	.	ID=gene-C9E96_RS04745;Name=deoB;gbkey=Gene;gene=deoB;gene_biotype=protein_coding;locus_tag=C9E96_RS04745;old_locus_tag=C9E96_04860
NZ_PYJX01000054.1	Protein Homology	CDS	19146	20369	.	-	0	ID=cds-WP_000816454.1;Parent=gene-C9E96_RS04745;Dbxref=GenBank:WP_000816454.1;Name=WP_000816454.1;Ontology_term=GO:0009117,GO:0043094,GO:0000287,GO:0008973,GO:0005737;gbkey=CDS;gene=deoB;go_component=cytoplasm|0005737||IEA;go_function=magnesium ion binding|0000287||IEA,phosphopentomutase activity|0008973||IEA;go_process=nucleotide metabolic process|0009117||IEA,metabolic compound salvage|0043094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463425.1;locus_tag=C9E96_RS04745;product=phosphopentomutase;protein_id=WP_000816454.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	20421	21743	.	-	.	ID=gene-C9E96_RS04750;Name=deoA;gbkey=Gene;gene=deoA;gene_biotype=protein_coding;locus_tag=C9E96_RS04750;old_locus_tag=C9E96_04865
NZ_PYJX01000054.1	Protein Homology	CDS	20421	21743	.	-	0	ID=cds-WP_000477838.1;Parent=gene-C9E96_RS04750;Dbxref=GenBank:WP_000477838.1;Name=WP_000477838.1;Ontology_term=GO:0006213,GO:0009032;gbkey=CDS;gene=deoA;go_function=thymidine phosphorylase activity|0009032||IEA;go_process=pyrimidine nucleoside metabolic process|0006213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123902.1;locus_tag=C9E96_RS04750;product=thymidine phosphorylase;protein_id=WP_000477838.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	21867	22646	.	-	.	ID=gene-C9E96_RS04755;Name=deoC;gbkey=Gene;gene=deoC;gene_biotype=protein_coding;locus_tag=C9E96_RS04755;old_locus_tag=C9E96_04870
NZ_PYJX01000054.1	Protein Homology	CDS	21867	22646	.	-	0	ID=cds-WP_001519713.1;Parent=gene-C9E96_RS04755;Dbxref=GenBank:WP_001519713.1;Name=WP_001519713.1;Ontology_term=GO:0009264,GO:0004139,GO:0005737;gbkey=CDS;gene=deoC;go_component=cytoplasm|0005737||IEA;go_function=deoxyribose-phosphate aldolase activity|0004139||IEA;go_process=deoxyribonucleotide catabolic process|0009264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005097947.1;locus_tag=C9E96_RS04755;product=deoxyribose-phosphate aldolase;protein_id=WP_001519713.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	22906	24456	.	+	.	ID=gene-C9E96_RS04760;Name=C9E96_RS04760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04760;old_locus_tag=C9E96_04875
NZ_PYJX01000054.1	Protein Homology	CDS	22906	24456	.	+	0	ID=cds-WP_135369834.1;Parent=gene-C9E96_RS04760;Dbxref=GenBank:WP_135369834.1;Name=WP_135369834.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463422.1;locus_tag=C9E96_RS04760;product=YjjI family glycine radical enzyme;protein_id=WP_135369834.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	24428	25291	.	+	.	ID=gene-C9E96_RS04765;Name=C9E96_RS04765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04765;old_locus_tag=C9E96_04880
NZ_PYJX01000054.1	Protein Homology	CDS	24428	25291	.	+	0	ID=cds-WP_001064941.1;Parent=gene-C9E96_RS04765;Dbxref=GenBank:WP_001064941.1;Name=WP_001064941.1;Ontology_term=GO:0051539,GO:1904047;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463421.1;locus_tag=C9E96_RS04765;product=YjjW family glycine radical enzyme activase;protein_id=WP_001064941.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	25324	26097	.	-	.	ID=gene-C9E96_RS04770;Name=C9E96_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04770;old_locus_tag=C9E96_04885
NZ_PYJX01000054.1	Protein Homology	CDS	25324	26097	.	-	0	ID=cds-WP_135493896.1;Parent=gene-C9E96_RS04770;Dbxref=GenBank:WP_135493896.1;Name=WP_135493896.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463420.1;locus_tag=C9E96_RS04770;product=metal-dependent hydrolase;protein_id=WP_135493896.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	26094	27167	.	-	.	ID=gene-C9E96_RS04775;Name=C9E96_RS04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04775;old_locus_tag=C9E96_04890
NZ_PYJX01000054.1	Protein Homology	CDS	26094	27167	.	-	0	ID=cds-WP_000531540.1;Parent=gene-C9E96_RS04775;Dbxref=GenBank:WP_000531540.1;Name=WP_000531540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463419.1;locus_tag=C9E96_RS04775;product=patatin-like phospholipase family protein;protein_id=WP_000531540.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	27291	27452	.	-	.	ID=gene-C9E96_RS04780;Name=C9E96_RS04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04780;old_locus_tag=C9E96_04895
NZ_PYJX01000054.1	Protein Homology	CDS	27291	27452	.	-	0	ID=cds-WP_000490276.1;Parent=gene-C9E96_RS04780;Dbxref=GenBank:WP_000490276.1;Name=WP_000490276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002887716.1;locus_tag=C9E96_RS04780;product=DUF1328 domain-containing protein;protein_id=WP_000490276.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	27581	28198	.	-	.	ID=gene-C9E96_RS04785;Name=osmY;gbkey=Gene;gene=osmY;gene_biotype=protein_coding;locus_tag=C9E96_RS04785;old_locus_tag=C9E96_04900
NZ_PYJX01000054.1	Protein Homology	CDS	27581	28198	.	-	0	ID=cds-WP_000178963.1;Parent=gene-C9E96_RS04785;Dbxref=GenBank:WP_000178963.1;Name=WP_000178963.1;gbkey=CDS;gene=osmY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463417.1;locus_tag=C9E96_RS04785;product=molecular chaperone OsmY;protein_id=WP_000178963.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	28601	30190	.	-	.	ID=gene-C9E96_RS04790;Name=prfC;gbkey=Gene;gene=prfC;gene_biotype=protein_coding;locus_tag=C9E96_RS04790;old_locus_tag=C9E96_04905
NZ_PYJX01000054.1	Protein Homology	CDS	28601	30190	.	-	0	ID=cds-WP_000175966.1;Parent=gene-C9E96_RS04790;Dbxref=GenBank:WP_000175966.1;Name=WP_000175966.1;Ontology_term=GO:0006415,GO:0003747,GO:0003924,GO:0005525;gbkey=CDS;gene=prfC;go_function=translation release factor activity|0003747||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123889.1;locus_tag=C9E96_RS04790;product=peptide chain release factor 3;protein_id=WP_000175966.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	30282	30959	.	-	.	ID=gene-C9E96_RS04795;Name=yjjG;gbkey=Gene;gene=yjjG;gene_biotype=protein_coding;locus_tag=C9E96_RS04795;old_locus_tag=C9E96_04910
NZ_PYJX01000054.1	Protein Homology	CDS	30282	30959	.	-	0	ID=cds-WP_000870686.1;Parent=gene-C9E96_RS04795;Dbxref=GenBank:WP_000870686.1;Name=WP_000870686.1;Ontology_term=GO:0008253;gbkey=CDS;gene=yjjG;go_function=5'-nucleotidase activity|0008253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313359.1;locus_tag=C9E96_RS04795;product=pyrimidine 5'-nucleotidase;protein_id=WP_000870686.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	30981	31427	.	-	.	ID=gene-C9E96_RS04800;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=C9E96_RS04800;old_locus_tag=C9E96_04915
NZ_PYJX01000054.1	Protein Homology	CDS	30981	31427	.	-	0	ID=cds-WP_001092435.1;Parent=gene-C9E96_RS04800;Dbxref=GenBank:WP_001092435.1;Name=WP_001092435.1;Ontology_term=GO:0006474,GO:0008080;gbkey=CDS;gene=rimI;go_function=N-acetyltransferase activity|0008080||IEA;go_process=N-terminal protein amino acid acetylation|0006474||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463414.1;locus_tag=C9E96_RS04800;product=ribosomal protein S18-alanine N-acetyltransferase;protein_id=WP_001092435.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	31372	31809	.	-	.	ID=gene-C9E96_RS04805;Name=C9E96_RS04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04805;old_locus_tag=C9E96_04920
NZ_PYJX01000054.1	Protein Homology	CDS	31372	31809	.	-	0	ID=cds-WP_039517394.1;Parent=gene-C9E96_RS04805;Dbxref=GenBank:WP_039517394.1;Name=WP_039517394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463413.1;locus_tag=C9E96_RS04805;product=DNA polymerase III subunit psi;protein_id=WP_039517394.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	31912	32940	.	+	.	ID=gene-C9E96_RS04810;Name=rsmC;gbkey=Gene;gene=rsmC;gene_biotype=protein_coding;locus_tag=C9E96_RS04810;old_locus_tag=C9E96_04925
NZ_PYJX01000054.1	Protein Homology	CDS	31912	32940	.	+	0	ID=cds-WP_080203722.1;Parent=gene-C9E96_RS04810;Dbxref=GenBank:WP_080203722.1;Name=WP_080203722.1;Ontology_term=GO:0006364,GO:0003676,GO:0008990;gbkey=CDS;gene=rsmC;go_function=nucleic acid binding|0003676||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463412.1;locus_tag=C9E96_RS04810;product=16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC;protein_id=WP_080203722.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	33131	33217	.	+	.	ID=gene-C9E96_RS04815;Name=C9E96_RS04815;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS04815;old_locus_tag=C9E96_04930
NZ_PYJX01000054.1	tRNAscan-SE	tRNA	33131	33217	.	+	.	ID=rna-C9E96_RS04815;Parent=gene-C9E96_RS04815;anticodon=(pos:33165..33167);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04815;product=tRNA-Leu
NZ_PYJX01000054.1	tRNAscan-SE	exon	33131	33217	.	+	.	ID=exon-C9E96_RS04815-1;Parent=rna-C9E96_RS04815;anticodon=(pos:33165..33167);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS04815;product=tRNA-Leu
NZ_PYJX01000054.1	RefSeq	gene	33249	33485	.	-	.	ID=gene-C9E96_RS04820;Name=C9E96_RS04820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04820;old_locus_tag=C9E96_04935
NZ_PYJX01000054.1	Protein Homology	CDS	33249	33485	.	-	0	ID=cds-WP_000941879.1;Parent=gene-C9E96_RS04820;Dbxref=GenBank:WP_000941879.1;Name=WP_000941879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463411.1;locus_tag=C9E96_RS04820;product=DUF1435 domain-containing protein;protein_id=WP_000941879.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	33736	34800	.	+	.	ID=gene-C9E96_RS04825;Name=C9E96_RS04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04825;old_locus_tag=C9E96_04940
NZ_PYJX01000054.1	Protein Homology	CDS	33736	34800	.	+	0	ID=cds-WP_052932330.1;Parent=gene-C9E96_RS04825;Dbxref=GenBank:WP_052932330.1;Name=WP_052932330.1;Ontology_term=GO:0005525,GO:0046872,GO:0052621,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463410.1;locus_tag=C9E96_RS04825;product=GGDEF domain-containing protein;protein_id=WP_052932330.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	34921	35709	.	+	.	ID=gene-C9E96_RS04830;Name=fhuF;gbkey=Gene;gene=fhuF;gene_biotype=protein_coding;locus_tag=C9E96_RS04830;old_locus_tag=C9E96_04945
NZ_PYJX01000054.1	Protein Homology	CDS	34921	35709	.	+	0	ID=cds-WP_023207052.1;Parent=gene-C9E96_RS04830;Dbxref=GenBank:WP_023207052.1;Name=WP_023207052.1;Ontology_term=GO:0051537;gbkey=CDS;gene=fhuF;go_function=2 iron%2C 2 sulfur cluster binding|0051537||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463409.1;locus_tag=C9E96_RS04830;product=siderophore-iron reductase FhuF;protein_id=WP_023207052.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	35860	36318	.	+	.	ID=gene-C9E96_RS04835;Name=C9E96_RS04835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04835;old_locus_tag=C9E96_04950
NZ_PYJX01000054.1	Protein Homology	CDS	35860	36318	.	+	0	ID=cds-WP_000058276.1;Parent=gene-C9E96_RS04835;Dbxref=GenBank:WP_000058276.1;Name=WP_000058276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463408.1;locus_tag=C9E96_RS04835;product=YbaK/EbsC family protein;protein_id=WP_000058276.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	36369	37043	.	-	.	ID=gene-C9E96_RS04840;Name=bglJ;gbkey=Gene;gene=bglJ;gene_biotype=protein_coding;locus_tag=C9E96_RS04840;old_locus_tag=C9E96_04955
NZ_PYJX01000054.1	Protein Homology	CDS	36369	37043	.	-	0	ID=cds-WP_000431546.1;Parent=gene-C9E96_RS04840;Dbxref=GenBank:WP_000431546.1;Name=WP_000431546.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=bglJ;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463407.3;locus_tag=C9E96_RS04840;product=DNA-binding transcriptional activator BglJ;protein_id=WP_000431546.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	37004	37729	.	-	.	ID=gene-C9E96_RS04845;Name=C9E96_RS04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04845;old_locus_tag=C9E96_04960
NZ_PYJX01000054.1	Protein Homology	CDS	37004	37729	.	-	0	ID=cds-WP_000936661.1;Parent=gene-C9E96_RS04845;Dbxref=GenBank:WP_000936661.1;Name=WP_000936661.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463406.1;locus_tag=C9E96_RS04845;product=helix-turn-helix transcriptional regulator;protein_id=WP_000936661.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	38442	39218	.	+	.	ID=gene-C9E96_RS04850;Name=C9E96_RS04850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04850;old_locus_tag=C9E96_04965
NZ_PYJX01000054.1	Protein Homology	CDS	38442	39218	.	+	0	ID=cds-WP_001727653.1;Parent=gene-C9E96_RS04850;Dbxref=GenBank:WP_001727653.1;Name=WP_001727653.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418784.4;locus_tag=C9E96_RS04850;product=threonine/serine ThrE exporter family protein;protein_id=WP_001727653.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	39209	39682	.	+	.	ID=gene-C9E96_RS04855;Name=C9E96_RS04855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04855;old_locus_tag=C9E96_04970
NZ_PYJX01000054.1	Protein Homology	CDS	39209	39682	.	+	0	ID=cds-WP_000511329.1;Parent=gene-C9E96_RS04855;Dbxref=GenBank:WP_000511329.1;Name=WP_000511329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463404.1;locus_tag=C9E96_RS04855;product=threonine/serine exporter;protein_id=WP_000511329.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	39775	40314	.	+	.	ID=gene-C9E96_RS04860;Name=dnaT;gbkey=Gene;gene=dnaT;gene_biotype=protein_coding;locus_tag=C9E96_RS04860;old_locus_tag=C9E96_04975
NZ_PYJX01000054.1	Protein Homology	CDS	39775	40314	.	+	0	ID=cds-WP_000098578.1;Parent=gene-C9E96_RS04860;Dbxref=GenBank:WP_000098578.1;Name=WP_000098578.1;gbkey=CDS;gene=dnaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463403.1;locus_tag=C9E96_RS04860;product=primosomal protein DnaT;protein_id=WP_000098578.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	40317	41054	.	+	.	ID=gene-C9E96_RS04865;Name=dnaC;gbkey=Gene;gene=dnaC;gene_biotype=protein_coding;locus_tag=C9E96_RS04865;old_locus_tag=C9E96_04980
NZ_PYJX01000054.1	Protein Homology	CDS	40317	41054	.	+	0	ID=cds-WP_000799924.1;Parent=gene-C9E96_RS04865;Dbxref=GenBank:WP_000799924.1;Name=WP_000799924.1;gbkey=CDS;gene=dnaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463402.1;locus_tag=C9E96_RS04865;product=DNA replication protein DnaC;protein_id=WP_000799924.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	gene	41112	41573	.	+	.	ID=gene-C9E96_RS04870;Name=C9E96_RS04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04870;old_locus_tag=C9E96_04985
NZ_PYJX01000054.1	Protein Homology	CDS	41112	41573	.	+	0	ID=cds-WP_001090314.1;Parent=gene-C9E96_RS04870;Dbxref=GenBank:WP_001090314.1;Name=WP_001090314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463401.1;locus_tag=C9E96_RS04870;product=DUF2501 domain-containing protein;protein_id=WP_001090314.1;transl_table=11
NZ_PYJX01000054.1	RefSeq	pseudogene	41856	42002	.	+	.	ID=gene-C9E96_RS23935;Name=C9E96_RS23935;end_range=42002,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23935;partial=true;pseudo=true
NZ_PYJX01000054.1	Protein Homology	CDS	41856	42002	.	+	0	ID=cds-C9E96_RS23935;Parent=gene-C9E96_RS23935;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=42002,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418779.2;locus_tag=C9E96_RS23935;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000165.1 1 124403
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000165.1	RefSeq	region	1	124403	.	+	.	ID=NZ_PYJX01000165.1:1..124403;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000165.1	RefSeq	gene	1	759	.	+	.	ID=gene-C9E96_RS14960;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=C9E96_RS14960;old_locus_tag=C9E96_15340;partial=true;start_range=.,1
NZ_PYJX01000165.1	Protein Homology	CDS	1	759	.	+	0	ID=cds-WP_245306432.1;Parent=gene-C9E96_RS14960;Dbxref=GenBank:WP_245306432.1;Name=WP_245306432.1;Ontology_term=GO:0009249,GO:0008961,GO:0016020;gbkey=CDS;gene=lgt;go_component=membrane|0016020||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461919.1;locus_tag=C9E96_RS14960;partial=true;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_245306432.1;start_range=.,1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	766	1560	.	+	.	ID=gene-C9E96_RS14965;Name=thyA;gbkey=Gene;gene=thyA;gene_biotype=protein_coding;locus_tag=C9E96_RS14965;old_locus_tag=C9E96_15345
NZ_PYJX01000165.1	Protein Homology	CDS	766	1560	.	+	0	ID=cds-WP_000816247.1;Parent=gene-C9E96_RS14965;Dbxref=GenBank:WP_000816247.1;Name=WP_000816247.1;Ontology_term=GO:0006231,GO:0004799;gbkey=CDS;gene=thyA;go_function=thymidylate synthase activity|0004799||IEA;go_process=dTMP biosynthetic process|0006231||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123418.1;locus_tag=C9E96_RS14965;product=thymidylate synthase;protein_id=WP_000816247.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	1745	2215	.	+	.	ID=gene-C9E96_RS14975;Name=C9E96_RS14975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14975;old_locus_tag=C9E96_15355
NZ_PYJX01000165.1	Protein Homology	CDS	1745	2215	.	+	0	ID=cds-WP_000744668.1;Parent=gene-C9E96_RS14975;Dbxref=GenBank:WP_000744668.1;Name=WP_000744668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019077605.1;locus_tag=C9E96_RS14975;product=prepilin peptidase-dependent protein;protein_id=WP_000744668.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	2206	2769	.	+	.	ID=gene-C9E96_RS14980;Name=C9E96_RS14980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14980;old_locus_tag=C9E96_15360
NZ_PYJX01000165.1	Protein Homology	CDS	2206	2769	.	+	0	ID=cds-WP_000029149.1;Parent=gene-C9E96_RS14980;Dbxref=GenBank:WP_000029149.1;Name=WP_000029149.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461916.1;locus_tag=C9E96_RS14980;product=prepilin peptidase-dependent protein;protein_id=WP_000029149.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	2766	3173	.	+	.	ID=gene-C9E96_RS14985;Name=C9E96_RS14985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14985;old_locus_tag=C9E96_15365
NZ_PYJX01000165.1	Protein Homology	CDS	2766	3173	.	+	0	ID=cds-WP_001078530.1;Parent=gene-C9E96_RS14985;Dbxref=GenBank:WP_001078530.1;Name=WP_001078530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461915.1;locus_tag=C9E96_RS14985;product=DUF2509 family protein;protein_id=WP_001078530.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	3158	3478	.	+	.	ID=gene-C9E96_RS14990;Name=C9E96_RS14990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14990;old_locus_tag=C9E96_15370
NZ_PYJX01000165.1	Protein Homology	CDS	3158	3478	.	+	0	ID=cds-WP_000019290.1;Parent=gene-C9E96_RS14990;Dbxref=GenBank:WP_000019290.1;Name=WP_000019290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461914.1;locus_tag=C9E96_RS14990;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=WP_000019290.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	3494	6865	.	+	.	ID=gene-C9E96_RS14995;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=C9E96_RS14995;old_locus_tag=C9E96_15375
NZ_PYJX01000165.1	Protein Homology	CDS	3494	6865	.	+	0	ID=cds-WP_135494351.1;Parent=gene-C9E96_RS14995;Dbxref=GenBank:WP_135494351.1;Name=WP_135494351.1;Ontology_term=GO:0008854,GO:0009338;gbkey=CDS;gene=recC;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461913.2;locus_tag=C9E96_RS14995;product=exodeoxyribonuclease V subunit gamma;protein_id=WP_135494351.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	7043	9931	.	+	.	ID=gene-C9E96_RS15000;Name=ptrA;gbkey=Gene;gene=ptrA;gene_biotype=protein_coding;locus_tag=C9E96_RS15000;old_locus_tag=C9E96_15380
NZ_PYJX01000165.1	Protein Homology	CDS	7043	9931	.	+	0	ID=cds-WP_080219632.1;Parent=gene-C9E96_RS15000;Dbxref=GenBank:WP_080219632.1;Name=WP_080219632.1;Ontology_term=GO:0006508,GO:0004222,GO:0046872;gbkey=CDS;gene=ptrA;go_function=metalloendopeptidase activity|0004222||IEA,metal ion binding|0046872||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461912.1;locus_tag=C9E96_RS15000;product=pitrilysin;protein_id=WP_080219632.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	9924	13469	.	+	.	ID=gene-C9E96_RS15005;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=C9E96_RS15005;old_locus_tag=C9E96_15385
NZ_PYJX01000165.1	Protein Homology	CDS	9924	13469	.	+	0	ID=cds-WP_079943187.1;Parent=gene-C9E96_RS15005;Dbxref=GenBank:WP_079943187.1;Name=WP_079943187.1;Ontology_term=GO:0006281,GO:0003677,GO:0003678,GO:0005524,GO:0008854;gbkey=CDS;gene=recB;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461911.1;locus_tag=C9E96_RS15005;product=exodeoxyribonuclease V subunit beta;protein_id=WP_079943187.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	13466	15301	.	+	.	ID=gene-C9E96_RS15010;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=C9E96_RS15010;old_locus_tag=C9E96_15390
NZ_PYJX01000165.1	Protein Homology	CDS	13466	15301	.	+	0	ID=cds-WP_135494353.1;Parent=gene-C9E96_RS15010;Dbxref=GenBank:WP_135494353.1;Name=WP_135494353.1;Ontology_term=GO:0006302,GO:0006310,GO:0004386,GO:0008854,GO:0009338;gbkey=CDS;gene=recD;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=helicase activity|0004386||IEA,exodeoxyribonuclease V activity|0008854||IEA;go_process=double-strand break repair|0006302||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461910.1;locus_tag=C9E96_RS15010;product=exodeoxyribonuclease V subunit alpha;protein_id=WP_135494353.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	15404	16735	.	-	.	ID=gene-C9E96_RS15015;Name=argA;gbkey=Gene;gene=argA;gene_biotype=protein_coding;locus_tag=C9E96_RS15015;old_locus_tag=C9E96_15395
NZ_PYJX01000165.1	Protein Homology	CDS	15404	16735	.	-	0	ID=cds-WP_000588964.1;Parent=gene-C9E96_RS15015;Dbxref=GenBank:WP_000588964.1;Name=WP_000588964.1;Ontology_term=GO:0006526,GO:0004042;gbkey=CDS;gene=argA;go_function=L-glutamate N-acetyltransferase activity|0004042||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461909.1;locus_tag=C9E96_RS15015;product=amino-acid N-acetyltransferase;protein_id=WP_000588964.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	16968	18221	.	+	.	ID=gene-C9E96_RS15020;Name=amiC;gbkey=Gene;gene=amiC;gene_biotype=protein_coding;locus_tag=C9E96_RS15020;old_locus_tag=C9E96_15400
NZ_PYJX01000165.1	Protein Homology	CDS	16968	18221	.	+	0	ID=cds-WP_000011919.1;Parent=gene-C9E96_RS15020;Dbxref=GenBank:WP_000011919.1;Name=WP_000011919.1;Note=Like AmiA%2C dependent on TAT (Twin-Arginine Translocation) system for export.;gbkey=CDS;gene=amiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461908.1;locus_tag=C9E96_RS15020;product=N-acetylmuramoyl-L-alanine amidase AmiC;protein_id=WP_000011919.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	18331	18407	.	-	.	ID=gene-C9E96_RS15025;Name=C9E96_RS15025;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS15025;old_locus_tag=C9E96_15405
NZ_PYJX01000165.1	tRNAscan-SE	tRNA	18331	18407	.	-	.	ID=rna-C9E96_RS15025;Parent=gene-C9E96_RS15025;anticodon=(pos:complement(18371..18373));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS15025;product=tRNA-Met
NZ_PYJX01000165.1	tRNAscan-SE	exon	18331	18407	.	-	.	ID=exon-C9E96_RS15025-1;Parent=rna-C9E96_RS15025;anticodon=(pos:complement(18371..18373));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS15025;product=tRNA-Met
NZ_PYJX01000165.1	RefSeq	gene	18615	19712	.	+	.	ID=gene-C9E96_RS15030;Name=mltA;gbkey=Gene;gene=mltA;gene_biotype=protein_coding;locus_tag=C9E96_RS15030;old_locus_tag=C9E96_15410
NZ_PYJX01000165.1	Protein Homology	CDS	18615	19712	.	+	0	ID=cds-WP_000678626.1;Parent=gene-C9E96_RS15030;Dbxref=GenBank:WP_000678626.1;Name=WP_000678626.1;Ontology_term=GO:0009254,GO:0004553,GO:0019867;gbkey=CDS;gene=mltA;go_component=outer membrane|0019867||IEA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=peptidoglycan turnover|0009254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785702.1;locus_tag=C9E96_RS15030;product=murein transglycosylase A;protein_id=WP_000678626.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	19822	20628	.	+	.	ID=gene-C9E96_RS15035;Name=tcdA;gbkey=Gene;gene=tcdA;gene_biotype=protein_coding;locus_tag=C9E96_RS15035;old_locus_tag=C9E96_15415
NZ_PYJX01000165.1	Protein Homology	CDS	19822	20628	.	+	0	ID=cds-WP_000117750.1;Parent=gene-C9E96_RS15035;Dbxref=GenBank:WP_000117750.1;Name=WP_000117750.1;Ontology_term=GO:0008641;gbkey=CDS;gene=tcdA;go_function=ubiquitin-like modifier activating enzyme activity|0008641||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461906.1;locus_tag=C9E96_RS15035;product=tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA;protein_id=WP_000117750.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	20679	21566	.	-	.	ID=gene-C9E96_RS15040;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=C9E96_RS15040;old_locus_tag=C9E96_15420
NZ_PYJX01000165.1	Protein Homology	CDS	20679	21566	.	-	0	ID=cds-WP_077248417.1;Parent=gene-C9E96_RS15040;Dbxref=GenBank:WP_077248417.1;Name=WP_077248417.1;Ontology_term=GO:0006810,GO:0005215,GO:0005886;gbkey=CDS;gene=rarD;go_component=plasma membrane|0005886||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461905.3;locus_tag=C9E96_RS15040;product=EamA family transporter RarD;protein_id=WP_077248417.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	21866	22309	.	-	.	ID=gene-C9E96_RS15045;Name=csdE;gbkey=Gene;gene=csdE;gene_biotype=protein_coding;locus_tag=C9E96_RS15045;old_locus_tag=C9E96_15425
NZ_PYJX01000165.1	Protein Homology	CDS	21866	22309	.	-	0	ID=cds-WP_000184199.1;Parent=gene-C9E96_RS15045;Dbxref=GenBank:WP_000184199.1;Name=WP_000184199.1;gbkey=CDS;gene=csdE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000184199.1;locus_tag=C9E96_RS15045;product=cysteine desulfurase sulfur acceptor subunit CsdE;protein_id=WP_000184199.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	22309	23514	.	-	.	ID=gene-C9E96_RS15050;Name=csdA;gbkey=Gene;gene=csdA;gene_biotype=protein_coding;locus_tag=C9E96_RS15050;old_locus_tag=C9E96_15430
NZ_PYJX01000165.1	Protein Homology	CDS	22309	23514	.	-	0	ID=cds-WP_000991053.1;Parent=gene-C9E96_RS15050;Dbxref=GenBank:WP_000991053.1;Name=WP_000991053.1;Ontology_term=GO:0006534,GO:0016226,GO:0030170,GO:0031071;gbkey=CDS;gene=csdA;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=cysteine metabolic process|0006534||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461903.1;locus_tag=C9E96_RS15050;product=cysteine desulfurase CsdA;protein_id=WP_000991053.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	23707	23934	.	+	.	ID=gene-C9E96_RS15055;Name=C9E96_RS15055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15055;old_locus_tag=C9E96_15435
NZ_PYJX01000165.1	Protein Homology	CDS	23707	23934	.	+	0	ID=cds-WP_000750393.1;Parent=gene-C9E96_RS15055;Dbxref=GenBank:WP_000750393.1;Name=WP_000750393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461902.1;locus_tag=C9E96_RS15055;product=YgdI/YgdR family lipoprotein;protein_id=WP_000750393.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	pseudogene	24281	25198	.	+	.	ID=gene-C9E96_RS15060;Name=gcvA;gbkey=Gene;gene=gcvA;gene_biotype=pseudogene;locus_tag=C9E96_RS15060;old_locus_tag=C9E96_15440;pseudo=true
NZ_PYJX01000165.1	Protein Homology	CDS	24281	25198	.	+	0	ID=cds-C9E96_RS15060;Parent=gene-C9E96_RS15060;Note=internal stop;gbkey=CDS;gene=gcvA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130970.1;locus_tag=C9E96_RS15060;product=glycine cleavage system transcriptional regulator GcvA;pseudo=true;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	25217	25612	.	+	.	ID=gene-C9E96_RS15065;Name=C9E96_RS15065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15065;old_locus_tag=C9E96_15445
NZ_PYJX01000165.1	Protein Homology	CDS	25217	25612	.	+	0	ID=cds-WP_000203913.1;Parent=gene-C9E96_RS15065;Dbxref=GenBank:WP_000203913.1;Name=WP_000203913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461900.1;locus_tag=C9E96_RS15065;product=DUF423 domain-containing protein;protein_id=WP_000203913.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	25605	26705	.	+	.	ID=gene-C9E96_RS15070;Name=rlmM;gbkey=Gene;gene=rlmM;gene_biotype=protein_coding;locus_tag=C9E96_RS15070;old_locus_tag=C9E96_15450
NZ_PYJX01000165.1	Protein Homology	CDS	25605	26705	.	+	0	ID=cds-WP_001045499.1;Parent=gene-C9E96_RS15070;Dbxref=GenBank:WP_001045499.1;Name=WP_001045499.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmM;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010435097.1;locus_tag=C9E96_RS15070;product=23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM;protein_id=WP_001045499.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	26764	27474	.	-	.	ID=gene-C9E96_RS15075;Name=fucR;gbkey=Gene;gene=fucR;gene_biotype=protein_coding;locus_tag=C9E96_RS15075;old_locus_tag=C9E96_15455
NZ_PYJX01000165.1	Protein Homology	CDS	26764	27474	.	-	0	ID=cds-WP_000642330.1;Parent=gene-C9E96_RS15075;Dbxref=GenBank:WP_000642330.1;Name=WP_000642330.1;gbkey=CDS;gene=fucR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461898.1;locus_tag=C9E96_RS15075;product=L-fucose operon activator;protein_id=WP_000642330.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	27532	27954	.	-	.	ID=gene-C9E96_RS15080;Name=fucU;gbkey=Gene;gene=fucU;gene_biotype=protein_coding;locus_tag=C9E96_RS15080;old_locus_tag=C9E96_15460
NZ_PYJX01000165.1	Protein Homology	CDS	27532	27954	.	-	0	ID=cds-WP_000920848.1;Parent=gene-C9E96_RS15080;Dbxref=GenBank:WP_000920848.1;Name=WP_000920848.1;Ontology_term=GO:0042354,GO:0016854,GO:0042806;gbkey=CDS;gene=fucU;go_function=racemase and epimerase activity|0016854||IEA,fucose binding|0042806||IEA;go_process=L-fucose metabolic process|0042354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461897.1;locus_tag=C9E96_RS15080;product=L-fucose mutarotase;protein_id=WP_000920848.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	27956	29374	.	-	.	ID=gene-C9E96_RS15085;Name=fucK;gbkey=Gene;gene=fucK;gene_biotype=protein_coding;locus_tag=C9E96_RS15085;old_locus_tag=C9E96_15465
NZ_PYJX01000165.1	Protein Homology	CDS	27956	29374	.	-	0	ID=cds-WP_021294469.1;Parent=gene-C9E96_RS15085;Dbxref=GenBank:WP_021294469.1;Name=WP_021294469.1;Ontology_term=GO:0042355,GO:0008737;gbkey=CDS;gene=fucK;go_function=L-fuculokinase activity|0008737||IEA;go_process=L-fucose catabolic process|0042355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461896.1;locus_tag=C9E96_RS15085;product=L-fuculokinase;protein_id=WP_021294469.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	29475	31250	.	-	.	ID=gene-C9E96_RS15090;Name=fucI;gbkey=Gene;gene=fucI;gene_biotype=protein_coding;locus_tag=C9E96_RS15090;old_locus_tag=C9E96_15470
NZ_PYJX01000165.1	Protein Homology	CDS	29475	31250	.	-	0	ID=cds-WP_135494355.1;Parent=gene-C9E96_RS15090;Dbxref=GenBank:WP_135494355.1;Name=WP_135494355.1;Ontology_term=GO:0019317,GO:0008736,GO:0030145,GO:0005737;gbkey=CDS;gene=fucI;go_component=cytoplasm|0005737||IEA;go_function=L-fucose isomerase activity|0008736||IEA,manganese ion binding|0030145||IEA;go_process=fucose catabolic process|0019317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461895.1;locus_tag=C9E96_RS15090;product=L-fucose isomerase;protein_id=WP_135494355.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	31282	32604	.	-	.	ID=gene-C9E96_RS15095;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=C9E96_RS15095;old_locus_tag=C9E96_15475
NZ_PYJX01000165.1	Protein Homology	CDS	31282	32604	.	-	0	ID=cds-WP_080219558.1;Parent=gene-C9E96_RS15095;Dbxref=GenBank:WP_080219558.1;Name=WP_080219558.1;Ontology_term=GO:0015756,GO:0015150;gbkey=CDS;gene=fucP;go_function=fucose transmembrane transporter activity|0015150||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417281.1;locus_tag=C9E96_RS15095;product=L-fucose:H+ symporter permease;protein_id=WP_080219558.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	33161	33808	.	+	.	ID=gene-C9E96_RS15100;Name=fucA;gbkey=Gene;gene=fucA;gene_biotype=protein_coding;locus_tag=C9E96_RS15100;old_locus_tag=C9E96_15480
NZ_PYJX01000165.1	Protein Homology	CDS	33161	33808	.	+	0	ID=cds-WP_000440819.1;Parent=gene-C9E96_RS15100;Dbxref=GenBank:WP_000440819.1;Name=WP_000440819.1;Ontology_term=GO:0006004,GO:0008270,GO:0008738;gbkey=CDS;gene=fucA;go_function=zinc ion binding|0008270||IEA,L-fuculose-phosphate aldolase activity|0008738||IEA;go_process=fucose metabolic process|0006004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461894.1;locus_tag=C9E96_RS15100;product=L-fuculose-phosphate aldolase;protein_id=WP_000440819.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	pseudogene	33825	34973	.	+	.	ID=gene-C9E96_RS15105;Name=fucO;gbkey=Gene;gene=fucO;gene_biotype=pseudogene;locus_tag=C9E96_RS15105;old_locus_tag=C9E96_15485;pseudo=true
NZ_PYJX01000165.1	Protein Homology	CDS	33825	34973	.	+	0	ID=cds-C9E96_RS15105;Parent=gene-C9E96_RS15105;Note=internal stop;Ontology_term=GO:0016491;gbkey=CDS;gene=fucO;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461893.1;locus_tag=C9E96_RS15105;product=lactaldehyde reductase;pseudo=true;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	35065	35820	.	-	.	ID=gene-C9E96_RS15110;Name=xni;gbkey=Gene;gene=xni;gene_biotype=protein_coding;locus_tag=C9E96_RS15110;old_locus_tag=C9E96_15490
NZ_PYJX01000165.1	Protein Homology	CDS	35065	35820	.	-	0	ID=cds-WP_167852894.1;Parent=gene-C9E96_RS15110;Dbxref=GenBank:WP_167852894.1;Name=WP_167852894.1;Ontology_term=GO:0033567,GO:0003677,GO:0017108;gbkey=CDS;gene=xni;go_function=DNA binding|0003677||IEA,5'-flap endonuclease activity|0017108||IEA;go_process=DNA replication%2C Okazaki fragment processing|0033567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417278.4;locus_tag=C9E96_RS15110;product=flap endonuclease Xni;protein_id=WP_167852894.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	35990	37357	.	-	.	ID=gene-C9E96_RS15120;Name=sdaB;gbkey=Gene;gene=sdaB;gene_biotype=protein_coding;locus_tag=C9E96_RS15120;old_locus_tag=C9E96_15500
NZ_PYJX01000165.1	Protein Homology	CDS	35990	37357	.	-	0	ID=cds-WP_000626384.1;Parent=gene-C9E96_RS15120;Dbxref=GenBank:WP_000626384.1;Name=WP_000626384.1;gbkey=CDS;gene=sdaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461891.2;locus_tag=C9E96_RS15120;product=L-serine ammonia-lyase II;protein_id=WP_000626384.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	37416	38705	.	-	.	ID=gene-C9E96_RS15125;Name=sdaC;gbkey=Gene;gene=sdaC;gene_biotype=protein_coding;locus_tag=C9E96_RS15125;old_locus_tag=C9E96_15505
NZ_PYJX01000165.1	Protein Homology	CDS	37416	38705	.	-	0	ID=cds-WP_000450462.1;Parent=gene-C9E96_RS15125;Dbxref=GenBank:WP_000450462.1;Name=WP_000450462.1;gbkey=CDS;gene=sdaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461890.1;locus_tag=C9E96_RS15125;product=HAAAP family serine/threonine permease SdaC;protein_id=WP_000450462.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	39270	40634	.	-	.	ID=gene-C9E96_RS15130;Name=ppnN;gbkey=Gene;gene=ppnN;gene_biotype=protein_coding;locus_tag=C9E96_RS15130;old_locus_tag=C9E96_15510
NZ_PYJX01000165.1	Protein Homology	CDS	39270	40634	.	-	0	ID=cds-WP_000627973.1;Parent=gene-C9E96_RS15130;Dbxref=GenBank:WP_000627973.1;Name=WP_000627973.1;gbkey=CDS;gene=ppnN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461889.1;locus_tag=C9E96_RS15130;product=nucleotide 5'-monophosphate nucleosidase PpnN;protein_id=WP_000627973.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	40747	41595	.	-	.	ID=gene-C9E96_RS15135;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=C9E96_RS15135;old_locus_tag=C9E96_15515
NZ_PYJX01000165.1	Protein Homology	CDS	40747	41595	.	-	0	ID=cds-WP_023993971.1;Parent=gene-C9E96_RS15135;Dbxref=GenBank:WP_023993971.1;Name=WP_023993971.1;Note=Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;Ontology_term=GO:0008616,GO:0033739,GO:0043867;gbkey=CDS;gene=queF;go_function=preQ1 synthase activity|0033739||IEA,7-cyano-7-deazaguanine tRNA-ribosyltransferase activity|0043867||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461888.1;locus_tag=C9E96_RS15135;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=WP_023993971.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	41664	42209	.	+	.	ID=gene-C9E96_RS15140;Name=syd;gbkey=Gene;gene=syd;gene_biotype=protein_coding;locus_tag=C9E96_RS15140;old_locus_tag=C9E96_15520
NZ_PYJX01000165.1	Protein Homology	CDS	41664	42209	.	+	0	ID=cds-WP_000343990.1;Parent=gene-C9E96_RS15140;Dbxref=GenBank:WP_000343990.1;Name=WP_000343990.1;Ontology_term=GO:0009898;gbkey=CDS;gene=syd;go_component=cytoplasmic side of plasma membrane|0009898||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461887.1;locus_tag=C9E96_RS15140;product=SecY-interacting protein;protein_id=WP_000343990.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	42820	43149	.	+	.	ID=gene-C9E96_RS15150;Name=C9E96_RS15150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15150;old_locus_tag=C9E96_15530
NZ_PYJX01000165.1	Protein Homology	CDS	42820	43149	.	+	0	ID=cds-WP_001804977.1;Parent=gene-C9E96_RS15150;Dbxref=GenBank:WP_001804977.1;Name=WP_001804977.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461886.1;locus_tag=C9E96_RS15150;product=YqcC family protein;protein_id=WP_001804977.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	43149	43931	.	+	.	ID=gene-C9E96_RS15155;Name=truC;gbkey=Gene;gene=truC;gene_biotype=protein_coding;locus_tag=C9E96_RS15155;old_locus_tag=C9E96_15535
NZ_PYJX01000165.1	Protein Homology	CDS	43149	43931	.	+	0	ID=cds-WP_000890030.1;Parent=gene-C9E96_RS15155;Dbxref=GenBank:WP_000890030.1;Name=WP_000890030.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;gene=truC;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001715016.1;locus_tag=C9E96_RS15155;product=tRNA pseudouridine(65) synthase TruC;protein_id=WP_000890030.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	43950	44399	.	+	.	ID=gene-C9E96_RS15160;Name=C9E96_RS15160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15160;old_locus_tag=C9E96_15540
NZ_PYJX01000165.1	Protein Homology	CDS	43950	44399	.	+	0	ID=cds-WP_000807731.1;Parent=gene-C9E96_RS15160;Dbxref=GenBank:WP_000807731.1;Name=WP_000807731.1;Ontology_term=GO:0010181;gbkey=CDS;go_function=FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461884.1;locus_tag=C9E96_RS15160;product=flavodoxin;protein_id=WP_000807731.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	44549	44800	.	-	.	ID=gene-C9E96_RS15165;Name=C9E96_RS15165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15165;old_locus_tag=C9E96_15545
NZ_PYJX01000165.1	GeneMarkS-2+	CDS	44549	44800	.	-	0	ID=cds-WP_001540820.1;Parent=gene-C9E96_RS15165;Dbxref=GenBank:WP_001540820.1;Name=WP_001540820.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS15165;product=hypothetical protein;protein_id=WP_001540820.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	44880	46238	.	+	.	ID=gene-C9E96_RS15170;Name=gudP;gbkey=Gene;gene=gudP;gene_biotype=protein_coding;locus_tag=C9E96_RS15170;old_locus_tag=C9E96_15550
NZ_PYJX01000165.1	Protein Homology	CDS	44880	46238	.	+	0	ID=cds-WP_000097015.1;Parent=gene-C9E96_RS15170;Dbxref=GenBank:WP_000097015.1;Name=WP_000097015.1;gbkey=CDS;gene=gudP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461883.1;locus_tag=C9E96_RS15170;product=galactarate/glucarate/glycerate transporter GudP;protein_id=WP_000097015.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	46235	47575	.	+	.	ID=gene-C9E96_RS15175;Name=C9E96_RS15175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15175;old_locus_tag=C9E96_15555
NZ_PYJX01000165.1	Protein Homology	CDS	46235	47575	.	+	0	ID=cds-WP_000211797.1;Parent=gene-C9E96_RS15175;Dbxref=GenBank:WP_000211797.1;Name=WP_000211797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461882.1;locus_tag=C9E96_RS15175;product=enolase C-terminal domain-like protein;protein_id=WP_000211797.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	47596	48936	.	+	.	ID=gene-C9E96_RS15180;Name=gudD;gbkey=Gene;gene=gudD;gene_biotype=protein_coding;locus_tag=C9E96_RS15180;old_locus_tag=C9E96_15560
NZ_PYJX01000165.1	Protein Homology	CDS	47596	48936	.	+	0	ID=cds-WP_000107113.1;Parent=gene-C9E96_RS15180;Dbxref=GenBank:WP_000107113.1;Name=WP_000107113.1;Ontology_term=GO:0019394,GO:0000287,GO:0008872;gbkey=CDS;gene=gudD;go_function=magnesium ion binding|0000287||IEA,glucarate dehydratase activity|0008872||IEA;go_process=glucarate catabolic process|0019394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311674.1;locus_tag=C9E96_RS15180;product=glucarate dehydratase;protein_id=WP_000107113.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	49014	50156	.	+	.	ID=gene-C9E96_RS15185;Name=C9E96_RS15185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15185;old_locus_tag=C9E96_15565
NZ_PYJX01000165.1	Protein Homology	CDS	49014	50156	.	+	0	ID=cds-WP_000706479.1;Parent=gene-C9E96_RS15185;Dbxref=GenBank:WP_000706479.1;Name=WP_000706479.1;Ontology_term=GO:0005524,GO:0008887;gbkey=CDS;go_function=ATP binding|0005524||IEA,glycerate kinase activity|0008887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461880.1;locus_tag=C9E96_RS15185;product=glycerate kinase;protein_id=WP_000706479.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	50200	52956	.	-	.	ID=gene-C9E96_RS15190;Name=barA;gbkey=Gene;gene=barA;gene_biotype=protein_coding;locus_tag=C9E96_RS15190;old_locus_tag=C9E96_15570
NZ_PYJX01000165.1	Protein Homology	CDS	50200	52956	.	-	0	ID=cds-WP_000186400.1;Parent=gene-C9E96_RS15190;Dbxref=GenBank:WP_000186400.1;Name=WP_000186400.1;Ontology_term=GO:0000160,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=barA;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461879.1;locus_tag=C9E96_RS15190;product=two-component sensor histidine kinase BarA;protein_id=WP_000186400.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	53014	54309	.	+	.	ID=gene-C9E96_RS15195;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=protein_coding;locus_tag=C9E96_RS15195;old_locus_tag=C9E96_15575
NZ_PYJX01000165.1	Protein Homology	CDS	53014	54309	.	+	0	ID=cds-WP_000046853.1;Parent=gene-C9E96_RS15195;Dbxref=GenBank:WP_000046853.1;Name=WP_000046853.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmD;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461878.1;locus_tag=C9E96_RS15195;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_000046853.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	54361	56595	.	+	.	ID=gene-C9E96_RS15200;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;locus_tag=C9E96_RS15200;old_locus_tag=C9E96_15580
NZ_PYJX01000165.1	Protein Homology	CDS	54361	56595	.	+	0	ID=cds-WP_000226841.1;Parent=gene-C9E96_RS15200;Dbxref=GenBank:WP_000226841.1;Name=WP_000226841.1;Ontology_term=GO:0015969;gbkey=CDS;gene=relA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461877.1;locus_tag=C9E96_RS15200;product=GTP diphosphokinase;protein_id=WP_000226841.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	56679	57035	.	+	.	ID=gene-C9E96_RS15205;Name=C9E96_RS15205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15205;old_locus_tag=C9E96_15585
NZ_PYJX01000165.1	Protein Homology	CDS	56679	57035	.	+	0	ID=cds-WP_000480218.1;Parent=gene-C9E96_RS15205;Dbxref=GenBank:WP_000480218.1;Name=WP_000480218.1;Ontology_term=GO:0051983;gbkey=CDS;go_process=regulation of chromosome segregation|0051983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461876.3;locus_tag=C9E96_RS15205;product=type II toxin-antitoxin system ParD family antitoxin;protein_id=WP_000480218.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	57001	57297	.	+	.	ID=gene-C9E96_RS15210;Name=C9E96_RS15210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15210;old_locus_tag=C9E96_15590
NZ_PYJX01000165.1	Protein Homology	CDS	57001	57297	.	+	0	ID=cds-WP_023993973.1;Parent=gene-C9E96_RS15210;Dbxref=GenBank:WP_023993973.1;Name=WP_023993973.1;Ontology_term=GO:0090729,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=toxin activity|0090729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001532579.1;locus_tag=C9E96_RS15210;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_023993973.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	pseudogene	57316	57459	.	-	.	ID=gene-C9E96_RS24260;Name=C9E96_RS24260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24260;old_locus_tag=C9E96_15595;partial=true;pseudo=true;start_range=.,57316
NZ_PYJX01000165.1	Protein Homology	CDS	57316	57459	.	-	0	ID=cds-C9E96_RS24260;Parent=gene-C9E96_RS24260;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017466162.1;locus_tag=C9E96_RS24260;partial=true;product=fimbrial protein;pseudo=true;start_range=.,57316;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	58068	58868	.	+	.	ID=gene-C9E96_RS15220;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=C9E96_RS15220;old_locus_tag=C9E96_15600
NZ_PYJX01000165.1	Protein Homology	CDS	58068	58868	.	+	0	ID=cds-WP_000210451.1;Parent=gene-C9E96_RS15220;Dbxref=GenBank:WP_000210451.1;Name=WP_000210451.1;gbkey=CDS;gene=mazG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461875.1;locus_tag=C9E96_RS15220;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_000210451.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	59096	60733	.	+	.	ID=gene-C9E96_RS15225;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=C9E96_RS15225;old_locus_tag=C9E96_15605
NZ_PYJX01000165.1	Protein Homology	CDS	59096	60733	.	+	0	ID=cds-WP_000210863.1;Parent=gene-C9E96_RS15225;Dbxref=GenBank:WP_000210863.1;Name=WP_000210863.1;Ontology_term=GO:0006221,GO:0003883;gbkey=CDS;gene=pyrG;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130912.1;locus_tag=C9E96_RS15225;product=glutamine hydrolyzing CTP synthase;protein_id=WP_000210863.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	60816	62114	.	+	.	ID=gene-C9E96_RS15230;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=C9E96_RS15230;old_locus_tag=C9E96_15610
NZ_PYJX01000165.1	Protein Homology	CDS	60816	62114	.	+	0	ID=cds-WP_000036734.1;Parent=gene-C9E96_RS15230;Dbxref=GenBank:WP_000036734.1;Name=WP_000036734.1;Ontology_term=GO:0006096,GO:0000287,GO:0004634,GO:0000015;gbkey=CDS;gene=eno;go_component=phosphopyruvate hydratase complex|0000015||IEA;go_function=magnesium ion binding|0000287||IEA,phosphopyruvate hydratase activity|0004634||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456663.1;locus_tag=C9E96_RS15230;product=phosphopyruvate hydratase;protein_id=WP_000036734.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	62250	62921	.	+	.	ID=gene-C9E96_RS15235;Name=queE;gbkey=Gene;gene=queE;gene_biotype=protein_coding;locus_tag=C9E96_RS15235;old_locus_tag=C9E96_15615
NZ_PYJX01000165.1	Protein Homology	CDS	62250	62921	.	+	0	ID=cds-WP_001199961.1;Parent=gene-C9E96_RS15235;Dbxref=GenBank:WP_001199961.1;Name=WP_001199961.1;Ontology_term=GO:0006400,GO:0051539,GO:1904047;gbkey=CDS;gene=queE;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001199960.1;locus_tag=C9E96_RS15235;product=7-carboxy-7-deazaguanine synthase QueE;protein_id=WP_001199961.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	direct_repeat	63218	64223	.	+	.	ID=id-NZ_PYJX01000165.1:63218..64223;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=63218..63246;rpt_unit_seq=gtgttccccgcgccagcggggataaaccg
NZ_PYJX01000165.1	RefSeq	gene	64382	65179	.	+	.	ID=gene-C9E96_RS15240;Name=C9E96_RS15240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15240;old_locus_tag=C9E96_15620
NZ_PYJX01000165.1	Protein Homology	CDS	64382	65179	.	+	0	ID=cds-WP_080203813.1;Parent=gene-C9E96_RS15240;Dbxref=GenBank:WP_080203813.1;Name=WP_080203813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461871.1;locus_tag=C9E96_RS15240;product=MBL fold metallo-hydrolase;protein_id=WP_080203813.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	65267	65629	.	-	.	ID=gene-C9E96_RS15245;Name=queD;gbkey=Gene;gene=queD;gene_biotype=protein_coding;locus_tag=C9E96_RS15245;old_locus_tag=C9E96_15625
NZ_PYJX01000165.1	Protein Homology	CDS	65267	65629	.	-	0	ID=cds-WP_000108313.1;Parent=gene-C9E96_RS15245;Dbxref=GenBank:WP_000108313.1;Name=WP_000108313.1;Ontology_term=GO:0008616,GO:0003824;gbkey=CDS;gene=queD;go_function=catalytic activity|0003824||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461870.1;locus_tag=C9E96_RS15245;product=6-carboxytetrahydropterin synthase QueD;protein_id=WP_000108313.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	66053	67852	.	+	.	ID=gene-C9E96_RS15255;Name=cysJ;gbkey=Gene;gene=cysJ;gene_biotype=protein_coding;locus_tag=C9E96_RS15255;old_locus_tag=C9E96_15635
NZ_PYJX01000165.1	Protein Homology	CDS	66053	67852	.	+	0	ID=cds-WP_135494359.1;Parent=gene-C9E96_RS15255;Dbxref=GenBank:WP_135494359.1;Name=WP_135494359.1;Ontology_term=GO:0000103,GO:0019344,GO:0004783,GO:0010181,GO:0050660;gbkey=CDS;gene=cysJ;go_function=sulfite reductase (NADPH) activity|0004783||IEA,FMN binding|0010181||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=sulfate assimilation|0000103||IEA,cysteine biosynthetic process|0019344||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461869.1;locus_tag=C9E96_RS15255;product=NADPH-dependent assimilatory sulfite reductase flavoprotein subunit;protein_id=WP_135494359.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	67852	69564	.	+	.	ID=gene-C9E96_RS15260;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=C9E96_RS15260;old_locus_tag=C9E96_15640
NZ_PYJX01000165.1	Protein Homology	CDS	67852	69564	.	+	0	ID=cds-WP_023993661.1;Parent=gene-C9E96_RS15260;Dbxref=GenBank:WP_023993661.1;Name=WP_023993661.1;Ontology_term=GO:0000103,GO:0008652,GO:0004783,GO:0050661,GO:0051539,GO:0009337;gbkey=CDS;gene=cysI;go_component=sulfite reductase complex (NADPH)|0009337||IEA;go_function=sulfite reductase (NADPH) activity|0004783||IEA,NADP binding|0050661||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=sulfate assimilation|0000103||IEA,amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001290736.1;locus_tag=C9E96_RS15260;product=assimilatory sulfite reductase (NADPH) hemoprotein subunit;protein_id=WP_023993661.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	69666	70400	.	+	.	ID=gene-C9E96_RS15270;Name=cysH;gbkey=Gene;gene=cysH;gene_biotype=protein_coding;locus_tag=C9E96_RS15270;old_locus_tag=C9E96_15650
NZ_PYJX01000165.1	Protein Homology	CDS	69666	70400	.	+	0	ID=cds-WP_000039870.1;Parent=gene-C9E96_RS15270;Dbxref=GenBank:WP_000039870.1;Name=WP_000039870.1;Ontology_term=GO:0019379,GO:0004604;gbkey=CDS;gene=cysH;go_function=phosphoadenylyl-sulfate reductase (thioredoxin) activity|0004604||IEA;go_process=sulfate assimilation%2C phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)|0019379||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461867.1;locus_tag=C9E96_RS15270;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_000039870.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	70613	71566	.	-	.	ID=gene-C9E96_RS15275;Name=sopD;gbkey=Gene;gene=sopD;gene_biotype=protein_coding;locus_tag=C9E96_RS15275;old_locus_tag=C9E96_15660
NZ_PYJX01000165.1	Protein Homology	CDS	70613	71566	.	-	0	ID=cds-WP_080081587.1;Parent=gene-C9E96_RS15275;Dbxref=GenBank:WP_080081587.1;Name=WP_080081587.1;gbkey=CDS;gene=sopD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441126.1;locus_tag=C9E96_RS15275;product=SPI-1 type III secretion system effector SopD;protein_id=WP_080081587.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	72010	74673	.	+	.	ID=gene-C9E96_RS15285;Name=cas3;gbkey=Gene;gene=cas3;gene_biotype=protein_coding;locus_tag=C9E96_RS15285;old_locus_tag=C9E96_15670
NZ_PYJX01000165.1	Protein Homology	CDS	72010	74673	.	+	0	ID=cds-WP_135494361.1;Parent=gene-C9E96_RS15285;Dbxref=GenBank:WP_135494361.1;Name=WP_135494361.1;Ontology_term=GO:0043571,GO:0004386;gbkey=CDS;gene=cas3;go_function=helicase activity|0004386||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461865.1;locus_tag=C9E96_RS15285;product=CRISPR-associated helicase Cas3';protein_id=WP_135494361.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	74685	76241	.	+	.	ID=gene-C9E96_RS15290;Name=casA;gbkey=Gene;gene=casA;gene_biotype=protein_coding;gene_synonym=cse1;locus_tag=C9E96_RS15290;old_locus_tag=C9E96_15675
NZ_PYJX01000165.1	Protein Homology	CDS	74685	76241	.	+	0	ID=cds-WP_000368584.1;Parent=gene-C9E96_RS15290;Dbxref=GenBank:WP_000368584.1;Name=WP_000368584.1;Ontology_term=GO:0043571;gbkey=CDS;gene=casA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461864.1;locus_tag=C9E96_RS15290;product=type I-E CRISPR-associated protein Cse1/CasA;protein_id=WP_000368584.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	76238	76798	.	+	.	ID=gene-C9E96_RS15295;Name=casB;gbkey=Gene;gene=casB;gene_biotype=protein_coding;gene_synonym=cse2;locus_tag=C9E96_RS15295;old_locus_tag=C9E96_15680
NZ_PYJX01000165.1	Protein Homology	CDS	76238	76798	.	+	0	ID=cds-WP_000117946.1;Parent=gene-C9E96_RS15295;Dbxref=GenBank:WP_000117946.1;Name=WP_000117946.1;Ontology_term=GO:0043571;gbkey=CDS;gene=casB;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461863.1;locus_tag=C9E96_RS15295;product=type I-E CRISPR-associated protein Cse2/CasB;protein_id=WP_000117946.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	76812	77870	.	+	.	ID=gene-C9E96_RS15300;Name=cas7e;gbkey=Gene;gene=cas7e;gene_biotype=protein_coding;locus_tag=C9E96_RS15300;old_locus_tag=C9E96_15685
NZ_PYJX01000165.1	Protein Homology	CDS	76812	77870	.	+	0	ID=cds-WP_023993664.1;Parent=gene-C9E96_RS15300;Dbxref=GenBank:WP_023993664.1;Name=WP_023993664.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas7e;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461862.1;locus_tag=C9E96_RS15300;product=type I-E CRISPR-associated protein Cas7/Cse4/CasC;protein_id=WP_023993664.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	77881	78627	.	+	.	ID=gene-C9E96_RS15305;Name=cas5e;gbkey=Gene;gene=cas5e;gene_biotype=protein_coding;locus_tag=C9E96_RS15305;old_locus_tag=C9E96_15690
NZ_PYJX01000165.1	Protein Homology	CDS	77881	78627	.	+	0	ID=cds-WP_000085112.1;Parent=gene-C9E96_RS15305;Dbxref=GenBank:WP_000085112.1;Name=WP_000085112.1;Ontology_term=GO:0043571,GO:0051607,GO:0003723;gbkey=CDS;gene=cas5e;go_function=RNA binding|0003723||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461861.1;locus_tag=C9E96_RS15305;product=type I-E CRISPR-associated protein Cas5/CasD;protein_id=WP_000085112.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	78609	79259	.	+	.	ID=gene-C9E96_RS15310;Name=cas6e;gbkey=Gene;gene=cas6e;gene_biotype=protein_coding;locus_tag=C9E96_RS15310;old_locus_tag=C9E96_15695
NZ_PYJX01000165.1	Protein Homology	CDS	78609	79259	.	+	0	ID=cds-WP_023993666.1;Parent=gene-C9E96_RS15310;Dbxref=GenBank:WP_023993666.1;Name=WP_023993666.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas6e;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461860.1;locus_tag=C9E96_RS15310;product=type I-E CRISPR-associated protein Cas6/Cse3/CasE;protein_id=WP_023993666.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	79256	80176	.	+	.	ID=gene-C9E96_RS15315;Name=cas1e;gbkey=Gene;gene=cas1e;gene_biotype=protein_coding;locus_tag=C9E96_RS15315;old_locus_tag=C9E96_15700
NZ_PYJX01000165.1	Protein Homology	CDS	79256	80176	.	+	0	ID=cds-WP_000144837.1;Parent=gene-C9E96_RS15315;Dbxref=GenBank:WP_000144837.1;Name=WP_000144837.1;Ontology_term=GO:0043571,GO:0051607,GO:0003676,GO:0004520,GO:0046872;gbkey=CDS;gene=cas1e;go_function=nucleic acid binding|0003676||IEA,DNA endonuclease activity|0004520||IEA,metal ion binding|0046872||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461859.1;locus_tag=C9E96_RS15315;product=type I-E CRISPR-associated endonuclease Cas1e;protein_id=WP_000144837.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	80176	80469	.	+	.	ID=gene-C9E96_RS15320;Name=cas2e;gbkey=Gene;gene=cas2e;gene_biotype=protein_coding;locus_tag=C9E96_RS15320;old_locus_tag=C9E96_15705
NZ_PYJX01000165.1	Protein Homology	CDS	80176	80469	.	+	0	ID=cds-WP_001518648.1;Parent=gene-C9E96_RS15320;Dbxref=GenBank:WP_001518648.1;Name=WP_001518648.1;Ontology_term=GO:0043571,GO:0004521;gbkey=CDS;gene=cas2e;go_function=RNA endonuclease activity|0004521||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311635.1;locus_tag=C9E96_RS15320;product=type I-E CRISPR-associated endoribonuclease Cas2e;protein_id=WP_001518648.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	direct_repeat	80566	82648	.	+	.	ID=id-NZ_PYJX01000165.1:80566..82648;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=80566..80594;rpt_unit_seq=gtgttccccgcgccagcggggataaaccg
NZ_PYJX01000165.1	RefSeq	gene	82663	83709	.	-	.	ID=gene-C9E96_RS15325;Name=C9E96_RS15325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15325;old_locus_tag=C9E96_15710
NZ_PYJX01000165.1	Protein Homology	CDS	82663	83709	.	-	0	ID=cds-WP_000490481.1;Parent=gene-C9E96_RS15325;Dbxref=GenBank:WP_000490481.1;Name=WP_000490481.1;Ontology_term=GO:0008235;gbkey=CDS;go_function=metalloexopeptidase activity|0008235||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461857.1;locus_tag=C9E96_RS15325;product=aminopeptidase;protein_id=WP_000490481.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	83960	84868	.	+	.	ID=gene-C9E96_RS15330;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=C9E96_RS15330;old_locus_tag=C9E96_15715
NZ_PYJX01000165.1	Protein Homology	CDS	83960	84868	.	+	0	ID=cds-WP_000372384.1;Parent=gene-C9E96_RS15330;Dbxref=GenBank:WP_000372384.1;Name=WP_000372384.1;Ontology_term=GO:0000103,GO:0004781;gbkey=CDS;gene=cysD;go_function=sulfate adenylyltransferase (ATP) activity|0004781||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130891.1;locus_tag=C9E96_RS15330;product=sulfate adenylyltransferase subunit CysD;protein_id=WP_000372384.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	84878	86317	.	+	.	ID=gene-C9E96_RS15335;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=C9E96_RS15335;old_locus_tag=C9E96_15720
NZ_PYJX01000165.1	Protein Homology	CDS	84878	86317	.	+	0	ID=cds-WP_023993669.1;Parent=gene-C9E96_RS15335;Dbxref=GenBank:WP_023993669.1;Name=WP_023993669.1;Ontology_term=GO:0006790,GO:0003924,GO:0005525;gbkey=CDS;gene=cysN;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461855.1;locus_tag=C9E96_RS15335;product=sulfate adenylyltransferase subunit CysN;protein_id=WP_023993669.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	86304	86909	.	+	.	ID=gene-C9E96_RS15340;Name=cysC;gbkey=Gene;gene=cysC;gene_biotype=protein_coding;locus_tag=C9E96_RS15340;old_locus_tag=C9E96_15725
NZ_PYJX01000165.1	Protein Homology	CDS	86304	86909	.	+	0	ID=cds-WP_001173659.1;Parent=gene-C9E96_RS15340;Dbxref=GenBank:WP_001173659.1;Name=WP_001173659.1;Ontology_term=GO:0000103,GO:0004020,GO:0005524;gbkey=CDS;gene=cysC;go_function=adenylylsulfate kinase activity|0004020||IEA,ATP binding|0005524||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461854.1;locus_tag=C9E96_RS15340;product=adenylyl-sulfate kinase;protein_id=WP_001173659.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	86960	87283	.	+	.	ID=gene-C9E96_RS15345;Name=C9E96_RS15345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15345;old_locus_tag=C9E96_15730
NZ_PYJX01000165.1	Protein Homology	CDS	86960	87283	.	+	0	ID=cds-WP_023993670.1;Parent=gene-C9E96_RS15345;Dbxref=GenBank:WP_023993670.1;Name=WP_023993670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011233164.1;locus_tag=C9E96_RS15345;product=DUF3561 family protein;protein_id=WP_023993670.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	87474	87785	.	+	.	ID=gene-C9E96_RS15350;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=C9E96_RS15350;old_locus_tag=C9E96_15735
NZ_PYJX01000165.1	Protein Homology	CDS	87474	87785	.	+	0	ID=cds-WP_000517480.1;Parent=gene-C9E96_RS15350;Dbxref=GenBank:WP_000517480.1;Name=WP_000517480.1;gbkey=CDS;gene=ftsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461852.1;locus_tag=C9E96_RS15350;product=cell division protein FtsB;protein_id=WP_000517480.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	87804	88514	.	+	.	ID=gene-C9E96_RS15355;Name=ispD;gbkey=Gene;gene=ispD;gene_biotype=protein_coding;locus_tag=C9E96_RS15355;old_locus_tag=C9E96_15740
NZ_PYJX01000165.1	Protein Homology	CDS	87804	88514	.	+	0	ID=cds-WP_000741652.1;Parent=gene-C9E96_RS15355;Dbxref=GenBank:WP_000741652.1;Name=WP_000741652.1;Ontology_term=GO:0008299,GO:0019288,GO:0050518;gbkey=CDS;gene=ispD;go_function=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|0050518||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA,isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461851.1;locus_tag=C9E96_RS15355;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_000741652.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	88514	88993	.	+	.	ID=gene-C9E96_RS15360;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=C9E96_RS15360;old_locus_tag=C9E96_15745
NZ_PYJX01000165.1	Protein Homology	CDS	88514	88993	.	+	0	ID=cds-WP_001219244.1;Parent=gene-C9E96_RS15360;Dbxref=GenBank:WP_001219244.1;Name=WP_001219244.1;Ontology_term=GO:0019288,GO:0008685;gbkey=CDS;gene=ispF;go_function=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity|0008685||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461850.1;locus_tag=C9E96_RS15360;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_001219244.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	88990	90039	.	+	.	ID=gene-C9E96_RS15365;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;locus_tag=C9E96_RS15365;old_locus_tag=C9E96_15750
NZ_PYJX01000165.1	Protein Homology	CDS	88990	90039	.	+	0	ID=cds-WP_000134246.1;Parent=gene-C9E96_RS15365;Dbxref=GenBank:WP_000134246.1;Name=WP_000134246.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=truD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461849.1;locus_tag=C9E96_RS15365;product=tRNA pseudouridine(13) synthase TruD;protein_id=WP_000134246.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	90020	90781	.	+	.	ID=gene-C9E96_RS15370;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=C9E96_RS15370;old_locus_tag=C9E96_15755
NZ_PYJX01000165.1	Protein Homology	CDS	90020	90781	.	+	0	ID=cds-WP_001221537.1;Parent=gene-C9E96_RS15370;Dbxref=GenBank:WP_001221537.1;Name=WP_001221537.1;Ontology_term=GO:0008252;gbkey=CDS;gene=surE;go_function=nucleotidase activity|0008252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461848.1;locus_tag=C9E96_RS15370;product=5'/3'-nucleotidase SurE;protein_id=WP_001221537.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	90775	91401	.	+	.	ID=gene-C9E96_RS15375;Name=C9E96_RS15375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15375;old_locus_tag=C9E96_15760
NZ_PYJX01000165.1	Protein Homology	CDS	90775	91401	.	+	0	ID=cds-WP_000253545.1;Parent=gene-C9E96_RS15375;Dbxref=GenBank:WP_000253545.1;Name=WP_000253545.1;Ontology_term=GO:0036211,GO:0004719;gbkey=CDS;go_function=protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|0004719||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130872.1;locus_tag=C9E96_RS15375;product=protein-L-isoaspartate(D-aspartate) O-methyltransferase;protein_id=WP_000253545.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	91540	91698	.	-	.	ID=gene-C9E96_RS24265;Name=C9E96_RS24265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24265
NZ_PYJX01000165.1	Protein Homology	CDS	91540	91698	.	-	0	ID=cds-WP_223148970.1;Parent=gene-C9E96_RS24265;Dbxref=GenBank:WP_223148970.1;Name=WP_223148970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001541719.1;locus_tag=C9E96_RS24265;product=peptidase;protein_id=WP_223148970.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	91628	92698	.	+	.	ID=gene-C9E96_RS15380;Name=nlpD;gbkey=Gene;gene=nlpD;gene_biotype=protein_coding;locus_tag=C9E96_RS15380;old_locus_tag=C9E96_15765
NZ_PYJX01000165.1	Protein Homology	CDS	91628	92698	.	+	0	ID=cds-WP_223151137.1;Parent=gene-C9E96_RS15380;Dbxref=GenBank:WP_223151137.1;Name=WP_223151137.1;gbkey=CDS;gene=nlpD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461846.1;locus_tag=C9E96_RS15380;product=murein hydrolase activator NlpD;protein_id=WP_223151137.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	92761	93753	.	+	.	ID=gene-C9E96_RS15385;Name=rpoS;gbkey=Gene;gene=rpoS;gene_biotype=protein_coding;locus_tag=C9E96_RS15385;old_locus_tag=C9E96_15770
NZ_PYJX01000165.1	Protein Homology	CDS	92761	93753	.	+	0	ID=cds-WP_000081498.1;Parent=gene-C9E96_RS15385;Dbxref=GenBank:WP_000081498.1;Name=WP_000081498.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000081498.1;locus_tag=C9E96_RS15385;product=RNA polymerase sigma factor RpoS;protein_id=WP_000081498.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	93798	94034	.	-	.	ID=gene-C9E96_RS15390;Name=C9E96_RS15390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15390;old_locus_tag=C9E96_15775
NZ_PYJX01000165.1	Protein Homology	CDS	93798	94034	.	-	0	ID=cds-WP_000562964.1;Parent=gene-C9E96_RS15390;Dbxref=GenBank:WP_000562964.1;Name=WP_000562964.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461844.1;locus_tag=C9E96_RS15390;product=non-oxidative hydroxyarylic acid decarboxylases subunit D;protein_id=WP_000562964.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	94045	95472	.	-	.	ID=gene-C9E96_RS15395;Name=C9E96_RS15395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15395;old_locus_tag=C9E96_15780
NZ_PYJX01000165.1	Protein Homology	CDS	94045	95472	.	-	0	ID=cds-WP_000863168.1;Parent=gene-C9E96_RS15395;Dbxref=GenBank:WP_000863168.1;Name=WP_000863168.1;Ontology_term=GO:0016831;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461843.1;locus_tag=C9E96_RS15395;product=non-oxidative hydroxyarylic acid decarboxylases subunit C;protein_id=WP_000863168.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	95472	96065	.	-	.	ID=gene-C9E96_RS15400;Name=C9E96_RS15400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15400;old_locus_tag=C9E96_15785
NZ_PYJX01000165.1	Protein Homology	CDS	95472	96065	.	-	0	ID=cds-WP_001237180.1;Parent=gene-C9E96_RS15400;Dbxref=GenBank:WP_001237180.1;Name=WP_001237180.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461842.1;locus_tag=C9E96_RS15400;product=non-oxidative hydroxyarylic acid decarboxylases subunit B;protein_id=WP_001237180.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	96236	96640	.	+	.	ID=gene-C9E96_RS15405;Name=C9E96_RS15405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15405;old_locus_tag=C9E96_15790
NZ_PYJX01000165.1	Protein Homology	CDS	96236	96640	.	+	0	ID=cds-WP_000423338.1;Parent=gene-C9E96_RS15405;Dbxref=GenBank:WP_000423338.1;Name=WP_000423338.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461841.1;locus_tag=C9E96_RS15405;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_000423338.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	96659	97423	.	-	.	ID=gene-C9E96_RS15410;Name=ygbI;gbkey=Gene;gene=ygbI;gene_biotype=protein_coding;locus_tag=C9E96_RS15410;old_locus_tag=C9E96_15795
NZ_PYJX01000165.1	Protein Homology	CDS	96659	97423	.	-	0	ID=cds-WP_000613184.1;Parent=gene-C9E96_RS15410;Dbxref=GenBank:WP_000613184.1;Name=WP_000613184.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ygbI;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461840.1;locus_tag=C9E96_RS15410;product=DNA-binding transcriptional repressor YgbI;protein_id=WP_000613184.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	97620	98543	.	+	.	ID=gene-C9E96_RS15415;Name=ltnD;gbkey=Gene;gene=ltnD;gene_biotype=protein_coding;locus_tag=C9E96_RS15415;old_locus_tag=C9E96_15800
NZ_PYJX01000165.1	Protein Homology	CDS	97620	98543	.	+	0	ID=cds-WP_000206951.1;Parent=gene-C9E96_RS15415;Dbxref=GenBank:WP_000206951.1;Name=WP_000206951.1;Ontology_term=GO:0005975,GO:0016616;gbkey=CDS;gene=ltnD;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461839.1;locus_tag=C9E96_RS15415;product=L-threonate dehydrogenase;protein_id=WP_000206951.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	98537	99799	.	+	.	ID=gene-C9E96_RS15420;Name=otnK;gbkey=Gene;gene=otnK;gene_biotype=protein_coding;locus_tag=C9E96_RS15420;old_locus_tag=C9E96_15805
NZ_PYJX01000165.1	Protein Homology	CDS	98537	99799	.	+	0	ID=cds-WP_000912500.1;Parent=gene-C9E96_RS15420;Dbxref=GenBank:WP_000912500.1;Name=WP_000912500.1;Ontology_term=GO:0005975,GO:0005524,GO:0016301;gbkey=CDS;gene=otnK;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461838.1;locus_tag=C9E96_RS15420;product=3-oxo-tetronate kinase;protein_id=WP_000912500.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	99796	100434	.	+	.	ID=gene-C9E96_RS15425;Name=C9E96_RS15425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15425;old_locus_tag=C9E96_15810
NZ_PYJX01000165.1	Protein Homology	CDS	99796	100434	.	+	0	ID=cds-WP_000153636.1;Parent=gene-C9E96_RS15425;Dbxref=GenBank:WP_000153636.1;Name=WP_000153636.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461837.1;locus_tag=C9E96_RS15425;product=aldolase;protein_id=WP_000153636.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	100439	101215	.	+	.	ID=gene-C9E96_RS15430;Name=C9E96_RS15430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15430;old_locus_tag=C9E96_15815
NZ_PYJX01000165.1	Protein Homology	CDS	100439	101215	.	+	0	ID=cds-WP_001136887.1;Parent=gene-C9E96_RS15430;Dbxref=GenBank:WP_001136887.1;Name=WP_001136887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461836.1;locus_tag=C9E96_RS15430;product=HPr family phosphocarrier protein;protein_id=WP_001136887.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	101255	102205	.	+	.	ID=gene-C9E96_RS15435;Name=denD;gbkey=Gene;gene=denD;gene_biotype=protein_coding;locus_tag=C9E96_RS15435;old_locus_tag=C9E96_15820
NZ_PYJX01000165.1	Protein Homology	CDS	101255	102205	.	+	0	ID=cds-WP_001165731.1;Parent=gene-C9E96_RS15435;Dbxref=GenBank:WP_001165731.1;Name=WP_001165731.1;Ontology_term=GO:0005975,GO:0016491;gbkey=CDS;gene=denD;go_function=oxidoreductase activity|0016491||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461835.1;locus_tag=C9E96_RS15435;product=D-erythronate dehydrogenase;protein_id=WP_001165731.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	102202	103698	.	+	.	ID=gene-C9E96_RS15440;Name=C9E96_RS15440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15440;old_locus_tag=C9E96_15825
NZ_PYJX01000165.1	Protein Homology	CDS	102202	103698	.	+	0	ID=cds-WP_000202725.1;Parent=gene-C9E96_RS15440;Dbxref=GenBank:WP_000202725.1;Name=WP_000202725.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461834.1;locus_tag=C9E96_RS15440;product=GntP family permease;protein_id=WP_000202725.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	103740	104672	.	-	.	ID=gene-C9E96_RS15445;Name=C9E96_RS15445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15445;old_locus_tag=C9E96_15830
NZ_PYJX01000165.1	Protein Homology	CDS	103740	104672	.	-	0	ID=cds-WP_000216297.1;Parent=gene-C9E96_RS15445;Dbxref=GenBank:WP_000216297.1;Name=WP_000216297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461833.1;locus_tag=C9E96_RS15445;product=LysR family transcriptional regulator;protein_id=WP_000216297.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	104760	105968	.	+	.	ID=gene-C9E96_RS15450;Name=C9E96_RS15450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15450;old_locus_tag=C9E96_15835
NZ_PYJX01000165.1	Protein Homology	CDS	104760	105968	.	+	0	ID=cds-WP_000222406.1;Parent=gene-C9E96_RS15450;Dbxref=GenBank:WP_000222406.1;Name=WP_000222406.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461832.1;locus_tag=C9E96_RS15450;product=MFS transporter;protein_id=WP_000222406.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	105965	106345	.	+	.	ID=gene-C9E96_RS15455;Name=C9E96_RS15455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15455;old_locus_tag=C9E96_15840
NZ_PYJX01000165.1	Protein Homology	CDS	105965	106345	.	+	0	ID=cds-WP_001070479.1;Parent=gene-C9E96_RS15455;Dbxref=GenBank:WP_001070479.1;Name=WP_001070479.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461831.1;locus_tag=C9E96_RS15455;product=DUF4440 domain-containing protein;protein_id=WP_001070479.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	106401	108968	.	-	.	ID=gene-C9E96_RS15460;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=C9E96_RS15460;old_locus_tag=C9E96_15845
NZ_PYJX01000165.1	Protein Homology	CDS	106401	108968	.	-	0	ID=cds-WP_001005807.1;Parent=gene-C9E96_RS15460;Dbxref=GenBank:WP_001005807.1;Name=WP_001005807.1;Ontology_term=GO:0006298,GO:0005524,GO:0030983;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461830.1;locus_tag=C9E96_RS15460;product=DNA mismatch repair protein MutS;protein_id=WP_001005807.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	109127	109648	.	+	.	ID=gene-C9E96_RS15465;Name=C9E96_RS15465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15465;old_locus_tag=C9E96_15850
NZ_PYJX01000165.1	Protein Homology	CDS	109127	109648	.	+	0	ID=cds-WP_000858988.1;Parent=gene-C9E96_RS15465;Dbxref=GenBank:WP_000858988.1;Name=WP_000858988.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461829.1;locus_tag=C9E96_RS15465;product=hypothetical protein;protein_id=WP_000858988.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	109820	110476	.	-	.	ID=gene-C9E96_RS15470;Name=pphB;gbkey=Gene;gene=pphB;gene_biotype=protein_coding;locus_tag=C9E96_RS15470;old_locus_tag=C9E96_15855
NZ_PYJX01000165.1	Protein Homology	CDS	109820	110476	.	-	0	ID=cds-WP_000420452.1;Parent=gene-C9E96_RS15470;Dbxref=GenBank:WP_000420452.1;Name=WP_000420452.1;gbkey=CDS;gene=pphB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461828.1;locus_tag=C9E96_RS15470;product=protein-serine/threonine phosphatase;protein_id=WP_000420452.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	pseudogene	110814	111028	.	+	.	ID=gene-C9E96_RS15475;Name=C9E96_RS15475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS15475;old_locus_tag=C9E96_15860;partial=true;pseudo=true;start_range=.,110814
NZ_PYJX01000165.1	Protein Homology	CDS	110814	111028	.	+	0	ID=cds-C9E96_RS15475;Parent=gene-C9E96_RS15475;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011791210.1;locus_tag=C9E96_RS15475;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,110814;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	111101	111628	.	-	.	ID=gene-C9E96_RS15480;Name=C9E96_RS15480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15480;old_locus_tag=C9E96_15865
NZ_PYJX01000165.1	Protein Homology	CDS	111101	111628	.	-	0	ID=cds-WP_000971649.1;Parent=gene-C9E96_RS15480;Dbxref=GenBank:WP_000971649.1;Name=WP_000971649.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461826.1;locus_tag=C9E96_RS15480;product=GNAT family N-acetyltransferase;protein_id=WP_000971649.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	111625	111915	.	-	.	ID=gene-C9E96_RS15485;Name=C9E96_RS15485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15485;old_locus_tag=C9E96_15870
NZ_PYJX01000165.1	Protein Homology	CDS	111625	111915	.	-	0	ID=cds-WP_000855694.1;Parent=gene-C9E96_RS15485;Dbxref=GenBank:WP_000855694.1;Name=WP_000855694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461825.1;locus_tag=C9E96_RS15485;product=DUF1778 domain-containing protein;protein_id=WP_000855694.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	pseudogene	112185	112363	.	-	.	ID=gene-C9E96_RS15490;Name=C9E96_RS15490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS15490;old_locus_tag=C9E96_15875;partial=true;pseudo=true;start_range=.,112185
NZ_PYJX01000165.1	Protein Homology	CDS	112185	112363	.	-	0	ID=cds-C9E96_RS15490;Parent=gene-C9E96_RS15490;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612101.1;locus_tag=C9E96_RS15490;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,112185;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	112604	112930	.	+	.	ID=gene-C9E96_RS15495;Name=C9E96_RS15495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15495;old_locus_tag=C9E96_15880
NZ_PYJX01000165.1	Protein Homology	CDS	112604	112930	.	+	0	ID=cds-WP_000393300.1;Parent=gene-C9E96_RS15495;Dbxref=GenBank:WP_000393300.1;Name=WP_000393300.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461824.1;locus_tag=C9E96_RS15495;product=hypothetical protein;protein_id=WP_000393300.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	113203	113550	.	-	.	ID=gene-C9E96_RS15500;Name=C9E96_RS15500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15500;old_locus_tag=C9E96_15885
NZ_PYJX01000165.1	Protein Homology	CDS	113203	113550	.	-	0	ID=cds-WP_001669174.1;Parent=gene-C9E96_RS15500;Dbxref=GenBank:WP_001669174.1;Name=WP_001669174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461823.1;locus_tag=C9E96_RS15500;product=DUF1493 family protein;protein_id=WP_001669174.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	113535	113984	.	-	.	ID=gene-C9E96_RS15505;Name=C9E96_RS15505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15505;old_locus_tag=C9E96_15890
NZ_PYJX01000165.1	Protein Homology	CDS	113535	113984	.	-	0	ID=cds-WP_000381612.1;Parent=gene-C9E96_RS15505;Dbxref=GenBank:WP_000381612.1;Name=WP_000381612.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461822.1;locus_tag=C9E96_RS15505;product=STM2901 family protein;protein_id=WP_000381612.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	114416	114859	.	-	.	ID=gene-C9E96_RS15510;Name=invH;gbkey=Gene;gene=invH;gene_biotype=protein_coding;locus_tag=C9E96_RS15510;old_locus_tag=C9E96_15895
NZ_PYJX01000165.1	Protein Homology	CDS	114416	114859	.	-	0	ID=cds-WP_000715096.1;Parent=gene-C9E96_RS15510;Dbxref=GenBank:WP_000715096.1;Name=WP_000715096.1;gbkey=CDS;gene=invH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461821.1;locus_tag=C9E96_RS15510;product=SPI-1 type III secretion system invasion lipoprotein InvH;protein_id=WP_000715096.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	115316	115966	.	+	.	ID=gene-C9E96_RS15515;Name=invF;gbkey=Gene;gene=invF;gene_biotype=protein_coding;locus_tag=C9E96_RS15515;old_locus_tag=C9E96_15900
NZ_PYJX01000165.1	Protein Homology	CDS	115316	115966	.	+	0	ID=cds-WP_001728903.1;Parent=gene-C9E96_RS15515;Dbxref=GenBank:WP_001728903.1;Name=WP_001728903.1;gbkey=CDS;gene=invF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461820.1;locus_tag=C9E96_RS15515;product=type III secretion system transcriptional activator InvF;protein_id=WP_001728903.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	115963	117651	.	+	.	ID=gene-C9E96_RS15520;Name=invG;gbkey=Gene;gene=invG;gene_biotype=protein_coding;locus_tag=C9E96_RS15520;old_locus_tag=C9E96_15905
NZ_PYJX01000165.1	Protein Homology	CDS	115963	117651	.	+	0	ID=cds-WP_000848114.1;Parent=gene-C9E96_RS15520;Dbxref=GenBank:WP_000848114.1;Name=WP_000848114.1;gbkey=CDS;gene=invG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461819.1;locus_tag=C9E96_RS15520;product=type III secretion system outer membrane ring protein InvG;protein_id=WP_000848114.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	117648	118766	.	+	.	ID=gene-C9E96_RS15525;Name=invE;gbkey=Gene;gene=invE;gene_biotype=protein_coding;locus_tag=C9E96_RS15525;old_locus_tag=C9E96_15910
NZ_PYJX01000165.1	Protein Homology	CDS	117648	118766	.	+	0	ID=cds-WP_000612171.1;Parent=gene-C9E96_RS15525;Dbxref=GenBank:WP_000612171.1;Name=WP_000612171.1;gbkey=CDS;gene=invE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461818.1;locus_tag=C9E96_RS15525;product=type III secretion system gatekeeper InvE;protein_id=WP_000612171.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	118791	120848	.	+	.	ID=gene-C9E96_RS15530;Name=invA;gbkey=Gene;gene=invA;gene_biotype=protein_coding;locus_tag=C9E96_RS15530;old_locus_tag=C9E96_15915
NZ_PYJX01000165.1	Protein Homology	CDS	118791	120848	.	+	0	ID=cds-WP_000927219.1;Parent=gene-C9E96_RS15530;Dbxref=GenBank:WP_000927219.1;Name=WP_000927219.1;gbkey=CDS;gene=invA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461817.1;locus_tag=C9E96_RS15530;product=type III secretion system export apparatus protein InvA;protein_id=WP_000927219.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	120872	121279	.	+	.	ID=gene-C9E96_RS15535;Name=spaK;gbkey=Gene;gene=spaK;gene_biotype=protein_coding;locus_tag=C9E96_RS15535;old_locus_tag=C9E96_15920
NZ_PYJX01000165.1	Protein Homology	CDS	120872	121279	.	+	0	ID=cds-WP_001164066.1;Parent=gene-C9E96_RS15535;Dbxref=GenBank:WP_001164066.1;Name=WP_001164066.1;gbkey=CDS;gene=spaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461816.1;locus_tag=C9E96_RS15535;product=SPI-1 type III secretion system chaperone SpaK;protein_id=WP_001164066.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	121276	122571	.	+	.	ID=gene-C9E96_RS15540;Name=invC;gbkey=Gene;gene=invC;gene_biotype=protein_coding;locus_tag=C9E96_RS15540;old_locus_tag=C9E96_15925
NZ_PYJX01000165.1	Protein Homology	CDS	121276	122571	.	+	0	ID=cds-WP_080203812.1;Parent=gene-C9E96_RS15540;Dbxref=GenBank:WP_080203812.1;Name=WP_080203812.1;gbkey=CDS;gene=invC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461815.1;locus_tag=C9E96_RS15540;product=SctN family type III secretion system ATPase InvC;protein_id=WP_080203812.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	122549	122992	.	+	.	ID=gene-C9E96_RS15545;Name=spaM;gbkey=Gene;gene=spaM;gene_biotype=protein_coding;locus_tag=C9E96_RS15545;old_locus_tag=C9E96_15930
NZ_PYJX01000165.1	Protein Homology	CDS	122549	122992	.	+	0	ID=cds-WP_000555884.1;Parent=gene-C9E96_RS15545;Dbxref=GenBank:WP_000555884.1;Name=WP_000555884.1;gbkey=CDS;gene=spaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461814.1;locus_tag=C9E96_RS15545;product=SPI-1 type III secretion system protein SpaM;protein_id=WP_000555884.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	gene	122992	124002	.	+	.	ID=gene-C9E96_RS15550;Name=spaN;gbkey=Gene;gene=spaN;gene_biotype=protein_coding;locus_tag=C9E96_RS15550;old_locus_tag=C9E96_15935
NZ_PYJX01000165.1	Protein Homology	CDS	122992	124002	.	+	0	ID=cds-WP_000503107.1;Parent=gene-C9E96_RS15550;Dbxref=GenBank:WP_000503107.1;Name=WP_000503107.1;gbkey=CDS;gene=spaN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461813.1;locus_tag=C9E96_RS15550;product=SPI-1 type III secretion system protein SpaN;protein_id=WP_000503107.1;transl_table=11
NZ_PYJX01000165.1	RefSeq	pseudogene	124002	124403	.	+	.	ID=gene-C9E96_RS15555;Name=C9E96_RS15555;end_range=124403,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS15555;old_locus_tag=C9E96_15940;partial=true;pseudo=true
NZ_PYJX01000165.1	Protein Homology	CDS	124002	124403	.	+	0	ID=cds-C9E96_RS15555;Parent=gene-C9E96_RS15555;Note=involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=124403,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461812.1;locus_tag=C9E96_RS15555;partial=true;product=YscQ/HrcQ family type III secretion apparatus protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000016.1 1 41224
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000016.1	RefSeq	region	1	41224	.	+	.	ID=NZ_PYJX01000016.1:1..41224;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000016.1	RefSeq	pseudogene	1	629	.	-	.	ID=gene-C9E96_RS00975;Name=srfA;gbkey=Gene;gene=srfA;gene_biotype=pseudogene;locus_tag=C9E96_RS00975;old_locus_tag=C9E96_01005;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000016.1	Protein Homology	CDS	1	629	.	-	0	ID=cds-C9E96_RS00975;Parent=gene-C9E96_RS00975;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=srfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460552.1;locus_tag=C9E96_RS00975;partial=true;product=virulence-associated effector SrfA;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	853	1086	.	+	.	ID=gene-C9E96_RS00980;Name=C9E96_RS00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00980;old_locus_tag=C9E96_01010
NZ_PYJX01000016.1	Protein Homology	CDS	853	1086	.	+	0	ID=cds-WP_080203684.1;Parent=gene-C9E96_RS00980;Dbxref=GenBank:WP_080203684.1;Name=WP_080203684.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460551.1;locus_tag=C9E96_RS00980;product=YdcY family protein;protein_id=WP_080203684.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	1091	1540	.	-	.	ID=gene-C9E96_RS00985;Name=C9E96_RS00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00985;old_locus_tag=C9E96_01015
NZ_PYJX01000016.1	Protein Homology	CDS	1091	1540	.	-	0	ID=cds-WP_001076571.1;Parent=gene-C9E96_RS00985;Dbxref=GenBank:WP_001076571.1;Name=WP_001076571.1;Ontology_term=GO:0055085,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460550.1;locus_tag=C9E96_RS00985;product=DMT family transporter;protein_id=WP_001076571.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	1540	2055	.	-	.	ID=gene-C9E96_RS00990;Name=mddA;gbkey=Gene;gene=mddA;gene_biotype=protein_coding;locus_tag=C9E96_RS00990;old_locus_tag=C9E96_01020
NZ_PYJX01000016.1	Protein Homology	CDS	1540	2055	.	-	0	ID=cds-WP_000155373.1;Parent=gene-C9E96_RS00990;Dbxref=GenBank:WP_000155373.1;Name=WP_000155373.1;Note=Keep exception level- 87%25 similar to E. coli K12 P76112%2C different gene symbol;gbkey=CDS;gene=mddA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460549.1;locus_tag=C9E96_RS00990;product=L-methionine sulfoximine/L-methionine sulfone acetyltransferase;protein_id=WP_000155373.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	2267	3304	.	+	.	ID=gene-C9E96_RS00995;Name=C9E96_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00995;old_locus_tag=C9E96_01025
NZ_PYJX01000016.1	Protein Homology	CDS	2267	3304	.	+	0	ID=cds-WP_001537345.1;Parent=gene-C9E96_RS00995;Dbxref=GenBank:WP_001537345.1;Name=WP_001537345.1;Ontology_term=GO:0016628;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors%2C NAD or NADP as acceptor|0016628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001517827.1;locus_tag=C9E96_RS00995;product=NADP-dependent oxidoreductase;protein_id=WP_001537345.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	3638	4303	.	+	.	ID=gene-C9E96_RS01000;Name=mcbR;gbkey=Gene;gene=mcbR;gene_biotype=protein_coding;locus_tag=C9E96_RS01000;old_locus_tag=C9E96_01030
NZ_PYJX01000016.1	Protein Homology	CDS	3638	4303	.	+	0	ID=cds-WP_001119592.1;Parent=gene-C9E96_RS01000;Dbxref=GenBank:WP_001119592.1;Name=WP_001119592.1;gbkey=CDS;gene=mcbR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460547.1;locus_tag=C9E96_RS01000;product=colanic acid/biofilm transcriptional regulator McbR;protein_id=WP_001119592.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	4359	6479	.	-	.	ID=gene-C9E96_RS01005;Name=pqqU;gbkey=Gene;gene=pqqU;gene_biotype=protein_coding;locus_tag=C9E96_RS01005;old_locus_tag=C9E96_01035
NZ_PYJX01000016.1	Protein Homology	CDS	4359	6479	.	-	0	ID=cds-WP_000692038.1;Parent=gene-C9E96_RS01005;Dbxref=GenBank:WP_000692038.1;Name=WP_000692038.1;gbkey=CDS;gene=pqqU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460546.1;locus_tag=C9E96_RS01005;product=TonB-dependent receptor PqqU;protein_id=WP_000692038.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	6743	7804	.	+	.	ID=gene-C9E96_RS01010;Name=C9E96_RS01010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01010;old_locus_tag=C9E96_01040
NZ_PYJX01000016.1	Protein Homology	CDS	6743	7804	.	+	0	ID=cds-WP_135493735.1;Parent=gene-C9E96_RS01010;Dbxref=GenBank:WP_135493735.1;Name=WP_135493735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460545.1;locus_tag=C9E96_RS01010;product=YncE family protein;protein_id=WP_135493735.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	7949	8170	.	+	.	ID=gene-C9E96_RS01015;Name=C9E96_RS01015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01015;old_locus_tag=C9E96_01045
NZ_PYJX01000016.1	Protein Homology	CDS	7949	8170	.	+	0	ID=cds-WP_000732362.1;Parent=gene-C9E96_RS01015;Dbxref=GenBank:WP_000732362.1;Name=WP_000732362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460544.1;locus_tag=C9E96_RS01015;product=YgdI/YgdR family lipoprotein;protein_id=WP_000732362.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	8247	9740	.	-	.	ID=gene-C9E96_RS01020;Name=ansP;gbkey=Gene;gene=ansP;gene_biotype=protein_coding;locus_tag=C9E96_RS01020;old_locus_tag=C9E96_01050
NZ_PYJX01000016.1	Protein Homology	CDS	8247	9740	.	-	0	ID=cds-WP_000857112.1;Parent=gene-C9E96_RS01020;Dbxref=GenBank:WP_000857112.1;Name=WP_000857112.1;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;gene=ansP;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460543.1;locus_tag=C9E96_RS01020;product=L-asparagine permease;protein_id=WP_000857112.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	10253	10885	.	+	.	ID=gene-C9E96_RS01030;Name=C9E96_RS01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01030;old_locus_tag=C9E96_01060
NZ_PYJX01000016.1	Protein Homology	CDS	10253	10885	.	+	0	ID=cds-WP_001120854.1;Parent=gene-C9E96_RS01030;Dbxref=GenBank:WP_001120854.1;Name=WP_001120854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460542.1;locus_tag=C9E96_RS01030;product=hypothetical protein;protein_id=WP_001120854.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	11168	12013	.	+	.	ID=gene-C9E96_RS01035;Name=nhoA;gbkey=Gene;gene=nhoA;gene_biotype=protein_coding;locus_tag=C9E96_RS01035;old_locus_tag=C9E96_01065
NZ_PYJX01000016.1	Protein Homology	CDS	11168	12013	.	+	0	ID=cds-WP_061380083.1;Parent=gene-C9E96_RS01035;Dbxref=GenBank:WP_061380083.1;Name=WP_061380083.1;Ontology_term=GO:0016407;gbkey=CDS;gene=nhoA;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460541.1;locus_tag=C9E96_RS01035;product=N-hydroxyarylamine O-acetyltransferase;protein_id=WP_061380083.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	12049	12942	.	-	.	ID=gene-C9E96_RS01040;Name=C9E96_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01040;old_locus_tag=C9E96_01070
NZ_PYJX01000016.1	Protein Homology	CDS	12049	12942	.	-	0	ID=cds-WP_080203913.1;Parent=gene-C9E96_RS01040;Dbxref=GenBank:WP_080203913.1;Name=WP_080203913.1;Ontology_term=GO:0009058,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460540.1;locus_tag=C9E96_RS01040;product=PhzF family isomerase;protein_id=WP_080203913.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	13048	13728	.	-	.	ID=gene-C9E96_RS01045;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=C9E96_RS01045;old_locus_tag=C9E96_01075
NZ_PYJX01000016.1	Protein Homology	CDS	13048	13728	.	-	0	ID=cds-WP_000617106.1;Parent=gene-C9E96_RS01045;Dbxref=GenBank:WP_000617106.1;Name=WP_000617106.1;Ontology_term=GO:0019645,GO:0008940,GO:0009325;gbkey=CDS;gene=narI;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460539.1;locus_tag=C9E96_RS01045;product=respiratory nitrate reductase subunit gamma;protein_id=WP_000617106.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	13725	14420	.	-	.	ID=gene-C9E96_RS01050;Name=narW;gbkey=Gene;gene=narW;gene_biotype=protein_coding;locus_tag=C9E96_RS01050;old_locus_tag=C9E96_01080
NZ_PYJX01000016.1	Protein Homology	CDS	13725	14420	.	-	0	ID=cds-WP_135369863.1;Parent=gene-C9E96_RS01050;Dbxref=GenBank:WP_135369863.1;Name=WP_135369863.1;Ontology_term=GO:0051131,GO:0051082;gbkey=CDS;gene=narW;go_function=unfolded protein binding|0051082||IEA;go_process=chaperone-mediated protein complex assembly|0051131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460538.1;locus_tag=C9E96_RS01050;product=nitrate reductase molybdenum cofactor assembly chaperone;protein_id=WP_135369863.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	14420	15964	.	-	.	ID=gene-C9E96_RS01055;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=C9E96_RS01055;old_locus_tag=C9E96_01085
NZ_PYJX01000016.1	Protein Homology	CDS	14420	15964	.	-	0	ID=cds-WP_000702595.1;Parent=gene-C9E96_RS01055;Dbxref=GenBank:WP_000702595.1;Name=WP_000702595.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;gene=narH;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460537.1;locus_tag=C9E96_RS01055;product=nitrate reductase subunit beta;protein_id=WP_000702595.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	15961	19701	.	-	.	ID=gene-C9E96_RS01060;Name=C9E96_RS01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01060;old_locus_tag=C9E96_01090
NZ_PYJX01000016.1	Protein Homology	CDS	15961	19701	.	-	0	ID=cds-WP_080203911.1;Parent=gene-C9E96_RS01060;Dbxref=GenBank:WP_080203911.1;Name=WP_080203911.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460536.1;locus_tag=C9E96_RS01060;product=nitrate reductase subunit alpha;protein_id=WP_080203911.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	19793	21181	.	-	.	ID=gene-C9E96_RS01065;Name=C9E96_RS01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01065;old_locus_tag=C9E96_01095
NZ_PYJX01000016.1	Protein Homology	CDS	19793	21181	.	-	0	ID=cds-WP_135493737.1;Parent=gene-C9E96_RS01065;Dbxref=GenBank:WP_135493737.1;Name=WP_135493737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460535.1;locus_tag=C9E96_RS01065;product=NarK family nitrate/nitrite MFS transporter;protein_id=WP_135493737.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	21395	21973	.	-	.	ID=gene-C9E96_RS01070;Name=C9E96_RS01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01070;old_locus_tag=C9E96_01100
NZ_PYJX01000016.1	Protein Homology	CDS	21395	21973	.	-	0	ID=cds-WP_000121044.1;Parent=gene-C9E96_RS01070;Dbxref=GenBank:WP_000121044.1;Name=WP_000121044.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460534.1;locus_tag=C9E96_RS01070;product=TetR family transcriptional regulator;protein_id=WP_000121044.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	22091	23578	.	+	.	ID=gene-C9E96_RS01075;Name=smvA;gbkey=Gene;gene=smvA;gene_biotype=protein_coding;locus_tag=C9E96_RS01075;old_locus_tag=C9E96_01105
NZ_PYJX01000016.1	Protein Homology	CDS	22091	23578	.	+	0	ID=cds-WP_000489734.1;Parent=gene-C9E96_RS01075;Dbxref=GenBank:WP_000489734.1;Name=WP_000489734.1;gbkey=CDS;gene=smvA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460533.1;locus_tag=C9E96_RS01075;product=methyl viologen efflux MFS transporter SmvA;protein_id=WP_000489734.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	23603	23983	.	-	.	ID=gene-C9E96_RS01080;Name=C9E96_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01080;old_locus_tag=C9E96_01110
NZ_PYJX01000016.1	Protein Homology	CDS	23603	23983	.	-	0	ID=cds-WP_014343841.1;Parent=gene-C9E96_RS01080;Dbxref=GenBank:WP_014343841.1;Name=WP_014343841.1;Ontology_term=GO:0016846,GO:0046872;gbkey=CDS;go_function=carbon-sulfur lyase activity|0016846||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460532.3;locus_tag=C9E96_RS01080;product=GFA family protein;protein_id=WP_014343841.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	24127	25215	.	-	.	ID=gene-C9E96_RS01085;Name=ompD;gbkey=Gene;gene=ompD;gene_biotype=protein_coding;locus_tag=C9E96_RS01085;old_locus_tag=C9E96_01115
NZ_PYJX01000016.1	Protein Homology	CDS	24127	25215	.	-	0	ID=cds-WP_000769035.1;Parent=gene-C9E96_RS01085;Dbxref=GenBank:WP_000769035.1;Name=WP_000769035.1;gbkey=CDS;gene=ompD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460531.1;locus_tag=C9E96_RS01085;product=porin OmpD;protein_id=WP_000769035.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	25739	26620	.	-	.	ID=gene-C9E96_RS01095;Name=yddG;gbkey=Gene;gene=yddG;gene_biotype=protein_coding;locus_tag=C9E96_RS01095;old_locus_tag=C9E96_01125
NZ_PYJX01000016.1	Protein Homology	CDS	25739	26620	.	-	0	ID=cds-WP_000203795.1;Parent=gene-C9E96_RS01095;Dbxref=GenBank:WP_000203795.1;Name=WP_000203795.1;gbkey=CDS;gene=yddG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000203799.1;locus_tag=C9E96_RS01095;product=aromatic amino acid efflux DMT transporter YddG;protein_id=WP_000203795.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	26898	29945	.	+	.	ID=gene-C9E96_RS01105;Name=fdnG;gbkey=Gene;gene=fdnG;gene_biotype=protein_coding;locus_tag=C9E96_RS01105;old_locus_tag=C9E96_01135
NZ_PYJX01000016.1	Protein Homology	CDS	26898	29945	.	+	0	ID=cds-WP_167852877.1;Parent=gene-C9E96_RS01105;Dbxref=GenBank:WP_167852877.1;Name=WP_167852877.1;Ontology_term=GO:0015942,GO:0008863,GO:0009055,GO:0043546,GO:0047111,GO:0009326;gbkey=CDS;gene=fdnG;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,electron transfer activity|0009055||IEA,molybdopterin cofactor binding|0043546||IEA,formate dehydrogenase (cytochrome-c-553) activity|0047111||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460529.1;locus_tag=C9E96_RS01105;product=formate dehydrogenase-N subunit alpha;protein_id=WP_167852877.1;transl_except=(pos:27483..27485%2Caa:Sec);transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	29959	30843	.	+	.	ID=gene-C9E96_RS01110;Name=fdxH;gbkey=Gene;gene=fdxH;gene_biotype=protein_coding;locus_tag=C9E96_RS01110;old_locus_tag=C9E96_01140
NZ_PYJX01000016.1	Protein Homology	CDS	29959	30843	.	+	0	ID=cds-WP_000061599.1;Parent=gene-C9E96_RS01110;Dbxref=GenBank:WP_000061599.1;Name=WP_000061599.1;Ontology_term=GO:0015944,GO:0008863,GO:0051539,GO:0016020;gbkey=CDS;gene=fdxH;go_component=membrane|0016020||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=formate oxidation|0015944||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460528.1;locus_tag=C9E96_RS01110;product=formate dehydrogenase subunit beta;protein_id=WP_000061599.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	30836	31492	.	+	.	ID=gene-C9E96_RS01115;Name=fdnI;gbkey=Gene;gene=fdnI;gene_biotype=protein_coding;locus_tag=C9E96_RS01115;old_locus_tag=C9E96_01145
NZ_PYJX01000016.1	Protein Homology	CDS	30836	31492	.	+	0	ID=cds-WP_000045657.1;Parent=gene-C9E96_RS01115;Dbxref=GenBank:WP_000045657.1;Name=WP_000045657.1;gbkey=CDS;gene=fdnI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460527.1;locus_tag=C9E96_RS01115;product=formate dehydrogenase-N subunit gamma;protein_id=WP_000045657.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	31583	32593	.	-	.	ID=gene-C9E96_RS01120;Name=adhP;gbkey=Gene;gene=adhP;gene_biotype=protein_coding;locus_tag=C9E96_RS01120;old_locus_tag=C9E96_01150
NZ_PYJX01000016.1	Protein Homology	CDS	31583	32593	.	-	0	ID=cds-WP_000642447.1;Parent=gene-C9E96_RS01120;Dbxref=GenBank:WP_000642447.1;Name=WP_000642447.1;gbkey=CDS;gene=adhP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460526.1;locus_tag=C9E96_RS01120;product=alcohol dehydrogenase AdhP;protein_id=WP_000642447.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	32875	34572	.	-	.	ID=gene-C9E96_RS01125;Name=C9E96_RS01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01125;old_locus_tag=C9E96_01155
NZ_PYJX01000016.1	Protein Homology	CDS	32875	34572	.	-	0	ID=cds-WP_000450511.1;Parent=gene-C9E96_RS01125;Dbxref=GenBank:WP_000450511.1;Name=WP_000450511.1;Ontology_term=GO:0004470,GO:0004471,GO:0046872,GO:0051287;gbkey=CDS;go_function=malic enzyme activity|0004470||IEA,malate dehydrogenase (decarboxylating) (NAD+) activity|0004471||IEA,metal ion binding|0046872||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460525.1;locus_tag=C9E96_RS01125;product=NAD-dependent malic enzyme;protein_id=WP_000450511.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	34747	34890	.	-	.	ID=gene-C9E96_RS01130;Name=sra;gbkey=Gene;gene=sra;gene_biotype=protein_coding;locus_tag=C9E96_RS01130;old_locus_tag=C9E96_01160
NZ_PYJX01000016.1	Protein Homology	CDS	34747	34890	.	-	0	ID=cds-WP_000841559.1;Parent=gene-C9E96_RS01130;Dbxref=GenBank:WP_000841559.1;Name=WP_000841559.1;gbkey=CDS;gene=sra;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460524.1;locus_tag=C9E96_RS01130;product=stationary-phase-induced ribosome-associated protein;protein_id=WP_000841559.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	34985	35200	.	-	.	ID=gene-C9E96_RS01135;Name=bdm;gbkey=Gene;gene=bdm;gene_biotype=protein_coding;locus_tag=C9E96_RS01135;old_locus_tag=C9E96_01165
NZ_PYJX01000016.1	Protein Homology	CDS	34985	35200	.	-	0	ID=cds-WP_000495700.1;Parent=gene-C9E96_RS01135;Dbxref=GenBank:WP_000495700.1;Name=WP_000495700.1;gbkey=CDS;gene=bdm;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460523.1;locus_tag=C9E96_RS01135;product=biofilm-dependent modulation protein;protein_id=WP_000495700.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	35712	36143	.	+	.	ID=gene-C9E96_RS01140;Name=C9E96_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01140;old_locus_tag=C9E96_01170
NZ_PYJX01000016.1	Protein Homology	CDS	35712	36143	.	+	0	ID=cds-WP_000152297.1;Parent=gene-C9E96_RS01140;Dbxref=GenBank:WP_000152297.1;Name=WP_000152297.1;Ontology_term=GO:0006972,GO:0006979,GO:0033194,GO:0004601,GO:0051920,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=peroxidase activity|0004601||IEA,peroxiredoxin activity|0051920||IEA;go_process=hyperosmotic response|0006972||IEA,response to oxidative stress|0006979||IEA,response to hydroperoxide|0033194||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460522.1;locus_tag=C9E96_RS01140;product=OsmC family protein;protein_id=WP_000152297.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	36493	36822	.	+	.	ID=gene-C9E96_RS01145;Name=hdeB;gbkey=Gene;gene=hdeB;gene_biotype=protein_coding;locus_tag=C9E96_RS01145;old_locus_tag=C9E96_01175
NZ_PYJX01000016.1	Protein Homology	CDS	36493	36822	.	+	0	ID=cds-WP_001032161.1;Parent=gene-C9E96_RS01145;Dbxref=GenBank:WP_001032161.1;Name=WP_001032161.1;gbkey=CDS;gene=hdeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460521.1;locus_tag=C9E96_RS01145;product=acid-activated periplasmic chaperone HdeB;protein_id=WP_001032161.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	36964	37749	.	+	.	ID=gene-C9E96_RS01150;Name=C9E96_RS01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01150;old_locus_tag=C9E96_01180
NZ_PYJX01000016.1	Protein Homology	CDS	36964	37749	.	+	0	ID=cds-WP_080203910.1;Parent=gene-C9E96_RS01150;Dbxref=GenBank:WP_080203910.1;Name=WP_080203910.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460520.1;locus_tag=C9E96_RS01150;product=OBAP family protein;protein_id=WP_080203910.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	37878	39662	.	+	.	ID=gene-C9E96_RS01155;Name=treZ;gbkey=Gene;gene=treZ;gene_biotype=protein_coding;locus_tag=C9E96_RS01155;old_locus_tag=C9E96_01185
NZ_PYJX01000016.1	Protein Homology	CDS	37878	39662	.	+	0	ID=cds-WP_080203909.1;Parent=gene-C9E96_RS01155;Dbxref=GenBank:WP_080203909.1;Name=WP_080203909.1;Ontology_term=GO:0005992,GO:0033942;gbkey=CDS;gene=treZ;go_function=4-alpha-D-(1->4)-alpha-D-glucanotrehalose trehalohydrolase activity|0033942||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460519.1;locus_tag=C9E96_RS01155;product=malto-oligosyltrehalose trehalohydrolase;protein_id=WP_080203909.1;transl_table=11
NZ_PYJX01000016.1	RefSeq	gene	39659	41224	.	+	.	ID=gene-C9E96_RS01160;Name=treY;end_range=41224,.;gbkey=Gene;gene=treY;gene_biotype=protein_coding;locus_tag=C9E96_RS01160;old_locus_tag=C9E96_01190;partial=true
NZ_PYJX01000016.1	Protein Homology	CDS	39659	41224	.	+	0	ID=cds-WP_135493741.1;Parent=gene-C9E96_RS01160;Dbxref=GenBank:WP_135493741.1;Name=WP_135493741.1;Ontology_term=GO:0005992,GO:0047470;end_range=41224,.;gbkey=CDS;gene=treY;go_function=(1%2C4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity|0047470||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460518.1;locus_tag=C9E96_RS01160;partial=true;product=malto-oligosyltrehalose synthase;protein_id=WP_135493741.1;transl_table=11
##sequence-region NZ_PYJX01000008.1 1 229
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000008.1	RefSeq	region	1	229	.	+	.	ID=NZ_PYJX01000008.1:1..229;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
##sequence-region NZ_PYJX01000031.1 1 229
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000031.1	RefSeq	region	1	229	.	+	.	ID=NZ_PYJX01000031.1:1..229;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
##sequence-region NZ_PYJX01000244.1 1 40156
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000244.1	RefSeq	region	1	40156	.	+	.	ID=NZ_PYJX01000244.1:1..40156;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000244.1	RefSeq	gene	1	619	.	-	.	ID=gene-C9E96_RS22970;Name=C9E96_RS22970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22970;old_locus_tag=C9E96_23555;partial=true;start_range=.,1
NZ_PYJX01000244.1	Protein Homology	CDS	1	619	.	-	0	ID=cds-WP_135494722.1;Parent=gene-C9E96_RS22970;Dbxref=GenBank:WP_135494722.1;Name=WP_135494722.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461225.1;locus_tag=C9E96_RS22970;partial=true;product=MFS transporter;protein_id=WP_135494722.1;start_range=.,1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	892	2520	.	+	.	ID=gene-C9E96_RS22975;Name=glpA;gbkey=Gene;gene=glpA;gene_biotype=protein_coding;locus_tag=C9E96_RS22975;old_locus_tag=C9E96_23560
NZ_PYJX01000244.1	Protein Homology	CDS	892	2520	.	+	0	ID=cds-WP_000857207.1;Parent=gene-C9E96_RS22975;Dbxref=GenBank:WP_000857207.1;Name=WP_000857207.1;Ontology_term=GO:0006072,GO:0046174,GO:0004368,GO:0010181,GO:0050660,GO:0009331;gbkey=CDS;gene=glpA;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA,FMN binding|0010181||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA,polyol catabolic process|0046174||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461226.1;locus_tag=C9E96_RS22975;product=anaerobic glycerol-3-phosphate dehydrogenase subunit A;protein_id=WP_000857207.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	2510	3769	.	+	.	ID=gene-C9E96_RS22980;Name=glpB;gbkey=Gene;gene=glpB;gene_biotype=protein_coding;locus_tag=C9E96_RS22980;old_locus_tag=C9E96_23565
NZ_PYJX01000244.1	Protein Homology	CDS	2510	3769	.	+	0	ID=cds-WP_000667152.1;Parent=gene-C9E96_RS22980;Dbxref=GenBank:WP_000667152.1;Name=WP_000667152.1;Ontology_term=GO:0004368;gbkey=CDS;gene=glpB;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461227.1;locus_tag=C9E96_RS22980;product=glycerol-3-phosphate dehydrogenase subunit GlpB;protein_id=WP_000667152.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	3766	4956	.	+	.	ID=gene-C9E96_RS22985;Name=glpC;gbkey=Gene;gene=glpC;gene_biotype=protein_coding;locus_tag=C9E96_RS22985;old_locus_tag=C9E96_23570
NZ_PYJX01000244.1	Protein Homology	CDS	3766	4956	.	+	0	ID=cds-WP_001285726.1;Parent=gene-C9E96_RS22985;Dbxref=GenBank:WP_001285726.1;Name=WP_001285726.1;Ontology_term=GO:0006071,GO:0009061,GO:0004368,GO:0051536,GO:0009331,GO:0016020;gbkey=CDS;gene=glpC;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA,membrane|0016020||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=glycerol metabolic process|0006071||IEA,anaerobic respiration|0009061||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461228.1;locus_tag=C9E96_RS22985;product=anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC;protein_id=WP_001285726.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	5381	6403	.	+	.	ID=gene-C9E96_RS22995;Name=sseL;gbkey=Gene;gene=sseL;gene_biotype=protein_coding;locus_tag=C9E96_RS22995;old_locus_tag=C9E96_23580
NZ_PYJX01000244.1	Protein Homology	CDS	5381	6403	.	+	0	ID=cds-WP_023993402.1;Parent=gene-C9E96_RS22995;Dbxref=GenBank:WP_023993402.1;Name=WP_023993402.1;gbkey=CDS;gene=sseL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001017745.1;locus_tag=C9E96_RS22995;product=SPI-2 type III secretion system effector deubiquitinase SseL;protein_id=WP_023993402.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	6490	6666	.	-	.	ID=gene-C9E96_RS23000;Name=C9E96_RS23000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23000;old_locus_tag=C9E96_23585
NZ_PYJX01000244.1	Protein Homology	CDS	6490	6666	.	-	0	ID=cds-WP_023993403.1;Parent=gene-C9E96_RS23000;Dbxref=GenBank:WP_023993403.1;Name=WP_023993403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461230.1;locus_tag=C9E96_RS23000;product=competence damage-inducible protein A;protein_id=WP_023993403.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	6672	7475	.	-	.	ID=gene-C9E96_RS23005;Name=yfaU;gbkey=Gene;gene=yfaU;gene_biotype=protein_coding;locus_tag=C9E96_RS23005;old_locus_tag=C9E96_23590
NZ_PYJX01000244.1	Protein Homology	CDS	6672	7475	.	-	0	ID=cds-WP_000992941.1;Parent=gene-C9E96_RS23005;Dbxref=GenBank:WP_000992941.1;Name=WP_000992941.1;gbkey=CDS;gene=yfaU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461231.1;locus_tag=C9E96_RS23005;product=2-keto-3-deoxy-L-rhamnonate aldolase;protein_id=WP_000992941.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	7501	8790	.	-	.	ID=gene-C9E96_RS23010;Name=C9E96_RS23010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23010;old_locus_tag=C9E96_23595
NZ_PYJX01000244.1	Protein Homology	CDS	7501	8790	.	-	0	ID=cds-WP_000028931.1;Parent=gene-C9E96_RS23010;Dbxref=GenBank:WP_000028931.1;Name=WP_000028931.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461232.1;locus_tag=C9E96_RS23010;product=MFS transporter;protein_id=WP_000028931.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	8846	10051	.	-	.	ID=gene-C9E96_RS23015;Name=rhmD;gbkey=Gene;gene=rhmD;gene_biotype=protein_coding;locus_tag=C9E96_RS23015;old_locus_tag=C9E96_23600
NZ_PYJX01000244.1	Protein Homology	CDS	8846	10051	.	-	0	ID=cds-WP_023993404.1;Parent=gene-C9E96_RS23015;Dbxref=GenBank:WP_023993404.1;Name=WP_023993404.1;Ontology_term=GO:0050032;gbkey=CDS;gene=rhmD;go_function=L-rhamnonate dehydratase activity|0050032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416750.2;locus_tag=C9E96_RS23015;product=L-rhamnonate dehydratase;protein_id=WP_023993404.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	10065	10847	.	-	.	ID=gene-C9E96_RS23020;Name=C9E96_RS23020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23020;old_locus_tag=C9E96_23605
NZ_PYJX01000244.1	Protein Homology	CDS	10065	10847	.	-	0	ID=cds-WP_000894170.1;Parent=gene-C9E96_RS23020;Dbxref=GenBank:WP_000894170.1;Name=WP_000894170.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461234.1;locus_tag=C9E96_RS23020;product=IclR family transcriptional regulator;protein_id=WP_000894170.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	11097	12293	.	-	.	ID=gene-C9E96_RS23025;Name=C9E96_RS23025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23025;old_locus_tag=C9E96_23610
NZ_PYJX01000244.1	Protein Homology	CDS	11097	12293	.	-	0	ID=cds-WP_023993405.1;Parent=gene-C9E96_RS23025;Dbxref=GenBank:WP_023993405.1;Name=WP_023993405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461235.1;locus_tag=C9E96_RS23025;product=nicotinamide mononucleotide deamidase-related protein YfaY;protein_id=WP_023993405.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	12408	12950	.	-	.	ID=gene-C9E96_RS23030;Name=C9E96_RS23030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23030;old_locus_tag=C9E96_23615
NZ_PYJX01000244.1	Protein Homology	CDS	12408	12950	.	-	0	ID=cds-WP_001670658.1;Parent=gene-C9E96_RS23030;Dbxref=GenBank:WP_001670658.1;Name=WP_001670658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311165.2;locus_tag=C9E96_RS23030;product=YfaZ family protein;protein_id=WP_001670658.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	13229	13654	.	+	.	ID=gene-C9E96_RS23035;Name=nudI;gbkey=Gene;gene=nudI;gene_biotype=protein_coding;locus_tag=C9E96_RS23035;old_locus_tag=C9E96_23620
NZ_PYJX01000244.1	Protein Homology	CDS	13229	13654	.	+	0	ID=cds-WP_001249900.1;Parent=gene-C9E96_RS23035;Dbxref=GenBank:WP_001249900.1;Name=WP_001249900.1;Ontology_term=GO:0016818;gbkey=CDS;gene=nudI;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461237.1;locus_tag=C9E96_RS23035;product=nucleoside triphosphatase NudI;protein_id=WP_001249900.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	13699	14304	.	-	.	ID=gene-C9E96_RS23040;Name=pmrG;gbkey=Gene;gene=pmrG;gene_biotype=protein_coding;locus_tag=C9E96_RS23040;old_locus_tag=C9E96_23625
NZ_PYJX01000244.1	Protein Homology	CDS	13699	14304	.	-	0	ID=cds-WP_000879246.1;Parent=gene-C9E96_RS23040;Dbxref=GenBank:WP_000879246.1;Name=WP_000879246.1;gbkey=CDS;gene=pmrG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461238.1;locus_tag=C9E96_RS23040;product=lipopolysaccharide core heptose(II)-phosphate phosphatase PmrG;protein_id=WP_000879246.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	14603	15742	.	+	.	ID=gene-C9E96_RS23045;Name=arnB;gbkey=Gene;gene=arnB;gene_biotype=protein_coding;locus_tag=C9E96_RS23045;old_locus_tag=C9E96_23630
NZ_PYJX01000244.1	Protein Homology	CDS	14603	15742	.	+	0	ID=cds-WP_135494736.1;Parent=gene-C9E96_RS23045;Dbxref=GenBank:WP_135494736.1;Name=WP_135494736.1;Ontology_term=GO:0008483;gbkey=CDS;gene=arnB;go_function=transaminase activity|0008483||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_024188371.1;locus_tag=C9E96_RS23045;product=UDP-4-amino-4-deoxy-L-arabinose aminotransferase;protein_id=WP_135494736.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	15745	16728	.	+	.	ID=gene-C9E96_RS23050;Name=arnC;gbkey=Gene;gene=arnC;gene_biotype=protein_coding;locus_tag=C9E96_RS23050;old_locus_tag=C9E96_23635
NZ_PYJX01000244.1	Protein Homology	CDS	15745	16728	.	+	0	ID=cds-WP_000458894.1;Parent=gene-C9E96_RS23050;Dbxref=GenBank:WP_000458894.1;Name=WP_000458894.1;Ontology_term=GO:0016780;gbkey=CDS;gene=arnC;go_function=phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461240.1;locus_tag=C9E96_RS23050;product=undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase;protein_id=WP_000458894.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	16725	18707	.	+	.	ID=gene-C9E96_RS23055;Name=arnA;gbkey=Gene;gene=arnA;gene_biotype=protein_coding;locus_tag=C9E96_RS23055;old_locus_tag=C9E96_23640
NZ_PYJX01000244.1	Protein Homology	CDS	16725	18707	.	+	0	ID=cds-WP_080203967.1;Parent=gene-C9E96_RS23055;Dbxref=GenBank:WP_080203967.1;Name=WP_080203967.1;Ontology_term=GO:0009058,GO:0016742;gbkey=CDS;gene=arnA;go_function=hydroxymethyl-%2C formyl- and related transferase activity|0016742||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461241.1;locus_tag=C9E96_RS23055;product=bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;protein_id=WP_080203967.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	18704	19603	.	+	.	ID=gene-C9E96_RS23060;Name=arnD;gbkey=Gene;gene=arnD;gene_biotype=protein_coding;locus_tag=C9E96_RS23060;old_locus_tag=C9E96_23645
NZ_PYJX01000244.1	Protein Homology	CDS	18704	19603	.	+	0	ID=cds-WP_080203968.1;Parent=gene-C9E96_RS23060;Dbxref=GenBank:WP_080203968.1;Name=WP_080203968.1;Ontology_term=GO:0016810;gbkey=CDS;gene=arnD;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461242.1;locus_tag=C9E96_RS23060;product=4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase;protein_id=WP_080203968.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	19600	21246	.	+	.	ID=gene-C9E96_RS23065;Name=arnT;gbkey=Gene;gene=arnT;gene_biotype=protein_coding;locus_tag=C9E96_RS23065;old_locus_tag=C9E96_23650
NZ_PYJX01000244.1	Protein Homology	CDS	19600	21246	.	+	0	ID=cds-WP_021000544.1;Parent=gene-C9E96_RS23065;Dbxref=GenBank:WP_021000544.1;Name=WP_021000544.1;Ontology_term=GO:0006493,GO:0000030,GO:0016763,GO:0016020;gbkey=CDS;gene=arnT;go_component=membrane|0016020||IEA;go_function=mannosyltransferase activity|0000030||IEA,pentosyltransferase activity|0016763||IEA;go_process=protein O-linked glycosylation|0006493||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461243.1;locus_tag=C9E96_RS23065;product=lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase;protein_id=WP_021000544.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	21243	21578	.	+	.	ID=gene-C9E96_RS23070;Name=arnE;gbkey=Gene;gene=arnE;gene_biotype=protein_coding;locus_tag=C9E96_RS23070;old_locus_tag=C9E96_23655
NZ_PYJX01000244.1	Protein Homology	CDS	21243	21578	.	+	0	ID=cds-WP_000580685.1;Parent=gene-C9E96_RS23070;Dbxref=GenBank:WP_000580685.1;Name=WP_000580685.1;gbkey=CDS;gene=arnE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461244.1;locus_tag=C9E96_RS23070;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE;protein_id=WP_000580685.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	21578	21955	.	+	.	ID=gene-C9E96_RS23075;Name=arnF;gbkey=Gene;gene=arnF;gene_biotype=protein_coding;locus_tag=C9E96_RS23075;old_locus_tag=C9E96_23660
NZ_PYJX01000244.1	Protein Homology	CDS	21578	21955	.	+	0	ID=cds-WP_000538694.1;Parent=gene-C9E96_RS23075;Dbxref=GenBank:WP_000538694.1;Name=WP_000538694.1;gbkey=CDS;gene=arnF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461245.1;locus_tag=C9E96_RS23075;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF;protein_id=WP_000538694.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	21950	22207	.	-	.	ID=gene-C9E96_RS23080;Name=pmrD;gbkey=Gene;gene=pmrD;gene_biotype=protein_coding;locus_tag=C9E96_RS23080;old_locus_tag=C9E96_23665
NZ_PYJX01000244.1	Protein Homology	CDS	21950	22207	.	-	0	ID=cds-WP_000455132.1;Parent=gene-C9E96_RS23080;Dbxref=GenBank:WP_000455132.1;Name=WP_000455132.1;gbkey=CDS;gene=pmrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461246.1;locus_tag=C9E96_RS23080;product=signal transduction protein PmrD;protein_id=WP_000455132.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	22305	23672	.	-	.	ID=gene-C9E96_RS23085;Name=menE;gbkey=Gene;gene=menE;gene_biotype=protein_coding;locus_tag=C9E96_RS23085;old_locus_tag=C9E96_23670
NZ_PYJX01000244.1	Protein Homology	CDS	22305	23672	.	-	0	ID=cds-WP_023245205.1;Parent=gene-C9E96_RS23085;Dbxref=GenBank:WP_023245205.1;Name=WP_023245205.1;Ontology_term=GO:0009234,GO:0005524,GO:0008756;gbkey=CDS;gene=menE;go_function=ATP binding|0005524||IEA,o-succinylbenzoate-CoA ligase activity|0008756||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461247.1;locus_tag=C9E96_RS23085;product=o-succinylbenzoate--CoA ligase;protein_id=WP_023245205.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	23669	24631	.	-	.	ID=gene-C9E96_RS23090;Name=menC;gbkey=Gene;gene=menC;gene_biotype=protein_coding;locus_tag=C9E96_RS23090;old_locus_tag=C9E96_23675
NZ_PYJX01000244.1	Protein Homology	CDS	23669	24631	.	-	0	ID=cds-WP_135494725.1;Parent=gene-C9E96_RS23090;Dbxref=GenBank:WP_135494725.1;Name=WP_135494725.1;Ontology_term=GO:0009234,GO:0000287,GO:0016836;gbkey=CDS;gene=menC;go_function=magnesium ion binding|0000287||IEA,hydro-lyase activity|0016836||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461248.1;locus_tag=C9E96_RS23090;product=o-succinylbenzoate synthase;protein_id=WP_135494725.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	24631	25488	.	-	.	ID=gene-C9E96_RS23095;Name=menB;gbkey=Gene;gene=menB;gene_biotype=protein_coding;locus_tag=C9E96_RS23095;old_locus_tag=C9E96_23680
NZ_PYJX01000244.1	Protein Homology	CDS	24631	25488	.	-	0	ID=cds-WP_000640013.1;Parent=gene-C9E96_RS23095;Dbxref=GenBank:WP_000640013.1;Name=WP_000640013.1;Ontology_term=GO:0009234,GO:0008935;gbkey=CDS;gene=menB;go_function=1%2C4-dihydroxy-2-naphthoyl-CoA synthase activity|0008935||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001641973.1;locus_tag=C9E96_RS23095;product=1%2C4-dihydroxy-2-naphthoyl-CoA synthase;protein_id=WP_000640013.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	25503	26261	.	-	.	ID=gene-C9E96_RS23100;Name=menH;gbkey=Gene;gene=menH;gene_biotype=protein_coding;locus_tag=C9E96_RS23100;old_locus_tag=C9E96_23685
NZ_PYJX01000244.1	Protein Homology	CDS	25503	26261	.	-	0	ID=cds-WP_080203969.1;Parent=gene-C9E96_RS23100;Dbxref=GenBank:WP_080203969.1;Name=WP_080203969.1;Ontology_term=GO:0009234,GO:0070205;gbkey=CDS;gene=menH;go_function=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase activity|0070205||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461250.1;locus_tag=C9E96_RS23100;product=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase;protein_id=WP_080203969.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	26258	27928	.	-	.	ID=gene-C9E96_RS23105;Name=menD;gbkey=Gene;gene=menD;gene_biotype=protein_coding;locus_tag=C9E96_RS23105;old_locus_tag=C9E96_23690
NZ_PYJX01000244.1	Protein Homology	CDS	26258	27928	.	-	0	ID=cds-WP_023993410.1;Parent=gene-C9E96_RS23105;Dbxref=GenBank:WP_023993410.1;Name=WP_023993410.1;Ontology_term=GO:0009234,GO:0030976,GO:0070204;gbkey=CDS;gene=menD;go_function=thiamine pyrophosphate binding|0030976||IEA,2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity|0070204||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461251.1;locus_tag=C9E96_RS23105;product=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase;protein_id=WP_023993410.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	28014	29309	.	-	.	ID=gene-C9E96_RS23110;Name=menF;gbkey=Gene;gene=menF;gene_biotype=protein_coding;locus_tag=C9E96_RS23110;old_locus_tag=C9E96_23695
NZ_PYJX01000244.1	Protein Homology	CDS	28014	29309	.	-	0	ID=cds-WP_135494729.1;Parent=gene-C9E96_RS23110;Dbxref=GenBank:WP_135494729.1;Name=WP_135494729.1;Ontology_term=GO:0008909;gbkey=CDS;gene=menF;go_function=isochorismate synthase activity|0008909||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461252.1;locus_tag=C9E96_RS23110;product=isochorismate synthase MenF;protein_id=WP_135494729.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	29410	29715	.	-	.	ID=gene-C9E96_RS23115;Name=elaB;gbkey=Gene;gene=elaB;gene_biotype=protein_coding;locus_tag=C9E96_RS23115;old_locus_tag=C9E96_23700
NZ_PYJX01000244.1	Protein Homology	CDS	29410	29715	.	-	0	ID=cds-WP_001519663.1;Parent=gene-C9E96_RS23115;Dbxref=GenBank:WP_001519663.1;Name=WP_001519663.1;gbkey=CDS;gene=elaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311181.1;locus_tag=C9E96_RS23115;product=stress response protein ElaB;protein_id=WP_001519663.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	29770	30231	.	-	.	ID=gene-C9E96_RS23120;Name=C9E96_RS23120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23120;old_locus_tag=C9E96_23705
NZ_PYJX01000244.1	Protein Homology	CDS	29770	30231	.	-	0	ID=cds-WP_023993411.1;Parent=gene-C9E96_RS23120;Dbxref=GenBank:WP_023993411.1;Name=WP_023993411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461254.1;locus_tag=C9E96_RS23120;product=GNAT family N-acetyltransferase;protein_id=WP_023993411.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	30292	31209	.	+	.	ID=gene-C9E96_RS23125;Name=rbn;gbkey=Gene;gene=rbn;gene_biotype=protein_coding;locus_tag=C9E96_RS23125;old_locus_tag=C9E96_23710
NZ_PYJX01000244.1	Protein Homology	CDS	30292	31209	.	+	0	ID=cds-WP_000419093.1;Parent=gene-C9E96_RS23125;Dbxref=GenBank:WP_000419093.1;Name=WP_000419093.1;Ontology_term=GO:0042780,GO:0016891;gbkey=CDS;gene=rbn;go_function=RNA endonuclease activity%2C producing 5'-phosphomonoesters|0016891||IEA;go_process=tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461255.1;locus_tag=C9E96_RS23125;product=ribonuclease BN;protein_id=WP_000419093.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	31275	32276	.	+	.	ID=gene-C9E96_RS23130;Name=C9E96_RS23130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23130;old_locus_tag=C9E96_23715
NZ_PYJX01000244.1	Protein Homology	CDS	31275	32276	.	+	0	ID=cds-WP_080203970.1;Parent=gene-C9E96_RS23130;Dbxref=GenBank:WP_080203970.1;Name=WP_080203970.1;Ontology_term=GO:0000160,GO:0006935,GO:0000156;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,chemotaxis|0006935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461256.1;locus_tag=C9E96_RS23130;product=chemotaxis protein;protein_id=WP_080203970.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	32317	34098	.	-	.	ID=gene-C9E96_RS23135;Name=C9E96_RS23135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23135;old_locus_tag=C9E96_23720
NZ_PYJX01000244.1	Protein Homology	CDS	32317	34098	.	-	0	ID=cds-WP_080203971.1;Parent=gene-C9E96_RS23135;Dbxref=GenBank:WP_080203971.1;Name=WP_080203971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461257.1;locus_tag=C9E96_RS23135;product=vWA domain-containing protein;protein_id=WP_080203971.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	34567	34725	.	+	.	ID=gene-C9E96_RS23140;Name=C9E96_RS23140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23140
NZ_PYJX01000244.1	Protein Homology	CDS	34567	34725	.	+	0	ID=cds-WP_077221223.1;Parent=gene-C9E96_RS23140;Dbxref=GenBank:WP_077221223.1;Name=WP_077221223.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF020544.6;locus_tag=C9E96_RS23140;product=DUF1877 family protein;protein_id=WP_077221223.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	35103	36560	.	-	.	ID=gene-C9E96_RS23145;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=C9E96_RS23145;old_locus_tag=C9E96_23725
NZ_PYJX01000244.1	Protein Homology	CDS	35103	36560	.	-	0	ID=cds-WP_000156667.1;Parent=gene-C9E96_RS23145;Dbxref=GenBank:WP_000156667.1;Name=WP_000156667.1;Ontology_term=GO:0008137;gbkey=CDS;gene=nuoN;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416779.2;locus_tag=C9E96_RS23145;product=NADH-quinone oxidoreductase subunit NuoN;protein_id=WP_000156667.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	36567	38096	.	-	.	ID=gene-C9E96_RS23150;Name=nuoM;gbkey=Gene;gene=nuoM;gene_biotype=protein_coding;locus_tag=C9E96_RS23150;old_locus_tag=C9E96_23730
NZ_PYJX01000244.1	Protein Homology	CDS	36567	38096	.	-	0	ID=cds-WP_000926431.1;Parent=gene-C9E96_RS23150;Dbxref=GenBank:WP_000926431.1;Name=WP_000926431.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoM;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129465.1;locus_tag=C9E96_RS23150;product=NADH-quinone oxidoreductase subunit M;protein_id=WP_000926431.1;transl_table=11
NZ_PYJX01000244.1	RefSeq	gene	38410	40156	.	-	.	ID=gene-C9E96_RS23155;Name=nuoL;end_range=40156,.;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=C9E96_RS23155;old_locus_tag=C9E96_23740;partial=true
NZ_PYJX01000244.1	Protein Homology	CDS	38410	40156	.	-	1	ID=cds-WP_135494732.1;Parent=gene-C9E96_RS23155;Dbxref=GenBank:WP_135494732.1;Name=WP_135494732.1;Ontology_term=GO:0042773,GO:0008137;end_range=40156,.;gbkey=CDS;gene=nuoL;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129466.1;locus_tag=C9E96_RS23155;partial=true;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_135494732.1;transl_table=11
##sequence-region NZ_PYJX01000034.1 1 40091
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000034.1	RefSeq	region	1	40091	.	+	.	ID=NZ_PYJX01000034.1:1..40091;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000034.1	RefSeq	gene	122	769	.	-	.	ID=gene-C9E96_RS02075;Name=C9E96_RS02075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02075;old_locus_tag=C9E96_02115
NZ_PYJX01000034.1	Protein Homology	CDS	122	769	.	-	0	ID=cds-WP_001109471.1;Parent=gene-C9E96_RS02075;Dbxref=GenBank:WP_001109471.1;Name=WP_001109471.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003035823.1;locus_tag=C9E96_RS02075;product=MBL fold metallo-hydrolase;protein_id=WP_001109471.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	797	1345	.	-	.	ID=gene-C9E96_RS02080;Name=C9E96_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02080;old_locus_tag=C9E96_02120
NZ_PYJX01000034.1	Protein Homology	CDS	797	1345	.	-	0	ID=cds-WP_000357052.1;Parent=gene-C9E96_RS02080;Dbxref=GenBank:WP_000357052.1;Name=WP_000357052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459971.1;locus_tag=C9E96_RS02080;product=YcbK family protein;protein_id=WP_000357052.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	1605	3452	.	-	.	ID=gene-C9E96_RS02085;Name=ldtD;gbkey=Gene;gene=ldtD;gene_biotype=protein_coding;locus_tag=C9E96_RS02085;old_locus_tag=C9E96_02130
NZ_PYJX01000034.1	Protein Homology	CDS	1605	3452	.	-	0	ID=cds-WP_000925896.1;Parent=gene-C9E96_RS02085;Dbxref=GenBank:WP_000925896.1;Name=WP_000925896.1;Ontology_term=GO:0016740;gbkey=CDS;gene=ldtD;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459970.1;locus_tag=C9E96_RS02085;product=L%2CD-transpeptidase;protein_id=WP_000925896.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	3797	8263	.	-	.	ID=gene-C9E96_RS02095;Name=mukB;gbkey=Gene;gene=mukB;gene_biotype=protein_coding;locus_tag=C9E96_RS02095;old_locus_tag=C9E96_02135
NZ_PYJX01000034.1	Protein Homology	CDS	3797	8263	.	-	0	ID=cds-WP_135493791.1;Parent=gene-C9E96_RS02095;Dbxref=GenBank:WP_135493791.1;Name=WP_135493791.1;Ontology_term=GO:0007059,GO:0030261,GO:0003677;gbkey=CDS;gene=mukB;go_function=DNA binding|0003677||IEA;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459969.1;locus_tag=C9E96_RS02095;product=chromosome partition protein MukB;protein_id=WP_135493791.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	8263	8967	.	-	.	ID=gene-C9E96_RS02100;Name=mukE;gbkey=Gene;gene=mukE;gene_biotype=protein_coding;locus_tag=C9E96_RS02100;old_locus_tag=C9E96_02140
NZ_PYJX01000034.1	Protein Homology	CDS	8263	8967	.	-	0	ID=cds-WP_000060027.1;Parent=gene-C9E96_RS02100;Dbxref=GenBank:WP_000060027.1;Name=WP_000060027.1;Ontology_term=GO:0007059,GO:0030261;gbkey=CDS;gene=mukE;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459968.1;locus_tag=C9E96_RS02100;product=chromosome partition protein MukE;protein_id=WP_000060027.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	8948	10270	.	-	.	ID=gene-C9E96_RS02105;Name=mukF;gbkey=Gene;gene=mukF;gene_biotype=protein_coding;locus_tag=C9E96_RS02105;old_locus_tag=C9E96_02145
NZ_PYJX01000034.1	Protein Homology	CDS	8948	10270	.	-	0	ID=cds-WP_001288828.1;Parent=gene-C9E96_RS02105;Dbxref=GenBank:WP_001288828.1;Name=WP_001288828.1;Ontology_term=GO:0007059,GO:0005509;gbkey=CDS;gene=mukF;go_function=calcium ion binding|0005509||IEA;go_process=chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123549.1;locus_tag=C9E96_RS02105;product=chromosome partition protein MukF;protein_id=WP_001288828.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	10263	11066	.	-	.	ID=gene-C9E96_RS02110;Name=cmoM;gbkey=Gene;gene=cmoM;gene_biotype=protein_coding;locus_tag=C9E96_RS02110;old_locus_tag=C9E96_02150
NZ_PYJX01000034.1	Protein Homology	CDS	10263	11066	.	-	0	ID=cds-WP_001154025.1;Parent=gene-C9E96_RS02110;Dbxref=GenBank:WP_001154025.1;Name=WP_001154025.1;gbkey=CDS;gene=cmoM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459966.1;locus_tag=C9E96_RS02110;product=tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM;protein_id=WP_001154025.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	11202	11978	.	+	.	ID=gene-C9E96_RS02115;Name=elyC;gbkey=Gene;gene=elyC;gene_biotype=protein_coding;locus_tag=C9E96_RS02115;old_locus_tag=C9E96_02155
NZ_PYJX01000034.1	Protein Homology	CDS	11202	11978	.	+	0	ID=cds-WP_000899554.1;Parent=gene-C9E96_RS02115;Dbxref=GenBank:WP_000899554.1;Name=WP_000899554.1;gbkey=CDS;gene=elyC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459965.1;locus_tag=C9E96_RS02115;product=envelope biogenesis factor ElyC;protein_id=WP_000899554.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	11958	12851	.	-	.	ID=gene-C9E96_RS02120;Name=C9E96_RS02120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02120;old_locus_tag=C9E96_02160
NZ_PYJX01000034.1	Protein Homology	CDS	11958	12851	.	-	0	ID=cds-WP_080204083.1;Parent=gene-C9E96_RS02120;Dbxref=GenBank:WP_080204083.1;Name=WP_080204083.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459964.1;locus_tag=C9E96_RS02120;product=YcbJ family phosphotransferase;protein_id=WP_080204083.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	13062	13808	.	-	.	ID=gene-C9E96_RS02130;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=C9E96_RS02130;old_locus_tag=C9E96_02165
NZ_PYJX01000034.1	Protein Homology	CDS	13062	13808	.	-	0	ID=cds-WP_000011576.1;Parent=gene-C9E96_RS02130;Dbxref=GenBank:WP_000011576.1;Name=WP_000011576.1;Ontology_term=GO:0009244,GO:0008690;gbkey=CDS;gene=kdsB;go_function=3-deoxy-manno-octulosonate cytidylyltransferase activity|0008690||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459963.1;locus_tag=C9E96_RS02130;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_000011576.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	13805	13987	.	-	.	ID=gene-C9E96_RS02135;Name=ycaR;gbkey=Gene;gene=ycaR;gene_biotype=protein_coding;locus_tag=C9E96_RS02135;old_locus_tag=C9E96_02170
NZ_PYJX01000034.1	Protein Homology	CDS	13805	13987	.	-	0	ID=cds-WP_000350061.1;Parent=gene-C9E96_RS02135;Dbxref=GenBank:WP_000350061.1;Name=WP_000350061.1;gbkey=CDS;gene=ycaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459962.1;locus_tag=C9E96_RS02135;product=protein YcaR;protein_id=WP_000350061.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	14039	15271	.	-	.	ID=gene-C9E96_RS02140;Name=C9E96_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02140;old_locus_tag=C9E96_02175
NZ_PYJX01000034.1	Protein Homology	CDS	14039	15271	.	-	0	ID=cds-WP_135493793.1;Parent=gene-C9E96_RS02140;Dbxref=GenBank:WP_135493793.1;Name=WP_135493793.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459961.1;locus_tag=C9E96_RS02140;product=winged helix-turn-helix domain-containing protein;protein_id=WP_135493793.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	15315	16292	.	-	.	ID=gene-C9E96_RS02145;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=C9E96_RS02145;old_locus_tag=C9E96_02180
NZ_PYJX01000034.1	Protein Homology	CDS	15315	16292	.	-	0	ID=cds-WP_135493795.1;Parent=gene-C9E96_RS02145;Dbxref=GenBank:WP_135493795.1;Name=WP_135493795.1;Ontology_term=GO:0009245,GO:0009029;gbkey=CDS;gene=lpxK;go_function=tetraacyldisaccharide 4'-kinase activity|0009029||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459960.1;locus_tag=C9E96_RS02145;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_135493795.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	16289	18037	.	-	.	ID=gene-C9E96_RS02150;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=C9E96_RS02150;old_locus_tag=C9E96_02185
NZ_PYJX01000034.1	Protein Homology	CDS	16289	18037	.	-	0	ID=cds-WP_000551246.1;Parent=gene-C9E96_RS02150;Dbxref=GenBank:WP_000551246.1;Name=WP_000551246.1;Ontology_term=GO:0055085,GO:0005524,GO:0034040,GO:0140359,GO:0016020;gbkey=CDS;gene=msbA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled lipid transmembrane transporter activity|0034040||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459959.1;locus_tag=C9E96_RS02150;product=lipid A ABC transporter ATP-binding protein/permease MsbA;protein_id=WP_000551246.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	18074	20338	.	-	.	ID=gene-C9E96_RS02155;Name=C9E96_RS02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02155;old_locus_tag=C9E96_02190
NZ_PYJX01000034.1	Protein Homology	CDS	18074	20338	.	-	0	ID=cds-WP_080204081.1;Parent=gene-C9E96_RS02155;Dbxref=GenBank:WP_080204081.1;Name=WP_080204081.1;Ontology_term=GO:0030420,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=establishment of competence for transformation|0030420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459958.1;locus_tag=C9E96_RS02155;product=ComEC family protein;protein_id=WP_080204081.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	20568	20852	.	-	.	ID=gene-C9E96_RS02160;Name=ihfB;gbkey=Gene;gene=ihfB;gene_biotype=protein_coding;locus_tag=C9E96_RS02160;old_locus_tag=C9E96_02195
NZ_PYJX01000034.1	Protein Homology	CDS	20568	20852	.	-	0	ID=cds-WP_000167332.1;Parent=gene-C9E96_RS02160;Dbxref=GenBank:WP_000167332.1;Name=WP_000167332.1;Ontology_term=GO:0006310,GO:0006355,GO:0006417,GO:0075713,GO:0003677,GO:0005694;gbkey=CDS;gene=ihfB;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA,regulation of translation|0006417||IEA,establishment of integrated proviral latency|0075713||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006819309.1;locus_tag=C9E96_RS02160;product=integration host factor subunit beta;protein_id=WP_000167332.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	21008	22681	.	-	.	ID=gene-C9E96_RS02165;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=C9E96_RS02165;old_locus_tag=C9E96_02200
NZ_PYJX01000034.1	Protein Homology	CDS	21008	22681	.	-	0	ID=cds-WP_000140324.1;Parent=gene-C9E96_RS02165;Dbxref=GenBank:WP_000140324.1;Name=WP_000140324.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsA;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123560.1;locus_tag=C9E96_RS02165;product=30S ribosomal protein S1;protein_id=WP_000140324.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	22795	23478	.	-	.	ID=gene-C9E96_RS02170;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=C9E96_RS02170;old_locus_tag=C9E96_02205
NZ_PYJX01000034.1	Protein Homology	CDS	22795	23478	.	-	0	ID=cds-WP_080204080.1;Parent=gene-C9E96_RS02170;Dbxref=GenBank:WP_080204080.1;Name=WP_080204080.1;Ontology_term=GO:0015949,GO:0004127,GO:0005524;gbkey=CDS;gene=cmk;go_function=(d)CMP kinase activity|0004127||IEA,ATP binding|0005524||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000125007.1;locus_tag=C9E96_RS02170;product=(d)CMP kinase;protein_id=WP_080204080.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	23651	24412	.	-	.	ID=gene-C9E96_RS02175;Name=C9E96_RS02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02175;old_locus_tag=C9E96_02210
NZ_PYJX01000034.1	Protein Homology	CDS	23651	24412	.	-	0	ID=cds-WP_000792301.1;Parent=gene-C9E96_RS02175;Dbxref=GenBank:WP_000792301.1;Name=WP_000792301.1;Ontology_term=GO:0004222,GO:0008237,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459954.1;locus_tag=C9E96_RS02175;product=M48 family metallopeptidase;protein_id=WP_000792301.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	24555	25838	.	-	.	ID=gene-C9E96_RS02180;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=C9E96_RS02180;old_locus_tag=C9E96_02215
NZ_PYJX01000034.1	Protein Homology	CDS	24555	25838	.	-	0	ID=cds-WP_080204079.1;Parent=gene-C9E96_RS02180;Dbxref=GenBank:WP_080204079.1;Name=WP_080204079.1;Ontology_term=GO:0009073,GO:0003866;gbkey=CDS;gene=aroA;go_function=3-phosphoshikimate 1-carboxyvinyltransferase activity|0003866||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459953.1;locus_tag=C9E96_RS02180;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_080204079.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	25909	26997	.	-	.	ID=gene-C9E96_RS02185;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=C9E96_RS02185;old_locus_tag=C9E96_02220
NZ_PYJX01000034.1	Protein Homology	CDS	25909	26997	.	-	0	ID=cds-WP_000079590.1;Parent=gene-C9E96_RS02185;Dbxref=GenBank:WP_000079590.1;Name=WP_000079590.1;Ontology_term=GO:0006564,GO:0003824,GO:0004648;gbkey=CDS;gene=serC;go_function=catalytic activity|0003824||IEA,O-phospho-L-serine:2-oxoglutarate aminotransferase activity|0004648||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459952.1;locus_tag=C9E96_RS02185;product=3-phosphoserine/phosphohydroxythreonine transaminase;protein_id=WP_000079590.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	27183	27875	.	-	.	ID=gene-C9E96_RS02190;Name=C9E96_RS02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02190;old_locus_tag=C9E96_02225
NZ_PYJX01000034.1	Protein Homology	CDS	27183	27875	.	-	0	ID=cds-WP_000642866.1;Parent=gene-C9E96_RS02190;Dbxref=GenBank:WP_000642866.1;Name=WP_000642866.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459951.1;locus_tag=C9E96_RS02190;product=DUF421 domain-containing protein;protein_id=WP_000642866.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	28012	29772	.	+	.	ID=gene-C9E96_RS02195;Name=ycaO;gbkey=Gene;gene=ycaO;gene_biotype=protein_coding;locus_tag=C9E96_RS02195;old_locus_tag=C9E96_02230
NZ_PYJX01000034.1	Protein Homology	CDS	28012	29772	.	+	0	ID=cds-WP_135493797.1;Parent=gene-C9E96_RS02195;Dbxref=GenBank:WP_135493797.1;Name=WP_135493797.1;gbkey=CDS;gene=ycaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459950.1;locus_tag=C9E96_RS02195;product=30S ribosomal protein S12 methylthiotransferase accessory factor YcaO;protein_id=WP_135493797.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	30178	31035	.	+	.	ID=gene-C9E96_RS02200;Name=focA;gbkey=Gene;gene=focA;gene_biotype=protein_coding;locus_tag=C9E96_RS02200;old_locus_tag=C9E96_02235
NZ_PYJX01000034.1	Protein Homology	CDS	30178	31035	.	+	0	ID=cds-WP_000642539.1;Parent=gene-C9E96_RS02200;Dbxref=GenBank:WP_000642539.1;Name=WP_000642539.1;gbkey=CDS;gene=focA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459949.1;locus_tag=C9E96_RS02200;product=formate transporter FocA;protein_id=WP_000642539.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	31095	33377	.	+	.	ID=gene-C9E96_RS02205;Name=pflB;gbkey=Gene;gene=pflB;gene_biotype=protein_coding;locus_tag=C9E96_RS02205;old_locus_tag=C9E96_02240
NZ_PYJX01000034.1	Protein Homology	CDS	31095	33377	.	+	0	ID=cds-WP_001292799.1;Parent=gene-C9E96_RS02205;Dbxref=GenBank:WP_001292799.1;Name=WP_001292799.1;Ontology_term=GO:0005975,GO:0008861,GO:0005737;gbkey=CDS;gene=pflB;go_component=cytoplasm|0005737||IEA;go_function=formate C-acetyltransferase activity|0008861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459948.1;locus_tag=C9E96_RS02205;product=formate C-acetyltransferase;protein_id=WP_001292799.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	33450	34409	.	-	.	ID=gene-C9E96_RS02210;Name=sopD2;gbkey=Gene;gene=sopD2;gene_biotype=protein_coding;locus_tag=C9E96_RS02210;old_locus_tag=C9E96_02245
NZ_PYJX01000034.1	Protein Homology	CDS	33450	34409	.	-	0	ID=cds-WP_001145570.1;Parent=gene-C9E96_RS02210;Dbxref=GenBank:WP_001145570.1;Name=WP_001145570.1;gbkey=CDS;gene=sopD2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459947.1;locus_tag=C9E96_RS02210;product=type III secretion system effector SopD2;protein_id=WP_001145570.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	pseudogene	34541	34866	.	+	.	ID=gene-C9E96_RS24140;Name=C9E96_RS24140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24140;pseudo=true
NZ_PYJX01000034.1	Protein Homology	CDS	34541	34866	.	+	0	ID=cds-C9E96_RS24140;Parent=gene-C9E96_RS24140;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459946.1;locus_tag=C9E96_RS24140;product=cytoplasmic protein;pseudo=true;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	34985	35782	.	+	.	ID=gene-C9E96_RS02220;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=C9E96_RS02220;old_locus_tag=C9E96_02255
NZ_PYJX01000034.1	Protein Homology	CDS	34985	35782	.	+	0	ID=cds-WP_000067928.1;Parent=gene-C9E96_RS02220;Dbxref=GenBank:WP_000067928.1;Name=WP_000067928.1;Ontology_term=GO:0043365,GO:0051539;gbkey=CDS;gene=pflA;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015696619.1;locus_tag=C9E96_RS02220;product=pyruvate formate lyase 1-activating protein;protein_id=WP_000067928.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	36075	37496	.	-	.	ID=gene-C9E96_RS02225;Name=C9E96_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02225;old_locus_tag=C9E96_02260
NZ_PYJX01000034.1	Protein Homology	CDS	36075	37496	.	-	0	ID=cds-WP_001134264.1;Parent=gene-C9E96_RS02225;Dbxref=GenBank:WP_001134264.1;Name=WP_001134264.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459944.1;locus_tag=C9E96_RS02225;product=APC family permease;protein_id=WP_001134264.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	37714	38862	.	-	.	ID=gene-C9E96_RS02230;Name=C9E96_RS02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02230;old_locus_tag=C9E96_02265
NZ_PYJX01000034.1	Protein Homology	CDS	37714	38862	.	-	0	ID=cds-WP_000109274.1;Parent=gene-C9E96_RS02230;Dbxref=GenBank:WP_000109274.1;Name=WP_000109274.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459943.1;locus_tag=C9E96_RS02230;product=MFS transporter;protein_id=WP_000109274.1;transl_table=11
NZ_PYJX01000034.1	RefSeq	gene	39212	40075	.	-	.	ID=gene-C9E96_RS02235;Name=C9E96_RS02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02235;old_locus_tag=C9E96_02270
NZ_PYJX01000034.1	Protein Homology	CDS	39212	40075	.	-	0	ID=cds-WP_000534681.1;Parent=gene-C9E96_RS02235;Dbxref=GenBank:WP_000534681.1;Name=WP_000534681.1;Ontology_term=GO:0009061,GO:0019645,GO:0009389,GO:0005886,GO:0009390;gbkey=CDS;go_component=plasma membrane|0005886||IEA,dimethyl sulfoxide reductase complex|0009390||IEA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA;go_process=anaerobic respiration|0009061||IEA,anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459942.1;locus_tag=C9E96_RS02235;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_000534681.1;transl_table=11
##sequence-region NZ_PYJX01000112.1 1 37126
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000112.1	RefSeq	region	1	37126	.	+	.	ID=NZ_PYJX01000112.1:1..37126;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000112.1	RefSeq	pseudogene	1	6238	.	-	.	ID=gene-C9E96_RS09420;Name=siiE;gbkey=Gene;gene=siiE;gene_biotype=pseudogene;locus_tag=C9E96_RS09420;old_locus_tag=C9E96_09630;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000112.1	Protein Homology	CDS	1	6238	.	-	0	ID=cds-C9E96_RS09420;Parent=gene-C9E96_RS09420;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=siiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463126.1;locus_tag=C9E96_RS09420;partial=true;product=non-fimbrial adhesin SiiE;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	6255	7532	.	-	.	ID=gene-C9E96_RS09425;Name=siiD;gbkey=Gene;gene=siiD;gene_biotype=protein_coding;locus_tag=C9E96_RS09425;old_locus_tag=C9E96_09635
NZ_PYJX01000112.1	Protein Homology	CDS	6255	7532	.	-	0	ID=cds-WP_001081935.1;Parent=gene-C9E96_RS09425;Dbxref=GenBank:WP_001081935.1;Name=WP_001081935.1;gbkey=CDS;gene=siiD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463125.1;locus_tag=C9E96_RS09425;product=SPI-4 type I secretion system protein SiiD;protein_id=WP_001081935.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	7529	8848	.	-	.	ID=gene-C9E96_RS09430;Name=siiC;gbkey=Gene;gene=siiC;gene_biotype=protein_coding;locus_tag=C9E96_RS09430;old_locus_tag=C9E96_09640
NZ_PYJX01000112.1	Protein Homology	CDS	7529	8848	.	-	0	ID=cds-WP_023993544.1;Parent=gene-C9E96_RS09430;Dbxref=GenBank:WP_023993544.1;Name=WP_023993544.1;gbkey=CDS;gene=siiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463124.1;locus_tag=C9E96_RS09430;product=SPI-4 type I secretion system protein SiiC;protein_id=WP_023993544.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	8838	10226	.	-	.	ID=gene-C9E96_RS09435;Name=C9E96_RS09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09435;old_locus_tag=C9E96_09645
NZ_PYJX01000112.1	Protein Homology	CDS	8838	10226	.	-	0	ID=cds-WP_000875193.1;Parent=gene-C9E96_RS09435;Dbxref=GenBank:WP_000875193.1;Name=WP_000875193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463123.1;locus_tag=C9E96_RS09435;product=MotA/TolQ/ExbB proton channel family protein;protein_id=WP_000875193.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	10223	10855	.	-	.	ID=gene-C9E96_RS09440;Name=siiA;gbkey=Gene;gene=siiA;gene_biotype=protein_coding;locus_tag=C9E96_RS09440;old_locus_tag=C9E96_09650
NZ_PYJX01000112.1	Protein Homology	CDS	10223	10855	.	-	0	ID=cds-WP_000389245.1;Parent=gene-C9E96_RS09440;Dbxref=GenBank:WP_000389245.1;Name=WP_000389245.1;gbkey=CDS;gene=siiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463122.1;locus_tag=C9E96_RS09440;product=SPI-4 type I secretion system auxiliary protein SiiA;protein_id=WP_000389245.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	12044	12574	.	-	.	ID=gene-C9E96_RS09445;Name=ssb1;gbkey=Gene;gene=ssb1;gene_biotype=protein_coding;locus_tag=C9E96_RS09445;old_locus_tag=C9E96_09660
NZ_PYJX01000112.1	Protein Homology	CDS	12044	12574	.	-	0	ID=cds-WP_000168322.1;Parent=gene-C9E96_RS09445;Dbxref=GenBank:WP_000168322.1;Name=WP_000168322.1;gbkey=CDS;gene=ssb1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463121.1;locus_tag=C9E96_RS09445;product=single-stranded DNA-binding protein SSB1;protein_id=WP_000168322.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	12822	15647	.	+	.	ID=gene-C9E96_RS09455;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=C9E96_RS09455;old_locus_tag=C9E96_09670
NZ_PYJX01000112.1	Protein Homology	CDS	12822	15647	.	+	0	ID=cds-WP_000357725.1;Parent=gene-C9E96_RS09455;Dbxref=GenBank:WP_000357725.1;Name=WP_000357725.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463119.1;locus_tag=C9E96_RS09455;product=excinuclease ABC subunit UvrA;protein_id=WP_000357725.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	15779	16234	.	+	.	ID=gene-C9E96_RS09460;Name=C9E96_RS09460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09460;old_locus_tag=C9E96_09675
NZ_PYJX01000112.1	Protein Homology	CDS	15779	16234	.	+	0	ID=cds-WP_000432197.1;Parent=gene-C9E96_RS09460;Dbxref=GenBank:WP_000432197.1;Name=WP_000432197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463118.1;locus_tag=C9E96_RS09460;product=hypothetical protein;protein_id=WP_000432197.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	16221	16559	.	+	.	ID=gene-C9E96_RS09465;Name=C9E96_RS09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09465;old_locus_tag=C9E96_09680
NZ_PYJX01000112.1	Protein Homology	CDS	16221	16559	.	+	0	ID=cds-WP_000146587.1;Parent=gene-C9E96_RS09465;Dbxref=GenBank:WP_000146587.1;Name=WP_000146587.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463117.1;locus_tag=C9E96_RS09465;product=hypothetical protein;protein_id=WP_000146587.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	16560	16916	.	-	.	ID=gene-C9E96_RS09470;Name=C9E96_RS09470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09470;old_locus_tag=C9E96_09685
NZ_PYJX01000112.1	Protein Homology	CDS	16560	16916	.	-	0	ID=cds-WP_000155663.1;Parent=gene-C9E96_RS09470;Dbxref=GenBank:WP_000155663.1;Name=WP_000155663.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463116.1;locus_tag=C9E96_RS09470;product=MmcQ/YjbR family DNA-binding protein;protein_id=WP_000155663.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	16919	17335	.	-	.	ID=gene-C9E96_RS09475;Name=C9E96_RS09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09475;old_locus_tag=C9E96_09690
NZ_PYJX01000112.1	Protein Homology	CDS	16919	17335	.	-	0	ID=cds-WP_000270392.1;Parent=gene-C9E96_RS09475;Dbxref=GenBank:WP_000270392.1;Name=WP_000270392.1;Ontology_term=GO:0003824,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463115.1;locus_tag=C9E96_RS09475;product=secondary thiamine-phosphate synthase enzyme YjbQ;protein_id=WP_000270392.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	17464	18177	.	-	.	ID=gene-C9E96_RS09480;Name=aphA;gbkey=Gene;gene=aphA;gene_biotype=protein_coding;locus_tag=C9E96_RS09480;old_locus_tag=C9E96_09695
NZ_PYJX01000112.1	Protein Homology	CDS	17464	18177	.	-	0	ID=cds-WP_000724431.1;Parent=gene-C9E96_RS09480;Dbxref=GenBank:WP_000724431.1;Name=WP_000724431.1;Ontology_term=GO:0003993,GO:0030288;gbkey=CDS;gene=aphA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=acid phosphatase activity|0003993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463114.1;locus_tag=C9E96_RS09480;product=acid phosphatase AphA;protein_id=WP_000724431.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	18364	19557	.	-	.	ID=gene-C9E96_RS09485;Name=tyrB;gbkey=Gene;gene=tyrB;gene_biotype=protein_coding;locus_tag=C9E96_RS09485;old_locus_tag=C9E96_09705
NZ_PYJX01000112.1	Protein Homology	CDS	18364	19557	.	-	0	ID=cds-WP_000486914.1;Parent=gene-C9E96_RS09485;Dbxref=GenBank:WP_000486914.1;Name=WP_000486914.1;gbkey=CDS;gene=tyrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463113.1;locus_tag=C9E96_RS09485;product=aromatic amino acid transaminase;protein_id=WP_000486914.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	19743	20822	.	-	.	ID=gene-C9E96_RS09490;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=C9E96_RS09490;old_locus_tag=C9E96_09710
NZ_PYJX01000112.1	Protein Homology	CDS	19743	20822	.	-	0	ID=cds-WP_001147297.1;Parent=gene-C9E96_RS09490;Dbxref=GenBank:WP_001147297.1;Name=WP_001147297.1;Ontology_term=GO:0006522,GO:0009252,GO:0008784;gbkey=CDS;gene=alr;go_function=alanine racemase activity|0008784||IEA;go_process=alanine metabolic process|0006522||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463112.1;locus_tag=C9E96_RS09490;product=alanine racemase;protein_id=WP_001147297.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	20854	22269	.	-	.	ID=gene-C9E96_RS09495;Name=dnaB;gbkey=Gene;gene=dnaB;gene_biotype=protein_coding;locus_tag=C9E96_RS09495;old_locus_tag=C9E96_09715
NZ_PYJX01000112.1	Protein Homology	CDS	20854	22269	.	-	0	ID=cds-WP_000918353.1;Parent=gene-C9E96_RS09495;Dbxref=GenBank:WP_000918353.1;Name=WP_000918353.1;gbkey=CDS;gene=dnaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463111.1;locus_tag=C9E96_RS09495;product=replicative DNA helicase;protein_id=WP_000918353.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	22334	23317	.	+	.	ID=gene-C9E96_RS09500;Name=C9E96_RS09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09500;old_locus_tag=C9E96_09720
NZ_PYJX01000112.1	Protein Homology	CDS	22334	23317	.	+	0	ID=cds-WP_000235550.1;Parent=gene-C9E96_RS09500;Dbxref=GenBank:WP_000235550.1;Name=WP_000235550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463110.1;locus_tag=C9E96_RS09500;product=quinone oxidoreductase;protein_id=WP_000235550.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	23492	23734	.	-	.	ID=gene-C9E96_RS09505;Name=pspG;gbkey=Gene;gene=pspG;gene_biotype=protein_coding;locus_tag=C9E96_RS09505;old_locus_tag=C9E96_09725
NZ_PYJX01000112.1	Protein Homology	CDS	23492	23734	.	-	0	ID=cds-WP_000891414.1;Parent=gene-C9E96_RS09505;Dbxref=GenBank:WP_000891414.1;Name=WP_000891414.1;gbkey=CDS;gene=pspG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463109.1;locus_tag=C9E96_RS09505;product=envelope stress response protein PspG;protein_id=WP_000891414.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	23902	24900	.	-	.	ID=gene-C9E96_RS09510;Name=dusA;gbkey=Gene;gene=dusA;gene_biotype=protein_coding;locus_tag=C9E96_RS09510;old_locus_tag=C9E96_09730
NZ_PYJX01000112.1	Protein Homology	CDS	23902	24900	.	-	0	ID=cds-WP_135369826.1;Parent=gene-C9E96_RS09510;Dbxref=GenBank:WP_135369826.1;Name=WP_135369826.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusA;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463108.1;locus_tag=C9E96_RS09510;product=tRNA dihydrouridine(20/20a) synthase DusA;protein_id=WP_135369826.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	24988	26298	.	-	.	ID=gene-C9E96_RS09515;Name=C9E96_RS09515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09515;old_locus_tag=C9E96_09735
NZ_PYJX01000112.1	Protein Homology	CDS	24988	26298	.	-	0	ID=cds-WP_001039342.1;Parent=gene-C9E96_RS09515;Dbxref=GenBank:WP_001039342.1;Name=WP_001039342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463107.1;locus_tag=C9E96_RS09515;product=conjugal transfer protein TraF;protein_id=WP_001039342.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	26545	27060	.	+	.	ID=gene-C9E96_RS09520;Name=zur;gbkey=Gene;gene=zur;gene_biotype=protein_coding;locus_tag=C9E96_RS09520;old_locus_tag=C9E96_09740
NZ_PYJX01000112.1	Protein Homology	CDS	26545	27060	.	+	0	ID=cds-WP_000416271.1;Parent=gene-C9E96_RS09520;Dbxref=GenBank:WP_000416271.1;Name=WP_000416271.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=zur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463106.1;locus_tag=C9E96_RS09520;product=zinc uptake transcriptional repressor Zur;protein_id=WP_000416271.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	27159	27368	.	-	.	ID=gene-C9E96_RS09525;Name=C9E96_RS09525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09525;old_locus_tag=C9E96_09745
NZ_PYJX01000112.1	Protein Homology	CDS	27159	27368	.	-	0	ID=cds-WP_001030592.1;Parent=gene-C9E96_RS09525;Dbxref=GenBank:WP_001030592.1;Name=WP_001030592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313055.1;locus_tag=C9E96_RS09525;product=CsbD family protein;protein_id=WP_001030592.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	27390	27503	.	-	.	ID=gene-C9E96_RS09530;Name=C9E96_RS09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09530;old_locus_tag=C9E96_09750
NZ_PYJX01000112.1	Protein Homology	CDS	27390	27503	.	-	0	ID=cds-WP_001575282.1;Parent=gene-C9E96_RS09530;Dbxref=GenBank:WP_001575282.1;Name=WP_001575282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463104.1;locus_tag=C9E96_RS09530;product=hypothetical protein;protein_id=WP_001575282.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	27500	28825	.	-	.	ID=gene-C9E96_RS09535;Name=dinF;gbkey=Gene;gene=dinF;gene_biotype=protein_coding;locus_tag=C9E96_RS09535;old_locus_tag=C9E96_09755
NZ_PYJX01000112.1	Protein Homology	CDS	27500	28825	.	-	0	ID=cds-WP_001128112.1;Parent=gene-C9E96_RS09535;Dbxref=GenBank:WP_001128112.1;Name=WP_001128112.1;Ontology_term=GO:0055085,GO:0015297,GO:0042910,GO:0016020;gbkey=CDS;gene=dinF;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA,xenobiotic transmembrane transporter activity|0042910||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463103.1;locus_tag=C9E96_RS09535;product=MATE family efflux transporter DinF;protein_id=WP_001128112.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	29004	29612	.	-	.	ID=gene-C9E96_RS09540;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=C9E96_RS09540;old_locus_tag=C9E96_09760
NZ_PYJX01000112.1	Protein Homology	CDS	29004	29612	.	-	0	ID=cds-WP_000646079.1;Parent=gene-C9E96_RS09540;Dbxref=GenBank:WP_000646079.1;Name=WP_000646079.1;Ontology_term=GO:0009432,GO:0045892,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=SOS response|0009432||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000646075.1;locus_tag=C9E96_RS09540;product=transcriptional repressor LexA;protein_id=WP_000646079.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	29721	30089	.	-	.	ID=gene-C9E96_RS09545;Name=C9E96_RS09545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09545;old_locus_tag=C9E96_09765
NZ_PYJX01000112.1	Protein Homology	CDS	29721	30089	.	-	0	ID=cds-WP_080219680.1;Parent=gene-C9E96_RS09545;Dbxref=GenBank:WP_080219680.1;Name=WP_080219680.1;Ontology_term=GO:0006654,GO:0008654,GO:0016310,GO:0004143,GO:0005524,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP-dependent diacylglycerol kinase activity|0004143||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=phosphatidic acid biosynthetic process|0006654||IEA,phospholipid biosynthetic process|0008654||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463101.1;locus_tag=C9E96_RS09545;product=diacylglycerol kinase;protein_id=WP_080219680.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	30260	32680	.	+	.	ID=gene-C9E96_RS09550;Name=plsB;gbkey=Gene;gene=plsB;gene_biotype=protein_coding;locus_tag=C9E96_RS09550;old_locus_tag=C9E96_09770
NZ_PYJX01000112.1	Protein Homology	CDS	30260	32680	.	+	0	ID=cds-WP_135494148.1;Parent=gene-C9E96_RS09550;Dbxref=GenBank:WP_135494148.1;Name=WP_135494148.1;Ontology_term=GO:0008654,GO:0004366;gbkey=CDS;gene=plsB;go_function=glycerol-3-phosphate O-acyltransferase activity|0004366||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463100.1;locus_tag=C9E96_RS09550;product=glycerol-3-phosphate 1-O-acyltransferase PlsB;protein_id=WP_135494148.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	32779	33651	.	-	.	ID=gene-C9E96_RS09555;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=C9E96_RS09555;old_locus_tag=C9E96_09775
NZ_PYJX01000112.1	Protein Homology	CDS	32779	33651	.	-	0	ID=cds-WP_000455248.1;Parent=gene-C9E96_RS09555;Dbxref=GenBank:WP_000455248.1;Name=WP_000455248.1;Ontology_term=GO:0006744,GO:0008412;gbkey=CDS;gene=ubiA;go_function=4-hydroxybenzoate polyprenyltransferase activity|0008412||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463099.1;locus_tag=C9E96_RS09555;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_000455248.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	33665	34162	.	-	.	ID=gene-C9E96_RS09560;Name=ubiC;gbkey=Gene;gene=ubiC;gene_biotype=protein_coding;locus_tag=C9E96_RS09560;old_locus_tag=C9E96_09780
NZ_PYJX01000112.1	Protein Homology	CDS	33665	34162	.	-	0	ID=cds-WP_000019219.1;Parent=gene-C9E96_RS09560;Dbxref=GenBank:WP_000019219.1;Name=WP_000019219.1;Ontology_term=GO:0008813;gbkey=CDS;gene=ubiC;go_function=chorismate lyase activity|0008813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463098.1;locus_tag=C9E96_RS09560;product=chorismate lyase;protein_id=WP_000019219.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	34343	35260	.	-	.	ID=gene-C9E96_RS09565;Name=malM;gbkey=Gene;gene=malM;gene_biotype=protein_coding;locus_tag=C9E96_RS09565;old_locus_tag=C9E96_09785
NZ_PYJX01000112.1	Protein Homology	CDS	34343	35260	.	-	0	ID=cds-WP_000782497.1;Parent=gene-C9E96_RS09565;Dbxref=GenBank:WP_000782497.1;Name=WP_000782497.1;Ontology_term=GO:0008643,GO:0042597;gbkey=CDS;gene=malM;go_component=periplasmic space|0042597||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463097.1;locus_tag=C9E96_RS09565;product=maltose operon protein MalM;protein_id=WP_000782497.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	35424	36782	.	-	.	ID=gene-C9E96_RS09570;Name=C9E96_RS09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09570;old_locus_tag=C9E96_09790
NZ_PYJX01000112.1	Protein Homology	CDS	35424	36782	.	-	0	ID=cds-WP_000973642.1;Parent=gene-C9E96_RS09570;Dbxref=GenBank:WP_000973642.1;Name=WP_000973642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463096.1;locus_tag=C9E96_RS09570;product=maltoporin;protein_id=WP_000973642.1;transl_table=11
NZ_PYJX01000112.1	RefSeq	gene	36871	37126	.	-	.	ID=gene-C9E96_RS09575;Name=C9E96_RS09575;end_range=37126,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09575;old_locus_tag=C9E96_09795;partial=true
NZ_PYJX01000112.1	Protein Homology	CDS	36871	37126	.	-	1	ID=cds-WP_135494150.1;Parent=gene-C9E96_RS09575;Dbxref=GenBank:WP_135494150.1;Name=WP_135494150.1;Ontology_term=GO:0055085,GO:0005524,GO:0022857,GO:0043190;end_range=37126,.;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463095.1;locus_tag=C9E96_RS09575;partial=true;product=TOBE domain-containing protein;protein_id=WP_135494150.1;transl_table=11
##sequence-region NZ_PYJX01000099.1 1 36728
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000099.1	RefSeq	region	1	36728	.	+	.	ID=NZ_PYJX01000099.1:1..36728;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000099.1	RefSeq	gene	1	79	.	+	.	ID=gene-C9E96_RS24510;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9E96_RS24510;partial=true;start_range=.,1
NZ_PYJX01000099.1	cmsearch	rRNA	1	79	.	+	.	ID=rna-C9E96_RS24510;Parent=gene-C9E96_RS24510;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS24510;partial=true;product=5S ribosomal RNA;start_range=.,1
NZ_PYJX01000099.1	cmsearch	exon	1	79	.	+	.	ID=exon-C9E96_RS24510-1;Parent=rna-C9E96_RS24510;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS24510;partial=true;product=5S ribosomal RNA;start_range=.,1
NZ_PYJX01000099.1	RefSeq	gene	133	209	.	+	.	ID=gene-C9E96_RS08530;Name=C9E96_RS08530;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08530;old_locus_tag=C9E96_08720
NZ_PYJX01000099.1	tRNAscan-SE	tRNA	133	209	.	+	.	ID=rna-C9E96_RS08530;Parent=gene-C9E96_RS08530;anticodon=(pos:167..169);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08530;product=tRNA-Asp
NZ_PYJX01000099.1	tRNAscan-SE	exon	133	209	.	+	.	ID=exon-C9E96_RS08530-1;Parent=rna-C9E96_RS08530;anticodon=(pos:167..169);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08530;product=tRNA-Asp
NZ_PYJX01000099.1	RefSeq	gene	218	293	.	+	.	ID=gene-C9E96_RS08535;Name=C9E96_RS08535;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08535;old_locus_tag=C9E96_08725
NZ_PYJX01000099.1	tRNAscan-SE	tRNA	218	293	.	+	.	ID=rna-C9E96_RS08535;Parent=gene-C9E96_RS08535;anticodon=(pos:251..253);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08535;product=tRNA-Trp
NZ_PYJX01000099.1	tRNAscan-SE	exon	218	293	.	+	.	ID=exon-C9E96_RS08535-1;Parent=rna-C9E96_RS08535;anticodon=(pos:251..253);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08535;product=tRNA-Trp
NZ_PYJX01000099.1	RefSeq	gene	394	1242	.	-	.	ID=gene-C9E96_RS08540;Name=hdfR;gbkey=Gene;gene=hdfR;gene_biotype=protein_coding;locus_tag=C9E96_RS08540;old_locus_tag=C9E96_08730
NZ_PYJX01000099.1	Protein Homology	CDS	394	1242	.	-	0	ID=cds-WP_001541181.1;Parent=gene-C9E96_RS08540;Dbxref=GenBank:WP_001541181.1;Name=WP_001541181.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=hdfR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462788.3;locus_tag=C9E96_RS08540;product=HTH-type transcriptional regulator HdfR;protein_id=WP_001541181.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	1349	1687	.	+	.	ID=gene-C9E96_RS08545;Name=maoP;gbkey=Gene;gene=maoP;gene_biotype=protein_coding;locus_tag=C9E96_RS08545;old_locus_tag=C9E96_08735
NZ_PYJX01000099.1	Protein Homology	CDS	1349	1687	.	+	0	ID=cds-WP_000840996.1;Parent=gene-C9E96_RS08545;Dbxref=GenBank:WP_000840996.1;Name=WP_000840996.1;gbkey=CDS;gene=maoP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462789.1;locus_tag=C9E96_RS08545;product=macrodomain Ori organization protein MaoP;protein_id=WP_000840996.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	1712	3232	.	-	.	ID=gene-C9E96_RS08550;Name=C9E96_RS08550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08550;old_locus_tag=C9E96_08740
NZ_PYJX01000099.1	Protein Homology	CDS	1712	3232	.	-	0	ID=cds-WP_023994477.1;Parent=gene-C9E96_RS08550;Dbxref=GenBank:WP_023994477.1;Name=WP_023994477.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462790.1;locus_tag=C9E96_RS08550;product=YifB family Mg chelatase-like AAA ATPase;protein_id=WP_023994477.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	3584	3682	.	+	.	ID=gene-C9E96_RS08560;Name=ilvL;gbkey=Gene;gene=ilvL;gene_biotype=protein_coding;locus_tag=C9E96_RS08560;old_locus_tag=C9E96_08745
NZ_PYJX01000099.1	Protein Homology	CDS	3584	3682	.	+	0	ID=cds-WP_001311244.1;Parent=gene-C9E96_RS08560;Dbxref=GenBank:WP_001311244.1;Name=WP_001311244.1;Ontology_term=GO:0031556;gbkey=CDS;gene=ilvL;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312728.1;locus_tag=C9E96_RS08560;product=ilv operon leader peptide;protein_id=WP_001311244.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	3769	3819	.	+	.	ID=gene-C9E96_RS24025;Name=ilvX;gbkey=Gene;gene=ilvX;gene_biotype=protein_coding;locus_tag=C9E96_RS24025
NZ_PYJX01000099.1	Protein Homology	CDS	3769	3819	.	+	0	ID=cds-WP_192930503.1;Parent=gene-C9E96_RS24025;Dbxref=GenBank:WP_192930503.1;Name=WP_192930503.1;gbkey=CDS;gene=ilvX;inference=COORDINATES: protein motif:HMM:NF038286.1;locus_tag=C9E96_RS24025;product=peptide IlvX;protein_id=WP_192930503.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	3822	5468	.	+	.	ID=gene-C9E96_RS08565;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;locus_tag=C9E96_RS08565;old_locus_tag=C9E96_08750
NZ_PYJX01000099.1	Protein Homology	CDS	3822	5468	.	+	0	ID=cds-WP_001012555.1;Parent=gene-C9E96_RS08565;Dbxref=GenBank:WP_001012555.1;Name=WP_001012555.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvG;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001012636.1;locus_tag=C9E96_RS08565;product=acetolactate synthase 2 catalytic subunit;protein_id=WP_001012555.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	5465	5728	.	+	.	ID=gene-C9E96_RS08570;Name=ilvM;gbkey=Gene;gene=ilvM;gene_biotype=protein_coding;locus_tag=C9E96_RS08570;old_locus_tag=C9E96_08755
NZ_PYJX01000099.1	Protein Homology	CDS	5465	5728	.	+	0	ID=cds-WP_000983260.1;Parent=gene-C9E96_RS08570;Dbxref=GenBank:WP_000983260.1;Name=WP_000983260.1;gbkey=CDS;gene=ilvM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312730.1;locus_tag=C9E96_RS08570;product=acetolactate synthase 2 small subunit;protein_id=WP_000983260.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	5746	6675	.	+	.	ID=gene-C9E96_RS08575;Name=ilvE;gbkey=Gene;gene=ilvE;gene_biotype=protein_coding;locus_tag=C9E96_RS08575;old_locus_tag=C9E96_08760
NZ_PYJX01000099.1	Protein Homology	CDS	5746	6675	.	+	0	ID=cds-WP_000208532.1;Parent=gene-C9E96_RS08575;Dbxref=GenBank:WP_000208532.1;Name=WP_000208532.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;gene=ilvE;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462794.1;locus_tag=C9E96_RS08575;product=branched-chain-amino-acid transaminase;protein_id=WP_000208532.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	6835	8685	.	+	.	ID=gene-C9E96_RS08580;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=C9E96_RS08580;old_locus_tag=C9E96_08765
NZ_PYJX01000099.1	Protein Homology	CDS	6835	8685	.	+	0	ID=cds-WP_001127429.1;Parent=gene-C9E96_RS08580;Dbxref=GenBank:WP_001127429.1;Name=WP_001127429.1;Ontology_term=GO:0009082,GO:0004160;gbkey=CDS;gene=ilvD;go_function=dihydroxy-acid dehydratase activity|0004160||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133366.1;locus_tag=C9E96_RS08580;product=dihydroxy-acid dehydratase;protein_id=WP_001127429.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	8688	10232	.	+	.	ID=gene-C9E96_RS08585;Name=ilvA;gbkey=Gene;gene=ilvA;gene_biotype=protein_coding;locus_tag=C9E96_RS08585;old_locus_tag=C9E96_08770
NZ_PYJX01000099.1	Protein Homology	CDS	8688	10232	.	+	0	ID=cds-WP_001518457.1;Parent=gene-C9E96_RS08585;Dbxref=GenBank:WP_001518457.1;Name=WP_001518457.1;Ontology_term=GO:0009097,GO:0004794;gbkey=CDS;gene=ilvA;go_function=threonine deaminase activity|0004794||IEA;go_process=isoleucine biosynthetic process|0009097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462796.1;locus_tag=C9E96_RS08585;product=threonine ammonia-lyase%2C biosynthetic;protein_id=WP_001518457.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	10514	10831	.	+	.	ID=gene-C9E96_RS08590;Name=C9E96_RS08590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08590;old_locus_tag=C9E96_08775
NZ_PYJX01000099.1	Protein Homology	CDS	10514	10831	.	+	0	ID=cds-WP_023994053.1;Parent=gene-C9E96_RS08590;Dbxref=GenBank:WP_023994053.1;Name=WP_023994053.1;Ontology_term=GO:0004519,GO:0090729,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=endonuclease activity|0004519||IEA,toxin activity|0090729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462797.1;locus_tag=C9E96_RS08590;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_023994053.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	10828	11169	.	+	.	ID=gene-C9E96_RS08595;Name=C9E96_RS08595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08595;old_locus_tag=C9E96_08780
NZ_PYJX01000099.1	Protein Homology	CDS	10828	11169	.	+	0	ID=cds-WP_000560824.1;Parent=gene-C9E96_RS08595;Dbxref=GenBank:WP_000560824.1;Name=WP_000560824.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462798.1;locus_tag=C9E96_RS08595;product=helix-turn-helix domain-containing protein;protein_id=WP_000560824.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	11172	12059	.	-	.	ID=gene-C9E96_RS08600;Name=ilvY;gbkey=Gene;gene=ilvY;gene_biotype=protein_coding;locus_tag=C9E96_RS08600;old_locus_tag=C9E96_08785
NZ_PYJX01000099.1	Protein Homology	CDS	11172	12059	.	-	0	ID=cds-WP_000365798.1;Parent=gene-C9E96_RS08600;Dbxref=GenBank:WP_000365798.1;Name=WP_000365798.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ilvY;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462799.1;locus_tag=C9E96_RS08600;product=HTH-type transcriptional activator IlvY;protein_id=WP_000365798.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	12224	13699	.	+	.	ID=gene-C9E96_RS08605;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=C9E96_RS08605;old_locus_tag=C9E96_08790
NZ_PYJX01000099.1	Protein Homology	CDS	12224	13699	.	+	0	ID=cds-WP_000024943.1;Parent=gene-C9E96_RS08605;Dbxref=GenBank:WP_000024943.1;Name=WP_000024943.1;Ontology_term=GO:0009082,GO:0004455;gbkey=CDS;gene=ilvC;go_function=ketol-acid reductoisomerase activity|0004455||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133363.1;locus_tag=C9E96_RS08605;product=ketol-acid reductoisomerase;protein_id=WP_000024943.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	13794	14075	.	-	.	ID=gene-C9E96_RS08610;Name=ppiC;gbkey=Gene;gene=ppiC;gene_biotype=protein_coding;locus_tag=C9E96_RS08610;old_locus_tag=C9E96_08795
NZ_PYJX01000099.1	Protein Homology	CDS	13794	14075	.	-	0	ID=cds-WP_001096806.1;Parent=gene-C9E96_RS08610;Dbxref=GenBank:WP_001096806.1;Name=WP_001096806.1;gbkey=CDS;gene=ppiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462801.1;locus_tag=C9E96_RS08610;product=peptidylprolyl isomerase PpiC;protein_id=WP_001096806.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	pseudogene	14269	14424	.	+	.	ID=gene-C9E96_RS24415;Name=C9E96_RS24415;end_range=14424,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24415;partial=true;pseudo=true
NZ_PYJX01000099.1	Protein Homology	CDS	14269	14424	.	+	0	ID=cds-C9E96_RS24415;Parent=gene-C9E96_RS24415;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=14424,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442089.1;locus_tag=C9E96_RS24415;partial=true;product=Crp/Fnr family transcriptional regulator;pseudo=true;transl_table=11
NZ_PYJX01000099.1	RefSeq	pseudogene	14376	14513	.	+	.	ID=gene-C9E96_RS08620;Name=C9E96_RS08620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS08620;old_locus_tag=C9E96_08805;partial=true;pseudo=true;start_range=.,14376
NZ_PYJX01000099.1	Protein Homology	CDS	14376	14513	.	+	0	ID=cds-C9E96_RS08620;Parent=gene-C9E96_RS08620;Note=involved in nicotinamide riboside transport%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506088.1;locus_tag=C9E96_RS08620;partial=true;product=nicotinamide riboside transporter PnuC;pseudo=true;start_range=.,14376;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	14613	16637	.	+	.	ID=gene-C9E96_RS08625;Name=rep;gbkey=Gene;gene=rep;gene_biotype=protein_coding;locus_tag=C9E96_RS08625;old_locus_tag=C9E96_08810
NZ_PYJX01000099.1	Protein Homology	CDS	14613	16637	.	+	0	ID=cds-WP_001238842.1;Parent=gene-C9E96_RS08625;Dbxref=GenBank:WP_001238842.1;Name=WP_001238842.1;Ontology_term=GO:0006260,GO:0003678;gbkey=CDS;gene=rep;go_function=DNA helicase activity|0003678||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462803.1;locus_tag=C9E96_RS08625;product=DNA helicase Rep;protein_id=WP_001238842.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	16677	18158	.	-	.	ID=gene-C9E96_RS08630;Name=gppA;gbkey=Gene;gene=gppA;gene_biotype=protein_coding;locus_tag=C9E96_RS08630;old_locus_tag=C9E96_08815
NZ_PYJX01000099.1	Protein Homology	CDS	16677	18158	.	-	0	ID=cds-WP_001089447.1;Parent=gene-C9E96_RS08630;Dbxref=GenBank:WP_001089447.1;Name=WP_001089447.1;Ontology_term=GO:0015974,GO:0008894;gbkey=CDS;gene=gppA;go_function=guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase activity|0008894||IEA;go_process=guanosine pentaphosphate catabolic process|0015974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462804.1;locus_tag=C9E96_RS08630;product=guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase;protein_id=WP_001089447.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	18277	19542	.	-	.	ID=gene-C9E96_RS08635;Name=rhlB;gbkey=Gene;gene=rhlB;gene_biotype=protein_coding;locus_tag=C9E96_RS08635;old_locus_tag=C9E96_08825
NZ_PYJX01000099.1	Protein Homology	CDS	18277	19542	.	-	0	ID=cds-WP_000047525.1;Parent=gene-C9E96_RS08635;Dbxref=GenBank:WP_000047525.1;Name=WP_000047525.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=rhlB;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462805.1;locus_tag=C9E96_RS08635;product=ATP-dependent RNA helicase RhlB;protein_id=WP_000047525.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	19686	20015	.	+	.	ID=gene-C9E96_RS08640;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=C9E96_RS08640;old_locus_tag=C9E96_08830
NZ_PYJX01000099.1	Protein Homology	CDS	19686	20015	.	+	0	ID=cds-WP_001280776.1;Parent=gene-C9E96_RS08640;Dbxref=GenBank:WP_001280776.1;Name=WP_001280776.1;Ontology_term=GO:0006662,GO:0015035;gbkey=CDS;gene=trxA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=glycerol ether metabolic process|0006662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017375425.1;locus_tag=C9E96_RS08640;product=thioredoxin TrxA;protein_id=WP_001280776.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	20263	20346	.	+	.	ID=gene-C9E96_RS24185;Name=C9E96_RS24185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24185
NZ_PYJX01000099.1	Protein Homology	CDS	20263	20346	.	+	0	ID=cds-WP_134820045.1;Parent=gene-C9E96_RS24185;Dbxref=GenBank:WP_134820045.1;Name=WP_134820045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312742.1;locus_tag=C9E96_RS24185;product=rho operon leader peptide;protein_id=WP_134820045.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	20434	21693	.	+	.	ID=gene-C9E96_RS08650;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=C9E96_RS08650;old_locus_tag=C9E96_08840
NZ_PYJX01000099.1	Protein Homology	CDS	20434	21693	.	+	0	ID=cds-WP_001054532.1;Parent=gene-C9E96_RS08650;Dbxref=GenBank:WP_001054532.1;Name=WP_001054532.1;Ontology_term=GO:0006353,GO:0003723,GO:0005524,GO:0008186;gbkey=CDS;gene=rho;go_function=RNA binding|0003723||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on RNA|0008186||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1;locus_tag=C9E96_RS08650;product=transcription termination factor Rho;protein_id=WP_001054532.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	21933	23036	.	+	.	ID=gene-C9E96_RS08660;Name=wecA;gbkey=Gene;gene=wecA;gene_biotype=protein_coding;locus_tag=C9E96_RS08660;old_locus_tag=C9E96_08850
NZ_PYJX01000099.1	Protein Homology	CDS	21933	23036	.	+	0	ID=cds-WP_001050948.1;Parent=gene-C9E96_RS08660;Dbxref=GenBank:WP_001050948.1;Name=WP_001050948.1;Ontology_term=GO:0009103,GO:0009246,GO:0000287,GO:0016780,GO:0030145,GO:0036380,GO:0009276,GO:0016020;gbkey=CDS;gene=wecA;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,membrane|0016020||IEA;go_function=magnesium ion binding|0000287||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA,manganese ion binding|0030145||IEA,UDP-N-acetylglucosamine-undecaprenyl-phosphate N-acetylglucosaminephosphotransferase activity|0036380||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418231.1;locus_tag=C9E96_RS08660;product=UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase;protein_id=WP_001050948.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	23048	24094	.	+	.	ID=gene-C9E96_RS08665;Name=wzzE;gbkey=Gene;gene=wzzE;gene_biotype=protein_coding;locus_tag=C9E96_RS08665;old_locus_tag=C9E96_08855
NZ_PYJX01000099.1	Protein Homology	CDS	23048	24094	.	+	0	ID=cds-WP_000193420.1;Parent=gene-C9E96_RS08665;Dbxref=GenBank:WP_000193420.1;Name=WP_000193420.1;Ontology_term=GO:0009103,GO:0009246,GO:0016020;gbkey=CDS;gene=wzzE;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462809.1;locus_tag=C9E96_RS08665;product=ECA polysaccharide chain length modulation protein;protein_id=WP_000193420.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	24150	25280	.	+	.	ID=gene-C9E96_RS08670;Name=wecB;gbkey=Gene;gene=wecB;gene_biotype=protein_coding;locus_tag=C9E96_RS08670;old_locus_tag=C9E96_08860
NZ_PYJX01000099.1	Protein Homology	CDS	24150	25280	.	+	0	ID=cds-WP_000866685.1;Parent=gene-C9E96_RS08670;Dbxref=GenBank:WP_000866685.1;Name=WP_000866685.1;Ontology_term=GO:0008761;gbkey=CDS;gene=wecB;go_function=UDP-N-acetylglucosamine 2-epimerase activity|0008761||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462810.1;locus_tag=C9E96_RS08670;product=non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_000866685.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	25277	26539	.	+	.	ID=gene-C9E96_RS08675;Name=wecC;gbkey=Gene;gene=wecC;gene_biotype=protein_coding;locus_tag=C9E96_RS08675;old_locus_tag=C9E96_08865
NZ_PYJX01000099.1	Protein Homology	CDS	25277	26539	.	+	0	ID=cds-WP_001653978.1;Parent=gene-C9E96_RS08675;Dbxref=GenBank:WP_001653978.1;Name=WP_001653978.1;Ontology_term=GO:0009246,GO:0051287,GO:0089714;gbkey=CDS;gene=wecC;go_function=NAD binding|0051287||IEA,UDP-N-acetyl-D-mannosamine dehydrogenase activity|0089714||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462811.1;locus_tag=C9E96_RS08675;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_001653978.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	26539	27606	.	+	.	ID=gene-C9E96_RS08680;Name=rffG;gbkey=Gene;gene=rffG;gene_biotype=protein_coding;locus_tag=C9E96_RS08680;old_locus_tag=C9E96_08870
NZ_PYJX01000099.1	Protein Homology	CDS	26539	27606	.	+	0	ID=cds-WP_000822143.1;Parent=gene-C9E96_RS08680;Dbxref=GenBank:WP_000822143.1;Name=WP_000822143.1;Ontology_term=GO:0009225,GO:0008460;gbkey=CDS;gene=rffG;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462812.1;locus_tag=C9E96_RS08680;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_000822143.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	27639	28520	.	+	.	ID=gene-C9E96_RS08685;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;locus_tag=C9E96_RS08685;old_locus_tag=C9E96_08875
NZ_PYJX01000099.1	Protein Homology	CDS	27639	28520	.	+	0	ID=cds-WP_000676077.1;Parent=gene-C9E96_RS08685;Dbxref=GenBank:WP_000676077.1;Name=WP_000676077.1;Ontology_term=GO:0000271,GO:0019305,GO:0008879;gbkey=CDS;gene=rfbA;go_function=glucose-1-phosphate thymidylyltransferase activity|0008879||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133346.1;locus_tag=C9E96_RS08685;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_000676077.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	28498	29175	.	+	.	ID=gene-C9E96_RS08690;Name=rffC;gbkey=Gene;gene=rffC;gene_biotype=protein_coding;gene_synonym=wecD;locus_tag=C9E96_RS08690;old_locus_tag=C9E96_08880
NZ_PYJX01000099.1	Protein Homology	CDS	28498	29175	.	+	0	ID=cds-WP_165450964.1;Parent=gene-C9E96_RS08690;Dbxref=GenBank:WP_165450964.1;Name=WP_165450964.1;Ontology_term=GO:0008080;gbkey=CDS;gene=rffC;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026256.2;locus_tag=C9E96_RS08690;product=dTDP-4-amino-4%2C6-dideoxy-D-galactose acyltransferase;protein_id=WP_165450964.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	29180	30310	.	+	.	ID=gene-C9E96_RS08695;Name=rffA;gbkey=Gene;gene=rffA;gene_biotype=protein_coding;gene_synonym=fcnA,wecE;locus_tag=C9E96_RS08695;old_locus_tag=C9E96_08885
NZ_PYJX01000099.1	Protein Homology	CDS	29180	30310	.	+	0	ID=cds-WP_000612080.1;Parent=gene-C9E96_RS08695;Dbxref=GenBank:WP_000612080.1;Name=WP_000612080.1;Ontology_term=GO:0009246,GO:0019180;gbkey=CDS;gene=rffA;go_function=dTDP-4-amino-4%2C6-dideoxygalactose transaminase activity|0019180||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462815.1;locus_tag=C9E96_RS08695;product=dTDP-4-amino-4%2C6-dideoxygalactose transaminase;protein_id=WP_000612080.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	30312	31562	.	+	.	ID=gene-C9E96_RS08700;Name=wzxE;gbkey=Gene;gene=wzxE;gene_biotype=protein_coding;locus_tag=C9E96_RS08700;old_locus_tag=C9E96_08890
NZ_PYJX01000099.1	Protein Homology	CDS	30312	31562	.	+	0	ID=cds-WP_000050285.1;Parent=gene-C9E96_RS08700;Dbxref=GenBank:WP_000050285.1;Name=WP_000050285.1;Ontology_term=GO:0009246,GO:0016020;gbkey=CDS;gene=wzxE;go_component=membrane|0016020||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462816.1;locus_tag=C9E96_RS08700;product=lipid III flippase WzxE;protein_id=WP_000050285.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	31559	32638	.	+	.	ID=gene-C9E96_RS08705;Name=C9E96_RS08705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08705;old_locus_tag=C9E96_08895
NZ_PYJX01000099.1	Protein Homology	CDS	31559	32638	.	+	0	ID=cds-WP_080204066.1;Parent=gene-C9E96_RS08705;Dbxref=GenBank:WP_080204066.1;Name=WP_080204066.1;Ontology_term=GO:0036065,GO:0008417;gbkey=CDS;go_function=fucosyltransferase activity|0008417||IEA;go_process=fucosylation|0036065||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462817.1;locus_tag=C9E96_RS08705;product=TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase;protein_id=WP_080204066.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	32635	33993	.	+	.	ID=gene-C9E96_RS08710;Name=wzyE;gbkey=Gene;gene=wzyE;gene_biotype=protein_coding;locus_tag=C9E96_RS08710;old_locus_tag=C9E96_08900
NZ_PYJX01000099.1	Protein Homology	CDS	32635	33993	.	+	0	ID=cds-WP_000055605.1;Parent=gene-C9E96_RS08710;Dbxref=GenBank:WP_000055605.1;Name=WP_000055605.1;Ontology_term=GO:0009246,GO:0016020;gbkey=CDS;gene=wzyE;go_component=membrane|0016020||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462818.1;locus_tag=C9E96_RS08710;product=ECA oligosaccharide polymerase;protein_id=WP_000055605.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	33990	34730	.	+	.	ID=gene-C9E96_RS08715;Name=wecG;gbkey=Gene;gene=wecG;gene_biotype=protein_coding;locus_tag=C9E96_RS08715;old_locus_tag=C9E96_08905
NZ_PYJX01000099.1	Protein Homology	CDS	33990	34730	.	+	0	ID=cds-WP_080204065.1;Parent=gene-C9E96_RS08715;Dbxref=GenBank:WP_080204065.1;Name=WP_080204065.1;Ontology_term=GO:0047241;gbkey=CDS;gene=wecG;go_function=lipopolysaccharide N-acetylmannosaminouronosyltransferase activity|0047241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462819.1;locus_tag=C9E96_RS08715;product=lipopolysaccharide N-acetylmannosaminouronosyltransferase;protein_id=WP_080204065.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	34937	36322	.	+	.	ID=gene-C9E96_RS08720;Name=thrP;gbkey=Gene;gene=thrP;gene_biotype=protein_coding;gene_synonym=yifK;locus_tag=C9E96_RS08720;old_locus_tag=C9E96_08910
NZ_PYJX01000099.1	Protein Homology	CDS	34937	36322	.	+	0	ID=cds-WP_000818378.1;Parent=gene-C9E96_RS08720;Dbxref=GenBank:WP_000818378.1;Name=WP_000818378.1;Ontology_term=GO:0015194,GO:0015195;gbkey=CDS;gene=thrP;go_function=L-serine transmembrane transporter activity|0015194||IEA,L-threonine transmembrane transporter activity|0015195||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462820.1;locus_tag=C9E96_RS08720;product=bifunctional threonine/serine APC transporter ThrP;protein_id=WP_000818378.1;transl_table=11
NZ_PYJX01000099.1	RefSeq	gene	36425	36501	.	+	.	ID=gene-C9E96_RS08725;Name=C9E96_RS08725;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08725;old_locus_tag=C9E96_08915
NZ_PYJX01000099.1	tRNAscan-SE	tRNA	36425	36501	.	+	.	ID=rna-C9E96_RS08725;Parent=gene-C9E96_RS08725;anticodon=(pos:36459..36461);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08725;product=tRNA-Arg
NZ_PYJX01000099.1	tRNAscan-SE	exon	36425	36501	.	+	.	ID=exon-C9E96_RS08725-1;Parent=rna-C9E96_RS08725;anticodon=(pos:36459..36461);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08725;product=tRNA-Arg
NZ_PYJX01000099.1	RefSeq	gene	36556	36631	.	+	.	ID=gene-C9E96_RS08730;Name=C9E96_RS08730;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS08730;old_locus_tag=C9E96_08920
NZ_PYJX01000099.1	tRNAscan-SE	tRNA	36556	36631	.	+	.	ID=rna-C9E96_RS08730;Parent=gene-C9E96_RS08730;anticodon=(pos:36589..36591);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08730;product=tRNA-His
NZ_PYJX01000099.1	tRNAscan-SE	exon	36556	36631	.	+	.	ID=exon-C9E96_RS08730-1;Parent=rna-C9E96_RS08730;anticodon=(pos:36589..36591);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS08730;product=tRNA-His
##sequence-region NZ_PYJX01000199.1 1 36387
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000199.1	RefSeq	region	1	36387	.	+	.	ID=NZ_PYJX01000199.1:1..36387;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000199.1	RefSeq	pseudogene	1	902	.	+	.	ID=gene-C9E96_RS19860;Name=C9E96_RS19860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS19860;old_locus_tag=C9E96_20375;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000199.1	Protein Homology	CDS	1	902	.	+	0	ID=cds-C9E96_RS19860;Parent=gene-C9E96_RS19860;Note=frameshifted%3B incomplete%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=C9E96_RS19860;partial=true;product=IS256 family transposase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	991	1992	.	-	.	ID=gene-C9E96_RS19865;Name=C9E96_RS19865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19865;old_locus_tag=C9E96_20380
NZ_PYJX01000199.1	Protein Homology	CDS	991	1992	.	-	0	ID=cds-WP_001013447.1;Parent=gene-C9E96_RS19865;Dbxref=GenBank:WP_001013447.1;Name=WP_001013447.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000676522.1;locus_tag=C9E96_RS19865;product=DUF1202 family protein;protein_id=WP_001013447.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	pseudogene	2330	3211	.	-	.	ID=gene-C9E96_RS19875;Name=C9E96_RS19875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS19875;old_locus_tag=C9E96_20390;pseudo=true
NZ_PYJX01000199.1	Protein Homology	CDS	2330	3211	.	-	0	ID=cds-C9E96_RS19875;Parent=gene-C9E96_RS19875;Note=frameshifted%3B internal stop;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612101.1;locus_tag=C9E96_RS19875;product=IS3 family transposase;pseudo=true;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	3328	3549	.	+	.	ID=gene-C9E96_RS19880;Name=C9E96_RS19880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19880;old_locus_tag=C9E96_20395
NZ_PYJX01000199.1	Protein Homology	CDS	3328	3549	.	+	0	ID=cds-WP_001576552.1;Parent=gene-C9E96_RS19880;Dbxref=GenBank:WP_001576552.1;Name=WP_001576552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463181.1;locus_tag=C9E96_RS19880;product=hypothetical protein;protein_id=WP_001576552.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	3814	4689	.	+	.	ID=gene-C9E96_RS19885;Name=C9E96_RS19885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19885;old_locus_tag=C9E96_20400
NZ_PYJX01000199.1	Protein Homology	CDS	3814	4689	.	+	0	ID=cds-WP_000921674.1;Parent=gene-C9E96_RS19885;Dbxref=GenBank:WP_000921674.1;Name=WP_000921674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463180.1;locus_tag=C9E96_RS19885;product=AraC family transcriptional regulator;protein_id=WP_000921674.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	4686	4973	.	+	.	ID=gene-C9E96_RS19890;Name=rtsB;gbkey=Gene;gene=rtsB;gene_biotype=protein_coding;locus_tag=C9E96_RS19890;old_locus_tag=C9E96_20405
NZ_PYJX01000199.1	Protein Homology	CDS	4686	4973	.	+	0	ID=cds-WP_001269916.1;Parent=gene-C9E96_RS19890;Dbxref=GenBank:WP_001269916.1;Name=WP_001269916.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rtsB;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463179.3;locus_tag=C9E96_RS19890;product=transcriptional regulator RtsB;protein_id=WP_001269916.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	4966	5274	.	-	.	ID=gene-C9E96_RS19895;Name=C9E96_RS19895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19895;old_locus_tag=C9E96_20410
NZ_PYJX01000199.1	Protein Homology	CDS	4966	5274	.	-	0	ID=cds-WP_072100833.1;Parent=gene-C9E96_RS19895;Dbxref=GenBank:WP_072100833.1;Name=WP_072100833.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001576549.1;locus_tag=C9E96_RS19895;product=ATP-binding cassette domain-containing protein;protein_id=WP_072100833.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	5186	5371	.	+	.	ID=gene-C9E96_RS19900;Name=C9E96_RS19900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19900;old_locus_tag=C9E96_20415
NZ_PYJX01000199.1	Protein Homology	CDS	5186	5371	.	+	0	ID=cds-WP_223151133.1;Parent=gene-C9E96_RS19900;Dbxref=GenBank:WP_223151133.1;Name=WP_223151133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463178.1;locus_tag=C9E96_RS19900;product=hypothetical protein;protein_id=WP_223151133.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	5379	5648	.	+	.	ID=gene-C9E96_RS19905;Name=C9E96_RS19905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19905;old_locus_tag=C9E96_20420
NZ_PYJX01000199.1	Protein Homology	CDS	5379	5648	.	+	0	ID=cds-WP_077677837.1;Parent=gene-C9E96_RS19905;Dbxref=GenBank:WP_077677837.1;Name=WP_077677837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463177.1;locus_tag=C9E96_RS19905;product=hypothetical protein;protein_id=WP_077677837.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	5943	6848	.	-	.	ID=gene-C9E96_RS19910;Name=C9E96_RS19910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19910;old_locus_tag=C9E96_20425
NZ_PYJX01000199.1	Protein Homology	CDS	5943	6848	.	-	0	ID=cds-WP_001268198.1;Parent=gene-C9E96_RS19910;Dbxref=GenBank:WP_001268198.1;Name=WP_001268198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463175.1;locus_tag=C9E96_RS19910;product=SdiA-regulated domain-containing protein;protein_id=WP_001268198.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	pseudogene	7152	8552	.	+	.	ID=gene-C9E96_RS19915;Name=C9E96_RS19915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS19915;old_locus_tag=C9E96_20430;pseudo=true
NZ_PYJX01000199.1	Protein Homology	CDS	7152	8552	.	+	0	ID=cds-C9E96_RS19915;Parent=gene-C9E96_RS19915;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463174.1;locus_tag=C9E96_RS19915;product=DUF7594 domain-containing protein;pseudo=true;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	8636	9229	.	-	.	ID=gene-C9E96_RS19920;Name=C9E96_RS19920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19920;old_locus_tag=C9E96_20435
NZ_PYJX01000199.1	Protein Homology	CDS	8636	9229	.	-	0	ID=cds-WP_023993532.1;Parent=gene-C9E96_RS19920;Dbxref=GenBank:WP_023993532.1;Name=WP_023993532.1;Ontology_term=GO:0061077;gbkey=CDS;go_process=chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001629474.1;locus_tag=C9E96_RS19920;product=TorD/DmsD family molecular chaperone;protein_id=WP_023993532.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	9304	10077	.	-	.	ID=gene-C9E96_RS19925;Name=C9E96_RS19925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19925;old_locus_tag=C9E96_20440
NZ_PYJX01000199.1	Protein Homology	CDS	9304	10077	.	-	0	ID=cds-WP_000544929.1;Parent=gene-C9E96_RS19925;Dbxref=GenBank:WP_000544929.1;Name=WP_000544929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463172.1;locus_tag=C9E96_RS19925;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_000544929.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	10070	10696	.	-	.	ID=gene-C9E96_RS19930;Name=C9E96_RS19930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19930;old_locus_tag=C9E96_20445
NZ_PYJX01000199.1	Protein Homology	CDS	10070	10696	.	-	0	ID=cds-WP_000816143.1;Parent=gene-C9E96_RS19930;Dbxref=GenBank:WP_000816143.1;Name=WP_000816143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463171.1;locus_tag=C9E96_RS19930;product=DMSO/selenate family reductase complex B subunit;protein_id=WP_000816143.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	10710	13139	.	-	.	ID=gene-C9E96_RS19935;Name=C9E96_RS19935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19935;old_locus_tag=C9E96_20450
NZ_PYJX01000199.1	Protein Homology	CDS	10710	13139	.	-	0	ID=cds-WP_167852900.1;Parent=gene-C9E96_RS19935;Dbxref=GenBank:WP_167852900.1;Name=WP_167852900.1;Ontology_term=GO:0009389,GO:0030151,GO:0051539;gbkey=CDS;go_function=dimethyl sulfoxide reductase activity|0009389||IEA,molybdenum ion binding|0030151||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000403483.1;locus_tag=C9E96_RS19935;product=DMSO/selenate family reductase complex A subunit;protein_id=WP_167852900.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	13495	15126	.	+	.	ID=gene-C9E96_RS19940;Name=C9E96_RS19940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19940;old_locus_tag=C9E96_20455
NZ_PYJX01000199.1	Protein Homology	CDS	13495	15126	.	+	0	ID=cds-WP_000682894.1;Parent=gene-C9E96_RS19940;Dbxref=GenBank:WP_000682894.1;Name=WP_000682894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463169.1;locus_tag=C9E96_RS19940;product=sensor histidine kinase;protein_id=WP_000682894.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	15123	15842	.	+	.	ID=gene-C9E96_RS19945;Name=dcuR;gbkey=Gene;gene=dcuR;gene_biotype=protein_coding;locus_tag=C9E96_RS19945;old_locus_tag=C9E96_20460
NZ_PYJX01000199.1	Protein Homology	CDS	15123	15842	.	+	0	ID=cds-WP_000611307.1;Parent=gene-C9E96_RS19945;Dbxref=GenBank:WP_000611307.1;Name=WP_000611307.1;Ontology_term=GO:0000160,GO:0003700;gbkey=CDS;gene=dcuR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463168.1;locus_tag=C9E96_RS19945;product=two-component system response regulator DcuR;protein_id=WP_000611307.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	16159	16425	.	+	.	ID=gene-C9E96_RS19950;Name=C9E96_RS19950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19950;old_locus_tag=C9E96_20465
NZ_PYJX01000199.1	Protein Homology	CDS	16159	16425	.	+	0	ID=cds-WP_024156601.1;Parent=gene-C9E96_RS19950;Dbxref=GenBank:WP_024156601.1;Name=WP_024156601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463167.1;locus_tag=C9E96_RS19950;product=hypothetical protein;protein_id=WP_024156601.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	16572	17912	.	+	.	ID=gene-C9E96_RS19955;Name=dcuB;gbkey=Gene;gene=dcuB;gene_biotype=protein_coding;locus_tag=C9E96_RS19955;old_locus_tag=C9E96_20470
NZ_PYJX01000199.1	Protein Homology	CDS	16572	17912	.	+	0	ID=cds-WP_000899149.1;Parent=gene-C9E96_RS19955;Dbxref=GenBank:WP_000899149.1;Name=WP_000899149.1;gbkey=CDS;gene=dcuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463166.1;locus_tag=C9E96_RS19955;product=anaerobic C4-dicarboxylate transporter DcuB;protein_id=WP_000899149.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	18008	19654	.	+	.	ID=gene-C9E96_RS19960;Name=fumA;gbkey=Gene;gene=fumA;gene_biotype=protein_coding;locus_tag=C9E96_RS19960;old_locus_tag=C9E96_20475
NZ_PYJX01000199.1	Protein Homology	CDS	18008	19654	.	+	0	ID=cds-WP_000037190.1;Parent=gene-C9E96_RS19960;Dbxref=GenBank:WP_000037190.1;Name=WP_000037190.1;gbkey=CDS;gene=fumA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463165.1;locus_tag=C9E96_RS19960;product=class I fumarate hydratase FumA;protein_id=WP_000037190.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	19752	21182	.	-	.	ID=gene-C9E96_RS19965;Name=melB;gbkey=Gene;gene=melB;gene_biotype=protein_coding;locus_tag=C9E96_RS19965;old_locus_tag=C9E96_20480
NZ_PYJX01000199.1	Protein Homology	CDS	19752	21182	.	-	0	ID=cds-WP_000028070.1;Parent=gene-C9E96_RS19965;Dbxref=GenBank:WP_000028070.1;Name=WP_000028070.1;Ontology_term=GO:0006814,GO:0008643,GO:0015293,GO:0022857,GO:0016020;gbkey=CDS;gene=melB;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA,transmembrane transporter activity|0022857||IEA;go_process=sodium ion transport|0006814||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463164.1;locus_tag=C9E96_RS19965;product=melibiose:sodium transporter MelB;protein_id=WP_000028070.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	21266	22621	.	-	.	ID=gene-C9E96_RS19970;Name=melA;gbkey=Gene;gene=melA;gene_biotype=protein_coding;locus_tag=C9E96_RS19970;old_locus_tag=C9E96_20485
NZ_PYJX01000199.1	Protein Homology	CDS	21266	22621	.	-	0	ID=cds-WP_012219486.1;Parent=gene-C9E96_RS19970;Dbxref=GenBank:WP_012219486.1;Name=WP_012219486.1;gbkey=CDS;gene=melA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463163.1;locus_tag=C9E96_RS19970;product=alpha-galactosidase;protein_id=WP_012219486.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	22890	23822	.	+	.	ID=gene-C9E96_RS19975;Name=melR;gbkey=Gene;gene=melR;gene_biotype=protein_coding;locus_tag=C9E96_RS19975;old_locus_tag=C9E96_20490
NZ_PYJX01000199.1	Protein Homology	CDS	22890	23822	.	+	0	ID=cds-WP_000106992.1;Parent=gene-C9E96_RS19975;Dbxref=GenBank:WP_000106992.1;Name=WP_000106992.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=melR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463162.1;locus_tag=C9E96_RS19975;product=transcriptional regulator MelR;protein_id=WP_000106992.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	24055	26322	.	+	.	ID=gene-C9E96_RS19980;Name=adiA;gbkey=Gene;gene=adiA;gene_biotype=protein_coding;locus_tag=C9E96_RS19980;old_locus_tag=C9E96_20495
NZ_PYJX01000199.1	Protein Homology	CDS	24055	26322	.	+	0	ID=cds-WP_001538051.1;Parent=gene-C9E96_RS19980;Dbxref=GenBank:WP_001538051.1;Name=WP_001538051.1;Ontology_term=GO:0006520,GO:0016831;gbkey=CDS;gene=adiA;go_function=carboxy-lyase activity|0016831||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709824.2;locus_tag=C9E96_RS19980;product=arginine decarboxylase;protein_id=WP_001538051.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	26620	27381	.	+	.	ID=gene-C9E96_RS19985;Name=C9E96_RS19985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19985;old_locus_tag=C9E96_20500
NZ_PYJX01000199.1	Protein Homology	CDS	26620	27381	.	+	0	ID=cds-WP_135494521.1;Parent=gene-C9E96_RS19985;Dbxref=GenBank:WP_135494521.1;Name=WP_135494521.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463160.1;locus_tag=C9E96_RS19985;product=AraC family transcriptional regulator;protein_id=WP_135494521.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	27521	28858	.	+	.	ID=gene-C9E96_RS19990;Name=adiC;gbkey=Gene;gene=adiC;gene_biotype=protein_coding;locus_tag=C9E96_RS19990;old_locus_tag=C9E96_20505
NZ_PYJX01000199.1	Protein Homology	CDS	27521	28858	.	+	0	ID=cds-WP_000093130.1;Parent=gene-C9E96_RS19990;Dbxref=GenBank:WP_000093130.1;Name=WP_000093130.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=adiC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463159.1;locus_tag=C9E96_RS19990;product=arginine/agmatine antiporter;protein_id=WP_000093130.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	28992	30635	.	+	.	ID=gene-C9E96_RS19995;Name=eptA;gbkey=Gene;gene=eptA;gene_biotype=protein_coding;locus_tag=C9E96_RS19995;old_locus_tag=C9E96_20510
NZ_PYJX01000199.1	Protein Homology	CDS	28992	30635	.	+	0	ID=cds-WP_000919294.1;Parent=gene-C9E96_RS19995;Dbxref=GenBank:WP_000919294.1;Name=WP_000919294.1;Ontology_term=GO:0016772;gbkey=CDS;gene=eptA;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463158.1;locus_tag=C9E96_RS19995;product=phosphoethanolamine transferase EptA;protein_id=WP_000919294.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	30632	31300	.	+	.	ID=gene-C9E96_RS20000;Name=pmrA;gbkey=Gene;gene=pmrA;gene_biotype=protein_coding;locus_tag=C9E96_RS20000;old_locus_tag=C9E96_20515
NZ_PYJX01000199.1	Protein Homology	CDS	30632	31300	.	+	0	ID=cds-WP_000697899.1;Parent=gene-C9E96_RS20000;Dbxref=GenBank:WP_000697899.1;Name=WP_000697899.1;gbkey=CDS;gene=pmrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463157.1;locus_tag=C9E96_RS20000;product=two-component system response regulator PmrA;protein_id=WP_000697899.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	31310	32380	.	+	.	ID=gene-C9E96_RS20005;Name=pmrB;gbkey=Gene;gene=pmrB;gene_biotype=protein_coding;locus_tag=C9E96_RS20005;old_locus_tag=C9E96_20520
NZ_PYJX01000199.1	Protein Homology	CDS	31310	32380	.	+	0	ID=cds-WP_001212189.1;Parent=gene-C9E96_RS20005;Dbxref=GenBank:WP_001212189.1;Name=WP_001212189.1;gbkey=CDS;gene=pmrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463156.1;locus_tag=C9E96_RS20005;product=two-component system sensor histidine kinase PmrB;protein_id=WP_001212189.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	32388	32477	.	-	.	ID=gene-C9E96_RS20010;Name=pmrR;gbkey=Gene;gene=pmrR;gene_biotype=protein_coding;locus_tag=C9E96_RS20010;old_locus_tag=C9E96_20525
NZ_PYJX01000199.1	Protein Homology	CDS	32388	32477	.	-	0	ID=cds-WP_000844399.1;Parent=gene-C9E96_RS20010;Dbxref=GenBank:WP_000844399.1;Name=WP_000844399.1;gbkey=CDS;gene=pmrR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000844399.1;locus_tag=C9E96_RS20010;product=LpxT activity modulator PmrR;protein_id=WP_000844399.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	32547	34049	.	-	.	ID=gene-C9E96_RS20015;Name=proP;gbkey=Gene;gene=proP;gene_biotype=protein_coding;locus_tag=C9E96_RS20015;old_locus_tag=C9E96_20530
NZ_PYJX01000199.1	Protein Homology	CDS	32547	34049	.	-	0	ID=cds-WP_000919710.1;Parent=gene-C9E96_RS20015;Dbxref=GenBank:WP_000919710.1;Name=WP_000919710.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=proP;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463155.1;locus_tag=C9E96_RS20015;product=glycine betaine/L-proline transporter ProP;protein_id=WP_000919710.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	34517	34852	.	+	.	ID=gene-C9E96_RS20020;Name=C9E96_RS20020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20020;old_locus_tag=C9E96_20535
NZ_PYJX01000199.1	Protein Homology	CDS	34517	34852	.	+	0	ID=cds-WP_000056482.1;Parent=gene-C9E96_RS20020;Dbxref=GenBank:WP_000056482.1;Name=WP_000056482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463154.1;locus_tag=C9E96_RS20020;product=zinc ribbon domain-containing protein YjdM;protein_id=WP_000056482.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	34972	35415	.	+	.	ID=gene-C9E96_RS20025;Name=yjdN;gbkey=Gene;gene=yjdN;gene_biotype=protein_coding;locus_tag=C9E96_RS20025;old_locus_tag=C9E96_20540
NZ_PYJX01000199.1	Protein Homology	CDS	34972	35415	.	+	0	ID=cds-WP_001131305.1;Parent=gene-C9E96_RS20025;Dbxref=GenBank:WP_001131305.1;Name=WP_001131305.1;gbkey=CDS;gene=yjdN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463153.1;locus_tag=C9E96_RS20025;product=VOC family metalloprotein YjdN;protein_id=WP_001131305.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	gene	35567	36001	.	+	.	ID=gene-C9E96_RS20030;Name=phnO;gbkey=Gene;gene=phnO;gene_biotype=protein_coding;locus_tag=C9E96_RS20030;old_locus_tag=C9E96_20545
NZ_PYJX01000199.1	Protein Homology	CDS	35567	36001	.	+	0	ID=cds-WP_001674343.1;Parent=gene-C9E96_RS20030;Dbxref=GenBank:WP_001674343.1;Name=WP_001674343.1;gbkey=CDS;gene=phnO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418517.1;locus_tag=C9E96_RS20030;product=aminoalkylphosphonate N-acetyltransferase;protein_id=WP_001674343.1;transl_table=11
NZ_PYJX01000199.1	RefSeq	pseudogene	36259	36387	.	+	.	ID=gene-C9E96_RS20035;Name=C9E96_RS20035;end_range=36387,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS20035;old_locus_tag=C9E96_20550;partial=true;pseudo=true
NZ_PYJX01000199.1	Protein Homology	CDS	36259	36387	.	+	0	ID=cds-C9E96_RS20035;Parent=gene-C9E96_RS20035;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=36387,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463151.1;locus_tag=C9E96_RS20035;partial=true;product=aspartyl/asparaginyl beta-hydroxylase domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000232.1 1 35917
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000232.1	RefSeq	region	1	35917	.	+	.	ID=NZ_PYJX01000232.1:1..35917;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000232.1	RefSeq	gene	1	194	.	-	.	ID=gene-C9E96_RS22270;Name=C9E96_RS22270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22270;old_locus_tag=C9E96_22830;partial=true;start_range=.,1
NZ_PYJX01000232.1	Protein Homology	CDS	1	194	.	-	0	ID=cds-WP_001680678.1;Parent=gene-C9E96_RS22270;Dbxref=GenBank:WP_001680678.1;Name=WP_001680678.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462719.1;locus_tag=C9E96_RS22270;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_001680678.1;start_range=.,1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	215	817	.	-	.	ID=gene-C9E96_RS22275;Name=napC;gbkey=Gene;gene=napC;gene_biotype=protein_coding;locus_tag=C9E96_RS22275;old_locus_tag=C9E96_22835
NZ_PYJX01000232.1	Protein Homology	CDS	215	817	.	-	0	ID=cds-WP_000431778.1;Parent=gene-C9E96_RS22275;Dbxref=GenBank:WP_000431778.1;Name=WP_000431778.1;gbkey=CDS;gene=napC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461198.1;locus_tag=C9E96_RS22275;product=cytochrome c-type protein NapC;protein_id=WP_000431778.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	827	1276	.	-	.	ID=gene-C9E96_RS22280;Name=napB;gbkey=Gene;gene=napB;gene_biotype=protein_coding;locus_tag=C9E96_RS22280;old_locus_tag=C9E96_22840
NZ_PYJX01000232.1	Protein Homology	CDS	827	1276	.	-	0	ID=cds-WP_000835182.1;Parent=gene-C9E96_RS22280;Dbxref=GenBank:WP_000835182.1;Name=WP_000835182.1;gbkey=CDS;gene=napB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461199.1;locus_tag=C9E96_RS22280;product=nitrate reductase cytochrome c-type subunit;protein_id=WP_000835182.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	1392	2261	.	-	.	ID=gene-C9E96_RS22285;Name=napH;gbkey=Gene;gene=napH;gene_biotype=protein_coding;locus_tag=C9E96_RS22285;old_locus_tag=C9E96_22850
NZ_PYJX01000232.1	Protein Homology	CDS	1392	2261	.	-	0	ID=cds-WP_000013529.1;Parent=gene-C9E96_RS22285;Dbxref=GenBank:WP_000013529.1;Name=WP_000013529.1;gbkey=CDS;gene=napH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461200.1;locus_tag=C9E96_RS22285;product=quinol dehydrogenase ferredoxin subunit NapH;protein_id=WP_000013529.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	2248	2943	.	-	.	ID=gene-C9E96_RS22290;Name=napG;gbkey=Gene;gene=napG;gene_biotype=protein_coding;locus_tag=C9E96_RS22290;old_locus_tag=C9E96_22855
NZ_PYJX01000232.1	Protein Homology	CDS	2248	2943	.	-	0	ID=cds-WP_000091679.1;Parent=gene-C9E96_RS22290;Dbxref=GenBank:WP_000091679.1;Name=WP_000091679.1;gbkey=CDS;gene=napG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461201.1;locus_tag=C9E96_RS22290;product=ferredoxin-type protein NapG;protein_id=WP_000091679.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	2950	5436	.	-	.	ID=gene-C9E96_RS22295;Name=napA;gbkey=Gene;gene=napA;gene_biotype=protein_coding;locus_tag=C9E96_RS22295;old_locus_tag=C9E96_22860
NZ_PYJX01000232.1	Protein Homology	CDS	2950	5436	.	-	0	ID=cds-WP_000778090.1;Parent=gene-C9E96_RS22295;Dbxref=GenBank:WP_000778090.1;Name=WP_000778090.1;Ontology_term=GO:0008940,GO:0030151,GO:0043546,GO:0051539;gbkey=CDS;gene=napA;go_function=nitrate reductase activity|0008940||IEA,molybdenum ion binding|0030151||IEA,molybdopterin cofactor binding|0043546||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461202.1;locus_tag=C9E96_RS22295;product=nitrate reductase catalytic subunit NapA;protein_id=WP_000778090.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	5433	5696	.	-	.	ID=gene-C9E96_RS22300;Name=napD;gbkey=Gene;gene=napD;gene_biotype=protein_coding;locus_tag=C9E96_RS22300;old_locus_tag=C9E96_22865
NZ_PYJX01000232.1	Protein Homology	CDS	5433	5696	.	-	0	ID=cds-WP_001260058.1;Parent=gene-C9E96_RS22300;Dbxref=GenBank:WP_001260058.1;Name=WP_001260058.1;gbkey=CDS;gene=napD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461203.1;locus_tag=C9E96_RS22300;product=chaperone NapD;protein_id=WP_001260058.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	5686	6177	.	-	.	ID=gene-C9E96_RS22305;Name=napF;gbkey=Gene;gene=napF;gene_biotype=protein_coding;locus_tag=C9E96_RS22305;old_locus_tag=C9E96_22870
NZ_PYJX01000232.1	Protein Homology	CDS	5686	6177	.	-	0	ID=cds-WP_023993399.1;Parent=gene-C9E96_RS22305;Dbxref=GenBank:WP_023993399.1;Name=WP_023993399.1;Ontology_term=GO:0051539;gbkey=CDS;gene=napF;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461204.1;locus_tag=C9E96_RS22305;product=ferredoxin-type protein NapF;protein_id=WP_023993399.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	6591	7085	.	+	.	ID=gene-C9E96_RS22310;Name=eco;gbkey=Gene;gene=eco;gene_biotype=protein_coding;locus_tag=C9E96_RS22310;old_locus_tag=C9E96_22875
NZ_PYJX01000232.1	Protein Homology	CDS	6591	7085	.	+	0	ID=cds-WP_135494669.1;Parent=gene-C9E96_RS22310;Dbxref=GenBank:WP_135494669.1;Name=WP_135494669.1;Ontology_term=GO:0004867;gbkey=CDS;gene=eco;go_function=serine-type endopeptidase inhibitor activity|0004867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461205.1;locus_tag=C9E96_RS22310;product=serine protease inhibitor ecotin;protein_id=WP_135494669.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	7285	8928	.	-	.	ID=gene-C9E96_RS22315;Name=C9E96_RS22315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22315;old_locus_tag=C9E96_22880
NZ_PYJX01000232.1	Protein Homology	CDS	7285	8928	.	-	0	ID=cds-WP_135494659.1;Parent=gene-C9E96_RS22315;Dbxref=GenBank:WP_135494659.1;Name=WP_135494659.1;Ontology_term=GO:0015833,GO:0140359,GO:1904680;gbkey=CDS;go_function=ABC-type transporter activity|0140359||IEA,peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461206.1;locus_tag=C9E96_RS22315;product=multidrug ABC transporter permease/ATP-binding protein;protein_id=WP_135494659.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	9004	9654	.	-	.	ID=gene-C9E96_RS22320;Name=alkB;gbkey=Gene;gene=alkB;gene_biotype=protein_coding;locus_tag=C9E96_RS22320;old_locus_tag=C9E96_22885
NZ_PYJX01000232.1	Protein Homology	CDS	9004	9654	.	-	0	ID=cds-WP_080203964.1;Parent=gene-C9E96_RS22320;Dbxref=GenBank:WP_080203964.1;Name=WP_080203964.1;gbkey=CDS;gene=alkB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461207.1;locus_tag=C9E96_RS22320;product=DNA oxidative demethylase AlkB;protein_id=WP_080203964.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	9657	10718	.	-	.	ID=gene-C9E96_RS22325;Name=ada;gbkey=Gene;gene=ada;gene_biotype=protein_coding;locus_tag=C9E96_RS22325;old_locus_tag=C9E96_22890
NZ_PYJX01000232.1	Protein Homology	CDS	9657	10718	.	-	0	ID=cds-WP_000975968.1;Parent=gene-C9E96_RS22325;Dbxref=GenBank:WP_000975968.1;Name=WP_000975968.1;Ontology_term=GO:0006281,GO:0006355,GO:0003700;gbkey=CDS;gene=ada;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=DNA repair|0006281||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461208.1;locus_tag=C9E96_RS22325;product=bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;protein_id=WP_000975968.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	10799	11851	.	-	.	ID=gene-C9E96_RS22330;Name=apbE;gbkey=Gene;gene=apbE;gene_biotype=protein_coding;locus_tag=C9E96_RS22330;old_locus_tag=C9E96_22895
NZ_PYJX01000232.1	Protein Homology	CDS	10799	11851	.	-	0	ID=cds-WP_058215968.1;Parent=gene-C9E96_RS22330;Dbxref=GenBank:WP_058215968.1;Name=WP_058215968.1;Ontology_term=GO:0017013;gbkey=CDS;gene=apbE;go_process=protein flavinylation|0017013||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461209.1;locus_tag=C9E96_RS22330;product=FAD:protein FMN transferase ApbE;protein_id=WP_058215968.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	11966	13102	.	-	.	ID=gene-C9E96_RS22335;Name=C9E96_RS22335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22335;old_locus_tag=C9E96_22900
NZ_PYJX01000232.1	Protein Homology	CDS	11966	13102	.	-	0	ID=cds-WP_000865526.1;Parent=gene-C9E96_RS22335;Dbxref=GenBank:WP_000865526.1;Name=WP_000865526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461210.1;locus_tag=C9E96_RS22335;product=porin OmpC;protein_id=WP_000865526.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	13831	16500	.	+	.	ID=gene-C9E96_RS22340;Name=rcsD;gbkey=Gene;gene=rcsD;gene_biotype=protein_coding;locus_tag=C9E96_RS22340;old_locus_tag=C9E96_22910
NZ_PYJX01000232.1	Protein Homology	CDS	13831	16500	.	+	0	ID=cds-WP_000083205.1;Parent=gene-C9E96_RS22340;Dbxref=GenBank:WP_000083205.1;Name=WP_000083205.1;Ontology_term=GO:0000160,GO:0009927,GO:0005886;gbkey=CDS;gene=rcsD;go_component=plasma membrane|0005886||IEA;go_function=histidine phosphotransfer kinase activity|0009927||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461211.1;locus_tag=C9E96_RS22340;product=phosphotransferase RcsD;protein_id=WP_000083205.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	16517	17167	.	+	.	ID=gene-C9E96_RS22345;Name=rcsB;gbkey=Gene;gene=rcsB;gene_biotype=protein_coding;locus_tag=C9E96_RS22345;old_locus_tag=C9E96_22915
NZ_PYJX01000232.1	Protein Homology	CDS	16517	17167	.	+	0	ID=cds-WP_135494661.1;Parent=gene-C9E96_RS22345;Dbxref=GenBank:WP_135494661.1;Name=WP_135494661.1;gbkey=CDS;gene=rcsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461212.1;locus_tag=C9E96_RS22345;product=response regulator transcription factor RcsB;protein_id=WP_135494661.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	17270	20116	.	-	.	ID=gene-C9E96_RS22350;Name=rcsC;gbkey=Gene;gene=rcsC;gene_biotype=protein_coding;locus_tag=C9E96_RS22350;old_locus_tag=C9E96_22920
NZ_PYJX01000232.1	Protein Homology	CDS	17270	20116	.	-	0	ID=cds-WP_000876081.1;Parent=gene-C9E96_RS22350;Dbxref=GenBank:WP_000876081.1;Name=WP_000876081.1;Ontology_term=GO:0000160,GO:0006355,GO:0018106,GO:0000155,GO:0005524,GO:0016020;gbkey=CDS;gene=rcsC;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,peptidyl-histidine phosphorylation|0018106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461213.1;locus_tag=C9E96_RS22350;product=two-component system sensor histidine kinase RcsC;protein_id=WP_000876081.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	20234	22870	.	-	.	ID=gene-C9E96_RS22355;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=C9E96_RS22355;old_locus_tag=C9E96_22925
NZ_PYJX01000232.1	Protein Homology	CDS	20234	22870	.	-	0	ID=cds-WP_001281271.1;Parent=gene-C9E96_RS22355;Dbxref=GenBank:WP_001281271.1;Name=WP_001281271.1;Ontology_term=GO:0006265,GO:0003916,GO:0003918,GO:0009330;gbkey=CDS;gene=gyrA;go_component=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) complex|0009330||IEA;go_function=DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461214.1;locus_tag=C9E96_RS22355;product=DNA topoisomerase (ATP-hydrolyzing) subunit A;protein_id=WP_001281271.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	23280	24482	.	-	.	ID=gene-C9E96_RS22360;Name=C9E96_RS22360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22360;old_locus_tag=C9E96_22935
NZ_PYJX01000232.1	Protein Homology	CDS	23280	24482	.	-	0	ID=cds-WP_135494664.1;Parent=gene-C9E96_RS22360;Dbxref=GenBank:WP_135494664.1;Name=WP_135494664.1;Ontology_term=GO:0000287,GO:0003824;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461215.1;locus_tag=C9E96_RS22360;product=mandelate racemase/muconate lactonizing enzyme family protein;protein_id=WP_135494664.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	24497	25822	.	-	.	ID=gene-C9E96_RS22365;Name=C9E96_RS22365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22365;old_locus_tag=C9E96_22940
NZ_PYJX01000232.1	Protein Homology	CDS	24497	25822	.	-	0	ID=cds-WP_000098078.1;Parent=gene-C9E96_RS22365;Dbxref=GenBank:WP_000098078.1;Name=WP_000098078.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461216.1;locus_tag=C9E96_RS22365;product=MFS transporter;protein_id=WP_000098078.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	25872	26756	.	+	.	ID=gene-C9E96_RS22370;Name=C9E96_RS22370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22370;old_locus_tag=C9E96_22945
NZ_PYJX01000232.1	Protein Homology	CDS	25872	26756	.	+	0	ID=cds-WP_000944714.1;Parent=gene-C9E96_RS22370;Dbxref=GenBank:WP_000944714.1;Name=WP_000944714.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461217.3;locus_tag=C9E96_RS22370;product=GntR family transcriptional regulator;protein_id=WP_000944714.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	26839	27567	.	+	.	ID=gene-C9E96_RS22375;Name=ubiG;gbkey=Gene;gene=ubiG;gene_biotype=protein_coding;locus_tag=C9E96_RS22375;old_locus_tag=C9E96_22950
NZ_PYJX01000232.1	Protein Homology	CDS	26839	27567	.	+	0	ID=cds-WP_001091009.1;Parent=gene-C9E96_RS22375;Dbxref=GenBank:WP_001091009.1;Name=WP_001091009.1;Ontology_term=GO:0006744,GO:0061542;gbkey=CDS;gene=ubiG;go_function=3-demethylubiquinol 3-O-methyltransferase activity|0061542||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461218.1;locus_tag=C9E96_RS22375;product=bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG;protein_id=WP_001091009.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	27923	30208	.	+	.	ID=gene-C9E96_RS22380;Name=nrdA;gbkey=Gene;gene=nrdA;gene_biotype=protein_coding;locus_tag=C9E96_RS22380;old_locus_tag=C9E96_22955
NZ_PYJX01000232.1	Protein Homology	CDS	27923	30208	.	+	0	ID=cds-WP_001076499.1;Parent=gene-C9E96_RS22380;Dbxref=GenBank:WP_001076499.1;Name=WP_001076499.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129392.1;locus_tag=C9E96_RS22380;product=class 1a ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_001076499.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	30321	31451	.	+	.	ID=gene-C9E96_RS22385;Name=nrdB;gbkey=Gene;gene=nrdB;gene_biotype=protein_coding;locus_tag=C9E96_RS22385;old_locus_tag=C9E96_22960
NZ_PYJX01000232.1	Protein Homology	CDS	30321	31451	.	+	0	ID=cds-WP_000332026.1;Parent=gene-C9E96_RS22385;Dbxref=GenBank:WP_000332026.1;Name=WP_000332026.1;Ontology_term=GO:0009263,GO:0016491;gbkey=CDS;gene=nrdB;go_function=oxidoreductase activity|0016491||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006683700.1;locus_tag=C9E96_RS22385;product=class Ia ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_000332026.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	31451	31705	.	+	.	ID=gene-C9E96_RS22390;Name=yfaE;gbkey=Gene;gene=yfaE;gene_biotype=protein_coding;locus_tag=C9E96_RS22390;old_locus_tag=C9E96_22965
NZ_PYJX01000232.1	Protein Homology	CDS	31451	31705	.	+	0	ID=cds-WP_000533921.1;Parent=gene-C9E96_RS22390;Dbxref=GenBank:WP_000533921.1;Name=WP_000533921.1;gbkey=CDS;gene=yfaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461221.1;locus_tag=C9E96_RS22390;product=ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE;protein_id=WP_000533921.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	31707	32897	.	-	.	ID=gene-C9E96_RS22395;Name=C9E96_RS22395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22395;old_locus_tag=C9E96_22970
NZ_PYJX01000232.1	Protein Homology	CDS	31707	32897	.	-	0	ID=cds-WP_000660247.1;Parent=gene-C9E96_RS22395;Dbxref=GenBank:WP_000660247.1;Name=WP_000660247.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461222.1;locus_tag=C9E96_RS22395;product=MFS transporter;protein_id=WP_000660247.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	33059	33937	.	+	.	ID=gene-C9E96_RS22400;Name=C9E96_RS22400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22400;old_locus_tag=C9E96_22975
NZ_PYJX01000232.1	Protein Homology	CDS	33059	33937	.	+	0	ID=cds-WP_000176719.1;Parent=gene-C9E96_RS22400;Dbxref=GenBank:WP_000176719.1;Name=WP_000176719.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461223.1;locus_tag=C9E96_RS22400;product=LysR family transcriptional regulator;protein_id=WP_000176719.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	34053	35123	.	-	.	ID=gene-C9E96_RS22405;Name=glpQ;gbkey=Gene;gene=glpQ;gene_biotype=protein_coding;locus_tag=C9E96_RS22405;old_locus_tag=C9E96_22980
NZ_PYJX01000232.1	Protein Homology	CDS	34053	35123	.	-	0	ID=cds-WP_000858952.1;Parent=gene-C9E96_RS22405;Dbxref=GenBank:WP_000858952.1;Name=WP_000858952.1;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;gene=glpQ;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461224.1;locus_tag=C9E96_RS22405;product=glycerophosphodiester phosphodiesterase;protein_id=WP_000858952.1;transl_table=11
NZ_PYJX01000232.1	RefSeq	gene	35128	35917	.	-	.	ID=gene-C9E96_RS22410;Name=C9E96_RS22410;end_range=35917,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22410;old_locus_tag=C9E96_22985;partial=true
NZ_PYJX01000232.1	Protein Homology	CDS	35128	35917	.	-	1	ID=cds-WP_135494666.1;Parent=gene-C9E96_RS22410;Dbxref=GenBank:WP_135494666.1;Name=WP_135494666.1;Ontology_term=GO:0055085,GO:0022857;end_range=35917,.;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461225.1;locus_tag=C9E96_RS22410;partial=true;product=MFS transporter;protein_id=WP_135494666.1;transl_table=11
##sequence-region NZ_PYJX01000005.1 1 35228
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000005.1	RefSeq	region	1	35228	.	+	.	ID=NZ_PYJX01000005.1:1..35228;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000005.1	RefSeq	pseudogene	447	752	.	-	.	ID=gene-C9E96_RS00315;Name=C9E96_RS00315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS00315;old_locus_tag=C9E96_00330;partial=true;pseudo=true;start_range=.,447
NZ_PYJX01000005.1	Protein Homology	CDS	447	752	.	-	0	ID=cds-C9E96_RS00315;Parent=gene-C9E96_RS00315;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001751368.1;locus_tag=C9E96_RS00315;partial=true;product=Arm DNA-binding domain-containing protein;pseudo=true;start_range=.,447;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	920	995	.	-	.	ID=gene-C9E96_RS00320;Name=C9E96_RS00320;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS00320;old_locus_tag=C9E96_00335
NZ_PYJX01000005.1	tRNAscan-SE	tRNA	920	995	.	-	.	ID=rna-C9E96_RS00320;Parent=gene-C9E96_RS00320;anticodon=(pos:complement(960..962));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS00320;product=tRNA-Asn
NZ_PYJX01000005.1	tRNAscan-SE	exon	920	995	.	-	.	ID=exon-C9E96_RS00320-1;Parent=rna-C9E96_RS00320;anticodon=(pos:complement(960..962));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS00320;product=tRNA-Asn
NZ_PYJX01000005.1	RefSeq	gene	1096	1893	.	-	.	ID=gene-C9E96_RS00325;Name=mtfA;gbkey=Gene;gene=mtfA;gene_biotype=protein_coding;locus_tag=C9E96_RS00325;old_locus_tag=C9E96_00340
NZ_PYJX01000005.1	Protein Homology	CDS	1096	1893	.	-	0	ID=cds-WP_000598921.1;Parent=gene-C9E96_RS00325;Dbxref=GenBank:WP_000598921.1;Name=WP_000598921.1;Ontology_term=GO:0008237;gbkey=CDS;gene=mtfA;go_function=metallopeptidase activity|0008237||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460951.1;locus_tag=C9E96_RS00325;product=DgsA anti-repressor MtfA;protein_id=WP_000598921.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	1982	2071	.	+	.	ID=gene-C9E96_RS00330;Name=C9E96_RS00330;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS00330;old_locus_tag=C9E96_00345
NZ_PYJX01000005.1	tRNAscan-SE	tRNA	1982	2071	.	+	.	ID=rna-C9E96_RS00330;Parent=gene-C9E96_RS00330;anticodon=(pos:2016..2018);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS00330;product=tRNA-Ser
NZ_PYJX01000005.1	tRNAscan-SE	exon	1982	2071	.	+	.	ID=exon-C9E96_RS00330-1;Parent=rna-C9E96_RS00330;anticodon=(pos:2016..2018);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS00330;product=tRNA-Ser
NZ_PYJX01000005.1	RefSeq	gene	2662	3081	.	+	.	ID=gene-C9E96_RS00345;Name=C9E96_RS00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00345;old_locus_tag=C9E96_00360
NZ_PYJX01000005.1	Protein Homology	CDS	2662	3081	.	+	0	ID=cds-WP_080204101.1;Parent=gene-C9E96_RS00345;Dbxref=GenBank:WP_080204101.1;Name=WP_080204101.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460949.1;locus_tag=C9E96_RS00345;product=translesion error-prone DNA polymerase V autoproteolytic subunit;protein_id=WP_080204101.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	3084	4352	.	+	.	ID=gene-C9E96_RS00350;Name=C9E96_RS00350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00350;old_locus_tag=C9E96_00365
NZ_PYJX01000005.1	Protein Homology	CDS	3084	4352	.	+	0	ID=cds-WP_000457663.1;Parent=gene-C9E96_RS00350;Dbxref=GenBank:WP_000457663.1;Name=WP_000457663.1;Ontology_term=GO:0006974,GO:0009432,GO:0019985,GO:0042276,GO:0003684,GO:0003887;gbkey=CDS;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA damage response|0006974||IEA,SOS response|0009432||IEA,translesion synthesis|0019985||IEA,error-prone translesion synthesis|0042276||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460948.1;locus_tag=C9E96_RS00350;product=Y-family DNA polymerase;protein_id=WP_000457663.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	4807	5019	.	+	.	ID=gene-C9E96_RS00355;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=C9E96_RS00355;old_locus_tag=C9E96_00370
NZ_PYJX01000005.1	Protein Homology	CDS	4807	5019	.	+	0	ID=cds-WP_000208509.1;Parent=gene-C9E96_RS00355;Dbxref=GenBank:WP_000208509.1;Name=WP_000208509.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460947.1;locus_tag=C9E96_RS00355;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_000208509.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	5030	5218	.	+	.	ID=gene-C9E96_RS00360;Name=C9E96_RS00360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00360;old_locus_tag=C9E96_00375
NZ_PYJX01000005.1	Protein Homology	CDS	5030	5218	.	+	0	ID=cds-WP_024131109.1;Parent=gene-C9E96_RS00360;Dbxref=GenBank:WP_024131109.1;Name=WP_024131109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518761.1;locus_tag=C9E96_RS00360;product=hypothetical protein;protein_id=WP_024131109.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	5479	6657	.	-	.	ID=gene-C9E96_RS00365;Name=ompS1;gbkey=Gene;gene=ompS1;gene_biotype=protein_coding;locus_tag=C9E96_RS00365;old_locus_tag=C9E96_00380
NZ_PYJX01000005.1	Protein Homology	CDS	5479	6657	.	-	0	ID=cds-WP_001080668.1;Parent=gene-C9E96_RS00365;Dbxref=GenBank:WP_001080668.1;Name=WP_001080668.1;gbkey=CDS;gene=ompS1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460946.1;locus_tag=C9E96_RS00365;product=porin OmpS1;protein_id=WP_001080668.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	7307	7618	.	+	.	ID=gene-C9E96_RS00370;Name=drpB;gbkey=Gene;gene=drpB;gene_biotype=protein_coding;locus_tag=C9E96_RS00370;old_locus_tag=C9E96_00385
NZ_PYJX01000005.1	Protein Homology	CDS	7307	7618	.	+	0	ID=cds-WP_080204100.1;Parent=gene-C9E96_RS00370;Dbxref=GenBank:WP_080204100.1;Name=WP_080204100.1;Ontology_term=GO:0051301;gbkey=CDS;gene=drpB;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460945.1;locus_tag=C9E96_RS00370;product=cell division protein DrpB;protein_id=WP_080204100.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	7698	8393	.	+	.	ID=gene-C9E96_RS00375;Name=C9E96_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00375;old_locus_tag=C9E96_00390
NZ_PYJX01000005.1	Protein Homology	CDS	7698	8393	.	+	0	ID=cds-WP_080219689.1;Parent=gene-C9E96_RS00375;Dbxref=GenBank:WP_080219689.1;Name=WP_080219689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460944.1;locus_tag=C9E96_RS00375;product=phosphohydrolase;protein_id=WP_080219689.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	8467	9897	.	+	.	ID=gene-C9E96_RS00380;Name=C9E96_RS00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00380;old_locus_tag=C9E96_00395
NZ_PYJX01000005.1	Protein Homology	CDS	8467	9897	.	+	0	ID=cds-WP_135493701.1;Parent=gene-C9E96_RS00380;Dbxref=GenBank:WP_135493701.1;Name=WP_135493701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460943.1;locus_tag=C9E96_RS00380;product=DNA cytosine methyltransferase;protein_id=WP_135493701.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	9878	10348	.	+	.	ID=gene-C9E96_RS00385;Name=C9E96_RS00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00385;old_locus_tag=C9E96_00400
NZ_PYJX01000005.1	Protein Homology	CDS	9878	10348	.	+	0	ID=cds-WP_000785978.1;Parent=gene-C9E96_RS00385;Dbxref=GenBank:WP_000785978.1;Name=WP_000785978.1;Ontology_term=GO:0006298,GO:0004519;gbkey=CDS;go_function=endonuclease activity|0004519||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460942.1;locus_tag=C9E96_RS00385;product=very short patch repair endonuclease;protein_id=WP_000785978.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	10337	11257	.	-	.	ID=gene-C9E96_RS00390;Name=yedA;gbkey=Gene;gene=yedA;gene_biotype=protein_coding;locus_tag=C9E96_RS00390;old_locus_tag=C9E96_00405
NZ_PYJX01000005.1	Protein Homology	CDS	10337	11257	.	-	0	ID=cds-WP_135493703.1;Parent=gene-C9E96_RS00390;Dbxref=GenBank:WP_135493703.1;Name=WP_135493703.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yedA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460941.1;locus_tag=C9E96_RS00390;product=drug/metabolite exporter YedA;protein_id=WP_135493703.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	11426	12343	.	+	.	ID=gene-C9E96_RS00400;Name=C9E96_RS00400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00400;old_locus_tag=C9E96_00415
NZ_PYJX01000005.1	Protein Homology	CDS	11426	12343	.	+	0	ID=cds-WP_085920526.1;Parent=gene-C9E96_RS00400;Dbxref=GenBank:WP_085920526.1;Name=WP_085920526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310723.1;locus_tag=C9E96_RS00400;product=DUF808 domain-containing protein;protein_id=WP_085920526.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	12420	12605	.	+	.	ID=gene-C9E96_RS00405;Name=C9E96_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00405;old_locus_tag=C9E96_00420
NZ_PYJX01000005.1	Protein Homology	CDS	12420	12605	.	+	0	ID=cds-WP_000232161.1;Parent=gene-C9E96_RS00405;Dbxref=GenBank:WP_000232161.1;Name=WP_000232161.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001549490.1;locus_tag=C9E96_RS00405;product=YodC family protein;protein_id=WP_000232161.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	12770	14482	.	+	.	ID=gene-C9E96_RS00410;Name=dgcQ;gbkey=Gene;gene=dgcQ;gene_biotype=protein_coding;locus_tag=C9E96_RS00410;old_locus_tag=C9E96_00425
NZ_PYJX01000005.1	Protein Homology	CDS	12770	14482	.	+	0	ID=cds-WP_001119828.1;Parent=gene-C9E96_RS00410;Dbxref=GenBank:WP_001119828.1;Name=WP_001119828.1;gbkey=CDS;gene=dgcQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460938.1;locus_tag=C9E96_RS00410;product=cellulose biosynthesis regulator diguanylate cyclase DgcQ;protein_id=WP_001119828.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	14461	15276	.	-	.	ID=gene-C9E96_RS00415;Name=C9E96_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00415;old_locus_tag=C9E96_00430
NZ_PYJX01000005.1	Protein Homology	CDS	14461	15276	.	-	0	ID=cds-WP_000948800.1;Parent=gene-C9E96_RS00415;Dbxref=GenBank:WP_000948800.1;Name=WP_000948800.1;Ontology_term=GO:0051479,GO:0050531;gbkey=CDS;go_function=mannosyl-3-phosphoglycerate phosphatase activity|0050531||IEA;go_process=mannosylglycerate biosynthetic process|0051479||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460937.1;locus_tag=C9E96_RS00415;product=mannosyl-3-phosphoglycerate phosphatase-related protein;protein_id=WP_000948800.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	15586	15813	.	-	.	ID=gene-C9E96_RS00420;Name=yodD;gbkey=Gene;gene=yodD;gene_biotype=protein_coding;locus_tag=C9E96_RS00420;old_locus_tag=C9E96_00435
NZ_PYJX01000005.1	Protein Homology	CDS	15586	15813	.	-	0	ID=cds-WP_000844798.1;Parent=gene-C9E96_RS00420;Dbxref=GenBank:WP_000844798.1;Name=WP_000844798.1;gbkey=CDS;gene=yodD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460936.1;locus_tag=C9E96_RS00420;product=YodD family peroxide/acid resistance protein;protein_id=WP_000844798.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	15942	16136	.	+	.	ID=gene-C9E96_RS00425;Name=dsrB;gbkey=Gene;gene=dsrB;gene_biotype=protein_coding;locus_tag=C9E96_RS00425;old_locus_tag=C9E96_00440
NZ_PYJX01000005.1	Protein Homology	CDS	15942	16136	.	+	0	ID=cds-WP_000867218.1;Parent=gene-C9E96_RS00425;Dbxref=GenBank:WP_000867218.1;Name=WP_000867218.1;gbkey=CDS;gene=dsrB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001736680.1;locus_tag=C9E96_RS00425;product=protein DsrB;protein_id=WP_000867218.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	16175	16798	.	-	.	ID=gene-C9E96_RS00430;Name=rcsA;gbkey=Gene;gene=rcsA;gene_biotype=protein_coding;locus_tag=C9E96_RS00430;old_locus_tag=C9E96_00445
NZ_PYJX01000005.1	Protein Homology	CDS	16175	16798	.	-	0	ID=cds-WP_000103971.1;Parent=gene-C9E96_RS00430;Dbxref=GenBank:WP_000103971.1;Name=WP_000103971.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rcsA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460935.1;locus_tag=C9E96_RS00430;product=transcriptional regulator RcsA;protein_id=WP_000103971.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	17080	17874	.	-	.	ID=gene-C9E96_RS00435;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=C9E96_RS00435;old_locus_tag=C9E96_00450
NZ_PYJX01000005.1	Protein Homology	CDS	17080	17874	.	-	0	ID=cds-WP_000616949.1;Parent=gene-C9E96_RS00435;Dbxref=GenBank:WP_000616949.1;Name=WP_000616949.1;Ontology_term=GO:0006605,GO:0044780,GO:0016020;gbkey=CDS;gene=fliR;go_component=membrane|0016020||IEA;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460934.1;locus_tag=C9E96_RS00435;product=flagellar biosynthetic protein FliR;protein_id=WP_000616949.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	17883	18152	.	-	.	ID=gene-C9E96_RS00440;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=C9E96_RS00440;old_locus_tag=C9E96_00455
NZ_PYJX01000005.1	Protein Homology	CDS	17883	18152	.	-	0	ID=cds-WP_000187355.1;Parent=gene-C9E96_RS00440;Dbxref=GenBank:WP_000187355.1;Name=WP_000187355.1;Ontology_term=GO:0044780,GO:0016020;gbkey=CDS;gene=fliQ;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013365797.1;locus_tag=C9E96_RS00440;product=flagellar biosynthesis protein FliQ;protein_id=WP_000187355.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	18162	18899	.	-	.	ID=gene-C9E96_RS00445;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=C9E96_RS00445;old_locus_tag=C9E96_00460
NZ_PYJX01000005.1	Protein Homology	CDS	18162	18899	.	-	0	ID=cds-WP_001253411.1;Parent=gene-C9E96_RS00445;Dbxref=GenBank:WP_001253411.1;Name=WP_001253411.1;Note=The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly.;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;gene=fliP;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460932.1;locus_tag=C9E96_RS00445;product=flagellar type III secretion system pore protein FliP;protein_id=WP_001253411.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	18899	19276	.	-	.	ID=gene-C9E96_RS00450;Name=fliO;gbkey=Gene;gene=fliO;gene_biotype=protein_coding;locus_tag=C9E96_RS00450;old_locus_tag=C9E96_00465
NZ_PYJX01000005.1	Protein Homology	CDS	18899	19276	.	-	0	ID=cds-WP_001648874.1;Parent=gene-C9E96_RS00450;Dbxref=GenBank:WP_001648874.1;Name=WP_001648874.1;Ontology_term=GO:0044781,GO:0016020;gbkey=CDS;gene=fliO;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460931.3;locus_tag=C9E96_RS00450;product=flagellar biosynthetic protein FliO;protein_id=WP_001648874.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	19276	19689	.	-	.	ID=gene-C9E96_RS00455;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=C9E96_RS00455;old_locus_tag=C9E96_00470
NZ_PYJX01000005.1	Protein Homology	CDS	19276	19689	.	-	0	ID=cds-WP_001282115.1;Parent=gene-C9E96_RS00455;Dbxref=GenBank:WP_001282115.1;Name=WP_001282115.1;Ontology_term=GO:0001539,GO:0003774,GO:0009288,GO:0016020;gbkey=CDS;gene=fliN;go_component=bacterial-type flagellum|0009288||IEA,membrane|0016020||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460930.1;locus_tag=C9E96_RS00455;product=flagellar motor switch protein FliN;protein_id=WP_001282115.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	19686	20690	.	-	.	ID=gene-C9E96_RS00460;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=C9E96_RS00460;old_locus_tag=C9E96_00475
NZ_PYJX01000005.1	Protein Homology	CDS	19686	20690	.	-	0	ID=cds-WP_000502811.1;Parent=gene-C9E96_RS00460;Dbxref=GenBank:WP_000502811.1;Name=WP_000502811.1;Ontology_term=GO:0001539,GO:0009288;gbkey=CDS;gene=fliM;go_component=bacterial-type flagellum|0009288||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127760.1;locus_tag=C9E96_RS00460;product=flagellar motor switch protein FliM;protein_id=WP_000502811.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	20695	21162	.	-	.	ID=gene-C9E96_RS00465;Name=fliL;gbkey=Gene;gene=fliL;gene_biotype=protein_coding;locus_tag=C9E96_RS00465;old_locus_tag=C9E96_00480
NZ_PYJX01000005.1	Protein Homology	CDS	20695	21162	.	-	0	ID=cds-WP_000132169.1;Parent=gene-C9E96_RS00465;Dbxref=GenBank:WP_000132169.1;Name=WP_000132169.1;Ontology_term=GO:0006935,GO:0071973,GO:0009425;gbkey=CDS;gene=fliL;go_component=bacterial-type flagellum basal body|0009425||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460928.1;locus_tag=C9E96_RS00465;product=flagellar basal body-associated protein FliL;protein_id=WP_000132169.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	21267	22490	.	-	.	ID=gene-C9E96_RS00470;Name=fliK;gbkey=Gene;gene=fliK;gene_biotype=protein_coding;locus_tag=C9E96_RS00470;old_locus_tag=C9E96_00485
NZ_PYJX01000005.1	Protein Homology	CDS	21267	22490	.	-	0	ID=cds-WP_000631673.1;Parent=gene-C9E96_RS00470;Dbxref=GenBank:WP_000631673.1;Name=WP_000631673.1;Ontology_term=GO:0044780,GO:0009424;gbkey=CDS;gene=fliK;go_component=bacterial-type flagellum hook|0009424||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460927.1;locus_tag=C9E96_RS00470;product=flagellar hook length control protein FliK;protein_id=WP_000631673.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	22487	22930	.	-	.	ID=gene-C9E96_RS00475;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=C9E96_RS00475;old_locus_tag=C9E96_00490
NZ_PYJX01000005.1	Protein Homology	CDS	22487	22930	.	-	0	ID=cds-WP_000046981.1;Parent=gene-C9E96_RS00475;Dbxref=GenBank:WP_000046981.1;Name=WP_000046981.1;Ontology_term=GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliJ;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460926.1;locus_tag=C9E96_RS00475;product=flagellar export protein FliJ;protein_id=WP_000046981.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	22952	24322	.	-	.	ID=gene-C9E96_RS00480;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=C9E96_RS00480;old_locus_tag=C9E96_00495
NZ_PYJX01000005.1	Protein Homology	CDS	22952	24322	.	-	0	ID=cds-WP_000213257.1;Parent=gene-C9E96_RS00480;Dbxref=GenBank:WP_000213257.1;Name=WP_000213257.1;Ontology_term=GO:0044780,GO:0071973,GO:0016887;gbkey=CDS;gene=fliI;go_function=ATP hydrolysis activity|0016887||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460925.1;locus_tag=C9E96_RS00480;product=flagellar protein export ATPase FliI;protein_id=WP_000213257.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	24322	25029	.	-	.	ID=gene-C9E96_RS00485;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=C9E96_RS00485;old_locus_tag=C9E96_00500
NZ_PYJX01000005.1	Protein Homology	CDS	24322	25029	.	-	0	ID=cds-WP_000064163.1;Parent=gene-C9E96_RS00485;Dbxref=GenBank:WP_000064163.1;Name=WP_000064163.1;Ontology_term=GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliH;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460924.1;locus_tag=C9E96_RS00485;product=flagellar assembly protein FliH;protein_id=WP_000064163.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	25022	26017	.	-	.	ID=gene-C9E96_RS00490;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=C9E96_RS00490;old_locus_tag=C9E96_00505
NZ_PYJX01000005.1	Protein Homology	CDS	25022	26017	.	-	0	ID=cds-WP_000067735.1;Parent=gene-C9E96_RS00490;Dbxref=GenBank:WP_000067735.1;Name=WP_000067735.1;Ontology_term=GO:0006935,GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliG;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460923.1;locus_tag=C9E96_RS00490;product=flagellar motor switch protein FliG;protein_id=WP_000067735.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	pseudogene	26010	27692	.	-	.	ID=gene-C9E96_RS00495;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=pseudogene;locus_tag=C9E96_RS00495;old_locus_tag=C9E96_00510;pseudo=true
NZ_PYJX01000005.1	Protein Homology	CDS	26010	27692	.	-	0	ID=cds-C9E96_RS00495;Parent=gene-C9E96_RS00495;Note=internal stop;Ontology_term=GO:0001539,GO:0005198,GO:0009431;gbkey=CDS;gene=fliF;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460922.1;locus_tag=C9E96_RS00495;product=flagellar basal-body MS-ring/collar protein FliF;pseudo=true;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	27909	28223	.	+	.	ID=gene-C9E96_RS00500;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=C9E96_RS00500;old_locus_tag=C9E96_00515
NZ_PYJX01000005.1	Protein Homology	CDS	27909	28223	.	+	0	ID=cds-WP_000719042.1;Parent=gene-C9E96_RS00500;Dbxref=GenBank:WP_000719042.1;Name=WP_000719042.1;Ontology_term=GO:0071973,GO:0003774,GO:0009431;gbkey=CDS;gene=fliE;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460921.1;locus_tag=C9E96_RS00500;product=flagellar hook-basal body complex protein FliE;protein_id=WP_000719042.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	28343	28729	.	-	.	ID=gene-C9E96_RS00505;Name=C9E96_RS00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00505;old_locus_tag=C9E96_00520
NZ_PYJX01000005.1	Protein Homology	CDS	28343	28729	.	-	0	ID=cds-WP_000639596.1;Parent=gene-C9E96_RS00505;Dbxref=GenBank:WP_000639596.1;Name=WP_000639596.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448379.1;locus_tag=C9E96_RS00505;product=hypothetical protein;protein_id=WP_000639596.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	28994	29227	.	-	.	ID=gene-C9E96_RS00510;Name=yedF;gbkey=Gene;gene=yedF;gene_biotype=protein_coding;locus_tag=C9E96_RS00510;old_locus_tag=C9E96_00525
NZ_PYJX01000005.1	Protein Homology	CDS	28994	29227	.	-	0	ID=cds-WP_000790504.1;Parent=gene-C9E96_RS00510;Dbxref=GenBank:WP_000790504.1;Name=WP_000790504.1;gbkey=CDS;gene=yedF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310696.1;locus_tag=C9E96_RS00510;product=sulfurtransferase-like selenium metabolism protein YedF;protein_id=WP_000790504.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	29224	30429	.	-	.	ID=gene-C9E96_RS00515;Name=yedE;gbkey=Gene;gene=yedE;gene_biotype=protein_coding;locus_tag=C9E96_RS00515;old_locus_tag=C9E96_00530
NZ_PYJX01000005.1	Protein Homology	CDS	29224	30429	.	-	0	ID=cds-WP_001535233.1;Parent=gene-C9E96_RS00515;Dbxref=GenBank:WP_001535233.1;Name=WP_001535233.1;gbkey=CDS;gene=yedE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016156840.1;locus_tag=C9E96_RS00515;product=selenium metabolism membrane protein YedE/FdhT;protein_id=WP_001535233.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	30615	31028	.	+	.	ID=gene-C9E96_RS00520;Name=yedD;gbkey=Gene;gene=yedD;gene_biotype=protein_coding;locus_tag=C9E96_RS00520;old_locus_tag=C9E96_00535
NZ_PYJX01000005.1	Protein Homology	CDS	30615	31028	.	+	0	ID=cds-WP_000754694.1;Parent=gene-C9E96_RS00520;Dbxref=GenBank:WP_000754694.1;Name=WP_000754694.1;gbkey=CDS;gene=yedD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000754699.1;locus_tag=C9E96_RS00520;product=lipoprotein YedD;protein_id=WP_000754694.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	31068	32552	.	-	.	ID=gene-C9E96_RS00525;Name=amyA;gbkey=Gene;gene=amyA;gene_biotype=protein_coding;locus_tag=C9E96_RS00525;old_locus_tag=C9E96_00540
NZ_PYJX01000005.1	Protein Homology	CDS	31068	32552	.	-	0	ID=cds-WP_135493705.1;Parent=gene-C9E96_RS00525;Dbxref=GenBank:WP_135493705.1;Name=WP_135493705.1;Ontology_term=GO:0005975,GO:0004553,GO:0005509;gbkey=CDS;gene=amyA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,calcium ion binding|0005509||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460916.1;locus_tag=C9E96_RS00525;product=alpha-amylase;protein_id=WP_135493705.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	32624	32992	.	-	.	ID=gene-C9E96_RS00530;Name=fliT;gbkey=Gene;gene=fliT;gene_biotype=protein_coding;locus_tag=C9E96_RS00530;old_locus_tag=C9E96_00545
NZ_PYJX01000005.1	Protein Homology	CDS	32624	32992	.	-	0	ID=cds-WP_000204899.1;Parent=gene-C9E96_RS00530;Dbxref=GenBank:WP_000204899.1;Name=WP_000204899.1;Ontology_term=GO:0006605,GO:0044780,GO:1902209;gbkey=CDS;gene=fliT;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA,negative regulation of bacterial-type flagellum assembly|1902209||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460915.1;locus_tag=C9E96_RS00530;product=flagella biosynthesis regulatory protein FliT;protein_id=WP_000204899.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	32992	33399	.	-	.	ID=gene-C9E96_RS00535;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=C9E96_RS00535;old_locus_tag=C9E96_00550
NZ_PYJX01000005.1	Protein Homology	CDS	32992	33399	.	-	0	ID=cds-WP_000287764.1;Parent=gene-C9E96_RS00535;Dbxref=GenBank:WP_000287764.1;Name=WP_000287764.1;Ontology_term=GO:0044780;gbkey=CDS;gene=fliS;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460914.1;locus_tag=C9E96_RS00535;product=flagellar export chaperone FliS;protein_id=WP_000287764.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	gene	33414	34817	.	-	.	ID=gene-C9E96_RS00540;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=C9E96_RS00540;old_locus_tag=C9E96_00555
NZ_PYJX01000005.1	Protein Homology	CDS	33414	34817	.	-	0	ID=cds-WP_000146802.1;Parent=gene-C9E96_RS00540;Dbxref=GenBank:WP_000146802.1;Name=WP_000146802.1;Ontology_term=GO:0007155,GO:0009288,GO:0009421;gbkey=CDS;gene=fliD;go_component=bacterial-type flagellum|0009288||IEA,bacterial-type flagellum filament cap|0009421||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460913.1;locus_tag=C9E96_RS00540;product=flagellar filament capping protein FliD;protein_id=WP_000146802.1;transl_table=11
NZ_PYJX01000005.1	RefSeq	pseudogene	35074	35228	.	+	.	ID=gene-C9E96_RS00545;Name=C9E96_RS00545;end_range=35228,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS00545;old_locus_tag=C9E96_00560;partial=true;pseudo=true
NZ_PYJX01000005.1	Protein Homology	CDS	35074	35228	.	+	0	ID=cds-C9E96_RS00545;Parent=gene-C9E96_RS00545;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=35228,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460912.1;locus_tag=C9E96_RS00545;partial=true;product=flagellin FliC;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000079.1 1 33822
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000079.1	RefSeq	region	1	33822	.	+	.	ID=NZ_PYJX01000079.1:1..33822;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000079.1	RefSeq	gene	67	1107	.	-	.	ID=gene-C9E96_RS06665;Name=C9E96_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06665;old_locus_tag=C9E96_06825
NZ_PYJX01000079.1	Protein Homology	CDS	67	1107	.	-	0	ID=cds-WP_080203830.1;Parent=gene-C9E96_RS06665;Dbxref=GenBank:WP_080203830.1;Name=WP_080203830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462948.1;locus_tag=C9E96_RS06665;product=ADP-ribosylglycohydrolase family protein;protein_id=WP_080203830.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	1117	2076	.	-	.	ID=gene-C9E96_RS06670;Name=C9E96_RS06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06670;old_locus_tag=C9E96_06830
NZ_PYJX01000079.1	Protein Homology	CDS	1117	2076	.	-	0	ID=cds-WP_135494003.1;Parent=gene-C9E96_RS06670;Dbxref=GenBank:WP_135494003.1;Name=WP_135494003.1;Ontology_term=GO:0016301;gbkey=CDS;go_function=kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462947.1;locus_tag=C9E96_RS06670;product=aminoimidazole riboside kinase;protein_id=WP_135494003.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	2087	3421	.	-	.	ID=gene-C9E96_RS06675;Name=C9E96_RS06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06675;old_locus_tag=C9E96_06835
NZ_PYJX01000079.1	Protein Homology	CDS	2087	3421	.	-	0	ID=cds-WP_135494005.1;Parent=gene-C9E96_RS06675;Dbxref=GenBank:WP_135494005.1;Name=WP_135494005.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462946.1;locus_tag=C9E96_RS06675;product=MFS transporter;protein_id=WP_135494005.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	3686	4441	.	-	.	ID=gene-C9E96_RS06680;Name=C9E96_RS06680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06680;old_locus_tag=C9E96_06840
NZ_PYJX01000079.1	Protein Homology	CDS	3686	4441	.	-	0	ID=cds-WP_000750754.1;Parent=gene-C9E96_RS06680;Dbxref=GenBank:WP_000750754.1;Name=WP_000750754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462945.1;locus_tag=C9E96_RS06680;product=CDP-diacylglycerol diphosphatase;protein_id=WP_000750754.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	4542	5531	.	-	.	ID=gene-C9E96_RS06685;Name=C9E96_RS06685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06685;old_locus_tag=C9E96_06845
NZ_PYJX01000079.1	Protein Homology	CDS	4542	5531	.	-	0	ID=cds-WP_000758714.1;Parent=gene-C9E96_RS06685;Dbxref=GenBank:WP_000758714.1;Name=WP_000758714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133064.1;locus_tag=C9E96_RS06685;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_000758714.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	5735	6697	.	-	.	ID=gene-C9E96_RS06690;Name=pfkA;gbkey=Gene;gene=pfkA;gene_biotype=protein_coding;locus_tag=C9E96_RS06690;old_locus_tag=C9E96_06850
NZ_PYJX01000079.1	Protein Homology	CDS	5735	6697	.	-	0	ID=cds-WP_000591793.1;Parent=gene-C9E96_RS06690;Dbxref=GenBank:WP_000591793.1;Name=WP_000591793.1;Ontology_term=GO:0006002,GO:0006096,GO:0005524;gbkey=CDS;gene=pfkA;go_function=ATP binding|0005524||IEA;go_process=fructose 6-phosphate metabolic process|0006002||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014072359.1;locus_tag=C9E96_RS06690;product=6-phosphofructokinase;protein_id=WP_000591793.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	6882	7784	.	-	.	ID=gene-C9E96_RS06695;Name=fieF;gbkey=Gene;gene=fieF;gene_biotype=protein_coding;locus_tag=C9E96_RS06695;old_locus_tag=C9E96_06855
NZ_PYJX01000079.1	Protein Homology	CDS	6882	7784	.	-	0	ID=cds-WP_001077320.1;Parent=gene-C9E96_RS06695;Dbxref=GenBank:WP_001077320.1;Name=WP_001077320.1;Note=FieF%2C a metal efflux transporter%2C is a member of the CDF (cation diffusion facilitator) family of transporters.;Ontology_term=GO:0006812,GO:0055085,GO:0008324,GO:0016020;gbkey=CDS;gene=fieF;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=monoatomic cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462942.1;locus_tag=C9E96_RS06695;product=CDF family cation-efflux transporter FieF;protein_id=WP_001077320.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	7932	8432	.	-	.	ID=gene-C9E96_RS06700;Name=cpxP;gbkey=Gene;gene=cpxP;gene_biotype=protein_coding;locus_tag=C9E96_RS06700;old_locus_tag=C9E96_06860
NZ_PYJX01000079.1	Protein Homology	CDS	7932	8432	.	-	0	ID=cds-WP_135494007.1;Parent=gene-C9E96_RS06700;Dbxref=GenBank:WP_135494007.1;Name=WP_135494007.1;gbkey=CDS;gene=cpxP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462941.1;locus_tag=C9E96_RS06700;product=cell-envelope stress modulator CpxP;protein_id=WP_135494007.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	8583	9281	.	+	.	ID=gene-C9E96_RS06705;Name=cpxR;gbkey=Gene;gene=cpxR;gene_biotype=protein_coding;locus_tag=C9E96_RS06705;old_locus_tag=C9E96_06865
NZ_PYJX01000079.1	Protein Homology	CDS	8583	9281	.	+	0	ID=cds-WP_001033731.1;Parent=gene-C9E96_RS06705;Dbxref=GenBank:WP_001033731.1;Name=WP_001033731.1;gbkey=CDS;gene=cpxR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001033718.1;locus_tag=C9E96_RS06705;product=envelope stress response regulator transcription factor CpxR;protein_id=WP_001033731.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	9278	10651	.	+	.	ID=gene-C9E96_RS06710;Name=cpxA;gbkey=Gene;gene=cpxA;gene_biotype=protein_coding;locus_tag=C9E96_RS06710;old_locus_tag=C9E96_06870
NZ_PYJX01000079.1	Protein Homology	CDS	9278	10651	.	+	0	ID=cds-WP_000580402.1;Parent=gene-C9E96_RS06710;Dbxref=GenBank:WP_000580402.1;Name=WP_000580402.1;Ontology_term=GO:0007165,GO:0000155;gbkey=CDS;gene=cpxA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462939.1;locus_tag=C9E96_RS06710;product=envelope stress sensor histidine kinase CpxA;protein_id=WP_000580402.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	10702	11097	.	-	.	ID=gene-C9E96_RS06715;Name=C9E96_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06715;old_locus_tag=C9E96_06875
NZ_PYJX01000079.1	Protein Homology	CDS	10702	11097	.	-	0	ID=cds-WP_000133441.1;Parent=gene-C9E96_RS06715;Dbxref=GenBank:WP_000133441.1;Name=WP_000133441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462938.1;locus_tag=C9E96_RS06715;product=nuclear transport factor 2 family protein;protein_id=WP_000133441.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	11109	11798	.	-	.	ID=gene-C9E96_RS06720;Name=yiiM;gbkey=Gene;gene=yiiM;gene_biotype=protein_coding;locus_tag=C9E96_RS06720;old_locus_tag=C9E96_06880
NZ_PYJX01000079.1	Protein Homology	CDS	11109	11798	.	-	0	ID=cds-WP_165450963.1;Parent=gene-C9E96_RS06720;Dbxref=GenBank:WP_165450963.1;Name=WP_165450963.1;Ontology_term=GO:0003824,GO:0030151,GO:0030170;gbkey=CDS;gene=yiiM;go_function=catalytic activity|0003824||IEA,molybdenum ion binding|0030151||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000559227.1;locus_tag=C9E96_RS06720;product=6-hydroxyaminopurine reductase;protein_id=WP_165450963.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	11868	12488	.	-	.	ID=gene-C9E96_RS06725;Name=sodA;gbkey=Gene;gene=sodA;gene_biotype=protein_coding;locus_tag=C9E96_RS06725;old_locus_tag=C9E96_06885
NZ_PYJX01000079.1	Protein Homology	CDS	11868	12488	.	-	0	ID=cds-WP_135494009.1;Parent=gene-C9E96_RS06725;Dbxref=GenBank:WP_135494009.1;Name=WP_135494009.1;Ontology_term=GO:0006801,GO:0004784;gbkey=CDS;gene=sodA;go_function=superoxide dismutase activity|0004784||IEA;go_process=superoxide metabolic process|0006801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010345169.1;locus_tag=C9E96_RS06725;product=superoxide dismutase [Mn];protein_id=WP_135494009.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	12817	13800	.	+	.	ID=gene-C9E96_RS06730;Name=C9E96_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06730;old_locus_tag=C9E96_06890
NZ_PYJX01000079.1	Protein Homology	CDS	12817	13800	.	+	0	ID=cds-WP_000812816.1;Parent=gene-C9E96_RS06730;Dbxref=GenBank:WP_000812816.1;Name=WP_000812816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462935.1;locus_tag=C9E96_RS06730;product=TRAP transporter substrate-binding protein;protein_id=WP_000812816.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	13819	14334	.	+	.	ID=gene-C9E96_RS06735;Name=C9E96_RS06735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06735;old_locus_tag=C9E96_06895
NZ_PYJX01000079.1	Protein Homology	CDS	13819	14334	.	+	0	ID=cds-WP_001091410.1;Parent=gene-C9E96_RS06735;Dbxref=GenBank:WP_001091410.1;Name=WP_001091410.1;Ontology_term=GO:0015740,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462934.1;locus_tag=C9E96_RS06735;product=TRAP transporter small permease;protein_id=WP_001091410.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	14327	15634	.	+	.	ID=gene-C9E96_RS06740;Name=C9E96_RS06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06740;old_locus_tag=C9E96_06900
NZ_PYJX01000079.1	Protein Homology	CDS	14327	15634	.	+	0	ID=cds-WP_080203827.1;Parent=gene-C9E96_RS06740;Dbxref=GenBank:WP_080203827.1;Name=WP_080203827.1;Ontology_term=GO:0008643,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462933.1;locus_tag=C9E96_RS06740;product=TRAP transporter large permease;protein_id=WP_080203827.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	15793	16476	.	-	.	ID=gene-C9E96_RS06745;Name=C9E96_RS06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06745;old_locus_tag=C9E96_06905
NZ_PYJX01000079.1	Protein Homology	CDS	15793	16476	.	-	0	ID=cds-WP_000378721.1;Parent=gene-C9E96_RS06745;Dbxref=GenBank:WP_000378721.1;Name=WP_000378721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462932.3;locus_tag=C9E96_RS06745;product=oligogalacturonate-specific porin KdgM family protein;protein_id=WP_000378721.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	17095	18129	.	+	.	ID=gene-C9E96_RS06750;Name=rhaT;gbkey=Gene;gene=rhaT;gene_biotype=protein_coding;locus_tag=C9E96_RS06750;old_locus_tag=C9E96_06910
NZ_PYJX01000079.1	Protein Homology	CDS	17095	18129	.	+	0	ID=cds-WP_000063541.1;Parent=gene-C9E96_RS06750;Dbxref=GenBank:WP_000063541.1;Name=WP_000063541.1;Ontology_term=GO:0008645,GO:0015153;gbkey=CDS;gene=rhaT;go_function=rhamnose transmembrane transporter activity|0015153||IEA;go_process=hexose transmembrane transport|0008645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462931.1;locus_tag=C9E96_RS06750;product=L-rhamnose/proton symporter RhaT;protein_id=WP_000063541.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	18126	18974	.	-	.	ID=gene-C9E96_RS06755;Name=rhaR;gbkey=Gene;gene=rhaR;gene_biotype=protein_coding;locus_tag=C9E96_RS06755;old_locus_tag=C9E96_06915
NZ_PYJX01000079.1	Protein Homology	CDS	18126	18974	.	-	0	ID=cds-WP_000013290.1;Parent=gene-C9E96_RS06755;Dbxref=GenBank:WP_000013290.1;Name=WP_000013290.1;gbkey=CDS;gene=rhaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462930.1;locus_tag=C9E96_RS06755;product=HTH-type transcriptional activator RhaR;protein_id=WP_000013290.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	19127	19963	.	-	.	ID=gene-C9E96_RS06760;Name=rhaS;gbkey=Gene;gene=rhaS;gene_biotype=protein_coding;locus_tag=C9E96_RS06760;old_locus_tag=C9E96_06925
NZ_PYJX01000079.1	Protein Homology	CDS	19127	19963	.	-	0	ID=cds-WP_000217112.1;Parent=gene-C9E96_RS06760;Dbxref=GenBank:WP_000217112.1;Name=WP_000217112.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=rhaS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462929.1;locus_tag=C9E96_RS06760;product=HTH-type transcriptional activator RhaS;protein_id=WP_000217112.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	20251	21720	.	+	.	ID=gene-C9E96_RS06765;Name=rhaB;gbkey=Gene;gene=rhaB;gene_biotype=protein_coding;locus_tag=C9E96_RS06765;old_locus_tag=C9E96_06930
NZ_PYJX01000079.1	Protein Homology	CDS	20251	21720	.	+	0	ID=cds-WP_020437536.1;Parent=gene-C9E96_RS06765;Dbxref=GenBank:WP_020437536.1;Name=WP_020437536.1;Ontology_term=GO:0005975,GO:0019301,GO:0008993;gbkey=CDS;gene=rhaB;go_function=rhamnulokinase activity|0008993||IEA;go_process=carbohydrate metabolic process|0005975||IEA,rhamnose catabolic process|0019301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462928.1;locus_tag=C9E96_RS06765;product=rhamnulokinase;protein_id=WP_020437536.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	21717	22976	.	+	.	ID=gene-C9E96_RS06770;Name=C9E96_RS06770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06770;old_locus_tag=C9E96_06935
NZ_PYJX01000079.1	Protein Homology	CDS	21717	22976	.	+	0	ID=cds-WP_000211469.1;Parent=gene-C9E96_RS06770;Dbxref=GenBank:WP_000211469.1;Name=WP_000211469.1;Ontology_term=GO:0019299,GO:0008740,GO:0030145;gbkey=CDS;go_function=L-rhamnose isomerase activity|0008740||IEA,manganese ion binding|0030145||IEA;go_process=rhamnose metabolic process|0019299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462927.1;locus_tag=C9E96_RS06770;product=L-rhamnose isomerase;protein_id=WP_000211469.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	23119	23946	.	+	.	ID=gene-C9E96_RS06775;Name=rhaD;gbkey=Gene;gene=rhaD;gene_biotype=protein_coding;locus_tag=C9E96_RS06775;old_locus_tag=C9E96_06940
NZ_PYJX01000079.1	Protein Homology	CDS	23119	23946	.	+	0	ID=cds-WP_001179685.1;Parent=gene-C9E96_RS06775;Dbxref=GenBank:WP_001179685.1;Name=WP_001179685.1;gbkey=CDS;gene=rhaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462926.1;locus_tag=C9E96_RS06775;product=rhamnulose-1-phosphate aldolase;protein_id=WP_001179685.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	24073	25221	.	+	.	ID=gene-C9E96_RS06780;Name=fucO;gbkey=Gene;gene=fucO;gene_biotype=protein_coding;locus_tag=C9E96_RS06780;old_locus_tag=C9E96_06945
NZ_PYJX01000079.1	Protein Homology	CDS	24073	25221	.	+	0	ID=cds-WP_000009253.1;Parent=gene-C9E96_RS06780;Dbxref=GenBank:WP_000009253.1;Name=WP_000009253.1;Ontology_term=GO:0008912;gbkey=CDS;gene=fucO;go_function=lactaldehyde reductase activity|0008912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462925.1;locus_tag=C9E96_RS06780;product=lactaldehyde reductase;protein_id=WP_000009253.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	25218	25532	.	+	.	ID=gene-C9E96_RS06785;Name=rhaM;gbkey=Gene;gene=rhaM;gene_biotype=protein_coding;locus_tag=C9E96_RS06785;old_locus_tag=C9E96_06950
NZ_PYJX01000079.1	Protein Homology	CDS	25218	25532	.	+	0	ID=cds-WP_000619478.1;Parent=gene-C9E96_RS06785;Dbxref=GenBank:WP_000619478.1;Name=WP_000619478.1;Ontology_term=GO:0019299,GO:0016857,GO:0062192,GO:0005737;gbkey=CDS;gene=rhaM;go_component=cytoplasm|0005737||IEA;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA,L-rhamnose mutarotase activity|0062192||IEA;go_process=rhamnose metabolic process|0019299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462924.1;locus_tag=C9E96_RS06785;product=L-rhamnose mutarotase;protein_id=WP_000619478.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	25621	26169	.	-	.	ID=gene-C9E96_RS06790;Name=C9E96_RS06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06790;old_locus_tag=C9E96_06955
NZ_PYJX01000079.1	Protein Homology	CDS	25621	26169	.	-	0	ID=cds-WP_001517951.1;Parent=gene-C9E96_RS06790;Dbxref=GenBank:WP_001517951.1;Name=WP_001517951.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004855902.1;locus_tag=C9E96_RS06790;product=helix-turn-helix domain-containing protein;protein_id=WP_001517951.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	26270	26929	.	+	.	ID=gene-C9E96_RS06795;Name=C9E96_RS06795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06795;old_locus_tag=C9E96_06960
NZ_PYJX01000079.1	Protein Homology	CDS	26270	26929	.	+	0	ID=cds-WP_000683586.1;Parent=gene-C9E96_RS06795;Dbxref=GenBank:WP_000683586.1;Name=WP_000683586.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:1902495;gbkey=CDS;go_component=membrane|0016020||IEA,transmembrane transporter complex|1902495||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462922.1;locus_tag=C9E96_RS06795;product=AzlC family ABC transporter permease;protein_id=WP_000683586.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	26929	27252	.	+	.	ID=gene-C9E96_RS06800;Name=C9E96_RS06800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06800;old_locus_tag=C9E96_06965
NZ_PYJX01000079.1	Protein Homology	CDS	26929	27252	.	+	0	ID=cds-WP_000527676.1;Parent=gene-C9E96_RS06800;Dbxref=GenBank:WP_000527676.1;Name=WP_000527676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462921.1;locus_tag=C9E96_RS06800;product=AzlD domain-containing protein;protein_id=WP_000527676.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	27596	28696	.	-	.	ID=gene-C9E96_RS06805;Name=C9E96_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06805;old_locus_tag=C9E96_06970
NZ_PYJX01000079.1	Protein Homology	CDS	27596	28696	.	-	0	ID=cds-WP_000828039.1;Parent=gene-C9E96_RS06805;Dbxref=GenBank:WP_000828039.1;Name=WP_000828039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000828052.1;locus_tag=C9E96_RS06805;product=YiiG family protein;protein_id=WP_000828039.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	28879	29910	.	+	.	ID=gene-C9E96_RS06810;Name=C9E96_RS06810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06810;old_locus_tag=C9E96_06975
NZ_PYJX01000079.1	Protein Homology	CDS	28879	29910	.	+	0	ID=cds-WP_000710966.1;Parent=gene-C9E96_RS06810;Dbxref=GenBank:WP_000710966.1;Name=WP_000710966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462919.1;locus_tag=C9E96_RS06810;product=YiiG family protein;protein_id=WP_000710966.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	30178	31014	.	-	.	ID=gene-C9E96_RS06815;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=protein_coding;locus_tag=C9E96_RS06815;old_locus_tag=C9E96_06980
NZ_PYJX01000079.1	Protein Homology	CDS	30178	31014	.	-	0	ID=cds-WP_001059740.1;Parent=gene-C9E96_RS06815;Dbxref=GenBank:WP_001059740.1;Name=WP_001059740.1;Ontology_term=GO:0009061,GO:0015942,GO:0016783,GO:0009326;gbkey=CDS;gene=fdhD;go_component=formate dehydrogenase complex|0009326||IEA;go_function=sulfurtransferase activity|0016783||IEA;go_process=anaerobic respiration|0009061||IEA,formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462918.1;locus_tag=C9E96_RS06815;product=formate dehydrogenase accessory sulfurtransferase FdhD;protein_id=WP_001059740.1;transl_table=11
NZ_PYJX01000079.1	RefSeq	gene	31209	33822	.	+	.	ID=gene-C9E96_RS06825;Name=fdnG;end_range=33822,.;gbkey=Gene;gene=fdnG;gene_biotype=protein_coding;locus_tag=C9E96_RS06825;old_locus_tag=C9E96_06990;partial=true
NZ_PYJX01000079.1	Protein Homology	CDS	31209	33822	.	+	0	ID=cds-WP_167852883.1;Parent=gene-C9E96_RS06825;Dbxref=GenBank:WP_167852883.1;Name=WP_167852883.1;Ontology_term=GO:0015942,GO:0008863,GO:0009055,GO:0043546,GO:0047111,GO:0009326;end_range=33822,.;gbkey=CDS;gene=fdnG;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,electron transfer activity|0009055||IEA,molybdopterin cofactor binding|0043546||IEA,formate dehydrogenase (cytochrome-c-553) activity|0047111||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462917.1;locus_tag=C9E96_RS06825;partial=true;product=formate dehydrogenase-N subunit alpha;protein_id=WP_167852883.1;transl_except=(pos:31794..31796%2Caa:Sec);transl_table=11
##sequence-region NZ_PYJX01000183.1 1 33260
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000183.1	RefSeq	region	1	33260	.	+	.	ID=NZ_PYJX01000183.1:1..33260;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000183.1	RefSeq	gene	1	428	.	-	.	ID=gene-C9E96_RS17250;Name=C9E96_RS17250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17250;old_locus_tag=C9E96_17695;partial=true;start_range=.,1
NZ_PYJX01000183.1	Protein Homology	CDS	1	428	.	-	0	ID=cds-WP_135494443.1;Parent=gene-C9E96_RS17250;Dbxref=GenBank:WP_135494443.1;Name=WP_135494443.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019841241.1;locus_tag=C9E96_RS17250;partial=true;product=AAA family ATPase;protein_id=WP_135494443.1;start_range=.,1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	438	968	.	-	.	ID=gene-C9E96_RS17255;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=C9E96_RS17255;old_locus_tag=C9E96_17700
NZ_PYJX01000183.1	Protein Homology	CDS	438	968	.	-	0	ID=cds-WP_000208240.1;Parent=gene-C9E96_RS17255;Dbxref=GenBank:WP_000208240.1;Name=WP_000208240.1;Ontology_term=GO:0051603,GO:0004298,GO:0009376;gbkey=CDS;gene=hslV;go_component=HslUV protease complex|0009376||IEA;go_function=threonine-type endopeptidase activity|0004298||IEA;go_process=proteolysis involved in protein catabolic process|0051603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462973.1;locus_tag=C9E96_RS17255;product=ATP-dependent protease subunit HslV;protein_id=WP_000208240.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	1060	2043	.	-	.	ID=gene-C9E96_RS17260;Name=ftsN;gbkey=Gene;gene=ftsN;gene_biotype=protein_coding;locus_tag=C9E96_RS17260;old_locus_tag=C9E96_17705
NZ_PYJX01000183.1	Protein Homology	CDS	1060	2043	.	-	0	ID=cds-WP_031624612.1;Parent=gene-C9E96_RS17260;Dbxref=GenBank:WP_031624612.1;Name=WP_031624612.1;Ontology_term=GO:0042834;gbkey=CDS;gene=ftsN;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462974.1;locus_tag=C9E96_RS17260;product=cell division protein FtsN;protein_id=WP_031624612.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	2137	3162	.	-	.	ID=gene-C9E96_RS17265;Name=cytR;gbkey=Gene;gene=cytR;gene_biotype=protein_coding;locus_tag=C9E96_RS17265;old_locus_tag=C9E96_17710
NZ_PYJX01000183.1	Protein Homology	CDS	2137	3162	.	-	0	ID=cds-WP_000841337.1;Parent=gene-C9E96_RS17265;Dbxref=GenBank:WP_000841337.1;Name=WP_000841337.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=cytR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462975.1;locus_tag=C9E96_RS17265;product=DNA-binding transcriptional regulator CytR;protein_id=WP_000841337.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	3317	5515	.	-	.	ID=gene-C9E96_RS17270;Name=priA;gbkey=Gene;gene=priA;gene_biotype=protein_coding;locus_tag=C9E96_RS17270;old_locus_tag=C9E96_17715
NZ_PYJX01000183.1	Protein Homology	CDS	3317	5515	.	-	0	ID=cds-WP_000109389.1;Parent=gene-C9E96_RS17270;Dbxref=GenBank:WP_000109389.1;Name=WP_000109389.1;gbkey=CDS;gene=priA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462976.1;locus_tag=C9E96_RS17270;product=primosomal protein N';protein_id=WP_000109389.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	5719	5931	.	+	.	ID=gene-C9E96_RS17275;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=C9E96_RS17275;old_locus_tag=C9E96_17720
NZ_PYJX01000183.1	Protein Homology	CDS	5719	5931	.	+	0	ID=cds-WP_000715284.1;Parent=gene-C9E96_RS17275;Dbxref=GenBank:WP_000715284.1;Name=WP_000715284.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462977.1;locus_tag=C9E96_RS17275;product=50S ribosomal protein L31;protein_id=WP_000715284.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	5976	6638	.	-	.	ID=gene-C9E96_RS17280;Name=C9E96_RS17280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17280;old_locus_tag=C9E96_17725
NZ_PYJX01000183.1	Protein Homology	CDS	5976	6638	.	-	0	ID=cds-WP_080203834.1;Parent=gene-C9E96_RS17280;Dbxref=GenBank:WP_080203834.1;Name=WP_080203834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462978.1;locus_tag=C9E96_RS17280;product=TIGR02117 family protein;protein_id=WP_080203834.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	6839	8629	.	-	.	ID=gene-C9E96_RS17285;Name=C9E96_RS17285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17285;old_locus_tag=C9E96_17730
NZ_PYJX01000183.1	Protein Homology	CDS	6839	8629	.	-	0	ID=cds-WP_080203835.1;Parent=gene-C9E96_RS17285;Dbxref=GenBank:WP_080203835.1;Name=WP_080203835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462979.1;locus_tag=C9E96_RS17285;product=aryl-sulfate sulfotransferase;protein_id=WP_080203835.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	9086	9403	.	-	.	ID=gene-C9E96_RS17290;Name=metJ;gbkey=Gene;gene=metJ;gene_biotype=protein_coding;locus_tag=C9E96_RS17290;old_locus_tag=C9E96_17735
NZ_PYJX01000183.1	Protein Homology	CDS	9086	9403	.	-	0	ID=cds-WP_000852811.1;Parent=gene-C9E96_RS17290;Dbxref=GenBank:WP_000852811.1;Name=WP_000852811.1;gbkey=CDS;gene=metJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015855437.1;locus_tag=C9E96_RS17290;product=met regulon transcriptional regulator MetJ;protein_id=WP_000852811.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	9668	10828	.	+	.	ID=gene-C9E96_RS17295;Name=metB;gbkey=Gene;gene=metB;gene_biotype=protein_coding;locus_tag=C9E96_RS17295;old_locus_tag=C9E96_17740
NZ_PYJX01000183.1	Protein Homology	CDS	9668	10828	.	+	0	ID=cds-WP_000197213.1;Parent=gene-C9E96_RS17295;Dbxref=GenBank:WP_000197213.1;Name=WP_000197213.1;Ontology_term=GO:0019346,GO:0003824,GO:0030170;gbkey=CDS;gene=metB;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462981.1;locus_tag=C9E96_RS17295;product=cystathionine gamma-synthase;protein_id=WP_000197213.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	10831	13263	.	+	.	ID=gene-C9E96_RS17300;Name=C9E96_RS17300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17300;old_locus_tag=C9E96_17745
NZ_PYJX01000183.1	Protein Homology	CDS	10831	13263	.	+	0	ID=cds-WP_080203836.1;Parent=gene-C9E96_RS17300;Dbxref=GenBank:WP_080203836.1;Name=WP_080203836.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000110794.1;locus_tag=C9E96_RS17300;product=bifunctional aspartate kinase/homoserine dehydrogenase II;protein_id=WP_080203836.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	13379	14236	.	-	.	ID=gene-C9E96_RS17305;Name=mscS;gbkey=Gene;gene=mscS;gene_biotype=protein_coding;locus_tag=C9E96_RS17305;old_locus_tag=C9E96_17750
NZ_PYJX01000183.1	Protein Homology	CDS	13379	14236	.	-	0	ID=cds-WP_000398244.1;Parent=gene-C9E96_RS17305;Dbxref=GenBank:WP_000398244.1;Name=WP_000398244.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462983.1;locus_tag=C9E96_RS17305;product=small-conductance mechanosensitive channel MscS;protein_id=WP_000398244.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	14239	15237	.	-	.	ID=gene-C9E96_RS17310;Name=C9E96_RS17310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17310;old_locus_tag=C9E96_17755
NZ_PYJX01000183.1	Protein Homology	CDS	14239	15237	.	-	0	ID=cds-WP_080203837.1;Parent=gene-C9E96_RS17310;Dbxref=GenBank:WP_080203837.1;Name=WP_080203837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000406820.1;locus_tag=C9E96_RS17310;product=hypothetical protein;protein_id=WP_080203837.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	15472	16596	.	-	.	ID=gene-C9E96_RS17315;Name=C9E96_RS17315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17315;old_locus_tag=C9E96_17760
NZ_PYJX01000183.1	Protein Homology	CDS	15472	16596	.	-	0	ID=cds-WP_001134803.1;Parent=gene-C9E96_RS17315;Dbxref=GenBank:WP_001134803.1;Name=WP_001134803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462984.1;locus_tag=C9E96_RS17315;product=hypothetical protein;protein_id=WP_001134803.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	16732	18288	.	+	.	ID=gene-C9E96_RS17320;Name=C9E96_RS17320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17320;old_locus_tag=C9E96_17765
NZ_PYJX01000183.1	Protein Homology	CDS	16732	18288	.	+	0	ID=cds-WP_000865257.1;Parent=gene-C9E96_RS17320;Dbxref=GenBank:WP_000865257.1;Name=WP_000865257.1;Ontology_term=GO:0009166,GO:0000166,GO:0008253,GO:0042578,GO:0046872;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,5'-nucleotidase activity|0008253||IEA,phosphoric ester hydrolase activity|0042578||IEA,metal ion binding|0046872||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462985.1;locus_tag=C9E96_RS17320;product=bifunctional metallophosphatase/5'-nucleotidase;protein_id=WP_000865257.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	18483	19373	.	+	.	ID=gene-C9E96_RS17325;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=C9E96_RS17325;old_locus_tag=C9E96_17770
NZ_PYJX01000183.1	Protein Homology	CDS	18483	19373	.	+	0	ID=cds-WP_000007507.1;Parent=gene-C9E96_RS17325;Dbxref=GenBank:WP_000007507.1;Name=WP_000007507.1;Ontology_term=GO:0009086,GO:0004489;gbkey=CDS;gene=metF;go_function=methylenetetrahydrofolate reductase (NAD(P)H) activity|0004489||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462986.1;locus_tag=C9E96_RS17325;product=methylenetetrahydrofolate reductase;protein_id=WP_000007507.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	19538	21718	.	+	.	ID=gene-C9E96_RS17330;Name=katG;gbkey=Gene;gene=katG;gene_biotype=protein_coding;locus_tag=C9E96_RS17330;old_locus_tag=C9E96_17775
NZ_PYJX01000183.1	Protein Homology	CDS	19538	21718	.	+	0	ID=cds-WP_000108105.1;Parent=gene-C9E96_RS17330;Dbxref=GenBank:WP_000108105.1;Name=WP_000108105.1;Ontology_term=GO:0006979,GO:0004096,GO:0004601,GO:0020037;gbkey=CDS;gene=katG;go_function=catalase activity|0004096||IEA,peroxidase activity|0004601||IEA,heme binding|0020037||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462987.1;locus_tag=C9E96_RS17330;product=catalase/peroxidase HPI;protein_id=WP_000108105.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	21776	22399	.	-	.	ID=gene-C9E96_RS17335;Name=C9E96_RS17335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17335;old_locus_tag=C9E96_17780
NZ_PYJX01000183.1	Protein Homology	CDS	21776	22399	.	-	0	ID=cds-WP_080203838.1;Parent=gene-C9E96_RS17335;Dbxref=GenBank:WP_080203838.1;Name=WP_080203838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462988.1;locus_tag=C9E96_RS17335;product=DUF1287 domain-containing protein;protein_id=WP_080203838.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	22658	23761	.	-	.	ID=gene-C9E96_RS17340;Name=gldA;gbkey=Gene;gene=gldA;gene_biotype=protein_coding;locus_tag=C9E96_RS17340;old_locus_tag=C9E96_17785
NZ_PYJX01000183.1	Protein Homology	CDS	22658	23761	.	-	0	ID=cds-WP_000374031.1;Parent=gene-C9E96_RS17340;Dbxref=GenBank:WP_000374031.1;Name=WP_000374031.1;Ontology_term=GO:0019588,GO:0051596,GO:0008888,GO:0019147;gbkey=CDS;gene=gldA;go_function=glycerol dehydrogenase (NAD+) activity|0008888||IEA,(R)-aminopropanol dehydrogenase activity|0019147||IEA;go_process=anaerobic glycerol catabolic process|0019588||IEA,methylglyoxal catabolic process|0051596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462989.1;locus_tag=C9E96_RS17340;product=bifunctional L-1%2C2-propanediol dehydrogenase/glycerol dehydrogenase;protein_id=WP_000374031.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	23773	24435	.	-	.	ID=gene-C9E96_RS17345;Name=fsa;gbkey=Gene;gene=fsa;gene_biotype=protein_coding;locus_tag=C9E96_RS17345;old_locus_tag=C9E96_17790
NZ_PYJX01000183.1	Protein Homology	CDS	23773	24435	.	-	0	ID=cds-WP_000424866.1;Parent=gene-C9E96_RS17345;Dbxref=GenBank:WP_000424866.1;Name=WP_000424866.1;Ontology_term=GO:0005975,GO:0016832;gbkey=CDS;gene=fsa;go_function=aldehyde-lyase activity|0016832||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462990.1;locus_tag=C9E96_RS17345;product=fructose-6-phosphate aldolase;protein_id=WP_000424866.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	24690	25526	.	-	.	ID=gene-C9E96_RS17350;Name=C9E96_RS17350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17350;old_locus_tag=C9E96_17795
NZ_PYJX01000183.1	Protein Homology	CDS	24690	25526	.	-	0	ID=cds-WP_000274595.1;Parent=gene-C9E96_RS17350;Dbxref=GenBank:WP_000274595.1;Name=WP_000274595.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506508.1;locus_tag=C9E96_RS17350;product=helix-turn-helix transcriptional regulator;protein_id=WP_000274595.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	25687	27420	.	-	.	ID=gene-C9E96_RS17355;Name=C9E96_RS17355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17355;old_locus_tag=C9E96_17800
NZ_PYJX01000183.1	Protein Homology	CDS	25687	27420	.	-	0	ID=cds-WP_001528929.1;Parent=gene-C9E96_RS17355;Dbxref=GenBank:WP_001528929.1;Name=WP_001528929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462998.1;locus_tag=C9E96_RS17355;product=phosphoethanolamine transferase CptA;protein_id=WP_001528929.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	27631	30282	.	-	.	ID=gene-C9E96_RS17360;Name=ppc;gbkey=Gene;gene=ppc;gene_biotype=protein_coding;locus_tag=C9E96_RS17360;old_locus_tag=C9E96_17805
NZ_PYJX01000183.1	Protein Homology	CDS	27631	30282	.	-	0	ID=cds-WP_135494445.1;Parent=gene-C9E96_RS17360;Dbxref=GenBank:WP_135494445.1;Name=WP_135494445.1;Ontology_term=GO:0006099,GO:0015977,GO:0008964;gbkey=CDS;gene=ppc;go_function=phosphoenolpyruvate carboxylase activity|0008964||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,carbon fixation|0015977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004203687.1;locus_tag=C9E96_RS17360;product=phosphoenolpyruvate carboxylase;protein_id=WP_135494445.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	30651	31802	.	-	.	ID=gene-C9E96_RS17365;Name=argE;gbkey=Gene;gene=argE;gene_biotype=protein_coding;locus_tag=C9E96_RS17365;old_locus_tag=C9E96_17815
NZ_PYJX01000183.1	Protein Homology	CDS	30651	31802	.	-	0	ID=cds-WP_000800208.1;Parent=gene-C9E96_RS17365;Dbxref=GenBank:WP_000800208.1;Name=WP_000800208.1;Ontology_term=GO:0006526,GO:0019213;gbkey=CDS;gene=argE;go_function=deacetylase activity|0019213||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463000.1;locus_tag=C9E96_RS17365;product=acetylornithine deacetylase;protein_id=WP_000800208.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	gene	31891	32895	.	+	.	ID=gene-C9E96_RS17370;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=C9E96_RS17370;old_locus_tag=C9E96_17820
NZ_PYJX01000183.1	Protein Homology	CDS	31891	32895	.	+	0	ID=cds-WP_000935332.1;Parent=gene-C9E96_RS17370;Dbxref=GenBank:WP_000935332.1;Name=WP_000935332.1;Ontology_term=GO:0006526,GO:0006592,GO:0003942,GO:0070401;gbkey=CDS;gene=argC;go_function=N-acetyl-gamma-glutamyl-phosphate reductase activity|0003942||IEA,NADP+ binding|0070401||IEA;go_process=L-arginine biosynthetic process|0006526||IEA,ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122770.1;locus_tag=C9E96_RS17370;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_000935332.1;transl_table=11
NZ_PYJX01000183.1	RefSeq	pseudogene	32903	33260	.	+	.	ID=gene-C9E96_RS17375;Name=C9E96_RS17375;end_range=33260,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS17375;old_locus_tag=C9E96_17825;partial=true;pseudo=true
NZ_PYJX01000183.1	Protein Homology	CDS	32903	33260	.	+	0	ID=cds-C9E96_RS17375;Parent=gene-C9E96_RS17375;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=33260,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463002.3;locus_tag=C9E96_RS17375;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000189.1 1 121537
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000189.1	RefSeq	region	1	121537	.	+	.	ID=NZ_PYJX01000189.1:1..121537;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000189.1	RefSeq	pseudogene	1	397	.	-	.	ID=gene-C9E96_RS18220;Name=C9E96_RS18220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS18220;old_locus_tag=C9E96_18700;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000189.1	Protein Homology	CDS	1	397	.	-	0	ID=cds-C9E96_RS18220;Parent=gene-C9E96_RS18220;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462055.1;locus_tag=C9E96_RS18220;partial=true;product=glutathione S-transferase N-terminal domain-containing protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	624	2480	.	+	.	ID=gene-C9E96_RS18225;Name=gss;gbkey=Gene;gene=gss;gene_biotype=protein_coding;locus_tag=C9E96_RS18225;old_locus_tag=C9E96_18705
NZ_PYJX01000189.1	Protein Homology	CDS	624	2480	.	+	0	ID=cds-WP_000033690.1;Parent=gene-C9E96_RS18225;Dbxref=GenBank:WP_000033690.1;Name=WP_000033690.1;gbkey=CDS;gene=gss;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462054.1;locus_tag=C9E96_RS18225;product=bifunctional glutathionylspermidine amidase/synthase;protein_id=WP_000033690.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	3150	4208	.	+	.	ID=gene-C9E96_RS18235;Name=C9E96_RS18235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18235;old_locus_tag=C9E96_18715
NZ_PYJX01000189.1	Protein Homology	CDS	3150	4208	.	+	0	ID=cds-WP_000475246.1;Parent=gene-C9E96_RS18235;Dbxref=GenBank:WP_000475246.1;Name=WP_000475246.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0008270,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA,zinc ion binding|0008270||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462053.1;locus_tag=C9E96_RS18235;product=methyl-accepting chemotaxis protein;protein_id=WP_000475246.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	4508	5920	.	-	.	ID=gene-C9E96_RS18240;Name=uxaC;gbkey=Gene;gene=uxaC;gene_biotype=protein_coding;locus_tag=C9E96_RS18240;old_locus_tag=C9E96_18720
NZ_PYJX01000189.1	Protein Homology	CDS	4508	5920	.	-	0	ID=cds-WP_135494482.1;Parent=gene-C9E96_RS18240;Dbxref=GenBank:WP_135494482.1;Name=WP_135494482.1;Ontology_term=GO:0006064,GO:0008880;gbkey=CDS;gene=uxaC;go_function=glucuronate isomerase activity|0008880||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462052.1;locus_tag=C9E96_RS18240;product=glucuronate isomerase;protein_id=WP_135494482.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	5932	7404	.	-	.	ID=gene-C9E96_RS18245;Name=C9E96_RS18245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18245;old_locus_tag=C9E96_18725
NZ_PYJX01000189.1	Protein Homology	CDS	5932	7404	.	-	0	ID=cds-WP_000437132.1;Parent=gene-C9E96_RS18245;Dbxref=GenBank:WP_000437132.1;Name=WP_000437132.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462051.1;locus_tag=C9E96_RS18245;product=fructuronate reductase;protein_id=WP_000437132.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	7515	8699	.	-	.	ID=gene-C9E96_RS18250;Name=uxuA;gbkey=Gene;gene=uxuA;gene_biotype=protein_coding;locus_tag=C9E96_RS18250;old_locus_tag=C9E96_18730
NZ_PYJX01000189.1	Protein Homology	CDS	7515	8699	.	-	0	ID=cds-WP_000815479.1;Parent=gene-C9E96_RS18250;Dbxref=GenBank:WP_000815479.1;Name=WP_000815479.1;Ontology_term=GO:0006064,GO:0008927;gbkey=CDS;gene=uxuA;go_function=mannonate dehydratase activity|0008927||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462050.1;locus_tag=C9E96_RS18250;product=mannonate dehydratase;protein_id=WP_000815479.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	9104	10408	.	+	.	ID=gene-C9E96_RS18255;Name=C9E96_RS18255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18255;old_locus_tag=C9E96_18735
NZ_PYJX01000189.1	Protein Homology	CDS	9104	10408	.	+	0	ID=cds-WP_052934867.1;Parent=gene-C9E96_RS18255;Dbxref=GenBank:WP_052934867.1;Name=WP_052934867.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462049.1;locus_tag=C9E96_RS18255;product=MFS transporter;protein_id=WP_052934867.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	10804	11682	.	+	.	ID=gene-C9E96_RS18260;Name=C9E96_RS18260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18260;old_locus_tag=C9E96_18740
NZ_PYJX01000189.1	Protein Homology	CDS	10804	11682	.	+	0	ID=cds-WP_000089259.1;Parent=gene-C9E96_RS18260;Dbxref=GenBank:WP_000089259.1;Name=WP_000089259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462048.1;locus_tag=C9E96_RS18260;product=carbon-nitrogen hydrolase family protein;protein_id=WP_000089259.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	11721	12644	.	+	.	ID=gene-C9E96_RS18265;Name=C9E96_RS18265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18265;old_locus_tag=C9E96_18745
NZ_PYJX01000189.1	Protein Homology	CDS	11721	12644	.	+	0	ID=cds-WP_000540888.1;Parent=gene-C9E96_RS18265;Dbxref=GenBank:WP_000540888.1;Name=WP_000540888.1;Ontology_term=GO:0005975,GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462047.1;locus_tag=C9E96_RS18265;product=polysaccharide deacetylase family protein;protein_id=WP_000540888.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	13370	13855	.	+	.	ID=gene-C9E96_RS18270;Name=C9E96_RS18270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18270;old_locus_tag=C9E96_18750
NZ_PYJX01000189.1	Protein Homology	CDS	13370	13855	.	+	0	ID=cds-WP_080203950.1;Parent=gene-C9E96_RS18270;Dbxref=GenBank:WP_080203950.1;Name=WP_080203950.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462046.1;locus_tag=C9E96_RS18270;product=Hcp family type VI secretion system effector;protein_id=WP_080203950.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	13855	14235	.	+	.	ID=gene-C9E96_RS18275;Name=iraD;gbkey=Gene;gene=iraD;gene_biotype=protein_coding;locus_tag=C9E96_RS18275;old_locus_tag=C9E96_18755
NZ_PYJX01000189.1	Protein Homology	CDS	13855	14235	.	+	0	ID=cds-WP_135494490.1;Parent=gene-C9E96_RS18275;Dbxref=GenBank:WP_135494490.1;Name=WP_135494490.1;gbkey=CDS;gene=iraD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462045.1;locus_tag=C9E96_RS18275;product=anti-adapter protein IraD;protein_id=WP_135494490.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	14371	15855	.	-	.	ID=gene-C9E96_RS18280;Name=C9E96_RS18280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18280;old_locus_tag=C9E96_18760
NZ_PYJX01000189.1	Protein Homology	CDS	14371	15855	.	-	0	ID=cds-WP_080203951.1;Parent=gene-C9E96_RS18280;Dbxref=GenBank:WP_080203951.1;Name=WP_080203951.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462044.1;locus_tag=C9E96_RS18280;product=aldehyde dehydrogenase family protein;protein_id=WP_080203951.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	16017	17318	.	+	.	ID=gene-C9E96_RS18285;Name=C9E96_RS18285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18285;old_locus_tag=C9E96_18765
NZ_PYJX01000189.1	Protein Homology	CDS	16017	17318	.	+	0	ID=cds-WP_001092814.1;Parent=gene-C9E96_RS18285;Dbxref=GenBank:WP_001092814.1;Name=WP_001092814.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462043.1;locus_tag=C9E96_RS18285;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_001092814.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	17333	17707	.	+	.	ID=gene-C9E96_RS18290;Name=C9E96_RS18290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18290;old_locus_tag=C9E96_18770
NZ_PYJX01000189.1	Protein Homology	CDS	17333	17707	.	+	0	ID=cds-WP_000542980.1;Parent=gene-C9E96_RS18290;Dbxref=GenBank:WP_000542980.1;Name=WP_000542980.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462042.1;locus_tag=C9E96_RS18290;product=cupin domain-containing protein;protein_id=WP_000542980.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	17916	19415	.	+	.	ID=gene-C9E96_RS18295;Name=C9E96_RS18295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18295;old_locus_tag=C9E96_18775
NZ_PYJX01000189.1	Protein Homology	CDS	17916	19415	.	+	0	ID=cds-WP_000475960.1;Parent=gene-C9E96_RS18295;Dbxref=GenBank:WP_000475960.1;Name=WP_000475960.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462041.1;locus_tag=C9E96_RS18295;product=APC family permease;protein_id=WP_000475960.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	19393	19950	.	+	.	ID=gene-C9E96_RS18300;Name=C9E96_RS18300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18300;old_locus_tag=C9E96_18780
NZ_PYJX01000189.1	Protein Homology	CDS	19393	19950	.	+	0	ID=cds-WP_080203952.1;Parent=gene-C9E96_RS18300;Dbxref=GenBank:WP_080203952.1;Name=WP_080203952.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462040.1;locus_tag=C9E96_RS18300;product=DUF3156 family protein;protein_id=WP_080203952.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	20054	20737	.	-	.	ID=gene-C9E96_RS18305;Name=C9E96_RS18305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18305;old_locus_tag=C9E96_18785
NZ_PYJX01000189.1	Protein Homology	CDS	20054	20737	.	-	0	ID=cds-WP_001275358.1;Parent=gene-C9E96_RS18305;Dbxref=GenBank:WP_001275358.1;Name=WP_001275358.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462039.1;locus_tag=C9E96_RS18305;product=helix-turn-helix transcriptional regulator;protein_id=WP_001275358.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	21249	22433	.	+	.	ID=gene-C9E96_RS18310;Name=C9E96_RS18310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18310;old_locus_tag=C9E96_18790
NZ_PYJX01000189.1	Protein Homology	CDS	21249	22433	.	+	0	ID=cds-WP_080091770.1;Parent=gene-C9E96_RS18310;Dbxref=GenBank:WP_080091770.1;Name=WP_080091770.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462038.1;locus_tag=C9E96_RS18310;product=anaerobic sulfatase maturase;protein_id=WP_080091770.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	22502	24241	.	+	.	ID=gene-C9E96_RS18315;Name=C9E96_RS18315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18315;old_locus_tag=C9E96_18795
NZ_PYJX01000189.1	Protein Homology	CDS	22502	24241	.	+	0	ID=cds-WP_080203953.1;Parent=gene-C9E96_RS18315;Dbxref=GenBank:WP_080203953.1;Name=WP_080203953.1;Ontology_term=GO:0004065,GO:0008081,GO:0046872;gbkey=CDS;go_function=arylsulfatase activity|0004065||IEA,phosphoric diester hydrolase activity|0008081||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462037.1;locus_tag=C9E96_RS18315;product=arylsulfatase;protein_id=WP_080203953.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	24289	25167	.	-	.	ID=gene-C9E96_RS18320;Name=ripR;gbkey=Gene;gene=ripR;gene_biotype=protein_coding;locus_tag=C9E96_RS18320;old_locus_tag=C9E96_18800
NZ_PYJX01000189.1	Protein Homology	CDS	24289	25167	.	-	0	ID=cds-WP_000423170.1;Parent=gene-C9E96_RS18320;Dbxref=GenBank:WP_000423170.1;Name=WP_000423170.1;gbkey=CDS;gene=ripR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462036.1;locus_tag=C9E96_RS18320;product=itaconate degradation transcriptional regulator RipR;protein_id=WP_000423170.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	25259	26101	.	+	.	ID=gene-C9E96_RS18325;Name=ripC;gbkey=Gene;gene=ripC;gene_biotype=protein_coding;locus_tag=C9E96_RS18325;old_locus_tag=C9E96_18805
NZ_PYJX01000189.1	Protein Homology	CDS	25259	26101	.	+	0	ID=cds-WP_001112897.1;Parent=gene-C9E96_RS18325;Dbxref=GenBank:WP_001112897.1;Name=WP_001112897.1;Note=Third step in itaconate degradation.;gbkey=CDS;gene=ripC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462035.1;locus_tag=C9E96_RS18325;product=itaconate degradation C-C-lyase RipC;protein_id=WP_001112897.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	26125	26652	.	+	.	ID=gene-C9E96_RS18330;Name=ripB;gbkey=Gene;gene=ripB;gene_biotype=protein_coding;locus_tag=C9E96_RS18330;old_locus_tag=C9E96_18810
NZ_PYJX01000189.1	Protein Homology	CDS	26125	26652	.	+	0	ID=cds-WP_001037830.1;Parent=gene-C9E96_RS18330;Dbxref=GenBank:WP_001037830.1;Name=WP_001037830.1;Note=Second step in itaconate degradation.;gbkey=CDS;gene=ripB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462034.1;locus_tag=C9E96_RS18330;product=(R)-specific enoyl-CoA hydratase RipB/Ich;protein_id=WP_001037830.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	26677	28002	.	+	.	ID=gene-C9E96_RS18335;Name=ripA;gbkey=Gene;gene=ripA;gene_biotype=protein_coding;gene_synonym=ict;locus_tag=C9E96_RS18335;old_locus_tag=C9E96_18815
NZ_PYJX01000189.1	Protein Homology	CDS	26677	28002	.	+	0	ID=cds-WP_080203954.1;Parent=gene-C9E96_RS18335;Dbxref=GenBank:WP_080203954.1;Name=WP_080203954.1;Note=Transfers CoA from succinate to itaconate;gbkey=CDS;gene=ripA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462033.1;locus_tag=C9E96_RS18335;product=itaconate CoA-transferase RipA/Ict;protein_id=WP_080203954.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	28067	28447	.	+	.	ID=gene-C9E96_RS18340;Name=C9E96_RS18340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18340;old_locus_tag=C9E96_18820
NZ_PYJX01000189.1	Protein Homology	CDS	28067	28447	.	+	0	ID=cds-WP_023993933.1;Parent=gene-C9E96_RS18340;Dbxref=GenBank:WP_023993933.1;Name=WP_023993933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000582669.1;locus_tag=C9E96_RS18340;product=VOC family protein;protein_id=WP_023993933.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	28820	31051	.	-	.	ID=gene-C9E96_RS23990;Name=C9E96_RS23990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23990
NZ_PYJX01000189.1	Protein Homology	CDS	28820	31051	.	-	0	ID=cds-WP_023993934.1;Parent=gene-C9E96_RS23990;Dbxref=GenBank:WP_023993934.1;Name=WP_023993934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000612776.1;locus_tag=C9E96_RS23990;product=hypothetical protein;protein_id=WP_023993934.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	31048	35742	.	-	.	ID=gene-C9E96_RS18350;Name=C9E96_RS18350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18350;old_locus_tag=C9E96_18830
NZ_PYJX01000189.1	Protein Homology	CDS	31048	35742	.	-	0	ID=cds-WP_080203955.1;Parent=gene-C9E96_RS18350;Dbxref=GenBank:WP_080203955.1;Name=WP_080203955.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001694470.1;locus_tag=C9E96_RS18350;product=hypothetical protein;protein_id=WP_080203955.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	35754	37952	.	-	.	ID=gene-C9E96_RS18355;Name=C9E96_RS18355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18355;old_locus_tag=C9E96_18835
NZ_PYJX01000189.1	Protein Homology	CDS	35754	37952	.	-	0	ID=cds-WP_023993936.1;Parent=gene-C9E96_RS18355;Dbxref=GenBank:WP_023993936.1;Name=WP_023993936.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000980865.1;locus_tag=C9E96_RS18355;product=DEAD/DEAH box helicase;protein_id=WP_023993936.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	37949	39265	.	-	.	ID=gene-C9E96_RS18360;Name=C9E96_RS18360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18360;old_locus_tag=C9E96_18840
NZ_PYJX01000189.1	Protein Homology	CDS	37949	39265	.	-	0	ID=cds-WP_023993937.1;Parent=gene-C9E96_RS18360;Dbxref=GenBank:WP_023993937.1;Name=WP_023993937.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000117530.1;locus_tag=C9E96_RS18360;product=ATP-binding protein;protein_id=WP_023993937.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	39269	41596	.	-	.	ID=gene-C9E96_RS18365;Name=C9E96_RS18365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18365;old_locus_tag=C9E96_18845
NZ_PYJX01000189.1	Protein Homology	CDS	39269	41596	.	-	0	ID=cds-WP_023994392.1;Parent=gene-C9E96_RS18365;Dbxref=GenBank:WP_023994392.1;Name=WP_023994392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000421673.1;locus_tag=C9E96_RS18365;product=TerB N-terminal domain-containing protein;protein_id=WP_023994392.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	41780	42847	.	-	.	ID=gene-C9E96_RS18370;Name=C9E96_RS18370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18370;old_locus_tag=C9E96_18850
NZ_PYJX01000189.1	Protein Homology	CDS	41780	42847	.	-	0	ID=cds-WP_023993939.1;Parent=gene-C9E96_RS18370;Dbxref=GenBank:WP_023993939.1;Name=WP_023993939.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001313296.1;locus_tag=C9E96_RS18370;product=nucleotidyl transferase AbiEii/AbiGii toxin family protein;protein_id=WP_023993939.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	42847	43464	.	-	.	ID=gene-C9E96_RS18375;Name=C9E96_RS18375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18375;old_locus_tag=C9E96_18855
NZ_PYJX01000189.1	Protein Homology	CDS	42847	43464	.	-	0	ID=cds-WP_023202708.1;Parent=gene-C9E96_RS18375;Dbxref=GenBank:WP_023202708.1;Name=WP_023202708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123862.1;locus_tag=C9E96_RS18375;product=DUF6088 family protein;protein_id=WP_023202708.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	43663	44115	.	+	.	ID=gene-C9E96_RS18380;Name=C9E96_RS18380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18380;old_locus_tag=C9E96_18860
NZ_PYJX01000189.1	Protein Homology	CDS	43663	44115	.	+	0	ID=cds-WP_023993940.1;Parent=gene-C9E96_RS18380;Dbxref=GenBank:WP_023993940.1;Name=WP_023993940.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024565.6;locus_tag=C9E96_RS18380;product=AAA family ATPase;protein_id=WP_023993940.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	44699	46018	.	-	.	ID=gene-C9E96_RS18390;Name=C9E96_RS18390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18390;old_locus_tag=C9E96_18870
NZ_PYJX01000189.1	Protein Homology	CDS	44699	46018	.	-	0	ID=cds-WP_023994395.1;Parent=gene-C9E96_RS18390;Dbxref=GenBank:WP_023994395.1;Name=WP_023994395.1;Ontology_term=GO:0000166,GO:0016491;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001534139.1;locus_tag=C9E96_RS18390;product=ferredoxin reductase family protein;protein_id=WP_023994395.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	46094	46357	.	-	.	ID=gene-C9E96_RS18395;Name=C9E96_RS18395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18395;old_locus_tag=C9E96_18875
NZ_PYJX01000189.1	Protein Homology	CDS	46094	46357	.	-	0	ID=cds-WP_023994396.1;Parent=gene-C9E96_RS18395;Dbxref=GenBank:WP_023994396.1;Name=WP_023994396.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018986.6;locus_tag=C9E96_RS18395;product=YdgH/BhsA/McbA-like domain containing protein;protein_id=WP_023994396.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	46383	47006	.	-	.	ID=gene-C9E96_RS18400;Name=C9E96_RS18400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18400;old_locus_tag=C9E96_18880
NZ_PYJX01000189.1	Protein Homology	CDS	46383	47006	.	-	0	ID=cds-WP_023232633.1;Parent=gene-C9E96_RS18400;Dbxref=GenBank:WP_023232633.1;Name=WP_023232633.1;Ontology_term=GO:0008753,GO:0009055,GO:0010181,GO:0016491,GO:0050136,GO:0050446;gbkey=CDS;go_function=NADPH dehydrogenase (quinone) activity|0008753||IEA,electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA,NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,azobenzene reductase activity|0050446||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000697438.1;locus_tag=C9E96_RS18400;product=FMN-dependent NADH-azoreductase;protein_id=WP_023232633.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	47107	48012	.	+	.	ID=gene-C9E96_RS18405;Name=C9E96_RS18405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18405;old_locus_tag=C9E96_18885
NZ_PYJX01000189.1	Protein Homology	CDS	47107	48012	.	+	0	ID=cds-WP_135494483.1;Parent=gene-C9E96_RS18405;Dbxref=GenBank:WP_135494483.1;Name=WP_135494483.1;Ontology_term=GO:0006355,GO:0001216,GO:0032993;gbkey=CDS;go_component=protein-DNA complex|0032993||IEA;go_function=DNA-binding transcription activator activity|0001216||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441073.1;locus_tag=C9E96_RS18405;product=LysR family transcriptional regulator;protein_id=WP_135494483.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	pseudogene	48309	48536	.	-	.	ID=gene-C9E96_RS24295;Name=C9E96_RS24295;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24295;old_locus_tag=C9E96_18890;partial=true;pseudo=true;start_range=.,48309
NZ_PYJX01000189.1	Protein Homology	CDS	48309	48536	.	-	0	ID=cds-C9E96_RS24295;Parent=gene-C9E96_RS24295;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005975783.1;locus_tag=C9E96_RS24295;partial=true;product=Arm DNA-binding domain-containing protein;pseudo=true;start_range=.,48309;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	48696	48771	.	-	.	ID=gene-C9E96_RS18415;Name=C9E96_RS18415;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS18415;old_locus_tag=C9E96_18895
NZ_PYJX01000189.1	tRNAscan-SE	tRNA	48696	48771	.	-	.	ID=rna-C9E96_RS18415;Parent=gene-C9E96_RS18415;anticodon=(pos:complement(48736..48738));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS18415;product=tRNA-Phe
NZ_PYJX01000189.1	tRNAscan-SE	exon	48696	48771	.	-	.	ID=exon-C9E96_RS18415-1;Parent=rna-C9E96_RS18415;anticodon=(pos:complement(48736..48738));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS18415;product=tRNA-Phe
NZ_PYJX01000189.1	RefSeq	gene	48877	49584	.	-	.	ID=gene-C9E96_RS18420;Name=C9E96_RS18420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18420;old_locus_tag=C9E96_18900
NZ_PYJX01000189.1	Protein Homology	CDS	48877	49584	.	-	0	ID=cds-WP_000234466.1;Parent=gene-C9E96_RS18420;Dbxref=GenBank:WP_000234466.1;Name=WP_000234466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462031.1;locus_tag=C9E96_RS18420;product=DUF554 domain-containing protein;protein_id=WP_000234466.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	50009	52144	.	+	.	ID=gene-C9E96_RS18425;Name=C9E96_RS18425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18425;old_locus_tag=C9E96_18910
NZ_PYJX01000189.1	Protein Homology	CDS	50009	52144	.	+	0	ID=cds-WP_135494484.1;Parent=gene-C9E96_RS18425;Dbxref=GenBank:WP_135494484.1;Name=WP_135494484.1;Ontology_term=GO:0006596,GO:0016831;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA;go_process=polyamine biosynthetic process|0006596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462030.1;locus_tag=C9E96_RS18425;product=ornithine decarboxylase;protein_id=WP_135494484.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	52206	53462	.	-	.	ID=gene-C9E96_RS18430;Name=C9E96_RS18430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18430;old_locus_tag=C9E96_18915
NZ_PYJX01000189.1	Protein Homology	CDS	52206	53462	.	-	0	ID=cds-WP_001049804.1;Parent=gene-C9E96_RS18430;Dbxref=GenBank:WP_001049804.1;Name=WP_001049804.1;Ontology_term=GO:0015858,GO:0055085,GO:0015506,GO:0022857;gbkey=CDS;go_function=nucleoside:proton symporter activity|0015506||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleoside transport|0015858||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462029.1;locus_tag=C9E96_RS18430;product=nucleoside permease;protein_id=WP_001049804.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	53679	54764	.	-	.	ID=gene-C9E96_RS18435;Name=mltC;gbkey=Gene;gene=mltC;gene_biotype=protein_coding;locus_tag=C9E96_RS18435;old_locus_tag=C9E96_18920
NZ_PYJX01000189.1	Protein Homology	CDS	53679	54764	.	-	0	ID=cds-WP_000976289.1;Parent=gene-C9E96_RS18435;Dbxref=GenBank:WP_000976289.1;Name=WP_000976289.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltC;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462028.1;locus_tag=C9E96_RS18435;product=membrane-bound lytic murein transglycosylase MltC;protein_id=WP_000976289.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	54877	55152	.	-	.	ID=gene-C9E96_RS18440;Name=C9E96_RS18440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18440;old_locus_tag=C9E96_18925
NZ_PYJX01000189.1	Protein Homology	CDS	54877	55152	.	-	0	ID=cds-WP_080203956.1;Parent=gene-C9E96_RS18440;Dbxref=GenBank:WP_080203956.1;Name=WP_080203956.1;Ontology_term=GO:0005506;gbkey=CDS;go_function=iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462027.1;locus_tag=C9E96_RS18440;product=oxidative damage protection protein;protein_id=WP_080203956.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	pseudogene	55180	56232	.	-	.	ID=gene-C9E96_RS18445;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=pseudogene;locus_tag=C9E96_RS18445;old_locus_tag=C9E96_18930;pseudo=true
NZ_PYJX01000189.1	Protein Homology	CDS	55180	56232	.	-	0	ID=cds-C9E96_RS18445;Parent=gene-C9E96_RS18445;Note=internal stop;Ontology_term=GO:0006281,GO:0019104;gbkey=CDS;gene=mutY;go_function=DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462026.1;locus_tag=C9E96_RS18445;product=A/G-specific adenine glycosylase;pseudo=true;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	56387	57106	.	+	.	ID=gene-C9E96_RS18450;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=C9E96_RS18450;old_locus_tag=C9E96_18940
NZ_PYJX01000189.1	Protein Homology	CDS	56387	57106	.	+	0	ID=cds-WP_135494485.1;Parent=gene-C9E96_RS18450;Dbxref=GenBank:WP_135494485.1;Name=WP_135494485.1;Ontology_term=GO:0006400,GO:0008176;gbkey=CDS;gene=trmB;go_function=tRNA (guanine(46)-N7)-methyltransferase activity|0008176||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462025.1;locus_tag=C9E96_RS18450;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_135494485.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	57106	57432	.	+	.	ID=gene-C9E96_RS18455;Name=C9E96_RS18455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18455;old_locus_tag=C9E96_18945
NZ_PYJX01000189.1	Protein Homology	CDS	57106	57432	.	+	0	ID=cds-WP_001107574.1;Parent=gene-C9E96_RS18455;Dbxref=GenBank:WP_001107574.1;Name=WP_001107574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462024.1;locus_tag=C9E96_RS18455;product=YggL family protein;protein_id=WP_001107574.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	57482	58201	.	+	.	ID=gene-C9E96_RS18460;Name=C9E96_RS18460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18460;old_locus_tag=C9E96_18950
NZ_PYJX01000189.1	Protein Homology	CDS	57482	58201	.	+	0	ID=cds-WP_000984827.1;Parent=gene-C9E96_RS18460;Dbxref=GenBank:WP_000984827.1;Name=WP_000984827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462023.1;locus_tag=C9E96_RS18460;product=DUF2884 domain-containing protein;protein_id=WP_000984827.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	58390	59436	.	+	.	ID=gene-C9E96_RS18465;Name=ansB;gbkey=Gene;gene=ansB;gene_biotype=protein_coding;locus_tag=C9E96_RS18465;old_locus_tag=C9E96_18955
NZ_PYJX01000189.1	Protein Homology	CDS	58390	59436	.	+	0	ID=cds-WP_000394188.1;Parent=gene-C9E96_RS18465;Dbxref=GenBank:WP_000394188.1;Name=WP_000394188.1;Ontology_term=GO:0006528,GO:0004067;gbkey=CDS;gene=ansB;go_function=asparaginase activity|0004067||IEA;go_process=asparagine metabolic process|0006528||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462022.1;locus_tag=C9E96_RS18465;product=L-asparaginase 2;protein_id=WP_000394188.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	59569	60576	.	+	.	ID=gene-C9E96_RS18470;Name=C9E96_RS18470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18470;old_locus_tag=C9E96_18960
NZ_PYJX01000189.1	Protein Homology	CDS	59569	60576	.	+	0	ID=cds-WP_080203957.1;Parent=gene-C9E96_RS18470;Dbxref=GenBank:WP_080203957.1;Name=WP_080203957.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462021.1;locus_tag=C9E96_RS18470;product=DUF1202 domain-containing protein;protein_id=WP_080203957.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	60668	61804	.	-	.	ID=gene-C9E96_RS18475;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=C9E96_RS18475;old_locus_tag=C9E96_18965
NZ_PYJX01000189.1	Protein Homology	CDS	60668	61804	.	-	0	ID=cds-WP_023993944.1;Parent=gene-C9E96_RS18475;Dbxref=GenBank:WP_023993944.1;Name=WP_023993944.1;Ontology_term=GO:0006779,GO:0051539,GO:0051989,GO:0005737;gbkey=CDS;gene=hemW;go_component=cytoplasm|0005737||IEA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462020.1;locus_tag=C9E96_RS18475;product=radical SAM family heme chaperone HemW;protein_id=WP_023993944.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	61797	62390	.	-	.	ID=gene-C9E96_RS18480;Name=C9E96_RS18480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18480;old_locus_tag=C9E96_18970
NZ_PYJX01000189.1	Protein Homology	CDS	61797	62390	.	-	0	ID=cds-WP_001174769.1;Parent=gene-C9E96_RS18480;Dbxref=GenBank:WP_001174769.1;Name=WP_001174769.1;Ontology_term=GO:0009143,GO:0047429;gbkey=CDS;go_function=nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleoside triphosphate catabolic process|0009143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462019.1;locus_tag=C9E96_RS18480;product=XTP/dITP diphosphatase;protein_id=WP_001174769.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	62398	62688	.	-	.	ID=gene-C9E96_RS18485;Name=yggU;gbkey=Gene;gene=yggU;gene_biotype=protein_coding;locus_tag=C9E96_RS18485;old_locus_tag=C9E96_18975
NZ_PYJX01000189.1	Protein Homology	CDS	62398	62688	.	-	0	ID=cds-WP_001277205.1;Parent=gene-C9E96_RS18485;Dbxref=GenBank:WP_001277205.1;Name=WP_001277205.1;gbkey=CDS;gene=yggU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462018.1;locus_tag=C9E96_RS18485;product=DUF167 family protein YggU;protein_id=WP_001277205.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	62685	63251	.	-	.	ID=gene-C9E96_RS18490;Name=C9E96_RS18490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18490;old_locus_tag=C9E96_18980
NZ_PYJX01000189.1	Protein Homology	CDS	62685	63251	.	-	0	ID=cds-WP_001094848.1;Parent=gene-C9E96_RS18490;Dbxref=GenBank:WP_001094848.1;Name=WP_001094848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462017.1;locus_tag=C9E96_RS18490;product=YggT family protein;protein_id=WP_001094848.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	63270	63974	.	-	.	ID=gene-C9E96_RS18495;Name=C9E96_RS18495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18495;old_locus_tag=C9E96_18985
NZ_PYJX01000189.1	Protein Homology	CDS	63270	63974	.	-	0	ID=cds-WP_000997790.1;Parent=gene-C9E96_RS18495;Dbxref=GenBank:WP_000997790.1;Name=WP_000997790.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462016.1;locus_tag=C9E96_RS18495;product=YggS family pyridoxal phosphate-dependent enzyme;protein_id=WP_000997790.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	63992	64972	.	+	.	ID=gene-C9E96_RS18500;Name=C9E96_RS18500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18500;old_locus_tag=C9E96_18990
NZ_PYJX01000189.1	Protein Homology	CDS	63992	64972	.	+	0	ID=cds-WP_001055658.1;Parent=gene-C9E96_RS18500;Dbxref=GenBank:WP_001055658.1;Name=WP_001055658.1;Ontology_term=GO:0043107,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=type IV pilus-dependent motility|0043107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462015.1;locus_tag=C9E96_RS18500;product=type IV pilus twitching motility protein PilT;protein_id=WP_001055658.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	65104	65790	.	+	.	ID=gene-C9E96_RS18505;Name=C9E96_RS18505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18505;old_locus_tag=C9E96_18995
NZ_PYJX01000189.1	Protein Homology	CDS	65104	65790	.	+	0	ID=cds-WP_023993945.1;Parent=gene-C9E96_RS18505;Dbxref=GenBank:WP_023993945.1;Name=WP_023993945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000098328.1;locus_tag=C9E96_RS18505;product=IclR family transcriptional regulator domain-containing protein;protein_id=WP_023993945.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	65837	66253	.	-	.	ID=gene-C9E96_RS18510;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=C9E96_RS18510;old_locus_tag=C9E96_19000
NZ_PYJX01000189.1	Protein Homology	CDS	65837	66253	.	-	0	ID=cds-WP_000017096.1;Parent=gene-C9E96_RS18510;Dbxref=GenBank:WP_000017096.1;Name=WP_000017096.1;Ontology_term=GO:0006364;gbkey=CDS;gene=ruvX;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462013.1;locus_tag=C9E96_RS18510;product=Holliday junction resolvase RuvX;protein_id=WP_000017096.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	66253	66816	.	-	.	ID=gene-C9E96_RS18515;Name=C9E96_RS18515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18515;old_locus_tag=C9E96_19005
NZ_PYJX01000189.1	Protein Homology	CDS	66253	66816	.	-	0	ID=cds-WP_001053173.1;Parent=gene-C9E96_RS18515;Dbxref=GenBank:WP_001053173.1;Name=WP_001053173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417423.4;locus_tag=C9E96_RS18515;product=YqgE/AlgH family protein;protein_id=WP_001053173.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	67032	67979	.	-	.	ID=gene-C9E96_RS18520;Name=gshB;gbkey=Gene;gene=gshB;gene_biotype=protein_coding;locus_tag=C9E96_RS18520;old_locus_tag=C9E96_19010
NZ_PYJX01000189.1	Protein Homology	CDS	67032	67979	.	-	0	ID=cds-WP_135494486.1;Parent=gene-C9E96_RS18520;Dbxref=GenBank:WP_135494486.1;Name=WP_135494486.1;Ontology_term=GO:0006750,GO:0004363,GO:0005524,GO:0046872;gbkey=CDS;gene=gshB;go_function=glutathione synthase activity|0004363||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462011.1;locus_tag=C9E96_RS18520;product=glutathione synthase;protein_id=WP_135494486.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	67999	68730	.	-	.	ID=gene-C9E96_RS18525;Name=rsmE;gbkey=Gene;gene=rsmE;gene_biotype=protein_coding;locus_tag=C9E96_RS18525;old_locus_tag=C9E96_19015
NZ_PYJX01000189.1	Protein Homology	CDS	67999	68730	.	-	0	ID=cds-WP_001675718.1;Parent=gene-C9E96_RS18525;Dbxref=GenBank:WP_001675718.1;Name=WP_001675718.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rsmE;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311849.2;locus_tag=C9E96_RS18525;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=WP_001675718.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	68807	69514	.	-	.	ID=gene-C9E96_RS18530;Name=endA;gbkey=Gene;gene=endA;gene_biotype=protein_coding;locus_tag=C9E96_RS18530;old_locus_tag=C9E96_19020
NZ_PYJX01000189.1	Protein Homology	CDS	68807	69514	.	-	0	ID=cds-WP_000286124.1;Parent=gene-C9E96_RS18530;Dbxref=GenBank:WP_000286124.1;Name=WP_000286124.1;Ontology_term=GO:0004518;gbkey=CDS;gene=endA;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462009.1;locus_tag=C9E96_RS18530;product=deoxyribonuclease I;protein_id=WP_000286124.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	69609	70106	.	-	.	ID=gene-C9E96_RS18535;Name=C9E96_RS18535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18535;old_locus_tag=C9E96_19025
NZ_PYJX01000189.1	Protein Homology	CDS	69609	70106	.	-	0	ID=cds-WP_080203959.1;Parent=gene-C9E96_RS18535;Dbxref=GenBank:WP_080203959.1;Name=WP_080203959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462008.1;locus_tag=C9E96_RS18535;product=SprT family zinc-dependent metalloprotease;protein_id=WP_080203959.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	70185	71579	.	-	.	ID=gene-C9E96_RS18540;Name=galP;gbkey=Gene;gene=galP;gene_biotype=protein_coding;locus_tag=C9E96_RS18540;old_locus_tag=C9E96_19030
NZ_PYJX01000189.1	Protein Homology	CDS	70185	71579	.	-	0	ID=cds-WP_001113171.1;Parent=gene-C9E96_RS18540;Dbxref=GenBank:WP_001113171.1;Name=WP_001113171.1;gbkey=CDS;gene=galP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462007.1;locus_tag=C9E96_RS18540;product=galactose/proton symporter;protein_id=WP_001113171.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	72072	73226	.	-	.	ID=gene-C9E96_RS18545;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=C9E96_RS18545;old_locus_tag=C9E96_19035
NZ_PYJX01000189.1	Protein Homology	CDS	72072	73226	.	-	0	ID=cds-WP_080203960.1;Parent=gene-C9E96_RS18545;Dbxref=GenBank:WP_080203960.1;Name=WP_080203960.1;Ontology_term=GO:0006556,GO:0004478,GO:0005524;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA,ATP binding|0005524||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123306.1;locus_tag=C9E96_RS18545;product=methionine adenosyltransferase;protein_id=WP_080203960.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	73282	73581	.	+	.	ID=gene-C9E96_RS18550;Name=C9E96_RS18550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18550;old_locus_tag=C9E96_19040
NZ_PYJX01000189.1	GeneMarkS-2+	CDS	73282	73581	.	+	0	ID=cds-WP_001543499.1;Parent=gene-C9E96_RS18550;Dbxref=GenBank:WP_001543499.1;Name=WP_001543499.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS18550;product=hypothetical protein;protein_id=WP_001543499.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	73641	73790	.	+	.	ID=gene-C9E96_RS24390;Name=C9E96_RS24390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24390
NZ_PYJX01000189.1	Protein Homology	CDS	73641	73790	.	+	0	ID=cds-WP_001751809.1;Parent=gene-C9E96_RS24390;Dbxref=GenBank:WP_001751809.1;Name=WP_001751809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051195.1;locus_tag=C9E96_RS24390;product=hypothetical protein;protein_id=WP_001751809.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	73876	74007	.	+	.	ID=gene-C9E96_RS18560;Name=yqgB;gbkey=Gene;gene=yqgB;gene_biotype=protein_coding;locus_tag=C9E96_RS18560;old_locus_tag=C9E96_19050
NZ_PYJX01000189.1	Protein Homology	CDS	73876	74007	.	+	0	ID=cds-WP_000729109.1;Parent=gene-C9E96_RS18560;Dbxref=GenBank:WP_000729109.1;Name=WP_000729109.1;gbkey=CDS;gene=yqgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462003.1;locus_tag=C9E96_RS18560;product=acid stress response protein YqgB;protein_id=WP_000729109.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	74016	75992	.	+	.	ID=gene-C9E96_RS18565;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=C9E96_RS18565;old_locus_tag=C9E96_19055
NZ_PYJX01000189.1	Protein Homology	CDS	74016	75992	.	+	0	ID=cds-WP_001278580.1;Parent=gene-C9E96_RS18565;Dbxref=GenBank:WP_001278580.1;Name=WP_001278580.1;Ontology_term=GO:0006527,GO:0008792;gbkey=CDS;gene=speA;go_function=arginine decarboxylase activity|0008792||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462002.1;locus_tag=C9E96_RS18565;product=biosynthetic arginine decarboxylase;protein_id=WP_001278580.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	76136	76867	.	+	.	ID=gene-C9E96_RS18570;Name=C9E96_RS18570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18570;old_locus_tag=C9E96_19060
NZ_PYJX01000189.1	Protein Homology	CDS	76136	76867	.	+	0	ID=cds-WP_000032796.1;Parent=gene-C9E96_RS18570;Dbxref=GenBank:WP_000032796.1;Name=WP_000032796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462001.1;locus_tag=C9E96_RS18570;product=hypothetical protein;protein_id=WP_000032796.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	77022	77822	.	+	.	ID=gene-C9E96_RS18575;Name=C9E96_RS18575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18575;old_locus_tag=C9E96_19065
NZ_PYJX01000189.1	Protein Homology	CDS	77022	77822	.	+	0	ID=cds-WP_001576357.1;Parent=gene-C9E96_RS18575;Dbxref=GenBank:WP_001576357.1;Name=WP_001576357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462000.3;locus_tag=C9E96_RS18575;product=FadR/GntR family transcriptional regulator;protein_id=WP_001576357.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	pseudogene	78137	78427	.	-	.	ID=gene-C9E96_RS24395;Name=C9E96_RS24395;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24395;pseudo=true
NZ_PYJX01000189.1	Protein Homology	CDS	78137	78427	.	-	0	ID=cds-C9E96_RS24395;Parent=gene-C9E96_RS24395;Note=internal stop;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014766.6;locus_tag=C9E96_RS24395;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	79055	80527	.	+	.	ID=gene-C9E96_RS18585;Name=C9E96_RS18585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18585;old_locus_tag=C9E96_19075
NZ_PYJX01000189.1	Protein Homology	CDS	79055	80527	.	+	0	ID=cds-WP_135494487.1;Parent=gene-C9E96_RS18585;Dbxref=GenBank:WP_135494487.1;Name=WP_135494487.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461999.1;locus_tag=C9E96_RS18585;product=mannitol dehydrogenase family protein;protein_id=WP_135494487.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	80530	81546	.	+	.	ID=gene-C9E96_RS18590;Name=C9E96_RS18590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18590;old_locus_tag=C9E96_19080
NZ_PYJX01000189.1	Protein Homology	CDS	80530	81546	.	+	0	ID=cds-WP_000853913.1;Parent=gene-C9E96_RS18590;Dbxref=GenBank:WP_000853913.1;Name=WP_000853913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461998.1;locus_tag=C9E96_RS18590;product=zinc-binding alcohol dehydrogenase family protein;protein_id=WP_000853913.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	81560	82567	.	+	.	ID=gene-C9E96_RS18595;Name=C9E96_RS18595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18595;old_locus_tag=C9E96_19085
NZ_PYJX01000189.1	Protein Homology	CDS	81560	82567	.	+	0	ID=cds-WP_000104231.1;Parent=gene-C9E96_RS18595;Dbxref=GenBank:WP_000104231.1;Name=WP_000104231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461997.1;locus_tag=C9E96_RS18595;product=Ldh family oxidoreductase;protein_id=WP_000104231.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	82606	83079	.	+	.	ID=gene-C9E96_RS18600;Name=C9E96_RS18600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18600;old_locus_tag=C9E96_19090
NZ_PYJX01000189.1	Protein Homology	CDS	82606	83079	.	+	0	ID=cds-WP_079928002.1;Parent=gene-C9E96_RS18600;Dbxref=GenBank:WP_079928002.1;Name=WP_079928002.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461996.1;locus_tag=C9E96_RS18600;product=YhcH/YjgK/YiaL family protein;protein_id=WP_079928002.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	83293	84249	.	+	.	ID=gene-C9E96_RS18605;Name=C9E96_RS18605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18605;old_locus_tag=C9E96_19095
NZ_PYJX01000189.1	Protein Homology	CDS	83293	84249	.	+	0	ID=cds-WP_135494488.1;Parent=gene-C9E96_RS18605;Dbxref=GenBank:WP_135494488.1;Name=WP_135494488.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461995.3;locus_tag=C9E96_RS18605;product=alpha/beta fold hydrolase;protein_id=WP_135494488.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	84455	85375	.	+	.	ID=gene-C9E96_RS18610;Name=speB;gbkey=Gene;gene=speB;gene_biotype=protein_coding;locus_tag=C9E96_RS18610;old_locus_tag=C9E96_19100
NZ_PYJX01000189.1	Protein Homology	CDS	84455	85375	.	+	0	ID=cds-WP_000105550.1;Parent=gene-C9E96_RS18610;Dbxref=GenBank:WP_000105550.1;Name=WP_000105550.1;Ontology_term=GO:0008295,GO:0008783;gbkey=CDS;gene=speB;go_function=agmatinase activity|0008783||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461994.1;locus_tag=C9E96_RS18610;product=agmatinase;protein_id=WP_000105550.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	pseudogene	85379	85463	.	+	.	ID=gene-C9E96_RS24565;Name=C9E96_RS24565;end_range=85463,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24565;old_locus_tag=C9E96_19105;partial=true;pseudo=true;start_range=.,85379
NZ_PYJX01000189.1	Protein Homology	CDS	85379	85463	.	+	0	ID=cds-C9E96_RS24565;Parent=gene-C9E96_RS24565;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=85463,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=C9E96_RS24565;partial=true;product=hypothetical protein;pseudo=true;start_range=.,85379;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	85476	86234	.	-	.	ID=gene-C9E96_RS18620;Name=C9E96_RS18620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18620;old_locus_tag=C9E96_19110
NZ_PYJX01000189.1	Protein Homology	CDS	85476	86234	.	-	0	ID=cds-WP_000701830.1;Parent=gene-C9E96_RS18620;Dbxref=GenBank:WP_000701830.1;Name=WP_000701830.1;Ontology_term=GO:0004222,GO:0008237,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461993.1;locus_tag=C9E96_RS18620;product=M48 family metallopeptidase;protein_id=WP_000701830.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	86510	88501	.	+	.	ID=gene-C9E96_RS18625;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=C9E96_RS18625;old_locus_tag=C9E96_19115
NZ_PYJX01000189.1	Protein Homology	CDS	86510	88501	.	+	0	ID=cds-WP_000098650.1;Parent=gene-C9E96_RS18625;Dbxref=GenBank:WP_000098650.1;Name=WP_000098650.1;Ontology_term=GO:0004802;gbkey=CDS;gene=tkt;go_function=transketolase activity|0004802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461992.1;locus_tag=C9E96_RS18625;product=transketolase;protein_id=WP_000098650.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	88545	89201	.	-	.	ID=gene-C9E96_RS18630;Name=C9E96_RS18630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18630;old_locus_tag=C9E96_19120
NZ_PYJX01000189.1	Protein Homology	CDS	88545	89201	.	-	0	ID=cds-WP_023993950.1;Parent=gene-C9E96_RS18630;Dbxref=GenBank:WP_023993950.1;Name=WP_023993950.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461991.1;locus_tag=C9E96_RS18630;product=ABC transporter ATP-binding protein;protein_id=WP_023993950.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	89195	89872	.	-	.	ID=gene-C9E96_RS18635;Name=C9E96_RS18635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18635;old_locus_tag=C9E96_19125
NZ_PYJX01000189.1	Protein Homology	CDS	89195	89872	.	-	0	ID=cds-WP_001524843.1;Parent=gene-C9E96_RS18635;Dbxref=GenBank:WP_001524843.1;Name=WP_001524843.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461990.1;locus_tag=C9E96_RS18635;product=ABC transporter ATP-binding protein;protein_id=WP_001524843.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	89860	90567	.	-	.	ID=gene-C9E96_RS18640;Name=C9E96_RS18640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18640;old_locus_tag=C9E96_19130
NZ_PYJX01000189.1	Protein Homology	CDS	89860	90567	.	-	0	ID=cds-WP_080204019.1;Parent=gene-C9E96_RS18640;Dbxref=GenBank:WP_080204019.1;Name=WP_080204019.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461989.1;locus_tag=C9E96_RS18640;product=energy-coupling factor transporter transmembrane component T;protein_id=WP_080204019.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	90568	91146	.	-	.	ID=gene-C9E96_RS18645;Name=C9E96_RS18645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18645;old_locus_tag=C9E96_19135
NZ_PYJX01000189.1	Protein Homology	CDS	90568	91146	.	-	0	ID=cds-WP_000124001.1;Parent=gene-C9E96_RS18645;Dbxref=GenBank:WP_000124001.1;Name=WP_000124001.1;Ontology_term=GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461988.1;locus_tag=C9E96_RS18645;product=ECF transporter S component;protein_id=WP_000124001.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	91172	91597	.	-	.	ID=gene-C9E96_RS18650;Name=C9E96_RS18650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18650;old_locus_tag=C9E96_19140
NZ_PYJX01000189.1	Protein Homology	CDS	91172	91597	.	-	0	ID=cds-WP_000218564.1;Parent=gene-C9E96_RS18650;Dbxref=GenBank:WP_000218564.1;Name=WP_000218564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461987.1;locus_tag=C9E96_RS18650;product=PPC domain-containing DNA-binding protein;protein_id=WP_000218564.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	91971	93017	.	+	.	ID=gene-C9E96_RS18660;Name=epd;gbkey=Gene;gene=epd;gene_biotype=protein_coding;locus_tag=C9E96_RS18660;old_locus_tag=C9E96_19150
NZ_PYJX01000189.1	Protein Homology	CDS	91971	93017	.	+	0	ID=cds-WP_080204018.1;Parent=gene-C9E96_RS18660;Dbxref=GenBank:WP_080204018.1;Name=WP_080204018.1;Ontology_term=GO:0042823,GO:0048001,GO:0051287;gbkey=CDS;gene=epd;go_function=erythrose-4-phosphate dehydrogenase activity|0048001||IEA,NAD binding|0051287||IEA;go_process=pyridoxal phosphate biosynthetic process|0042823||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461986.1;locus_tag=C9E96_RS18660;product=erythrose-4-phosphate dehydrogenase;protein_id=WP_080204018.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	93039	94202	.	+	.	ID=gene-C9E96_RS18665;Name=pgk;gbkey=Gene;gene=pgk;gene_biotype=protein_coding;locus_tag=C9E96_RS18665;old_locus_tag=C9E96_19155
NZ_PYJX01000189.1	Protein Homology	CDS	93039	94202	.	+	0	ID=cds-WP_000111274.1;Parent=gene-C9E96_RS18665;Dbxref=GenBank:WP_000111274.1;Name=WP_000111274.1;gbkey=CDS;gene=pgk;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005761248.1;locus_tag=C9E96_RS18665;product=phosphoglycerate kinase;protein_id=WP_000111274.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	94304	95383	.	+	.	ID=gene-C9E96_RS18670;Name=fbaA;gbkey=Gene;gene=fbaA;gene_biotype=protein_coding;locus_tag=C9E96_RS18670;old_locus_tag=C9E96_19160
NZ_PYJX01000189.1	Protein Homology	CDS	94304	95383	.	+	0	ID=cds-WP_000034386.1;Parent=gene-C9E96_RS18670;Dbxref=GenBank:WP_000034386.1;Name=WP_000034386.1;Ontology_term=GO:0005975,GO:0006096,GO:0004332,GO:0008270;gbkey=CDS;gene=fbaA;go_function=fructose-bisphosphate aldolase activity|0004332||IEA,zinc ion binding|0008270||IEA;go_process=carbohydrate metabolic process|0005975||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505616.1;locus_tag=C9E96_RS18670;product=class II fructose-bisphosphate aldolase;protein_id=WP_000034386.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	95616	96476	.	+	.	ID=gene-C9E96_RS18675;Name=C9E96_RS18675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18675;old_locus_tag=C9E96_19165
NZ_PYJX01000189.1	Protein Homology	CDS	95616	96476	.	+	0	ID=cds-WP_080204017.1;Parent=gene-C9E96_RS18675;Dbxref=GenBank:WP_080204017.1;Name=WP_080204017.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461983.1;locus_tag=C9E96_RS18675;product=small-conductance mechanosensitive channel MscS;protein_id=WP_080204017.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	96677	97312	.	+	.	ID=gene-C9E96_RS18680;Name=argO;gbkey=Gene;gene=argO;gene_biotype=protein_coding;locus_tag=C9E96_RS18680;old_locus_tag=C9E96_19170
NZ_PYJX01000189.1	Protein Homology	CDS	96677	97312	.	+	0	ID=cds-WP_000626863.1;Parent=gene-C9E96_RS18680;Dbxref=GenBank:WP_000626863.1;Name=WP_000626863.1;Ontology_term=GO:1903826,GO:0061459,GO:0016020;gbkey=CDS;gene=argO;go_component=membrane|0016020||IEA;go_function=L-arginine transmembrane transporter activity|0061459||IEA;go_process=L-arginine transmembrane transport|1903826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461982.1;locus_tag=C9E96_RS18680;product=arginine exporter ArgO;protein_id=WP_000626863.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	97406	98152	.	+	.	ID=gene-C9E96_RS18685;Name=C9E96_RS18685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18685;old_locus_tag=C9E96_19175
NZ_PYJX01000189.1	Protein Homology	CDS	97406	98152	.	+	0	ID=cds-WP_000669854.1;Parent=gene-C9E96_RS18685;Dbxref=GenBank:WP_000669854.1;Name=WP_000669854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461981.1;locus_tag=C9E96_RS18685;product=oxidative stress defense protein;protein_id=WP_000669854.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	98418	99311	.	-	.	ID=gene-C9E96_RS18695;Name=argP;gbkey=Gene;gene=argP;gene_biotype=protein_coding;locus_tag=C9E96_RS18695;old_locus_tag=C9E96_19185
NZ_PYJX01000189.1	Protein Homology	CDS	98418	99311	.	-	0	ID=cds-WP_000828345.1;Parent=gene-C9E96_RS18695;Dbxref=GenBank:WP_000828345.1;Name=WP_000828345.1;gbkey=CDS;gene=argP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461980.1;locus_tag=C9E96_RS18695;product=DNA-binding transcriptional regulator ArgP;protein_id=WP_000828345.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	99465	100124	.	+	.	ID=gene-C9E96_RS18700;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=C9E96_RS18700;old_locus_tag=C9E96_19190
NZ_PYJX01000189.1	Protein Homology	CDS	99465	100124	.	+	0	ID=cds-WP_000189741.1;Parent=gene-C9E96_RS18700;Dbxref=GenBank:WP_000189741.1;Name=WP_000189741.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiA;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461979.1;locus_tag=C9E96_RS18700;product=ribose-5-phosphate isomerase RpiA;protein_id=WP_000189741.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	100391	101623	.	+	.	ID=gene-C9E96_RS18705;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=C9E96_RS18705;old_locus_tag=C9E96_19195
NZ_PYJX01000189.1	Protein Homology	CDS	100391	101623	.	+	0	ID=cds-WP_001151627.1;Parent=gene-C9E96_RS18705;Dbxref=GenBank:WP_001151627.1;Name=WP_001151627.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=serA;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461978.1;locus_tag=C9E96_RS18705;product=phosphoglycerate dehydrogenase;protein_id=WP_001151627.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	101701	102297	.	-	.	ID=gene-C9E96_RS18710;Name=C9E96_RS18710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18710;old_locus_tag=C9E96_19200
NZ_PYJX01000189.1	Protein Homology	CDS	101701	102297	.	-	0	ID=cds-WP_080204016.1;Parent=gene-C9E96_RS18710;Dbxref=GenBank:WP_080204016.1;Name=WP_080204016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311809.4;locus_tag=C9E96_RS18710;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_080204016.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	102318	102501	.	-	.	ID=gene-C9E96_RS18715;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=C9E96_RS18715;old_locus_tag=C9E96_19205
NZ_PYJX01000189.1	cmsearch	ncRNA	102318	102501	.	-	.	ID=rna-C9E96_RS18715;Parent=gene-C9E96_RS18715;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS18715;product=6S RNA
NZ_PYJX01000189.1	cmsearch	exon	102318	102501	.	-	.	ID=exon-C9E96_RS18715-1;Parent=rna-C9E96_RS18715;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS18715;product=6S RNA
NZ_PYJX01000189.1	RefSeq	gene	102543	102872	.	-	.	ID=gene-C9E96_RS18720;Name=zapA;gbkey=Gene;gene=zapA;gene_biotype=protein_coding;locus_tag=C9E96_RS18720;old_locus_tag=C9E96_19210
NZ_PYJX01000189.1	Protein Homology	CDS	102543	102872	.	-	0	ID=cds-WP_001276011.1;Parent=gene-C9E96_RS18720;Dbxref=GenBank:WP_001276011.1;Name=WP_001276011.1;gbkey=CDS;gene=zapA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461976.1;locus_tag=C9E96_RS18720;product=cell division protein ZapA;protein_id=WP_001276011.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	103039	103617	.	+	.	ID=gene-C9E96_RS18725;Name=C9E96_RS18725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18725;old_locus_tag=C9E96_19220
NZ_PYJX01000189.1	Protein Homology	CDS	103039	103617	.	+	0	ID=cds-WP_000027236.1;Parent=gene-C9E96_RS18725;Dbxref=GenBank:WP_000027236.1;Name=WP_000027236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708672.2;locus_tag=C9E96_RS18725;product=YecA family protein;protein_id=WP_000027236.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	103642	104958	.	+	.	ID=gene-C9E96_RS18730;Name=pepP;gbkey=Gene;gene=pepP;gene_biotype=protein_coding;locus_tag=C9E96_RS18730;old_locus_tag=C9E96_19225
NZ_PYJX01000189.1	Protein Homology	CDS	103642	104958	.	+	0	ID=cds-WP_135494489.1;Parent=gene-C9E96_RS18730;Dbxref=GenBank:WP_135494489.1;Name=WP_135494489.1;Ontology_term=GO:0070006;gbkey=CDS;gene=pepP;go_function=metalloaminopeptidase activity|0070006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461974.1;locus_tag=C9E96_RS18730;product=Xaa-Pro aminopeptidase;protein_id=WP_135494489.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	104955	106133	.	+	.	ID=gene-C9E96_RS18735;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;gene_synonym=visB;locus_tag=C9E96_RS18735;old_locus_tag=C9E96_19230
NZ_PYJX01000189.1	Protein Homology	CDS	104955	106133	.	+	0	ID=cds-WP_080204014.1;Parent=gene-C9E96_RS18735;Dbxref=GenBank:WP_080204014.1;Name=WP_080204014.1;Ontology_term=GO:0006744,GO:0008681,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiH;go_function=2-octaprenyl-6-methoxyphenol hydroxylase activity|0008681||IEA,oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461973.2;locus_tag=C9E96_RS18735;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_080204014.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	106259	107461	.	+	.	ID=gene-C9E96_RS18740;Name=ubiI;gbkey=Gene;gene=ubiI;gene_biotype=protein_coding;gene_synonym=visC;locus_tag=C9E96_RS18740;old_locus_tag=C9E96_19235
NZ_PYJX01000189.1	Protein Homology	CDS	106259	107461	.	+	0	ID=cds-WP_052931769.1;Parent=gene-C9E96_RS18740;Dbxref=GenBank:WP_052931769.1;Name=WP_052931769.1;Ontology_term=GO:0006744,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiI;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461972.1;locus_tag=C9E96_RS18740;product=FAD-dependent 2-octaprenylphenol hydroxylase;protein_id=WP_052931769.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	107916	109010	.	+	.	ID=gene-C9E96_RS18745;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=C9E96_RS18745;old_locus_tag=C9E96_19240
NZ_PYJX01000189.1	Protein Homology	CDS	107916	109010	.	+	0	ID=cds-WP_000068738.1;Parent=gene-C9E96_RS18745;Dbxref=GenBank:WP_000068738.1;Name=WP_000068738.1;Ontology_term=GO:0019464,GO:0004047,GO:0005737;gbkey=CDS;gene=gcvT;go_component=cytoplasm|0005737||IEA;go_function=aminomethyltransferase activity|0004047||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461971.1;locus_tag=C9E96_RS18745;product=glycine cleavage system aminomethyltransferase GcvT;protein_id=WP_000068738.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	109036	109425	.	+	.	ID=gene-C9E96_RS18750;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;locus_tag=C9E96_RS18750;old_locus_tag=C9E96_19245
NZ_PYJX01000189.1	Protein Homology	CDS	109036	109425	.	+	0	ID=cds-WP_001295377.1;Parent=gene-C9E96_RS18750;Dbxref=GenBank:WP_001295377.1;Name=WP_001295377.1;Ontology_term=GO:0019464,GO:0005960;gbkey=CDS;gene=gcvH;go_component=glycine cleavage complex|0005960||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123344.1;locus_tag=C9E96_RS18750;product=glycine cleavage system protein GcvH;protein_id=WP_001295377.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	109588	112461	.	+	.	ID=gene-C9E96_RS18755;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=C9E96_RS18755;old_locus_tag=C9E96_19250
NZ_PYJX01000189.1	Protein Homology	CDS	109588	112461	.	+	0	ID=cds-WP_023993953.1;Parent=gene-C9E96_RS18755;Dbxref=GenBank:WP_023993953.1;Name=WP_023993953.1;Ontology_term=GO:0019464,GO:0004375;gbkey=CDS;gene=gcvP;go_function=glycine dehydrogenase (decarboxylating) activity|0004375||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461969.1;locus_tag=C9E96_RS18755;product=aminomethyl-transferring glycine dehydrogenase;protein_id=WP_023993953.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	112917	113810	.	+	.	ID=gene-C9E96_RS18765;Name=C9E96_RS18765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18765;old_locus_tag=C9E96_19260
NZ_PYJX01000189.1	Protein Homology	CDS	112917	113810	.	+	0	ID=cds-WP_000819375.1;Parent=gene-C9E96_RS18765;Dbxref=GenBank:WP_000819375.1;Name=WP_000819375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461968.1;locus_tag=C9E96_RS18765;product=transporter;protein_id=WP_000819375.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	113858	115291	.	-	.	ID=gene-C9E96_RS18770;Name=bglA;gbkey=Gene;gene=bglA;gene_biotype=protein_coding;locus_tag=C9E96_RS18770;old_locus_tag=C9E96_19265
NZ_PYJX01000189.1	Protein Homology	CDS	113858	115291	.	-	0	ID=cds-WP_001230139.1;Parent=gene-C9E96_RS18770;Dbxref=GenBank:WP_001230139.1;Name=WP_001230139.1;gbkey=CDS;gene=bglA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461967.1;locus_tag=C9E96_RS18770;product=6-phospho-beta-glucosidase BglA;protein_id=WP_001230139.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	115449	115760	.	+	.	ID=gene-C9E96_RS18775;Name=yqfB;gbkey=Gene;gene=yqfB;gene_biotype=protein_coding;locus_tag=C9E96_RS18775;old_locus_tag=C9E96_19270
NZ_PYJX01000189.1	Protein Homology	CDS	115449	115760	.	+	0	ID=cds-WP_001182976.1;Parent=gene-C9E96_RS18775;Dbxref=GenBank:WP_001182976.1;Name=WP_001182976.1;gbkey=CDS;gene=yqfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461966.1;locus_tag=C9E96_RS18775;product=N(4)-acetylcytidine aminohydrolase;protein_id=WP_001182976.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	115924	116583	.	+	.	ID=gene-C9E96_RS18780;Name=trhA;gbkey=Gene;gene=trhA;gene_biotype=protein_coding;locus_tag=C9E96_RS18780;old_locus_tag=C9E96_19275
NZ_PYJX01000189.1	Protein Homology	CDS	115924	116583	.	+	0	ID=cds-WP_000250289.1;Parent=gene-C9E96_RS18780;Dbxref=GenBank:WP_000250289.1;Name=WP_000250289.1;Ontology_term=GO:0019835;gbkey=CDS;gene=trhA;go_process=cytolysis|0019835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461965.1;locus_tag=C9E96_RS18780;product=PAQR family membrane homeostasis protein TrhA;protein_id=WP_000250289.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	116699	117679	.	-	.	ID=gene-C9E96_RS18785;Name=ygfZ;gbkey=Gene;gene=ygfZ;gene_biotype=protein_coding;locus_tag=C9E96_RS18785;old_locus_tag=C9E96_19280
NZ_PYJX01000189.1	Protein Homology	CDS	116699	117679	.	-	0	ID=cds-WP_023260866.1;Parent=gene-C9E96_RS18785;Dbxref=GenBank:WP_023260866.1;Name=WP_023260866.1;Ontology_term=GO:0009451,GO:0005542;gbkey=CDS;gene=ygfZ;go_function=folic acid binding|0005542||IEA;go_process=RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461964.1;locus_tag=C9E96_RS18785;product=tRNA-modifying protein YgfZ;protein_id=WP_023260866.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	117929	118195	.	+	.	ID=gene-C9E96_RS18790;Name=sdhE;gbkey=Gene;gene=sdhE;gene_biotype=protein_coding;locus_tag=C9E96_RS18790;old_locus_tag=C9E96_19290
NZ_PYJX01000189.1	Protein Homology	CDS	117929	118195	.	+	0	ID=cds-WP_079946644.1;Parent=gene-C9E96_RS18790;Dbxref=GenBank:WP_079946644.1;Name=WP_079946644.1;gbkey=CDS;gene=sdhE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000354044.1;locus_tag=C9E96_RS18790;product=FAD assembly factor SdhE;protein_id=WP_079946644.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	118176	118589	.	+	.	ID=gene-C9E96_RS18795;Name=C9E96_RS18795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18795;old_locus_tag=C9E96_19295
NZ_PYJX01000189.1	Protein Homology	CDS	118176	118589	.	+	0	ID=cds-WP_000244761.1;Parent=gene-C9E96_RS18795;Dbxref=GenBank:WP_000244761.1;Name=WP_000244761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461962.1;locus_tag=C9E96_RS18795;product=protein YgfX;protein_id=WP_000244761.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	118642	119163	.	-	.	ID=gene-C9E96_RS18800;Name=fldB;gbkey=Gene;gene=fldB;gene_biotype=protein_coding;locus_tag=C9E96_RS18800;old_locus_tag=C9E96_19300
NZ_PYJX01000189.1	Protein Homology	CDS	118642	119163	.	-	0	ID=cds-WP_001055885.1;Parent=gene-C9E96_RS18800;Dbxref=GenBank:WP_001055885.1;Name=WP_001055885.1;Ontology_term=GO:0009055,GO:0010181;gbkey=CDS;gene=fldB;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461961.1;locus_tag=C9E96_RS18800;product=flavodoxin FldB;protein_id=WP_001055885.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	119276	120172	.	+	.	ID=gene-C9E96_RS18805;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=C9E96_RS18805;old_locus_tag=C9E96_19305
NZ_PYJX01000189.1	Protein Homology	CDS	119276	120172	.	+	0	ID=cds-WP_000434302.1;Parent=gene-C9E96_RS18805;Dbxref=GenBank:WP_000434302.1;Name=WP_000434302.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerD;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461960.1;locus_tag=C9E96_RS18805;product=site-specific tyrosine recombinase XerD;protein_id=WP_000434302.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	120196	120909	.	+	.	ID=gene-C9E96_RS18810;Name=dsbC;gbkey=Gene;gene=dsbC;gene_biotype=protein_coding;locus_tag=C9E96_RS18810;old_locus_tag=C9E96_19310
NZ_PYJX01000189.1	Protein Homology	CDS	120196	120909	.	+	0	ID=cds-WP_000745614.1;Parent=gene-C9E96_RS18810;Dbxref=GenBank:WP_000745614.1;Name=WP_000745614.1;Ontology_term=GO:0042597;gbkey=CDS;gene=dsbC;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461959.1;locus_tag=C9E96_RS18810;product=bifunctional protein-disulfide isomerase/oxidoreductase DsbC;protein_id=WP_000745614.1;transl_table=11
NZ_PYJX01000189.1	RefSeq	gene	120915	121537	.	+	.	ID=gene-C9E96_RS18815;Name=C9E96_RS18815;end_range=121537,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18815;old_locus_tag=C9E96_19315;partial=true
NZ_PYJX01000189.1	Protein Homology	CDS	120915	121537	.	+	0	ID=cds-WP_210114528.1;Parent=gene-C9E96_RS18815;Dbxref=GenBank:WP_210114528.1;Name=WP_210114528.1;end_range=121537,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461958.1;locus_tag=C9E96_RS18815;partial=true;product=DHH family phosphoesterase;protein_id=WP_210114528.1;transl_table=11
##sequence-region NZ_PYJX01000081.1 1 32543
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000081.1	RefSeq	region	1	32543	.	+	.	ID=NZ_PYJX01000081.1:1..32543;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000081.1	RefSeq	gene	1	327	.	-	.	ID=gene-C9E96_RS06865;Name=C9E96_RS06865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06865;old_locus_tag=C9E96_07030;partial=true;start_range=.,1
NZ_PYJX01000081.1	Protein Homology	CDS	1	327	.	-	0	ID=cds-WP_245306426.1;Parent=gene-C9E96_RS06865;Dbxref=GenBank:WP_245306426.1;Name=WP_245306426.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707946.2;locus_tag=C9E96_RS06865;partial=true;product=NUDIX domain-containing protein;protein_id=WP_245306426.1;start_range=.,1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	330	1295	.	-	.	ID=gene-C9E96_RS06870;Name=fcl;gbkey=Gene;gene=fcl;gene_biotype=protein_coding;gene_synonym=wcaG,yefB;locus_tag=C9E96_RS06870;old_locus_tag=C9E96_07035
NZ_PYJX01000081.1	Protein Homology	CDS	330	1295	.	-	0	ID=cds-WP_001041704.1;Parent=gene-C9E96_RS06870;Dbxref=GenBank:WP_001041704.1;Name=WP_001041704.1;Ontology_term=GO:0042351,GO:0016853,GO:0050577;gbkey=CDS;gene=fcl;go_function=isomerase activity|0016853||IEA,GDP-L-fucose synthase activity|0050577||IEA;go_process='de novo' GDP-L-fucose biosynthetic process|0042351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461053.1;locus_tag=C9E96_RS06870;product=GDP-L-fucose synthase;protein_id=WP_001041704.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	1298	2419	.	-	.	ID=gene-C9E96_RS06875;Name=gmd;gbkey=Gene;gene=gmd;gene_biotype=protein_coding;locus_tag=C9E96_RS06875;old_locus_tag=C9E96_07040
NZ_PYJX01000081.1	Protein Homology	CDS	1298	2419	.	-	0	ID=cds-WP_023993375.1;Parent=gene-C9E96_RS06875;Dbxref=GenBank:WP_023993375.1;Name=WP_023993375.1;Ontology_term=GO:0000271,GO:0019673,GO:0008446;gbkey=CDS;gene=gmd;go_function=GDP-mannose 4%2C6-dehydratase activity|0008446||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA,GDP-mannose metabolic process|0019673||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128297.1;locus_tag=C9E96_RS06875;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_023993375.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	2443	2997	.	-	.	ID=gene-C9E96_RS06880;Name=wcaF;gbkey=Gene;gene=wcaF;gene_biotype=protein_coding;locus_tag=C9E96_RS06880;old_locus_tag=C9E96_07045
NZ_PYJX01000081.1	Protein Homology	CDS	2443	2997	.	-	0	ID=cds-WP_001153603.1;Parent=gene-C9E96_RS06880;Dbxref=GenBank:WP_001153603.1;Name=WP_001153603.1;gbkey=CDS;gene=wcaF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461055.1;locus_tag=C9E96_RS06880;product=colanic acid biosynthesis acetyltransferase WcaF;protein_id=WP_001153603.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	3013	3759	.	-	.	ID=gene-C9E96_RS06885;Name=wcaE;gbkey=Gene;gene=wcaE;gene_biotype=protein_coding;locus_tag=C9E96_RS06885;old_locus_tag=C9E96_07050
NZ_PYJX01000081.1	Protein Homology	CDS	3013	3759	.	-	0	ID=cds-WP_000480134.1;Parent=gene-C9E96_RS06885;Dbxref=GenBank:WP_000480134.1;Name=WP_000480134.1;gbkey=CDS;gene=wcaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461056.1;locus_tag=C9E96_RS06885;product=colanic acid biosynthesis glycosyltransferase WcaE;protein_id=WP_000480134.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	3772	4986	.	-	.	ID=gene-C9E96_RS06890;Name=wcaD;gbkey=Gene;gene=wcaD;gene_biotype=protein_coding;locus_tag=C9E96_RS06890;old_locus_tag=C9E96_07055
NZ_PYJX01000081.1	Protein Homology	CDS	3772	4986	.	-	0	ID=cds-WP_000091392.1;Parent=gene-C9E96_RS06890;Dbxref=GenBank:WP_000091392.1;Name=WP_000091392.1;gbkey=CDS;gene=wcaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461057.1;locus_tag=C9E96_RS06890;product=colanic acid polymerase WcaD;protein_id=WP_000091392.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	4961	6178	.	-	.	ID=gene-C9E96_RS06895;Name=wcaC;gbkey=Gene;gene=wcaC;gene_biotype=protein_coding;locus_tag=C9E96_RS06895;old_locus_tag=C9E96_07060
NZ_PYJX01000081.1	Protein Homology	CDS	4961	6178	.	-	0	ID=cds-WP_017466013.1;Parent=gene-C9E96_RS06895;Dbxref=GenBank:WP_017466013.1;Name=WP_017466013.1;Ontology_term=GO:0016757;gbkey=CDS;gene=wcaC;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461058.1;locus_tag=C9E96_RS06895;product=colanic acid biosynthesis glycosyltransferase WcaC;protein_id=WP_017466013.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	6175	6663	.	-	.	ID=gene-C9E96_RS06900;Name=wcaB;gbkey=Gene;gene=wcaB;gene_biotype=protein_coding;locus_tag=C9E96_RS06900;old_locus_tag=C9E96_07065
NZ_PYJX01000081.1	Protein Homology	CDS	6175	6663	.	-	0	ID=cds-WP_000888724.1;Parent=gene-C9E96_RS06900;Dbxref=GenBank:WP_000888724.1;Name=WP_000888724.1;gbkey=CDS;gene=wcaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461059.1;locus_tag=C9E96_RS06900;product=colanic acid biosynthesis acetyltransferase WcaB;protein_id=WP_000888724.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	6666	7508	.	-	.	ID=gene-C9E96_RS06905;Name=wcaA;gbkey=Gene;gene=wcaA;gene_biotype=protein_coding;locus_tag=C9E96_RS06905;old_locus_tag=C9E96_07070
NZ_PYJX01000081.1	Protein Homology	CDS	6666	7508	.	-	0	ID=cds-WP_000205695.1;Parent=gene-C9E96_RS06905;Dbxref=GenBank:WP_000205695.1;Name=WP_000205695.1;gbkey=CDS;gene=wcaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461060.1;locus_tag=C9E96_RS06905;product=colanic acid biosynthesis glycosyltransferase WcaA;protein_id=WP_000205695.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	7595	9754	.	-	.	ID=gene-C9E96_RS06910;Name=wzc;gbkey=Gene;gene=wzc;gene_biotype=protein_coding;locus_tag=C9E96_RS06910;old_locus_tag=C9E96_07075
NZ_PYJX01000081.1	Protein Homology	CDS	7595	9754	.	-	0	ID=cds-WP_135494015.1;Parent=gene-C9E96_RS06910;Dbxref=GenBank:WP_135494015.1;Name=WP_135494015.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;gene=wzc;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461061.1;locus_tag=C9E96_RS06910;product=tyrosine-protein kinase Wzc;protein_id=WP_135494015.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	9751	10200	.	-	.	ID=gene-C9E96_RS06915;Name=wzb;gbkey=Gene;gene=wzb;gene_biotype=protein_coding;locus_tag=C9E96_RS06915;old_locus_tag=C9E96_07080
NZ_PYJX01000081.1	Protein Homology	CDS	9751	10200	.	-	0	ID=cds-WP_000482224.1;Parent=gene-C9E96_RS06915;Dbxref=GenBank:WP_000482224.1;Name=WP_000482224.1;gbkey=CDS;gene=wzb;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461062.1;locus_tag=C9E96_RS06915;product=low molecular weight protein-tyrosine-phosphatase Wzb;protein_id=WP_000482224.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	10206	11345	.	-	.	ID=gene-C9E96_RS06920;Name=C9E96_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06920;old_locus_tag=C9E96_07085
NZ_PYJX01000081.1	Protein Homology	CDS	10206	11345	.	-	0	ID=cds-WP_000978077.1;Parent=gene-C9E96_RS06920;Dbxref=GenBank:WP_000978077.1;Name=WP_000978077.1;Ontology_term=GO:0015774,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=polysaccharide transport|0015774||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461063.1;locus_tag=C9E96_RS06920;product=polysaccharide export protein;protein_id=WP_000978077.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	12020	13600	.	+	.	ID=gene-C9E96_RS06925;Name=C9E96_RS06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06925;old_locus_tag=C9E96_07095
NZ_PYJX01000081.1	Protein Homology	CDS	12020	13600	.	+	0	ID=cds-WP_000454713.1;Parent=gene-C9E96_RS06925;Dbxref=GenBank:WP_000454713.1;Name=WP_000454713.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461064.1;locus_tag=C9E96_RS06925;product=TerC family protein;protein_id=WP_000454713.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	13686	15542	.	-	.	ID=gene-C9E96_RS06930;Name=asmA;gbkey=Gene;gene=asmA;gene_biotype=protein_coding;locus_tag=C9E96_RS06930;old_locus_tag=C9E96_07100
NZ_PYJX01000081.1	Protein Homology	CDS	13686	15542	.	-	0	ID=cds-WP_135494017.1;Parent=gene-C9E96_RS06930;Dbxref=GenBank:WP_135494017.1;Name=WP_135494017.1;gbkey=CDS;gene=asmA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461065.1;locus_tag=C9E96_RS06930;product=outer membrane assembly protein AsmA;protein_id=WP_135494017.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	15581	16162	.	-	.	ID=gene-C9E96_RS06935;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=C9E96_RS06935;old_locus_tag=C9E96_07105
NZ_PYJX01000081.1	Protein Homology	CDS	15581	16162	.	-	0	ID=cds-WP_001234783.1;Parent=gene-C9E96_RS06935;Dbxref=GenBank:WP_001234783.1;Name=WP_001234783.1;Ontology_term=GO:0006229,GO:0008829;gbkey=CDS;gene=dcd;go_function=dCTP deaminase activity|0008829||IEA;go_process=dUTP biosynthetic process|0006229||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004942378.1;locus_tag=C9E96_RS06935;product=dCTP deaminase;protein_id=WP_001234783.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	16253	16894	.	-	.	ID=gene-C9E96_RS06940;Name=udk;gbkey=Gene;gene=udk;gene_biotype=protein_coding;locus_tag=C9E96_RS06940;old_locus_tag=C9E96_07110
NZ_PYJX01000081.1	Protein Homology	CDS	16253	16894	.	-	0	ID=cds-WP_000132082.1;Parent=gene-C9E96_RS06940;Dbxref=GenBank:WP_000132082.1;Name=WP_000132082.1;Ontology_term=GO:0004849;gbkey=CDS;gene=udk;go_function=uridine kinase activity|0004849||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461067.1;locus_tag=C9E96_RS06940;product=uridine kinase;protein_id=WP_000132082.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	17225	20215	.	+	.	ID=gene-C9E96_RS06945;Name=C9E96_RS06945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06945;old_locus_tag=C9E96_07115
NZ_PYJX01000081.1	Protein Homology	CDS	17225	20215	.	+	0	ID=cds-WP_080203696.1;Parent=gene-C9E96_RS06945;Dbxref=GenBank:WP_080203696.1;Name=WP_080203696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461068.1;locus_tag=C9E96_RS06945;product=MASE1 domain-containing protein;protein_id=WP_080203696.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	20183	21052	.	-	.	ID=gene-C9E96_RS06950;Name=alkA;gbkey=Gene;gene=alkA;gene_biotype=protein_coding;locus_tag=C9E96_RS06950;old_locus_tag=C9E96_07120
NZ_PYJX01000081.1	Protein Homology	CDS	20183	21052	.	-	0	ID=cds-WP_080203697.1;Parent=gene-C9E96_RS06950;Dbxref=GenBank:WP_080203697.1;Name=WP_080203697.1;Ontology_term=GO:0006281,GO:0003824;gbkey=CDS;gene=alkA;go_function=catalytic activity|0003824||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461069.1;locus_tag=C9E96_RS06950;product=DNA-3-methyladenine glycosylase 2;protein_id=WP_080203697.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	21186	22538	.	+	.	ID=gene-C9E96_RS06955;Name=yegD;gbkey=Gene;gene=yegD;gene_biotype=protein_coding;locus_tag=C9E96_RS06955;old_locus_tag=C9E96_07130
NZ_PYJX01000081.1	Protein Homology	CDS	21186	22538	.	+	0	ID=cds-WP_000469637.1;Parent=gene-C9E96_RS06955;Dbxref=GenBank:WP_000469637.1;Name=WP_000469637.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=yegD;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461070.1;locus_tag=C9E96_RS06955;product=molecular chaperone;protein_id=WP_000469637.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	22637	22696	.	-	.	ID=gene-C9E96_RS06960;Name=ibsA;gbkey=Gene;gene=ibsA;gene_biotype=protein_coding;locus_tag=C9E96_RS06960;old_locus_tag=C9E96_07135
NZ_PYJX01000081.1	Protein Homology	CDS	22637	22696	.	-	0	ID=cds-WP_001805500.1;Parent=gene-C9E96_RS06960;Dbxref=GenBank:WP_001805500.1;Name=WP_001805500.1;gbkey=CDS;gene=ibsA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791247.1;locus_tag=C9E96_RS06960;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_001805500.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	pseudogene	22979	24214	.	+	.	ID=gene-C9E96_RS06965;Name=mdtA;end_range=24214,.;gbkey=Gene;gene=mdtA;gene_biotype=pseudogene;locus_tag=C9E96_RS06965;old_locus_tag=C9E96_07140;partial=true;pseudo=true
NZ_PYJX01000081.1	Protein Homology	CDS	22979	24214	.	+	0	ID=cds-C9E96_RS06965;Parent=gene-C9E96_RS06965;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=24214,.;gbkey=CDS;gene=mdtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461071.1;locus_tag=C9E96_RS06965;partial=true;product=multidrug efflux RND transporter subunit MdtA;pseudo=true;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	24220	27342	.	+	.	ID=gene-C9E96_RS06970;Name=mdtB;gbkey=Gene;gene=mdtB;gene_biotype=protein_coding;locus_tag=C9E96_RS06970;old_locus_tag=C9E96_07145
NZ_PYJX01000081.1	Protein Homology	CDS	24220	27342	.	+	0	ID=cds-WP_135494019.1;Parent=gene-C9E96_RS06970;Dbxref=GenBank:WP_135494019.1;Name=WP_135494019.1;gbkey=CDS;gene=mdtB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461072.1;locus_tag=C9E96_RS06970;product=multidrug efflux RND transporter permease subunit MdtB;protein_id=WP_135494019.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	27343	30423	.	+	.	ID=gene-C9E96_RS06975;Name=mdtC;gbkey=Gene;gene=mdtC;gene_biotype=protein_coding;locus_tag=C9E96_RS06975;old_locus_tag=C9E96_07150
NZ_PYJX01000081.1	Protein Homology	CDS	27343	30423	.	+	0	ID=cds-WP_135494021.1;Parent=gene-C9E96_RS06975;Dbxref=GenBank:WP_135494021.1;Name=WP_135494021.1;gbkey=CDS;gene=mdtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461073.1;locus_tag=C9E96_RS06975;product=multidrug efflux RND transporter permease subunit MdtC;protein_id=WP_135494021.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	gene	30420	31832	.	+	.	ID=gene-C9E96_RS06980;Name=C9E96_RS06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06980;old_locus_tag=C9E96_07155
NZ_PYJX01000081.1	Protein Homology	CDS	30420	31832	.	+	0	ID=cds-WP_023993382.1;Parent=gene-C9E96_RS06980;Dbxref=GenBank:WP_023993382.1;Name=WP_023993382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461074.1;locus_tag=C9E96_RS06980;product=MFS transporter;protein_id=WP_023993382.1;transl_table=11
NZ_PYJX01000081.1	RefSeq	pseudogene	31832	32476	.	+	.	ID=gene-C9E96_RS06985;Name=C9E96_RS06985;end_range=32476,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS06985;old_locus_tag=C9E96_07160;partial=true;pseudo=true
NZ_PYJX01000081.1	Protein Homology	CDS	31832	32476	.	+	0	ID=cds-C9E96_RS06985;Parent=gene-C9E96_RS06985;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0007165,GO:0016020;end_range=32476,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461075.1;locus_tag=C9E96_RS06985;partial=true;product=HAMP domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000186.1 1 32471
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000186.1	RefSeq	region	1	32471	.	+	.	ID=NZ_PYJX01000186.1:1..32471;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000186.1	RefSeq	gene	175	1806	.	-	.	ID=gene-C9E96_RS17560;Name=C9E96_RS17560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17560;old_locus_tag=C9E96_18020
NZ_PYJX01000186.1	Protein Homology	CDS	175	1806	.	-	0	ID=cds-WP_023994342.1;Parent=gene-C9E96_RS17560;Dbxref=GenBank:WP_023994342.1;Name=WP_023994342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463359.1;locus_tag=C9E96_RS17560;product=class I SAM-dependent methyltransferase;protein_id=WP_023994342.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	1811	2068	.	-	.	ID=gene-C9E96_RS17565;Name=C9E96_RS17565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17565;old_locus_tag=C9E96_18025
NZ_PYJX01000186.1	Protein Homology	CDS	1811	2068	.	-	0	ID=cds-WP_001054380.1;Parent=gene-C9E96_RS17565;Dbxref=GenBank:WP_001054380.1;Name=WP_001054380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463360.1;locus_tag=C9E96_RS17565;product=YjhX family toxin;protein_id=WP_001054380.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	2556	3164	.	+	.	ID=gene-C9E96_RS17575;Name=C9E96_RS17575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17575;old_locus_tag=C9E96_18040
NZ_PYJX01000186.1	Protein Homology	CDS	2556	3164	.	+	0	ID=cds-WP_023993203.1;Parent=gene-C9E96_RS17575;Dbxref=GenBank:WP_023993203.1;Name=WP_023993203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463361.1;locus_tag=C9E96_RS17575;product=DUF1062 domain-containing protein;protein_id=WP_023993203.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	3518	4429	.	+	.	ID=gene-C9E96_RS17580;Name=C9E96_RS17580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17580;old_locus_tag=C9E96_18045
NZ_PYJX01000186.1	Protein Homology	CDS	3518	4429	.	+	0	ID=cds-WP_000556768.1;Parent=gene-C9E96_RS17580;Dbxref=GenBank:WP_000556768.1;Name=WP_000556768.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463363.1;locus_tag=C9E96_RS17580;product=STM4504/CBY_0614 family protein;protein_id=WP_000556768.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	4634	5095	.	+	.	ID=gene-C9E96_RS17585;Name=C9E96_RS17585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17585;old_locus_tag=C9E96_18050
NZ_PYJX01000186.1	Protein Homology	CDS	4634	5095	.	+	0	ID=cds-WP_001654330.1;Parent=gene-C9E96_RS17585;Dbxref=GenBank:WP_001654330.1;Name=WP_001654330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463364.1;locus_tag=C9E96_RS17585;product=DUF302 domain-containing protein;protein_id=WP_001654330.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	5092	5766	.	-	.	ID=gene-C9E96_RS17590;Name=C9E96_RS17590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17590;old_locus_tag=C9E96_18055
NZ_PYJX01000186.1	Protein Homology	CDS	5092	5766	.	-	0	ID=cds-WP_023993202.1;Parent=gene-C9E96_RS17590;Dbxref=GenBank:WP_023993202.1;Name=WP_023993202.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463365.1;locus_tag=C9E96_RS17590;product=dienelactone hydrolase family protein;protein_id=WP_023993202.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	6116	6889	.	+	.	ID=gene-C9E96_RS17595;Name=uxuR;gbkey=Gene;gene=uxuR;gene_biotype=protein_coding;locus_tag=C9E96_RS17595;old_locus_tag=C9E96_18065
NZ_PYJX01000186.1	Protein Homology	CDS	6116	6889	.	+	0	ID=cds-WP_000841652.1;Parent=gene-C9E96_RS17595;Dbxref=GenBank:WP_000841652.1;Name=WP_000841652.1;gbkey=CDS;gene=uxuR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463366.1;locus_tag=C9E96_RS17595;product=Uxu operon transcriptional regulator;protein_id=WP_000841652.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	6890	7903	.	-	.	ID=gene-C9E96_RS17600;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=C9E96_RS17600;old_locus_tag=C9E96_18070
NZ_PYJX01000186.1	Protein Homology	CDS	6890	7903	.	-	0	ID=cds-WP_001094611.1;Parent=gene-C9E96_RS17600;Dbxref=GenBank:WP_001094611.1;Name=WP_001094611.1;Ontology_term=GO:0006436,GO:0000166,GO:0004830,GO:0005524;gbkey=CDS;gene=trpS;go_function=nucleotide binding|0000166||IEA,tryptophan-tRNA ligase activity|0004830||IEA,ATP binding|0005524||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463367.1;locus_tag=C9E96_RS17600;product=tryptophan--tRNA ligase;protein_id=WP_001094611.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	8620	9150	.	+	.	ID=gene-C9E96_RS17605;Name=C9E96_RS17605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17605;old_locus_tag=C9E96_18075
NZ_PYJX01000186.1	Protein Homology	CDS	8620	9150	.	+	0	ID=cds-WP_000907671.1;Parent=gene-C9E96_RS17605;Dbxref=GenBank:WP_000907671.1;Name=WP_000907671.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463368.3;locus_tag=C9E96_RS17605;product=Hcp family type VI secretion system effector;protein_id=WP_000907671.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	9389	10123	.	+	.	ID=gene-C9E96_RS17610;Name=C9E96_RS17610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17610;old_locus_tag=C9E96_18085
NZ_PYJX01000186.1	Protein Homology	CDS	9389	10123	.	+	0	ID=cds-WP_000683247.1;Parent=gene-C9E96_RS17610;Dbxref=GenBank:WP_000683247.1;Name=WP_000683247.1;Ontology_term=GO:0047661;gbkey=CDS;go_function=amino-acid racemase activity|0047661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463369.1;locus_tag=C9E96_RS17610;product=aspartate/glutamate racemase family protein;protein_id=WP_000683247.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	10129	11037	.	-	.	ID=gene-C9E96_RS17615;Name=hypT;gbkey=Gene;gene=hypT;gene_biotype=protein_coding;gene_synonym=qseD;locus_tag=C9E96_RS17615;old_locus_tag=C9E96_18090
NZ_PYJX01000186.1	Protein Homology	CDS	10129	11037	.	-	0	ID=cds-WP_080203718.1;Parent=gene-C9E96_RS17615;Dbxref=GenBank:WP_080203718.1;Name=WP_080203718.1;gbkey=CDS;gene=hypT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463370.1;locus_tag=C9E96_RS17615;product=hypochlorite stress DNA-binding transcriptional regulator HypT;protein_id=WP_080203718.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	11156	12328	.	-	.	ID=gene-C9E96_RS17620;Name=iadA;gbkey=Gene;gene=iadA;gene_biotype=protein_coding;locus_tag=C9E96_RS17620;old_locus_tag=C9E96_18095
NZ_PYJX01000186.1	Protein Homology	CDS	11156	12328	.	-	0	ID=cds-WP_001821328.1;Parent=gene-C9E96_RS17620;Dbxref=GenBank:WP_001821328.1;Name=WP_001821328.1;Ontology_term=GO:0008798;gbkey=CDS;gene=iadA;go_function=beta-aspartyl-peptidase activity|0008798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463371.1;locus_tag=C9E96_RS17620;product=beta-aspartyl-peptidase;protein_id=WP_001821328.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	12341	12802	.	-	.	ID=gene-C9E96_RS17625;Name=C9E96_RS17625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17625;old_locus_tag=C9E96_18100
NZ_PYJX01000186.1	Protein Homology	CDS	12341	12802	.	-	0	ID=cds-WP_000211979.1;Parent=gene-C9E96_RS17625;Dbxref=GenBank:WP_000211979.1;Name=WP_000211979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463372.1;locus_tag=C9E96_RS17625;product=YjiG family protein;protein_id=WP_000211979.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	12799	13470	.	-	.	ID=gene-C9E96_RS17630;Name=C9E96_RS17630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17630;old_locus_tag=C9E96_18105
NZ_PYJX01000186.1	Protein Homology	CDS	12799	13470	.	-	0	ID=cds-WP_135494459.1;Parent=gene-C9E96_RS17630;Dbxref=GenBank:WP_135494459.1;Name=WP_135494459.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418750.2;locus_tag=C9E96_RS17630;product=YjiH family protein;protein_id=WP_135494459.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	14340	15524	.	-	.	ID=gene-C9E96_RS17635;Name=C9E96_RS17635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17635;old_locus_tag=C9E96_18115
NZ_PYJX01000186.1	Protein Homology	CDS	14340	15524	.	-	0	ID=cds-WP_135494461.1;Parent=gene-C9E96_RS17635;Dbxref=GenBank:WP_135494461.1;Name=WP_135494461.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463374.1;locus_tag=C9E96_RS17635;product=MFS transporter;protein_id=WP_135494461.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	15733	17004	.	-	.	ID=gene-C9E96_RS17640;Name=C9E96_RS17640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17640;old_locus_tag=C9E96_18120
NZ_PYJX01000186.1	Protein Homology	CDS	15733	17004	.	-	0	ID=cds-WP_023993201.1;Parent=gene-C9E96_RS17640;Dbxref=GenBank:WP_023993201.1;Name=WP_023993201.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463375.1;locus_tag=C9E96_RS17640;product=DUF445 domain-containing protein;protein_id=WP_023993201.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	17091	18332	.	-	.	ID=gene-C9E96_RS17645;Name=mdtM;gbkey=Gene;gene=mdtM;gene_biotype=protein_coding;locus_tag=C9E96_RS17645;old_locus_tag=C9E96_18125
NZ_PYJX01000186.1	Protein Homology	CDS	17091	18332	.	-	0	ID=cds-WP_080203719.1;Parent=gene-C9E96_RS17645;Dbxref=GenBank:WP_080203719.1;Name=WP_080203719.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mdtM;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463376.1;locus_tag=C9E96_RS17645;product=multidrug efflux MFS transporter MdtM;protein_id=WP_080203719.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	18811	19764	.	+	.	ID=gene-C9E96_RS17650;Name=C9E96_RS17650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17650;old_locus_tag=C9E96_18130
NZ_PYJX01000186.1	Protein Homology	CDS	18811	19764	.	+	0	ID=cds-WP_000750003.1;Parent=gene-C9E96_RS17650;Dbxref=GenBank:WP_000750003.1;Name=WP_000750003.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012548938.1;locus_tag=C9E96_RS17650;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_000750003.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	19945	21315	.	+	.	ID=gene-C9E96_RS17655;Name=C9E96_RS17655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17655;old_locus_tag=C9E96_18135
NZ_PYJX01000186.1	Protein Homology	CDS	19945	21315	.	+	0	ID=cds-WP_135494463.1;Parent=gene-C9E96_RS17655;Dbxref=GenBank:WP_135494463.1;Name=WP_135494463.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463378.1;locus_tag=C9E96_RS17655;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_135494463.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	21411	21554	.	-	.	ID=gene-C9E96_RS17660;Name=C9E96_RS17660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17660;old_locus_tag=C9E96_18140
NZ_PYJX01000186.1	Protein Homology	CDS	21411	21554	.	-	0	ID=cds-WP_001541460.1;Parent=gene-C9E96_RS17660;Dbxref=GenBank:WP_001541460.1;Name=WP_001541460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463379.1;locus_tag=C9E96_RS17660;product=hypothetical protein;protein_id=WP_001541460.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	21521	21685	.	+	.	ID=gene-C9E96_RS17665;Name=yjiS;gbkey=Gene;gene=yjiS;gene_biotype=protein_coding;locus_tag=C9E96_RS17665;old_locus_tag=C9E96_18145
NZ_PYJX01000186.1	Protein Homology	CDS	21521	21685	.	+	0	ID=cds-WP_000397917.1;Parent=gene-C9E96_RS17665;Dbxref=GenBank:WP_000397917.1;Name=WP_000397917.1;gbkey=CDS;gene=yjiS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463380.1;locus_tag=C9E96_RS17665;product=DUF1127 domain-containing protein YjiS;protein_id=WP_000397917.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	21760	22461	.	-	.	ID=gene-C9E96_RS17670;Name=C9E96_RS17670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17670;old_locus_tag=C9E96_18150
NZ_PYJX01000186.1	Protein Homology	CDS	21760	22461	.	-	0	ID=cds-WP_001237617.1;Parent=gene-C9E96_RS17670;Dbxref=GenBank:WP_001237617.1;Name=WP_001237617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463381.1;locus_tag=C9E96_RS17670;product=hypothetical protein;protein_id=WP_001237617.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	22535	22867	.	-	.	ID=gene-C9E96_RS17675;Name=symE;gbkey=Gene;gene=symE;gene_biotype=protein_coding;locus_tag=C9E96_RS17675;old_locus_tag=C9E96_18155
NZ_PYJX01000186.1	Protein Homology	CDS	22535	22867	.	-	0	ID=cds-WP_080203721.1;Parent=gene-C9E96_RS17675;Dbxref=GenBank:WP_080203721.1;Name=WP_080203721.1;gbkey=CDS;gene=symE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463382.1;locus_tag=C9E96_RS17675;product=endoribonuclease SymE;protein_id=WP_080203721.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	23193	23834	.	-	.	ID=gene-C9E96_RS17680;Name=C9E96_RS17680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17680;old_locus_tag=C9E96_18160
NZ_PYJX01000186.1	Protein Homology	CDS	23193	23834	.	-	0	ID=cds-WP_023227822.1;Parent=gene-C9E96_RS17680;Dbxref=GenBank:WP_023227822.1;Name=WP_023227822.1;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001727645.1;locus_tag=C9E96_RS17680;product=LysE family translocator;protein_id=WP_023227822.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	23882	24697	.	-	.	ID=gene-C9E96_RS17685;Name=C9E96_RS17685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17685;old_locus_tag=C9E96_18165
NZ_PYJX01000186.1	Protein Homology	CDS	23882	24697	.	-	0	ID=cds-WP_001627708.1;Parent=gene-C9E96_RS17685;Dbxref=GenBank:WP_001627708.1;Name=WP_001627708.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001128428.1;locus_tag=C9E96_RS17685;product=AraC family transcriptional regulator;protein_id=WP_001627708.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	24735	25691	.	-	.	ID=gene-C9E96_RS17690;Name=yjiA;gbkey=Gene;gene=yjiA;gene_biotype=protein_coding;locus_tag=C9E96_RS17690;old_locus_tag=C9E96_18170
NZ_PYJX01000186.1	Protein Homology	CDS	24735	25691	.	-	0	ID=cds-WP_023993199.1;Parent=gene-C9E96_RS17690;Dbxref=GenBank:WP_023993199.1;Name=WP_023993199.1;gbkey=CDS;gene=yjiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463389.1;locus_tag=C9E96_RS17690;product=GTPase;protein_id=WP_023993199.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	25702	25905	.	-	.	ID=gene-C9E96_RS17695;Name=C9E96_RS17695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17695;old_locus_tag=C9E96_18175
NZ_PYJX01000186.1	Protein Homology	CDS	25702	25905	.	-	0	ID=cds-WP_000460616.1;Parent=gene-C9E96_RS17695;Dbxref=GenBank:WP_000460616.1;Name=WP_000460616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463390.1;locus_tag=C9E96_RS17695;product=YbdD/YjiX family protein;protein_id=WP_000460616.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	26000	28150	.	-	.	ID=gene-C9E96_RS17700;Name=btsT;gbkey=Gene;gene=btsT;gene_biotype=protein_coding;locus_tag=C9E96_RS17700;old_locus_tag=C9E96_18180
NZ_PYJX01000186.1	Protein Homology	CDS	26000	28150	.	-	0	ID=cds-WP_135494465.1;Parent=gene-C9E96_RS17700;Dbxref=GenBank:WP_135494465.1;Name=WP_135494465.1;gbkey=CDS;gene=btsT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463391.1;locus_tag=C9E96_RS17700;product=pyruvate/proton symporter BtsT;protein_id=WP_135494465.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	28517	30178	.	+	.	ID=gene-C9E96_RS17705;Name=tsr;gbkey=Gene;gene=tsr;gene_biotype=protein_coding;locus_tag=C9E96_RS17705;old_locus_tag=C9E96_18185
NZ_PYJX01000186.1	Protein Homology	CDS	28517	30178	.	+	0	ID=cds-WP_135494467.1;Parent=gene-C9E96_RS17705;Dbxref=GenBank:WP_135494467.1;Name=WP_135494467.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;gene=tsr;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463392.1;locus_tag=C9E96_RS17705;product=methyl-accepting chemotaxis protein;protein_id=WP_135494467.1;transl_table=11
NZ_PYJX01000186.1	RefSeq	gene	30347	32471	.	-	.	ID=gene-C9E96_RS17710;Name=opgB;end_range=32471,.;gbkey=Gene;gene=opgB;gene_biotype=protein_coding;locus_tag=C9E96_RS17710;old_locus_tag=C9E96_18190;partial=true
NZ_PYJX01000186.1	Protein Homology	CDS	30347	32471	.	-	1	ID=cds-WP_167852898.1;Parent=gene-C9E96_RS17710;Dbxref=GenBank:WP_167852898.1;Name=WP_167852898.1;Ontology_term=GO:0008484;end_range=32471,.;gbkey=CDS;gene=opgB;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418779.2;locus_tag=C9E96_RS17710;partial=true;product=phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase;protein_id=WP_167852898.1;transl_table=11
##sequence-region NZ_PYJX01000166.1 1 32136
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000166.1	RefSeq	region	1	32136	.	+	.	ID=NZ_PYJX01000166.1:1..32136;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000166.1	RefSeq	gene	1	774	.	+	.	ID=gene-C9E96_RS15560;Name=C9E96_RS15560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15560;old_locus_tag=C9E96_15945;partial=true;start_range=.,1
NZ_PYJX01000166.1	Protein Homology	CDS	1	774	.	+	0	ID=cds-WP_245306433.1;Parent=gene-C9E96_RS15560;Dbxref=GenBank:WP_245306433.1;Name=WP_245306433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016150274.1;locus_tag=C9E96_RS15560;partial=true;product=SrfA family protein;protein_id=WP_245306433.1;start_range=.,1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	779	3760	.	+	.	ID=gene-C9E96_RS15565;Name=C9E96_RS15565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15565;old_locus_tag=C9E96_15950
NZ_PYJX01000166.1	Protein Homology	CDS	779	3760	.	+	0	ID=cds-WP_000960830.1;Parent=gene-C9E96_RS15565;Dbxref=GenBank:WP_000960830.1;Name=WP_000960830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460553.1;locus_tag=C9E96_RS15565;product=virulence factor SrfB;protein_id=WP_000960830.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	3757	5901	.	+	.	ID=gene-C9E96_RS15570;Name=srfC;gbkey=Gene;gene=srfC;gene_biotype=protein_coding;locus_tag=C9E96_RS15570;old_locus_tag=C9E96_15955
NZ_PYJX01000166.1	Protein Homology	CDS	3757	5901	.	+	0	ID=cds-WP_135494364.1;Parent=gene-C9E96_RS15570;Dbxref=GenBank:WP_135494364.1;Name=WP_135494364.1;gbkey=CDS;gene=srfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460554.1;locus_tag=C9E96_RS15570;product=virulence-associated effector SrfC;protein_id=WP_135494364.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	5946	6119	.	-	.	ID=gene-C9E96_RS15575;Name=C9E96_RS15575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15575;old_locus_tag=C9E96_15960
NZ_PYJX01000166.1	Protein Homology	CDS	5946	6119	.	-	0	ID=cds-WP_001522647.1;Parent=gene-C9E96_RS15575;Dbxref=GenBank:WP_001522647.1;Name=WP_001522647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415962.2;locus_tag=C9E96_RS15575;product=GhoT/OrtT family toxin;protein_id=WP_001522647.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	6318	6413	.	+	.	ID=gene-C9E96_RS15580;Name=yncL;gbkey=Gene;gene=yncL;gene_biotype=protein_coding;locus_tag=C9E96_RS15580;old_locus_tag=C9E96_15965
NZ_PYJX01000166.1	Protein Homology	CDS	6318	6413	.	+	0	ID=cds-WP_001103198.1;Parent=gene-C9E96_RS15580;Dbxref=GenBank:WP_001103198.1;Name=WP_001103198.1;gbkey=CDS;gene=yncL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001103198.1;locus_tag=C9E96_RS15580;product=stress response membrane protein YncL;protein_id=WP_001103198.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	6518	7963	.	-	.	ID=gene-C9E96_RS15585;Name=patD;gbkey=Gene;gene=patD;gene_biotype=protein_coding;locus_tag=C9E96_RS15585;old_locus_tag=C9E96_15970
NZ_PYJX01000166.1	Protein Homology	CDS	6518	7963	.	-	0	ID=cds-WP_000158094.1;Parent=gene-C9E96_RS15585;Dbxref=GenBank:WP_000158094.1;Name=WP_000158094.1;Ontology_term=GO:0009447,GO:0019145,GO:0051287;gbkey=CDS;gene=patD;go_function=aminobutyraldehyde dehydrogenase (NAD+) activity|0019145||IEA,NAD binding|0051287||IEA;go_process=putrescine catabolic process|0009447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460556.3;locus_tag=C9E96_RS15585;product=aminobutyraldehyde dehydrogenase;protein_id=WP_000158094.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	8078	9502	.	-	.	ID=gene-C9E96_RS15590;Name=ycdR;gbkey=Gene;gene=ycdR;gene_biotype=protein_coding;locus_tag=C9E96_RS15590;old_locus_tag=C9E96_15975
NZ_PYJX01000166.1	Protein Homology	CDS	8078	9502	.	-	0	ID=cds-WP_000760698.1;Parent=gene-C9E96_RS15590;Dbxref=GenBank:WP_000760698.1;Name=WP_000760698.1;gbkey=CDS;gene=ycdR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460557.1;locus_tag=C9E96_RS15590;product=GntR family transcriptional regulator YdcR;protein_id=WP_000760698.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	9638	10408	.	-	.	ID=gene-C9E96_RS15595;Name=C9E96_RS15595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15595;old_locus_tag=C9E96_15980
NZ_PYJX01000166.1	Protein Homology	CDS	9638	10408	.	-	0	ID=cds-WP_000237715.1;Parent=gene-C9E96_RS15595;Dbxref=GenBank:WP_000237715.1;Name=WP_000237715.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460558.1;locus_tag=C9E96_RS15595;product=M15 family metallopeptidase;protein_id=WP_000237715.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	pseudogene	10667	10897	.	-	.	ID=gene-C9E96_RS15600;Name=C9E96_RS15600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS15600;old_locus_tag=C9E96_15985;pseudo=true
NZ_PYJX01000166.1	Protein Homology	CDS	10667	10897	.	-	0	ID=cds-C9E96_RS15600;Parent=gene-C9E96_RS15600;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448018.1;locus_tag=C9E96_RS15600;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	10930	11328	.	-	.	ID=gene-C9E96_RS15605;Name=C9E96_RS15605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15605;old_locus_tag=C9E96_15990
NZ_PYJX01000166.1	Protein Homology	CDS	10930	11328	.	-	0	ID=cds-WP_000747901.1;Parent=gene-C9E96_RS15605;Dbxref=GenBank:WP_000747901.1;Name=WP_000747901.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460560.1;locus_tag=C9E96_RS15605;product=hypothetical protein;protein_id=WP_000747901.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	11844	12794	.	+	.	ID=gene-C9E96_RS15610;Name=sifB;gbkey=Gene;gene=sifB;gene_biotype=protein_coding;locus_tag=C9E96_RS15610;old_locus_tag=C9E96_15995
NZ_PYJX01000166.1	Protein Homology	CDS	11844	12794	.	+	0	ID=cds-WP_080203683.1;Parent=gene-C9E96_RS15610;Dbxref=GenBank:WP_080203683.1;Name=WP_080203683.1;gbkey=CDS;gene=sifB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460561.1;locus_tag=C9E96_RS15610;product=SPI-2 type III secretion system effector SifB;protein_id=WP_080203683.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	13067	13297	.	+	.	ID=gene-C9E96_RS15615;Name=C9E96_RS15615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15615;old_locus_tag=C9E96_16000
NZ_PYJX01000166.1	Protein Homology	CDS	13067	13297	.	+	0	ID=cds-WP_001537894.1;Parent=gene-C9E96_RS15615;Dbxref=GenBank:WP_001537894.1;Name=WP_001537894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460562.1;locus_tag=C9E96_RS15615;product=YncJ family protein;protein_id=WP_001537894.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	13298	15262	.	-	.	ID=gene-C9E96_RS15620;Name=C9E96_RS15620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15620;old_locus_tag=C9E96_16005
NZ_PYJX01000166.1	Protein Homology	CDS	13298	15262	.	-	0	ID=cds-WP_001249745.1;Parent=gene-C9E96_RS15620;Dbxref=GenBank:WP_001249745.1;Name=WP_001249745.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460563.1;locus_tag=C9E96_RS15620;product=peptidase U32 family protein;protein_id=WP_001249745.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	15341	15877	.	-	.	ID=gene-C9E96_RS15625;Name=C9E96_RS15625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15625;old_locus_tag=C9E96_16010
NZ_PYJX01000166.1	Protein Homology	CDS	15341	15877	.	-	0	ID=cds-WP_023208751.1;Parent=gene-C9E96_RS15625;Dbxref=GenBank:WP_023208751.1;Name=WP_023208751.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460564.1;locus_tag=C9E96_RS15625;product=helix-turn-helix domain-containing protein;protein_id=WP_023208751.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	15969	17147	.	+	.	ID=gene-C9E96_RS15630;Name=C9E96_RS15630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15630;old_locus_tag=C9E96_16015
NZ_PYJX01000166.1	Protein Homology	CDS	15969	17147	.	+	0	ID=cds-WP_045717715.1;Parent=gene-C9E96_RS15630;Dbxref=GenBank:WP_045717715.1;Name=WP_045717715.1;Ontology_term=GO:0042919,GO:0042925,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=benzoate transmembrane transporter activity|0042925||IEA;go_process=benzoate transport|0042919||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460565.1;locus_tag=C9E96_RS15630;product=benzoate/H(+) symporter BenE family transporter;protein_id=WP_045717715.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	17201	17869	.	-	.	ID=gene-C9E96_RS15635;Name=C9E96_RS15635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15635;old_locus_tag=C9E96_16020
NZ_PYJX01000166.1	Protein Homology	CDS	17201	17869	.	-	0	ID=cds-WP_080203682.1;Parent=gene-C9E96_RS15635;Dbxref=GenBank:WP_080203682.1;Name=WP_080203682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460566.1;locus_tag=C9E96_RS15635;product=DUF3313 domain-containing protein;protein_id=WP_080203682.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	18025	18621	.	-	.	ID=gene-C9E96_RS15640;Name=tehB;gbkey=Gene;gene=tehB;gene_biotype=protein_coding;locus_tag=C9E96_RS15640;old_locus_tag=C9E96_16025
NZ_PYJX01000166.1	Protein Homology	CDS	18025	18621	.	-	0	ID=cds-WP_080203681.1;Parent=gene-C9E96_RS15640;Dbxref=GenBank:WP_080203681.1;Name=WP_080203681.1;Ontology_term=GO:0046690,GO:0008757;gbkey=CDS;gene=tehB;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=response to tellurium ion|0046690||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460567.1;locus_tag=C9E96_RS15640;product=tellurite resistance methyltransferase TehB;protein_id=WP_080203681.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	18608	19621	.	-	.	ID=gene-C9E96_RS15645;Name=tehA;gbkey=Gene;gene=tehA;gene_biotype=protein_coding;locus_tag=C9E96_RS15645;old_locus_tag=C9E96_16030
NZ_PYJX01000166.1	Protein Homology	CDS	18608	19621	.	-	0	ID=cds-WP_001244002.1;Parent=gene-C9E96_RS15645;Dbxref=GenBank:WP_001244002.1;Name=WP_001244002.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=tehA;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460568.1;locus_tag=C9E96_RS15645;product=dicarboxylate transporter/tellurite-resistance protein TehA;protein_id=WP_001244002.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	19728	20708	.	+	.	ID=gene-C9E96_RS15650;Name=ydcK;gbkey=Gene;gene=ydcK;gene_biotype=protein_coding;locus_tag=C9E96_RS15650;old_locus_tag=C9E96_16035
NZ_PYJX01000166.1	Protein Homology	CDS	19728	20708	.	+	0	ID=cds-WP_080203680.1;Parent=gene-C9E96_RS15650;Dbxref=GenBank:WP_080203680.1;Name=WP_080203680.1;gbkey=CDS;gene=ydcK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460569.1;locus_tag=C9E96_RS15650;product=YdcK family protein;protein_id=WP_080203680.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	20705	21244	.	-	.	ID=gene-C9E96_RS15655;Name=rimL;gbkey=Gene;gene=rimL;gene_biotype=protein_coding;locus_tag=C9E96_RS15655;old_locus_tag=C9E96_16040
NZ_PYJX01000166.1	Protein Homology	CDS	20705	21244	.	-	0	ID=cds-WP_000229306.1;Parent=gene-C9E96_RS15655;Dbxref=GenBank:WP_000229306.1;Name=WP_000229306.1;gbkey=CDS;gene=rimL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460570.1;locus_tag=C9E96_RS15655;product=50S ribosomal protein L7/L12-serine acetyltransferase;protein_id=WP_000229306.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	21461	22579	.	+	.	ID=gene-C9E96_RS15660;Name=C9E96_RS15660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15660;old_locus_tag=C9E96_16045
NZ_PYJX01000166.1	Protein Homology	CDS	21461	22579	.	+	0	ID=cds-WP_080203679.1;Parent=gene-C9E96_RS15660;Dbxref=GenBank:WP_080203679.1;Name=WP_080203679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460571.1;locus_tag=C9E96_RS15660;product=M42 family metallopeptidase;protein_id=WP_080203679.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	22576	22857	.	+	.	ID=gene-C9E96_RS15665;Name=sgcB;gbkey=Gene;gene=sgcB;gene_biotype=protein_coding;locus_tag=C9E96_RS15665;old_locus_tag=C9E96_16050
NZ_PYJX01000166.1	Protein Homology	CDS	22576	22857	.	+	0	ID=cds-WP_000976132.1;Parent=gene-C9E96_RS15665;Dbxref=GenBank:WP_000976132.1;Name=WP_000976132.1;gbkey=CDS;gene=sgcB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460572.1;locus_tag=C9E96_RS15665;product=PTS sugar transporter subunit IIB SgcB;protein_id=WP_000976132.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	22868	24181	.	+	.	ID=gene-C9E96_RS15670;Name=sgcC;gbkey=Gene;gene=sgcC;gene_biotype=protein_coding;locus_tag=C9E96_RS15670;old_locus_tag=C9E96_16055
NZ_PYJX01000166.1	Protein Homology	CDS	22868	24181	.	+	0	ID=cds-WP_045717713.1;Parent=gene-C9E96_RS15670;Dbxref=GenBank:WP_045717713.1;Name=WP_045717713.1;gbkey=CDS;gene=sgcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460573.1;locus_tag=C9E96_RS15670;product=PTS sugar transporter subunit IIC SgcC;protein_id=WP_045717713.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	24195	25001	.	+	.	ID=gene-C9E96_RS15675;Name=sgcQ;gbkey=Gene;gene=sgcQ;gene_biotype=protein_coding;locus_tag=C9E96_RS15675;old_locus_tag=C9E96_16060
NZ_PYJX01000166.1	Protein Homology	CDS	24195	25001	.	+	0	ID=cds-WP_031605312.1;Parent=gene-C9E96_RS15675;Dbxref=GenBank:WP_031605312.1;Name=WP_031605312.1;gbkey=CDS;gene=sgcQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460574.1;locus_tag=C9E96_RS15675;product=BtpA family protein SgcQ;protein_id=WP_031605312.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	25133	25570	.	+	.	ID=gene-C9E96_RS15680;Name=sgcA;gbkey=Gene;gene=sgcA;gene_biotype=protein_coding;locus_tag=C9E96_RS15680;old_locus_tag=C9E96_16065
NZ_PYJX01000166.1	Protein Homology	CDS	25133	25570	.	+	0	ID=cds-WP_000606458.1;Parent=gene-C9E96_RS15680;Dbxref=GenBank:WP_000606458.1;Name=WP_000606458.1;gbkey=CDS;gene=sgcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460575.1;locus_tag=C9E96_RS15680;product=SgcA family PTS sugar transporter subunit IIA;protein_id=WP_000606458.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	25582	26214	.	+	.	ID=gene-C9E96_RS15685;Name=C9E96_RS15685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15685;old_locus_tag=C9E96_16070
NZ_PYJX01000166.1	Protein Homology	CDS	25582	26214	.	+	0	ID=cds-WP_023218172.1;Parent=gene-C9E96_RS15685;Dbxref=GenBank:WP_023218172.1;Name=WP_023218172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460576.1;locus_tag=C9E96_RS15685;product=ribulose-phosphate 3 epimerase family protein;protein_id=WP_023218172.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	26230	27021	.	+	.	ID=gene-C9E96_RS15690;Name=C9E96_RS15690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15690;old_locus_tag=C9E96_16075
NZ_PYJX01000166.1	Protein Homology	CDS	26230	27021	.	+	0	ID=cds-WP_001670738.1;Parent=gene-C9E96_RS15690;Dbxref=GenBank:WP_001670738.1;Name=WP_001670738.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460577.1;locus_tag=C9E96_RS15690;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_001670738.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	27021	27458	.	+	.	ID=gene-C9E96_RS15695;Name=aac(6');gbkey=Gene;gene=aac(6');gene_biotype=protein_coding;locus_tag=C9E96_RS15695;old_locus_tag=C9E96_16080
NZ_PYJX01000166.1	Protein Homology	CDS	27021	27458	.	+	0	ID=cds-WP_135494366.1;Parent=gene-C9E96_RS15695;Dbxref=GenBank:WP_135494366.1;Name=WP_135494366.1;gbkey=CDS;gene=aac(6');inference=COORDINATES: similar to AA sequence:RefSeq:NP_460578.1;locus_tag=C9E96_RS15695;product=cryptic aminoglycoside N-acetyltransferase AAC(6')-Iy/Iaa;protein_id=WP_135494366.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	27513	28715	.	-	.	ID=gene-C9E96_RS15700;Name=C9E96_RS15700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15700;old_locus_tag=C9E96_16085
NZ_PYJX01000166.1	Protein Homology	CDS	27513	28715	.	-	0	ID=cds-WP_080203678.1;Parent=gene-C9E96_RS15700;Dbxref=GenBank:WP_080203678.1;Name=WP_080203678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460579.1;locus_tag=C9E96_RS15700;product=lactate oxidase;protein_id=WP_080203678.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	28727	29302	.	-	.	ID=gene-C9E96_RS15705;Name=C9E96_RS15705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15705;old_locus_tag=C9E96_16090
NZ_PYJX01000166.1	Protein Homology	CDS	28727	29302	.	-	0	ID=cds-WP_079942433.1;Parent=gene-C9E96_RS15705;Dbxref=GenBank:WP_079942433.1;Name=WP_079942433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460580.1;locus_tag=C9E96_RS15705;product=YceI family protein;protein_id=WP_079942433.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	gene	29498	31153	.	-	.	ID=gene-C9E96_RS15710;Name=C9E96_RS15710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS15710;old_locus_tag=C9E96_16095
NZ_PYJX01000166.1	Protein Homology	CDS	29498	31153	.	-	0	ID=cds-WP_053445245.1;Parent=gene-C9E96_RS15710;Dbxref=GenBank:WP_053445245.1;Name=WP_053445245.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460581.1;locus_tag=C9E96_RS15710;product=glucan biosynthesis protein D;protein_id=WP_053445245.1;transl_table=11
NZ_PYJX01000166.1	RefSeq	pseudogene	31373	32110	.	-	.	ID=gene-C9E96_RS15715;Name=C9E96_RS15715;end_range=32110,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS15715;old_locus_tag=C9E96_16100;partial=true;pseudo=true
NZ_PYJX01000166.1	Protein Homology	CDS	31373	32110	.	-	0	ID=cds-C9E96_RS15715;Parent=gene-C9E96_RS15715;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=32110,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460582.1;locus_tag=C9E96_RS15715;partial=true;product=carboxylesterase family protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000109.1 1 32096
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000109.1	RefSeq	region	1	32096	.	+	.	ID=NZ_PYJX01000109.1:1..32096;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000109.1	RefSeq	pseudogene	42	215	.	-	.	ID=gene-C9E96_RS09150;Name=C9E96_RS09150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS09150;old_locus_tag=C9E96_09335;partial=true;pseudo=true;start_range=.,42
NZ_PYJX01000109.1	Protein Homology	CDS	42	215	.	-	0	ID=cds-C9E96_RS09150;Parent=gene-C9E96_RS09150;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459909.1;locus_tag=C9E96_RS09150;partial=true;product=NAD-dependent epimerase/dehydratase family protein;pseudo=true;start_range=.,42;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	311	1744	.	-	.	ID=gene-C9E96_RS09155;Name=C9E96_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09155;old_locus_tag=C9E96_09340
NZ_PYJX01000109.1	Protein Homology	CDS	311	1744	.	-	0	ID=cds-WP_023993621.1;Parent=gene-C9E96_RS09155;Dbxref=GenBank:WP_023993621.1;Name=WP_023993621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459910.1;locus_tag=C9E96_RS09155;product=SDR family oxidoreductase;protein_id=WP_023993621.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	1755	2756	.	-	.	ID=gene-C9E96_RS09160;Name=ltaE;gbkey=Gene;gene=ltaE;gene_biotype=protein_coding;locus_tag=C9E96_RS09160;old_locus_tag=C9E96_09345
NZ_PYJX01000109.1	Protein Homology	CDS	1755	2756	.	-	0	ID=cds-WP_023193865.1;Parent=gene-C9E96_RS09160;Dbxref=GenBank:WP_023193865.1;Name=WP_023193865.1;Ontology_term=GO:0006520,GO:0016829;gbkey=CDS;gene=ltaE;go_function=lyase activity|0016829||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459911.1;locus_tag=C9E96_RS09160;product=low-specificity L-threonine aldolase;protein_id=WP_023193865.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	2795	4513	.	-	.	ID=gene-C9E96_RS09165;Name=poxB;gbkey=Gene;gene=poxB;gene_biotype=protein_coding;locus_tag=C9E96_RS09165;old_locus_tag=C9E96_09350
NZ_PYJX01000109.1	Protein Homology	CDS	2795	4513	.	-	0	ID=cds-WP_135494122.1;Parent=gene-C9E96_RS09165;Dbxref=GenBank:WP_135494122.1;Name=WP_135494122.1;Ontology_term=GO:0006090,GO:0000287,GO:0030976,GO:0052737;gbkey=CDS;gene=poxB;go_function=magnesium ion binding|0000287||IEA,thiamine pyrophosphate binding|0030976||IEA,pyruvate dehydrogenase (quinone) activity|0052737||IEA;go_process=pyruvate metabolic process|0006090||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459912.1;locus_tag=C9E96_RS09165;product=ubiquinone-dependent pyruvate dehydrogenase;protein_id=WP_135494122.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	4671	5639	.	-	.	ID=gene-C9E96_RS09170;Name=hcr;gbkey=Gene;gene=hcr;gene_biotype=protein_coding;locus_tag=C9E96_RS09170;old_locus_tag=C9E96_09355
NZ_PYJX01000109.1	Protein Homology	CDS	4671	5639	.	-	0	ID=cds-WP_001538209.1;Parent=gene-C9E96_RS09170;Dbxref=GenBank:WP_001538209.1;Name=WP_001538209.1;Ontology_term=GO:0016491,GO:0051536;gbkey=CDS;gene=hcr;go_function=oxidoreductase activity|0016491||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308985.1;locus_tag=C9E96_RS09170;product=NADH oxidoreductase;protein_id=WP_001538209.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	5651	7303	.	-	.	ID=gene-C9E96_RS09175;Name=hcp;gbkey=Gene;gene=hcp;gene_biotype=protein_coding;gene_synonym=priS;locus_tag=C9E96_RS09175;old_locus_tag=C9E96_09360
NZ_PYJX01000109.1	Protein Homology	CDS	5651	7303	.	-	0	ID=cds-WP_135494124.1;Parent=gene-C9E96_RS09175;Dbxref=GenBank:WP_135494124.1;Name=WP_135494124.1;Ontology_term=GO:0016661,GO:0051536;gbkey=CDS;gene=hcp;go_function=oxidoreductase activity%2C acting on other nitrogenous compounds as donors|0016661||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122080.1;locus_tag=C9E96_RS09175;product=hydroxylamine reductase;protein_id=WP_135494124.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	7447	8346	.	-	.	ID=gene-C9E96_RS09180;Name=C9E96_RS09180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09180;old_locus_tag=C9E96_09365
NZ_PYJX01000109.1	Protein Homology	CDS	7447	8346	.	-	0	ID=cds-WP_000491118.1;Parent=gene-C9E96_RS09180;Dbxref=GenBank:WP_000491118.1;Name=WP_000491118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459915.1;locus_tag=C9E96_RS09180;product=lysine exporter LysO family protein;protein_id=WP_000491118.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	8548	10206	.	+	.	ID=gene-C9E96_RS09185;Name=C9E96_RS09185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09185;old_locus_tag=C9E96_09375
NZ_PYJX01000109.1	Protein Homology	CDS	8548	10206	.	+	0	ID=cds-WP_135494126.1;Parent=gene-C9E96_RS09185;Dbxref=GenBank:WP_135494126.1;Name=WP_135494126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459916.2;locus_tag=C9E96_RS09185;product=ATP-dependent endonuclease;protein_id=WP_135494126.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	10203	11153	.	-	.	ID=gene-C9E96_RS09190;Name=C9E96_RS09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09190;old_locus_tag=C9E96_09380
NZ_PYJX01000109.1	Protein Homology	CDS	10203	11153	.	-	0	ID=cds-WP_001617140.1;Parent=gene-C9E96_RS09190;Dbxref=GenBank:WP_001617140.1;Name=WP_001617140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519667.1;locus_tag=C9E96_RS09190;product=VirK/YbjX family protein;protein_id=WP_001617140.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	11299	12417	.	+	.	ID=gene-C9E96_RS09195;Name=macA;gbkey=Gene;gene=macA;gene_biotype=protein_coding;locus_tag=C9E96_RS09195;old_locus_tag=C9E96_09385
NZ_PYJX01000109.1	Protein Homology	CDS	11299	12417	.	+	0	ID=cds-WP_023212628.1;Parent=gene-C9E96_RS09195;Dbxref=GenBank:WP_023212628.1;Name=WP_023212628.1;Ontology_term=GO:1990961,GO:0022857,GO:0019898,GO:1990195;gbkey=CDS;gene=macA;go_component=extrinsic component of membrane|0019898||IEA,macrolide transmembrane transporter complex|1990195||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459918.1;locus_tag=C9E96_RS09195;product=macrolide transporter subunit MacA;protein_id=WP_023212628.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	12414	14360	.	+	.	ID=gene-C9E96_RS09200;Name=macB;gbkey=Gene;gene=macB;gene_biotype=protein_coding;locus_tag=C9E96_RS09200;old_locus_tag=C9E96_09390
NZ_PYJX01000109.1	Protein Homology	CDS	12414	14360	.	+	0	ID=cds-WP_000125894.1;Parent=gene-C9E96_RS09200;Dbxref=GenBank:WP_000125894.1;Name=WP_000125894.1;Ontology_term=GO:0005524,GO:0022857,GO:1990195;gbkey=CDS;gene=macB;go_component=macrolide transmembrane transporter complex|1990195||IEA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459919.1;locus_tag=C9E96_RS09200;product=macrolide ABC transporter ATP-binding protein/permease MacB;protein_id=WP_000125894.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	14490	14711	.	-	.	ID=gene-C9E96_RS09205;Name=cspD;gbkey=Gene;gene=cspD;gene_biotype=protein_coding;locus_tag=C9E96_RS09205;old_locus_tag=C9E96_09400
NZ_PYJX01000109.1	Protein Homology	CDS	14490	14711	.	-	0	ID=cds-WP_000447499.1;Parent=gene-C9E96_RS09205;Dbxref=GenBank:WP_000447499.1;Name=WP_000447499.1;gbkey=CDS;gene=cspD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459920.1;locus_tag=C9E96_RS09205;product=cold shock-like protein CspD;protein_id=WP_000447499.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	15035	15355	.	+	.	ID=gene-C9E96_RS09210;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=C9E96_RS09210;old_locus_tag=C9E96_09405
NZ_PYJX01000109.1	Protein Homology	CDS	15035	15355	.	+	0	ID=cds-WP_000520789.1;Parent=gene-C9E96_RS09210;Dbxref=GenBank:WP_000520789.1;Name=WP_000520789.1;Ontology_term=GO:0006508;gbkey=CDS;gene=clpS;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128368.1;locus_tag=C9E96_RS09210;product=ATP-dependent Clp protease adapter ClpS;protein_id=WP_000520789.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	15386	17662	.	+	.	ID=gene-C9E96_RS09215;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=C9E96_RS09215;old_locus_tag=C9E96_09410
NZ_PYJX01000109.1	Protein Homology	CDS	15386	17662	.	+	0	ID=cds-WP_135494128.1;Parent=gene-C9E96_RS09215;Dbxref=GenBank:WP_135494128.1;Name=WP_135494128.1;Ontology_term=GO:0043335,GO:0005524,GO:0016887;gbkey=CDS;gene=clpA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein unfolding|0043335||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459922.1;locus_tag=C9E96_RS09215;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_135494128.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	17693	18073	.	-	.	ID=gene-C9E96_RS23945;Name=C9E96_RS23945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23945
NZ_PYJX01000109.1	GeneMarkS-2+	CDS	17693	18073	.	-	0	ID=cds-WP_167850620.1;Parent=gene-C9E96_RS23945;Dbxref=GenBank:WP_167850620.1;Name=WP_167850620.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS23945;product=hypothetical protein;protein_id=WP_167850620.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	18158	18634	.	-	.	ID=gene-C9E96_RS09225;Name=C9E96_RS09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09225;old_locus_tag=C9E96_09420
NZ_PYJX01000109.1	Protein Homology	CDS	18158	18634	.	-	0	ID=cds-WP_001747668.1;Parent=gene-C9E96_RS09225;Dbxref=GenBank:WP_001747668.1;Name=WP_001747668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747668.1;locus_tag=C9E96_RS09225;product=hypothetical protein;protein_id=WP_001747668.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	18654	18848	.	-	.	ID=gene-C9E96_RS24035;Name=C9E96_RS24035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24035
NZ_PYJX01000109.1	GeneMarkS-2+	CDS	18654	18848	.	-	0	ID=cds-WP_071990498.1;Parent=gene-C9E96_RS24035;Dbxref=GenBank:WP_071990498.1;Name=WP_071990498.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS24035;product=hypothetical protein;protein_id=WP_071990498.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	pseudogene	18831	19714	.	-	.	ID=gene-C9E96_RS09230;Name=C9E96_RS09230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS09230;old_locus_tag=C9E96_09425;partial=true;pseudo=true;start_range=.,18831
NZ_PYJX01000109.1	Protein Homology	CDS	18831	19714	.	-	0	ID=cds-C9E96_RS09230;Parent=gene-C9E96_RS09230;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=C9E96_RS09230;partial=true;product=IS256 family transposase;pseudo=true;start_range=.,18831;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	19910	20107	.	-	.	ID=gene-C9E96_RS09235;Name=C9E96_RS09235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09235;old_locus_tag=C9E96_09430
NZ_PYJX01000109.1	Protein Homology	CDS	19910	20107	.	-	0	ID=cds-WP_001117984.1;Parent=gene-C9E96_RS09235;Dbxref=GenBank:WP_001117984.1;Name=WP_001117984.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004111984.1;locus_tag=C9E96_RS09235;product=hypothetical protein;protein_id=WP_001117984.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	pseudogene	20269	20622	.	-	.	ID=gene-C9E96_RS24215;Name=C9E96_RS24215;end_range=20622,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24215;old_locus_tag=C9E96_09435;partial=true;pseudo=true
NZ_PYJX01000109.1	Protein Homology	CDS	20269	20622	.	-	0	ID=cds-C9E96_RS24215;Parent=gene-C9E96_RS24215;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;end_range=20622,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524896.1;locus_tag=C9E96_RS24215;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	21077	21164	.	-	.	ID=gene-C9E96_RS09245;Name=C9E96_RS09245;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS09245;old_locus_tag=C9E96_09445
NZ_PYJX01000109.1	tRNAscan-SE	tRNA	21077	21164	.	-	.	ID=rna-C9E96_RS09245;Parent=gene-C9E96_RS09245;anticodon=(pos:complement(21128..21130));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09245;product=tRNA-Ser
NZ_PYJX01000109.1	tRNAscan-SE	exon	21077	21164	.	-	.	ID=exon-C9E96_RS09245-1;Parent=rna-C9E96_RS09245;anticodon=(pos:complement(21128..21130));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09245;product=tRNA-Ser
NZ_PYJX01000109.1	RefSeq	gene	21313	21990	.	-	.	ID=gene-C9E96_RS09250;Name=C9E96_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09250;old_locus_tag=C9E96_09450
NZ_PYJX01000109.1	Protein Homology	CDS	21313	21990	.	-	0	ID=cds-WP_000097893.1;Parent=gene-C9E96_RS09250;Dbxref=GenBank:WP_000097893.1;Name=WP_000097893.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459926.1;locus_tag=C9E96_RS09250;product=hydrolase;protein_id=WP_000097893.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	22010	22870	.	-	.	ID=gene-C9E96_RS09255;Name=C9E96_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09255;old_locus_tag=C9E96_09455
NZ_PYJX01000109.1	Protein Homology	CDS	22010	22870	.	-	0	ID=cds-WP_000809969.1;Parent=gene-C9E96_RS09255;Dbxref=GenBank:WP_000809969.1;Name=WP_000809969.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459927.1;locus_tag=C9E96_RS09255;product=pirin family protein;protein_id=WP_000809969.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	22979	23890	.	+	.	ID=gene-C9E96_RS09260;Name=C9E96_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09260;old_locus_tag=C9E96_09460
NZ_PYJX01000109.1	Protein Homology	CDS	22979	23890	.	+	0	ID=cds-WP_000597928.1;Parent=gene-C9E96_RS09260;Dbxref=GenBank:WP_000597928.1;Name=WP_000597928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459928.1;locus_tag=C9E96_RS09260;product=LysR family transcriptional regulator;protein_id=WP_000597928.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	23981	24199	.	-	.	ID=gene-C9E96_RS09265;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=C9E96_RS09265;old_locus_tag=C9E96_09465
NZ_PYJX01000109.1	Protein Homology	CDS	23981	24199	.	-	0	ID=cds-WP_001040187.1;Parent=gene-C9E96_RS09265;Dbxref=GenBank:WP_001040187.1;Name=WP_001040187.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001040186.1;locus_tag=C9E96_RS09265;product=translation initiation factor IF-1;protein_id=WP_001040187.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	24511	25215	.	-	.	ID=gene-C9E96_RS09275;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=C9E96_RS09275;old_locus_tag=C9E96_09475
NZ_PYJX01000109.1	Protein Homology	CDS	24511	25215	.	-	0	ID=cds-WP_061382937.1;Parent=gene-C9E96_RS09275;Dbxref=GenBank:WP_061382937.1;Name=WP_061382937.1;Ontology_term=GO:0006508,GO:0008914;gbkey=CDS;gene=aat;go_function=leucyl-tRNA--protein transferase activity|0008914||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459931.1;locus_tag=C9E96_RS09275;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_061382937.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	25260	26981	.	-	.	ID=gene-C9E96_RS09280;Name=cydC;gbkey=Gene;gene=cydC;gene_biotype=protein_coding;locus_tag=C9E96_RS09280;old_locus_tag=C9E96_09480
NZ_PYJX01000109.1	Protein Homology	CDS	25260	26981	.	-	0	ID=cds-WP_135494130.1;Parent=gene-C9E96_RS09280;Dbxref=GenBank:WP_135494130.1;Name=WP_135494130.1;Ontology_term=GO:0045454,GO:0005524,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;gene=cydC;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459932.1;locus_tag=C9E96_RS09280;product=heme ABC transporter ATP-binding protein/permease CydC;protein_id=WP_135494130.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	26982	28748	.	-	.	ID=gene-C9E96_RS09285;Name=cydD;gbkey=Gene;gene=cydD;gene_biotype=protein_coding;locus_tag=C9E96_RS09285;old_locus_tag=C9E96_09485
NZ_PYJX01000109.1	Protein Homology	CDS	26982	28748	.	-	0	ID=cds-WP_135494132.1;Parent=gene-C9E96_RS09285;Dbxref=GenBank:WP_135494132.1;Name=WP_135494132.1;Ontology_term=GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;gene=cydD;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459933.1;locus_tag=C9E96_RS09285;product=heme ABC transporter permease/ATP-binding protein CydD;protein_id=WP_135494132.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	28862	29830	.	-	.	ID=gene-C9E96_RS09290;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=C9E96_RS09290;old_locus_tag=C9E96_09490
NZ_PYJX01000109.1	Protein Homology	CDS	28862	29830	.	-	0	ID=cds-WP_000537406.1;Parent=gene-C9E96_RS09290;Dbxref=GenBank:WP_000537406.1;Name=WP_000537406.1;Ontology_term=GO:0019430,GO:0004791;gbkey=CDS;gene=trxB;go_function=thioredoxin-disulfide reductase (NADPH) activity|0004791||IEA;go_process=removal of superoxide radicals|0019430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459934.1;locus_tag=C9E96_RS09290;product=thioredoxin-disulfide reductase;protein_id=WP_000537406.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	gene	30377	30871	.	+	.	ID=gene-C9E96_RS09295;Name=lrp;gbkey=Gene;gene=lrp;gene_biotype=protein_coding;locus_tag=C9E96_RS09295;old_locus_tag=C9E96_09500
NZ_PYJX01000109.1	Protein Homology	CDS	30377	30871	.	+	0	ID=cds-WP_000228469.1;Parent=gene-C9E96_RS09295;Dbxref=GenBank:WP_000228469.1;Name=WP_000228469.1;gbkey=CDS;gene=lrp;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001591745.1;locus_tag=C9E96_RS09295;product=leucine-responsive transcriptional regulator Lrp;protein_id=WP_000228469.1;transl_table=11
NZ_PYJX01000109.1	RefSeq	pseudogene	31006	32096	.	+	.	ID=gene-C9E96_RS09300;Name=ftsK;end_range=32096,.;gbkey=Gene;gene=ftsK;gene_biotype=pseudogene;locus_tag=C9E96_RS09300;old_locus_tag=C9E96_09505;partial=true;pseudo=true
NZ_PYJX01000109.1	Protein Homology	CDS	31006	32096	.	+	0	ID=cds-C9E96_RS09300;Parent=gene-C9E96_RS09300;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=32096,.;gbkey=CDS;gene=ftsK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459936.1;locus_tag=C9E96_RS09300;partial=true;product=DNA translocase FtsK;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000247.1 1 31867
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000247.1	RefSeq	region	1	31867	.	+	.	ID=NZ_PYJX01000247.1:1..31867;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000247.1	RefSeq	pseudogene	32	640	.	+	.	ID=gene-C9E96_RS23355;Name=C9E96_RS23355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23355;old_locus_tag=C9E96_23940;partial=true;pseudo=true;start_range=.,32
NZ_PYJX01000247.1	Protein Homology	CDS	32	640	.	+	0	ID=cds-C9E96_RS23355;Parent=gene-C9E96_RS23355;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459460.1;locus_tag=C9E96_RS23355;partial=true;product=acyl-CoA thioesterase II;pseudo=true;start_range=.,32;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	740	2026	.	-	.	ID=gene-C9E96_RS23360;Name=amtB;gbkey=Gene;gene=amtB;gene_biotype=protein_coding;locus_tag=C9E96_RS23360;old_locus_tag=C9E96_23945
NZ_PYJX01000247.1	Protein Homology	CDS	740	2026	.	-	0	ID=cds-WP_000684912.1;Parent=gene-C9E96_RS23360;Dbxref=GenBank:WP_000684912.1;Name=WP_000684912.1;Ontology_term=GO:0072488,GO:0008519,GO:0005886;gbkey=CDS;gene=amtB;go_component=plasma membrane|0005886||IEA;go_function=ammonium channel activity|0008519||IEA;go_process=ammonium transmembrane transport|0072488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459459.1;locus_tag=C9E96_RS23360;product=ammonium transporter AmtB;protein_id=WP_000684912.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	2058	2396	.	-	.	ID=gene-C9E96_RS23365;Name=glnK;gbkey=Gene;gene=glnK;gene_biotype=protein_coding;locus_tag=C9E96_RS23365;old_locus_tag=C9E96_23950
NZ_PYJX01000247.1	Protein Homology	CDS	2058	2396	.	-	0	ID=cds-WP_000780341.1;Parent=gene-C9E96_RS23365;Dbxref=GenBank:WP_000780341.1;Name=WP_000780341.1;Ontology_term=GO:0006808,GO:0030234;gbkey=CDS;gene=glnK;go_function=enzyme regulator activity|0030234||IEA;go_process=regulation of nitrogen utilization|0006808||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459458.1;locus_tag=C9E96_RS23365;product=P-II family nitrogen regulator;protein_id=WP_000780341.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	2609	4390	.	-	.	ID=gene-C9E96_RS23370;Name=C9E96_RS23370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23370;old_locus_tag=C9E96_23955
NZ_PYJX01000247.1	Protein Homology	CDS	2609	4390	.	-	0	ID=cds-WP_001256076.1;Parent=gene-C9E96_RS23370;Dbxref=GenBank:WP_001256076.1;Name=WP_001256076.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459457.1;locus_tag=C9E96_RS23370;product=SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;protein_id=WP_001256076.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	4383	6155	.	-	.	ID=gene-C9E96_RS23375;Name=C9E96_RS23375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23375;old_locus_tag=C9E96_23960
NZ_PYJX01000247.1	Protein Homology	CDS	4383	6155	.	-	0	ID=cds-WP_001235559.1;Parent=gene-C9E96_RS23375;Dbxref=GenBank:WP_001235559.1;Name=WP_001235559.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459456.1;locus_tag=C9E96_RS23375;product=SmdA family multidrug ABC transporter permease/ATP-binding protein;protein_id=WP_001235559.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	6196	6654	.	-	.	ID=gene-C9E96_RS23380;Name=decR;gbkey=Gene;gene=decR;gene_biotype=protein_coding;locus_tag=C9E96_RS23380;old_locus_tag=C9E96_23965
NZ_PYJX01000247.1	Protein Homology	CDS	6196	6654	.	-	0	ID=cds-WP_000884593.1;Parent=gene-C9E96_RS23380;Dbxref=GenBank:WP_000884593.1;Name=WP_000884593.1;gbkey=CDS;gene=decR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459455.1;locus_tag=C9E96_RS23380;product=DNA-binding transcriptional regulator DecR;protein_id=WP_000884593.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	6767	7822	.	+	.	ID=gene-C9E96_RS23385;Name=cdsH;gbkey=Gene;gene=cdsH;gene_biotype=protein_coding;locus_tag=C9E96_RS23385;old_locus_tag=C9E96_23970
NZ_PYJX01000247.1	Protein Homology	CDS	6767	7822	.	+	0	ID=cds-WP_072103664.1;Parent=gene-C9E96_RS23385;Dbxref=GenBank:WP_072103664.1;Name=WP_072103664.1;gbkey=CDS;gene=cdsH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459454.1;locus_tag=C9E96_RS23385;product=cysteine desulfhydrase;protein_id=WP_072103664.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	7872	8690	.	-	.	ID=gene-C9E96_RS23390;Name=cof;gbkey=Gene;gene=cof;gene_biotype=protein_coding;locus_tag=C9E96_RS23390;old_locus_tag=C9E96_23975
NZ_PYJX01000247.1	Protein Homology	CDS	7872	8690	.	-	0	ID=cds-WP_000113030.1;Parent=gene-C9E96_RS23390;Dbxref=GenBank:WP_000113030.1;Name=WP_000113030.1;Ontology_term=GO:0016818;gbkey=CDS;gene=cof;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459453.1;locus_tag=C9E96_RS23390;product=HMP-PP phosphatase;protein_id=WP_000113030.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	8791	10491	.	+	.	ID=gene-C9E96_RS23395;Name=C9E96_RS23395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23395;old_locus_tag=C9E96_23980
NZ_PYJX01000247.1	Protein Homology	CDS	8791	10491	.	+	0	ID=cds-WP_001238163.1;Parent=gene-C9E96_RS23395;Dbxref=GenBank:WP_001238163.1;Name=WP_001238163.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459452.1;locus_tag=C9E96_RS23395;product=SgrR family transcriptional regulator;protein_id=WP_001238163.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	10556	11251	.	+	.	ID=gene-C9E96_RS23400;Name=queC;gbkey=Gene;gene=queC;gene_biotype=protein_coding;locus_tag=C9E96_RS23400;old_locus_tag=C9E96_23985
NZ_PYJX01000247.1	Protein Homology	CDS	10556	11251	.	+	0	ID=cds-WP_000817201.1;Parent=gene-C9E96_RS23400;Dbxref=GenBank:WP_000817201.1;Name=WP_000817201.1;gbkey=CDS;gene=queC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459451.1;locus_tag=C9E96_RS23400;product=7-cyano-7-deazaguanine synthase QueC;protein_id=WP_000817201.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	11357	11755	.	-	.	ID=gene-C9E96_RS23405;Name=fadM;gbkey=Gene;gene=fadM;gene_biotype=protein_coding;locus_tag=C9E96_RS23405;old_locus_tag=C9E96_23990
NZ_PYJX01000247.1	Protein Homology	CDS	11357	11755	.	-	0	ID=cds-WP_001194543.1;Parent=gene-C9E96_RS23405;Dbxref=GenBank:WP_001194543.1;Name=WP_001194543.1;gbkey=CDS;gene=fadM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459450.1;locus_tag=C9E96_RS23405;product=long-chain acyl-CoA thioesterase FadM;protein_id=WP_001194543.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	11859	12233	.	-	.	ID=gene-C9E96_RS23410;Name=C9E96_RS23410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23410;old_locus_tag=C9E96_23995
NZ_PYJX01000247.1	Protein Homology	CDS	11859	12233	.	-	0	ID=cds-WP_000680322.1;Parent=gene-C9E96_RS23410;Dbxref=GenBank:WP_000680322.1;Name=WP_000680322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459449.1;locus_tag=C9E96_RS23410;product=helix-hairpin-helix domain-containing protein;protein_id=WP_000680322.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	12383	14254	.	-	.	ID=gene-C9E96_RS23415;Name=ppiD;gbkey=Gene;gene=ppiD;gene_biotype=protein_coding;locus_tag=C9E96_RS23415;old_locus_tag=C9E96_24000
NZ_PYJX01000247.1	Protein Homology	CDS	12383	14254	.	-	0	ID=cds-WP_080204022.1;Parent=gene-C9E96_RS23415;Dbxref=GenBank:WP_080204022.1;Name=WP_080204022.1;Ontology_term=GO:0003755;gbkey=CDS;gene=ppiD;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459448.1;locus_tag=C9E96_RS23415;product=peptidylprolyl isomerase;protein_id=WP_080204022.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	14545	14835	.	-	.	ID=gene-C9E96_RS23420;Name=hupB;gbkey=Gene;gene=hupB;gene_biotype=protein_coding;locus_tag=C9E96_RS23420;old_locus_tag=C9E96_24005
NZ_PYJX01000247.1	Protein Homology	CDS	14545	14835	.	-	0	ID=cds-WP_254888479.1;Parent=gene-C9E96_RS23420;Dbxref=GenBank:WP_254888479.1;Name=WP_254888479.1;gbkey=CDS;gene=hupB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013356995.1;locus_tag=C9E96_RS23420;product=nucleoid-associated protein HU-beta;protein_id=WP_254888479.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	15026	17380	.	-	.	ID=gene-C9E96_RS23425;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=C9E96_RS23425;old_locus_tag=C9E96_24010
NZ_PYJX01000247.1	Protein Homology	CDS	15026	17380	.	-	0	ID=cds-WP_001067723.1;Parent=gene-C9E96_RS23425;Dbxref=GenBank:WP_001067723.1;Name=WP_001067723.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0016887,GO:0043565;gbkey=CDS;gene=lon;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA,ATP hydrolysis activity|0016887||IEA,sequence-specific DNA binding|0043565||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001469947.1;locus_tag=C9E96_RS23425;product=endopeptidase La;protein_id=WP_001067723.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	17566	18837	.	-	.	ID=gene-C9E96_RS23430;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=C9E96_RS23430;old_locus_tag=C9E96_24015
NZ_PYJX01000247.1	Protein Homology	CDS	17566	18837	.	-	0	ID=cds-WP_000130314.1;Parent=gene-C9E96_RS23430;Dbxref=GenBank:WP_000130314.1;Name=WP_000130314.1;Ontology_term=GO:0005524,GO:0051082,GO:0140662,GO:0009368;gbkey=CDS;gene=clpX;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP binding|0005524||IEA,unfolded protein binding|0051082||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001396736.1;locus_tag=C9E96_RS23430;product=ATP-dependent protease ATP-binding subunit ClpX;protein_id=WP_000130314.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	19089	19712	.	-	.	ID=gene-C9E96_RS23435;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=C9E96_RS23435;old_locus_tag=C9E96_24020
NZ_PYJX01000247.1	Protein Homology	CDS	19089	19712	.	-	0	ID=cds-WP_000122257.1;Parent=gene-C9E96_RS23435;Dbxref=GenBank:WP_000122257.1;Name=WP_000122257.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0009368;gbkey=CDS;gene=clpP;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006809880.1;locus_tag=C9E96_RS23435;product=ATP-dependent Clp endopeptidase proteolytic subunit ClpP;protein_id=WP_000122257.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	19959	21257	.	-	.	ID=gene-C9E96_RS23440;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=C9E96_RS23440;old_locus_tag=C9E96_24025
NZ_PYJX01000247.1	Protein Homology	CDS	19959	21257	.	-	0	ID=cds-WP_001198403.1;Parent=gene-C9E96_RS23440;Dbxref=GenBank:WP_001198403.1;Name=WP_001198403.1;Ontology_term=GO:0015031,GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process=protein transport|0015031||IEA,'de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001716227.1;locus_tag=C9E96_RS23440;product=trigger factor;protein_id=WP_001198403.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	21604	21921	.	-	.	ID=gene-C9E96_RS23450;Name=bolA;gbkey=Gene;gene=bolA;gene_biotype=protein_coding;locus_tag=C9E96_RS23450;old_locus_tag=C9E96_24035
NZ_PYJX01000247.1	Protein Homology	CDS	21604	21921	.	-	0	ID=cds-WP_000973433.1;Parent=gene-C9E96_RS23450;Dbxref=GenBank:WP_000973433.1;Name=WP_000973433.1;gbkey=CDS;gene=bolA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459442.1;locus_tag=C9E96_RS23450;product=transcriptional regulator BolA;protein_id=WP_000973433.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	22225	22803	.	+	.	ID=gene-C9E96_RS23455;Name=C9E96_RS23455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23455;old_locus_tag=C9E96_24045
NZ_PYJX01000247.1	Protein Homology	CDS	22225	22803	.	+	0	ID=cds-WP_001537832.1;Parent=gene-C9E96_RS23455;Dbxref=GenBank:WP_001537832.1;Name=WP_001537832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225436.1;locus_tag=C9E96_RS23455;product=lipoprotein;protein_id=WP_001537832.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	pseudogene	22847	24322	.	+	.	ID=gene-C9E96_RS23460;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=pseudogene;locus_tag=C9E96_RS23460;old_locus_tag=C9E96_24050;pseudo=true
NZ_PYJX01000247.1	Protein Homology	CDS	22847	24322	.	+	0	ID=cds-C9E96_RS23460;Parent=gene-C9E96_RS23460;Note=internal stop;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ampG;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459440.1;locus_tag=C9E96_RS23460;product=muropeptide MFS transporter AmpG;pseudo=true;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	24775	25731	.	+	.	ID=gene-C9E96_RS23465;Name=cyoA;gbkey=Gene;gene=cyoA;gene_biotype=protein_coding;locus_tag=C9E96_RS23465;old_locus_tag=C9E96_24055
NZ_PYJX01000247.1	Protein Homology	CDS	24775	25731	.	+	0	ID=cds-WP_001239448.1;Parent=gene-C9E96_RS23465;Dbxref=GenBank:WP_001239448.1;Name=WP_001239448.1;Ontology_term=GO:0022900,GO:0004129;gbkey=CDS;gene=cyoA;go_function=cytochrome-c oxidase activity|0004129||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459439.1;locus_tag=C9E96_RS23465;product=cytochrome o ubiquinol oxidase subunit II;protein_id=WP_001239448.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	25742	27733	.	+	.	ID=gene-C9E96_RS23470;Name=cyoB;gbkey=Gene;gene=cyoB;gene_biotype=protein_coding;locus_tag=C9E96_RS23470;old_locus_tag=C9E96_24060
NZ_PYJX01000247.1	Protein Homology	CDS	25742	27733	.	+	0	ID=cds-WP_000467158.1;Parent=gene-C9E96_RS23470;Dbxref=GenBank:WP_000467158.1;Name=WP_000467158.1;Ontology_term=GO:0004129;gbkey=CDS;gene=cyoB;go_function=cytochrome-c oxidase activity|0004129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002444673.1;locus_tag=C9E96_RS23470;product=cytochrome o ubiquinol oxidase subunit I;protein_id=WP_000467158.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	27723	28337	.	+	.	ID=gene-C9E96_RS23475;Name=C9E96_RS23475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23475;old_locus_tag=C9E96_24065
NZ_PYJX01000247.1	Protein Homology	CDS	27723	28337	.	+	0	ID=cds-WP_000179833.1;Parent=gene-C9E96_RS23475;Dbxref=GenBank:WP_000179833.1;Name=WP_000179833.1;Ontology_term=GO:0022904,GO:0004129;gbkey=CDS;go_function=cytochrome-c oxidase activity|0004129||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459437.1;locus_tag=C9E96_RS23475;product=cytochrome o ubiquinol oxidase subunit III;protein_id=WP_000179833.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	28337	28666	.	+	.	ID=gene-C9E96_RS23480;Name=C9E96_RS23480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23480;old_locus_tag=C9E96_24070
NZ_PYJX01000247.1	Protein Homology	CDS	28337	28666	.	+	0	ID=cds-WP_000019878.1;Parent=gene-C9E96_RS23480;Dbxref=GenBank:WP_000019878.1;Name=WP_000019878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459436.1;locus_tag=C9E96_RS23480;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=WP_000019878.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	28678	29568	.	+	.	ID=gene-C9E96_RS23485;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=C9E96_RS23485;old_locus_tag=C9E96_24075
NZ_PYJX01000247.1	Protein Homology	CDS	28678	29568	.	+	0	ID=cds-WP_000971352.1;Parent=gene-C9E96_RS23485;Dbxref=GenBank:WP_000971352.1;Name=WP_000971352.1;Ontology_term=GO:0048034,GO:0008495,GO:0016020;gbkey=CDS;gene=cyoE;go_component=membrane|0016020||IEA;go_function=protoheme IX farnesyltransferase activity|0008495||IEA;go_process=heme O biosynthetic process|0048034||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459435.1;locus_tag=C9E96_RS23485;product=heme o synthase;protein_id=WP_000971352.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	29616	31085	.	-	.	ID=gene-C9E96_RS23490;Name=C9E96_RS23490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23490;old_locus_tag=C9E96_24080
NZ_PYJX01000247.1	Protein Homology	CDS	29616	31085	.	-	0	ID=cds-WP_080204021.1;Parent=gene-C9E96_RS23490;Dbxref=GenBank:WP_080204021.1;Name=WP_080204021.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524005.1;locus_tag=C9E96_RS23490;product=SEL1-like repeat protein;protein_id=WP_080204021.1;transl_table=11
NZ_PYJX01000247.1	RefSeq	gene	31097	31867	.	-	.	ID=gene-C9E96_RS23495;Name=C9E96_RS23495;end_range=31867,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23495;old_locus_tag=C9E96_24085;partial=true
NZ_PYJX01000247.1	Protein Homology	CDS	31097	31867	.	-	0	ID=cds-WP_135494762.1;Parent=gene-C9E96_RS23495;Dbxref=GenBank:WP_135494762.1;Name=WP_135494762.1;Ontology_term=GO:0005515;end_range=31867,.;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459433.1;locus_tag=C9E96_RS23495;partial=true;product=tetratricopeptide repeat protein;protein_id=WP_135494762.1;transl_table=11
##sequence-region NZ_PYJX01000118.1 1 31456
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000118.1	RefSeq	region	1	31456	.	+	.	ID=NZ_PYJX01000118.1:1..31456;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000118.1	RefSeq	gene	1	1600	.	-	.	ID=gene-C9E96_RS09930;Name=C9E96_RS09930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09930;old_locus_tag=C9E96_10150;partial=true;start_range=.,1
NZ_PYJX01000118.1	Protein Homology	CDS	1	1600	.	-	0	ID=cds-WP_135494170.1;Parent=gene-C9E96_RS09930;Dbxref=GenBank:WP_135494170.1;Name=WP_135494170.1;Ontology_term=GO:0004519,GO:0005524,GO:0016887;gbkey=CDS;go_function=endonuclease activity|0004519||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461544.1;locus_tag=C9E96_RS09930;partial=true;product=phage terminase large subunit family protein;protein_id=WP_135494170.1;start_range=.,1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	1572	2117	.	-	.	ID=gene-C9E96_RS09935;Name=C9E96_RS09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09935;old_locus_tag=C9E96_10155
NZ_PYJX01000118.1	Protein Homology	CDS	1572	2117	.	-	0	ID=cds-WP_001102153.1;Parent=gene-C9E96_RS09935;Dbxref=GenBank:WP_001102153.1;Name=WP_001102153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461545.2;locus_tag=C9E96_RS09935;product=terminase small subunit;protein_id=WP_001102153.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	2162	2353	.	-	.	ID=gene-C9E96_RS09940;Name=C9E96_RS09940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09940;old_locus_tag=C9E96_10160
NZ_PYJX01000118.1	GeneMarkS-2+	CDS	2162	2353	.	-	0	ID=cds-WP_023223569.1;Parent=gene-C9E96_RS09940;Dbxref=GenBank:WP_023223569.1;Name=WP_023223569.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS09940;product=hypothetical protein;protein_id=WP_023223569.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	2376	2879	.	-	.	ID=gene-C9E96_RS09945;Name=C9E96_RS09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09945;old_locus_tag=C9E96_10165
NZ_PYJX01000118.1	Protein Homology	CDS	2376	2879	.	-	0	ID=cds-WP_023136440.1;Parent=gene-C9E96_RS09945;Dbxref=GenBank:WP_023136440.1;Name=WP_023136440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001252716.1;locus_tag=C9E96_RS09945;product=hypothetical protein;protein_id=WP_023136440.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	2982	3524	.	-	.	ID=gene-C9E96_RS09950;Name=C9E96_RS09950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09950;old_locus_tag=C9E96_10170
NZ_PYJX01000118.1	Protein Homology	CDS	2982	3524	.	-	0	ID=cds-WP_000636436.1;Parent=gene-C9E96_RS09950;Dbxref=GenBank:WP_000636436.1;Name=WP_000636436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000636436.1;locus_tag=C9E96_RS09950;product=DUF2514 family protein;protein_id=WP_000636436.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	3521	4135	.	-	.	ID=gene-C9E96_RS09955;Name=C9E96_RS09955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09955;old_locus_tag=C9E96_10175
NZ_PYJX01000118.1	Protein Homology	CDS	3521	4135	.	-	0	ID=cds-WP_135494172.1;Parent=gene-C9E96_RS09955;Dbxref=GenBank:WP_135494172.1;Name=WP_135494172.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459884.1;locus_tag=C9E96_RS09955;product=glycoside hydrolase family 19 protein;protein_id=WP_135494172.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	4135	4416	.	-	.	ID=gene-C9E96_RS09960;Name=C9E96_RS09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09960;old_locus_tag=C9E96_10180
NZ_PYJX01000118.1	Protein Homology	CDS	4135	4416	.	-	0	ID=cds-WP_021000643.1;Parent=gene-C9E96_RS09960;Dbxref=GenBank:WP_021000643.1;Name=WP_021000643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004899663.1;locus_tag=C9E96_RS09960;product=phage holin family protein;protein_id=WP_021000643.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	4403	4792	.	-	.	ID=gene-C9E96_RS09965;Name=C9E96_RS09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09965;old_locus_tag=C9E96_10185
NZ_PYJX01000118.1	Protein Homology	CDS	4403	4792	.	-	0	ID=cds-WP_001294875.1;Parent=gene-C9E96_RS09965;Dbxref=GenBank:WP_001294875.1;Name=WP_001294875.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001294874.1;locus_tag=C9E96_RS09965;product=phage holin family protein;protein_id=WP_001294875.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	5009	5458	.	+	.	ID=gene-C9E96_RS09970;Name=C9E96_RS09970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09970;old_locus_tag=C9E96_10190
NZ_PYJX01000118.1	Protein Homology	CDS	5009	5458	.	+	0	ID=cds-WP_023251956.1;Parent=gene-C9E96_RS09970;Dbxref=GenBank:WP_023251956.1;Name=WP_023251956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460000.1;locus_tag=C9E96_RS09970;product=hypothetical protein;protein_id=WP_023251956.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	5594	5719	.	-	.	ID=gene-C9E96_RS09975;Name=C9E96_RS09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09975;old_locus_tag=C9E96_10195
NZ_PYJX01000118.1	Protein Homology	CDS	5594	5719	.	-	0	ID=cds-WP_001534733.1;Parent=gene-C9E96_RS09975;Dbxref=GenBank:WP_001534733.1;Name=WP_001534733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459999.1;locus_tag=C9E96_RS09975;product=hypothetical protein;protein_id=WP_001534733.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	5931	6494	.	-	.	ID=gene-C9E96_RS09980;Name=C9E96_RS09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09980;old_locus_tag=C9E96_10200
NZ_PYJX01000118.1	Protein Homology	CDS	5931	6494	.	-	0	ID=cds-WP_045718200.1;Parent=gene-C9E96_RS09980;Dbxref=GenBank:WP_045718200.1;Name=WP_045718200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461551.1;locus_tag=C9E96_RS09980;product=ORF6N domain-containing protein;protein_id=WP_045718200.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	6767	7444	.	-	.	ID=gene-C9E96_RS09990;Name=C9E96_RS09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09990;old_locus_tag=C9E96_10210
NZ_PYJX01000118.1	Protein Homology	CDS	6767	7444	.	-	0	ID=cds-WP_044782379.1;Parent=gene-C9E96_RS09990;Dbxref=GenBank:WP_044782379.1;Name=WP_044782379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461552.1;locus_tag=C9E96_RS09990;product=bacteriophage antitermination protein Q;protein_id=WP_044782379.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	7441	7581	.	-	.	ID=gene-C9E96_RS09995;Name=C9E96_RS09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09995;old_locus_tag=C9E96_10215
NZ_PYJX01000118.1	Protein Homology	CDS	7441	7581	.	-	0	ID=cds-WP_000801757.1;Parent=gene-C9E96_RS09995;Dbxref=GenBank:WP_000801757.1;Name=WP_000801757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461553.1;locus_tag=C9E96_RS09995;product=YlcG family protein;protein_id=WP_000801757.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	7578	8189	.	-	.	ID=gene-C9E96_RS10000;Name=C9E96_RS10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10000;old_locus_tag=C9E96_10220
NZ_PYJX01000118.1	Protein Homology	CDS	7578	8189	.	-	0	ID=cds-WP_058653429.1;Parent=gene-C9E96_RS10000;Dbxref=GenBank:WP_058653429.1;Name=WP_058653429.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461554.1;locus_tag=C9E96_RS10000;product=recombination protein NinG;protein_id=WP_058653429.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	8192	8398	.	-	.	ID=gene-C9E96_RS24220;Name=C9E96_RS24220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24220;old_locus_tag=C9E96_10225
NZ_PYJX01000118.1	Protein Homology	CDS	8192	8398	.	-	0	ID=cds-WP_001241019.1;Parent=gene-C9E96_RS24220;Dbxref=GenBank:WP_001241019.1;Name=WP_001241019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528771.1;locus_tag=C9E96_RS24220;product=hypothetical protein;protein_id=WP_001241019.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	8398	9000	.	-	.	ID=gene-C9E96_RS10010;Name=C9E96_RS10010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10010;old_locus_tag=C9E96_10230
NZ_PYJX01000118.1	Protein Homology	CDS	8398	9000	.	-	0	ID=cds-WP_135494174.1;Parent=gene-C9E96_RS10010;Dbxref=GenBank:WP_135494174.1;Name=WP_135494174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459995.1;locus_tag=C9E96_RS10010;product=DUF1367 family protein;protein_id=WP_135494174.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	9415	9648	.	-	.	ID=gene-C9E96_RS10020;Name=C9E96_RS10020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10020;old_locus_tag=C9E96_10240
NZ_PYJX01000118.1	Protein Homology	CDS	9415	9648	.	-	0	ID=cds-WP_001217669.1;Parent=gene-C9E96_RS10020;Dbxref=GenBank:WP_001217669.1;Name=WP_001217669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459994.1;locus_tag=C9E96_RS10020;product=DinI family protein;protein_id=WP_001217669.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	9808	11793	.	-	.	ID=gene-C9E96_RS10025;Name=C9E96_RS10025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10025;old_locus_tag=C9E96_10245
NZ_PYJX01000118.1	Protein Homology	CDS	9808	11793	.	-	0	ID=cds-WP_167850621.1;Parent=gene-C9E96_RS10025;Dbxref=GenBank:WP_167850621.1;Name=WP_167850621.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024977.6;locus_tag=C9E96_RS10025;product=ATP-binding protein;protein_id=WP_167850621.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	11786	12826	.	-	.	ID=gene-C9E96_RS10030;Name=C9E96_RS10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10030;old_locus_tag=C9E96_10250
NZ_PYJX01000118.1	Protein Homology	CDS	11786	12826	.	-	0	ID=cds-WP_079986389.1;Parent=gene-C9E96_RS10030;Dbxref=GenBank:WP_079986389.1;Name=WP_079986389.1;Ontology_term=GO:0006304,GO:0003677,GO:0003886,GO:0008168,GO:1904047;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA (cytosine-5-)-methyltransferase activity|0003886||IEA,methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004953069.1;locus_tag=C9E96_RS10030;product=DNA cytosine methyltransferase;protein_id=WP_079986389.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	13062	13391	.	-	.	ID=gene-C9E96_RS10035;Name=C9E96_RS10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10035;old_locus_tag=C9E96_10255
NZ_PYJX01000118.1	Protein Homology	CDS	13062	13391	.	-	0	ID=cds-WP_245306710.1;Parent=gene-C9E96_RS10035;Dbxref=GenBank:WP_245306710.1;Name=WP_245306710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000092363.1;locus_tag=C9E96_RS10035;product=DNA-binding protein;protein_id=WP_245306710.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	13403	14098	.	-	.	ID=gene-C9E96_RS10040;Name=C9E96_RS10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10040;old_locus_tag=C9E96_10260
NZ_PYJX01000118.1	Protein Homology	CDS	13403	14098	.	-	0	ID=cds-WP_079986388.1;Parent=gene-C9E96_RS10040;Dbxref=GenBank:WP_079986388.1;Name=WP_079986388.1;Ontology_term=GO:0006270;gbkey=CDS;go_process=DNA replication initiation|0006270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000801766.1;locus_tag=C9E96_RS10040;product=replication protein P;protein_id=WP_079986388.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	14095	14931	.	-	.	ID=gene-C9E96_RS10045;Name=C9E96_RS10045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10045;old_locus_tag=C9E96_10265
NZ_PYJX01000118.1	Protein Homology	CDS	14095	14931	.	-	0	ID=cds-WP_079986387.1;Parent=gene-C9E96_RS10045;Dbxref=GenBank:WP_079986387.1;Name=WP_079986387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000024043.1;locus_tag=C9E96_RS10045;product=replication protein;protein_id=WP_079986387.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	15023	15343	.	-	.	ID=gene-C9E96_RS10050;Name=C9E96_RS10050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10050;old_locus_tag=C9E96_10270
NZ_PYJX01000118.1	Protein Homology	CDS	15023	15343	.	-	0	ID=cds-WP_000426364.1;Parent=gene-C9E96_RS10050;Dbxref=GenBank:WP_000426364.1;Name=WP_000426364.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459988.1;locus_tag=C9E96_RS10050;product=CII family transcriptional regulator;protein_id=WP_000426364.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	15363	15602	.	-	.	ID=gene-C9E96_RS10055;Name=C9E96_RS10055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10055;old_locus_tag=C9E96_10275
NZ_PYJX01000118.1	Protein Homology	CDS	15363	15602	.	-	0	ID=cds-WP_079795724.1;Parent=gene-C9E96_RS10055;Dbxref=GenBank:WP_079795724.1;Name=WP_079795724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000370145.1;locus_tag=C9E96_RS10055;product=hypothetical protein;protein_id=WP_079795724.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	15722	16132	.	+	.	ID=gene-C9E96_RS10060;Name=C9E96_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10060;old_locus_tag=C9E96_10280
NZ_PYJX01000118.1	Protein Homology	CDS	15722	16132	.	+	0	ID=cds-WP_001038966.1;Parent=gene-C9E96_RS10060;Dbxref=GenBank:WP_001038966.1;Name=WP_001038966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459987.1;locus_tag=C9E96_RS10060;product=helix-turn-helix domain-containing protein;protein_id=WP_001038966.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	pseudogene	16176	16442	.	+	.	ID=gene-C9E96_RS24225;Name=C9E96_RS24225;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24225;pseudo=true
NZ_PYJX01000118.1	Protein Homology	CDS	16176	16442	.	+	0	ID=cds-C9E96_RS24225;Parent=gene-C9E96_RS24225;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461564.1;locus_tag=C9E96_RS24225;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	16435	16605	.	+	.	ID=gene-C9E96_RS23955;Name=C9E96_RS23955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23955
NZ_PYJX01000118.1	Protein Homology	CDS	16435	16605	.	+	0	ID=cds-WP_000917690.1;Parent=gene-C9E96_RS23955;Dbxref=GenBank:WP_000917690.1;Name=WP_000917690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000917690.1;locus_tag=C9E96_RS23955;product=YdaE family protein;protein_id=WP_000917690.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	16746	19661	.	+	.	ID=gene-C9E96_RS10065;Name=C9E96_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10065;old_locus_tag=C9E96_10285
NZ_PYJX01000118.1	Protein Homology	CDS	16746	19661	.	+	0	ID=cds-WP_135369856.1;Parent=gene-C9E96_RS10065;Dbxref=GenBank:WP_135369856.1;Name=WP_135369856.1;Ontology_term=GO:0090304,GO:0051908;gbkey=CDS;go_function=double-stranded DNA 5'-3' DNA exonuclease activity|0051908||IEA;go_process=nucleic acid metabolic process|0090304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000394221.1;locus_tag=C9E96_RS10065;product=RecE family exodeoxyribonuclease;protein_id=WP_135369856.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	19624	20781	.	+	.	ID=gene-C9E96_RS10070;Name=C9E96_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10070;old_locus_tag=C9E96_10290
NZ_PYJX01000118.1	Protein Homology	CDS	19624	20781	.	+	0	ID=cds-WP_080183590.1;Parent=gene-C9E96_RS10070;Dbxref=GenBank:WP_080183590.1;Name=WP_080183590.1;Ontology_term=GO:0006310,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459983.3;locus_tag=C9E96_RS10070;product=RecT family recombinase;protein_id=WP_080183590.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	20824	21063	.	+	.	ID=gene-C9E96_RS10075;Name=C9E96_RS10075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10075;old_locus_tag=C9E96_10295
NZ_PYJX01000118.1	Protein Homology	CDS	20824	21063	.	+	0	ID=cds-WP_001237031.1;Parent=gene-C9E96_RS10075;Dbxref=GenBank:WP_001237031.1;Name=WP_001237031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459982.1;locus_tag=C9E96_RS10075;product=DUF4060 family protein;protein_id=WP_001237031.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	21104	21352	.	+	.	ID=gene-C9E96_RS10080;Name=xis;gbkey=Gene;gene=xis;gene_biotype=protein_coding;locus_tag=C9E96_RS10080;old_locus_tag=C9E96_10300
NZ_PYJX01000118.1	Protein Homology	CDS	21104	21352	.	+	0	ID=cds-WP_000065276.1;Parent=gene-C9E96_RS10080;Dbxref=GenBank:WP_000065276.1;Name=WP_000065276.1;gbkey=CDS;gene=xis;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459981.1;locus_tag=C9E96_RS10080;product=excisionase Xis;protein_id=WP_000065276.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	21397	22689	.	+	.	ID=gene-C9E96_RS10085;Name=int;gbkey=Gene;gene=int;gene_biotype=protein_coding;locus_tag=C9E96_RS10085;old_locus_tag=C9E96_10305
NZ_PYJX01000118.1	Protein Homology	CDS	21397	22689	.	+	0	ID=cds-WP_001262307.1;Parent=gene-C9E96_RS10085;Dbxref=GenBank:WP_001262307.1;Name=WP_001262307.1;gbkey=CDS;gene=int;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459980.1;locus_tag=C9E96_RS10085;product=FimB-specific integrase Int;protein_id=WP_001262307.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	22884	24086	.	+	.	ID=gene-C9E96_RS10090;Name=pncB;gbkey=Gene;gene=pncB;gene_biotype=protein_coding;locus_tag=C9E96_RS10090;old_locus_tag=C9E96_10310
NZ_PYJX01000118.1	Protein Homology	CDS	22884	24086	.	+	0	ID=cds-WP_080204057.1;Parent=gene-C9E96_RS10090;Dbxref=GenBank:WP_080204057.1;Name=WP_080204057.1;Ontology_term=GO:0009435,GO:0004516;gbkey=CDS;gene=pncB;go_function=nicotinate phosphoribosyltransferase activity|0004516||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459979.1;locus_tag=C9E96_RS10090;product=nicotinate phosphoribosyltransferase;protein_id=WP_080204057.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	24167	25600	.	-	.	ID=gene-C9E96_RS10095;Name=C9E96_RS10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10095;old_locus_tag=C9E96_10315
NZ_PYJX01000118.1	Protein Homology	CDS	24167	25600	.	-	0	ID=cds-WP_000893191.1;Parent=gene-C9E96_RS10095;Dbxref=GenBank:WP_000893191.1;Name=WP_000893191.1;Ontology_term=GO:0006814,GO:0006865,GO:0005283,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid:sodium symporter activity|0005283||IEA,symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524705.1;locus_tag=C9E96_RS10095;product=alanine/glycine:cation symporter family protein;protein_id=WP_000893191.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	25846	27060	.	-	.	ID=gene-C9E96_RS10100;Name=dpaL;gbkey=Gene;gene=dpaL;gene_biotype=protein_coding;locus_tag=C9E96_RS10100;old_locus_tag=C9E96_10320
NZ_PYJX01000118.1	Protein Homology	CDS	25846	27060	.	-	0	ID=cds-WP_020438006.1;Parent=gene-C9E96_RS10100;Dbxref=GenBank:WP_020438006.1;Name=WP_020438006.1;Ontology_term=GO:0008838,GO:0030170;gbkey=CDS;gene=dpaL;go_function=diaminopropionate ammonia-lyase activity|0008838||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459977.1;locus_tag=C9E96_RS10100;product=diaminopropionate ammonia-lyase;protein_id=WP_020438006.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	27377	27838	.	+	.	ID=gene-C9E96_RS10110;Name=C9E96_RS10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10110;old_locus_tag=C9E96_10330
NZ_PYJX01000118.1	Protein Homology	CDS	27377	27838	.	+	0	ID=cds-WP_000762342.1;Parent=gene-C9E96_RS10110;Dbxref=GenBank:WP_000762342.1;Name=WP_000762342.1;Ontology_term=GO:0043565;gbkey=CDS;go_function=sequence-specific DNA binding|0043565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459976.1;locus_tag=C9E96_RS10110;product=Lrp/AsnC family transcriptional regulator;protein_id=WP_000762342.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	28039	29439	.	+	.	ID=gene-C9E96_RS10115;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;locus_tag=C9E96_RS10115;old_locus_tag=C9E96_10335
NZ_PYJX01000118.1	Protein Homology	CDS	28039	29439	.	+	0	ID=cds-WP_000117870.1;Parent=gene-C9E96_RS10115;Dbxref=GenBank:WP_000117870.1;Name=WP_000117870.1;Ontology_term=GO:0006421,GO:0004816,GO:0005524;gbkey=CDS;gene=asnS;go_function=asparagine-tRNA ligase activity|0004816||IEA,ATP binding|0005524||IEA;go_process=asparaginyl-tRNA aminoacylation|0006421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123540.1;locus_tag=C9E96_RS10115;product=asparagine--tRNA ligase;protein_id=WP_000117870.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	gene	30046	31137	.	+	.	ID=gene-C9E96_RS10120;Name=ompF;gbkey=Gene;gene=ompF;gene_biotype=protein_coding;locus_tag=C9E96_RS10120;old_locus_tag=C9E96_10340
NZ_PYJX01000118.1	Protein Homology	CDS	30046	31137	.	+	0	ID=cds-WP_000977709.1;Parent=gene-C9E96_RS10120;Dbxref=GenBank:WP_000977709.1;Name=WP_000977709.1;gbkey=CDS;gene=ompF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459974.1;locus_tag=C9E96_RS10120;product=porin OmpF;protein_id=WP_000977709.1;transl_table=11
NZ_PYJX01000118.1	RefSeq	pseudogene	31322	31456	.	+	.	ID=gene-C9E96_RS10125;Name=C9E96_RS10125;end_range=31456,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS10125;old_locus_tag=C9E96_10345;partial=true;pseudo=true
NZ_PYJX01000118.1	Protein Homology	CDS	31322	31456	.	+	0	ID=cds-C9E96_RS10125;Parent=gene-C9E96_RS10125;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=31456,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009653304.1;locus_tag=C9E96_RS10125;partial=true;product=aromatic amino acid aminotransferase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000072.1 1 30865
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000072.1	RefSeq	region	1	30865	.	+	.	ID=NZ_PYJX01000072.1:1..30865;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000072.1	RefSeq	gene	381	1817	.	-	.	ID=gene-C9E96_RS06030;Name=iolT2;gbkey=Gene;gene=iolT2;gene_biotype=protein_coding;locus_tag=C9E96_RS06030;old_locus_tag=C9E96_06170
NZ_PYJX01000072.1	Protein Homology	CDS	381	1817	.	-	0	ID=cds-WP_023993516.1;Parent=gene-C9E96_RS06030;Dbxref=GenBank:WP_023993516.1;Name=WP_023993516.1;gbkey=CDS;gene=iolT2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463280.1;locus_tag=C9E96_RS06030;product=myo-inositol import MFS transporter IolT2;protein_id=WP_023993516.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	1854	2048	.	+	.	ID=gene-C9E96_RS06035;Name=C9E96_RS06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06035;old_locus_tag=C9E96_06175
NZ_PYJX01000072.1	GeneMarkS-2+	CDS	1854	2048	.	+	0	ID=cds-WP_023994381.1;Parent=gene-C9E96_RS06035;Dbxref=GenBank:WP_023994381.1;Name=WP_023994381.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS06035;product=hypothetical protein;protein_id=WP_023994381.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	2276	3709	.	+	.	ID=gene-C9E96_RS06040;Name=iolT1;gbkey=Gene;gene=iolT1;gene_biotype=protein_coding;locus_tag=C9E96_RS06040;old_locus_tag=C9E96_06180
NZ_PYJX01000072.1	Protein Homology	CDS	2276	3709	.	+	0	ID=cds-WP_000107709.1;Parent=gene-C9E96_RS06040;Dbxref=GenBank:WP_000107709.1;Name=WP_000107709.1;gbkey=CDS;gene=iolT1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463279.1;locus_tag=C9E96_RS06040;product=myo-inositol import MFS transporter IolT1;protein_id=WP_000107709.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	3760	4593	.	-	.	ID=gene-C9E96_RS06045;Name=iolR;gbkey=Gene;gene=iolR;gene_biotype=protein_coding;locus_tag=C9E96_RS06045;old_locus_tag=C9E96_06185
NZ_PYJX01000072.1	Protein Homology	CDS	3760	4593	.	-	0	ID=cds-WP_000033840.1;Parent=gene-C9E96_RS06045;Dbxref=GenBank:WP_000033840.1;Name=WP_000033840.1;gbkey=CDS;gene=iolR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463278.1;locus_tag=C9E96_RS06045;product=myo-inositol utilization transcriptional regulator IolR;protein_id=WP_000033840.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	5084	6463	.	-	.	ID=gene-C9E96_RS06055;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=C9E96_RS06055;old_locus_tag=C9E96_06195
NZ_PYJX01000072.1	Protein Homology	CDS	5084	6463	.	-	0	ID=cds-WP_058107302.1;Parent=gene-C9E96_RS06055;Dbxref=GenBank:WP_058107302.1;Name=WP_058107302.1;Ontology_term=GO:0009252,GO:0071555,GO:0016881;gbkey=CDS;gene=mpl;go_function=acid-amino acid ligase activity|0016881||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463277.1;locus_tag=C9E96_RS06055;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_058107302.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	6638	7636	.	+	.	ID=gene-C9E96_RS06060;Name=fbp;gbkey=Gene;gene=fbp;gene_biotype=protein_coding;locus_tag=C9E96_RS06060;old_locus_tag=C9E96_06200
NZ_PYJX01000072.1	Protein Homology	CDS	6638	7636	.	+	0	ID=cds-WP_000853764.1;Parent=gene-C9E96_RS06060;Dbxref=GenBank:WP_000853764.1;Name=WP_000853764.1;Ontology_term=GO:0005975,GO:0042132;gbkey=CDS;gene=fbp;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233757.1;locus_tag=C9E96_RS06060;product=class 1 fructose-bisphosphatase;protein_id=WP_000853764.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	7863	8393	.	+	.	ID=gene-C9E96_RS06065;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=C9E96_RS06065;old_locus_tag=C9E96_06205
NZ_PYJX01000072.1	Protein Homology	CDS	7863	8393	.	+	0	ID=cds-WP_000055079.1;Parent=gene-C9E96_RS06065;Dbxref=GenBank:WP_000055079.1;Name=WP_000055079.1;Ontology_term=GO:0006796,GO:0004427;gbkey=CDS;gene=ppa;go_function=inorganic diphosphate phosphatase activity|0004427||IEA;go_process=phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001739810.1;locus_tag=C9E96_RS06065;product=inorganic diphosphatase;protein_id=WP_000055079.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	8803	9966	.	+	.	ID=gene-C9E96_RS06070;Name=C9E96_RS06070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06070;old_locus_tag=C9E96_06210
NZ_PYJX01000072.1	Protein Homology	CDS	8803	9966	.	+	0	ID=cds-WP_000977207.1;Parent=gene-C9E96_RS06070;Dbxref=GenBank:WP_000977207.1;Name=WP_000977207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463274.1;locus_tag=C9E96_RS06070;product=metallo-dependent hydrolase;protein_id=WP_000977207.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	9963	11171	.	+	.	ID=gene-C9E96_RS06075;Name=C9E96_RS06075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06075;old_locus_tag=C9E96_06215
NZ_PYJX01000072.1	Protein Homology	CDS	9963	11171	.	+	0	ID=cds-WP_000203131.1;Parent=gene-C9E96_RS06075;Dbxref=GenBank:WP_000203131.1;Name=WP_000203131.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463273.1;locus_tag=C9E96_RS06075;product=MFS transporter;protein_id=WP_000203131.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	11225	11569	.	-	.	ID=gene-C9E96_RS06080;Name=C9E96_RS06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06080;old_locus_tag=C9E96_06220
NZ_PYJX01000072.1	Protein Homology	CDS	11225	11569	.	-	0	ID=cds-WP_001219167.1;Parent=gene-C9E96_RS06080;Dbxref=GenBank:WP_001219167.1;Name=WP_001219167.1;Ontology_term=GO:0061929;gbkey=CDS;go_function=gamma-glutamylaminecyclotransferase activity|0061929||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463272.1;locus_tag=C9E96_RS06080;product=gamma-glutamylcyclotransferase family protein;protein_id=WP_001219167.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	11572	15351	.	-	.	ID=gene-C9E96_RS06085;Name=tamB;gbkey=Gene;gene=tamB;gene_biotype=protein_coding;locus_tag=C9E96_RS06085;old_locus_tag=C9E96_06225
NZ_PYJX01000072.1	Protein Homology	CDS	11572	15351	.	-	0	ID=cds-WP_135493964.1;Parent=gene-C9E96_RS06085;Dbxref=GenBank:WP_135493964.1;Name=WP_135493964.1;Ontology_term=GO:0009306,GO:0089705;gbkey=CDS;gene=tamB;go_process=protein secretion|0009306||IEA,protein localization to outer membrane|0089705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463271.1;locus_tag=C9E96_RS06085;product=autotransporter assembly complex protein TamB;protein_id=WP_135493964.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	15348	17081	.	-	.	ID=gene-C9E96_RS06090;Name=tamA;gbkey=Gene;gene=tamA;gene_biotype=protein_coding;locus_tag=C9E96_RS06090;old_locus_tag=C9E96_06230
NZ_PYJX01000072.1	Protein Homology	CDS	15348	17081	.	-	0	ID=cds-WP_001120235.1;Parent=gene-C9E96_RS06090;Dbxref=GenBank:WP_001120235.1;Name=WP_001120235.1;Ontology_term=GO:0009306,GO:0089705;gbkey=CDS;gene=tamA;go_process=protein secretion|0009306||IEA,protein localization to outer membrane|0089705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463270.1;locus_tag=C9E96_RS06090;product=autotransporter assembly complex protein TamA;protein_id=WP_001120235.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	17294	17932	.	+	.	ID=gene-C9E96_RS06095;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=C9E96_RS06095;old_locus_tag=C9E96_06235
NZ_PYJX01000072.1	Protein Homology	CDS	17294	17932	.	+	0	ID=cds-WP_000051472.1;Parent=gene-C9E96_RS06095;Dbxref=GenBank:WP_000051472.1;Name=WP_000051472.1;Ontology_term=GO:0006979,GO:0030091,GO:0008113,GO:0033744;gbkey=CDS;gene=msrA;go_function=peptide-methionine (S)-S-oxide reductase activity|0008113||IEA,L-methionine:thioredoxin-disulfide S-oxidoreductase activity|0033744||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463269.1;locus_tag=C9E96_RS06095;product=peptide-methionine (S)-S-oxide reductase MsrA;protein_id=WP_000051472.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	18115	19458	.	+	.	ID=gene-C9E96_RS06100;Name=C9E96_RS06100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06100;old_locus_tag=C9E96_06240
NZ_PYJX01000072.1	Protein Homology	CDS	18115	19458	.	+	0	ID=cds-WP_080203664.1;Parent=gene-C9E96_RS06100;Dbxref=GenBank:WP_080203664.1;Name=WP_080203664.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463268.1;locus_tag=C9E96_RS06100;product=hemolysin family protein;protein_id=WP_080203664.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	19543	19749	.	-	.	ID=gene-C9E96_RS06105;Name=C9E96_RS06105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06105;old_locus_tag=C9E96_06245
NZ_PYJX01000072.1	Protein Homology	CDS	19543	19749	.	-	0	ID=cds-WP_000689229.1;Parent=gene-C9E96_RS06105;Dbxref=GenBank:WP_000689229.1;Name=WP_000689229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966176.1;locus_tag=C9E96_RS06105;product=DUF1107 domain-containing protein;protein_id=WP_000689229.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	20076	20633	.	+	.	ID=gene-C9E96_RS06115;Name=C9E96_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06115;old_locus_tag=C9E96_06255
NZ_PYJX01000072.1	Protein Homology	CDS	20076	20633	.	+	0	ID=cds-WP_023250336.1;Parent=gene-C9E96_RS06115;Dbxref=GenBank:WP_023250336.1;Name=WP_023250336.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463266.1;locus_tag=C9E96_RS06115;product=YtfJ family protein;protein_id=WP_023250336.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	20623	21363	.	-	.	ID=gene-C9E96_RS06120;Name=cysQ;gbkey=Gene;gene=cysQ;gene_biotype=protein_coding;locus_tag=C9E96_RS06120;old_locus_tag=C9E96_06260
NZ_PYJX01000072.1	Protein Homology	CDS	20623	21363	.	-	0	ID=cds-WP_000893398.1;Parent=gene-C9E96_RS06120;Dbxref=GenBank:WP_000893398.1;Name=WP_000893398.1;Ontology_term=GO:0000287,GO:0008441;gbkey=CDS;gene=cysQ;go_function=magnesium ion binding|0000287||IEA,3'(2')%2C5'-bisphosphate nucleotidase activity|0008441||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463265.1;locus_tag=C9E96_RS06120;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=WP_000893398.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	21631	23574	.	+	.	ID=gene-C9E96_RS06130;Name=C9E96_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06130;old_locus_tag=C9E96_06270
NZ_PYJX01000072.1	Protein Homology	CDS	21631	23574	.	+	0	ID=cds-WP_135493966.1;Parent=gene-C9E96_RS06130;Dbxref=GenBank:WP_135493966.1;Name=WP_135493966.1;Ontology_term=GO:0009166,GO:0000166,GO:0008663,GO:0016788;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase activity|0008663||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463264.1;locus_tag=C9E96_RS06130;product=bifunctional 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;protein_id=WP_135493966.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	23632	24018	.	-	.	ID=gene-C9E96_RS06135;Name=C9E96_RS06135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06135;old_locus_tag=C9E96_06275
NZ_PYJX01000072.1	Protein Homology	CDS	23632	24018	.	-	0	ID=cds-WP_001201296.1;Parent=gene-C9E96_RS06135;Dbxref=GenBank:WP_001201296.1;Name=WP_001201296.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463263.1;locus_tag=C9E96_RS06135;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_001201296.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	24106	24954	.	+	.	ID=gene-C9E96_RS06140;Name=C9E96_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06140;old_locus_tag=C9E96_06280
NZ_PYJX01000072.1	Protein Homology	CDS	24106	24954	.	+	0	ID=cds-WP_135493968.1;Parent=gene-C9E96_RS06140;Dbxref=GenBank:WP_135493968.1;Name=WP_135493968.1;Ontology_term=GO:0016655;gbkey=CDS;go_function=oxidoreductase activity%2C acting on NAD(P)H%2C quinone or similar compound as acceptor|0016655||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463262.1;locus_tag=C9E96_RS06140;product=SDR family oxidoreductase;protein_id=WP_135493968.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	25035	26000	.	+	.	ID=gene-C9E96_RS06145;Name=C9E96_RS06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06145;old_locus_tag=C9E96_06285
NZ_PYJX01000072.1	Protein Homology	CDS	25035	26000	.	+	0	ID=cds-WP_080219666.1;Parent=gene-C9E96_RS06145;Dbxref=GenBank:WP_080219666.1;Name=WP_080219666.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463261.1;locus_tag=C9E96_RS06145;product=DMT family transporter;protein_id=WP_080219666.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	26103	26765	.	+	.	ID=gene-C9E96_RS06150;Name=ytfE;gbkey=Gene;gene=ytfE;gene_biotype=protein_coding;locus_tag=C9E96_RS06150;old_locus_tag=C9E96_06290
NZ_PYJX01000072.1	Protein Homology	CDS	26103	26765	.	+	0	ID=cds-WP_000331476.1;Parent=gene-C9E96_RS06150;Dbxref=GenBank:WP_000331476.1;Name=WP_000331476.1;gbkey=CDS;gene=ytfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463260.1;locus_tag=C9E96_RS06150;product=iron-sulfur cluster repair protein YtfE;protein_id=WP_000331476.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	26877	28286	.	-	.	ID=gene-C9E96_RS06155;Name=cycA;gbkey=Gene;gene=cycA;gene_biotype=protein_coding;gene_synonym=dagA;locus_tag=C9E96_RS06155;old_locus_tag=C9E96_06295
NZ_PYJX01000072.1	Protein Homology	CDS	26877	28286	.	-	0	ID=cds-WP_000228322.1;Parent=gene-C9E96_RS06155;Dbxref=GenBank:WP_000228322.1;Name=WP_000228322.1;Ontology_term=GO:0006865,GO:0055085,GO:0016020;gbkey=CDS;gene=cycA;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463259.1;locus_tag=C9E96_RS06155;product=D-serine/D-alanine/glycine transporter;protein_id=WP_000228322.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	28582	29202	.	-	.	ID=gene-C9E96_RS06160;Name=fklB;gbkey=Gene;gene=fklB;gene_biotype=protein_coding;locus_tag=C9E96_RS06160;old_locus_tag=C9E96_06300
NZ_PYJX01000072.1	Protein Homology	CDS	28582	29202	.	-	0	ID=cds-WP_000235161.1;Parent=gene-C9E96_RS06160;Dbxref=GenBank:WP_000235161.1;Name=WP_000235161.1;gbkey=CDS;gene=fklB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015742582.1;locus_tag=C9E96_RS06160;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000235161.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	gene	29422	30057	.	+	.	ID=gene-C9E96_RS06165;Name=C9E96_RS06165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06165;old_locus_tag=C9E96_06310
NZ_PYJX01000072.1	Protein Homology	CDS	29422	30057	.	+	0	ID=cds-WP_001119448.1;Parent=gene-C9E96_RS06165;Dbxref=GenBank:WP_001119448.1;Name=WP_001119448.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463257.1;locus_tag=C9E96_RS06165;product=OapA family protein;protein_id=WP_001119448.1;transl_table=11
NZ_PYJX01000072.1	RefSeq	pseudogene	30107	30826	.	-	.	ID=gene-C9E96_RS06170;Name=C9E96_RS06170;end_range=30826,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS06170;old_locus_tag=C9E96_06315;partial=true;pseudo=true
NZ_PYJX01000072.1	Protein Homology	CDS	30107	30826	.	-	0	ID=cds-C9E96_RS06170;Parent=gene-C9E96_RS06170;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0055085,GO:0022857,GO:0016020;end_range=30826,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463256.1;locus_tag=C9E96_RS06170;partial=true;product=DMT family transporter;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000082.1 1 30482
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000082.1	RefSeq	region	1	30482	.	+	.	ID=NZ_PYJX01000082.1:1..30482;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000082.1	RefSeq	gene	71	481	.	-	.	ID=gene-C9E96_RS06990;Name=hiuH;gbkey=Gene;gene=hiuH;gene_biotype=protein_coding;locus_tag=C9E96_RS06990;old_locus_tag=C9E96_07165
NZ_PYJX01000082.1	Protein Homology	CDS	71	481	.	-	0	ID=cds-WP_000833182.1;Parent=gene-C9E96_RS06990;Dbxref=GenBank:WP_000833182.1;Name=WP_000833182.1;gbkey=CDS;gene=hiuH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460070.1;locus_tag=C9E96_RS06990;product=hydroxyisourate hydrolase;protein_id=WP_000833182.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	617	1072	.	+	.	ID=gene-C9E96_RS06995;Name=C9E96_RS06995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06995;old_locus_tag=C9E96_07170
NZ_PYJX01000082.1	Protein Homology	CDS	617	1072	.	+	0	ID=cds-WP_135494023.1;Parent=gene-C9E96_RS06995;Dbxref=GenBank:WP_135494023.1;Name=WP_135494023.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000698203.1;locus_tag=C9E96_RS06995;product=response regulator;protein_id=WP_135494023.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	1065	2429	.	+	.	ID=gene-C9E96_RS07000;Name=C9E96_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07000;old_locus_tag=C9E96_07175
NZ_PYJX01000082.1	Protein Homology	CDS	1065	2429	.	+	0	ID=cds-WP_080203872.1;Parent=gene-C9E96_RS07000;Dbxref=GenBank:WP_080203872.1;Name=WP_080203872.1;Ontology_term=GO:0000160,GO:0016310,GO:0000155,GO:0004673,GO:0016772,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447527.1;locus_tag=C9E96_RS07000;product=heavy metal sensor histidine kinase;protein_id=WP_080203872.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	2602	4071	.	+	.	ID=gene-C9E96_RS07005;Name=C9E96_RS07005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07005;old_locus_tag=C9E96_07180
NZ_PYJX01000082.1	Protein Homology	CDS	2602	4071	.	+	0	ID=cds-WP_000760235.1;Parent=gene-C9E96_RS07005;Dbxref=GenBank:WP_000760235.1;Name=WP_000760235.1;Ontology_term=GO:0006508,GO:0016805;gbkey=CDS;go_function=dipeptidase activity|0016805||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460067.1;locus_tag=C9E96_RS07005;product=C69 family dipeptidase;protein_id=WP_000760235.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	4180	4290	.	+	.	ID=gene-C9E96_RS07010;Name=C9E96_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07010;old_locus_tag=C9E96_07185
NZ_PYJX01000082.1	Protein Homology	CDS	4180	4290	.	+	0	ID=cds-WP_020898651.1;Parent=gene-C9E96_RS07010;Dbxref=GenBank:WP_020898651.1;Name=WP_020898651.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447525.1;locus_tag=C9E96_RS07010;product=hypothetical protein;protein_id=WP_020898651.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	4291	4461	.	-	.	ID=gene-C9E96_RS07015;Name=C9E96_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07015;old_locus_tag=C9E96_07190
NZ_PYJX01000082.1	Protein Homology	CDS	4291	4461	.	-	0	ID=cds-WP_001111006.1;Parent=gene-C9E96_RS07015;Dbxref=GenBank:WP_001111006.1;Name=WP_001111006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460065.1;locus_tag=C9E96_RS07015;product=YlcI/YnfO family protein;protein_id=WP_001111006.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	4794	6479	.	+	.	ID=gene-C9E96_RS07020;Name=sopB;gbkey=Gene;gene=sopB;gene_biotype=protein_coding;locus_tag=C9E96_RS07020;old_locus_tag=C9E96_07195
NZ_PYJX01000082.1	Protein Homology	CDS	4794	6479	.	+	0	ID=cds-WP_080203871.1;Parent=gene-C9E96_RS07020;Dbxref=GenBank:WP_080203871.1;Name=WP_080203871.1;gbkey=CDS;gene=sopB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460064.1;locus_tag=C9E96_RS07020;product=SPI-1 type III secretion system effector inositol phosphate phosphatase SopB;protein_id=WP_080203871.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	6496	6837	.	+	.	ID=gene-C9E96_RS07025;Name=sigE;gbkey=Gene;gene=sigE;gene_biotype=protein_coding;locus_tag=C9E96_RS07025;old_locus_tag=C9E96_07200
NZ_PYJX01000082.1	Protein Homology	CDS	6496	6837	.	+	0	ID=cds-WP_000444724.1;Parent=gene-C9E96_RS07025;Dbxref=GenBank:WP_000444724.1;Name=WP_000444724.1;gbkey=CDS;gene=sigE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460063.1;locus_tag=C9E96_RS07025;product=type III secretion system chaperone SigE;protein_id=WP_000444724.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	6847	7167	.	-	.	ID=gene-C9E96_RS07030;Name=C9E96_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07030;old_locus_tag=C9E96_07205
NZ_PYJX01000082.1	Protein Homology	CDS	6847	7167	.	-	0	ID=cds-WP_080203882.1;Parent=gene-C9E96_RS07030;Dbxref=GenBank:WP_080203882.1;Name=WP_080203882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460062.1;locus_tag=C9E96_RS07030;product=hypothetical protein;protein_id=WP_080203882.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	7391	8266	.	+	.	ID=gene-C9E96_RS07035;Name=pipB;gbkey=Gene;gene=pipB;gene_biotype=protein_coding;locus_tag=C9E96_RS07035;old_locus_tag=C9E96_07210
NZ_PYJX01000082.1	Protein Homology	CDS	7391	8266	.	+	0	ID=cds-WP_080203870.1;Parent=gene-C9E96_RS07035;Dbxref=GenBank:WP_080203870.1;Name=WP_080203870.1;gbkey=CDS;gene=pipB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460061.1;locus_tag=C9E96_RS07035;product=SPI-2 type III secretion system effector PipB;protein_id=WP_080203870.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	8489	9169	.	+	.	ID=gene-C9E96_RS07040;Name=pipA;gbkey=Gene;gene=pipA;gene_biotype=protein_coding;locus_tag=C9E96_RS07040;old_locus_tag=C9E96_07215
NZ_PYJX01000082.1	Protein Homology	CDS	8489	9169	.	+	0	ID=cds-WP_000938182.1;Parent=gene-C9E96_RS07040;Dbxref=GenBank:WP_000938182.1;Name=WP_000938182.1;gbkey=CDS;gene=pipA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460060.1;locus_tag=C9E96_RS07040;product=type III secretion system effector protease PipA;protein_id=WP_000938182.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	9305	9392	.	-	.	ID=gene-C9E96_RS07045;Name=C9E96_RS07045;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS07045;old_locus_tag=C9E96_07220
NZ_PYJX01000082.1	tRNAscan-SE	tRNA	9305	9392	.	-	.	ID=rna-C9E96_RS07045;Parent=gene-C9E96_RS07045;anticodon=(pos:complement(9356..9358));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS07045;product=tRNA-Ser
NZ_PYJX01000082.1	tRNAscan-SE	exon	9305	9392	.	-	.	ID=exon-C9E96_RS07045-1;Parent=rna-C9E96_RS07045;anticodon=(pos:complement(9356..9358));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS07045;product=tRNA-Ser
NZ_PYJX01000082.1	RefSeq	gene	9787	10446	.	+	.	ID=gene-C9E96_RS07050;Name=yccA;gbkey=Gene;gene=yccA;gene_biotype=protein_coding;locus_tag=C9E96_RS07050;old_locus_tag=C9E96_07225
NZ_PYJX01000082.1	Protein Homology	CDS	9787	10446	.	+	0	ID=cds-WP_000374046.1;Parent=gene-C9E96_RS07050;Dbxref=GenBank:WP_000374046.1;Name=WP_000374046.1;gbkey=CDS;gene=yccA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000375124.1;locus_tag=C9E96_RS07050;product=FtsH protease modulator YccA;protein_id=WP_000374046.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	10533	10862	.	+	.	ID=gene-C9E96_RS07055;Name=tusE;gbkey=Gene;gene=tusE;gene_biotype=protein_coding;locus_tag=C9E96_RS07055;old_locus_tag=C9E96_07230
NZ_PYJX01000082.1	Protein Homology	CDS	10533	10862	.	+	0	ID=cds-WP_000904449.1;Parent=gene-C9E96_RS07055;Dbxref=GenBank:WP_000904449.1;Name=WP_000904449.1;gbkey=CDS;gene=tusE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460058.1;locus_tag=C9E96_RS07055;product=sulfurtransferase TusE;protein_id=WP_000904449.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	10859	11140	.	-	.	ID=gene-C9E96_RS07060;Name=yccX;gbkey=Gene;gene=yccX;gene_biotype=protein_coding;locus_tag=C9E96_RS07060;old_locus_tag=C9E96_07235
NZ_PYJX01000082.1	Protein Homology	CDS	10859	11140	.	-	0	ID=cds-WP_000072884.1;Parent=gene-C9E96_RS07060;Dbxref=GenBank:WP_000072884.1;Name=WP_000072884.1;Ontology_term=GO:0003998;gbkey=CDS;gene=yccX;go_function=acylphosphatase activity|0003998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460057.1;locus_tag=C9E96_RS07060;product=acylphosphatase;protein_id=WP_000072884.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	11189	11968	.	-	.	ID=gene-C9E96_RS07065;Name=C9E96_RS07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07065;old_locus_tag=C9E96_07240
NZ_PYJX01000082.1	Protein Homology	CDS	11189	11968	.	-	0	ID=cds-WP_023993503.1;Parent=gene-C9E96_RS07065;Dbxref=GenBank:WP_023993503.1;Name=WP_023993503.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460056.1;locus_tag=C9E96_RS07065;product=helix-turn-helix transcriptional regulator;protein_id=WP_023993503.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	11994	12542	.	-	.	ID=gene-C9E96_RS07070;Name=C9E96_RS07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07070;old_locus_tag=C9E96_07245
NZ_PYJX01000082.1	Protein Homology	CDS	11994	12542	.	-	0	ID=cds-WP_079841770.1;Parent=gene-C9E96_RS07070;Dbxref=GenBank:WP_079841770.1;Name=WP_079841770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460055.1;locus_tag=C9E96_RS07070;product=YbhB/YbcL family Raf kinase inhibitor-like protein;protein_id=WP_079841770.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	12757	13968	.	+	.	ID=gene-C9E96_RS07075;Name=rlmI;gbkey=Gene;gene=rlmI;gene_biotype=protein_coding;locus_tag=C9E96_RS07075;old_locus_tag=C9E96_07250
NZ_PYJX01000082.1	Protein Homology	CDS	12757	13968	.	+	0	ID=cds-WP_135494024.1;Parent=gene-C9E96_RS07075;Dbxref=GenBank:WP_135494024.1;Name=WP_135494024.1;Ontology_term=GO:0003723,GO:0008649;gbkey=CDS;gene=rlmI;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460054.1;locus_tag=C9E96_RS07075;product=23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;protein_id=WP_135494024.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	14026	14343	.	+	.	ID=gene-C9E96_RS07080;Name=hspQ;gbkey=Gene;gene=hspQ;gene_biotype=protein_coding;locus_tag=C9E96_RS07080;old_locus_tag=C9E96_07255
NZ_PYJX01000082.1	Protein Homology	CDS	14026	14343	.	+	0	ID=cds-WP_000561983.1;Parent=gene-C9E96_RS07080;Dbxref=GenBank:WP_000561983.1;Name=WP_000561983.1;gbkey=CDS;gene=hspQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123508.1;locus_tag=C9E96_RS07080;product=heat shock protein HspQ;protein_id=WP_000561983.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	14388	14801	.	-	.	ID=gene-C9E96_RS07085;Name=C9E96_RS07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07085;old_locus_tag=C9E96_07260
NZ_PYJX01000082.1	Protein Homology	CDS	14388	14801	.	-	0	ID=cds-WP_001537782.1;Parent=gene-C9E96_RS07085;Dbxref=GenBank:WP_001537782.1;Name=WP_001537782.1;Ontology_term=GO:0120225;gbkey=CDS;go_function=coenzyme A binding|0120225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309076.1;locus_tag=C9E96_RS07085;product=CoA-binding protein;protein_id=WP_001537782.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	14975	15637	.	+	.	ID=gene-C9E96_RS07090;Name=C9E96_RS07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07090;old_locus_tag=C9E96_07265
NZ_PYJX01000082.1	Protein Homology	CDS	14975	15637	.	+	0	ID=cds-WP_000847719.1;Parent=gene-C9E96_RS07090;Dbxref=GenBank:WP_000847719.1;Name=WP_000847719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460051.1;locus_tag=C9E96_RS07090;product=DUF2057 family protein;protein_id=WP_000847719.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	15732	16190	.	+	.	ID=gene-C9E96_RS07095;Name=mgsA;gbkey=Gene;gene=mgsA;gene_biotype=protein_coding;locus_tag=C9E96_RS07095;old_locus_tag=C9E96_07270
NZ_PYJX01000082.1	Protein Homology	CDS	15732	16190	.	+	0	ID=cds-WP_000424187.1;Parent=gene-C9E96_RS07095;Dbxref=GenBank:WP_000424187.1;Name=WP_000424187.1;Ontology_term=GO:0006007,GO:0019242,GO:0008929;gbkey=CDS;gene=mgsA;go_function=methylglyoxal synthase activity|0008929||IEA;go_process=glucose catabolic process|0006007||IEA,methylglyoxal biosynthetic process|0019242||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460050.1;locus_tag=C9E96_RS07095;product=methylglyoxal synthase;protein_id=WP_000424187.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	16226	18280	.	-	.	ID=gene-C9E96_RS07100;Name=helD;gbkey=Gene;gene=helD;gene_biotype=protein_coding;locus_tag=C9E96_RS07100;old_locus_tag=C9E96_07275
NZ_PYJX01000082.1	Protein Homology	CDS	16226	18280	.	-	0	ID=cds-WP_001524469.1;Parent=gene-C9E96_RS07100;Dbxref=GenBank:WP_001524469.1;Name=WP_001524469.1;Ontology_term=GO:0003677,GO:0003678,GO:0005524;gbkey=CDS;gene=helD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460049.1;locus_tag=C9E96_RS07100;product=DNA helicase IV;protein_id=WP_001524469.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	18404	18850	.	+	.	ID=gene-C9E96_RS07105;Name=C9E96_RS07105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07105;old_locus_tag=C9E96_07280
NZ_PYJX01000082.1	Protein Homology	CDS	18404	18850	.	+	0	ID=cds-WP_001261222.1;Parent=gene-C9E96_RS07105;Dbxref=GenBank:WP_001261222.1;Name=WP_001261222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460048.1;locus_tag=C9E96_RS07105;product=YccF domain-containing protein;protein_id=WP_001261222.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	18869	21022	.	+	.	ID=gene-C9E96_RS07110;Name=yccS;gbkey=Gene;gene=yccS;gene_biotype=protein_coding;locus_tag=C9E96_RS07110;old_locus_tag=C9E96_07285
NZ_PYJX01000082.1	Protein Homology	CDS	18869	21022	.	+	0	ID=cds-WP_135494026.1;Parent=gene-C9E96_RS07110;Dbxref=GenBank:WP_135494026.1;Name=WP_135494026.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yccS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460047.1;locus_tag=C9E96_RS07110;product=YccS family putative transporter;protein_id=WP_135494026.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	21009	21614	.	-	.	ID=gene-C9E96_RS07115;Name=C9E96_RS07115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07115;old_locus_tag=C9E96_07290
NZ_PYJX01000082.1	Protein Homology	CDS	21009	21614	.	-	0	ID=cds-WP_001202375.1;Parent=gene-C9E96_RS07115;Dbxref=GenBank:WP_001202375.1;Name=WP_001202375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460046.1;locus_tag=C9E96_RS07115;product=TfoX/Sxy family DNA transformation protein;protein_id=WP_001202375.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	21831	22340	.	+	.	ID=gene-C9E96_RS07120;Name=sulA;gbkey=Gene;gene=sulA;gene_biotype=protein_coding;locus_tag=C9E96_RS07120;old_locus_tag=C9E96_07295
NZ_PYJX01000082.1	Protein Homology	CDS	21831	22340	.	+	0	ID=cds-WP_000288732.1;Parent=gene-C9E96_RS07120;Dbxref=GenBank:WP_000288732.1;Name=WP_000288732.1;Ontology_term=GO:0009432,GO:0051782,GO:0005515;gbkey=CDS;gene=sulA;go_function=protein binding|0005515||IEA;go_process=SOS response|0009432||IEA,negative regulation of cell division|0051782||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460045.1;locus_tag=C9E96_RS07120;product=SOS-induced cell division inhibitor SulA;protein_id=WP_000288732.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	22697	23749	.	+	.	ID=gene-C9E96_RS07125;Name=ompA;gbkey=Gene;gene=ompA;gene_biotype=protein_coding;locus_tag=C9E96_RS07125;old_locus_tag=C9E96_07300
NZ_PYJX01000082.1	Protein Homology	CDS	22697	23749	.	+	0	ID=cds-WP_001670727.1;Parent=gene-C9E96_RS07125;Dbxref=GenBank:WP_001670727.1;Name=WP_001670727.1;gbkey=CDS;gene=ompA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460044.1;locus_tag=C9E96_RS07125;product=porin OmpA;protein_id=WP_001670727.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	23821	24273	.	-	.	ID=gene-C9E96_RS07130;Name=matP;gbkey=Gene;gene=matP;gene_biotype=protein_coding;locus_tag=C9E96_RS07130;old_locus_tag=C9E96_07305
NZ_PYJX01000082.1	Protein Homology	CDS	23821	24273	.	-	0	ID=cds-WP_000877172.1;Parent=gene-C9E96_RS07130;Dbxref=GenBank:WP_000877172.1;Name=WP_000877172.1;Ontology_term=GO:0006355,GO:0043565;gbkey=CDS;gene=matP;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460043.1;locus_tag=C9E96_RS07130;product=macrodomain Ter protein MatP;protein_id=WP_000877172.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	24459	26219	.	+	.	ID=gene-C9E96_RS07135;Name=C9E96_RS07135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07135;old_locus_tag=C9E96_07310
NZ_PYJX01000082.1	Protein Homology	CDS	24459	26219	.	+	0	ID=cds-WP_135494028.1;Parent=gene-C9E96_RS07135;Dbxref=GenBank:WP_135494028.1;Name=WP_135494028.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460042.1;locus_tag=C9E96_RS07135;product=AAA family ATPase;protein_id=WP_135494028.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	26288	26806	.	+	.	ID=gene-C9E96_RS07140;Name=fabA;gbkey=Gene;gene=fabA;gene_biotype=protein_coding;locus_tag=C9E96_RS07140;old_locus_tag=C9E96_07315
NZ_PYJX01000082.1	Protein Homology	CDS	26288	26806	.	+	0	ID=cds-WP_000227928.1;Parent=gene-C9E96_RS07140;Dbxref=GenBank:WP_000227928.1;Name=WP_000227928.1;Ontology_term=GO:0006633,GO:0019171;gbkey=CDS;gene=fabA;go_function=(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|0019171||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014915875.1;locus_tag=C9E96_RS07140;product=bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase;protein_id=WP_000227928.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	26906	27073	.	-	.	ID=gene-C9E96_RS07145;Name=rmf;gbkey=Gene;gene=rmf;gene_biotype=protein_coding;locus_tag=C9E96_RS07145;old_locus_tag=C9E96_07320
NZ_PYJX01000082.1	Protein Homology	CDS	26906	27073	.	-	0	ID=cds-WP_001537784.1;Parent=gene-C9E96_RS07145;Dbxref=GenBank:WP_001537784.1;Name=WP_001537784.1;Ontology_term=GO:0141014,GO:0043022;gbkey=CDS;gene=rmf;go_function=ribosome binding|0043022||IEA;go_process=ribosome hibernation|0141014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460040.1;locus_tag=C9E96_RS07145;product=ribosome modulation factor;protein_id=WP_001537784.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	27329	27892	.	-	.	ID=gene-C9E96_RS07150;Name=pqiC;gbkey=Gene;gene=pqiC;gene_biotype=protein_coding;locus_tag=C9E96_RS07150;old_locus_tag=C9E96_07325
NZ_PYJX01000082.1	Protein Homology	CDS	27329	27892	.	-	0	ID=cds-WP_000759136.1;Parent=gene-C9E96_RS07150;Dbxref=GenBank:WP_000759136.1;Name=WP_000759136.1;gbkey=CDS;gene=pqiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460039.1;locus_tag=C9E96_RS07150;product=membrane integrity-associated transporter subunit PqiC;protein_id=WP_000759136.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	27889	29529	.	-	.	ID=gene-C9E96_RS07155;Name=pqiB;gbkey=Gene;gene=pqiB;gene_biotype=protein_coding;locus_tag=C9E96_RS07155;old_locus_tag=C9E96_07330
NZ_PYJX01000082.1	Protein Homology	CDS	27889	29529	.	-	0	ID=cds-WP_000433416.1;Parent=gene-C9E96_RS07155;Dbxref=GenBank:WP_000433416.1;Name=WP_000433416.1;gbkey=CDS;gene=pqiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460038.1;locus_tag=C9E96_RS07155;product=intermembrane transport protein PqiB;protein_id=WP_000433416.1;transl_table=11
NZ_PYJX01000082.1	RefSeq	gene	29534	30482	.	-	.	ID=gene-C9E96_RS07160;Name=pqiA;end_range=30482,.;gbkey=Gene;gene=pqiA;gene_biotype=protein_coding;locus_tag=C9E96_RS07160;old_locus_tag=C9E96_07335;partial=true
NZ_PYJX01000082.1	Protein Homology	CDS	29534	30482	.	-	1	ID=cds-WP_135494030.1;Parent=gene-C9E96_RS07160;Dbxref=GenBank:WP_135494030.1;Name=WP_135494030.1;end_range=30482,.;gbkey=CDS;gene=pqiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460037.1;locus_tag=C9E96_RS07160;partial=true;product=membrane integrity-associated transporter subunit PqiA;protein_id=WP_135494030.1;transl_table=11
##sequence-region NZ_PYJX01000091.1 1 29738
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000091.1	RefSeq	region	1	29738	.	+	.	ID=NZ_PYJX01000091.1:1..29738;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000091.1	RefSeq	gene	1	729	.	-	.	ID=gene-C9E96_RS08100;Name=C9E96_RS08100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08100;old_locus_tag=C9E96_08295;partial=true;start_range=.,1
NZ_PYJX01000091.1	Protein Homology	CDS	1	729	.	-	0	ID=cds-WP_135494078.1;Parent=gene-C9E96_RS08100;Dbxref=GenBank:WP_135494078.1;Name=WP_135494078.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461303.1;locus_tag=C9E96_RS08100;partial=true;product=sigma 54-interacting transcriptional regulator;protein_id=WP_135494078.1;start_range=.,1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	940	2337	.	+	.	ID=gene-C9E96_RS08105;Name=C9E96_RS08105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08105;old_locus_tag=C9E96_08300
NZ_PYJX01000091.1	Protein Homology	CDS	940	2337	.	+	0	ID=cds-WP_000132306.1;Parent=gene-C9E96_RS08105;Dbxref=GenBank:WP_000132306.1;Name=WP_000132306.1;Ontology_term=GO:0016831,GO:0030170;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461302.1;locus_tag=C9E96_RS08105;product=diaminopimelate decarboxylase family protein;protein_id=WP_000132306.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	2428	3849	.	+	.	ID=gene-C9E96_RS08110;Name=C9E96_RS08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08110;old_locus_tag=C9E96_08305
NZ_PYJX01000091.1	Protein Homology	CDS	2428	3849	.	+	0	ID=cds-WP_000072512.1;Parent=gene-C9E96_RS08110;Dbxref=GenBank:WP_000072512.1;Name=WP_000072512.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461301.1;locus_tag=C9E96_RS08110;product=APC family permease;protein_id=WP_000072512.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	3851	4954	.	+	.	ID=gene-C9E96_RS08115;Name=C9E96_RS08115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08115;old_locus_tag=C9E96_08310
NZ_PYJX01000091.1	Protein Homology	CDS	3851	4954	.	+	0	ID=cds-WP_079787149.1;Parent=gene-C9E96_RS08115;Dbxref=GenBank:WP_079787149.1;Name=WP_079787149.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461300.1;locus_tag=C9E96_RS08115;product=alanine/ornithine racemase family PLP-dependent enzyme;protein_id=WP_079787149.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	5018	6424	.	+	.	ID=gene-C9E96_RS08120;Name=C9E96_RS08120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08120;old_locus_tag=C9E96_08315
NZ_PYJX01000091.1	Protein Homology	CDS	5018	6424	.	+	0	ID=cds-WP_000380346.1;Parent=gene-C9E96_RS08120;Dbxref=GenBank:WP_000380346.1;Name=WP_000380346.1;Ontology_term=GO:0003333,GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transmembrane transport|0003333||IEA,amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461299.1;locus_tag=C9E96_RS08120;product=amino acid permease;protein_id=WP_000380346.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	6451	7020	.	+	.	ID=gene-C9E96_RS08125;Name=C9E96_RS08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08125;old_locus_tag=C9E96_08320
NZ_PYJX01000091.1	Protein Homology	CDS	6451	7020	.	+	0	ID=cds-WP_000825683.1;Parent=gene-C9E96_RS08125;Dbxref=GenBank:WP_000825683.1;Name=WP_000825683.1;Ontology_term=GO:0010181,GO:0016831,GO:0106141;gbkey=CDS;go_function=FMN binding|0010181||IEA,carboxy-lyase activity|0016831||IEA,flavin prenyltransferase activity|0106141||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461298.1;locus_tag=C9E96_RS08125;product=UbiX family flavin prenyltransferase;protein_id=WP_000825683.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	7309	8091	.	+	.	ID=gene-C9E96_RS08135;Name=argT;gbkey=Gene;gene=argT;gene_biotype=protein_coding;locus_tag=C9E96_RS08135;old_locus_tag=C9E96_08330
NZ_PYJX01000091.1	Protein Homology	CDS	7309	8091	.	+	0	ID=cds-WP_000754423.1;Parent=gene-C9E96_RS08135;Dbxref=GenBank:WP_000754423.1;Name=WP_000754423.1;gbkey=CDS;gene=argT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461297.1;locus_tag=C9E96_RS08135;product=lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT;protein_id=WP_000754423.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	8329	9111	.	+	.	ID=gene-C9E96_RS08140;Name=hisJ;gbkey=Gene;gene=hisJ;gene_biotype=protein_coding;locus_tag=C9E96_RS08140;old_locus_tag=C9E96_08335
NZ_PYJX01000091.1	Protein Homology	CDS	8329	9111	.	+	0	ID=cds-WP_000731865.1;Parent=gene-C9E96_RS08140;Dbxref=GenBank:WP_000731865.1;Name=WP_000731865.1;gbkey=CDS;gene=hisJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461296.1;locus_tag=C9E96_RS08140;product=histidine ABC transporter substrate-binding protein HisJ;protein_id=WP_000731865.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	9292	9978	.	+	.	ID=gene-C9E96_RS08145;Name=C9E96_RS08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08145;old_locus_tag=C9E96_08340
NZ_PYJX01000091.1	Protein Homology	CDS	9292	9978	.	+	0	ID=cds-WP_000965498.1;Parent=gene-C9E96_RS08145;Dbxref=GenBank:WP_000965498.1;Name=WP_000965498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012124147.1;locus_tag=C9E96_RS08145;product=histidine ABC transporter permease HisQ;protein_id=WP_000965498.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	9975	10682	.	+	.	ID=gene-C9E96_RS08150;Name=hisM;gbkey=Gene;gene=hisM;gene_biotype=protein_coding;locus_tag=C9E96_RS08150;old_locus_tag=C9E96_08345
NZ_PYJX01000091.1	Protein Homology	CDS	9975	10682	.	+	0	ID=cds-WP_000569771.1;Parent=gene-C9E96_RS08150;Dbxref=GenBank:WP_000569771.1;Name=WP_000569771.1;gbkey=CDS;gene=hisM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461294.1;locus_tag=C9E96_RS08150;product=histidine ABC transporter permease HisM;protein_id=WP_000569771.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	10696	11469	.	+	.	ID=gene-C9E96_RS08155;Name=hisP;gbkey=Gene;gene=hisP;gene_biotype=protein_coding;locus_tag=C9E96_RS08155;old_locus_tag=C9E96_08350
NZ_PYJX01000091.1	Protein Homology	CDS	10696	11469	.	+	0	ID=cds-WP_131040926.1;Parent=gene-C9E96_RS08155;Dbxref=GenBank:WP_131040926.1;Name=WP_131040926.1;gbkey=CDS;gene=hisP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311217.1;locus_tag=C9E96_RS08155;product=histidine ABC transporter ATP-binding protein HisP;protein_id=WP_131040926.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	11521	12414	.	-	.	ID=gene-C9E96_RS08160;Name=C9E96_RS08160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08160;old_locus_tag=C9E96_08355
NZ_PYJX01000091.1	Protein Homology	CDS	11521	12414	.	-	0	ID=cds-WP_001166274.1;Parent=gene-C9E96_RS08160;Dbxref=GenBank:WP_001166274.1;Name=WP_001166274.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461292.1;locus_tag=C9E96_RS08160;product=TIGR01777 family oxidoreductase;protein_id=WP_001166274.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	12540	13187	.	-	.	ID=gene-C9E96_RS08165;Name=yfcG;gbkey=Gene;gene=yfcG;gene_biotype=protein_coding;locus_tag=C9E96_RS08165;old_locus_tag=C9E96_08360
NZ_PYJX01000091.1	Protein Homology	CDS	12540	13187	.	-	0	ID=cds-WP_000566563.1;Parent=gene-C9E96_RS08165;Dbxref=GenBank:WP_000566563.1;Name=WP_000566563.1;gbkey=CDS;gene=yfcG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461291.1;locus_tag=C9E96_RS08165;product=GSH-dependent disulfide bond oxidoreductase;protein_id=WP_000566563.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	13330	13974	.	+	.	ID=gene-C9E96_RS08170;Name=yfcF;gbkey=Gene;gene=yfcF;gene_biotype=protein_coding;locus_tag=C9E96_RS08170;old_locus_tag=C9E96_08365
NZ_PYJX01000091.1	Protein Homology	CDS	13330	13974	.	+	0	ID=cds-WP_000043012.1;Parent=gene-C9E96_RS08170;Dbxref=GenBank:WP_000043012.1;Name=WP_000043012.1;Ontology_term=GO:0006749;gbkey=CDS;gene=yfcF;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461290.1;locus_tag=C9E96_RS08170;product=glutathione transferase;protein_id=WP_000043012.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	14030	14581	.	+	.	ID=gene-C9E96_RS08175;Name=yfcE;gbkey=Gene;gene=yfcE;gene_biotype=protein_coding;locus_tag=C9E96_RS08175;old_locus_tag=C9E96_08370
NZ_PYJX01000091.1	Protein Homology	CDS	14030	14581	.	+	0	ID=cds-WP_000772458.1;Parent=gene-C9E96_RS08175;Dbxref=GenBank:WP_000772458.1;Name=WP_000772458.1;gbkey=CDS;gene=yfcE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461289.1;locus_tag=C9E96_RS08175;product=phosphodiesterase;protein_id=WP_000772458.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	14638	15192	.	+	.	ID=gene-C9E96_RS08180;Name=yfcD;gbkey=Gene;gene=yfcD;gene_biotype=protein_coding;locus_tag=C9E96_RS08180;old_locus_tag=C9E96_08375
NZ_PYJX01000091.1	Protein Homology	CDS	14638	15192	.	+	0	ID=cds-WP_023994401.1;Parent=gene-C9E96_RS08180;Dbxref=GenBank:WP_023994401.1;Name=WP_023994401.1;Ontology_term=GO:0016817;gbkey=CDS;gene=yfcD;go_function=hydrolase activity%2C acting on acid anhydrides|0016817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461288.1;locus_tag=C9E96_RS08180;product=NUDIX hydrolase YfcD;protein_id=WP_023994401.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	15198	16217	.	-	.	ID=gene-C9E96_RS08185;Name=C9E96_RS08185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08185;old_locus_tag=C9E96_08380
NZ_PYJX01000091.1	Protein Homology	CDS	15198	16217	.	-	0	ID=cds-WP_000026949.1;Parent=gene-C9E96_RS08185;Dbxref=GenBank:WP_000026949.1;Name=WP_000026949.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461287.1;locus_tag=C9E96_RS08185;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000026949.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	16470	16913	.	+	.	ID=gene-C9E96_RS08195;Name=C9E96_RS08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08195;old_locus_tag=C9E96_08390
NZ_PYJX01000091.1	Protein Homology	CDS	16470	16913	.	+	0	ID=cds-WP_000901809.1;Parent=gene-C9E96_RS08195;Dbxref=GenBank:WP_000901809.1;Name=WP_000901809.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461286.1;locus_tag=C9E96_RS08195;product=PTS sugar transporter subunit IIA;protein_id=WP_000901809.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	16994	17266	.	+	.	ID=gene-C9E96_RS08200;Name=C9E96_RS08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08200;old_locus_tag=C9E96_08395
NZ_PYJX01000091.1	Protein Homology	CDS	16994	17266	.	+	0	ID=cds-WP_000699818.1;Parent=gene-C9E96_RS08200;Dbxref=GenBank:WP_000699818.1;Name=WP_000699818.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461285.1;locus_tag=C9E96_RS08200;product=PTS sugar transporter subunit IIB;protein_id=WP_000699818.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	17287	18678	.	+	.	ID=gene-C9E96_RS08205;Name=C9E96_RS08205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08205;old_locus_tag=C9E96_08400
NZ_PYJX01000091.1	Protein Homology	CDS	17287	18678	.	+	0	ID=cds-WP_001522266.1;Parent=gene-C9E96_RS08205;Dbxref=GenBank:WP_001522266.1;Name=WP_001522266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461284.3;locus_tag=C9E96_RS08205;product=PTS ascorbate transporter subunit IIC;protein_id=WP_001522266.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	18675	19505	.	+	.	ID=gene-C9E96_RS08210;Name=C9E96_RS08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08210;old_locus_tag=C9E96_08405
NZ_PYJX01000091.1	Protein Homology	CDS	18675	19505	.	+	0	ID=cds-WP_001103265.1;Parent=gene-C9E96_RS08210;Dbxref=GenBank:WP_001103265.1;Name=WP_001103265.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461283.1;locus_tag=C9E96_RS08210;product=transketolase;protein_id=WP_001103265.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	19498	20451	.	+	.	ID=gene-C9E96_RS08215;Name=C9E96_RS08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08215;old_locus_tag=C9E96_08410
NZ_PYJX01000091.1	Protein Homology	CDS	19498	20451	.	+	0	ID=cds-WP_000593024.1;Parent=gene-C9E96_RS08215;Dbxref=GenBank:WP_000593024.1;Name=WP_000593024.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461282.1;locus_tag=C9E96_RS08215;product=transketolase family protein;protein_id=WP_000593024.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	20500	22020	.	-	.	ID=gene-C9E96_RS08220;Name=yfcC;gbkey=Gene;gene=yfcC;gene_biotype=protein_coding;locus_tag=C9E96_RS08220;old_locus_tag=C9E96_08415
NZ_PYJX01000091.1	Protein Homology	CDS	20500	22020	.	-	0	ID=cds-WP_000117931.1;Parent=gene-C9E96_RS08220;Dbxref=GenBank:WP_000117931.1;Name=WP_000117931.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yfcC;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461281.1;locus_tag=C9E96_RS08220;product=putative basic amino acid antiporter YfcC;protein_id=WP_000117931.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	22238	24382	.	-	.	ID=gene-C9E96_RS08225;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=C9E96_RS08225;old_locus_tag=C9E96_08420
NZ_PYJX01000091.1	Protein Homology	CDS	22238	24382	.	-	0	ID=cds-WP_000086692.1;Parent=gene-C9E96_RS08225;Dbxref=GenBank:WP_000086692.1;Name=WP_000086692.1;Ontology_term=GO:0016407;gbkey=CDS;gene=pta;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461280.1;locus_tag=C9E96_RS08225;product=phosphate acetyltransferase;protein_id=WP_000086692.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	24459	25661	.	-	.	ID=gene-C9E96_RS08230;Name=ackA;gbkey=Gene;gene=ackA;gene_biotype=protein_coding;locus_tag=C9E96_RS08230;old_locus_tag=C9E96_08425
NZ_PYJX01000091.1	Protein Homology	CDS	24459	25661	.	-	0	ID=cds-WP_000095689.1;Parent=gene-C9E96_RS08230;Dbxref=GenBank:WP_000095689.1;Name=WP_000095689.1;gbkey=CDS;gene=ackA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129491.1;locus_tag=C9E96_RS08230;product=acetate kinase;protein_id=WP_000095689.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	26000	26455	.	+	.	ID=gene-C9E96_RS08240;Name=yfbV;gbkey=Gene;gene=yfbV;gene_biotype=protein_coding;locus_tag=C9E96_RS08240;old_locus_tag=C9E96_08430
NZ_PYJX01000091.1	Protein Homology	CDS	26000	26455	.	+	0	ID=cds-WP_000106617.1;Parent=gene-C9E96_RS08240;Dbxref=GenBank:WP_000106617.1;Name=WP_000106617.1;gbkey=CDS;gene=yfbV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129545.1;locus_tag=C9E96_RS08240;product=terminus macrodomain insulation protein YfbV;protein_id=WP_000106617.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	26538	27032	.	+	.	ID=gene-C9E96_RS08245;Name=C9E96_RS08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08245;old_locus_tag=C9E96_08435
NZ_PYJX01000091.1	Protein Homology	CDS	26538	27032	.	+	0	ID=cds-WP_000426135.1;Parent=gene-C9E96_RS08245;Dbxref=GenBank:WP_000426135.1;Name=WP_000426135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007371080.1;locus_tag=C9E96_RS08245;product=YfbU family protein;protein_id=WP_000426135.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	27025	27702	.	+	.	ID=gene-C9E96_RS08250;Name=C9E96_RS08250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08250;old_locus_tag=C9E96_08440
NZ_PYJX01000091.1	Protein Homology	CDS	27025	27702	.	+	0	ID=cds-WP_014343872.1;Parent=gene-C9E96_RS08250;Dbxref=GenBank:WP_014343872.1;Name=WP_014343872.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461276.3;locus_tag=C9E96_RS08250;product=sugar phosphatase;protein_id=WP_014343872.1;transl_table=11
NZ_PYJX01000091.1	RefSeq	gene	27779	29605	.	+	.	ID=gene-C9E96_RS08255;Name=C9E96_RS08255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08255;old_locus_tag=C9E96_08445
NZ_PYJX01000091.1	Protein Homology	CDS	27779	29605	.	+	0	ID=cds-WP_001012856.1;Parent=gene-C9E96_RS08255;Dbxref=GenBank:WP_001012856.1;Name=WP_001012856.1;Ontology_term=GO:0008324;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461275.1;locus_tag=C9E96_RS08255;product=SLC13 family permease;protein_id=WP_001012856.1;transl_table=11
##sequence-region NZ_PYJX01000216.1 1 29709
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000216.1	RefSeq	region	1	29709	.	+	.	ID=NZ_PYJX01000216.1:1..29709;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000216.1	RefSeq	gene	1	1284	.	-	.	ID=gene-C9E96_RS21450;Name=C9E96_RS21450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21450;old_locus_tag=C9E96_21975;partial=true;start_range=.,1
NZ_PYJX01000216.1	Protein Homology	CDS	1	1284	.	-	0	ID=cds-WP_135494601.1;Parent=gene-C9E96_RS21450;Dbxref=GenBank:WP_135494601.1;Name=WP_135494601.1;Ontology_term=GO:0019062,GO:0046718;gbkey=CDS;go_process=virion attachment to host cell|0019062||IEA,symbiont entry into host cell|0046718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000368198.1;locus_tag=C9E96_RS21450;partial=true;product=tail fiber protein;protein_id=WP_135494601.1;start_range=.,1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	1287	1919	.	-	.	ID=gene-C9E96_RS21455;Name=C9E96_RS21455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21455;old_locus_tag=C9E96_21980
NZ_PYJX01000216.1	Protein Homology	CDS	1287	1919	.	-	0	ID=cds-WP_023993553.1;Parent=gene-C9E96_RS21455;Dbxref=GenBank:WP_023993553.1;Name=WP_023993553.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463066.1;locus_tag=C9E96_RS21455;product=phage tail protein I;protein_id=WP_023993553.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	1912	3027	.	-	.	ID=gene-C9E96_RS21460;Name=C9E96_RS21460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21460;old_locus_tag=C9E96_21985
NZ_PYJX01000216.1	Protein Homology	CDS	1912	3027	.	-	0	ID=cds-WP_023993552.1;Parent=gene-C9E96_RS21460;Dbxref=GenBank:WP_023993552.1;Name=WP_023993552.1;Ontology_term=GO:0098045,GO:0098025;gbkey=CDS;go_component=virus tail%2C baseplate|0098025||IEA;go_process=virus baseplate assembly|0098045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463067.1;locus_tag=C9E96_RS21460;product=baseplate assembly protein;protein_id=WP_023993552.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	3018	3377	.	-	.	ID=gene-C9E96_RS21465;Name=C9E96_RS21465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21465;old_locus_tag=C9E96_21990
NZ_PYJX01000216.1	Protein Homology	CDS	3018	3377	.	-	0	ID=cds-WP_001093501.1;Parent=gene-C9E96_RS21465;Dbxref=GenBank:WP_001093501.1;Name=WP_001093501.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463068.1;locus_tag=C9E96_RS21465;product=GPW/gp25 family protein;protein_id=WP_001093501.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	3541	5088	.	-	.	ID=gene-C9E96_RS21470;Name=C9E96_RS21470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21470;old_locus_tag=C9E96_21995
NZ_PYJX01000216.1	Protein Homology	CDS	3541	5088	.	-	0	ID=cds-WP_000632048.1;Parent=gene-C9E96_RS21470;Dbxref=GenBank:WP_000632048.1;Name=WP_000632048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463069.1;locus_tag=C9E96_RS21470;product=DUF6056 family protein;protein_id=WP_000632048.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	5088	6017	.	-	.	ID=gene-C9E96_RS21475;Name=C9E96_RS21475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21475;old_locus_tag=C9E96_22000
NZ_PYJX01000216.1	Protein Homology	CDS	5088	6017	.	-	0	ID=cds-WP_000703634.1;Parent=gene-C9E96_RS21475;Dbxref=GenBank:WP_000703634.1;Name=WP_000703634.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463070.1;locus_tag=C9E96_RS21475;product=glycosyltransferase family 2 protein;protein_id=WP_000703634.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	6014	6376	.	-	.	ID=gene-C9E96_RS21480;Name=C9E96_RS21480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21480;old_locus_tag=C9E96_22005
NZ_PYJX01000216.1	Protein Homology	CDS	6014	6376	.	-	0	ID=cds-WP_000593182.1;Parent=gene-C9E96_RS21480;Dbxref=GenBank:WP_000593182.1;Name=WP_000593182.1;Ontology_term=GO:0000271,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463071.1;locus_tag=C9E96_RS21480;product=GtrA family protein;protein_id=WP_000593182.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	6704	7426	.	-	.	ID=gene-C9E96_RS21485;Name=C9E96_RS21485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21485;old_locus_tag=C9E96_22010
NZ_PYJX01000216.1	Protein Homology	CDS	6704	7426	.	-	0	ID=cds-WP_050068050.1;Parent=gene-C9E96_RS21485;Dbxref=GenBank:WP_050068050.1;Name=WP_050068050.1;Ontology_term=GO:0098003,GO:0046872,GO:0098025;gbkey=CDS;go_component=virus tail%2C baseplate|0098025||IEA;go_function=metal ion binding|0046872||IEA;go_process=viral tail assembly|0098003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463072.1;locus_tag=C9E96_RS21485;product=phage baseplate assembly protein V;protein_id=WP_050068050.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	7436	8479	.	-	.	ID=gene-C9E96_RS21490;Name=C9E96_RS21490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21490;old_locus_tag=C9E96_22015
NZ_PYJX01000216.1	Protein Homology	CDS	7436	8479	.	-	0	ID=cds-WP_080203651.1;Parent=gene-C9E96_RS21490;Dbxref=GenBank:WP_080203651.1;Name=WP_080203651.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463073.1;locus_tag=C9E96_RS21490;product=phage late control D family protein;protein_id=WP_080203651.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	8467	8676	.	-	.	ID=gene-C9E96_RS21495;Name=C9E96_RS21495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21495;old_locus_tag=C9E96_22020
NZ_PYJX01000216.1	Protein Homology	CDS	8467	8676	.	-	0	ID=cds-WP_023993551.1;Parent=gene-C9E96_RS21495;Dbxref=GenBank:WP_023993551.1;Name=WP_023993551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463074.1;locus_tag=C9E96_RS21495;product=tail protein X;protein_id=WP_023993551.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	8676	9629	.	-	.	ID=gene-C9E96_RS21500;Name=C9E96_RS21500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21500;old_locus_tag=C9E96_22025
NZ_PYJX01000216.1	Protein Homology	CDS	8676	9629	.	-	0	ID=cds-WP_000271425.1;Parent=gene-C9E96_RS21500;Dbxref=GenBank:WP_000271425.1;Name=WP_000271425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463075.1;locus_tag=C9E96_RS21500;product=phage tail protein;protein_id=WP_000271425.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	9629	11983	.	-	.	ID=gene-C9E96_RS21505;Name=C9E96_RS21505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21505;old_locus_tag=C9E96_22030
NZ_PYJX01000216.1	Protein Homology	CDS	9629	11983	.	-	0	ID=cds-WP_135494604.1;Parent=gene-C9E96_RS21505;Dbxref=GenBank:WP_135494604.1;Name=WP_135494604.1;Ontology_term=GO:0098003;gbkey=CDS;go_process=viral tail assembly|0098003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463076.1;locus_tag=C9E96_RS21505;product=phage tail tape measure protein;protein_id=WP_135494604.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	12080	12208	.	-	.	ID=gene-C9E96_RS24455;Name=C9E96_RS24455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24455;old_locus_tag=C9E96_22035
NZ_PYJX01000216.1	Protein Homology	CDS	12080	12208	.	-	0	ID=cds-WP_001728452.1;Parent=gene-C9E96_RS24455;Dbxref=GenBank:WP_001728452.1;Name=WP_001728452.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001728452.1;locus_tag=C9E96_RS24455;product=GpE family phage tail protein;protein_id=WP_001728452.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	12168	12485	.	-	.	ID=gene-C9E96_RS21515;Name=C9E96_RS21515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21515;old_locus_tag=C9E96_22040
NZ_PYJX01000216.1	Protein Homology	CDS	12168	12485	.	-	0	ID=cds-WP_001003638.1;Parent=gene-C9E96_RS21515;Dbxref=GenBank:WP_001003638.1;Name=WP_001003638.1;Ontology_term=GO:0098003;gbkey=CDS;go_process=viral tail assembly|0098003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001003637.1;locus_tag=C9E96_RS21515;product=phage tail assembly protein;protein_id=WP_001003638.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	12537	13061	.	-	.	ID=gene-C9E96_RS21520;Name=C9E96_RS21520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21520;old_locus_tag=C9E96_22045
NZ_PYJX01000216.1	Protein Homology	CDS	12537	13061	.	-	0	ID=cds-WP_000907495.1;Parent=gene-C9E96_RS21520;Dbxref=GenBank:WP_000907495.1;Name=WP_000907495.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463077.1;locus_tag=C9E96_RS21520;product=phage major tail tube protein;protein_id=WP_000907495.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	13061	14488	.	-	.	ID=gene-C9E96_RS21525;Name=C9E96_RS21525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21525;old_locus_tag=C9E96_22050
NZ_PYJX01000216.1	Protein Homology	CDS	13061	14488	.	-	0	ID=cds-WP_031606104.1;Parent=gene-C9E96_RS21525;Dbxref=GenBank:WP_031606104.1;Name=WP_031606104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463078.1;locus_tag=C9E96_RS21525;product=phage tail sheath subtilisin-like domain-containing protein;protein_id=WP_031606104.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	14478	14675	.	-	.	ID=gene-C9E96_RS21530;Name=C9E96_RS21530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21530;old_locus_tag=C9E96_22055
NZ_PYJX01000216.1	Protein Homology	CDS	14478	14675	.	-	0	ID=cds-WP_000875313.1;Parent=gene-C9E96_RS21530;Dbxref=GenBank:WP_000875313.1;Name=WP_000875313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463079.1;locus_tag=C9E96_RS21530;product=hypothetical protein;protein_id=WP_000875313.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	14672	15127	.	-	.	ID=gene-C9E96_RS21535;Name=C9E96_RS21535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21535;old_locus_tag=C9E96_22060
NZ_PYJX01000216.1	Protein Homology	CDS	14672	15127	.	-	0	ID=cds-WP_080203652.1;Parent=gene-C9E96_RS21535;Dbxref=GenBank:WP_080203652.1;Name=WP_080203652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463080.1;locus_tag=C9E96_RS21535;product=Gp37 family protein;protein_id=WP_080203652.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	15287	15601	.	-	.	ID=gene-C9E96_RS21540;Name=C9E96_RS21540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21540;old_locus_tag=C9E96_22065
NZ_PYJX01000216.1	Protein Homology	CDS	15287	15601	.	-	0	ID=cds-WP_000777266.1;Parent=gene-C9E96_RS21540;Dbxref=GenBank:WP_000777266.1;Name=WP_000777266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463081.1;locus_tag=C9E96_RS21540;product=membrane protein;protein_id=WP_000777266.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	15614	16219	.	-	.	ID=gene-C9E96_RS21545;Name=C9E96_RS21545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21545;old_locus_tag=C9E96_22070
NZ_PYJX01000216.1	Protein Homology	CDS	15614	16219	.	-	0	ID=cds-WP_080203653.1;Parent=gene-C9E96_RS21545;Dbxref=GenBank:WP_080203653.1;Name=WP_080203653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463082.1;locus_tag=C9E96_RS21545;product=lytic transglycosylase domain-containing protein;protein_id=WP_080203653.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	16222	16509	.	-	.	ID=gene-C9E96_RS21550;Name=C9E96_RS21550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21550;old_locus_tag=C9E96_22075
NZ_PYJX01000216.1	Protein Homology	CDS	16222	16509	.	-	0	ID=cds-WP_001226439.1;Parent=gene-C9E96_RS21550;Dbxref=GenBank:WP_001226439.1;Name=WP_001226439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463083.1;locus_tag=C9E96_RS21550;product=putative holin;protein_id=WP_001226439.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	17086	17433	.	+	.	ID=gene-C9E96_RS21555;Name=C9E96_RS21555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21555;old_locus_tag=C9E96_22080
NZ_PYJX01000216.1	Protein Homology	CDS	17086	17433	.	+	0	ID=cds-WP_000615248.1;Parent=gene-C9E96_RS21555;Dbxref=GenBank:WP_000615248.1;Name=WP_000615248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000615246.1;locus_tag=C9E96_RS21555;product=Mor transcription activator family protein;protein_id=WP_000615248.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	17564	18913	.	-	.	ID=gene-C9E96_RS21560;Name=lysC;gbkey=Gene;gene=lysC;gene_biotype=protein_coding;locus_tag=C9E96_RS21560;old_locus_tag=C9E96_22085
NZ_PYJX01000216.1	Protein Homology	CDS	17564	18913	.	-	0	ID=cds-WP_000136394.1;Parent=gene-C9E96_RS21560;Dbxref=GenBank:WP_000136394.1;Name=WP_000136394.1;Ontology_term=GO:0009089,GO:0004072;gbkey=CDS;gene=lysC;go_function=aspartate kinase activity|0004072||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463085.1;locus_tag=C9E96_RS21560;product=lysine-sensitive aspartokinase 3;protein_id=WP_000136394.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	19258	20907	.	+	.	ID=gene-C9E96_RS21565;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=C9E96_RS21565;old_locus_tag=C9E96_22090
NZ_PYJX01000216.1	Protein Homology	CDS	19258	20907	.	+	0	ID=cds-WP_080203654.1;Parent=gene-C9E96_RS21565;Dbxref=GenBank:WP_080203654.1;Name=WP_080203654.1;Ontology_term=GO:0006094,GO:0006096,GO:0004347;gbkey=CDS;gene=pgi;go_function=glucose-6-phosphate isomerase activity|0004347||IEA;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463086.1;locus_tag=C9E96_RS21565;product=glucose-6-phosphate isomerase;protein_id=WP_080203654.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	21351	21593	.	+	.	ID=gene-C9E96_RS21570;Name=yjbE;gbkey=Gene;gene=yjbE;gene_biotype=protein_coding;locus_tag=C9E96_RS21570;old_locus_tag=C9E96_22095
NZ_PYJX01000216.1	Protein Homology	CDS	21351	21593	.	+	0	ID=cds-WP_001541297.1;Parent=gene-C9E96_RS21570;Dbxref=GenBank:WP_001541297.1;Name=WP_001541297.1;gbkey=CDS;gene=yjbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313036.1;locus_tag=C9E96_RS21570;product=exopolysaccharide production protein YjbE;protein_id=WP_001541297.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	21657	22295	.	+	.	ID=gene-C9E96_RS21575;Name=C9E96_RS21575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21575;old_locus_tag=C9E96_22100
NZ_PYJX01000216.1	Protein Homology	CDS	21657	22295	.	+	0	ID=cds-WP_000824800.1;Parent=gene-C9E96_RS21575;Dbxref=GenBank:WP_000824800.1;Name=WP_000824800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000824802.1;locus_tag=C9E96_RS21575;product=YjbF family lipoprotein;protein_id=WP_000824800.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	22292	23026	.	+	.	ID=gene-C9E96_RS21580;Name=C9E96_RS21580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21580;old_locus_tag=C9E96_22105
NZ_PYJX01000216.1	Protein Homology	CDS	22292	23026	.	+	0	ID=cds-WP_080203655.1;Parent=gene-C9E96_RS21580;Dbxref=GenBank:WP_080203655.1;Name=WP_080203655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463089.1;locus_tag=C9E96_RS21580;product=capsule biosynthesis GfcC family protein;protein_id=WP_080203655.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	23026	25122	.	+	.	ID=gene-C9E96_RS21585;Name=C9E96_RS21585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21585;old_locus_tag=C9E96_22110
NZ_PYJX01000216.1	Protein Homology	CDS	23026	25122	.	+	0	ID=cds-WP_080203656.1;Parent=gene-C9E96_RS21585;Dbxref=GenBank:WP_080203656.1;Name=WP_080203656.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463090.1;locus_tag=C9E96_RS21585;product=YjbH domain-containing protein;protein_id=WP_080203656.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	25265	25675	.	+	.	ID=gene-C9E96_RS21590;Name=psiE;gbkey=Gene;gene=psiE;gene_biotype=protein_coding;locus_tag=C9E96_RS21590;old_locus_tag=C9E96_22115
NZ_PYJX01000216.1	Protein Homology	CDS	25265	25675	.	+	0	ID=cds-WP_000982749.1;Parent=gene-C9E96_RS21590;Dbxref=GenBank:WP_000982749.1;Name=WP_000982749.1;gbkey=CDS;gene=psiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463091.1;locus_tag=C9E96_RS21590;product=phosphate-starvation-inducible protein PsiE;protein_id=WP_000982749.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	25841	26731	.	-	.	ID=gene-C9E96_RS21595;Name=malG;gbkey=Gene;gene=malG;gene_biotype=protein_coding;locus_tag=C9E96_RS21595;old_locus_tag=C9E96_22120
NZ_PYJX01000216.1	Protein Homology	CDS	25841	26731	.	-	0	ID=cds-WP_001252081.1;Parent=gene-C9E96_RS21595;Dbxref=GenBank:WP_001252081.1;Name=WP_001252081.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=malG;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463092.1;locus_tag=C9E96_RS21595;product=maltose ABC transporter permease MalG;protein_id=WP_001252081.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	26746	28290	.	-	.	ID=gene-C9E96_RS21600;Name=malF;gbkey=Gene;gene=malF;gene_biotype=protein_coding;locus_tag=C9E96_RS21600;old_locus_tag=C9E96_22125
NZ_PYJX01000216.1	Protein Homology	CDS	26746	28290	.	-	0	ID=cds-WP_000382570.1;Parent=gene-C9E96_RS21600;Dbxref=GenBank:WP_000382570.1;Name=WP_000382570.1;Ontology_term=GO:0055085,GO:0043190;gbkey=CDS;gene=malF;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463093.1;locus_tag=C9E96_RS21600;product=maltose ABC transporter permease MalF;protein_id=WP_000382570.1;transl_table=11
NZ_PYJX01000216.1	RefSeq	gene	28422	29612	.	-	.	ID=gene-C9E96_RS21605;Name=malE;gbkey=Gene;gene=malE;gene_biotype=protein_coding;locus_tag=C9E96_RS21605;old_locus_tag=C9E96_22130
NZ_PYJX01000216.1	Protein Homology	CDS	28422	29612	.	-	0	ID=cds-WP_000695415.1;Parent=gene-C9E96_RS21605;Dbxref=GenBank:WP_000695415.1;Name=WP_000695415.1;Ontology_term=GO:0008643,GO:0055085,GO:0015144;gbkey=CDS;gene=malE;go_function=carbohydrate transmembrane transporter activity|0015144||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000695396.1;locus_tag=C9E96_RS21605;product=maltose/maltodextrin ABC transporter substrate-binding protein MalE;protein_id=WP_000695415.1;transl_table=11
##sequence-region NZ_PYJX01000190.1 1 100903
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000190.1	RefSeq	region	1	100903	.	+	.	ID=NZ_PYJX01000190.1:1..100903;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000190.1	RefSeq	gene	1	906	.	-	.	ID=gene-C9E96_RS18820;Name=aroH;gbkey=Gene;gene=aroH;gene_biotype=protein_coding;locus_tag=C9E96_RS18820;old_locus_tag=C9E96_19320;partial=true;start_range=.,1
NZ_PYJX01000190.1	Protein Homology	CDS	1	906	.	-	0	ID=cds-WP_135494492.1;Parent=gene-C9E96_RS18820;Dbxref=GenBank:WP_135494492.1;Name=WP_135494492.1;gbkey=CDS;gene=aroH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460313.1;locus_tag=C9E96_RS18820;partial=true;product=3-deoxy-7-phosphoheptulonate synthase AroH;protein_id=WP_135494492.1;start_range=.,1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	1062	1895	.	-	.	ID=gene-C9E96_RS18825;Name=ppsR;gbkey=Gene;gene=ppsR;gene_biotype=protein_coding;locus_tag=C9E96_RS18825;old_locus_tag=C9E96_19325
NZ_PYJX01000190.1	Protein Homology	CDS	1062	1895	.	-	0	ID=cds-WP_000370992.1;Parent=gene-C9E96_RS18825;Dbxref=GenBank:WP_000370992.1;Name=WP_000370992.1;Ontology_term=GO:0004674,GO:0005524,GO:0016776,GO:0043531;gbkey=CDS;gene=ppsR;go_function=protein serine/threonine kinase activity|0004674||IEA,ATP binding|0005524||IEA,phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA,ADP binding|0043531||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460314.1;locus_tag=C9E96_RS18825;product=posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR;protein_id=WP_000370992.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	2232	4610	.	+	.	ID=gene-C9E96_RS18830;Name=ppsA;gbkey=Gene;gene=ppsA;gene_biotype=protein_coding;locus_tag=C9E96_RS18830;old_locus_tag=C9E96_19330
NZ_PYJX01000190.1	Protein Homology	CDS	2232	4610	.	+	0	ID=cds-WP_135494494.1;Parent=gene-C9E96_RS18830;Dbxref=GenBank:WP_135494494.1;Name=WP_135494494.1;Ontology_term=GO:0006090,GO:0016310,GO:0005524,GO:0008986,GO:0016772;gbkey=CDS;gene=ppsA;go_function=ATP binding|0005524||IEA,pyruvate%2C water dikinase activity|0008986||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=pyruvate metabolic process|0006090||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460315.1;locus_tag=C9E96_RS18830;product=phosphoenolpyruvate synthase;protein_id=WP_135494494.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	4652	6292	.	-	.	ID=gene-C9E96_RS18835;Name=fadK;gbkey=Gene;gene=fadK;gene_biotype=protein_coding;locus_tag=C9E96_RS18835;old_locus_tag=C9E96_19335
NZ_PYJX01000190.1	Protein Homology	CDS	4652	6292	.	-	0	ID=cds-WP_000117492.1;Parent=gene-C9E96_RS18835;Dbxref=GenBank:WP_000117492.1;Name=WP_000117492.1;gbkey=CDS;gene=fadK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460316.1;locus_tag=C9E96_RS18835;product=medium-chain fatty-acid--CoA ligase;protein_id=WP_000117492.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	6530	6823	.	-	.	ID=gene-C9E96_RS18840;Name=C9E96_RS18840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18840;old_locus_tag=C9E96_19340
NZ_PYJX01000190.1	Protein Homology	CDS	6530	6823	.	-	0	ID=cds-WP_000093364.1;Parent=gene-C9E96_RS18840;Dbxref=GenBank:WP_000093364.1;Name=WP_000093364.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460317.1;locus_tag=C9E96_RS18840;product=ferredoxin family protein;protein_id=WP_000093364.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	6820	8106	.	-	.	ID=gene-C9E96_RS18845;Name=C9E96_RS18845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18845;old_locus_tag=C9E96_19345
NZ_PYJX01000190.1	Protein Homology	CDS	6820	8106	.	-	0	ID=cds-WP_001278555.1;Parent=gene-C9E96_RS18845;Dbxref=GenBank:WP_001278555.1;Name=WP_001278555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460318.1;locus_tag=C9E96_RS18845;product=FAD-dependent oxidoreductase;protein_id=WP_001278555.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	8163	9098	.	-	.	ID=gene-C9E96_RS18850;Name=C9E96_RS18850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18850;old_locus_tag=C9E96_19350
NZ_PYJX01000190.1	Protein Homology	CDS	8163	9098	.	-	0	ID=cds-WP_001015885.1;Parent=gene-C9E96_RS18850;Dbxref=GenBank:WP_001015885.1;Name=WP_001015885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460319.1;locus_tag=C9E96_RS18850;product=electron transfer flavoprotein subunit alpha;protein_id=WP_001015885.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	9120	9884	.	-	.	ID=gene-C9E96_RS18855;Name=C9E96_RS18855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18855;old_locus_tag=C9E96_19355
NZ_PYJX01000190.1	Protein Homology	CDS	9120	9884	.	-	0	ID=cds-WP_000692095.1;Parent=gene-C9E96_RS18855;Dbxref=GenBank:WP_000692095.1;Name=WP_000692095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460320.1;locus_tag=C9E96_RS18855;product=electron transfer flavoprotein;protein_id=WP_000692095.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	10347	11237	.	+	.	ID=gene-C9E96_RS18860;Name=C9E96_RS18860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18860;old_locus_tag=C9E96_19360
NZ_PYJX01000190.1	Protein Homology	CDS	10347	11237	.	+	0	ID=cds-WP_000284832.1;Parent=gene-C9E96_RS18860;Dbxref=GenBank:WP_000284832.1;Name=WP_000284832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460321.1;locus_tag=C9E96_RS18860;product=AraC family transcriptional regulator;protein_id=WP_000284832.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	11313	12464	.	-	.	ID=gene-C9E96_RS18865;Name=C9E96_RS18865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18865;old_locus_tag=C9E96_19365
NZ_PYJX01000190.1	Protein Homology	CDS	11313	12464	.	-	0	ID=cds-WP_080203840.1;Parent=gene-C9E96_RS18865;Dbxref=GenBank:WP_080203840.1;Name=WP_080203840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460322.1;locus_tag=C9E96_RS18865;product=acyl-CoA dehydrogenase;protein_id=WP_080203840.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	12478	14073	.	-	.	ID=gene-C9E96_RS18870;Name=C9E96_RS18870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18870;old_locus_tag=C9E96_19370
NZ_PYJX01000190.1	Protein Homology	CDS	12478	14073	.	-	0	ID=cds-WP_000700599.1;Parent=gene-C9E96_RS18870;Dbxref=GenBank:WP_000700599.1;Name=WP_000700599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416209.1;locus_tag=C9E96_RS18870;product=acyl CoA:acetate/3-ketoacid CoA transferase;protein_id=WP_000700599.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	14227	14985	.	-	.	ID=gene-C9E96_RS18875;Name=aroD;gbkey=Gene;gene=aroD;gene_biotype=protein_coding;locus_tag=C9E96_RS18875;old_locus_tag=C9E96_19375
NZ_PYJX01000190.1	Protein Homology	CDS	14227	14985	.	-	0	ID=cds-WP_000860221.1;Parent=gene-C9E96_RS18875;Dbxref=GenBank:WP_000860221.1;Name=WP_000860221.1;Ontology_term=GO:0009423,GO:0003855;gbkey=CDS;gene=aroD;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460324.1;locus_tag=C9E96_RS18875;product=type I 3-dehydroquinate dehydratase;protein_id=WP_000860221.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	15030	15896	.	-	.	ID=gene-C9E96_RS18880;Name=ydiB;gbkey=Gene;gene=ydiB;gene_biotype=protein_coding;locus_tag=C9E96_RS18880;old_locus_tag=C9E96_19380
NZ_PYJX01000190.1	Protein Homology	CDS	15030	15896	.	-	0	ID=cds-WP_000383488.1;Parent=gene-C9E96_RS18880;Dbxref=GenBank:WP_000383488.1;Name=WP_000383488.1;gbkey=CDS;gene=ydiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460325.1;locus_tag=C9E96_RS18880;product=quinate/shikimate dehydrogenase;protein_id=WP_000383488.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	15963	17198	.	-	.	ID=gene-C9E96_RS18885;Name=C9E96_RS18885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18885;old_locus_tag=C9E96_19385
NZ_PYJX01000190.1	Protein Homology	CDS	15963	17198	.	-	0	ID=cds-WP_000081207.1;Parent=gene-C9E96_RS18885;Dbxref=GenBank:WP_000081207.1;Name=WP_000081207.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460326.1;locus_tag=C9E96_RS18885;product=MFS transporter;protein_id=WP_000081207.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	17562	18773	.	-	.	ID=gene-C9E96_RS18890;Name=C9E96_RS18890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18890;old_locus_tag=C9E96_19390
NZ_PYJX01000190.1	Protein Homology	CDS	17562	18773	.	-	0	ID=cds-WP_000797669.1;Parent=gene-C9E96_RS18890;Dbxref=GenBank:WP_000797669.1;Name=WP_000797669.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460327.1;locus_tag=C9E96_RS18890;product=MFS transporter;protein_id=WP_000797669.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	18914	19273	.	-	.	ID=gene-C9E96_RS18895;Name=C9E96_RS18895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18895;old_locus_tag=C9E96_19395
NZ_PYJX01000190.1	Protein Homology	CDS	18914	19273	.	-	0	ID=cds-WP_000980454.1;Parent=gene-C9E96_RS18895;Dbxref=GenBank:WP_000980454.1;Name=WP_000980454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460328.1;locus_tag=C9E96_RS18895;product=YdiL family protein;protein_id=WP_000980454.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	19441	19548	.	-	.	ID=gene-C9E96_RS18900;Name=rprA;gbkey=Gene;gene=rprA;gene_biotype=antisense_RNA;locus_tag=C9E96_RS18900;old_locus_tag=C9E96_19400
NZ_PYJX01000190.1	cmsearch	antisense_RNA	19441	19548	.	-	.	ID=rna-C9E96_RS18900;Parent=gene-C9E96_RS18900;Dbxref=RFAM:RF00034;gbkey=ncRNA;gene=rprA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS18900;product=antisense sRNA RprA
NZ_PYJX01000190.1	cmsearch	exon	19441	19548	.	-	.	ID=exon-C9E96_RS18900-1;Parent=rna-C9E96_RS18900;Dbxref=RFAM:RF00034;gbkey=ncRNA;gene=rprA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS18900;product=antisense sRNA RprA
NZ_PYJX01000190.1	RefSeq	gene	19731	20849	.	-	.	ID=gene-C9E96_RS18905;Name=ydiK;gbkey=Gene;gene=ydiK;gene_biotype=protein_coding;locus_tag=C9E96_RS18905;old_locus_tag=C9E96_19405
NZ_PYJX01000190.1	Protein Homology	CDS	19731	20849	.	-	0	ID=cds-WP_000248615.1;Parent=gene-C9E96_RS18905;Dbxref=GenBank:WP_000248615.1;Name=WP_000248615.1;gbkey=CDS;gene=ydiK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460329.1;locus_tag=C9E96_RS18905;product=AI-2E family transporter YdiK;protein_id=WP_000248615.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	21114	24170	.	+	.	ID=gene-C9E96_RS18910;Name=ydiJ;gbkey=Gene;gene=ydiJ;gene_biotype=protein_coding;locus_tag=C9E96_RS18910;old_locus_tag=C9E96_19410
NZ_PYJX01000190.1	Protein Homology	CDS	21114	24170	.	+	0	ID=cds-WP_135494496.1;Parent=gene-C9E96_RS18910;Dbxref=GenBank:WP_135494496.1;Name=WP_135494496.1;Ontology_term=GO:1903457,GO:0008720,GO:0046872;gbkey=CDS;gene=ydiJ;go_function=D-lactate dehydrogenase activity|0008720||IEA,metal ion binding|0046872||IEA;go_process=lactate catabolic process|1903457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460330.1;locus_tag=C9E96_RS18910;product=D-2-hydroxyglutarate dehydrogenase YdiJ;protein_id=WP_135494496.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	24167	24577	.	+	.	ID=gene-C9E96_RS18915;Name=menI;gbkey=Gene;gene=menI;gene_biotype=protein_coding;locus_tag=C9E96_RS18915;old_locus_tag=C9E96_19415
NZ_PYJX01000190.1	Protein Homology	CDS	24167	24577	.	+	0	ID=cds-WP_000637927.1;Parent=gene-C9E96_RS18915;Dbxref=GenBank:WP_000637927.1;Name=WP_000637927.1;gbkey=CDS;gene=menI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460331.1;locus_tag=C9E96_RS18915;product=1%2C4-dihydroxy-2-naphthoyl-CoA hydrolase;protein_id=WP_000637927.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	24676	24864	.	+	.	ID=gene-C9E96_RS18920;Name=C9E96_RS18920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18920;old_locus_tag=C9E96_19420
NZ_PYJX01000190.1	Protein Homology	CDS	24676	24864	.	+	0	ID=cds-WP_001537749.1;Parent=gene-C9E96_RS18920;Dbxref=GenBank:WP_001537749.1;Name=WP_001537749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416200.2;locus_tag=C9E96_RS18920;product=YdiH family protein;protein_id=WP_001537749.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	25152	26498	.	-	.	ID=gene-C9E96_RS18925;Name=C9E96_RS18925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18925;old_locus_tag=C9E96_19425
NZ_PYJX01000190.1	Protein Homology	CDS	25152	26498	.	-	0	ID=cds-WP_023993757.1;Parent=gene-C9E96_RS18925;Dbxref=GenBank:WP_023993757.1;Name=WP_023993757.1;Ontology_term=GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460333.1;locus_tag=C9E96_RS18925;product=L-cystine transporter;protein_id=WP_023993757.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	26925	27293	.	+	.	ID=gene-C9E96_RS18930;Name=sufA;gbkey=Gene;gene=sufA;gene_biotype=protein_coding;locus_tag=C9E96_RS18930;old_locus_tag=C9E96_19430
NZ_PYJX01000190.1	Protein Homology	CDS	26925	27293	.	+	0	ID=cds-WP_000418969.1;Parent=gene-C9E96_RS18930;Dbxref=GenBank:WP_000418969.1;Name=WP_000418969.1;gbkey=CDS;gene=sufA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460334.1;locus_tag=C9E96_RS18930;product=Fe-S cluster assembly scaffold SufA;protein_id=WP_000418969.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	27302	28789	.	+	.	ID=gene-C9E96_RS18935;Name=sufB;gbkey=Gene;gene=sufB;gene_biotype=protein_coding;locus_tag=C9E96_RS18935;old_locus_tag=C9E96_19435
NZ_PYJX01000190.1	Protein Homology	CDS	27302	28789	.	+	0	ID=cds-WP_135494498.1;Parent=gene-C9E96_RS18935;Dbxref=GenBank:WP_135494498.1;Name=WP_135494498.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufB;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460335.1;locus_tag=C9E96_RS18935;product=Fe-S cluster assembly protein SufB;protein_id=WP_135494498.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	28806	29552	.	+	.	ID=gene-C9E96_RS18940;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=C9E96_RS18940;old_locus_tag=C9E96_19440
NZ_PYJX01000190.1	Protein Homology	CDS	28806	29552	.	+	0	ID=cds-WP_000948902.1;Parent=gene-C9E96_RS18940;Dbxref=GenBank:WP_000948902.1;Name=WP_000948902.1;Ontology_term=GO:0005524;gbkey=CDS;gene=sufC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008500629.1;locus_tag=C9E96_RS18940;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_000948902.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	29527	30798	.	+	.	ID=gene-C9E96_RS18945;Name=sufD;gbkey=Gene;gene=sufD;gene_biotype=protein_coding;locus_tag=C9E96_RS18945;old_locus_tag=C9E96_19445
NZ_PYJX01000190.1	Protein Homology	CDS	29527	30798	.	+	0	ID=cds-WP_058113680.1;Parent=gene-C9E96_RS18945;Dbxref=GenBank:WP_058113680.1;Name=WP_058113680.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufD;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460337.1;locus_tag=C9E96_RS18945;product=Fe-S cluster assembly protein SufD;protein_id=WP_058113680.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	30795	32015	.	+	.	ID=gene-C9E96_RS18950;Name=sufS;gbkey=Gene;gene=sufS;gene_biotype=protein_coding;locus_tag=C9E96_RS18950;old_locus_tag=C9E96_19450
NZ_PYJX01000190.1	Protein Homology	CDS	30795	32015	.	+	0	ID=cds-WP_080203841.1;Parent=gene-C9E96_RS18950;Dbxref=GenBank:WP_080203841.1;Name=WP_080203841.1;Ontology_term=GO:0006534,GO:0030170,GO:0031071;gbkey=CDS;gene=sufS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=cysteine metabolic process|0006534||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460338.1;locus_tag=C9E96_RS18950;product=cysteine desulfurase SufS;protein_id=WP_080203841.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	32028	32444	.	+	.	ID=gene-C9E96_RS18955;Name=sufE;gbkey=Gene;gene=sufE;gene_biotype=protein_coding;locus_tag=C9E96_RS18955;old_locus_tag=C9E96_19455
NZ_PYJX01000190.1	Protein Homology	CDS	32028	32444	.	+	0	ID=cds-WP_000729470.1;Parent=gene-C9E96_RS18955;Dbxref=GenBank:WP_000729470.1;Name=WP_000729470.1;gbkey=CDS;gene=sufE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460339.1;locus_tag=C9E96_RS18955;product=cysteine desulfuration protein SufE;protein_id=WP_000729470.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	32599	33600	.	+	.	ID=gene-C9E96_RS18960;Name=ldtE;gbkey=Gene;gene=ldtE;gene_biotype=protein_coding;locus_tag=C9E96_RS18960;old_locus_tag=C9E96_19460
NZ_PYJX01000190.1	Protein Homology	CDS	32599	33600	.	+	0	ID=cds-WP_080203842.1;Parent=gene-C9E96_RS18960;Dbxref=GenBank:WP_080203842.1;Name=WP_080203842.1;Ontology_term=GO:0009252,GO:0018104,GO:0016757,GO:0071972;gbkey=CDS;gene=ldtE;go_function=glycosyltransferase activity|0016757||IEA,peptidoglycan L%2CD-transpeptidase activity|0071972||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,peptidoglycan-protein cross-linking|0018104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460340.1;locus_tag=C9E96_RS18960;product=L%2CD-transpeptidase LdtE;protein_id=WP_080203842.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	33667	33903	.	-	.	ID=gene-C9E96_RS18965;Name=lpp;gbkey=Gene;gene=lpp;gene_biotype=protein_coding;locus_tag=C9E96_RS18965;old_locus_tag=C9E96_19465
NZ_PYJX01000190.1	Protein Homology	CDS	33667	33903	.	-	0	ID=cds-WP_001082307.1;Parent=gene-C9E96_RS18965;Dbxref=GenBank:WP_001082307.1;Name=WP_001082307.1;gbkey=CDS;gene=lpp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460342.1;locus_tag=C9E96_RS18965;product=murein lipoprotein Lpp;protein_id=WP_001082307.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	34214	35626	.	-	.	ID=gene-C9E96_RS18970;Name=pykF;gbkey=Gene;gene=pykF;gene_biotype=protein_coding;locus_tag=C9E96_RS18970;old_locus_tag=C9E96_19470
NZ_PYJX01000190.1	Protein Homology	CDS	34214	35626	.	-	0	ID=cds-WP_000751444.1;Parent=gene-C9E96_RS18970;Dbxref=GenBank:WP_000751444.1;Name=WP_000751444.1;Ontology_term=GO:0006096,GO:0004743;gbkey=CDS;gene=pykF;go_function=pyruvate kinase activity|0004743||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010346010.1;locus_tag=C9E96_RS18970;product=pyruvate kinase PykF;protein_id=WP_000751444.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	35634	35864	.	-	.	ID=gene-C9E96_RS24570;Name=C9E96_RS24570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24570
NZ_PYJX01000190.1	Protein Homology	CDS	35634	35864	.	-	0	ID=cds-WP_418143684.1;Parent=gene-C9E96_RS24570;Dbxref=GenBank:WP_418143684.1;Name=WP_418143684.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049534.1;locus_tag=C9E96_RS24570;product=hypothetical protein;protein_id=WP_418143684.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	36028	37371	.	-	.	ID=gene-C9E96_RS18975;Name=C9E96_RS18975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18975;old_locus_tag=C9E96_19480
NZ_PYJX01000190.1	Protein Homology	CDS	36028	37371	.	-	0	ID=cds-WP_000756089.1;Parent=gene-C9E96_RS18975;Dbxref=GenBank:WP_000756089.1;Name=WP_000756089.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460344.1;locus_tag=C9E96_RS18975;product=APC family permease;protein_id=WP_000756089.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	37393	38286	.	-	.	ID=gene-C9E96_RS18980;Name=C9E96_RS18980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18980;old_locus_tag=C9E96_19485
NZ_PYJX01000190.1	Protein Homology	CDS	37393	38286	.	-	0	ID=cds-WP_001000503.1;Parent=gene-C9E96_RS18980;Dbxref=GenBank:WP_001000503.1;Name=WP_001000503.1;Ontology_term=GO:0006508,GO:0008233;gbkey=CDS;go_function=peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460345.1;locus_tag=C9E96_RS18980;product=proline iminopeptidase-family hydrolase;protein_id=WP_001000503.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	38345	39082	.	-	.	ID=gene-C9E96_RS18985;Name=C9E96_RS18985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18985;old_locus_tag=C9E96_19490
NZ_PYJX01000190.1	Protein Homology	CDS	38345	39082	.	-	0	ID=cds-WP_080203843.1;Parent=gene-C9E96_RS18985;Dbxref=GenBank:WP_080203843.1;Name=WP_080203843.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460346.1;locus_tag=C9E96_RS18985;product=glutamine amidotransferase;protein_id=WP_080203843.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	39094	40320	.	-	.	ID=gene-C9E96_RS18990;Name=C9E96_RS18990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18990;old_locus_tag=C9E96_19495
NZ_PYJX01000190.1	Protein Homology	CDS	39094	40320	.	-	0	ID=cds-WP_000471809.1;Parent=gene-C9E96_RS18990;Dbxref=GenBank:WP_000471809.1;Name=WP_000471809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460347.1;locus_tag=C9E96_RS18990;product=PfkB family carbohydrate kinase;protein_id=WP_000471809.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	40643	43705	.	-	.	ID=gene-C9E96_RS18995;Name=ttrA;gbkey=Gene;gene=ttrA;gene_biotype=protein_coding;locus_tag=C9E96_RS18995;old_locus_tag=C9E96_19500
NZ_PYJX01000190.1	Protein Homology	CDS	40643	43705	.	-	0	ID=cds-WP_135494500.1;Parent=gene-C9E96_RS18995;Dbxref=GenBank:WP_135494500.1;Name=WP_135494500.1;Ontology_term=GO:0016491,GO:0043546;gbkey=CDS;gene=ttrA;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460348.1;locus_tag=C9E96_RS18995;product=tetrathionate reductase subunit TtrA;protein_id=WP_135494500.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	43698	44720	.	-	.	ID=gene-C9E96_RS19000;Name=ttrC;gbkey=Gene;gene=ttrC;gene_biotype=protein_coding;locus_tag=C9E96_RS19000;old_locus_tag=C9E96_19505
NZ_PYJX01000190.1	Protein Homology	CDS	43698	44720	.	-	0	ID=cds-WP_063809082.1;Parent=gene-C9E96_RS19000;Dbxref=GenBank:WP_063809082.1;Name=WP_063809082.1;gbkey=CDS;gene=ttrC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460349.1;locus_tag=C9E96_RS19000;product=tetrathionate reductase subunit TtrC;protein_id=WP_063809082.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	44721	45455	.	-	.	ID=gene-C9E96_RS19005;Name=ttrB;gbkey=Gene;gene=ttrB;gene_biotype=protein_coding;locus_tag=C9E96_RS19005;old_locus_tag=C9E96_19510
NZ_PYJX01000190.1	Protein Homology	CDS	44721	45455	.	-	0	ID=cds-WP_001527654.1;Parent=gene-C9E96_RS19005;Dbxref=GenBank:WP_001527654.1;Name=WP_001527654.1;gbkey=CDS;gene=ttrB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001518945.1;locus_tag=C9E96_RS19005;product=tetrathionate reductase subunit TtrB;protein_id=WP_001527654.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	45637	47415	.	+	.	ID=gene-C9E96_RS19010;Name=ttrS;gbkey=Gene;gene=ttrS;gene_biotype=protein_coding;locus_tag=C9E96_RS19010;old_locus_tag=C9E96_19515
NZ_PYJX01000190.1	Protein Homology	CDS	45637	47415	.	+	0	ID=cds-WP_001214414.1;Parent=gene-C9E96_RS19010;Dbxref=GenBank:WP_001214414.1;Name=WP_001214414.1;gbkey=CDS;gene=ttrS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460351.1;locus_tag=C9E96_RS19010;product=tetrathionate respiration histidine kinase TtrS;protein_id=WP_001214414.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	47390	48010	.	+	.	ID=gene-C9E96_RS19015;Name=ttrR;gbkey=Gene;gene=ttrR;gene_biotype=protein_coding;locus_tag=C9E96_RS19015;old_locus_tag=C9E96_19520
NZ_PYJX01000190.1	Protein Homology	CDS	47390	48010	.	+	0	ID=cds-WP_000190927.1;Parent=gene-C9E96_RS19015;Dbxref=GenBank:WP_000190927.1;Name=WP_000190927.1;gbkey=CDS;gene=ttrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460352.3;locus_tag=C9E96_RS19015;product=tetrathionate respiration response regulator TtrR;protein_id=WP_000190927.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	48108	48320	.	+	.	ID=gene-C9E96_RS19020;Name=fumD;gbkey=Gene;gene=fumD;gene_biotype=protein_coding;locus_tag=C9E96_RS19020;old_locus_tag=C9E96_19525
NZ_PYJX01000190.1	Protein Homology	CDS	48108	48320	.	+	0	ID=cds-WP_000165779.1;Parent=gene-C9E96_RS19020;Dbxref=GenBank:WP_000165779.1;Name=WP_000165779.1;gbkey=CDS;gene=fumD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460353.1;locus_tag=C9E96_RS19020;product=fumarate hydratase FumD;protein_id=WP_000165779.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	48416	49375	.	-	.	ID=gene-C9E96_RS19025;Name=mlrB;gbkey=Gene;gene=mlrB;gene_biotype=protein_coding;locus_tag=C9E96_RS19025;old_locus_tag=C9E96_19530
NZ_PYJX01000190.1	Protein Homology	CDS	48416	49375	.	-	0	ID=cds-WP_001060729.1;Parent=gene-C9E96_RS19025;Dbxref=GenBank:WP_001060729.1;Name=WP_001060729.1;gbkey=CDS;gene=mlrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460354.1;locus_tag=C9E96_RS19025;product=transcriptional regulator MlrB;protein_id=WP_001060729.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	49548	50276	.	-	.	ID=gene-C9E96_RS19030;Name=C9E96_RS19030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19030;old_locus_tag=C9E96_19535
NZ_PYJX01000190.1	Protein Homology	CDS	49548	50276	.	-	0	ID=cds-WP_000122321.1;Parent=gene-C9E96_RS19030;Dbxref=GenBank:WP_000122321.1;Name=WP_000122321.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460355.1;locus_tag=C9E96_RS19030;product=MerR family transcriptional regulator;protein_id=WP_000122321.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	50455	51093	.	-	.	ID=gene-C9E96_RS19035;Name=C9E96_RS19035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19035;old_locus_tag=C9E96_19540
NZ_PYJX01000190.1	Protein Homology	CDS	50455	51093	.	-	0	ID=cds-WP_000666335.1;Parent=gene-C9E96_RS19035;Dbxref=GenBank:WP_000666335.1;Name=WP_000666335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460356.1;locus_tag=C9E96_RS19035;product=two component system response regulator;protein_id=WP_000666335.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	51124	53886	.	-	.	ID=gene-C9E96_RS19040;Name=C9E96_RS19040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19040;old_locus_tag=C9E96_19545
NZ_PYJX01000190.1	Protein Homology	CDS	51124	53886	.	-	0	ID=cds-WP_080203845.1;Parent=gene-C9E96_RS19040;Dbxref=GenBank:WP_080203845.1;Name=WP_080203845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460357.1;locus_tag=C9E96_RS19040;product=two component system sensor kinase;protein_id=WP_080203845.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	54287	54688	.	+	.	ID=gene-C9E96_RS19045;Name=spiC;gbkey=Gene;gene=spiC;gene_biotype=protein_coding;locus_tag=C9E96_RS19045;old_locus_tag=C9E96_19550
NZ_PYJX01000190.1	Protein Homology	CDS	54287	54688	.	+	0	ID=cds-WP_001738217.1;Parent=gene-C9E96_RS19045;Dbxref=GenBank:WP_001738217.1;Name=WP_001738217.1;gbkey=CDS;gene=spiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460358.1;locus_tag=C9E96_RS19045;product=SPI-2 type III secretion system protein SpiC;protein_id=WP_001738217.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	54690	56183	.	+	.	ID=gene-C9E96_RS19050;Name=spiA;gbkey=Gene;gene=spiA;gene_biotype=protein_coding;locus_tag=C9E96_RS19050;old_locus_tag=C9E96_19555
NZ_PYJX01000190.1	Protein Homology	CDS	54690	56183	.	+	0	ID=cds-WP_000261287.1;Parent=gene-C9E96_RS19050;Dbxref=GenBank:WP_000261287.1;Name=WP_000261287.1;gbkey=CDS;gene=spiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460359.1;locus_tag=C9E96_RS19050;product=SPI-2 type III secretion system protein SpiA;protein_id=WP_000261287.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	56164	57375	.	+	.	ID=gene-C9E96_RS19055;Name=ssaD;gbkey=Gene;gene=ssaD;gene_biotype=protein_coding;locus_tag=C9E96_RS19055;old_locus_tag=C9E96_19560
NZ_PYJX01000190.1	Protein Homology	CDS	56164	57375	.	+	0	ID=cds-WP_000323784.1;Parent=gene-C9E96_RS19055;Dbxref=GenBank:WP_000323784.1;Name=WP_000323784.1;gbkey=CDS;gene=ssaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460360.1;locus_tag=C9E96_RS19055;product=SctD family type III secretion system inner membrane ring subunit SsaD;protein_id=WP_000323784.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	57383	57625	.	+	.	ID=gene-C9E96_RS19060;Name=ssaE;gbkey=Gene;gene=ssaE;gene_biotype=protein_coding;locus_tag=C9E96_RS19060;old_locus_tag=C9E96_19565
NZ_PYJX01000190.1	Protein Homology	CDS	57383	57625	.	+	0	ID=cds-WP_000210204.1;Parent=gene-C9E96_RS19060;Dbxref=GenBank:WP_000210204.1;Name=WP_000210204.1;gbkey=CDS;gene=ssaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460361.1;locus_tag=C9E96_RS19060;product=YscE family type III secretion system co-chaperone SsaE;protein_id=WP_000210204.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	57889	58215	.	+	.	ID=gene-C9E96_RS19065;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=C9E96_RS19065;old_locus_tag=C9E96_19570
NZ_PYJX01000190.1	Protein Homology	CDS	57889	58215	.	+	0	ID=cds-WP_000972855.1;Parent=gene-C9E96_RS19065;Dbxref=GenBank:WP_000972855.1;Name=WP_000972855.1;gbkey=CDS;gene=sseA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460362.1;locus_tag=C9E96_RS19065;product=SPI-2 type III secretion system chaperone SseA;protein_id=WP_000972855.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	58222	58812	.	+	.	ID=gene-C9E96_RS19070;Name=sseB;gbkey=Gene;gene=sseB;gene_biotype=protein_coding;locus_tag=C9E96_RS19070;old_locus_tag=C9E96_19575
NZ_PYJX01000190.1	Protein Homology	CDS	58222	58812	.	+	0	ID=cds-WP_000094429.1;Parent=gene-C9E96_RS19070;Dbxref=GenBank:WP_000094429.1;Name=WP_000094429.1;gbkey=CDS;gene=sseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460363.1;locus_tag=C9E96_RS19070;product=SPI-2 type III secretion system translocon protein SseB;protein_id=WP_000094429.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	58809	59282	.	+	.	ID=gene-C9E96_RS19075;Name=sscA;gbkey=Gene;gene=sscA;gene_biotype=protein_coding;locus_tag=C9E96_RS19075;old_locus_tag=C9E96_19580
NZ_PYJX01000190.1	Protein Homology	CDS	58809	59282	.	+	0	ID=cds-WP_080203994.1;Parent=gene-C9E96_RS19075;Dbxref=GenBank:WP_080203994.1;Name=WP_080203994.1;gbkey=CDS;gene=sscA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460364.1;locus_tag=C9E96_RS19075;product=SycD/LcrH family type III secretion system chaperone SscA;protein_id=WP_080203994.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	59284	60738	.	+	.	ID=gene-C9E96_RS19080;Name=sseC;gbkey=Gene;gene=sseC;gene_biotype=protein_coding;locus_tag=C9E96_RS19080;old_locus_tag=C9E96_19585
NZ_PYJX01000190.1	Protein Homology	CDS	59284	60738	.	+	0	ID=cds-WP_080203993.1;Parent=gene-C9E96_RS19080;Dbxref=GenBank:WP_080203993.1;Name=WP_080203993.1;gbkey=CDS;gene=sseC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460365.1;locus_tag=C9E96_RS19080;product=SPI-2 type III secretion system translocon protein SseC;protein_id=WP_080203993.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	60754	61341	.	+	.	ID=gene-C9E96_RS19085;Name=sseD;gbkey=Gene;gene=sseD;gene_biotype=protein_coding;locus_tag=C9E96_RS19085;old_locus_tag=C9E96_19590
NZ_PYJX01000190.1	Protein Homology	CDS	60754	61341	.	+	0	ID=cds-WP_000388323.1;Parent=gene-C9E96_RS19085;Dbxref=GenBank:WP_000388323.1;Name=WP_000388323.1;gbkey=CDS;gene=sseD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460366.1;locus_tag=C9E96_RS19085;product=SPI-2 type III secretion system translocon protein SseD;protein_id=WP_000388323.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	61344	61760	.	+	.	ID=gene-C9E96_RS19090;Name=sseE;gbkey=Gene;gene=sseE;gene_biotype=protein_coding;locus_tag=C9E96_RS19090;old_locus_tag=C9E96_19595
NZ_PYJX01000190.1	Protein Homology	CDS	61344	61760	.	+	0	ID=cds-WP_000249605.1;Parent=gene-C9E96_RS19090;Dbxref=GenBank:WP_000249605.1;Name=WP_000249605.1;gbkey=CDS;gene=sseE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460367.1;locus_tag=C9E96_RS19090;product=LcrR family type III secretion system chaperone SseE;protein_id=WP_000249605.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	61812	62246	.	+	.	ID=gene-C9E96_RS19095;Name=sscB;gbkey=Gene;gene=sscB;gene_biotype=protein_coding;locus_tag=C9E96_RS19095;old_locus_tag=C9E96_19600
NZ_PYJX01000190.1	Protein Homology	CDS	61812	62246	.	+	0	ID=cds-WP_000979963.1;Parent=gene-C9E96_RS19095;Dbxref=GenBank:WP_000979963.1;Name=WP_000979963.1;gbkey=CDS;gene=sscB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460368.1;locus_tag=C9E96_RS19095;product=SycD/LcrH family type III secretion system chaperone SscB;protein_id=WP_000979963.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	62262	63044	.	+	.	ID=gene-C9E96_RS19100;Name=sseF;gbkey=Gene;gene=sseF;gene_biotype=protein_coding;locus_tag=C9E96_RS19100;old_locus_tag=C9E96_19605
NZ_PYJX01000190.1	Protein Homology	CDS	62262	63044	.	+	0	ID=cds-WP_135494502.1;Parent=gene-C9E96_RS19100;Dbxref=GenBank:WP_135494502.1;Name=WP_135494502.1;gbkey=CDS;gene=sseF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460369.1;locus_tag=C9E96_RS19100;product=type III secretion systems effector SseF;protein_id=WP_135494502.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	63041	63730	.	+	.	ID=gene-C9E96_RS19105;Name=sseG;gbkey=Gene;gene=sseG;gene_biotype=protein_coding;locus_tag=C9E96_RS19105;old_locus_tag=C9E96_19610
NZ_PYJX01000190.1	Protein Homology	CDS	63041	63730	.	+	0	ID=cds-WP_000805846.1;Parent=gene-C9E96_RS19105;Dbxref=GenBank:WP_000805846.1;Name=WP_000805846.1;Note=SseG%2C from Salmonella pathogenicity island 2%2C is a type III secretion system (T3SS) effector protein.;gbkey=CDS;gene=sseG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460370.1;locus_tag=C9E96_RS19105;product=pathogenicity island 2 effector protein SseG;protein_id=WP_000805846.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	63824	64039	.	+	.	ID=gene-C9E96_RS19110;Name=ssaG;gbkey=Gene;gene=ssaG;gene_biotype=protein_coding;locus_tag=C9E96_RS19110;old_locus_tag=C9E96_19615
NZ_PYJX01000190.1	Protein Homology	CDS	63824	64039	.	+	0	ID=cds-WP_000350226.1;Parent=gene-C9E96_RS19110;Dbxref=GenBank:WP_000350226.1;Name=WP_000350226.1;gbkey=CDS;gene=ssaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460371.1;locus_tag=C9E96_RS19110;product=type III secretion system needle filament protein SsaG;protein_id=WP_000350226.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	64017	64307	.	+	.	ID=gene-C9E96_RS19115;Name=C9E96_RS19115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19115;old_locus_tag=C9E96_19620
NZ_PYJX01000190.1	Protein Homology	CDS	64017	64307	.	+	0	ID=cds-WP_000444713.1;Parent=gene-C9E96_RS19115;Dbxref=GenBank:WP_000444713.1;Name=WP_000444713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001531123.1;locus_tag=C9E96_RS19115;product=EscG/YscG/SsaH family type III secretion system needle protein co-chaperone;protein_id=WP_000444713.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	64319	64567	.	+	.	ID=gene-C9E96_RS19120;Name=ssaI;gbkey=Gene;gene=ssaI;gene_biotype=protein_coding;locus_tag=C9E96_RS19120;old_locus_tag=C9E96_19625
NZ_PYJX01000190.1	Protein Homology	CDS	64319	64567	.	+	0	ID=cds-WP_001574409.1;Parent=gene-C9E96_RS19120;Dbxref=GenBank:WP_001574409.1;Name=WP_001574409.1;gbkey=CDS;gene=ssaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460373.1;locus_tag=C9E96_RS19120;product=SctI family type III secretion system inner rod subunit SsaI;protein_id=WP_001574409.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	64564	65313	.	+	.	ID=gene-C9E96_RS19125;Name=ssaJ;gbkey=Gene;gene=ssaJ;gene_biotype=protein_coding;locus_tag=C9E96_RS19125;old_locus_tag=C9E96_19630
NZ_PYJX01000190.1	Protein Homology	CDS	64564	65313	.	+	0	ID=cds-WP_000862878.1;Parent=gene-C9E96_RS19125;Dbxref=GenBank:WP_000862878.1;Name=WP_000862878.1;gbkey=CDS;gene=ssaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460374.1;locus_tag=C9E96_RS19125;product=SPI-2 type III secretion system apparatus lipoprotein SsaJ;protein_id=WP_000862878.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	65331	65879	.	+	.	ID=gene-C9E96_RS19130;Name=C9E96_RS19130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19130;old_locus_tag=C9E96_19635
NZ_PYJX01000190.1	Protein Homology	CDS	65331	65879	.	+	0	ID=cds-WP_001531605.1;Parent=gene-C9E96_RS19130;Dbxref=GenBank:WP_001531605.1;Name=WP_001531605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460375.1;locus_tag=C9E96_RS19130;product=type III secretion system domain-containing protein;protein_id=WP_001531605.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	65876	66550	.	+	.	ID=gene-C9E96_RS19135;Name=ssaK;gbkey=Gene;gene=ssaK;gene_biotype=protein_coding;locus_tag=C9E96_RS19135;old_locus_tag=C9E96_19640
NZ_PYJX01000190.1	Protein Homology	CDS	65876	66550	.	+	0	ID=cds-WP_000011203.1;Parent=gene-C9E96_RS19135;Dbxref=GenBank:WP_000011203.1;Name=WP_000011203.1;gbkey=CDS;gene=ssaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460376.1;locus_tag=C9E96_RS19135;product=SPI-2 type III secretion system apparatus protein SsaK;protein_id=WP_000011203.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	66516	67532	.	+	.	ID=gene-C9E96_RS19140;Name=ssaL;gbkey=Gene;gene=ssaL;gene_biotype=protein_coding;locus_tag=C9E96_RS19140;old_locus_tag=C9E96_19645
NZ_PYJX01000190.1	Protein Homology	CDS	66516	67532	.	+	0	ID=cds-WP_080203992.1;Parent=gene-C9E96_RS19140;Dbxref=GenBank:WP_080203992.1;Name=WP_080203992.1;gbkey=CDS;gene=ssaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460377.1;locus_tag=C9E96_RS19140;product=SPI-2 type III secretion system apparatus protein SsaL;protein_id=WP_080203992.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	67590	67958	.	+	.	ID=gene-C9E96_RS19145;Name=ssaM;gbkey=Gene;gene=ssaM;gene_biotype=protein_coding;locus_tag=C9E96_RS19145;old_locus_tag=C9E96_19650
NZ_PYJX01000190.1	Protein Homology	CDS	67590	67958	.	+	0	ID=cds-WP_000383702.1;Parent=gene-C9E96_RS19145;Dbxref=GenBank:WP_000383702.1;Name=WP_000383702.1;gbkey=CDS;gene=ssaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460378.1;locus_tag=C9E96_RS19145;product=SPI-2 type III secretion system apparatus protein SsaM;protein_id=WP_000383702.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	67943	69988	.	+	.	ID=gene-C9E96_RS19150;Name=ssaV;gbkey=Gene;gene=ssaV;gene_biotype=protein_coding;locus_tag=C9E96_RS19150;old_locus_tag=C9E96_19655
NZ_PYJX01000190.1	Protein Homology	CDS	67943	69988	.	+	0	ID=cds-WP_001258233.1;Parent=gene-C9E96_RS19150;Dbxref=GenBank:WP_001258233.1;Name=WP_001258233.1;gbkey=CDS;gene=ssaV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460379.1;locus_tag=C9E96_RS19150;product=SPI-2 type III secretion system apparatus protein SsaV;protein_id=WP_001258233.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	69978	71279	.	+	.	ID=gene-C9E96_RS19155;Name=ssaN;gbkey=Gene;gene=ssaN;gene_biotype=protein_coding;locus_tag=C9E96_RS19155;old_locus_tag=C9E96_19660
NZ_PYJX01000190.1	Protein Homology	CDS	69978	71279	.	+	0	ID=cds-WP_000787213.1;Parent=gene-C9E96_RS19155;Dbxref=GenBank:WP_000787213.1;Name=WP_000787213.1;gbkey=CDS;gene=ssaN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460380.1;locus_tag=C9E96_RS19155;product=SctN family type III secretion system ATPase SsaN;protein_id=WP_000787213.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	71282	71659	.	+	.	ID=gene-C9E96_RS19160;Name=ssaO;gbkey=Gene;gene=ssaO;gene_biotype=protein_coding;locus_tag=C9E96_RS19160;old_locus_tag=C9E96_19665
NZ_PYJX01000190.1	Protein Homology	CDS	71282	71659	.	+	0	ID=cds-WP_000449089.1;Parent=gene-C9E96_RS19160;Dbxref=GenBank:WP_000449089.1;Name=WP_000449089.1;gbkey=CDS;gene=ssaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460381.1;locus_tag=C9E96_RS19160;product=SPI-2 type III secretion system apparatus protein SsaO;protein_id=WP_000449089.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	71640	72014	.	+	.	ID=gene-C9E96_RS19165;Name=ssaP;gbkey=Gene;gene=ssaP;gene_biotype=protein_coding;locus_tag=C9E96_RS19165;old_locus_tag=C9E96_19670
NZ_PYJX01000190.1	Protein Homology	CDS	71640	72014	.	+	0	ID=cds-WP_001223313.1;Parent=gene-C9E96_RS19165;Dbxref=GenBank:WP_001223313.1;Name=WP_001223313.1;gbkey=CDS;gene=ssaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460382.1;locus_tag=C9E96_RS19165;product=SPI-2 type III secretion system apparatus protein SsaP;protein_id=WP_001223313.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	71995	72963	.	+	.	ID=gene-C9E96_RS19170;Name=ssaQ;gbkey=Gene;gene=ssaQ;gene_biotype=protein_coding;locus_tag=C9E96_RS19170;old_locus_tag=C9E96_19675
NZ_PYJX01000190.1	Protein Homology	CDS	71995	72963	.	+	0	ID=cds-WP_000944191.1;Parent=gene-C9E96_RS19170;Dbxref=GenBank:WP_000944191.1;Name=WP_000944191.1;gbkey=CDS;gene=ssaQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460383.1;locus_tag=C9E96_RS19170;product=SPI-2 type III secretion system cytoplasmic ring protein SsaQ;protein_id=WP_000944191.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	73031	73678	.	+	.	ID=gene-C9E96_RS19175;Name=ssaR;gbkey=Gene;gene=ssaR;gene_biotype=protein_coding;locus_tag=C9E96_RS19175;old_locus_tag=C9E96_19680
NZ_PYJX01000190.1	Protein Homology	CDS	73031	73678	.	+	0	ID=cds-WP_000056367.1;Parent=gene-C9E96_RS19175;Dbxref=GenBank:WP_000056367.1;Name=WP_000056367.1;gbkey=CDS;gene=ssaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460384.1;locus_tag=C9E96_RS19175;product=SPI-2 type III secretion system export apparatus protein SsaR;protein_id=WP_000056367.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	73675	73941	.	+	.	ID=gene-C9E96_RS19180;Name=ssas;gbkey=Gene;gene=ssas;gene_biotype=protein_coding;locus_tag=C9E96_RS19180;old_locus_tag=C9E96_19685
NZ_PYJX01000190.1	Protein Homology	CDS	73675	73941	.	+	0	ID=cds-WP_000999982.1;Parent=gene-C9E96_RS19180;Dbxref=GenBank:WP_000999982.1;Name=WP_000999982.1;gbkey=CDS;gene=ssas;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460385.1;locus_tag=C9E96_RS19180;product=SPI-2 type III secretion system apparatus protein SsaS;protein_id=WP_000999982.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	73942	74721	.	+	.	ID=gene-C9E96_RS19185;Name=ssaT;gbkey=Gene;gene=ssaT;gene_biotype=protein_coding;locus_tag=C9E96_RS19185;old_locus_tag=C9E96_19690
NZ_PYJX01000190.1	Protein Homology	CDS	73942	74721	.	+	0	ID=cds-WP_000068760.1;Parent=gene-C9E96_RS19185;Dbxref=GenBank:WP_000068760.1;Name=WP_000068760.1;gbkey=CDS;gene=ssaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460386.1;locus_tag=C9E96_RS19185;product=SPI-2 type III secretion system apparatus protein SsaT;protein_id=WP_000068760.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	74718	75776	.	+	.	ID=gene-C9E96_RS19190;Name=ssaU;gbkey=Gene;gene=ssaU;gene_biotype=protein_coding;locus_tag=C9E96_RS19190;old_locus_tag=C9E96_19695
NZ_PYJX01000190.1	Protein Homology	CDS	74718	75776	.	+	0	ID=cds-WP_001291716.1;Parent=gene-C9E96_RS19190;Dbxref=GenBank:WP_001291716.1;Name=WP_001291716.1;gbkey=CDS;gene=ssaU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460387.1;locus_tag=C9E96_RS19190;product=SPI-2 type III secretion system apparatus protein SsaU;protein_id=WP_001291716.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	75934	76010	.	-	.	ID=gene-C9E96_RS19195;Name=C9E96_RS19195;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS19195;old_locus_tag=C9E96_19700
NZ_PYJX01000190.1	tRNAscan-SE	tRNA	75934	76010	.	-	.	ID=rna-C9E96_RS19195;Parent=gene-C9E96_RS19195;anticodon=(pos:complement(75974..75976));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS19195;product=tRNA-Val
NZ_PYJX01000190.1	tRNAscan-SE	exon	75934	76010	.	-	.	ID=exon-C9E96_RS19195-1;Parent=rna-C9E96_RS19195;anticodon=(pos:complement(75974..75976));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS19195;product=tRNA-Val
NZ_PYJX01000190.1	RefSeq	gene	76162	77535	.	-	.	ID=gene-C9E96_RS19200;Name=mdtK;gbkey=Gene;gene=mdtK;gene_biotype=protein_coding;locus_tag=C9E96_RS19200;old_locus_tag=C9E96_19705
NZ_PYJX01000190.1	Protein Homology	CDS	76162	77535	.	-	0	ID=cds-WP_001175077.1;Parent=gene-C9E96_RS19200;Dbxref=GenBank:WP_001175077.1;Name=WP_001175077.1;gbkey=CDS;gene=mdtK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460388.2;locus_tag=C9E96_RS19200;product=multidrug efflux MATE transporter MdtK;protein_id=WP_001175077.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	77752	78393	.	+	.	ID=gene-C9E96_RS19205;Name=C9E96_RS19205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19205;old_locus_tag=C9E96_19710
NZ_PYJX01000190.1	Protein Homology	CDS	77752	78393	.	+	0	ID=cds-WP_080203991.1;Parent=gene-C9E96_RS19205;Dbxref=GenBank:WP_080203991.1;Name=WP_080203991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460389.1;locus_tag=C9E96_RS19205;product=riboflavin synthase subunit alpha;protein_id=WP_080203991.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	78435	79583	.	-	.	ID=gene-C9E96_RS19210;Name=cfa;gbkey=Gene;gene=cfa;gene_biotype=protein_coding;locus_tag=C9E96_RS19210;old_locus_tag=C9E96_19715
NZ_PYJX01000190.1	Protein Homology	CDS	78435	79583	.	-	0	ID=cds-WP_080203990.1;Parent=gene-C9E96_RS19210;Dbxref=GenBank:WP_080203990.1;Name=WP_080203990.1;gbkey=CDS;gene=cfa;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460390.1;locus_tag=C9E96_RS19210;product=cyclopropane fatty acyl phospholipid synthase;protein_id=WP_080203990.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	79873	81078	.	-	.	ID=gene-C9E96_RS19215;Name=punC;gbkey=Gene;gene=punC;gene_biotype=protein_coding;gene_synonym=ydhC;locus_tag=C9E96_RS19215;old_locus_tag=C9E96_19720
NZ_PYJX01000190.1	Protein Homology	CDS	79873	81078	.	-	0	ID=cds-WP_001182316.1;Parent=gene-C9E96_RS19215;Dbxref=GenBank:WP_001182316.1;Name=WP_001182316.1;Ontology_term=GO:1990961,GO:0042910,GO:0016020;gbkey=CDS;gene=punC;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460391.1;locus_tag=C9E96_RS19215;product=purine nucleoside transporter PunC;protein_id=WP_001182316.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	81191	82123	.	+	.	ID=gene-C9E96_RS19220;Name=punR;gbkey=Gene;gene=punR;gene_biotype=protein_coding;locus_tag=C9E96_RS19220;old_locus_tag=C9E96_19725
NZ_PYJX01000190.1	Protein Homology	CDS	81191	82123	.	+	0	ID=cds-WP_000269523.1;Parent=gene-C9E96_RS19220;Dbxref=GenBank:WP_000269523.1;Name=WP_000269523.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=punR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460392.1;locus_tag=C9E96_RS19220;product=DNA-binding transcriptional activator PunR;protein_id=WP_000269523.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	82120	83145	.	-	.	ID=gene-C9E96_RS19225;Name=purR;gbkey=Gene;gene=purR;gene_biotype=protein_coding;locus_tag=C9E96_RS19225;old_locus_tag=C9E96_19730
NZ_PYJX01000190.1	Protein Homology	CDS	82120	83145	.	-	0	ID=cds-WP_000190992.1;Parent=gene-C9E96_RS19225;Dbxref=GenBank:WP_000190992.1;Name=WP_000190992.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=purR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127190.1;locus_tag=C9E96_RS19225;product=HTH-type transcriptional repressor PurR;protein_id=WP_000190992.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	83441	83530	.	+	.	ID=gene-C9E96_RS19230;Name=C9E96_RS19230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19230;old_locus_tag=C9E96_19740
NZ_PYJX01000190.1	Protein Homology	CDS	83441	83530	.	+	0	ID=cds-WP_000102277.1;Parent=gene-C9E96_RS19230;Dbxref=GenBank:WP_000102277.1;Name=WP_000102277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165321.1;locus_tag=C9E96_RS19230;product=YnhF family membrane protein;protein_id=WP_000102277.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	83613	84194	.	-	.	ID=gene-C9E96_RS19235;Name=sodB;gbkey=Gene;gene=sodB;gene_biotype=protein_coding;locus_tag=C9E96_RS19235;old_locus_tag=C9E96_19745
NZ_PYJX01000190.1	Protein Homology	CDS	83613	84194	.	-	0	ID=cds-WP_020438077.1;Parent=gene-C9E96_RS19235;Dbxref=GenBank:WP_020438077.1;Name=WP_020438077.1;Ontology_term=GO:0006801,GO:0004784,GO:0046872;gbkey=CDS;gene=sodB;go_function=superoxide dismutase activity|0004784||IEA,metal ion binding|0046872||IEA;go_process=superoxide metabolic process|0006801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460394.1;locus_tag=C9E96_RS19235;product=superoxide dismutase [Fe];protein_id=WP_020438077.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	84321	85142	.	-	.	ID=gene-C9E96_RS19240;Name=C9E96_RS19240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19240;old_locus_tag=C9E96_19750
NZ_PYJX01000190.1	Protein Homology	CDS	84321	85142	.	-	0	ID=cds-WP_001779739.1;Parent=gene-C9E96_RS19240;Dbxref=GenBank:WP_001779739.1;Name=WP_001779739.1;Ontology_term=GO:0000270,GO:0006508,GO:0008233,GO:0008234,GO:0016787;gbkey=CDS;go_function=peptidase activity|0008233||IEA,cysteine-type peptidase activity|0008234||IEA,hydrolase activity|0016787||IEA;go_process=peptidoglycan metabolic process|0000270||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310391.1;locus_tag=C9E96_RS19240;product=C40 family peptidase;protein_id=WP_001779739.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	85478	85825	.	+	.	ID=gene-C9E96_RS19245;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=C9E96_RS19245;old_locus_tag=C9E96_19755
NZ_PYJX01000190.1	Protein Homology	CDS	85478	85825	.	+	0	ID=cds-WP_000108176.1;Parent=gene-C9E96_RS19245;Dbxref=GenBank:WP_000108176.1;Name=WP_000108176.1;gbkey=CDS;gene=grxD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460396.1;locus_tag=C9E96_RS19245;product=monothiol glutaredoxin 4;protein_id=WP_000108176.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	85903	86550	.	-	.	ID=gene-C9E96_RS19250;Name=rnt;gbkey=Gene;gene=rnt;gene_biotype=protein_coding;locus_tag=C9E96_RS19250;old_locus_tag=C9E96_19760
NZ_PYJX01000190.1	Protein Homology	CDS	85903	86550	.	-	0	ID=cds-WP_001282272.1;Parent=gene-C9E96_RS19250;Dbxref=GenBank:WP_001282272.1;Name=WP_001282272.1;Ontology_term=GO:0006364,GO:0042780,GO:0016896;gbkey=CDS;gene=rnt;go_function=RNA exonuclease activity%2C producing 5'-phosphomonoesters|0016896||IEA;go_process=rRNA processing|0006364||IEA,tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460397.1;locus_tag=C9E96_RS19250;product=ribonuclease T;protein_id=WP_001282272.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	86651	87058	.	-	.	ID=gene-C9E96_RS19255;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;locus_tag=C9E96_RS19255;old_locus_tag=C9E96_19765
NZ_PYJX01000190.1	Protein Homology	CDS	86651	87058	.	-	0	ID=cds-WP_001237787.1;Parent=gene-C9E96_RS19255;Dbxref=GenBank:WP_001237787.1;Name=WP_001237787.1;gbkey=CDS;gene=gloA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008500591.1;locus_tag=C9E96_RS19255;product=lactoylglutathione lyase;protein_id=WP_001237787.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	87127	88224	.	-	.	ID=gene-C9E96_RS19260;Name=C9E96_RS19260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19260;old_locus_tag=C9E96_19770
NZ_PYJX01000190.1	Protein Homology	CDS	87127	88224	.	-	0	ID=cds-WP_000092935.1;Parent=gene-C9E96_RS19260;Dbxref=GenBank:WP_000092935.1;Name=WP_000092935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460399.1;locus_tag=C9E96_RS19260;product=alkene reductase;protein_id=WP_000092935.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	88283	88882	.	-	.	ID=gene-C9E96_RS19265;Name=C9E96_RS19265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19265;old_locus_tag=C9E96_19775
NZ_PYJX01000190.1	Protein Homology	CDS	88283	88882	.	-	0	ID=cds-WP_001041823.1;Parent=gene-C9E96_RS19265;Dbxref=GenBank:WP_001041823.1;Name=WP_001041823.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460400.1;locus_tag=C9E96_RS19265;product=TetR/AcrR family transcriptional regulator;protein_id=WP_001041823.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	88985	89224	.	+	.	ID=gene-C9E96_RS19270;Name=C9E96_RS19270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19270;old_locus_tag=C9E96_19780
NZ_PYJX01000190.1	Protein Homology	CDS	88985	89224	.	+	0	ID=cds-WP_001538148.1;Parent=gene-C9E96_RS19270;Dbxref=GenBank:WP_001538148.1;Name=WP_001538148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460401.1;locus_tag=C9E96_RS19270;product=DUF1289 domain-containing protein;protein_id=WP_001538148.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	89275	90171	.	+	.	ID=gene-C9E96_RS19275;Name=C9E96_RS19275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19275;old_locus_tag=C9E96_19785
NZ_PYJX01000190.1	Protein Homology	CDS	89275	90171	.	+	0	ID=cds-WP_000250724.1;Parent=gene-C9E96_RS19275;Dbxref=GenBank:WP_000250724.1;Name=WP_000250724.1;Ontology_term=GO:0016491,GO:0050661;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460402.1;locus_tag=C9E96_RS19275;product=aldo/keto reductase;protein_id=WP_000250724.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	90251	90772	.	+	.	ID=gene-C9E96_RS19280;Name=sodC2;gbkey=Gene;gene=sodC2;gene_biotype=protein_coding;gene_synonym=sodCII;locus_tag=C9E96_RS19280;old_locus_tag=C9E96_19790
NZ_PYJX01000190.1	Protein Homology	CDS	90251	90772	.	+	0	ID=cds-WP_000826820.1;Parent=gene-C9E96_RS19280;Dbxref=GenBank:WP_000826820.1;Name=WP_000826820.1;gbkey=CDS;gene=sodC2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460403.1;locus_tag=C9E96_RS19280;product=superoxide dismutase [Cu-Zn] SodC2;protein_id=WP_000826820.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	90748	92787	.	-	.	ID=gene-C9E96_RS19285;Name=C9E96_RS19285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19285;old_locus_tag=C9E96_19795
NZ_PYJX01000190.1	Protein Homology	CDS	90748	92787	.	-	0	ID=cds-WP_080203989.1;Parent=gene-C9E96_RS19285;Dbxref=GenBank:WP_080203989.1;Name=WP_080203989.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460404.1;locus_tag=C9E96_RS19285;product=FUSC family protein;protein_id=WP_080203989.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	92787	93647	.	-	.	ID=gene-C9E96_RS19290;Name=C9E96_RS19290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19290;old_locus_tag=C9E96_19800
NZ_PYJX01000190.1	Protein Homology	CDS	92787	93647	.	-	0	ID=cds-WP_045340932.1;Parent=gene-C9E96_RS19290;Dbxref=GenBank:WP_045340932.1;Name=WP_045340932.1;Ontology_term=GO:0006810,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012218841.1;locus_tag=C9E96_RS19290;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_045340932.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	93650	93886	.	-	.	ID=gene-C9E96_RS19295;Name=C9E96_RS19295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19295;old_locus_tag=C9E96_19805
NZ_PYJX01000190.1	Protein Homology	CDS	93650	93886	.	-	0	ID=cds-WP_000649755.1;Parent=gene-C9E96_RS19295;Dbxref=GenBank:WP_000649755.1;Name=WP_000649755.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460406.1;locus_tag=C9E96_RS19295;product=DUF1656 domain-containing protein;protein_id=WP_000649755.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	94081	94521	.	+	.	ID=gene-C9E96_RS19300;Name=slyA;gbkey=Gene;gene=slyA;gene_biotype=protein_coding;locus_tag=C9E96_RS19300;old_locus_tag=C9E96_19810
NZ_PYJX01000190.1	Protein Homology	CDS	94081	94521	.	+	0	ID=cds-WP_000764554.1;Parent=gene-C9E96_RS19300;Dbxref=GenBank:WP_000764554.1;Name=WP_000764554.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=slyA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460407.3;locus_tag=C9E96_RS19300;product=transcriptional regulator SlyA;protein_id=WP_000764554.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	94569	95036	.	-	.	ID=gene-C9E96_RS19305;Name=slyB;gbkey=Gene;gene=slyB;gene_biotype=protein_coding;locus_tag=C9E96_RS19305;old_locus_tag=C9E96_19815
NZ_PYJX01000190.1	Protein Homology	CDS	94569	95036	.	-	0	ID=cds-WP_000597179.1;Parent=gene-C9E96_RS19305;Dbxref=GenBank:WP_000597179.1;Name=WP_000597179.1;gbkey=CDS;gene=slyB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460408.1;locus_tag=C9E96_RS19305;product=outer membrane lipoprotein SlyB;protein_id=WP_000597179.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	95309	96430	.	+	.	ID=gene-C9E96_RS19310;Name=anmK;gbkey=Gene;gene=anmK;gene_biotype=protein_coding;locus_tag=C9E96_RS19310;old_locus_tag=C9E96_19820
NZ_PYJX01000190.1	Protein Homology	CDS	95309	96430	.	+	0	ID=cds-WP_080203988.1;Parent=gene-C9E96_RS19310;Dbxref=GenBank:WP_080203988.1;Name=WP_080203988.1;gbkey=CDS;gene=anmK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460409.1;locus_tag=C9E96_RS19310;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_080203988.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	96518	96847	.	+	.	ID=gene-C9E96_RS19315;Name=mliC;gbkey=Gene;gene=mliC;gene_biotype=protein_coding;locus_tag=C9E96_RS19315;old_locus_tag=C9E96_19825
NZ_PYJX01000190.1	Protein Homology	CDS	96518	96847	.	+	0	ID=cds-WP_001132086.1;Parent=gene-C9E96_RS19315;Dbxref=GenBank:WP_001132086.1;Name=WP_001132086.1;gbkey=CDS;gene=mliC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460410.1;locus_tag=C9E96_RS19315;product=C-type lysozyme inhibitor;protein_id=WP_001132086.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	96906	97562	.	+	.	ID=gene-C9E96_RS19320;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;locus_tag=C9E96_RS19320;old_locus_tag=C9E96_19830
NZ_PYJX01000190.1	Protein Homology	CDS	96906	97562	.	+	0	ID=cds-WP_001282334.1;Parent=gene-C9E96_RS19320;Dbxref=GenBank:WP_001282334.1;Name=WP_001282334.1;Ontology_term=GO:0008615,GO:0004733,GO:0010181;gbkey=CDS;gene=pdxH;go_function=pyridoxamine phosphate oxidase activity|0004733||IEA,FMN binding|0010181||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127173.1;locus_tag=C9E96_RS19320;product=pyridoxamine 5'-phosphate oxidase;protein_id=WP_001282334.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	97689	98963	.	+	.	ID=gene-C9E96_RS19325;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=C9E96_RS19325;old_locus_tag=C9E96_19835
NZ_PYJX01000190.1	Protein Homology	CDS	97689	98963	.	+	0	ID=cds-WP_000168626.1;Parent=gene-C9E96_RS19325;Dbxref=GenBank:WP_000168626.1;Name=WP_000168626.1;Ontology_term=GO:0006437,GO:0000166,GO:0004831,GO:0005524;gbkey=CDS;gene=tyrS;go_function=nucleotide binding|0000166||IEA,tyrosine-tRNA ligase activity|0004831||IEA,ATP binding|0005524||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460412.1;locus_tag=C9E96_RS19325;product=tyrosine--tRNA ligase;protein_id=WP_000168626.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	99023	99883	.	+	.	ID=gene-C9E96_RS19330;Name=pdxY;gbkey=Gene;gene=pdxY;gene_biotype=protein_coding;locus_tag=C9E96_RS19330;old_locus_tag=C9E96_19840
NZ_PYJX01000190.1	Protein Homology	CDS	99023	99883	.	+	0	ID=cds-WP_000789736.1;Parent=gene-C9E96_RS19330;Dbxref=GenBank:WP_000789736.1;Name=WP_000789736.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxY;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460413.1;locus_tag=C9E96_RS19330;product=pyridoxal kinase PdxY;protein_id=WP_000789736.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	gene	99942	100547	.	-	.	ID=gene-C9E96_RS19335;Name=gstA;gbkey=Gene;gene=gstA;gene_biotype=protein_coding;locus_tag=C9E96_RS19335;old_locus_tag=C9E96_19845
NZ_PYJX01000190.1	Protein Homology	CDS	99942	100547	.	-	0	ID=cds-WP_000765727.1;Parent=gene-C9E96_RS19335;Dbxref=GenBank:WP_000765727.1;Name=WP_000765727.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=gstA;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460414.1;locus_tag=C9E96_RS19335;product=glutathione transferase GstA;protein_id=WP_000765727.1;transl_table=11
NZ_PYJX01000190.1	RefSeq	pseudogene	100652	100903	.	-	.	ID=gene-C9E96_RS19340;Name=tppB;end_range=100903,.;gbkey=Gene;gene=tppB;gene_biotype=pseudogene;gene_synonym=ydgR;locus_tag=C9E96_RS19340;old_locus_tag=C9E96_19850;partial=true;pseudo=true
NZ_PYJX01000190.1	Protein Homology	CDS	100652	100903	.	-	0	ID=cds-C9E96_RS19340;Parent=gene-C9E96_RS19340;Note=mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium%3B member of proton-dependent oligopeptide transport (POT) system family%3B in Escherichia coli this gene is regulated by OmpR although not via osmoregulation%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=100903,.;gbkey=CDS;gene=tppB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460415.1;locus_tag=C9E96_RS19340;partial=true;product=dipeptide/tripeptide permease;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000132.1 1 29310
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000132.1	RefSeq	region	1	29310	.	+	.	ID=NZ_PYJX01000132.1:1..29310;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000132.1	RefSeq	gene	465	674	.	-	.	ID=gene-C9E96_RS11030;Name=C9E96_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11030;old_locus_tag=C9E96_11300
NZ_PYJX01000132.1	Protein Homology	CDS	465	674	.	-	0	ID=cds-WP_000981672.1;Parent=gene-C9E96_RS11030;Dbxref=GenBank:WP_000981672.1;Name=WP_000981672.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000230236.1;locus_tag=C9E96_RS11030;product=hypothetical protein;protein_id=WP_000981672.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	pseudogene	910	1284	.	-	.	ID=gene-C9E96_RS11035;Name=C9E96_RS11035;end_range=1284,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS11035;old_locus_tag=C9E96_11305;partial=true;pseudo=true
NZ_PYJX01000132.1	Protein Homology	CDS	910	1284	.	-	0	ID=cds-C9E96_RS11035;Parent=gene-C9E96_RS11035;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1284,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000635961.1;locus_tag=C9E96_RS11035;partial=true;product=ATP-binding protein;pseudo=true;transl_table=11
NZ_PYJX01000132.1	RefSeq	pseudogene	1288	1512	.	+	.	ID=gene-C9E96_RS11040;Name=C9E96_RS11040;end_range=1512,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS11040;old_locus_tag=C9E96_11310;partial=true;pseudo=true;start_range=.,1288
NZ_PYJX01000132.1	Protein Homology	CDS	1288	1512	.	+	0	ID=cds-C9E96_RS11040;Parent=gene-C9E96_RS11040;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0055085,GO:0022857,GO:0016020;end_range=1512,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415107.1;locus_tag=C9E96_RS11040;partial=true;product=efflux RND transporter permease subunit;pseudo=true;start_range=.,1288;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	1530	2384	.	-	.	ID=gene-C9E96_RS11045;Name=rclR;gbkey=Gene;gene=rclR;gene_biotype=protein_coding;locus_tag=C9E96_RS11045;old_locus_tag=C9E96_11315
NZ_PYJX01000132.1	Protein Homology	CDS	1530	2384	.	-	0	ID=cds-WP_023182280.1;Parent=gene-C9E96_RS11045;Dbxref=GenBank:WP_023182280.1;Name=WP_023182280.1;gbkey=CDS;gene=rclR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459555.1;locus_tag=C9E96_RS11045;product=reactive chlorine-specific transcriptional regulator RclR;protein_id=WP_023182280.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	2600	3925	.	+	.	ID=gene-C9E96_RS11050;Name=rclA;gbkey=Gene;gene=rclA;gene_biotype=protein_coding;locus_tag=C9E96_RS11050;old_locus_tag=C9E96_11320
NZ_PYJX01000132.1	Protein Homology	CDS	2600	3925	.	+	0	ID=cds-WP_023993242.1;Parent=gene-C9E96_RS11050;Dbxref=GenBank:WP_023993242.1;Name=WP_023993242.1;gbkey=CDS;gene=rclA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459556.1;locus_tag=C9E96_RS11050;product=reactive chlorine resistance oxidoreductase RclA;protein_id=WP_023993242.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	4082	4318	.	+	.	ID=gene-C9E96_RS11055;Name=rclB;gbkey=Gene;gene=rclB;gene_biotype=protein_coding;locus_tag=C9E96_RS11055;old_locus_tag=C9E96_11325
NZ_PYJX01000132.1	Protein Homology	CDS	4082	4318	.	+	0	ID=cds-WP_000922168.1;Parent=gene-C9E96_RS11055;Dbxref=GenBank:WP_000922168.1;Name=WP_000922168.1;gbkey=CDS;gene=rclB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459557.1;locus_tag=C9E96_RS11055;product=reactive chlorine resistance periplasmic protein RclB;protein_id=WP_000922168.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	4331	4891	.	+	.	ID=gene-C9E96_RS11060;Name=rclC;gbkey=Gene;gene=rclC;gene_biotype=protein_coding;locus_tag=C9E96_RS11060;old_locus_tag=C9E96_11330
NZ_PYJX01000132.1	Protein Homology	CDS	4331	4891	.	+	0	ID=cds-WP_000362177.1;Parent=gene-C9E96_RS11060;Dbxref=GenBank:WP_000362177.1;Name=WP_000362177.1;gbkey=CDS;gene=rclC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459558.1;locus_tag=C9E96_RS11060;product=reactive chlorine resistance membrane protein RclC;protein_id=WP_000362177.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	4970	6145	.	-	.	ID=gene-C9E96_RS11065;Name=C9E96_RS11065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11065;old_locus_tag=C9E96_11335
NZ_PYJX01000132.1	Protein Homology	CDS	4970	6145	.	-	0	ID=cds-WP_001033453.1;Parent=gene-C9E96_RS11065;Dbxref=GenBank:WP_001033453.1;Name=WP_001033453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459559.1;locus_tag=C9E96_RS11065;product=DnaJ family molecular chaperone;protein_id=WP_001033453.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	6470	7864	.	+	.	ID=gene-C9E96_RS11070;Name=pheP;gbkey=Gene;gene=pheP;gene_biotype=protein_coding;locus_tag=C9E96_RS11070;old_locus_tag=C9E96_11340
NZ_PYJX01000132.1	Protein Homology	CDS	6470	7864	.	+	0	ID=cds-WP_023993241.1;Parent=gene-C9E96_RS11070;Dbxref=GenBank:WP_023993241.1;Name=WP_023993241.1;Ontology_term=GO:0006865;gbkey=CDS;gene=pheP;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459560.1;locus_tag=C9E96_RS11070;product=phenylalanine transporter;protein_id=WP_023993241.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	7906	9153	.	-	.	ID=gene-C9E96_RS11075;Name=C9E96_RS11075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11075;old_locus_tag=C9E96_11345
NZ_PYJX01000132.1	Protein Homology	CDS	7906	9153	.	-	0	ID=cds-WP_001156978.1;Parent=gene-C9E96_RS11075;Dbxref=GenBank:WP_001156978.1;Name=WP_001156978.1;Ontology_term=GO:0008381;gbkey=CDS;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459561.1;locus_tag=C9E96_RS11075;product=mechanosensitive ion channel family protein;protein_id=WP_001156978.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	9464	11434	.	+	.	ID=gene-C9E96_RS11080;Name=C9E96_RS11080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11080;old_locus_tag=C9E96_11355
NZ_PYJX01000132.1	Protein Homology	CDS	9464	11434	.	+	0	ID=cds-WP_080203781.1;Parent=gene-C9E96_RS11080;Dbxref=GenBank:WP_080203781.1;Name=WP_080203781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459562.1;locus_tag=C9E96_RS11080;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_080203781.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	11701	12354	.	-	.	ID=gene-C9E96_RS11085;Name=nfsB;gbkey=Gene;gene=nfsB;gene_biotype=protein_coding;locus_tag=C9E96_RS11085;old_locus_tag=C9E96_11360
NZ_PYJX01000132.1	Protein Homology	CDS	11701	12354	.	-	0	ID=cds-WP_000355879.1;Parent=gene-C9E96_RS11085;Dbxref=GenBank:WP_000355879.1;Name=WP_000355879.1;Ontology_term=GO:0016491;gbkey=CDS;gene=nfsB;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459570.1;locus_tag=C9E96_RS11085;product=oxygen-insensitive NAD(P)H nitroreductase;protein_id=WP_000355879.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	12451	12819	.	-	.	ID=gene-C9E96_RS11090;Name=C9E96_RS11090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11090;old_locus_tag=C9E96_11365
NZ_PYJX01000132.1	Protein Homology	CDS	12451	12819	.	-	0	ID=cds-WP_000348999.1;Parent=gene-C9E96_RS11090;Dbxref=GenBank:WP_000348999.1;Name=WP_000348999.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459571.1;locus_tag=C9E96_RS11090;product=MmcQ/YjbR family DNA-binding protein;protein_id=WP_000348999.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	12819	13400	.	-	.	ID=gene-C9E96_RS11095;Name=C9E96_RS11095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11095;old_locus_tag=C9E96_11370
NZ_PYJX01000132.1	Protein Homology	CDS	12819	13400	.	-	0	ID=cds-WP_000113609.1;Parent=gene-C9E96_RS11095;Dbxref=GenBank:WP_000113609.1;Name=WP_000113609.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459572.1;locus_tag=C9E96_RS11095;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000113609.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	13689	14030	.	+	.	ID=gene-C9E96_RS11100;Name=C9E96_RS11100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11100;old_locus_tag=C9E96_11375
NZ_PYJX01000132.1	Protein Homology	CDS	13689	14030	.	+	0	ID=cds-WP_000155631.1;Parent=gene-C9E96_RS11100;Dbxref=GenBank:WP_000155631.1;Name=WP_000155631.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459573.1;locus_tag=C9E96_RS11100;product=RamA family antibiotic efflux transcriptional regulator;protein_id=WP_000155631.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	14036	14284	.	-	.	ID=gene-C9E96_RS11105;Name=C9E96_RS11105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11105;old_locus_tag=C9E96_11380
NZ_PYJX01000132.1	Protein Homology	CDS	14036	14284	.	-	0	ID=cds-WP_000682497.1;Parent=gene-C9E96_RS11105;Dbxref=GenBank:WP_000682497.1;Name=WP_000682497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459574.1;locus_tag=C9E96_RS11105;product=DUF1158 family protein;protein_id=WP_000682497.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	pseudogene	14351	15469	.	-	.	ID=gene-C9E96_RS11110;Name=C9E96_RS11110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS11110;old_locus_tag=C9E96_11385;pseudo=true
NZ_PYJX01000132.1	Protein Homology	CDS	14351	15469	.	-	0	ID=cds-C9E96_RS11110;Parent=gene-C9E96_RS11110;Note=internal stop;Ontology_term=GO:0042398,GO:0004357;gbkey=CDS;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=modified amino acid biosynthetic process|0042398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459575.1;locus_tag=C9E96_RS11110;product=YbdK family carboxylate-amine ligase;pseudo=true;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	15481	16185	.	-	.	ID=gene-C9E96_RS11115;Name=entD;gbkey=Gene;gene=entD;gene_biotype=protein_coding;locus_tag=C9E96_RS11115;old_locus_tag=C9E96_11390
NZ_PYJX01000132.1	Protein Homology	CDS	15481	16185	.	-	0	ID=cds-WP_080203779.1;Parent=gene-C9E96_RS11115;Dbxref=GenBank:WP_080203779.1;Name=WP_080203779.1;Ontology_term=GO:0009239,GO:0000287,GO:0008897,GO:0009366;gbkey=CDS;gene=entD;go_component=enterobactin synthetase complex|0009366||IEA;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=enterobactin biosynthetic process|0009239||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459576.1;locus_tag=C9E96_RS11115;product=enterobactin synthase subunit EntD;protein_id=WP_080203779.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	16231	18486	.	-	.	ID=gene-C9E96_RS11120;Name=C9E96_RS11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11120;old_locus_tag=C9E96_11395
NZ_PYJX01000132.1	Protein Homology	CDS	16231	18486	.	-	0	ID=cds-WP_080203778.1;Parent=gene-C9E96_RS11120;Dbxref=GenBank:WP_080203778.1;Name=WP_080203778.1;Ontology_term=GO:0015891,GO:0015343,GO:0038023,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=siderophore-iron transmembrane transporter activity|0015343||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459577.1;locus_tag=C9E96_RS11120;product=TonB-dependent siderophore receptor;protein_id=WP_080203778.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	18675	19889	.	+	.	ID=gene-C9E96_RS11125;Name=fes;gbkey=Gene;gene=fes;gene_biotype=protein_coding;locus_tag=C9E96_RS11125;old_locus_tag=C9E96_11400
NZ_PYJX01000132.1	Protein Homology	CDS	18675	19889	.	+	0	ID=cds-WP_000656599.1;Parent=gene-C9E96_RS11125;Dbxref=GenBank:WP_000656599.1;Name=WP_000656599.1;Ontology_term=GO:0005506,GO:0008849;gbkey=CDS;gene=fes;go_function=iron ion binding|0005506||IEA,enterochelin esterase activity|0008849||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459578.1;locus_tag=C9E96_RS11125;product=enterochelin esterase;protein_id=WP_000656599.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	19920	20138	.	+	.	ID=gene-C9E96_RS11130;Name=C9E96_RS11130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11130;old_locus_tag=C9E96_11405
NZ_PYJX01000132.1	Protein Homology	CDS	19920	20138	.	+	0	ID=cds-WP_000396006.1;Parent=gene-C9E96_RS11130;Dbxref=GenBank:WP_000396006.1;Name=WP_000396006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459579.1;locus_tag=C9E96_RS11130;product=MbtH family protein;protein_id=WP_000396006.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	20135	24019	.	+	.	ID=gene-C9E96_RS11135;Name=entF;gbkey=Gene;gene=entF;gene_biotype=protein_coding;locus_tag=C9E96_RS11135;old_locus_tag=C9E96_11410
NZ_PYJX01000132.1	Protein Homology	CDS	20135	24019	.	+	0	ID=cds-WP_135494202.1;Parent=gene-C9E96_RS11135;Dbxref=GenBank:WP_135494202.1;Name=WP_135494202.1;Ontology_term=GO:0009058,GO:0003824,GO:0031177;gbkey=CDS;gene=entF;go_function=catalytic activity|0003824||IEA,phosphopantetheine binding|0031177||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459580.1;locus_tag=C9E96_RS11135;product=enterobactin non-ribosomal peptide synthetase EntF;protein_id=WP_135494202.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	24269	25405	.	+	.	ID=gene-C9E96_RS11140;Name=wzz(fepE);gbkey=Gene;gene=wzz(fepE);gene_biotype=protein_coding;locus_tag=C9E96_RS11140;old_locus_tag=C9E96_11415
NZ_PYJX01000132.1	Protein Homology	CDS	24269	25405	.	+	0	ID=cds-WP_135494204.1;Parent=gene-C9E96_RS11140;Dbxref=GenBank:WP_135494204.1;Name=WP_135494204.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;gene=wzz(fepE);go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459581.1;locus_tag=C9E96_RS11140;product=LPS O-antigen length regulator Wzz(fepE);protein_id=WP_135494204.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	25459	26253	.	-	.	ID=gene-C9E96_RS11145;Name=fepC;gbkey=Gene;gene=fepC;gene_biotype=protein_coding;locus_tag=C9E96_RS11145;old_locus_tag=C9E96_11420
NZ_PYJX01000132.1	Protein Homology	CDS	25459	26253	.	-	0	ID=cds-WP_000140622.1;Parent=gene-C9E96_RS11145;Dbxref=GenBank:WP_000140622.1;Name=WP_000140622.1;Ontology_term=GO:0005524;gbkey=CDS;gene=fepC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459582.1;locus_tag=C9E96_RS11145;product=iron-enterobactin ABC transporter ATP-binding protein;protein_id=WP_000140622.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	26250	27239	.	-	.	ID=gene-C9E96_RS11150;Name=fepG;gbkey=Gene;gene=fepG;gene_biotype=protein_coding;locus_tag=C9E96_RS11150;old_locus_tag=C9E96_11425
NZ_PYJX01000132.1	Protein Homology	CDS	26250	27239	.	-	0	ID=cds-WP_000480064.1;Parent=gene-C9E96_RS11150;Dbxref=GenBank:WP_000480064.1;Name=WP_000480064.1;Ontology_term=GO:0022857;gbkey=CDS;gene=fepG;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459583.1;locus_tag=C9E96_RS11150;product=iron-enterobactin ABC transporter permease;protein_id=WP_000480064.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	27239	28246	.	-	.	ID=gene-C9E96_RS11155;Name=fepD;gbkey=Gene;gene=fepD;gene_biotype=protein_coding;locus_tag=C9E96_RS11155;old_locus_tag=C9E96_11430
NZ_PYJX01000132.1	Protein Homology	CDS	27239	28246	.	-	0	ID=cds-WP_001277879.1;Parent=gene-C9E96_RS11155;Dbxref=GenBank:WP_001277879.1;Name=WP_001277879.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;gene=fepD;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459584.1;locus_tag=C9E96_RS11155;product=Fe(3+)-siderophore ABC transporter permease;protein_id=WP_001277879.1;transl_table=11
NZ_PYJX01000132.1	RefSeq	gene	28357	29310	.	+	.	ID=gene-C9E96_RS11160;Name=entS;end_range=29310,.;gbkey=Gene;gene=entS;gene_biotype=protein_coding;locus_tag=C9E96_RS11160;old_locus_tag=C9E96_11435;partial=true
NZ_PYJX01000132.1	Protein Homology	CDS	28357	29310	.	+	0	ID=cds-WP_135494205.1;Parent=gene-C9E96_RS11160;Dbxref=GenBank:WP_135494205.1;Name=WP_135494205.1;Ontology_term=GO:0042930,GO:0042931;end_range=29310,.;gbkey=CDS;gene=entS;go_function=enterobactin transmembrane transporter activity|0042931||IEA;go_process=enterobactin transport|0042930||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459585.1;locus_tag=C9E96_RS11160;partial=true;product=enterobactin transporter EntS;protein_id=WP_135494205.1;transl_table=11
##sequence-region NZ_PYJX01000078.1 1 29074
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000078.1	RefSeq	region	1	29074	.	+	.	ID=NZ_PYJX01000078.1:1..29074;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000078.1	RefSeq	gene	1	79	.	+	.	ID=gene-C9E96_RS24500;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9E96_RS24500;partial=true;start_range=.,1
NZ_PYJX01000078.1	cmsearch	rRNA	1	79	.	+	.	ID=rna-C9E96_RS24500;Parent=gene-C9E96_RS24500;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS24500;partial=true;product=5S ribosomal RNA;start_range=.,1
NZ_PYJX01000078.1	cmsearch	exon	1	79	.	+	.	ID=exon-C9E96_RS24500-1;Parent=rna-C9E96_RS24500;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS24500;partial=true;product=5S ribosomal RNA;start_range=.,1
NZ_PYJX01000078.1	RefSeq	gene	795	1016	.	-	.	ID=gene-C9E96_RS06540;Name=C9E96_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06540;old_locus_tag=C9E96_06695
NZ_PYJX01000078.1	Protein Homology	CDS	795	1016	.	-	0	ID=cds-WP_000825645.1;Parent=gene-C9E96_RS06540;Dbxref=GenBank:WP_000825645.1;Name=WP_000825645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462302.1;locus_tag=C9E96_RS06540;product=membrane protein;protein_id=WP_000825645.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	1253	4366	.	-	.	ID=gene-C9E96_RS06545;Name=C9E96_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06545;old_locus_tag=C9E96_06700
NZ_PYJX01000078.1	Protein Homology	CDS	1253	4366	.	-	0	ID=cds-WP_135493997.1;Parent=gene-C9E96_RS06545;Dbxref=GenBank:WP_135493997.1;Name=WP_135493997.1;Ontology_term=GO:0042908,GO:0015562,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462301.1;locus_tag=C9E96_RS06545;product=efflux RND transporter permease subunit;protein_id=WP_135493997.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	4378	5535	.	-	.	ID=gene-C9E96_RS06550;Name=C9E96_RS06550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06550;old_locus_tag=C9E96_06705
NZ_PYJX01000078.1	Protein Homology	CDS	4378	5535	.	-	0	ID=cds-WP_000160383.1;Parent=gene-C9E96_RS06550;Dbxref=GenBank:WP_000160383.1;Name=WP_000160383.1;Ontology_term=GO:0006810,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462300.1;locus_tag=C9E96_RS06550;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_000160383.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	5949	6611	.	+	.	ID=gene-C9E96_RS06555;Name=envR;gbkey=Gene;gene=envR;gene_biotype=protein_coding;locus_tag=C9E96_RS06555;old_locus_tag=C9E96_06710
NZ_PYJX01000078.1	Protein Homology	CDS	5949	6611	.	+	0	ID=cds-WP_001085725.1;Parent=gene-C9E96_RS06555;Dbxref=GenBank:WP_001085725.1;Name=WP_001085725.1;gbkey=CDS;gene=envR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462299.1;locus_tag=C9E96_RS06555;product=acrEF/envCD operon transcriptional regulator;protein_id=WP_001085725.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	6614	8713	.	-	.	ID=gene-C9E96_RS06560;Name=C9E96_RS06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06560;old_locus_tag=C9E96_06715
NZ_PYJX01000078.1	Protein Homology	CDS	6614	8713	.	-	0	ID=cds-WP_023993975.1;Parent=gene-C9E96_RS06560;Dbxref=GenBank:WP_023993975.1;Name=WP_023993975.1;Ontology_term=GO:0005525,GO:0046872,GO:0052621,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA,cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462298.1;locus_tag=C9E96_RS06560;product=putative bifunctional diguanylate cyclase/phosphodiesterase;protein_id=WP_023993975.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	8864	9028	.	-	.	ID=gene-C9E96_RS06565;Name=C9E96_RS06565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06565;old_locus_tag=C9E96_06720
NZ_PYJX01000078.1	Protein Homology	CDS	8864	9028	.	-	0	ID=cds-WP_000620015.1;Parent=gene-C9E96_RS06565;Dbxref=GenBank:WP_000620015.1;Name=WP_000620015.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462297.1;locus_tag=C9E96_RS06565;product=DUF2556 family protein;protein_id=WP_000620015.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	9111	9995	.	-	.	ID=gene-C9E96_RS06570;Name=yhdJ;gbkey=Gene;gene=yhdJ;gene_biotype=protein_coding;locus_tag=C9E96_RS06570;old_locus_tag=C9E96_06725
NZ_PYJX01000078.1	Protein Homology	CDS	9111	9995	.	-	0	ID=cds-WP_000642611.1;Parent=gene-C9E96_RS06570;Dbxref=GenBank:WP_000642611.1;Name=WP_000642611.1;Ontology_term=GO:0003677,GO:0008170;gbkey=CDS;gene=yhdJ;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462296.1;locus_tag=C9E96_RS06570;product=adenine-specific DNA-methyltransferase;protein_id=WP_000642611.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	10081	10377	.	-	.	ID=gene-C9E96_RS06575;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=C9E96_RS06575;old_locus_tag=C9E96_06730
NZ_PYJX01000078.1	Protein Homology	CDS	10081	10377	.	-	0	ID=cds-WP_000462905.1;Parent=gene-C9E96_RS06575;Dbxref=GenBank:WP_000462905.1;Name=WP_000462905.1;gbkey=CDS;gene=fis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001465625.1;locus_tag=C9E96_RS06575;product=DNA-binding transcriptional regulator Fis;protein_id=WP_000462905.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	10403	11368	.	-	.	ID=gene-C9E96_RS06580;Name=dusB;gbkey=Gene;gene=dusB;gene_biotype=protein_coding;locus_tag=C9E96_RS06580;old_locus_tag=C9E96_06735
NZ_PYJX01000078.1	Protein Homology	CDS	10403	11368	.	-	0	ID=cds-WP_001219664.1;Parent=gene-C9E96_RS06580;Dbxref=GenBank:WP_001219664.1;Name=WP_001219664.1;Ontology_term=GO:0008033,GO:0017150,GO:0050660;gbkey=CDS;gene=dusB;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785970.1;locus_tag=C9E96_RS06580;product=tRNA dihydrouridine synthase DusB;protein_id=WP_001219664.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	12029	12910	.	-	.	ID=gene-C9E96_RS06585;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=C9E96_RS06585;old_locus_tag=C9E96_06740
NZ_PYJX01000078.1	Protein Homology	CDS	12029	12910	.	-	0	ID=cds-WP_001145849.1;Parent=gene-C9E96_RS06585;Dbxref=GenBank:WP_001145849.1;Name=WP_001145849.1;Ontology_term=GO:0036211,GO:0008757;gbkey=CDS;gene=prmA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462293.1;locus_tag=C9E96_RS06585;product=50S ribosomal protein L11 methyltransferase;protein_id=WP_001145849.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	12922	14373	.	-	.	ID=gene-C9E96_RS06590;Name=panF;gbkey=Gene;gene=panF;gene_biotype=protein_coding;locus_tag=C9E96_RS06590;old_locus_tag=C9E96_06745
NZ_PYJX01000078.1	Protein Homology	CDS	12922	14373	.	-	0	ID=cds-WP_023993976.1;Parent=gene-C9E96_RS06590;Dbxref=GenBank:WP_023993976.1;Name=WP_023993976.1;Ontology_term=GO:0015887,GO:0036376,GO:0015081,GO:0015233,GO:0016020;gbkey=CDS;gene=panF;go_component=membrane|0016020||IEA;go_function=sodium ion transmembrane transporter activity|0015081||IEA,pantothenate transmembrane transporter activity|0015233||IEA;go_process=pantothenate transmembrane transport|0015887||IEA,sodium ion export across plasma membrane|0036376||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462292.1;locus_tag=C9E96_RS06590;product=sodium/pantothenate symporter;protein_id=WP_023993976.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	14363	14605	.	-	.	ID=gene-C9E96_RS06595;Name=C9E96_RS06595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06595;old_locus_tag=C9E96_06750
NZ_PYJX01000078.1	Protein Homology	CDS	14363	14605	.	-	0	ID=cds-WP_000340018.1;Parent=gene-C9E96_RS06595;Dbxref=GenBank:WP_000340018.1;Name=WP_000340018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462291.1;locus_tag=C9E96_RS06595;product=YhdT family protein;protein_id=WP_000340018.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	14714	16063	.	-	.	ID=gene-C9E96_RS06600;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=C9E96_RS06600;old_locus_tag=C9E96_06755
NZ_PYJX01000078.1	Protein Homology	CDS	14714	16063	.	-	0	ID=cds-WP_000884627.1;Parent=gene-C9E96_RS06600;Dbxref=GenBank:WP_000884627.1;Name=WP_000884627.1;Ontology_term=GO:0004075,GO:0016874,GO:0009317;gbkey=CDS;gene=accC;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=biotin carboxylase activity|0004075||IEA,ligase activity|0016874||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009483995.1;locus_tag=C9E96_RS06600;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_000884627.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	16074	16544	.	-	.	ID=gene-C9E96_RS06605;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=C9E96_RS06605;old_locus_tag=C9E96_06760
NZ_PYJX01000078.1	Protein Homology	CDS	16074	16544	.	-	0	ID=cds-WP_000354626.1;Parent=gene-C9E96_RS06605;Dbxref=GenBank:WP_000354626.1;Name=WP_000354626.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accB;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462289.1;locus_tag=C9E96_RS06605;product=acetyl-CoA carboxylase biotin carboxyl carrier protein;protein_id=WP_000354626.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	16937	17536	.	-	.	ID=gene-C9E96_RS06610;Name=msrQ;gbkey=Gene;gene=msrQ;gene_biotype=protein_coding;locus_tag=C9E96_RS06610;old_locus_tag=C9E96_06765
NZ_PYJX01000078.1	Protein Homology	CDS	16937	17536	.	-	0	ID=cds-WP_001241496.1;Parent=gene-C9E96_RS06610;Dbxref=GenBank:WP_001241496.1;Name=WP_001241496.1;gbkey=CDS;gene=msrQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462288.1;locus_tag=C9E96_RS06610;product=protein-methionine-sulfoxide reductase heme-binding subunit MsrQ;protein_id=WP_001241496.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	17537	18541	.	-	.	ID=gene-C9E96_RS06615;Name=msrP;gbkey=Gene;gene=msrP;gene_biotype=protein_coding;locus_tag=C9E96_RS06615;old_locus_tag=C9E96_06770
NZ_PYJX01000078.1	Protein Homology	CDS	17537	18541	.	-	0	ID=cds-WP_000723850.1;Parent=gene-C9E96_RS06615;Dbxref=GenBank:WP_000723850.1;Name=WP_000723850.1;Ontology_term=GO:0030091,GO:0016667,GO:0043546;gbkey=CDS;gene=msrP;go_function=oxidoreductase activity%2C acting on a sulfur group of donors|0016667||IEA,molybdopterin cofactor binding|0043546||IEA;go_process=protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462287.1;locus_tag=C9E96_RS06615;product=protein-methionine-sulfoxide reductase catalytic subunit MsrP;protein_id=WP_000723850.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	18654	19628	.	-	.	ID=gene-C9E96_RS06620;Name=C9E96_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06620;old_locus_tag=C9E96_06775
NZ_PYJX01000078.1	Protein Homology	CDS	18654	19628	.	-	0	ID=cds-WP_001148246.1;Parent=gene-C9E96_RS06620;Dbxref=GenBank:WP_001148246.1;Name=WP_001148246.1;Ontology_term=GO:0004022,GO:0008270,GO:0030554;gbkey=CDS;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,zinc ion binding|0008270||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462286.1;locus_tag=C9E96_RS06620;product=MDR family oxidoreductase;protein_id=WP_001148246.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	19832	21772	.	+	.	ID=gene-C9E96_RS06625;Name=csrD;gbkey=Gene;gene=csrD;gene_biotype=protein_coding;locus_tag=C9E96_RS06625;old_locus_tag=C9E96_06780
NZ_PYJX01000078.1	Protein Homology	CDS	19832	21772	.	+	0	ID=cds-WP_001620457.1;Parent=gene-C9E96_RS06625;Dbxref=GenBank:WP_001620457.1;Name=WP_001620457.1;gbkey=CDS;gene=csrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462285.1;locus_tag=C9E96_RS06625;product=RNase E specificity factor CsrD;protein_id=WP_001620457.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	22080	23123	.	+	.	ID=gene-C9E96_RS06635;Name=mreB;gbkey=Gene;gene=mreB;gene_biotype=protein_coding;locus_tag=C9E96_RS06635;old_locus_tag=C9E96_06795
NZ_PYJX01000078.1	Protein Homology	CDS	22080	23123	.	+	0	ID=cds-WP_000913396.1;Parent=gene-C9E96_RS06635;Dbxref=GenBank:WP_000913396.1;Name=WP_000913396.1;gbkey=CDS;gene=mreB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000913396.1;locus_tag=C9E96_RS06635;product=rod shape-determining protein MreB;protein_id=WP_000913396.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	23188	24240	.	+	.	ID=gene-C9E96_RS06640;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=C9E96_RS06640;old_locus_tag=C9E96_06800
NZ_PYJX01000078.1	Protein Homology	CDS	23188	24240	.	+	0	ID=cds-WP_135493999.1;Parent=gene-C9E96_RS06640;Dbxref=GenBank:WP_135493999.1;Name=WP_135493999.1;Ontology_term=GO:0008360;gbkey=CDS;gene=mreC;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462283.1;locus_tag=C9E96_RS06640;product=rod shape-determining protein MreC;protein_id=WP_135493999.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	24243	24731	.	+	.	ID=gene-C9E96_RS06645;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=C9E96_RS06645;old_locus_tag=C9E96_06805
NZ_PYJX01000078.1	Protein Homology	CDS	24243	24731	.	+	0	ID=cds-WP_000179403.1;Parent=gene-C9E96_RS06645;Dbxref=GenBank:WP_000179403.1;Name=WP_000179403.1;gbkey=CDS;gene=mreD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001487551.1;locus_tag=C9E96_RS06645;product=rod shape-determining protein MreD;protein_id=WP_000179403.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	24740	25333	.	+	.	ID=gene-C9E96_RS06650;Name=C9E96_RS06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06650;old_locus_tag=C9E96_06810
NZ_PYJX01000078.1	Protein Homology	CDS	24740	25333	.	+	0	ID=cds-WP_000210306.1;Parent=gene-C9E96_RS06650;Dbxref=GenBank:WP_000210306.1;Name=WP_000210306.1;Ontology_term=GO:0009117,GO:0009146,GO:0000166,GO:0047429;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleotide metabolic process|0009117||IEA,purine nucleoside triphosphate catabolic process|0009146||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462281.1;locus_tag=C9E96_RS06650;product=Maf family protein;protein_id=WP_000210306.1;transl_table=11
NZ_PYJX01000078.1	RefSeq	pseudogene	25323	26792	.	+	.	ID=gene-C9E96_RS06655;Name=rng;gbkey=Gene;gene=rng;gene_biotype=pseudogene;locus_tag=C9E96_RS06655;old_locus_tag=C9E96_06815;pseudo=true
NZ_PYJX01000078.1	Protein Homology	CDS	25323	26792	.	+	0	ID=cds-C9E96_RS06655;Parent=gene-C9E96_RS06655;Note=internal stop;Ontology_term=GO:0006396,GO:0003723,GO:0004540;gbkey=CDS;gene=rng;go_function=RNA binding|0003723||IEA,RNA nuclease activity|0004540||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818051.1;locus_tag=C9E96_RS06655;product=ribonuclease G;pseudo=true;transl_table=11
NZ_PYJX01000078.1	RefSeq	gene	26903	29074	.	+	.	ID=gene-C9E96_RS06660;Name=C9E96_RS06660;end_range=29074,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS06660;old_locus_tag=C9E96_06820;partial=true
NZ_PYJX01000078.1	Protein Homology	CDS	26903	29074	.	+	0	ID=cds-WP_135494001.1;Parent=gene-C9E96_RS06660;Dbxref=GenBank:WP_135494001.1;Name=WP_135494001.1;end_range=29074,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462279.1;locus_tag=C9E96_RS06660;partial=true;product=YhdP family protein;protein_id=WP_135494001.1;transl_table=11
##sequence-region NZ_PYJX01000037.1 1 28896
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000037.1	RefSeq	region	1	28896	.	+	.	ID=NZ_PYJX01000037.1:1..28896;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000037.1	RefSeq	gene	1	114	.	+	.	ID=gene-C9E96_RS02285;Name=C9E96_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02285;old_locus_tag=C9E96_02320;partial=true;start_range=.,1
NZ_PYJX01000037.1	Protein Homology	CDS	1	114	.	+	0	ID=cds-WP_000607214.1-2;Parent=gene-C9E96_RS02285;Dbxref=GenBank:WP_000607214.1;Name=WP_000607214.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=C9E96_RS02285;partial=true;product=elongation factor Tu;protein_id=WP_000607214.1;start_range=.,1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	344	727	.	+	.	ID=gene-C9E96_RS02290;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=C9E96_RS02290;old_locus_tag=C9E96_02325
NZ_PYJX01000037.1	Protein Homology	CDS	344	727	.	+	0	ID=cds-WP_001275691.1;Parent=gene-C9E96_RS02290;Dbxref=GenBank:WP_001275691.1;Name=WP_001275691.1;gbkey=CDS;gene=secE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007665874.1;locus_tag=C9E96_RS02290;product=preprotein translocase subunit SecE;protein_id=WP_001275691.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	729	1274	.	+	.	ID=gene-C9E96_RS02295;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=C9E96_RS02295;old_locus_tag=C9E96_02330
NZ_PYJX01000037.1	Protein Homology	CDS	729	1274	.	+	0	ID=cds-WP_001287521.1;Parent=gene-C9E96_RS02295;Dbxref=GenBank:WP_001287521.1;Name=WP_001287521.1;Ontology_term=GO:0032784;gbkey=CDS;gene=nusG;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005280494.1;locus_tag=C9E96_RS02295;product=transcription termination/antitermination protein NusG;protein_id=WP_001287521.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	1432	1860	.	+	.	ID=gene-C9E96_RS02300;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=C9E96_RS02300;old_locus_tag=C9E96_02335
NZ_PYJX01000037.1	Protein Homology	CDS	1432	1860	.	+	0	ID=cds-WP_001085926.1;Parent=gene-C9E96_RS02300;Dbxref=GenBank:WP_001085926.1;Name=WP_001085926.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006121495.1;locus_tag=C9E96_RS02300;product=50S ribosomal protein L11;protein_id=WP_001085926.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	1864	2568	.	+	.	ID=gene-C9E96_RS02305;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=C9E96_RS02305;old_locus_tag=C9E96_02340
NZ_PYJX01000037.1	Protein Homology	CDS	1864	2568	.	+	0	ID=cds-WP_001096676.1;Parent=gene-C9E96_RS02305;Dbxref=GenBank:WP_001096676.1;Name=WP_001096676.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0015934;gbkey=CDS;gene=rplA;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463019.1;locus_tag=C9E96_RS02305;product=50S ribosomal protein L1;protein_id=WP_001096676.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	2988	3485	.	+	.	ID=gene-C9E96_RS02310;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=C9E96_RS02310;old_locus_tag=C9E96_02350
NZ_PYJX01000037.1	Protein Homology	CDS	2988	3485	.	+	0	ID=cds-WP_001207203.1;Parent=gene-C9E96_RS02310;Dbxref=GenBank:WP_001207203.1;Name=WP_001207203.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002438625.1;locus_tag=C9E96_RS02310;product=50S ribosomal protein L10;protein_id=WP_001207203.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	3552	3917	.	+	.	ID=gene-C9E96_RS02315;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=C9E96_RS02315;old_locus_tag=C9E96_02355
NZ_PYJX01000037.1	Protein Homology	CDS	3552	3917	.	+	0	ID=cds-WP_000028882.1;Parent=gene-C9E96_RS02315;Dbxref=GenBank:WP_000028882.1;Name=WP_000028882.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplL;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122872.1;locus_tag=C9E96_RS02315;product=50S ribosomal protein L7/L12;protein_id=WP_000028882.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	4235	8263	.	+	.	ID=gene-C9E96_RS02320;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=C9E96_RS02320;old_locus_tag=C9E96_02360
NZ_PYJX01000037.1	Protein Homology	CDS	4235	8263	.	+	0	ID=cds-WP_000263105.1;Parent=gene-C9E96_RS02320;Dbxref=GenBank:WP_000263105.1;Name=WP_000263105.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoB;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004870488.1;locus_tag=C9E96_RS02320;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_000263105.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	8340	12563	.	+	.	ID=gene-C9E96_RS02325;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=C9E96_RS02325;old_locus_tag=C9E96_02365
NZ_PYJX01000037.1	Protein Homology	CDS	8340	12563	.	+	0	ID=cds-WP_000653965.1;Parent=gene-C9E96_RS02325;Dbxref=GenBank:WP_000653965.1;Name=WP_000653965.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoC;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463023.1;locus_tag=C9E96_RS02325;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_000653965.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	12605	12931	.	+	.	ID=gene-C9E96_RS02330;Name=C9E96_RS02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02330;old_locus_tag=C9E96_02370
NZ_PYJX01000037.1	Protein Homology	CDS	12605	12931	.	+	0	ID=cds-WP_077905253.1;Parent=gene-C9E96_RS02330;Dbxref=GenBank:WP_077905253.1;Name=WP_077905253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015675457.1;locus_tag=C9E96_RS02330;product=hypothetical protein;protein_id=WP_077905253.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	pseudogene	12933	13275	.	-	.	ID=gene-C9E96_RS02335;Name=C9E96_RS02335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS02335;old_locus_tag=C9E96_02375;pseudo=true
NZ_PYJX01000037.1	Protein Homology	CDS	12933	13275	.	-	0	ID=cds-C9E96_RS02335;Parent=gene-C9E96_RS02335;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463025.1;locus_tag=C9E96_RS02335;product=cytoplasmic protein;pseudo=true;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	13656	14684	.	+	.	ID=gene-C9E96_RS02345;Name=C9E96_RS02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02345;old_locus_tag=C9E96_02385
NZ_PYJX01000037.1	Protein Homology	CDS	13656	14684	.	+	0	ID=cds-WP_000400592.1;Parent=gene-C9E96_RS02345;Dbxref=GenBank:WP_000400592.1;Name=WP_000400592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000400600.1;locus_tag=C9E96_RS02345;product=type III secretion system effector arginine glycosyltransferase SseK1;protein_id=WP_000400592.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	14905	16038	.	-	.	ID=gene-C9E96_RS02350;Name=thiH;gbkey=Gene;gene=thiH;gene_biotype=protein_coding;locus_tag=C9E96_RS02350;old_locus_tag=C9E96_02390
NZ_PYJX01000037.1	Protein Homology	CDS	14905	16038	.	-	0	ID=cds-WP_080204095.1;Parent=gene-C9E96_RS02350;Dbxref=GenBank:WP_080204095.1;Name=WP_080204095.1;Ontology_term=GO:0009228,GO:0005506,GO:0016829,GO:0051539,GO:1904047;gbkey=CDS;gene=thiH;go_function=iron ion binding|0005506||IEA,lyase activity|0016829||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463028.1;locus_tag=C9E96_RS02350;product=2-iminoacetate synthase ThiH;protein_id=WP_080204095.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	16035	16805	.	-	.	ID=gene-C9E96_RS02355;Name=thiG;gbkey=Gene;gene=thiG;gene_biotype=protein_coding;locus_tag=C9E96_RS02355;old_locus_tag=C9E96_02395
NZ_PYJX01000037.1	Protein Homology	CDS	16035	16805	.	-	0	ID=cds-WP_080204094.1;Parent=gene-C9E96_RS02355;Dbxref=GenBank:WP_080204094.1;Name=WP_080204094.1;gbkey=CDS;gene=thiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463029.1;locus_tag=C9E96_RS02355;product=thiazole synthase;protein_id=WP_080204094.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	16807	17007	.	-	.	ID=gene-C9E96_RS02360;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=C9E96_RS02360;old_locus_tag=C9E96_02400
NZ_PYJX01000037.1	Protein Homology	CDS	16807	17007	.	-	0	ID=cds-WP_080204093.1;Parent=gene-C9E96_RS02360;Dbxref=GenBank:WP_080204093.1;Name=WP_080204093.1;Ontology_term=GO:0009228,GO:0003824;gbkey=CDS;gene=thiS;go_function=catalytic activity|0003824||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463030.1;locus_tag=C9E96_RS02360;product=sulfur carrier protein ThiS;protein_id=WP_080204093.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	16988	17746	.	-	.	ID=gene-C9E96_RS02365;Name=C9E96_RS02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02365;old_locus_tag=C9E96_02405
NZ_PYJX01000037.1	Protein Homology	CDS	16988	17746	.	-	0	ID=cds-WP_001627473.1;Parent=gene-C9E96_RS02365;Dbxref=GenBank:WP_001627473.1;Name=WP_001627473.1;Ontology_term=GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463031.1;locus_tag=C9E96_RS02365;product=HesA/MoeB/ThiF family protein;protein_id=WP_001627473.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	17739	18374	.	-	.	ID=gene-C9E96_RS02370;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=C9E96_RS02370;old_locus_tag=C9E96_02410
NZ_PYJX01000037.1	Protein Homology	CDS	17739	18374	.	-	0	ID=cds-WP_135493803.1;Parent=gene-C9E96_RS02370;Dbxref=GenBank:WP_135493803.1;Name=WP_135493803.1;Ontology_term=GO:0009228,GO:0004789;gbkey=CDS;gene=thiE;go_function=thiamine-phosphate diphosphorylase activity|0004789||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463032.1;locus_tag=C9E96_RS02370;product=thiamine phosphate synthase;protein_id=WP_135493803.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	18374	20269	.	-	.	ID=gene-C9E96_RS02375;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=C9E96_RS02375;old_locus_tag=C9E96_02415
NZ_PYJX01000037.1	Protein Homology	CDS	18374	20269	.	-	0	ID=cds-WP_080204091.1;Parent=gene-C9E96_RS02375;Dbxref=GenBank:WP_080204091.1;Name=WP_080204091.1;Ontology_term=GO:0009228,GO:0051536;gbkey=CDS;gene=thiC;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463033.1;locus_tag=C9E96_RS02375;product=phosphomethylpyrimidine synthase ThiC;protein_id=WP_080204091.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	20633	21121	.	-	.	ID=gene-C9E96_RS02380;Name=rsd;gbkey=Gene;gene=rsd;gene_biotype=protein_coding;locus_tag=C9E96_RS02380;old_locus_tag=C9E96_02420
NZ_PYJX01000037.1	Protein Homology	CDS	20633	21121	.	-	0	ID=cds-WP_000934315.1;Parent=gene-C9E96_RS02380;Dbxref=GenBank:WP_000934315.1;Name=WP_000934315.1;Ontology_term=GO:0006355;gbkey=CDS;gene=rsd;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463034.1;locus_tag=C9E96_RS02380;product=sigma D regulator;protein_id=WP_000934315.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	21214	21987	.	+	.	ID=gene-C9E96_RS02385;Name=nudC;gbkey=Gene;gene=nudC;gene_biotype=protein_coding;locus_tag=C9E96_RS02385;old_locus_tag=C9E96_02425
NZ_PYJX01000037.1	Protein Homology	CDS	21214	21987	.	+	0	ID=cds-WP_000373960.1;Parent=gene-C9E96_RS02385;Dbxref=GenBank:WP_000373960.1;Name=WP_000373960.1;Ontology_term=GO:0000210,GO:0016787;gbkey=CDS;gene=nudC;go_function=NAD+ diphosphatase activity|0000210||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463035.1;locus_tag=C9E96_RS02385;product=NAD(+) diphosphatase;protein_id=WP_000373960.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	22028	23092	.	+	.	ID=gene-C9E96_RS02390;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=C9E96_RS02390;old_locus_tag=C9E96_02430
NZ_PYJX01000037.1	Protein Homology	CDS	22028	23092	.	+	0	ID=cds-WP_000137620.1;Parent=gene-C9E96_RS02390;Dbxref=GenBank:WP_000137620.1;Name=WP_000137620.1;Ontology_term=GO:0006779,GO:0004853;gbkey=CDS;gene=hemE;go_function=uroporphyrinogen decarboxylase activity|0004853||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463036.2;locus_tag=C9E96_RS02390;product=uroporphyrinogen decarboxylase;protein_id=WP_000137620.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	23102	23773	.	+	.	ID=gene-C9E96_RS02395;Name=nfi;gbkey=Gene;gene=nfi;gene_biotype=protein_coding;locus_tag=C9E96_RS02395;old_locus_tag=C9E96_02435
NZ_PYJX01000037.1	Protein Homology	CDS	23102	23773	.	+	0	ID=cds-WP_000362359.1;Parent=gene-C9E96_RS02395;Dbxref=GenBank:WP_000362359.1;Name=WP_000362359.1;Note=cleaves DNA at apurinic or apyrimidinic sites;Ontology_term=GO:0006281,GO:0004519;gbkey=CDS;gene=nfi;go_function=endonuclease activity|0004519||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463037.1;locus_tag=C9E96_RS02395;product=deoxyribonuclease V;protein_id=WP_000362359.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	23815	24405	.	+	.	ID=gene-C9E96_RS02400;Name=C9E96_RS02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02400;old_locus_tag=C9E96_02440
NZ_PYJX01000037.1	Protein Homology	CDS	23815	24405	.	+	0	ID=cds-WP_000940092.1;Parent=gene-C9E96_RS02400;Dbxref=GenBank:WP_000940092.1;Name=WP_000940092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463038.1;locus_tag=C9E96_RS02400;product=YjaG family protein;protein_id=WP_000940092.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	24592	24864	.	+	.	ID=gene-C9E96_RS02405;Name=hupA;gbkey=Gene;gene=hupA;gene_biotype=protein_coding;locus_tag=C9E96_RS02405;old_locus_tag=C9E96_02445
NZ_PYJX01000037.1	Protein Homology	CDS	24592	24864	.	+	0	ID=cds-WP_001044509.1;Parent=gene-C9E96_RS02405;Dbxref=GenBank:WP_001044509.1;Name=WP_001044509.1;gbkey=CDS;gene=hupA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017460010.1;locus_tag=C9E96_RS02405;product=nucleoid-associated protein HU-alpha;protein_id=WP_001044509.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	24876	25568	.	+	.	ID=gene-C9E96_RS02410;Name=C9E96_RS02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02410;old_locus_tag=C9E96_02450
NZ_PYJX01000037.1	Protein Homology	CDS	24876	25568	.	+	0	ID=cds-WP_001083931.1;Parent=gene-C9E96_RS02410;Dbxref=GenBank:WP_001083931.1;Name=WP_001083931.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463040.1;locus_tag=C9E96_RS02410;product=DUF1481 domain-containing protein;protein_id=WP_001083931.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	25610	26065	.	-	.	ID=gene-C9E96_RS02415;Name=zraP;gbkey=Gene;gene=zraP;gene_biotype=protein_coding;locus_tag=C9E96_RS02415;old_locus_tag=C9E96_02455
NZ_PYJX01000037.1	Protein Homology	CDS	25610	26065	.	-	0	ID=cds-WP_080204090.1;Parent=gene-C9E96_RS02415;Dbxref=GenBank:WP_080204090.1;Name=WP_080204090.1;gbkey=CDS;gene=zraP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463041.1;locus_tag=C9E96_RS02415;product=zinc resistance sensor/chaperone ZraP;protein_id=WP_080204090.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	26319	27731	.	+	.	ID=gene-C9E96_RS02420;Name=zraS;gbkey=Gene;gene=zraS;gene_biotype=protein_coding;locus_tag=C9E96_RS02420;old_locus_tag=C9E96_02460
NZ_PYJX01000037.1	Protein Homology	CDS	26319	27731	.	+	0	ID=cds-WP_080204096.1;Parent=gene-C9E96_RS02420;Dbxref=GenBank:WP_080204096.1;Name=WP_080204096.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155;gbkey=CDS;gene=zraS;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463042.1;locus_tag=C9E96_RS02420;product=two-component system sensor histidine kinase ZraS;protein_id=WP_080204096.1;transl_table=11
NZ_PYJX01000037.1	RefSeq	gene	27737	28896	.	+	.	ID=gene-C9E96_RS02425;Name=zraR;end_range=28896,.;gbkey=Gene;gene=zraR;gene_biotype=protein_coding;locus_tag=C9E96_RS02425;old_locus_tag=C9E96_02465;partial=true
NZ_PYJX01000037.1	Protein Homology	CDS	27737	28896	.	+	0	ID=cds-WP_245306422.1;Parent=gene-C9E96_RS02425;Dbxref=GenBank:WP_245306422.1;Name=WP_245306422.1;Ontology_term=GO:0000160,GO:0006355,GO:0043565;end_range=28896,.;gbkey=CDS;gene=zraR;go_function=sequence-specific DNA binding|0043565||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463043.1;locus_tag=C9E96_RS02425;partial=true;product=sigma-54-dependent response regulator transcription factor ZraR;protein_id=WP_245306422.1;transl_table=11
##sequence-region NZ_PYJX01000185.1 1 28789
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000185.1	RefSeq	region	1	28789	.	+	.	ID=NZ_PYJX01000185.1:1..28789;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000185.1	RefSeq	gene	1	928	.	-	.	ID=gene-C9E96_RS17420;Name=cadB;gbkey=Gene;gene=cadB;gene_biotype=protein_coding;locus_tag=C9E96_RS17420;old_locus_tag=C9E96_17870;partial=true;start_range=.,1
NZ_PYJX01000185.1	Protein Homology	CDS	1	928	.	-	0	ID=cds-WP_135494451.1;Parent=gene-C9E96_RS17420;Dbxref=GenBank:WP_135494451.1;Name=WP_135494451.1;Ontology_term=GO:0043872;gbkey=CDS;gene=cadB;go_function=lysine:cadaverine antiporter activity|0043872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461493.1;locus_tag=C9E96_RS17420;partial=true;product=cadaverine/lysine antiporter;protein_id=WP_135494451.1;start_range=.,1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	1289	2833	.	-	.	ID=gene-C9E96_RS17425;Name=cadC;gbkey=Gene;gene=cadC;gene_biotype=protein_coding;locus_tag=C9E96_RS17425;old_locus_tag=C9E96_17875
NZ_PYJX01000185.1	Protein Homology	CDS	1289	2833	.	-	0	ID=cds-WP_135369890.1;Parent=gene-C9E96_RS17425;Dbxref=GenBank:WP_135369890.1;Name=WP_135369890.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=cadC;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461492.1;locus_tag=C9E96_RS17425;product=lysine decarboxylation/transport transcriptional activator CadC;protein_id=WP_135369890.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	3015	4205	.	-	.	ID=gene-C9E96_RS17430;Name=hmpA;gbkey=Gene;gene=hmpA;gene_biotype=protein_coding;locus_tag=C9E96_RS17430;old_locus_tag=C9E96_17880
NZ_PYJX01000185.1	Protein Homology	CDS	3015	4205	.	-	0	ID=cds-WP_000883145.1;Parent=gene-C9E96_RS17430;Dbxref=GenBank:WP_000883145.1;Name=WP_000883145.1;Ontology_term=GO:0051409,GO:0008941,GO:0019825,GO:0020037,GO:0071949;gbkey=CDS;gene=hmpA;go_function=nitric oxide dioxygenase NAD(P)H activity|0008941||IEA,oxygen binding|0019825||IEA,heme binding|0020037||IEA,FAD binding|0071949||IEA;go_process=response to nitrosative stress|0051409||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461491.1;locus_tag=C9E96_RS17430;product=NO-inducible flavohemoprotein;protein_id=WP_000883145.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	4530	5783	.	+	.	ID=gene-C9E96_RS17435;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=C9E96_RS17435;old_locus_tag=C9E96_17885
NZ_PYJX01000185.1	Protein Homology	CDS	4530	5783	.	+	0	ID=cds-WP_000919178.1;Parent=gene-C9E96_RS17435;Dbxref=GenBank:WP_000919178.1;Name=WP_000919178.1;Ontology_term=GO:0019264,GO:0004372,GO:0008270,GO:0030170,GO:0070905;gbkey=CDS;gene=glyA;go_function=glycine hydroxymethyltransferase activity|0004372||IEA,zinc ion binding|0008270||IEA,pyridoxal phosphate binding|0030170||IEA,serine binding|0070905||IEA;go_process=glycine biosynthetic process from serine|0019264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019077397.1;locus_tag=C9E96_RS17435;product=serine hydroxymethyltransferase;protein_id=WP_000919178.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	5979	7118	.	+	.	ID=gene-C9E96_RS17440;Name=C9E96_RS17440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17440;old_locus_tag=C9E96_17890
NZ_PYJX01000185.1	Protein Homology	CDS	5979	7118	.	+	0	ID=cds-WP_135494453.1;Parent=gene-C9E96_RS17440;Dbxref=GenBank:WP_135494453.1;Name=WP_135494453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461489.1;locus_tag=C9E96_RS17440;product=3-phenylpropionate MFS transporter;protein_id=WP_135494453.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	7113	8390	.	-	.	ID=gene-C9E96_RS17445;Name=csiE;gbkey=Gene;gene=csiE;gene_biotype=protein_coding;locus_tag=C9E96_RS17445;old_locus_tag=C9E96_17895
NZ_PYJX01000185.1	Protein Homology	CDS	7113	8390	.	-	0	ID=cds-WP_000982963.1;Parent=gene-C9E96_RS17445;Dbxref=GenBank:WP_000982963.1;Name=WP_000982963.1;gbkey=CDS;gene=csiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461488.1;locus_tag=C9E96_RS17445;product=stationary phase inducible protein CsiE;protein_id=WP_000982963.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	8516	9154	.	+	.	ID=gene-C9E96_RS17450;Name=C9E96_RS17450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17450;old_locus_tag=C9E96_17900
NZ_PYJX01000185.1	Protein Homology	CDS	8516	9154	.	+	0	ID=cds-WP_023993586.1;Parent=gene-C9E96_RS17450;Dbxref=GenBank:WP_023993586.1;Name=WP_023993586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461487.1;locus_tag=C9E96_RS17450;product=DUF1007 family protein;protein_id=WP_023993586.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	9145	10131	.	+	.	ID=gene-C9E96_RS17455;Name=C9E96_RS17455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17455;old_locus_tag=C9E96_17905
NZ_PYJX01000185.1	Protein Homology	CDS	9145	10131	.	+	0	ID=cds-WP_023182384.1;Parent=gene-C9E96_RS17455;Dbxref=GenBank:WP_023182384.1;Name=WP_023182384.1;Ontology_term=GO:0035444,GO:0015099,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=nickel cation transmembrane transporter activity|0015099||IEA;go_process=nickel cation transmembrane transport|0035444||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461486.1;locus_tag=C9E96_RS17455;product=nickel/cobalt transporter;protein_id=WP_023182384.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	10132	11145	.	-	.	ID=gene-C9E96_RS17460;Name=asrC;gbkey=Gene;gene=asrC;gene_biotype=protein_coding;locus_tag=C9E96_RS17460;old_locus_tag=C9E96_17910
NZ_PYJX01000185.1	Protein Homology	CDS	10132	11145	.	-	0	ID=cds-WP_000020685.1;Parent=gene-C9E96_RS17460;Dbxref=GenBank:WP_000020685.1;Name=WP_000020685.1;Ontology_term=GO:0006790,GO:0016002;gbkey=CDS;gene=asrC;go_function=sulfite reductase activity|0016002||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461485.1;locus_tag=C9E96_RS17460;product=sulfite reductase subunit C;protein_id=WP_000020685.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	11156	11974	.	-	.	ID=gene-C9E96_RS17465;Name=asrB;gbkey=Gene;gene=asrB;gene_biotype=protein_coding;locus_tag=C9E96_RS17465;old_locus_tag=C9E96_17915
NZ_PYJX01000185.1	Protein Homology	CDS	11156	11974	.	-	0	ID=cds-WP_135494455.1;Parent=gene-C9E96_RS17465;Dbxref=GenBank:WP_135494455.1;Name=WP_135494455.1;Ontology_term=GO:0006790,GO:0009055,GO:0016002;gbkey=CDS;gene=asrB;go_function=electron transfer activity|0009055||IEA,sulfite reductase activity|0016002||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461484.1;locus_tag=C9E96_RS17465;product=anaerobic sulfite reductase subunit AsrB;protein_id=WP_135494455.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	pseudogene	11978	13020	.	-	.	ID=gene-C9E96_RS17470;Name=asrA;gbkey=Gene;gene=asrA;gene_biotype=pseudogene;locus_tag=C9E96_RS17470;old_locus_tag=C9E96_17920;pseudo=true
NZ_PYJX01000185.1	Protein Homology	CDS	11978	13020	.	-	0	ID=cds-C9E96_RS17470;Parent=gene-C9E96_RS17470;Note=frameshifted;Ontology_term=GO:0006790,GO:0009055,GO:0016002;gbkey=CDS;gene=asrA;go_function=electron transfer activity|0009055||IEA,sulfite reductase activity|0016002||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461483.1;locus_tag=C9E96_RS17470;product=anaerobic sulfite reductase subunit AsrA;pseudo=true;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	13202	14080	.	-	.	ID=gene-C9E96_RS17475;Name=C9E96_RS17475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17475;old_locus_tag=C9E96_17925
NZ_PYJX01000185.1	Protein Homology	CDS	13202	14080	.	-	0	ID=cds-WP_000174939.1;Parent=gene-C9E96_RS17475;Dbxref=GenBank:WP_000174939.1;Name=WP_000174939.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461482.1;locus_tag=C9E96_RS17475;product=alpha/beta hydrolase;protein_id=WP_000174939.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	14225	15028	.	-	.	ID=gene-C9E96_RS17480;Name=suhB;gbkey=Gene;gene=suhB;gene_biotype=protein_coding;locus_tag=C9E96_RS17480;old_locus_tag=C9E96_17930
NZ_PYJX01000185.1	Protein Homology	CDS	14225	15028	.	-	0	ID=cds-WP_000553467.1;Parent=gene-C9E96_RS17480;Dbxref=GenBank:WP_000553467.1;Name=WP_000553467.1;Ontology_term=GO:0046854,GO:0008934;gbkey=CDS;gene=suhB;go_function=inositol monophosphate 1-phosphatase activity|0008934||IEA;go_process=phosphatidylinositol phosphate biosynthetic process|0046854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000553460.1;locus_tag=C9E96_RS17480;product=inositol-1-monophosphatase;protein_id=WP_000553467.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	15147	15878	.	+	.	ID=gene-C9E96_RS17485;Name=trmJ;gbkey=Gene;gene=trmJ;gene_biotype=protein_coding;locus_tag=C9E96_RS17485;old_locus_tag=C9E96_17935
NZ_PYJX01000185.1	Protein Homology	CDS	15147	15878	.	+	0	ID=cds-WP_000940032.1;Parent=gene-C9E96_RS17485;Dbxref=GenBank:WP_000940032.1;Name=WP_000940032.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;gene=trmJ;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461480.1;locus_tag=C9E96_RS17485;product=tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ;protein_id=WP_000940032.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	16038	16532	.	+	.	ID=gene-C9E96_RS17490;Name=iscR;gbkey=Gene;gene=iscR;gene_biotype=protein_coding;locus_tag=C9E96_RS17490;old_locus_tag=C9E96_17940
NZ_PYJX01000185.1	Protein Homology	CDS	16038	16532	.	+	0	ID=cds-WP_001241346.1;Parent=gene-C9E96_RS17490;Dbxref=GenBank:WP_001241346.1;Name=WP_001241346.1;gbkey=CDS;gene=iscR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001241352.1;locus_tag=C9E96_RS17490;product=Fe-S cluster assembly transcriptional regulator IscR;protein_id=WP_001241346.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	16713	17927	.	+	.	ID=gene-C9E96_RS17495;Name=iscS;gbkey=Gene;gene=iscS;gene_biotype=protein_coding;locus_tag=C9E96_RS17495;old_locus_tag=C9E96_17945
NZ_PYJX01000185.1	Protein Homology	CDS	16713	17927	.	+	0	ID=cds-WP_000775263.1;Parent=gene-C9E96_RS17495;Dbxref=GenBank:WP_000775263.1;Name=WP_000775263.1;gbkey=CDS;gene=iscS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017459011.1;locus_tag=C9E96_RS17495;product=cysteine desulfurase;protein_id=WP_000775263.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	17955	18341	.	+	.	ID=gene-C9E96_RS17500;Name=iscU;gbkey=Gene;gene=iscU;gene_biotype=protein_coding;locus_tag=C9E96_RS17500;old_locus_tag=C9E96_17950
NZ_PYJX01000185.1	Protein Homology	CDS	17955	18341	.	+	0	ID=cds-WP_000331704.1;Parent=gene-C9E96_RS17500;Dbxref=GenBank:WP_000331704.1;Name=WP_000331704.1;Ontology_term=GO:0016226,GO:0005198,GO:0005506,GO:0051536;gbkey=CDS;gene=iscU;go_function=structural molecule activity|0005198||IEA,iron ion binding|0005506||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000331707.1;locus_tag=C9E96_RS17500;product=Fe-S cluster assembly scaffold IscU;protein_id=WP_000331704.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	18370	18693	.	+	.	ID=gene-C9E96_RS17505;Name=iscA;gbkey=Gene;gene=iscA;gene_biotype=protein_coding;locus_tag=C9E96_RS17505;old_locus_tag=C9E96_17955
NZ_PYJX01000185.1	Protein Homology	CDS	18370	18693	.	+	0	ID=cds-WP_000028952.1;Parent=gene-C9E96_RS17505;Dbxref=GenBank:WP_000028952.1;Name=WP_000028952.1;gbkey=CDS;gene=iscA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461476.1;locus_tag=C9E96_RS17505;product=iron-sulfur cluster assembly protein IscA;protein_id=WP_000028952.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	18889	19404	.	+	.	ID=gene-C9E96_RS17510;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=C9E96_RS17510;old_locus_tag=C9E96_17960
NZ_PYJX01000185.1	Protein Homology	CDS	18889	19404	.	+	0	ID=cds-WP_135369891.1;Parent=gene-C9E96_RS17510;Dbxref=GenBank:WP_135369891.1;Name=WP_135369891.1;Ontology_term=GO:0051604,GO:0051087;gbkey=CDS;gene=hscB;go_function=protein-folding chaperone binding|0051087||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461475.1;locus_tag=C9E96_RS17510;product=co-chaperone HscB;protein_id=WP_135369891.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	19417	21267	.	+	.	ID=gene-C9E96_RS17515;Name=hscA;gbkey=Gene;gene=hscA;gene_biotype=protein_coding;locus_tag=C9E96_RS17515;old_locus_tag=C9E96_17965
NZ_PYJX01000185.1	Protein Homology	CDS	19417	21267	.	+	0	ID=cds-WP_001196652.1;Parent=gene-C9E96_RS17515;Dbxref=GenBank:WP_001196652.1;Name=WP_001196652.1;Ontology_term=GO:0006457,GO:0016226,GO:0005515,GO:0005524,GO:0016887;gbkey=CDS;gene=hscA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001559634.1;locus_tag=C9E96_RS17515;product=Fe-S protein assembly chaperone HscA;protein_id=WP_001196652.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	21269	21604	.	+	.	ID=gene-C9E96_RS17520;Name=fdx;gbkey=Gene;gene=fdx;gene_biotype=protein_coding;locus_tag=C9E96_RS17520;old_locus_tag=C9E96_17970
NZ_PYJX01000185.1	Protein Homology	CDS	21269	21604	.	+	0	ID=cds-WP_001124466.1;Parent=gene-C9E96_RS17520;Dbxref=GenBank:WP_001124466.1;Name=WP_001124466.1;Ontology_term=GO:0016226,GO:0009055,GO:0051537;gbkey=CDS;gene=fdx;go_function=electron transfer activity|0009055||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015683702.1;locus_tag=C9E96_RS17520;product=ISC system 2Fe-2S type ferredoxin;protein_id=WP_001124466.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	21616	21816	.	+	.	ID=gene-C9E96_RS17525;Name=iscX;gbkey=Gene;gene=iscX;gene_biotype=protein_coding;locus_tag=C9E96_RS17525;old_locus_tag=C9E96_17975
NZ_PYJX01000185.1	Protein Homology	CDS	21616	21816	.	+	0	ID=cds-WP_023179645.1;Parent=gene-C9E96_RS17525;Dbxref=GenBank:WP_023179645.1;Name=WP_023179645.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=iscX;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004104502.1;locus_tag=C9E96_RS17525;product=Fe-S cluster assembly protein IscX;protein_id=WP_023179645.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	22063	23346	.	+	.	ID=gene-C9E96_RS17530;Name=pepB;gbkey=Gene;gene=pepB;gene_biotype=protein_coding;locus_tag=C9E96_RS17530;old_locus_tag=C9E96_17985
NZ_PYJX01000185.1	Protein Homology	CDS	22063	23346	.	+	0	ID=cds-WP_000133541.1;Parent=gene-C9E96_RS17530;Dbxref=GenBank:WP_000133541.1;Name=WP_000133541.1;Ontology_term=GO:0006508,GO:0019538,GO:0030145,GO:0070006;gbkey=CDS;gene=pepB;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA,protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461471.1;locus_tag=C9E96_RS17530;product=aminopeptidase PepB;protein_id=WP_000133541.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	23456	24241	.	+	.	ID=gene-C9E96_RS17535;Name=sseB;gbkey=Gene;gene=sseB;gene_biotype=protein_coding;locus_tag=C9E96_RS17535;old_locus_tag=C9E96_17995
NZ_PYJX01000185.1	Protein Homology	CDS	23456	24241	.	+	0	ID=cds-WP_165450957.1;Parent=gene-C9E96_RS17535;Dbxref=GenBank:WP_165450957.1;Name=WP_165450957.1;gbkey=CDS;gene=sseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311415.2;locus_tag=C9E96_RS17535;product=enhanced serine sensitivity protein SseB;protein_id=WP_165450957.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	24278	24394	.	-	.	ID=gene-C9E96_RS24285;Name=timP;gbkey=Gene;gene=timP;gene_biotype=protein_coding;locus_tag=C9E96_RS24285
NZ_PYJX01000185.1	Protein Homology	CDS	24278	24394	.	-	0	ID=cds-WP_242617172.1;Parent=gene-C9E96_RS24285;Dbxref=GenBank:WP_242617172.1;Name=WP_242617172.1;gbkey=CDS;gene=timP;inference=COORDINATES: protein motif:HMM:NF040796.1;locus_tag=C9E96_RS24285;product=small toxic inner membrane protein TimP;protein_id=WP_242617172.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	24810	25478	.	-	.	ID=gene-C9E96_RS17545;Name=C9E96_RS17545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17545;old_locus_tag=C9E96_18005
NZ_PYJX01000185.1	Protein Homology	CDS	24810	25478	.	-	0	ID=cds-WP_080203856.1;Parent=gene-C9E96_RS17545;Dbxref=GenBank:WP_080203856.1;Name=WP_080203856.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461469.1;locus_tag=C9E96_RS17545;product=DUF5066 family protein;protein_id=WP_080203856.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	25521	25745	.	+	.	ID=gene-C9E96_RS23985;Name=C9E96_RS23985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23985
NZ_PYJX01000185.1	Protein Homology	CDS	25521	25745	.	+	0	ID=cds-WP_024133232.1;Parent=gene-C9E96_RS23985;Dbxref=GenBank:WP_024133232.1;Name=WP_024133232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014344128.1;locus_tag=C9E96_RS23985;product=hypothetical protein;protein_id=WP_024133232.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	25725	26567	.	-	.	ID=gene-C9E96_RS17550;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=C9E96_RS17550;old_locus_tag=C9E96_18010
NZ_PYJX01000185.1	Protein Homology	CDS	25725	26567	.	-	0	ID=cds-WP_000205241.1;Parent=gene-C9E96_RS17550;Dbxref=GenBank:WP_000205241.1;Name=WP_000205241.1;Ontology_term=GO:0004792;gbkey=CDS;gene=sseA;go_function=thiosulfate-cyanide sulfurtransferase activity|0004792||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461468.1;locus_tag=C9E96_RS17550;product=3-mercaptopyruvate sulfurtransferase;protein_id=WP_000205241.1;transl_table=11
NZ_PYJX01000185.1	RefSeq	gene	26776	28789	.	+	.	ID=gene-C9E96_RS17555;Name=C9E96_RS17555;end_range=28789,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17555;old_locus_tag=C9E96_18015;partial=true
NZ_PYJX01000185.1	Protein Homology	CDS	26776	28789	.	+	0	ID=cds-WP_135494457.1;Parent=gene-C9E96_RS17555;Dbxref=GenBank:WP_135494457.1;Name=WP_135494457.1;Ontology_term=GO:0004866;end_range=28789,.;gbkey=CDS;go_function=endopeptidase inhibitor activity|0004866||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461467.1;locus_tag=C9E96_RS17555;partial=true;product=MG2 domain-containing protein;protein_id=WP_135494457.1;transl_table=11
##sequence-region NZ_PYJX01000106.1 1 28704
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000106.1	RefSeq	region	1	28704	.	+	.	ID=NZ_PYJX01000106.1:1..28704;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000106.1	RefSeq	gene	1	534	.	-	.	ID=gene-C9E96_RS08910;Name=C9E96_RS08910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08910;old_locus_tag=C9E96_09100;partial=true;start_range=.,1
NZ_PYJX01000106.1	Protein Homology	CDS	1	534	.	-	0	ID=cds-WP_023139336.1;Parent=gene-C9E96_RS08910;Dbxref=GenBank:WP_023139336.1;Name=WP_023139336.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460025.1;locus_tag=C9E96_RS08910;partial=true;product=tail fiber assembly protein;protein_id=WP_023139336.1;start_range=.,1;transl_table=11
NZ_PYJX01000106.1	RefSeq	pseudogene	534	1406	.	-	.	ID=gene-C9E96_RS24195;Name=C9E96_RS24195;end_range=1406,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24195;partial=true;pseudo=true
NZ_PYJX01000106.1	Protein Homology	CDS	534	1406	.	-	0	ID=cds-C9E96_RS24195;Parent=gene-C9E96_RS24195;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1406,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461524.1;locus_tag=C9E96_RS24195;partial=true;product=phage tail protein;pseudo=true;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	1975	2577	.	-	.	ID=gene-C9E96_RS08920;Name=C9E96_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08920;old_locus_tag=C9E96_09110
NZ_PYJX01000106.1	Protein Homology	CDS	1975	2577	.	-	0	ID=cds-WP_001181747.1;Parent=gene-C9E96_RS08920;Dbxref=GenBank:WP_001181747.1;Name=WP_001181747.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001181748.1;locus_tag=C9E96_RS08920;product=DUF2612 domain-containing protein;protein_id=WP_001181747.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	2579	3820	.	-	.	ID=gene-C9E96_RS08925;Name=C9E96_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08925;old_locus_tag=C9E96_09115
NZ_PYJX01000106.1	Protein Homology	CDS	2579	3820	.	-	0	ID=cds-WP_135369809.1;Parent=gene-C9E96_RS08925;Dbxref=GenBank:WP_135369809.1;Name=WP_135369809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748481.1;locus_tag=C9E96_RS08925;product=baseplate J/gp47 family protein;protein_id=WP_135369809.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	3817	4173	.	-	.	ID=gene-C9E96_RS08930;Name=C9E96_RS08930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08930;old_locus_tag=C9E96_09120
NZ_PYJX01000106.1	Protein Homology	CDS	3817	4173	.	-	0	ID=cds-WP_001748483.1;Parent=gene-C9E96_RS08930;Dbxref=GenBank:WP_001748483.1;Name=WP_001748483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001191864.1;locus_tag=C9E96_RS08930;product=hypothetical protein;protein_id=WP_001748483.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	4186	4863	.	-	.	ID=gene-C9E96_RS08935;Name=C9E96_RS08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08935;old_locus_tag=C9E96_09125
NZ_PYJX01000106.1	Protein Homology	CDS	4186	4863	.	-	0	ID=cds-WP_135369808.1;Parent=gene-C9E96_RS08935;Dbxref=GenBank:WP_135369808.1;Name=WP_135369808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001534334.1;locus_tag=C9E96_RS08935;product=Gp138 family membrane-puncturing spike protein;protein_id=WP_135369808.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	4844	5713	.	-	.	ID=gene-C9E96_RS08940;Name=C9E96_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08940;old_locus_tag=C9E96_09130
NZ_PYJX01000106.1	Protein Homology	CDS	4844	5713	.	-	0	ID=cds-WP_135369807.1;Parent=gene-C9E96_RS08940;Dbxref=GenBank:WP_135369807.1;Name=WP_135369807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000122181.1;locus_tag=C9E96_RS08940;product=baseplate hub protein;protein_id=WP_135369807.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	5710	6012	.	-	.	ID=gene-C9E96_RS08945;Name=C9E96_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08945;old_locus_tag=C9E96_09135
NZ_PYJX01000106.1	Protein Homology	CDS	5710	6012	.	-	0	ID=cds-WP_001748486.1;Parent=gene-C9E96_RS08945;Dbxref=GenBank:WP_001748486.1;Name=WP_001748486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001534376.1;locus_tag=C9E96_RS08945;product=phage baseplate plug family protein;protein_id=WP_001748486.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	6012	6722	.	-	.	ID=gene-C9E96_RS08950;Name=C9E96_RS08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08950;old_locus_tag=C9E96_09140
NZ_PYJX01000106.1	Protein Homology	CDS	6012	6722	.	-	0	ID=cds-WP_001525483.1;Parent=gene-C9E96_RS08950;Dbxref=GenBank:WP_001525483.1;Name=WP_001525483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000010340.1;locus_tag=C9E96_RS08950;product=phage baseplate protein;protein_id=WP_001525483.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	6719	8890	.	-	.	ID=gene-C9E96_RS08955;Name=C9E96_RS08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08955;old_locus_tag=C9E96_09145
NZ_PYJX01000106.1	Protein Homology	CDS	6719	8890	.	-	0	ID=cds-WP_135494104.1;Parent=gene-C9E96_RS08955;Dbxref=GenBank:WP_135494104.1;Name=WP_135494104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000741777.1;locus_tag=C9E96_RS08955;product=transglycosylase SLT domain-containing protein;protein_id=WP_135494104.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	8874	9056	.	-	.	ID=gene-C9E96_RS08960;Name=C9E96_RS08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08960;old_locus_tag=C9E96_09150
NZ_PYJX01000106.1	Protein Homology	CDS	8874	9056	.	-	0	ID=cds-WP_000228831.1;Parent=gene-C9E96_RS08960;Dbxref=GenBank:WP_000228831.1;Name=WP_000228831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000228830.1;locus_tag=C9E96_RS08960;product=hypothetical protein;protein_id=WP_000228831.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	9098	9502	.	-	.	ID=gene-C9E96_RS08965;Name=C9E96_RS08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08965;old_locus_tag=C9E96_09155
NZ_PYJX01000106.1	Protein Homology	CDS	9098	9502	.	-	0	ID=cds-WP_023234167.1;Parent=gene-C9E96_RS08965;Dbxref=GenBank:WP_023234167.1;Name=WP_023234167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000101348.1;locus_tag=C9E96_RS08965;product=hypothetical protein;protein_id=WP_023234167.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	9502	9948	.	-	.	ID=gene-C9E96_RS08970;Name=C9E96_RS08970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08970;old_locus_tag=C9E96_09160
NZ_PYJX01000106.1	Protein Homology	CDS	9502	9948	.	-	0	ID=cds-WP_000016414.1;Parent=gene-C9E96_RS08970;Dbxref=GenBank:WP_000016414.1;Name=WP_000016414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000016417.1;locus_tag=C9E96_RS08970;product=phage tail fiber protein;protein_id=WP_000016414.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	9949	11433	.	-	.	ID=gene-C9E96_RS08975;Name=C9E96_RS08975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08975;old_locus_tag=C9E96_09165
NZ_PYJX01000106.1	Protein Homology	CDS	9949	11433	.	-	0	ID=cds-WP_053445470.1;Parent=gene-C9E96_RS08975;Dbxref=GenBank:WP_053445470.1;Name=WP_053445470.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748488.1;locus_tag=C9E96_RS08975;product=DUF3383 domain-containing protein;protein_id=WP_053445470.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	11414	11959	.	-	.	ID=gene-C9E96_RS08980;Name=C9E96_RS08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08980;old_locus_tag=C9E96_09170
NZ_PYJX01000106.1	Protein Homology	CDS	11414	11959	.	-	0	ID=cds-WP_135369805.1;Parent=gene-C9E96_RS08980;Dbxref=GenBank:WP_135369805.1;Name=WP_135369805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001525438.1;locus_tag=C9E96_RS08980;product=phage neck terminator protein;protein_id=WP_135369805.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	11944	12309	.	-	.	ID=gene-C9E96_RS08985;Name=C9E96_RS08985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08985;old_locus_tag=C9E96_09175
NZ_PYJX01000106.1	Protein Homology	CDS	11944	12309	.	-	0	ID=cds-WP_001748490.1;Parent=gene-C9E96_RS08985;Dbxref=GenBank:WP_001748490.1;Name=WP_001748490.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748490.1;locus_tag=C9E96_RS08985;product=hypothetical protein;protein_id=WP_001748490.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	12306	12890	.	-	.	ID=gene-C9E96_RS08990;Name=C9E96_RS08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08990;old_locus_tag=C9E96_09180
NZ_PYJX01000106.1	Protein Homology	CDS	12306	12890	.	-	0	ID=cds-WP_022742718.1;Parent=gene-C9E96_RS08990;Dbxref=GenBank:WP_022742718.1;Name=WP_022742718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000247610.1;locus_tag=C9E96_RS08990;product=hypothetical protein;protein_id=WP_022742718.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	12884	13339	.	-	.	ID=gene-C9E96_RS08995;Name=C9E96_RS08995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08995;old_locus_tag=C9E96_09185
NZ_PYJX01000106.1	Protein Homology	CDS	12884	13339	.	-	0	ID=cds-WP_001748492.1;Parent=gene-C9E96_RS08995;Dbxref=GenBank:WP_001748492.1;Name=WP_001748492.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000537613.1;locus_tag=C9E96_RS08995;product=DUF4054 domain-containing protein;protein_id=WP_001748492.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	13346	13693	.	-	.	ID=gene-C9E96_RS09000;Name=C9E96_RS09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09000;old_locus_tag=C9E96_09190
NZ_PYJX01000106.1	Protein Homology	CDS	13346	13693	.	-	0	ID=cds-WP_001748493.1;Parent=gene-C9E96_RS09000;Dbxref=GenBank:WP_001748493.1;Name=WP_001748493.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000829561.1;locus_tag=C9E96_RS09000;product=hypothetical protein;protein_id=WP_001748493.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	13697	14725	.	-	.	ID=gene-C9E96_RS09005;Name=C9E96_RS09005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09005;old_locus_tag=C9E96_09195
NZ_PYJX01000106.1	Protein Homology	CDS	13697	14725	.	-	0	ID=cds-WP_135494112.1;Parent=gene-C9E96_RS09005;Dbxref=GenBank:WP_135494112.1;Name=WP_135494112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001602004.1;locus_tag=C9E96_RS09005;product=DUF2184 domain-containing protein;protein_id=WP_135494112.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	14725	15207	.	-	.	ID=gene-C9E96_RS09010;Name=C9E96_RS09010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09010;old_locus_tag=C9E96_09200
NZ_PYJX01000106.1	Protein Homology	CDS	14725	15207	.	-	0	ID=cds-WP_135494106.1;Parent=gene-C9E96_RS09010;Dbxref=GenBank:WP_135494106.1;Name=WP_135494106.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001091400.1;locus_tag=C9E96_RS09010;product=structural cement protein Gp24;protein_id=WP_135494106.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	15209	16555	.	-	.	ID=gene-C9E96_RS09015;Name=C9E96_RS09015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09015;old_locus_tag=C9E96_09205
NZ_PYJX01000106.1	Protein Homology	CDS	15209	16555	.	-	0	ID=cds-WP_135494108.1;Parent=gene-C9E96_RS09015;Dbxref=GenBank:WP_135494108.1;Name=WP_135494108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748494.1;locus_tag=C9E96_RS09015;product=DUF2213 domain-containing protein;protein_id=WP_135494108.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	16552	17241	.	-	.	ID=gene-C9E96_RS09020;Name=C9E96_RS09020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09020;old_locus_tag=C9E96_09210
NZ_PYJX01000106.1	Protein Homology	CDS	16552	17241	.	-	0	ID=cds-WP_057519928.1;Parent=gene-C9E96_RS09020;Dbxref=GenBank:WP_057519928.1;Name=WP_057519928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000552018.1;locus_tag=C9E96_RS09020;product=phage head morphogenesis protein;protein_id=WP_057519928.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	17282	18802	.	-	.	ID=gene-C9E96_RS09025;Name=C9E96_RS09025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09025;old_locus_tag=C9E96_09215
NZ_PYJX01000106.1	Protein Homology	CDS	17282	18802	.	-	0	ID=cds-WP_135369804.1;Parent=gene-C9E96_RS09025;Dbxref=GenBank:WP_135369804.1;Name=WP_135369804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001534366.1;locus_tag=C9E96_RS09025;product=DUF1073 domain-containing protein;protein_id=WP_135369804.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	18802	20421	.	-	.	ID=gene-C9E96_RS09030;Name=C9E96_RS09030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09030;old_locus_tag=C9E96_09220
NZ_PYJX01000106.1	Protein Homology	CDS	18802	20421	.	-	0	ID=cds-WP_079898419.1;Parent=gene-C9E96_RS09030;Dbxref=GenBank:WP_079898419.1;Name=WP_079898419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001130781.1;locus_tag=C9E96_RS09030;product=TerL protein;protein_id=WP_079898419.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	20424	21053	.	-	.	ID=gene-C9E96_RS09035;Name=C9E96_RS09035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09035;old_locus_tag=C9E96_09225
NZ_PYJX01000106.1	Protein Homology	CDS	20424	21053	.	-	0	ID=cds-WP_080187690.1;Parent=gene-C9E96_RS09035;Dbxref=GenBank:WP_080187690.1;Name=WP_080187690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001118130.1;locus_tag=C9E96_RS09035;product=hypothetical protein;protein_id=WP_080187690.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	21123	21386	.	-	.	ID=gene-C9E96_RS09040;Name=C9E96_RS09040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09040;old_locus_tag=C9E96_09230
NZ_PYJX01000106.1	GeneMarkS-2+	CDS	21123	21386	.	-	0	ID=cds-WP_080176836.1;Parent=gene-C9E96_RS09040;Dbxref=GenBank:WP_080176836.1;Name=WP_080176836.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS09040;product=hypothetical protein;protein_id=WP_080176836.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	21586	22056	.	-	.	ID=gene-C9E96_RS09045;Name=C9E96_RS09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09045;old_locus_tag=C9E96_09235
NZ_PYJX01000106.1	Protein Homology	CDS	21586	22056	.	-	0	ID=cds-WP_088389689.1;Parent=gene-C9E96_RS09045;Dbxref=GenBank:WP_088389689.1;Name=WP_088389689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012601422.1;locus_tag=C9E96_RS09045;product=lysis protein;protein_id=WP_088389689.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	22157	22696	.	-	.	ID=gene-C9E96_RS09050;Name=C9E96_RS09050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09050;old_locus_tag=C9E96_09240
NZ_PYJX01000106.1	Protein Homology	CDS	22157	22696	.	-	0	ID=cds-WP_001534313.1;Parent=gene-C9E96_RS09050;Dbxref=GenBank:WP_001534313.1;Name=WP_001534313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001525444.1;locus_tag=C9E96_RS09050;product=lysozyme;protein_id=WP_001534313.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	22674	22976	.	-	.	ID=gene-C9E96_RS09055;Name=C9E96_RS09055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09055;old_locus_tag=C9E96_09245
NZ_PYJX01000106.1	Protein Homology	CDS	22674	22976	.	-	0	ID=cds-WP_001525456.1;Parent=gene-C9E96_RS09055;Dbxref=GenBank:WP_001525456.1;Name=WP_001525456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001674576.1;locus_tag=C9E96_RS09055;product=HP1 family phage holin;protein_id=WP_001525456.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	23168	23713	.	+	.	ID=gene-C9E96_RS09060;Name=C9E96_RS09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09060
NZ_PYJX01000106.1	GeneMarkS-2+	CDS	23168	23713	.	+	0	ID=cds-WP_130045103.1;Parent=gene-C9E96_RS09060;Dbxref=GenBank:WP_130045103.1;Name=WP_130045103.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS09060;product=DUF2441 domain-containing protein;protein_id=WP_130045103.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	23704	23910	.	-	.	ID=gene-C9E96_RS09065;Name=C9E96_RS09065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09065;old_locus_tag=C9E96_09250
NZ_PYJX01000106.1	Protein Homology	CDS	23704	23910	.	-	0	ID=cds-WP_058679888.1;Parent=gene-C9E96_RS09065;Dbxref=GenBank:WP_058679888.1;Name=WP_058679888.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001076799.1;locus_tag=C9E96_RS09065;product=hypothetical protein;protein_id=WP_058679888.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	24369	26150	.	+	.	ID=gene-C9E96_RS09070;Name=C9E96_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09070;old_locus_tag=C9E96_09255
NZ_PYJX01000106.1	Protein Homology	CDS	24369	26150	.	+	0	ID=cds-WP_088389688.1;Parent=gene-C9E96_RS09070;Dbxref=GenBank:WP_088389688.1;Name=WP_088389688.1;Ontology_term=GO:0004519,GO:0004527,GO:0005524,GO:0016887,GO:0046872;gbkey=CDS;go_function=endonuclease activity|0004519||IEA,exonuclease activity|0004527||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004847774.1;locus_tag=C9E96_RS09070;product=ATP-dependent nuclease;protein_id=WP_088389688.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	26163	27203	.	+	.	ID=gene-C9E96_RS09075;Name=C9E96_RS09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09075;old_locus_tag=C9E96_09260
NZ_PYJX01000106.1	Protein Homology	CDS	26163	27203	.	+	0	ID=cds-WP_080187836.1;Parent=gene-C9E96_RS09075;Dbxref=GenBank:WP_080187836.1;Name=WP_080187836.1;Ontology_term=GO:0006304,GO:0003677,GO:0003886,GO:0008168,GO:1904047;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA (cytosine-5-)-methyltransferase activity|0003886||IEA,methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000599523.1;locus_tag=C9E96_RS09075;product=DNA cytosine methyltransferase;protein_id=WP_080187836.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	27212	27565	.	-	.	ID=gene-C9E96_RS09080;Name=C9E96_RS09080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09080;old_locus_tag=C9E96_09265
NZ_PYJX01000106.1	Protein Homology	CDS	27212	27565	.	-	0	ID=cds-WP_065618882.1;Parent=gene-C9E96_RS09080;Dbxref=GenBank:WP_065618882.1;Name=WP_065618882.1;Ontology_term=GO:0060567,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=negative regulation of termination of DNA-templated transcription|0060567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001205462.1;locus_tag=C9E96_RS09080;product=antiterminator Q family protein;protein_id=WP_065618882.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	pseudogene	27558	27918	.	-	.	ID=gene-C9E96_RS24200;Name=C9E96_RS24200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24200;old_locus_tag=C9E96_09270;pseudo=true
NZ_PYJX01000106.1	Protein Homology	CDS	27558	27918	.	-	0	ID=cds-C9E96_RS24200;Parent=gene-C9E96_RS24200;Note=frameshifted%3B internal stop;Ontology_term=GO:0006281,GO:0006310,GO:0000287,GO:0000400,GO:0008821;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,four-way junction DNA binding|0000400||IEA,crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001752686.1;locus_tag=C9E96_RS24200;product=RusA family crossover junction endodeoxyribonuclease;pseudo=true;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	27915	28196	.	-	.	ID=gene-C9E96_RS09090;Name=C9E96_RS09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09090;old_locus_tag=C9E96_09275
NZ_PYJX01000106.1	Protein Homology	CDS	27915	28196	.	-	0	ID=cds-WP_050942040.1;Parent=gene-C9E96_RS09090;Dbxref=GenBank:WP_050942040.1;Name=WP_050942040.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000861018.1;locus_tag=C9E96_RS09090;product=DUF1364 family protein;protein_id=WP_050942040.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	28193	28387	.	-	.	ID=gene-C9E96_RS24205;Name=C9E96_RS24205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24205;old_locus_tag=C9E96_09280
NZ_PYJX01000106.1	Protein Homology	CDS	28193	28387	.	-	0	ID=cds-WP_024136025.1;Parent=gene-C9E96_RS24205;Dbxref=GenBank:WP_024136025.1;Name=WP_024136025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000784711.1;locus_tag=C9E96_RS24205;product=hypothetical protein;protein_id=WP_024136025.1;transl_table=11
NZ_PYJX01000106.1	RefSeq	gene	28384	28704	.	-	.	ID=gene-C9E96_RS09100;Name=C9E96_RS09100;end_range=28704,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09100;old_locus_tag=C9E96_09285;partial=true
NZ_PYJX01000106.1	Protein Homology	CDS	28384	28704	.	-	0	ID=cds-WP_135494110.1;Parent=gene-C9E96_RS09100;Dbxref=GenBank:WP_135494110.1;Name=WP_135494110.1;end_range=28704,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013097726.1;locus_tag=C9E96_RS09100;partial=true;product=recombination protein NinB;protein_id=WP_135494110.1;transl_table=11
##sequence-region NZ_PYJX01000136.1 1 28165
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000136.1	RefSeq	region	1	28165	.	+	.	ID=NZ_PYJX01000136.1:1..28165;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000136.1	RefSeq	gene	1	550	.	+	.	ID=gene-C9E96_RS11280;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=C9E96_RS11280;old_locus_tag=C9E96_11555;partial=true;start_range=.,1
NZ_PYJX01000136.1	Protein Homology	CDS	1	550	.	+	1	ID=cds-WP_135494209.1;Parent=gene-C9E96_RS11280;Dbxref=GenBank:WP_135494209.1;Name=WP_135494209.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459115.1;locus_tag=C9E96_RS11280;partial=true;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_135494209.1;start_range=.,1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	886	1008	.	-	.	ID=gene-C9E96_RS11285;Name=sgrT;gbkey=Gene;gene=sgrT;gene_biotype=protein_coding;locus_tag=C9E96_RS11285;old_locus_tag=C9E96_11560
NZ_PYJX01000136.1	Protein Homology	CDS	886	1008	.	-	0	ID=cds-WP_001248755.1;Parent=gene-C9E96_RS11285;Dbxref=GenBank:WP_001248755.1;Name=WP_001248755.1;Ontology_term=GO:0046325;gbkey=CDS;gene=sgrT;go_process=negative regulation of D-glucose import|0046325||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001248755.1;locus_tag=C9E96_RS11285;product=glucose uptake inhibitor SgrT;protein_id=WP_001248755.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	1101	2759	.	+	.	ID=gene-C9E96_RS11290;Name=sgrR;gbkey=Gene;gene=sgrR;gene_biotype=protein_coding;locus_tag=C9E96_RS11290;old_locus_tag=C9E96_11565
NZ_PYJX01000136.1	Protein Homology	CDS	1101	2759	.	+	0	ID=cds-WP_080068155.1;Parent=gene-C9E96_RS11290;Dbxref=GenBank:WP_080068155.1;Name=WP_080068155.1;gbkey=CDS;gene=sgrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459114.1;locus_tag=C9E96_RS11290;product=HTH-type transcriptional regulator SgrR;protein_id=WP_080068155.1;transl_table=11
NZ_PYJX01000136.1	cmsearch	riboswitch	2806	2905	.	+	.	ID=id-NZ_PYJX01000136.1:2806..2905;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYJX01000136.1	RefSeq	gene	2937	3920	.	+	.	ID=gene-C9E96_RS11295;Name=thiB;gbkey=Gene;gene=thiB;gene_biotype=protein_coding;locus_tag=C9E96_RS11295;old_locus_tag=C9E96_11570
NZ_PYJX01000136.1	Protein Homology	CDS	2937	3920	.	+	0	ID=cds-WP_076110984.1;Parent=gene-C9E96_RS11295;Dbxref=GenBank:WP_076110984.1;Name=WP_076110984.1;Ontology_term=GO:0015888,GO:0030975,GO:0048502,GO:0030288,GO:0055052;gbkey=CDS;gene=thiB;go_component=outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=thiamine binding|0030975||IEA,ABC-type thiamine transporter activity|0048502||IEA;go_process=thiamine transport|0015888||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459113.1;locus_tag=C9E96_RS11295;product=thiamine ABC transporter substrate binding subunit;protein_id=WP_076110984.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	3896	5506	.	+	.	ID=gene-C9E96_RS11300;Name=thiP;gbkey=Gene;gene=thiP;gene_biotype=protein_coding;locus_tag=C9E96_RS11300;old_locus_tag=C9E96_11575
NZ_PYJX01000136.1	Protein Homology	CDS	3896	5506	.	+	0	ID=cds-WP_135494211.1;Parent=gene-C9E96_RS11300;Dbxref=GenBank:WP_135494211.1;Name=WP_135494211.1;gbkey=CDS;gene=thiP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459112.1;locus_tag=C9E96_RS11300;product=thiamine/thiamine pyrophosphate ABC transporter permease ThiP;protein_id=WP_135494211.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	5490	6197	.	+	.	ID=gene-C9E96_RS11305;Name=thiQ;gbkey=Gene;gene=thiQ;gene_biotype=protein_coding;locus_tag=C9E96_RS11305;old_locus_tag=C9E96_11580
NZ_PYJX01000136.1	Protein Homology	CDS	5490	6197	.	+	0	ID=cds-WP_000915976.1;Parent=gene-C9E96_RS11305;Dbxref=GenBank:WP_000915976.1;Name=WP_000915976.1;gbkey=CDS;gene=thiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459111.1;locus_tag=C9E96_RS11305;product=thiamine ABC transporter ATP-binding protein ThiQ;protein_id=WP_000915976.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	6236	7003	.	-	.	ID=gene-C9E96_RS11310;Name=C9E96_RS11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11310;old_locus_tag=C9E96_11585
NZ_PYJX01000136.1	Protein Homology	CDS	6236	7003	.	-	0	ID=cds-WP_001615453.1;Parent=gene-C9E96_RS11310;Dbxref=GenBank:WP_001615453.1;Name=WP_001615453.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459110.1;locus_tag=C9E96_RS11310;product=DedA family protein;protein_id=WP_001615453.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	7122	7967	.	-	.	ID=gene-C9E96_RS11315;Name=araC;gbkey=Gene;gene=araC;gene_biotype=protein_coding;locus_tag=C9E96_RS11315;old_locus_tag=C9E96_11590
NZ_PYJX01000136.1	Protein Homology	CDS	7122	7967	.	-	0	ID=cds-WP_000852387.1;Parent=gene-C9E96_RS11315;Dbxref=GenBank:WP_000852387.1;Name=WP_000852387.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=araC;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459109.1;locus_tag=C9E96_RS11315;product=arabinose operon transcriptional regulator AraC;protein_id=WP_000852387.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	8308	10017	.	+	.	ID=gene-C9E96_RS11320;Name=araB;gbkey=Gene;gene=araB;gene_biotype=protein_coding;locus_tag=C9E96_RS11320;old_locus_tag=C9E96_11595
NZ_PYJX01000136.1	Protein Homology	CDS	8308	10017	.	+	0	ID=cds-WP_135494213.1;Parent=gene-C9E96_RS11320;Dbxref=GenBank:WP_135494213.1;Name=WP_135494213.1;Ontology_term=GO:0019568,GO:0005524,GO:0008741;gbkey=CDS;gene=araB;go_function=ATP binding|0005524||IEA,ribulokinase activity|0008741||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459108.1;locus_tag=C9E96_RS11320;product=ribulokinase;protein_id=WP_135494213.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	10028	11530	.	+	.	ID=gene-C9E96_RS11325;Name=araA;gbkey=Gene;gene=araA;gene_biotype=protein_coding;locus_tag=C9E96_RS11325;old_locus_tag=C9E96_11600
NZ_PYJX01000136.1	Protein Homology	CDS	10028	11530	.	+	0	ID=cds-WP_135494215.1;Parent=gene-C9E96_RS11325;Dbxref=GenBank:WP_135494215.1;Name=WP_135494215.1;Ontology_term=GO:0005996,GO:0008733;gbkey=CDS;gene=araA;go_function=L-arabinose isomerase activity|0008733||IEA;go_process=monosaccharide metabolic process|0005996||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459107.1;locus_tag=C9E96_RS11325;product=L-arabinose isomerase;protein_id=WP_135494215.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	11671	12366	.	+	.	ID=gene-C9E96_RS11330;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=C9E96_RS11330;old_locus_tag=C9E96_11605
NZ_PYJX01000136.1	Protein Homology	CDS	11671	12366	.	+	0	ID=cds-WP_058108067.1;Parent=gene-C9E96_RS11330;Dbxref=GenBank:WP_058108067.1;Name=WP_058108067.1;Ontology_term=GO:0019568,GO:0008270,GO:0008742;gbkey=CDS;gene=araD;go_function=zinc ion binding|0008270||IEA,L-ribulose-phosphate 4-epimerase activity|0008742||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459106.1;locus_tag=C9E96_RS11330;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_058108067.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	12372	12791	.	-	.	ID=gene-C9E96_RS11335;Name=C9E96_RS11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11335;old_locus_tag=C9E96_11610
NZ_PYJX01000136.1	Protein Homology	CDS	12372	12791	.	-	0	ID=cds-WP_023218414.1;Parent=gene-C9E96_RS11335;Dbxref=GenBank:WP_023218414.1;Name=WP_023218414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459105.1;locus_tag=C9E96_RS11335;product=DUF4751 family protein;protein_id=WP_023218414.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	13309	13929	.	+	.	ID=gene-C9E96_RS11345;Name=C9E96_RS11345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11345;old_locus_tag=C9E96_11620
NZ_PYJX01000136.1	Protein Homology	CDS	13309	13929	.	+	0	ID=cds-WP_080203761.1;Parent=gene-C9E96_RS11345;Dbxref=GenBank:WP_080203761.1;Name=WP_080203761.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459103.1;locus_tag=C9E96_RS11345;product=YdcF family protein;protein_id=WP_080203761.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	13973	16324	.	+	.	ID=gene-C9E96_RS11350;Name=polB;gbkey=Gene;gene=polB;gene_biotype=protein_coding;locus_tag=C9E96_RS11350;old_locus_tag=C9E96_11625
NZ_PYJX01000136.1	Protein Homology	CDS	13973	16324	.	+	0	ID=cds-WP_000035716.1;Parent=gene-C9E96_RS11350;Dbxref=GenBank:WP_000035716.1;Name=WP_000035716.1;Ontology_term=GO:0003677,GO:0003887;gbkey=CDS;gene=polB;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459102.1;locus_tag=C9E96_RS11350;product=DNA polymerase II;protein_id=WP_000035716.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	16498	19404	.	+	.	ID=gene-C9E96_RS11355;Name=rapA;gbkey=Gene;gene=rapA;gene_biotype=protein_coding;locus_tag=C9E96_RS11355;old_locus_tag=C9E96_11635
NZ_PYJX01000136.1	Protein Homology	CDS	16498	19404	.	+	0	ID=cds-WP_135494217.1;Parent=gene-C9E96_RS11355;Dbxref=GenBank:WP_135494217.1;Name=WP_135494217.1;Ontology_term=GO:0006355,GO:0005524,GO:0016817,GO:0140658;gbkey=CDS;gene=rapA;go_function=ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides|0016817||IEA,ATP-dependent chromatin remodeler activity|0140658||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001117023.1;locus_tag=C9E96_RS11355;product=RNA polymerase-associated protein RapA;protein_id=WP_135494217.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	19416	20075	.	+	.	ID=gene-C9E96_RS11360;Name=rluA;gbkey=Gene;gene=rluA;gene_biotype=protein_coding;locus_tag=C9E96_RS11360;old_locus_tag=C9E96_11640
NZ_PYJX01000136.1	Protein Homology	CDS	19416	20075	.	+	0	ID=cds-WP_000525198.1;Parent=gene-C9E96_RS11360;Dbxref=GenBank:WP_000525198.1;Name=WP_000525198.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459100.1;locus_tag=C9E96_RS11360;product=bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA;protein_id=WP_000525198.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	20170	20982	.	-	.	ID=gene-C9E96_RS11365;Name=djlA;gbkey=Gene;gene=djlA;gene_biotype=protein_coding;locus_tag=C9E96_RS11365;old_locus_tag=C9E96_11645
NZ_PYJX01000136.1	Protein Homology	CDS	20170	20982	.	-	0	ID=cds-WP_001200595.1;Parent=gene-C9E96_RS11365;Dbxref=GenBank:WP_001200595.1;Name=WP_001200595.1;Ontology_term=GO:0051087;gbkey=CDS;gene=djlA;go_function=protein-folding chaperone binding|0051087||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459099.1;locus_tag=C9E96_RS11365;product=co-chaperone DjlA;protein_id=WP_001200595.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	21236	23596	.	+	.	ID=gene-C9E96_RS11370;Name=lptD;gbkey=Gene;gene=lptD;gene_biotype=protein_coding;locus_tag=C9E96_RS11370;old_locus_tag=C9E96_11650
NZ_PYJX01000136.1	Protein Homology	CDS	21236	23596	.	+	0	ID=cds-WP_000746116.1;Parent=gene-C9E96_RS11370;Dbxref=GenBank:WP_000746116.1;Name=WP_000746116.1;Ontology_term=GO:0015920,GO:0043165,GO:0019867;gbkey=CDS;gene=lptD;go_component=outer membrane|0019867||IEA;go_process=lipopolysaccharide transport|0015920||IEA,Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459098.1;locus_tag=C9E96_RS11370;product=LPS assembly protein LptD;protein_id=WP_000746116.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	23650	24936	.	+	.	ID=gene-C9E96_RS11375;Name=surA;gbkey=Gene;gene=surA;gene_biotype=protein_coding;locus_tag=C9E96_RS11375;old_locus_tag=C9E96_11655
NZ_PYJX01000136.1	Protein Homology	CDS	23650	24936	.	+	0	ID=cds-WP_000800482.1;Parent=gene-C9E96_RS11375;Dbxref=GenBank:WP_000800482.1;Name=WP_000800482.1;Ontology_term=GO:0006457,GO:0043165,GO:0050821,GO:0060274,GO:0003755,GO:0042277,GO:0051082,GO:0030288;gbkey=CDS;gene=surA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,peptide binding|0042277||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA,Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA,protein stabilization|0050821||IEA,maintenance of stationary phase|0060274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459097.1;locus_tag=C9E96_RS11375;product=peptidylprolyl isomerase SurA;protein_id=WP_000800482.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	24936	25925	.	+	.	ID=gene-C9E96_RS11380;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=C9E96_RS11380;old_locus_tag=C9E96_11660
NZ_PYJX01000136.1	Protein Homology	CDS	24936	25925	.	+	0	ID=cds-WP_135369795.1;Parent=gene-C9E96_RS11380;Dbxref=GenBank:WP_135369795.1;Name=WP_135369795.1;Ontology_term=GO:0008615,GO:0050570;gbkey=CDS;gene=pdxA;go_function=4-hydroxythreonine-4-phosphate dehydrogenase activity|0050570||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459096.1;locus_tag=C9E96_RS11380;product=4-hydroxythreonine-4-phosphate dehydrogenase PdxA;protein_id=WP_135369795.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	25922	26743	.	+	.	ID=gene-C9E96_RS11385;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=C9E96_RS11385;old_locus_tag=C9E96_11665
NZ_PYJX01000136.1	Protein Homology	CDS	25922	26743	.	+	0	ID=cds-WP_001065397.1;Parent=gene-C9E96_RS11385;Dbxref=GenBank:WP_001065397.1;Name=WP_001065397.1;Ontology_term=GO:0006364,GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459095.1;locus_tag=C9E96_RS11385;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=WP_001065397.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	26746	27123	.	+	.	ID=gene-C9E96_RS11390;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=C9E96_RS11390;old_locus_tag=C9E96_11670
NZ_PYJX01000136.1	Protein Homology	CDS	26746	27123	.	+	0	ID=cds-WP_000610894.1;Parent=gene-C9E96_RS11390;Dbxref=GenBank:WP_000610894.1;Name=WP_000610894.1;gbkey=CDS;gene=apaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459094.1;locus_tag=C9E96_RS11390;product=Co2+/Mg2+ efflux protein ApaG;protein_id=WP_000610894.1;transl_table=11
NZ_PYJX01000136.1	RefSeq	gene	27134	27982	.	+	.	ID=gene-C9E96_RS11395;Name=apaH;gbkey=Gene;gene=apaH;gene_biotype=protein_coding;locus_tag=C9E96_RS11395;old_locus_tag=C9E96_11675
NZ_PYJX01000136.1	Protein Homology	CDS	27134	27982	.	+	0	ID=cds-WP_000257211.1;Parent=gene-C9E96_RS11395;Dbxref=GenBank:WP_000257211.1;Name=WP_000257211.1;Ontology_term=GO:0008803;gbkey=CDS;gene=apaH;go_function=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity|0008803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459093.1;locus_tag=C9E96_RS11395;product=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH;protein_id=WP_000257211.1;transl_table=11
##sequence-region NZ_PYJX01000070.1 1 27919
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000070.1	RefSeq	region	1	27919	.	+	.	ID=NZ_PYJX01000070.1:1..27919;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000070.1	RefSeq	gene	1	1176	.	+	.	ID=gene-C9E96_RS05790;Name=C9E96_RS05790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05790;old_locus_tag=C9E96_05930;partial=true;start_range=.,1
NZ_PYJX01000070.1	Protein Homology	CDS	1	1176	.	+	0	ID=cds-WP_135493944.1;Parent=gene-C9E96_RS05790;Dbxref=GenBank:WP_135493944.1;Name=WP_135493944.1;Ontology_term=GO:0071973,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460912.1;locus_tag=C9E96_RS05790;partial=true;product=flagellin;protein_id=WP_135493944.1;start_range=.,1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	1255	2460	.	+	.	ID=gene-C9E96_RS05795;Name=fliB;gbkey=Gene;gene=fliB;gene_biotype=protein_coding;locus_tag=C9E96_RS05795;old_locus_tag=C9E96_05935
NZ_PYJX01000070.1	Protein Homology	CDS	1255	2460	.	+	0	ID=cds-WP_000659233.1;Parent=gene-C9E96_RS05795;Dbxref=GenBank:WP_000659233.1;Name=WP_000659233.1;gbkey=CDS;gene=fliB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460911.1;locus_tag=C9E96_RS05795;product=flagellin lysine-N-methylase;protein_id=WP_000659233.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	2657	3376	.	+	.	ID=gene-C9E96_RS05800;Name=C9E96_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05800;old_locus_tag=C9E96_05940
NZ_PYJX01000070.1	Protein Homology	CDS	2657	3376	.	+	0	ID=cds-WP_001087453.1;Parent=gene-C9E96_RS05800;Dbxref=GenBank:WP_001087453.1;Name=WP_001087453.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003899,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460909.1;locus_tag=C9E96_RS05800;product=RNA polymerase sigma factor FliA;protein_id=WP_001087453.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	3435	3986	.	+	.	ID=gene-C9E96_RS05805;Name=fliZ;gbkey=Gene;gene=fliZ;gene_biotype=protein_coding;locus_tag=C9E96_RS05805;old_locus_tag=C9E96_05945
NZ_PYJX01000070.1	Protein Homology	CDS	3435	3986	.	+	0	ID=cds-WP_000218080.1;Parent=gene-C9E96_RS05805;Dbxref=GenBank:WP_000218080.1;Name=WP_000218080.1;gbkey=CDS;gene=fliZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460908.1;locus_tag=C9E96_RS05805;product=flagella biosynthesis regulatory protein FliZ;protein_id=WP_000218080.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	4133	4933	.	+	.	ID=gene-C9E96_RS05810;Name=tcyJ;gbkey=Gene;gene=tcyJ;gene_biotype=protein_coding;locus_tag=C9E96_RS05810;old_locus_tag=C9E96_05950
NZ_PYJX01000070.1	Protein Homology	CDS	4133	4933	.	+	0	ID=cds-WP_000761634.1;Parent=gene-C9E96_RS05810;Dbxref=GenBank:WP_000761634.1;Name=WP_000761634.1;Ontology_term=GO:0015276,GO:0016020;gbkey=CDS;gene=tcyJ;go_component=membrane|0016020||IEA;go_function=ligand-gated monoatomic ion channel activity|0015276||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460907.1;locus_tag=C9E96_RS05810;product=cystine ABC transporter substrate-binding protein;protein_id=WP_000761634.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	5087	6073	.	+	.	ID=gene-C9E96_RS05815;Name=dcyD;gbkey=Gene;gene=dcyD;gene_biotype=protein_coding;locus_tag=C9E96_RS05815;old_locus_tag=C9E96_05955
NZ_PYJX01000070.1	Protein Homology	CDS	5087	6073	.	+	0	ID=cds-WP_001128188.1;Parent=gene-C9E96_RS05815;Dbxref=GenBank:WP_001128188.1;Name=WP_001128188.1;Ontology_term=GO:0019148;gbkey=CDS;gene=dcyD;go_function=D-cysteine desulfhydrase activity|0019148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460906.1;locus_tag=C9E96_RS05815;product=D-cysteine desulfhydrase;protein_id=WP_001128188.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	6094	6762	.	+	.	ID=gene-C9E96_RS05820;Name=tcyL;gbkey=Gene;gene=tcyL;gene_biotype=protein_coding;locus_tag=C9E96_RS05820;old_locus_tag=C9E96_05960
NZ_PYJX01000070.1	Protein Homology	CDS	6094	6762	.	+	0	ID=cds-WP_001158238.1;Parent=gene-C9E96_RS05820;Dbxref=GenBank:WP_001158238.1;Name=WP_001158238.1;gbkey=CDS;gene=tcyL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460905.1;locus_tag=C9E96_RS05820;product=cystine ABC transporter permease;protein_id=WP_001158238.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	6759	7511	.	+	.	ID=gene-C9E96_RS05825;Name=tcyN;gbkey=Gene;gene=tcyN;gene_biotype=protein_coding;locus_tag=C9E96_RS05825;old_locus_tag=C9E96_05965
NZ_PYJX01000070.1	Protein Homology	CDS	6759	7511	.	+	0	ID=cds-WP_135493946.1;Parent=gene-C9E96_RS05825;Dbxref=GenBank:WP_135493946.1;Name=WP_135493946.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424;gbkey=CDS;gene=tcyN;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460904.1;locus_tag=C9E96_RS05825;product=L-cystine ABC transporter ATP-binding protein TcyN;protein_id=WP_135493946.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	7744	8466	.	+	.	ID=gene-C9E96_RS05830;Name=sdiA;gbkey=Gene;gene=sdiA;gene_biotype=protein_coding;locus_tag=C9E96_RS05830;old_locus_tag=C9E96_05970
NZ_PYJX01000070.1	Protein Homology	CDS	7744	8466	.	+	0	ID=cds-WP_135493948.1;Parent=gene-C9E96_RS05830;Dbxref=GenBank:WP_135493948.1;Name=WP_135493948.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=sdiA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460903.1;locus_tag=C9E96_RS05830;product=transcriptional regulator SdiA;protein_id=WP_135493948.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	8533	8757	.	-	.	ID=gene-C9E96_RS05835;Name=C9E96_RS05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05835;old_locus_tag=C9E96_05975
NZ_PYJX01000070.1	Protein Homology	CDS	8533	8757	.	-	0	ID=cds-WP_000106483.1;Parent=gene-C9E96_RS05835;Dbxref=GenBank:WP_000106483.1;Name=WP_000106483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460902.1;locus_tag=C9E96_RS05835;product=DUF2594 family protein;protein_id=WP_000106483.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	8754	8909	.	-	.	ID=gene-C9E96_RS05840;Name=C9E96_RS05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05840;old_locus_tag=C9E96_05980
NZ_PYJX01000070.1	Protein Homology	CDS	8754	8909	.	-	0	ID=cds-WP_000546186.1;Parent=gene-C9E96_RS05840;Dbxref=GenBank:WP_000546186.1;Name=WP_000546186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448360.1;locus_tag=C9E96_RS05840;product=hypothetical protein;protein_id=WP_000546186.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	9221	9877	.	+	.	ID=gene-C9E96_RS05845;Name=uvrY;gbkey=Gene;gene=uvrY;gene_biotype=protein_coding;locus_tag=C9E96_RS05845;old_locus_tag=C9E96_05985
NZ_PYJX01000070.1	Protein Homology	CDS	9221	9877	.	+	0	ID=cds-WP_000611323.1;Parent=gene-C9E96_RS05845;Dbxref=GenBank:WP_000611323.1;Name=WP_000611323.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=uvrY;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460900.1;locus_tag=C9E96_RS05845;product=UvrY/SirA/GacA family response regulator transcription factor;protein_id=WP_000611323.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	9874	11706	.	+	.	ID=gene-C9E96_RS05850;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=C9E96_RS05850;old_locus_tag=C9E96_05990
NZ_PYJX01000070.1	Protein Homology	CDS	9874	11706	.	+	0	ID=cds-WP_080204008.1;Parent=gene-C9E96_RS05850;Dbxref=GenBank:WP_080204008.1;Name=WP_080204008.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460899.1;locus_tag=C9E96_RS05850;product=excinuclease ABC subunit UvrC;protein_id=WP_080204008.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	11763	12311	.	+	.	ID=gene-C9E96_RS05855;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=C9E96_RS05855;old_locus_tag=C9E96_05995
NZ_PYJX01000070.1	Protein Homology	CDS	11763	12311	.	+	0	ID=cds-WP_001160192.1;Parent=gene-C9E96_RS05855;Dbxref=GenBank:WP_001160192.1;Name=WP_001160192.1;gbkey=CDS;gene=pgsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460898.1;locus_tag=C9E96_RS05855;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_001160192.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	12463	12538	.	+	.	ID=gene-C9E96_RS05860;Name=C9E96_RS05860;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS05860;old_locus_tag=C9E96_06000
NZ_PYJX01000070.1	tRNAscan-SE	tRNA	12463	12538	.	+	.	ID=rna-C9E96_RS05860;Parent=gene-C9E96_RS05860;anticodon=(pos:12496..12498);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05860;product=tRNA-Gly
NZ_PYJX01000070.1	tRNAscan-SE	exon	12463	12538	.	+	.	ID=exon-C9E96_RS05860-1;Parent=rna-C9E96_RS05860;anticodon=(pos:12496..12498);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05860;product=tRNA-Gly
NZ_PYJX01000070.1	RefSeq	gene	12591	12664	.	+	.	ID=gene-C9E96_RS05865;Name=C9E96_RS05865;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS05865;old_locus_tag=C9E96_06005
NZ_PYJX01000070.1	tRNAscan-SE	tRNA	12591	12664	.	+	.	ID=rna-C9E96_RS05865;Parent=gene-C9E96_RS05865;anticodon=(pos:12623..12625);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05865;product=tRNA-Cys
NZ_PYJX01000070.1	tRNAscan-SE	exon	12591	12664	.	+	.	ID=exon-C9E96_RS05865-1;Parent=rna-C9E96_RS05865;anticodon=(pos:12623..12625);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05865;product=tRNA-Cys
NZ_PYJX01000070.1	RefSeq	gene	12676	12762	.	+	.	ID=gene-C9E96_RS05870;Name=C9E96_RS05870;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS05870;old_locus_tag=C9E96_06010
NZ_PYJX01000070.1	tRNAscan-SE	tRNA	12676	12762	.	+	.	ID=rna-C9E96_RS05870;Parent=gene-C9E96_RS05870;anticodon=(pos:12710..12712);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05870;product=tRNA-Leu
NZ_PYJX01000070.1	tRNAscan-SE	exon	12676	12762	.	+	.	ID=exon-C9E96_RS05870-1;Parent=rna-C9E96_RS05870;anticodon=(pos:12710..12712);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS05870;product=tRNA-Leu
NZ_PYJX01000070.1	RefSeq	gene	13012	13344	.	+	.	ID=gene-C9E96_RS05875;Name=C9E96_RS05875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05875;old_locus_tag=C9E96_06015
NZ_PYJX01000070.1	Protein Homology	CDS	13012	13344	.	+	0	ID=cds-WP_001521174.1;Parent=gene-C9E96_RS05875;Dbxref=GenBank:WP_001521174.1;Name=WP_001521174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460897.1;locus_tag=C9E96_RS05875;product=hypothetical protein;protein_id=WP_001521174.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	13558	14997	.	+	.	ID=gene-C9E96_RS05880;Name=C9E96_RS05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05880;old_locus_tag=C9E96_06020
NZ_PYJX01000070.1	Protein Homology	CDS	13558	14997	.	+	0	ID=cds-WP_077677857.1;Parent=gene-C9E96_RS05880;Dbxref=GenBank:WP_077677857.1;Name=WP_077677857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460896.1;locus_tag=C9E96_RS05880;product=SH3 domain-containing C40 family peptidase;protein_id=WP_077677857.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	15210	15536	.	+	.	ID=gene-C9E96_RS05885;Name=C9E96_RS05885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05885;old_locus_tag=C9E96_06025
NZ_PYJX01000070.1	Protein Homology	CDS	15210	15536	.	+	0	ID=cds-WP_000240832.1;Parent=gene-C9E96_RS05885;Dbxref=GenBank:WP_000240832.1;Name=WP_000240832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460895.1;locus_tag=C9E96_RS05885;product=glucose-6-phosphate dehydrogenase;protein_id=WP_000240832.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	15775	16440	.	+	.	ID=gene-C9E96_RS05890;Name=C9E96_RS05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05890;old_locus_tag=C9E96_06030
NZ_PYJX01000070.1	Protein Homology	CDS	15775	16440	.	+	0	ID=cds-WP_000781526.1;Parent=gene-C9E96_RS05890;Dbxref=GenBank:WP_000781526.1;Name=WP_000781526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460894.1;locus_tag=C9E96_RS05890;product=YecA family protein;protein_id=WP_000781526.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	16515	17726	.	-	.	ID=gene-C9E96_RS05895;Name=tyrP;gbkey=Gene;gene=tyrP;gene_biotype=protein_coding;locus_tag=C9E96_RS05895;old_locus_tag=C9E96_06035
NZ_PYJX01000070.1	Protein Homology	CDS	16515	17726	.	-	0	ID=cds-WP_001562965.1;Parent=gene-C9E96_RS05895;Dbxref=GenBank:WP_001562965.1;Name=WP_001562965.1;Ontology_term=GO:0015801,GO:0015173,GO:0005886;gbkey=CDS;gene=tyrP;go_component=plasma membrane|0005886||IEA;go_function=aromatic amino acid transmembrane transporter activity|0015173||IEA;go_process=aromatic amino acid transport|0015801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460893.1;locus_tag=C9E96_RS05895;product=tyrosine transporter TyrP;protein_id=WP_001562965.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	17953	18135	.	+	.	ID=gene-C9E96_RS05900;Name=C9E96_RS05900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05900;old_locus_tag=C9E96_06040
NZ_PYJX01000070.1	Protein Homology	CDS	17953	18135	.	+	0	ID=cds-WP_135493950.1;Parent=gene-C9E96_RS05900;Dbxref=GenBank:WP_135493950.1;Name=WP_135493950.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460892.1;locus_tag=C9E96_RS05900;product=YecH family metal-binding protein;protein_id=WP_135493950.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	18238	18735	.	-	.	ID=gene-C9E96_RS05905;Name=ftnA;gbkey=Gene;gene=ftnA;gene_biotype=protein_coding;locus_tag=C9E96_RS05905;old_locus_tag=C9E96_06045
NZ_PYJX01000070.1	Protein Homology	CDS	18238	18735	.	-	0	ID=cds-WP_135493952.1;Parent=gene-C9E96_RS05905;Dbxref=GenBank:WP_135493952.1;Name=WP_135493952.1;Ontology_term=GO:0006879,GO:0008199;gbkey=CDS;gene=ftnA;go_function=ferric iron binding|0008199||IEA;go_process=intracellular iron ion homeostasis|0006879||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000920608.1;locus_tag=C9E96_RS05905;product=non-heme ferritin;protein_id=WP_135493952.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	18975	19310	.	-	.	ID=gene-C9E96_RS05910;Name=C9E96_RS05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05910;old_locus_tag=C9E96_06050
NZ_PYJX01000070.1	Protein Homology	CDS	18975	19310	.	-	0	ID=cds-WP_000803229.1;Parent=gene-C9E96_RS05910;Dbxref=GenBank:WP_000803229.1;Name=WP_000803229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460890.1;locus_tag=C9E96_RS05910;product=YecR-like lipofamily protein;protein_id=WP_000803229.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	19566	20204	.	+	.	ID=gene-C9E96_RS05915;Name=C9E96_RS05915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05915;old_locus_tag=C9E96_06055
NZ_PYJX01000070.1	Protein Homology	CDS	19566	20204	.	+	0	ID=cds-WP_000684804.1;Parent=gene-C9E96_RS05915;Dbxref=GenBank:WP_000684804.1;Name=WP_000684804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460889.1;locus_tag=C9E96_RS05915;product=RpiB/LacA/LacB family sugar-phosphate isomerase;protein_id=WP_000684804.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	20383	20886	.	-	.	ID=gene-C9E96_RS05920;Name=C9E96_RS05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05920;old_locus_tag=C9E96_06060
NZ_PYJX01000070.1	Protein Homology	CDS	20383	20886	.	-	0	ID=cds-WP_000741707.1;Parent=gene-C9E96_RS05920;Dbxref=GenBank:WP_000741707.1;Name=WP_000741707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460888.1;locus_tag=C9E96_RS05920;product=non-heme ferritin-like protein;protein_id=WP_000741707.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	21436	21993	.	+	.	ID=gene-C9E96_RS05925;Name=C9E96_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05925;old_locus_tag=C9E96_06065
NZ_PYJX01000070.1	Protein Homology	CDS	21436	21993	.	+	0	ID=cds-WP_135493954.1;Parent=gene-C9E96_RS05925;Dbxref=GenBank:WP_135493954.1;Name=WP_135493954.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460887.1;locus_tag=C9E96_RS05925;product=DJ-1/PfpI family protein;protein_id=WP_135493954.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	pseudogene	22105	22285	.	+	.	ID=gene-C9E96_RS05930;Name=araH;gbkey=Gene;gene=araH;gene_biotype=pseudogene;locus_tag=C9E96_RS05930;old_locus_tag=C9E96_06070;partial=true;pseudo=true;start_range=.,22105
NZ_PYJX01000070.1	Protein Homology	CDS	22105	22285	.	+	0	ID=cds-C9E96_RS05930;Parent=gene-C9E96_RS05930;Note=Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose%3B frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;gene=araH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707790.1;locus_tag=C9E96_RS05930;partial=true;product=L-arabinose ABC transporter permease AraH;pseudo=true;start_range=.,22105;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	22508	23311	.	+	.	ID=gene-C9E96_RS05935;Name=otsB;gbkey=Gene;gene=otsB;gene_biotype=protein_coding;locus_tag=C9E96_RS05935;old_locus_tag=C9E96_06075
NZ_PYJX01000070.1	Protein Homology	CDS	22508	23311	.	+	0	ID=cds-WP_000840116.1;Parent=gene-C9E96_RS05935;Dbxref=GenBank:WP_000840116.1;Name=WP_000840116.1;Ontology_term=GO:0005992,GO:0004805;gbkey=CDS;gene=otsB;go_function=trehalose-phosphatase activity|0004805||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460886.1;locus_tag=C9E96_RS05935;product=trehalose-phosphatase;protein_id=WP_000840116.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	23286	24707	.	+	.	ID=gene-C9E96_RS05940;Name=otsA;gbkey=Gene;gene=otsA;gene_biotype=protein_coding;locus_tag=C9E96_RS05940;old_locus_tag=C9E96_06080
NZ_PYJX01000070.1	Protein Homology	CDS	23286	24707	.	+	0	ID=cds-WP_135493956.1;Parent=gene-C9E96_RS05940;Dbxref=GenBank:WP_135493956.1;Name=WP_135493956.1;Ontology_term=GO:0005992,GO:0003825;gbkey=CDS;gene=otsA;go_function=alpha%2Calpha-trehalose-phosphate synthase (UDP-forming) activity|0003825||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460885.1;locus_tag=C9E96_RS05940;product=alpha%2Calpha-trehalose-phosphate synthase;protein_id=WP_135493956.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	24725	25153	.	-	.	ID=gene-C9E96_RS05945;Name=uspC;gbkey=Gene;gene=uspC;gene_biotype=protein_coding;locus_tag=C9E96_RS05945;old_locus_tag=C9E96_06085
NZ_PYJX01000070.1	Protein Homology	CDS	24725	25153	.	-	0	ID=cds-WP_080204007.1;Parent=gene-C9E96_RS05945;Dbxref=GenBank:WP_080204007.1;Name=WP_080204007.1;gbkey=CDS;gene=uspC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460884.1;locus_tag=C9E96_RS05945;product=universal stress protein UspC;protein_id=WP_080204007.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	25150	25266	.	-	.	ID=gene-C9E96_RS05950;Name=C9E96_RS05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05950;old_locus_tag=C9E96_06090
NZ_PYJX01000070.1	Protein Homology	CDS	25150	25266	.	-	0	ID=cds-WP_001597434.1;Parent=gene-C9E96_RS05950;Dbxref=GenBank:WP_001597434.1;Name=WP_001597434.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448342.1;locus_tag=C9E96_RS05950;product=hypothetical protein;protein_id=WP_001597434.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	25949	26290	.	+	.	ID=gene-C9E96_RS05955;Name=flhD;gbkey=Gene;gene=flhD;gene_biotype=protein_coding;locus_tag=C9E96_RS05955;old_locus_tag=C9E96_06095
NZ_PYJX01000070.1	Protein Homology	CDS	25949	26290	.	+	0	ID=cds-WP_210114520.1;Parent=gene-C9E96_RS05955;Dbxref=GenBank:WP_210114520.1;Name=WP_210114520.1;Ontology_term=GO:0045893,GO:1902208,GO:0003677;gbkey=CDS;gene=flhD;go_function=DNA binding|0003677||IEA;go_process=positive regulation of DNA-templated transcription|0045893||IEA,regulation of bacterial-type flagellum assembly|1902208||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310629.2;locus_tag=C9E96_RS05955;product=flagellar transcriptional regulator FlhD;protein_id=WP_210114520.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	26287	26871	.	+	.	ID=gene-C9E96_RS05960;Name=flhC;gbkey=Gene;gene=flhC;gene_biotype=protein_coding;locus_tag=C9E96_RS05960;old_locus_tag=C9E96_06100
NZ_PYJX01000070.1	Protein Homology	CDS	26287	26871	.	+	0	ID=cds-WP_000605987.1;Parent=gene-C9E96_RS05960;Dbxref=GenBank:WP_000605987.1;Name=WP_000605987.1;Ontology_term=GO:0045893,GO:1902208,GO:0003677;gbkey=CDS;gene=flhC;go_function=DNA binding|0003677||IEA;go_process=positive regulation of DNA-templated transcription|0045893||IEA,regulation of bacterial-type flagellum assembly|1902208||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460881.3;locus_tag=C9E96_RS05960;product=flagellar transcriptional regulator FlhC;protein_id=WP_000605987.1;transl_table=11
NZ_PYJX01000070.1	RefSeq	gene	26997	27884	.	+	.	ID=gene-C9E96_RS05965;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=C9E96_RS05965;old_locus_tag=C9E96_06105
NZ_PYJX01000070.1	Protein Homology	CDS	26997	27884	.	+	0	ID=cds-WP_000906312.1;Parent=gene-C9E96_RS05965;Dbxref=GenBank:WP_000906312.1;Name=WP_000906312.1;gbkey=CDS;gene=motA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460880.1;locus_tag=C9E96_RS05965;product=flagellar motor stator protein MotA;protein_id=WP_000906312.1;transl_table=11
##sequence-region NZ_PYJX01000201.1 1 27775
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000201.1	RefSeq	region	1	27775	.	+	.	ID=NZ_PYJX01000201.1:1..27775;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000201.1	RefSeq	pseudogene	14	3340	.	+	.	ID=gene-C9E96_RS20045;Name=mscM;gbkey=Gene;gene=mscM;gene_biotype=pseudogene;locus_tag=C9E96_RS20045;old_locus_tag=C9E96_20560;pseudo=true
NZ_PYJX01000201.1	Protein Homology	CDS	14	3340	.	+	0	ID=cds-C9E96_RS20045;Parent=gene-C9E96_RS20045;Note=internal stop;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscM;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463211.1;locus_tag=C9E96_RS20045;product=miniconductance mechanosensitive channel MscM;pseudo=true;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	3407	3721	.	-	.	ID=gene-C9E96_RS20050;Name=C9E96_RS20050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20050;old_locus_tag=C9E96_20565
NZ_PYJX01000201.1	Protein Homology	CDS	3407	3721	.	-	0	ID=cds-WP_000074657.1;Parent=gene-C9E96_RS20050;Dbxref=GenBank:WP_000074657.1;Name=WP_000074657.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463210.1;locus_tag=C9E96_RS20050;product=YjeO family protein;protein_id=WP_000074657.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	3773	5275	.	-	.	ID=gene-C9E96_RS20055;Name=yjeM;gbkey=Gene;gene=yjeM;gene_biotype=protein_coding;locus_tag=C9E96_RS20055;old_locus_tag=C9E96_20570
NZ_PYJX01000201.1	Protein Homology	CDS	3773	5275	.	-	0	ID=cds-WP_000149876.1;Parent=gene-C9E96_RS20055;Dbxref=GenBank:WP_000149876.1;Name=WP_000149876.1;Ontology_term=GO:0022857;gbkey=CDS;gene=yjeM;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463209.1;locus_tag=C9E96_RS20055;product=glutamate/gamma-aminobutyrate family transporter YjeM;protein_id=WP_000149876.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	5501	6478	.	-	.	ID=gene-C9E96_RS20060;Name=epmA;gbkey=Gene;gene=epmA;gene_biotype=protein_coding;locus_tag=C9E96_RS20060;old_locus_tag=C9E96_20575
NZ_PYJX01000201.1	Protein Homology	CDS	5501	6478	.	-	0	ID=cds-WP_000004794.1;Parent=gene-C9E96_RS20060;Dbxref=GenBank:WP_000004794.1;Name=WP_000004794.1;Ontology_term=GO:0006418,GO:0004812;gbkey=CDS;gene=epmA;go_function=aminoacyl-tRNA ligase activity|0004812||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000004771.1;locus_tag=C9E96_RS20060;product=elongation factor P--(R)-beta-lysine ligase;protein_id=WP_000004794.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	6801	8591	.	+	.	ID=gene-C9E96_RS20065;Name=frdA;gbkey=Gene;gene=frdA;gene_biotype=protein_coding;locus_tag=C9E96_RS20065;old_locus_tag=C9E96_20580
NZ_PYJX01000201.1	Protein Homology	CDS	6801	8591	.	+	0	ID=cds-WP_001192954.1;Parent=gene-C9E96_RS20065;Dbxref=GenBank:WP_001192954.1;Name=WP_001192954.1;Ontology_term=GO:0009061,GO:0022900,GO:0016491,GO:0050660;gbkey=CDS;gene=frdA;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=anaerobic respiration|0009061||IEA,electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463207.1;locus_tag=C9E96_RS20065;product=fumarate reductase (quinol) flavoprotein subunit;protein_id=WP_001192954.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	8584	9318	.	+	.	ID=gene-C9E96_RS20070;Name=frdB;gbkey=Gene;gene=frdB;gene_biotype=protein_coding;locus_tag=C9E96_RS20070;old_locus_tag=C9E96_20585
NZ_PYJX01000201.1	Protein Homology	CDS	8584	9318	.	+	0	ID=cds-WP_000829509.1;Parent=gene-C9E96_RS20070;Dbxref=GenBank:WP_000829509.1;Name=WP_000829509.1;gbkey=CDS;gene=frdB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882957.1;locus_tag=C9E96_RS20070;product=fumarate reductase iron-sulfur protein;protein_id=WP_000829509.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	9329	9724	.	+	.	ID=gene-C9E96_RS20075;Name=frdC;gbkey=Gene;gene=frdC;gene_biotype=protein_coding;locus_tag=C9E96_RS20075;old_locus_tag=C9E96_20590
NZ_PYJX01000201.1	Protein Homology	CDS	9329	9724	.	+	0	ID=cds-WP_000208749.1;Parent=gene-C9E96_RS20075;Dbxref=GenBank:WP_000208749.1;Name=WP_000208749.1;Ontology_term=GO:0016020;gbkey=CDS;gene=frdC;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463205.1;locus_tag=C9E96_RS20075;product=fumarate reductase subunit FrdC;protein_id=WP_000208749.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	9735	10094	.	+	.	ID=gene-C9E96_RS20080;Name=frdD;gbkey=Gene;gene=frdD;gene_biotype=protein_coding;locus_tag=C9E96_RS20080;old_locus_tag=C9E96_20595
NZ_PYJX01000201.1	Protein Homology	CDS	9735	10094	.	+	0	ID=cds-WP_000609650.1;Parent=gene-C9E96_RS20080;Dbxref=GenBank:WP_000609650.1;Name=WP_000609650.1;gbkey=CDS;gene=frdD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463204.1;locus_tag=C9E96_RS20080;product=fumarate reductase subunit FrdD;protein_id=WP_000609650.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	10206	10739	.	+	.	ID=gene-C9E96_RS20085;Name=C9E96_RS20085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20085;old_locus_tag=C9E96_20600
NZ_PYJX01000201.1	Protein Homology	CDS	10206	10739	.	+	0	ID=cds-WP_001221669.1;Parent=gene-C9E96_RS20085;Dbxref=GenBank:WP_001221669.1;Name=WP_001221669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463203.1;locus_tag=C9E96_RS20085;product=lipocalin family protein;protein_id=WP_001221669.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	10756	11073	.	-	.	ID=gene-C9E96_RS20090;Name=sugE;gbkey=Gene;gene=sugE;gene_biotype=protein_coding;locus_tag=C9E96_RS20090;old_locus_tag=C9E96_20605
NZ_PYJX01000201.1	Protein Homology	CDS	10756	11073	.	-	0	ID=cds-WP_000118469.1;Parent=gene-C9E96_RS20090;Dbxref=GenBank:WP_000118469.1;Name=WP_000118469.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;gene=sugE;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463202.1;locus_tag=C9E96_RS20090;product=quaternary ammonium compound efflux SMR transporter SugE;protein_id=WP_000118469.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	11330	11917	.	+	.	ID=gene-C9E96_RS20095;Name=C9E96_RS20095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20095;old_locus_tag=C9E96_20610
NZ_PYJX01000201.1	Protein Homology	CDS	11330	11917	.	+	0	ID=cds-WP_000912959.1;Parent=gene-C9E96_RS20095;Dbxref=GenBank:WP_000912959.1;Name=WP_000912959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463201.1;locus_tag=C9E96_RS20095;product=helix-turn-helix transcriptional regulator;protein_id=WP_000912959.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	11948	12094	.	-	.	ID=gene-C9E96_RS20100;Name=ecnB;gbkey=Gene;gene=ecnB;gene_biotype=protein_coding;locus_tag=C9E96_RS20100;old_locus_tag=C9E96_20615
NZ_PYJX01000201.1	Protein Homology	CDS	11948	12094	.	-	0	ID=cds-WP_000239598.1;Parent=gene-C9E96_RS20100;Dbxref=GenBank:WP_000239598.1;Name=WP_000239598.1;gbkey=CDS;gene=ecnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463200.1;locus_tag=C9E96_RS20100;product=lipoprotein toxin entericidin B;protein_id=WP_000239598.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	12202	12336	.	-	.	ID=gene-C9E96_RS20110;Name=C9E96_RS20110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20110;old_locus_tag=C9E96_20625
NZ_PYJX01000201.1	Protein Homology	CDS	12202	12336	.	-	0	ID=cds-WP_001595192.1;Parent=gene-C9E96_RS20110;Dbxref=GenBank:WP_001595192.1;Name=WP_001595192.1;Ontology_term=GO:0009636,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=response to toxic substance|0009636||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026283.1;locus_tag=C9E96_RS20110;product=entericidin A/B family lipoprotein;protein_id=WP_001595192.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	12397	12963	.	-	.	ID=gene-C9E96_RS20115;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=C9E96_RS20115;old_locus_tag=C9E96_20630
NZ_PYJX01000201.1	Protein Homology	CDS	12397	12963	.	-	0	ID=cds-WP_000257282.1;Parent=gene-C9E96_RS20115;Dbxref=GenBank:WP_000257282.1;Name=WP_000257282.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004871142.1;locus_tag=C9E96_RS20115;product=elongation factor P;protein_id=WP_000257282.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	13004	14032	.	+	.	ID=gene-C9E96_RS20120;Name=epmB;gbkey=Gene;gene=epmB;gene_biotype=protein_coding;locus_tag=C9E96_RS20120;old_locus_tag=C9E96_20635
NZ_PYJX01000201.1	Protein Homology	CDS	13004	14032	.	+	0	ID=cds-WP_000940477.1;Parent=gene-C9E96_RS20120;Dbxref=GenBank:WP_000940477.1;Name=WP_000940477.1;gbkey=CDS;gene=epmB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463197.1;locus_tag=C9E96_RS20120;product=EF-P beta-lysylation protein EpmB;protein_id=WP_000940477.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	14315	15172	.	+	.	ID=gene-C9E96_RS20125;Name=C9E96_RS20125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20125;old_locus_tag=C9E96_20640
NZ_PYJX01000201.1	Protein Homology	CDS	14315	15172	.	+	0	ID=cds-WP_023245328.1;Parent=gene-C9E96_RS20125;Dbxref=GenBank:WP_023245328.1;Name=WP_023245328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463196.1;locus_tag=C9E96_RS20125;product=YjeJ family protein;protein_id=WP_023245328.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	15220	15573	.	-	.	ID=gene-C9E96_RS20130;Name=C9E96_RS20130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20130;old_locus_tag=C9E96_20645
NZ_PYJX01000201.1	Protein Homology	CDS	15220	15573	.	-	0	ID=cds-WP_000558210.1;Parent=gene-C9E96_RS20130;Dbxref=GenBank:WP_000558210.1;Name=WP_000558210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418568.2;locus_tag=C9E96_RS20130;product=DUF4156 domain-containing protein;protein_id=WP_000558210.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	15808	17454	.	-	.	ID=gene-C9E96_RS20135;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=C9E96_RS20135;old_locus_tag=C9E96_20650
NZ_PYJX01000201.1	Protein Homology	CDS	15808	17454	.	-	0	ID=cds-WP_000729126.1;Parent=gene-C9E96_RS20135;Dbxref=GenBank:WP_000729126.1;Name=WP_000729126.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0042026,GO:0140662;gbkey=CDS;gene=groL;go_function=ATP-dependent protein folding chaperone|0140662||IEA;go_process=protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120975.1;locus_tag=C9E96_RS20135;product=chaperonin GroEL;protein_id=WP_000729126.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	17498	17791	.	-	.	ID=gene-C9E96_RS20140;Name=C9E96_RS20140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20140;old_locus_tag=C9E96_20655
NZ_PYJX01000201.1	Protein Homology	CDS	17498	17791	.	-	0	ID=cds-WP_000027827.1;Parent=gene-C9E96_RS20140;Dbxref=GenBank:WP_000027827.1;Name=WP_000027827.1;Ontology_term=GO:0005524,GO:0140662;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000027827.1;locus_tag=C9E96_RS20140;product=co-chaperone GroES;protein_id=WP_000027827.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	18067	19308	.	+	.	ID=gene-C9E96_RS20145;Name=yjeH;gbkey=Gene;gene=yjeH;gene_biotype=protein_coding;locus_tag=C9E96_RS20145;old_locus_tag=C9E96_20660
NZ_PYJX01000201.1	Protein Homology	CDS	18067	19308	.	+	0	ID=cds-WP_001670701.1;Parent=gene-C9E96_RS20145;Dbxref=GenBank:WP_001670701.1;Name=WP_001670701.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yjeH;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463192.1;locus_tag=C9E96_RS20145;product=L-methionine/branched-chain amino acid transporter;protein_id=WP_001670701.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	19367	19843	.	-	.	ID=gene-C9E96_RS20150;Name=C9E96_RS20150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20150;old_locus_tag=C9E96_20665
NZ_PYJX01000201.1	Protein Homology	CDS	19367	19843	.	-	0	ID=cds-WP_001267291.1;Parent=gene-C9E96_RS20150;Dbxref=GenBank:WP_001267291.1;Name=WP_001267291.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313148.1;locus_tag=C9E96_RS20150;product=FxsA family protein;protein_id=WP_001267291.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	20184	21620	.	+	.	ID=gene-C9E96_RS20155;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=C9E96_RS20155;old_locus_tag=C9E96_20670
NZ_PYJX01000201.1	Protein Homology	CDS	20184	21620	.	+	0	ID=cds-WP_135494527.1;Parent=gene-C9E96_RS20155;Dbxref=GenBank:WP_135494527.1;Name=WP_135494527.1;Ontology_term=GO:0006520,GO:0008797;gbkey=CDS;gene=aspA;go_function=aspartate ammonia-lyase activity|0008797||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463190.1;locus_tag=C9E96_RS20155;product=aspartate ammonia-lyase;protein_id=WP_135494527.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	21735	23036	.	+	.	ID=gene-C9E96_RS20160;Name=dcuA;gbkey=Gene;gene=dcuA;gene_biotype=protein_coding;locus_tag=C9E96_RS20160;old_locus_tag=C9E96_20675
NZ_PYJX01000201.1	Protein Homology	CDS	21735	23036	.	+	0	ID=cds-WP_000637595.1;Parent=gene-C9E96_RS20160;Dbxref=GenBank:WP_000637595.1;Name=WP_000637595.1;gbkey=CDS;gene=dcuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463189.1;locus_tag=C9E96_RS20160;product=anaerobic C4-dicarboxylate transporter DcuA;protein_id=WP_000637595.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	23157	23504	.	+	.	ID=gene-C9E96_RS20165;Name=cutA;gbkey=Gene;gene=cutA;gene_biotype=protein_coding;locus_tag=C9E96_RS20165;old_locus_tag=C9E96_20680
NZ_PYJX01000201.1	Protein Homology	CDS	23157	23504	.	+	0	ID=cds-WP_000887832.1;Parent=gene-C9E96_RS20165;Dbxref=GenBank:WP_000887832.1;Name=WP_000887832.1;gbkey=CDS;gene=cutA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463188.1;locus_tag=C9E96_RS20165;product=divalent cation tolerance protein CutA;protein_id=WP_000887832.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	23480	25183	.	+	.	ID=gene-C9E96_RS20170;Name=C9E96_RS20170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20170;old_locus_tag=C9E96_20685
NZ_PYJX01000201.1	Protein Homology	CDS	23480	25183	.	+	0	ID=cds-WP_000068885.1;Parent=gene-C9E96_RS20170;Dbxref=GenBank:WP_000068885.1;Name=WP_000068885.1;Ontology_term=GO:0017004,GO:0009055,GO:0030554,GO:0047134;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,adenyl nucleotide binding|0030554||IEA,protein-disulfide reductase [NAD(P)H] activity|0047134||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463187.1;locus_tag=C9E96_RS20170;product=protein-disulfide reductase DsbD;protein_id=WP_000068885.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	25220	25795	.	+	.	ID=gene-C9E96_RS20175;Name=C9E96_RS20175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20175;old_locus_tag=C9E96_20690
NZ_PYJX01000201.1	Protein Homology	CDS	25220	25795	.	+	0	ID=cds-WP_001188509.1;Parent=gene-C9E96_RS20175;Dbxref=GenBank:WP_001188509.1;Name=WP_001188509.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463186.1;locus_tag=C9E96_RS20175;product=transcriptional regulator;protein_id=WP_001188509.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	25911	25986	.	+	.	ID=gene-C9E96_RS20180;Name=C9E96_RS20180;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS20180;old_locus_tag=C9E96_20695
NZ_PYJX01000201.1	tRNAscan-SE	tRNA	25911	25986	.	+	.	ID=rna-C9E96_RS20180;Parent=gene-C9E96_RS20180;anticodon=(pos:25944..25946);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS20180;product=tRNA-Phe
NZ_PYJX01000201.1	tRNAscan-SE	exon	25911	25986	.	+	.	ID=exon-C9E96_RS20180-1;Parent=rna-C9E96_RS20180;anticodon=(pos:25944..25946);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS20180;product=tRNA-Phe
NZ_PYJX01000201.1	RefSeq	pseudogene	26066	26143	.	-	.	ID=gene-C9E96_RS20185;Name=C9E96_RS20185;end_range=26143,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS20185;old_locus_tag=C9E96_20700;partial=true;pseudo=true
NZ_PYJX01000201.1	Protein Homology	CDS	26066	26143	.	-	0	ID=cds-C9E96_RS20185;Parent=gene-C9E96_RS20185;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=26143,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003842122.1;locus_tag=C9E96_RS20185;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11
NZ_PYJX01000201.1	RefSeq	gene	26697	27449	.	+	.	ID=gene-C9E96_RS20190;Name=C9E96_RS20190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20190;old_locus_tag=C9E96_20705
NZ_PYJX01000201.1	Protein Homology	CDS	26697	27449	.	+	0	ID=cds-WP_023993527.1;Parent=gene-C9E96_RS20190;Dbxref=GenBank:WP_023993527.1;Name=WP_023993527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463184.1;locus_tag=C9E96_RS20190;product=non-specific acid phosphatase;protein_id=WP_023993527.1;transl_table=11
NZ_PYJX01000201.1	RefSeq	pseudogene	27592	27775	.	+	.	ID=gene-C9E96_RS20195;Name=C9E96_RS20195;end_range=27775,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS20195;old_locus_tag=C9E96_20710;partial=true;pseudo=true
NZ_PYJX01000201.1	Protein Homology	CDS	27592	27775	.	+	0	ID=cds-C9E96_RS20195;Parent=gene-C9E96_RS20195;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=27775,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=C9E96_RS20195;partial=true;product=IS256 family transposase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000117.1 1 27300
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000117.1	RefSeq	region	1	27300	.	+	.	ID=NZ_PYJX01000117.1:1..27300;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000117.1	RefSeq	gene	177	1844	.	-	.	ID=gene-C9E96_RS09795;Name=glnS;gbkey=Gene;gene=glnS;gene_biotype=protein_coding;locus_tag=C9E96_RS09795;old_locus_tag=C9E96_10015
NZ_PYJX01000117.1	Protein Homology	CDS	177	1844	.	-	0	ID=cds-WP_023207670.1;Parent=gene-C9E96_RS09795;Dbxref=GenBank:WP_023207670.1;Name=WP_023207670.1;Ontology_term=GO:0006425,GO:0000166,GO:0004819,GO:0005524,GO:0005737;gbkey=CDS;gene=glnS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glutamine-tRNA ligase activity|0004819||IEA,ATP binding|0005524||IEA;go_process=glutaminyl-tRNA aminoacylation|0006425||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459671.1;locus_tag=C9E96_RS09795;product=glutamine--tRNA ligase;protein_id=WP_023207670.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	2055	4007	.	-	.	ID=gene-C9E96_RS09800;Name=nagE;gbkey=Gene;gene=nagE;gene_biotype=protein_coding;locus_tag=C9E96_RS09800;old_locus_tag=C9E96_10020
NZ_PYJX01000117.1	Protein Homology	CDS	2055	4007	.	-	0	ID=cds-WP_080203770.1;Parent=gene-C9E96_RS09800;Dbxref=GenBank:WP_080203770.1;Name=WP_080203770.1;Ontology_term=GO:0009401,GO:0008982,GO:0015572,GO:0016020;gbkey=CDS;gene=nagE;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,N-acetylglucosamine transmembrane transporter activity|0015572||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459670.1;locus_tag=C9E96_RS09800;product=PTS N-acetyl glucosamine transporter subunit IIABC;protein_id=WP_080203770.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	4334	5134	.	+	.	ID=gene-C9E96_RS09805;Name=nagB;gbkey=Gene;gene=nagB;gene_biotype=protein_coding;locus_tag=C9E96_RS09805;old_locus_tag=C9E96_10025
NZ_PYJX01000117.1	Protein Homology	CDS	4334	5134	.	+	0	ID=cds-WP_135494164.1;Parent=gene-C9E96_RS09805;Dbxref=GenBank:WP_135494164.1;Name=WP_135494164.1;Ontology_term=GO:0006044,GO:0004342;gbkey=CDS;gene=nagB;go_function=glucosamine-6-phosphate deaminase activity|0004342||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008805656.1;locus_tag=C9E96_RS09805;product=glucosamine-6-phosphate deaminase;protein_id=WP_135494164.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	5194	6348	.	+	.	ID=gene-C9E96_RS09810;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=C9E96_RS09810;old_locus_tag=C9E96_10030
NZ_PYJX01000117.1	Protein Homology	CDS	5194	6348	.	+	0	ID=cds-WP_000271186.1;Parent=gene-C9E96_RS09810;Dbxref=GenBank:WP_000271186.1;Name=WP_000271186.1;Ontology_term=GO:0006044,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459668.1;locus_tag=C9E96_RS09810;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_000271186.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	6353	7573	.	+	.	ID=gene-C9E96_RS09815;Name=nagC;gbkey=Gene;gene=nagC;gene_biotype=protein_coding;gene_synonym=nagR;locus_tag=C9E96_RS09815;old_locus_tag=C9E96_10035
NZ_PYJX01000117.1	Protein Homology	CDS	6353	7573	.	+	0	ID=cds-WP_000187578.1;Parent=gene-C9E96_RS09815;Dbxref=GenBank:WP_000187578.1;Name=WP_000187578.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=nagC;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459667.1;locus_tag=C9E96_RS09815;product=DNA-binding transcriptional regulator NagC;protein_id=WP_000187578.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	7620	8372	.	+	.	ID=gene-C9E96_RS09820;Name=nagD;gbkey=Gene;gene=nagD;gene_biotype=protein_coding;locus_tag=C9E96_RS09820;old_locus_tag=C9E96_10040
NZ_PYJX01000117.1	Protein Homology	CDS	7620	8372	.	+	0	ID=cds-WP_000153143.1;Parent=gene-C9E96_RS09820;Dbxref=GenBank:WP_000153143.1;Name=WP_000153143.1;gbkey=CDS;gene=nagD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007373873.1;locus_tag=C9E96_RS09820;product=ribonucleotide monophosphatase NagD;protein_id=WP_000153143.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	8662	10326	.	+	.	ID=gene-C9E96_RS09825;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=C9E96_RS09825;old_locus_tag=C9E96_10045
NZ_PYJX01000117.1	Protein Homology	CDS	8662	10326	.	+	0	ID=cds-WP_000337034.1;Parent=gene-C9E96_RS09825;Dbxref=GenBank:WP_000337034.1;Name=WP_000337034.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001724523.1;locus_tag=C9E96_RS09825;product=asparagine synthase B;protein_id=WP_000337034.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	10548	10624	.	+	.	ID=gene-C9E96_RS09830;Name=C9E96_RS09830;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS09830;old_locus_tag=C9E96_10050
NZ_PYJX01000117.1	tRNAscan-SE	tRNA	10548	10624	.	+	.	ID=rna-C9E96_RS09830;Parent=gene-C9E96_RS09830;anticodon=(pos:10582..10584);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09830;product=tRNA-Met
NZ_PYJX01000117.1	tRNAscan-SE	exon	10548	10624	.	+	.	ID=exon-C9E96_RS09830-1;Parent=rna-C9E96_RS09830;anticodon=(pos:10582..10584);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09830;product=tRNA-Met
NZ_PYJX01000117.1	RefSeq	gene	10633	10717	.	+	.	ID=gene-C9E96_RS09835;Name=C9E96_RS09835;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS09835;old_locus_tag=C9E96_10055
NZ_PYJX01000117.1	tRNAscan-SE	tRNA	10633	10717	.	+	.	ID=rna-C9E96_RS09835;Parent=gene-C9E96_RS09835;anticodon=(pos:10667..10669);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09835;product=tRNA-Leu
NZ_PYJX01000117.1	tRNAscan-SE	exon	10633	10717	.	+	.	ID=exon-C9E96_RS09835-1;Parent=rna-C9E96_RS09835;anticodon=(pos:10667..10669);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09835;product=tRNA-Leu
NZ_PYJX01000117.1	RefSeq	gene	10741	10815	.	+	.	ID=gene-C9E96_RS09840;Name=C9E96_RS09840;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS09840;old_locus_tag=C9E96_10060
NZ_PYJX01000117.1	tRNAscan-SE	tRNA	10741	10815	.	+	.	ID=rna-C9E96_RS09840;Parent=gene-C9E96_RS09840;anticodon=(pos:10773..10775);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09840;product=tRNA-Gln
NZ_PYJX01000117.1	tRNAscan-SE	exon	10741	10815	.	+	.	ID=exon-C9E96_RS09840-1;Parent=rna-C9E96_RS09840;anticodon=(pos:10773..10775);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09840;product=tRNA-Gln
NZ_PYJX01000117.1	RefSeq	gene	10851	10925	.	+	.	ID=gene-C9E96_RS09845;Name=C9E96_RS09845;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS09845;old_locus_tag=C9E96_10065
NZ_PYJX01000117.1	tRNAscan-SE	tRNA	10851	10925	.	+	.	ID=rna-C9E96_RS09845;Parent=gene-C9E96_RS09845;anticodon=(pos:10883..10885);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09845;product=tRNA-Gln
NZ_PYJX01000117.1	tRNAscan-SE	exon	10851	10925	.	+	.	ID=exon-C9E96_RS09845-1;Parent=rna-C9E96_RS09845;anticodon=(pos:10883..10885);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09845;product=tRNA-Gln
NZ_PYJX01000117.1	RefSeq	gene	10941	11017	.	+	.	ID=gene-C9E96_RS09850;Name=C9E96_RS09850;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS09850;old_locus_tag=C9E96_10070
NZ_PYJX01000117.1	tRNAscan-SE	tRNA	10941	11017	.	+	.	ID=rna-C9E96_RS09850;Parent=gene-C9E96_RS09850;anticodon=(pos:10975..10977);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09850;product=tRNA-Met
NZ_PYJX01000117.1	tRNAscan-SE	exon	10941	11017	.	+	.	ID=exon-C9E96_RS09850-1;Parent=rna-C9E96_RS09850;anticodon=(pos:10975..10977);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09850;product=tRNA-Met
NZ_PYJX01000117.1	RefSeq	gene	11064	11138	.	+	.	ID=gene-C9E96_RS09855;Name=C9E96_RS09855;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS09855;old_locus_tag=C9E96_10075
NZ_PYJX01000117.1	tRNAscan-SE	tRNA	11064	11138	.	+	.	ID=rna-C9E96_RS09855;Parent=gene-C9E96_RS09855;anticodon=(pos:11096..11098);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09855;product=tRNA-Gln
NZ_PYJX01000117.1	tRNAscan-SE	exon	11064	11138	.	+	.	ID=exon-C9E96_RS09855-1;Parent=rna-C9E96_RS09855;anticodon=(pos:11096..11098);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS09855;product=tRNA-Gln
NZ_PYJX01000117.1	RefSeq	gene	11269	12444	.	-	.	ID=gene-C9E96_RS09860;Name=ubiF;gbkey=Gene;gene=ubiF;gene_biotype=protein_coding;locus_tag=C9E96_RS09860;old_locus_tag=C9E96_10080
NZ_PYJX01000117.1	Protein Homology	CDS	11269	12444	.	-	0	ID=cds-WP_039589520.1;Parent=gene-C9E96_RS09860;Dbxref=GenBank:WP_039589520.1;Name=WP_039589520.1;Ontology_term=GO:0006744,GO:0016709;gbkey=CDS;gene=ubiF;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459663.1;locus_tag=C9E96_RS09860;product=3-demethoxyubiquinol 3-hydroxylase;protein_id=WP_039589520.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	12588	14012	.	+	.	ID=gene-C9E96_RS09865;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=C9E96_RS09865;old_locus_tag=C9E96_10085
NZ_PYJX01000117.1	Protein Homology	CDS	12588	14012	.	+	0	ID=cds-WP_001519200.1;Parent=gene-C9E96_RS09865;Dbxref=GenBank:WP_001519200.1;Name=WP_001519200.1;Ontology_term=GO:0006400,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=miaB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459662.1;locus_tag=C9E96_RS09865;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=WP_001519200.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	14217	15263	.	+	.	ID=gene-C9E96_RS09870;Name=C9E96_RS09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09870;old_locus_tag=C9E96_10090
NZ_PYJX01000117.1	Protein Homology	CDS	14217	15263	.	+	0	ID=cds-WP_167850623.1;Parent=gene-C9E96_RS09870;Dbxref=GenBank:WP_167850623.1;Name=WP_167850623.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225825.1;locus_tag=C9E96_RS09870;product=PhoH family protein;protein_id=WP_167850623.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	15260	15733	.	+	.	ID=gene-C9E96_RS09875;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=C9E96_RS09875;old_locus_tag=C9E96_10095
NZ_PYJX01000117.1	Protein Homology	CDS	15260	15733	.	+	0	ID=cds-WP_000084477.1;Parent=gene-C9E96_RS09875;Dbxref=GenBank:WP_000084477.1;Name=WP_000084477.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=RNA nuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459660.1;locus_tag=C9E96_RS09875;product=rRNA maturation RNase YbeY;protein_id=WP_000084477.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	15891	16769	.	+	.	ID=gene-C9E96_RS09880;Name=corC;gbkey=Gene;gene=corC;gene_biotype=protein_coding;locus_tag=C9E96_RS09880;old_locus_tag=C9E96_10100
NZ_PYJX01000117.1	Protein Homology	CDS	15891	16769	.	+	0	ID=cds-WP_001278612.1;Parent=gene-C9E96_RS09880;Dbxref=GenBank:WP_001278612.1;Name=WP_001278612.1;Note=CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter (CNNM) family%2C and was characterized as belonging to a set of three proteins%2C at least one of which must be present for CorA to function.;Ontology_term=GO:0050660;gbkey=CDS;gene=corC;go_function=flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459659.1;locus_tag=C9E96_RS09880;product=CNNM family magnesium/cobalt transport protein CorC;protein_id=WP_001278612.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	16789	18327	.	+	.	ID=gene-C9E96_RS09885;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=C9E96_RS09885;old_locus_tag=C9E96_10105
NZ_PYJX01000117.1	Protein Homology	CDS	16789	18327	.	+	0	ID=cds-WP_080203783.1;Parent=gene-C9E96_RS09885;Dbxref=GenBank:WP_080203783.1;Name=WP_080203783.1;Ontology_term=GO:0042158,GO:0016410,GO:0016020;gbkey=CDS;gene=lnt;go_component=membrane|0016020||IEA;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipoprotein biosynthetic process|0042158||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459658.1;locus_tag=C9E96_RS09885;product=apolipoprotein N-acyltransferase;protein_id=WP_080203783.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	18682	19590	.	+	.	ID=gene-C9E96_RS09890;Name=C9E96_RS09890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09890;old_locus_tag=C9E96_10110
NZ_PYJX01000117.1	Protein Homology	CDS	18682	19590	.	+	0	ID=cds-WP_167852887.1;Parent=gene-C9E96_RS09890;Dbxref=GenBank:WP_167852887.1;Name=WP_167852887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308721.1;locus_tag=C9E96_RS09890;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_167852887.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	19750	20490	.	+	.	ID=gene-C9E96_RS09895;Name=gltJ;gbkey=Gene;gene=gltJ;gene_biotype=protein_coding;locus_tag=C9E96_RS09895;old_locus_tag=C9E96_10115
NZ_PYJX01000117.1	Protein Homology	CDS	19750	20490	.	+	0	ID=cds-WP_000020930.1;Parent=gene-C9E96_RS09895;Dbxref=GenBank:WP_000020930.1;Name=WP_000020930.1;gbkey=CDS;gene=gltJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459656.1;locus_tag=C9E96_RS09895;product=glutamate/aspartate ABC transporter permease GltJ;protein_id=WP_000020930.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	20490	21164	.	+	.	ID=gene-C9E96_RS09900;Name=gltK;gbkey=Gene;gene=gltK;gene_biotype=protein_coding;locus_tag=C9E96_RS09900;old_locus_tag=C9E96_10120
NZ_PYJX01000117.1	Protein Homology	CDS	20490	21164	.	+	0	ID=cds-WP_000272794.1;Parent=gene-C9E96_RS09900;Dbxref=GenBank:WP_000272794.1;Name=WP_000272794.1;gbkey=CDS;gene=gltK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459655.1;locus_tag=C9E96_RS09900;product=glutamate/aspartate ABC transporter permease GltK;protein_id=WP_000272794.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	21164	21889	.	+	.	ID=gene-C9E96_RS09905;Name=gltL;gbkey=Gene;gene=gltL;gene_biotype=protein_coding;locus_tag=C9E96_RS09905;old_locus_tag=C9E96_10125
NZ_PYJX01000117.1	Protein Homology	CDS	21164	21889	.	+	0	ID=cds-WP_000631369.1;Parent=gene-C9E96_RS09905;Dbxref=GenBank:WP_000631369.1;Name=WP_000631369.1;gbkey=CDS;gene=gltL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020245804.1;locus_tag=C9E96_RS09905;product=glutamate/aspartate ABC transporter ATP-binding protein GltL;protein_id=WP_000631369.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	22006	22941	.	+	.	ID=gene-C9E96_RS09910;Name=rihA;gbkey=Gene;gene=rihA;gene_biotype=protein_coding;locus_tag=C9E96_RS09910;old_locus_tag=C9E96_10130
NZ_PYJX01000117.1	Protein Homology	CDS	22006	22941	.	+	0	ID=cds-WP_001207430.1;Parent=gene-C9E96_RS09910;Dbxref=GenBank:WP_001207430.1;Name=WP_001207430.1;Ontology_term=GO:0006206,GO:0050263;gbkey=CDS;gene=rihA;go_function=ribosylpyrimidine nucleosidase activity|0050263||IEA;go_process=pyrimidine nucleobase metabolic process|0006206||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459653.1;locus_tag=C9E96_RS09910;product=pyrimidine-specific ribonucleoside hydrolase RihA;protein_id=WP_001207430.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	22973	24211	.	+	.	ID=gene-C9E96_RS09915;Name=C9E96_RS09915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09915;old_locus_tag=C9E96_10135
NZ_PYJX01000117.1	Protein Homology	CDS	22973	24211	.	+	0	ID=cds-WP_000498894.1;Parent=gene-C9E96_RS09915;Dbxref=GenBank:WP_000498894.1;Name=WP_000498894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459652.1;locus_tag=C9E96_RS09915;product=hypothetical protein;protein_id=WP_000498894.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	24287	25966	.	+	.	ID=gene-C9E96_RS09920;Name=hscC;gbkey=Gene;gene=hscC;gene_biotype=protein_coding;locus_tag=C9E96_RS09920;old_locus_tag=C9E96_10140
NZ_PYJX01000117.1	Protein Homology	CDS	24287	25966	.	+	0	ID=cds-WP_000368025.1;Parent=gene-C9E96_RS09920;Dbxref=GenBank:WP_000368025.1;Name=WP_000368025.1;gbkey=CDS;gene=hscC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459651.1;locus_tag=C9E96_RS09920;product=molecular chaperone HscC;protein_id=WP_000368025.1;transl_table=11
NZ_PYJX01000117.1	RefSeq	gene	25988	27300	.	-	.	ID=gene-C9E96_RS09925;Name=C9E96_RS09925;end_range=27300,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09925;old_locus_tag=C9E96_10145;partial=true
NZ_PYJX01000117.1	Protein Homology	CDS	25988	27300	.	-	2	ID=cds-WP_135494168.1;Parent=gene-C9E96_RS09925;Dbxref=GenBank:WP_135494168.1;Name=WP_135494168.1;end_range=27300,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459650.1;locus_tag=C9E96_RS09925;partial=true;product=J domain-containing protein;protein_id=WP_135494168.1;transl_table=11
##sequence-region NZ_PYJX01000162.1 1 27111
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000162.1	RefSeq	region	1	27111	.	+	.	ID=NZ_PYJX01000162.1:1..27111;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000162.1	RefSeq	gene	1	432	.	+	.	ID=gene-C9E96_RS14760;Name=C9E96_RS14760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14760;old_locus_tag=C9E96_15135;partial=true;start_range=.,1
NZ_PYJX01000162.1	Protein Homology	CDS	1	432	.	+	0	ID=cds-WP_135494347.1;Parent=gene-C9E96_RS14760;Dbxref=GenBank:WP_135494347.1;Name=WP_135494347.1;Ontology_term=GO:0035444,GO:0015099;gbkey=CDS;go_function=nickel cation transmembrane transporter activity|0015099||IEA;go_process=nickel cation transmembrane transport|0035444||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461941.1;locus_tag=C9E96_RS14760;partial=true;product=nickel/cobalt efflux transporter;protein_id=WP_135494347.1;start_range=.,1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	642	1400	.	-	.	ID=gene-C9E96_RS14765;Name=C9E96_RS14765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14765;old_locus_tag=C9E96_15140
NZ_PYJX01000162.1	Protein Homology	CDS	642	1400	.	-	0	ID=cds-WP_000134802.1;Parent=gene-C9E96_RS14765;Dbxref=GenBank:WP_000134802.1;Name=WP_000134802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461942.1;locus_tag=C9E96_RS14765;product=transcriptional regulator;protein_id=WP_000134802.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	1387	1893	.	-	.	ID=gene-C9E96_RS14770;Name=C9E96_RS14770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14770;old_locus_tag=C9E96_15145
NZ_PYJX01000162.1	Protein Homology	CDS	1387	1893	.	-	0	ID=cds-WP_000093338.1;Parent=gene-C9E96_RS14770;Dbxref=GenBank:WP_000093338.1;Name=WP_000093338.1;Ontology_term=GO:0006351;gbkey=CDS;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006777639.1;locus_tag=C9E96_RS14770;product=CaiF/GrlA family transcriptional regulator;protein_id=WP_000093338.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	2003	3085	.	-	.	ID=gene-C9E96_RS14775;Name=C9E96_RS14775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14775;old_locus_tag=C9E96_15150
NZ_PYJX01000162.1	Protein Homology	CDS	2003	3085	.	-	0	ID=cds-WP_023993962.1;Parent=gene-C9E96_RS14775;Dbxref=GenBank:WP_023993962.1;Name=WP_023993962.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000147761.1;locus_tag=C9E96_RS14775;product=fimbrial protein;protein_id=WP_023993962.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	3082	3825	.	-	.	ID=gene-C9E96_RS14780;Name=stdC;gbkey=Gene;gene=stdC;gene_biotype=protein_coding;locus_tag=C9E96_RS14780;old_locus_tag=C9E96_15155
NZ_PYJX01000162.1	Protein Homology	CDS	3082	3825	.	-	0	ID=cds-WP_023250444.1;Parent=gene-C9E96_RS14780;Dbxref=GenBank:WP_023250444.1;Name=WP_023250444.1;gbkey=CDS;gene=stdC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461944.1;locus_tag=C9E96_RS14780;product=fimbrial biogenesis chaperone StdC;protein_id=WP_023250444.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	3866	6355	.	-	.	ID=gene-C9E96_RS14785;Name=stdB;gbkey=Gene;gene=stdB;gene_biotype=protein_coding;locus_tag=C9E96_RS14785;old_locus_tag=C9E96_15160
NZ_PYJX01000162.1	Protein Homology	CDS	3866	6355	.	-	0	ID=cds-WP_023993961.1;Parent=gene-C9E96_RS14785;Dbxref=GenBank:WP_023993961.1;Name=WP_023993961.1;gbkey=CDS;gene=stdB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461945.1;locus_tag=C9E96_RS14785;product=fimbrial outer membrane usher protein StdB;protein_id=WP_023993961.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	6475	7059	.	-	.	ID=gene-C9E96_RS14790;Name=C9E96_RS14790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14790;old_locus_tag=C9E96_15165
NZ_PYJX01000162.1	Protein Homology	CDS	6475	7059	.	-	0	ID=cds-WP_023993960.1;Parent=gene-C9E96_RS14790;Dbxref=GenBank:WP_023993960.1;Name=WP_023993960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015406296.1;locus_tag=C9E96_RS14790;product=fimbrial protein;protein_id=WP_023993960.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	7778	8410	.	-	.	ID=gene-C9E96_RS14795;Name=C9E96_RS14795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14795;old_locus_tag=C9E96_15170
NZ_PYJX01000162.1	Protein Homology	CDS	7778	8410	.	-	0	ID=cds-WP_000835262.1;Parent=gene-C9E96_RS14795;Dbxref=GenBank:WP_000835262.1;Name=WP_000835262.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461947.1;locus_tag=C9E96_RS14795;product=YfdX family protein;protein_id=WP_000835262.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	8457	8993	.	-	.	ID=gene-C9E96_RS14800;Name=C9E96_RS14800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14800;old_locus_tag=C9E96_15175
NZ_PYJX01000162.1	Protein Homology	CDS	8457	8993	.	-	0	ID=cds-WP_001038500.1;Parent=gene-C9E96_RS14800;Dbxref=GenBank:WP_001038500.1;Name=WP_001038500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461948.1;locus_tag=C9E96_RS14800;product=STM3031 family outer membrane protein;protein_id=WP_001038500.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	9602	10162	.	-	.	ID=gene-C9E96_RS14810;Name=hxlB;gbkey=Gene;gene=hxlB;gene_biotype=protein_coding;locus_tag=C9E96_RS14810;old_locus_tag=C9E96_15185
NZ_PYJX01000162.1	Protein Homology	CDS	9602	10162	.	-	0	ID=cds-WP_000116120.1;Parent=gene-C9E96_RS14810;Dbxref=GenBank:WP_000116120.1;Name=WP_000116120.1;Ontology_term=GO:1901135,GO:0016853,GO:0043800;gbkey=CDS;gene=hxlB;go_function=isomerase activity|0016853||IEA,6-phospho-3-hexuloisomerase activity|0043800||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000116013.1;locus_tag=C9E96_RS14810;product=6-phospho-3-hexuloisomerase;protein_id=WP_000116120.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	10177	10929	.	-	.	ID=gene-C9E96_RS14815;Name=C9E96_RS14815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14815;old_locus_tag=C9E96_15190
NZ_PYJX01000162.1	Protein Homology	CDS	10177	10929	.	-	0	ID=cds-WP_000032693.1;Parent=gene-C9E96_RS14815;Dbxref=GenBank:WP_000032693.1;Name=WP_000032693.1;Ontology_term=GO:0016491,GO:0070403;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000064391.1;locus_tag=C9E96_RS14815;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_000032693.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	11052	11696	.	-	.	ID=gene-C9E96_RS14820;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=C9E96_RS14820;old_locus_tag=C9E96_15195
NZ_PYJX01000162.1	Protein Homology	CDS	11052	11696	.	-	0	ID=cds-WP_000057267.1;Parent=gene-C9E96_RS14820;Dbxref=GenBank:WP_000057267.1;Name=WP_000057267.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001062775.1;locus_tag=C9E96_RS14820;product=ribulose-phosphate 3-epimerase;protein_id=WP_000057267.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	11715	12968	.	-	.	ID=gene-C9E96_RS14825;Name=C9E96_RS14825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14825;old_locus_tag=C9E96_15200
NZ_PYJX01000162.1	Protein Homology	CDS	11715	12968	.	-	0	ID=cds-WP_135494349.1;Parent=gene-C9E96_RS14825;Dbxref=GenBank:WP_135494349.1;Name=WP_135494349.1;Ontology_term=GO:0009401,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000425551.1;locus_tag=C9E96_RS14825;product=PTS transporter subunit IIC;protein_id=WP_135494349.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	12996	13289	.	-	.	ID=gene-C9E96_RS14830;Name=C9E96_RS14830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14830;old_locus_tag=C9E96_15205
NZ_PYJX01000162.1	Protein Homology	CDS	12996	13289	.	-	0	ID=cds-WP_000628511.1;Parent=gene-C9E96_RS14830;Dbxref=GenBank:WP_000628511.1;Name=WP_000628511.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004105500.1;locus_tag=C9E96_RS14830;product=PTS sugar transporter subunit IIB;protein_id=WP_000628511.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	13311	13790	.	-	.	ID=gene-C9E96_RS14835;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=C9E96_RS14835;old_locus_tag=C9E96_15210
NZ_PYJX01000162.1	Protein Homology	CDS	13311	13790	.	-	0	ID=cds-WP_023993959.1;Parent=gene-C9E96_RS14835;Dbxref=GenBank:WP_023993959.1;Name=WP_023993959.1;gbkey=CDS;gene=gatA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012512955.1;locus_tag=C9E96_RS14835;product=PTS galactitol transporter subunit IIA;protein_id=WP_023993959.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	14109	14864	.	-	.	ID=gene-C9E96_RS14840;Name=C9E96_RS14840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14840;old_locus_tag=C9E96_15215
NZ_PYJX01000162.1	Protein Homology	CDS	14109	14864	.	-	0	ID=cds-WP_001531807.1;Parent=gene-C9E96_RS14840;Dbxref=GenBank:WP_001531807.1;Name=WP_001531807.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000281586.1;locus_tag=C9E96_RS14840;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_001531807.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	15245	15781	.	+	.	ID=gene-C9E96_RS14845;Name=C9E96_RS14845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14845;old_locus_tag=C9E96_15220
NZ_PYJX01000162.1	Protein Homology	CDS	15245	15781	.	+	0	ID=cds-WP_000850102.1;Parent=gene-C9E96_RS14845;Dbxref=GenBank:WP_000850102.1;Name=WP_000850102.1;Ontology_term=GO:0005975,GO:0016853;gbkey=CDS;go_function=isomerase activity|0016853||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000850105.1;locus_tag=C9E96_RS14845;product=RpiB/LacA/LacB family sugar-phosphate isomerase;protein_id=WP_000850102.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	15785	17155	.	+	.	ID=gene-C9E96_RS14850;Name=C9E96_RS14850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14850;old_locus_tag=C9E96_15225
NZ_PYJX01000162.1	Protein Homology	CDS	15785	17155	.	+	0	ID=cds-WP_023993958.1;Parent=gene-C9E96_RS14850;Dbxref=GenBank:WP_023993958.1;Name=WP_023993958.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015964568.1;locus_tag=C9E96_RS14850;product=PTS galactitol transporter subunit IIC;protein_id=WP_023993958.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	17177	17461	.	+	.	ID=gene-C9E96_RS14855;Name=C9E96_RS14855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14855;old_locus_tag=C9E96_15230
NZ_PYJX01000162.1	Protein Homology	CDS	17177	17461	.	+	0	ID=cds-WP_000723161.1;Parent=gene-C9E96_RS14855;Dbxref=GenBank:WP_000723161.1;Name=WP_000723161.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014172369.1;locus_tag=C9E96_RS14855;product=PTS sugar transporter subunit IIB;protein_id=WP_000723161.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	17469	17927	.	+	.	ID=gene-C9E96_RS14860;Name=C9E96_RS14860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14860;old_locus_tag=C9E96_15235
NZ_PYJX01000162.1	Protein Homology	CDS	17469	17927	.	+	0	ID=cds-WP_001683480.1;Parent=gene-C9E96_RS14860;Dbxref=GenBank:WP_001683480.1;Name=WP_001683480.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001683480.1;locus_tag=C9E96_RS14860;product=PTS sugar transporter subunit IIA;protein_id=WP_001683480.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	18101	19066	.	-	.	ID=gene-C9E96_RS14865;Name=C9E96_RS14865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14865;old_locus_tag=C9E96_15240
NZ_PYJX01000162.1	Protein Homology	CDS	18101	19066	.	-	0	ID=cds-WP_001123709.1;Parent=gene-C9E96_RS14865;Dbxref=GenBank:WP_001123709.1;Name=WP_001123709.1;Ontology_term=GO:0006355,GO:0003677,GO:0030246;gbkey=CDS;go_function=DNA binding|0003677||IEA,carbohydrate binding|0030246||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524950.1;locus_tag=C9E96_RS14865;product=sugar-binding transcriptional regulator;protein_id=WP_001123709.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	pseudogene	19280	19453	.	-	.	ID=gene-C9E96_RS14870;Name=C9E96_RS14870;end_range=19453,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS14870;old_locus_tag=C9E96_15245;partial=true;pseudo=true
NZ_PYJX01000162.1	Protein Homology	CDS	19280	19453	.	-	0	ID=cds-C9E96_RS14870;Parent=gene-C9E96_RS14870;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=19453,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312402.1;locus_tag=C9E96_RS14870;partial=true;product=arsenate reductase;pseudo=true;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	19533	19883	.	-	.	ID=gene-C9E96_RS14875;Name=arsR;gbkey=Gene;gene=arsR;gene_biotype=protein_coding;locus_tag=C9E96_RS14875;old_locus_tag=C9E96_15250
NZ_PYJX01000162.1	Protein Homology	CDS	19533	19883	.	-	0	ID=cds-WP_023993955.1;Parent=gene-C9E96_RS14875;Dbxref=GenBank:WP_023993955.1;Name=WP_023993955.1;gbkey=CDS;gene=arsR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004206664.1;locus_tag=C9E96_RS14875;product=As(III)-sensing metalloregulatory transcriptional repressor ArsR;protein_id=WP_023993955.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	20038	21141	.	-	.	ID=gene-C9E96_RS14880;Name=C9E96_RS14880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14880;old_locus_tag=C9E96_15255
NZ_PYJX01000162.1	Protein Homology	CDS	20038	21141	.	-	0	ID=cds-WP_023993954.1;Parent=gene-C9E96_RS14880;Dbxref=GenBank:WP_023993954.1;Name=WP_023993954.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011192954.1;locus_tag=C9E96_RS14880;product=tyrosine-type recombinase/integrase;protein_id=WP_023993954.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	21306	21379	.	-	.	ID=gene-C9E96_RS14885;Name=C9E96_RS14885;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS14885;old_locus_tag=C9E96_15260
NZ_PYJX01000162.1	tRNAscan-SE	tRNA	21306	21379	.	-	.	ID=rna-C9E96_RS14885;Parent=gene-C9E96_RS14885;anticodon=(pos:complement(21345..21347));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14885;product=tRNA-Gly
NZ_PYJX01000162.1	tRNAscan-SE	exon	21306	21379	.	-	.	ID=exon-C9E96_RS14885-1;Parent=rna-C9E96_RS14885;anticodon=(pos:complement(21345..21347));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS14885;product=tRNA-Gly
NZ_PYJX01000162.1	RefSeq	gene	21459	22217	.	-	.	ID=gene-C9E96_RS14890;Name=actS;gbkey=Gene;gene=actS;gene_biotype=protein_coding;locus_tag=C9E96_RS14890;old_locus_tag=C9E96_15265
NZ_PYJX01000162.1	Protein Homology	CDS	21459	22217	.	-	0	ID=cds-WP_000244328.1;Parent=gene-C9E96_RS14890;Dbxref=GenBank:WP_000244328.1;Name=WP_000244328.1;gbkey=CDS;gene=actS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461954.1;locus_tag=C9E96_RS14890;product=amidase activator ActS;protein_id=WP_000244328.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	22482	23027	.	+	.	ID=gene-C9E96_RS14895;Name=idi;gbkey=Gene;gene=idi;gene_biotype=protein_coding;locus_tag=C9E96_RS14895;old_locus_tag=C9E96_15275
NZ_PYJX01000162.1	Protein Homology	CDS	22482	23027	.	+	0	ID=cds-WP_000133994.1;Parent=gene-C9E96_RS14895;Dbxref=GenBank:WP_000133994.1;Name=WP_000133994.1;Ontology_term=GO:0008299,GO:0004452;gbkey=CDS;gene=idi;go_function=isopentenyl-diphosphate delta-isomerase activity|0004452||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461955.1;locus_tag=C9E96_RS14895;product=isopentenyl-diphosphate Delta-isomerase;protein_id=WP_000133994.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	23103	24620	.	-	.	ID=gene-C9E96_RS14900;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=C9E96_RS14900;old_locus_tag=C9E96_15280
NZ_PYJX01000162.1	Protein Homology	CDS	23103	24620	.	-	0	ID=cds-WP_000003339.1;Parent=gene-C9E96_RS14900;Dbxref=GenBank:WP_000003339.1;Name=WP_000003339.1;Ontology_term=GO:0006430,GO:0004824,GO:0005524,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740376.1;locus_tag=C9E96_RS14900;product=lysine--tRNA ligase;protein_id=WP_000003339.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	gene	24630	25728	.	-	.	ID=gene-C9E96_RS14905;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=C9E96_RS14905;old_locus_tag=C9E96_15285
NZ_PYJX01000162.1	Protein Homology	CDS	25654	25728	.	-	0	ID=cds-WP_096059418.1;Parent=gene-C9E96_RS14905;Dbxref=GenBank:WP_096059418.1;Name=WP_096059418.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311790.1;locus_tag=C9E96_RS14905;product=peptide chain release factor 2;protein_id=WP_096059418.1;transl_table=11
NZ_PYJX01000162.1	Protein Homology	CDS	24630	25652	.	-	0	ID=cds-WP_096059418.1;Parent=gene-C9E96_RS14905;Dbxref=GenBank:WP_096059418.1;Name=WP_096059418.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311790.1;locus_tag=C9E96_RS14905;product=peptide chain release factor 2;protein_id=WP_096059418.1;transl_table=11
NZ_PYJX01000162.1	RefSeq	pseudogene	25833	26999	.	-	.	ID=gene-C9E96_RS14910;Name=C9E96_RS14910;end_range=26999,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS14910;old_locus_tag=C9E96_15290;partial=true;pseudo=true
NZ_PYJX01000162.1	Protein Homology	CDS	25833	26999	.	-	0	ID=cds-C9E96_RS14910;Parent=gene-C9E96_RS14910;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0003676;end_range=26999,.;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461958.1;locus_tag=C9E96_RS14910;partial=true;product=DHHA1 domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000033.1 1 97840
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000033.1	RefSeq	region	1	97840	.	+	.	ID=NZ_PYJX01000033.1:1..97840;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000033.1	RefSeq	gene	1	822	.	-	.	ID=gene-C9E96_RS01570;Name=C9E96_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01570;old_locus_tag=C9E96_01600;partial=true;start_range=.,1
NZ_PYJX01000033.1	Protein Homology	CDS	1	822	.	-	0	ID=cds-WP_135493769.1;Parent=gene-C9E96_RS01570;Dbxref=GenBank:WP_135493769.1;Name=WP_135493769.1;Ontology_term=GO:0016298,GO:0052689;gbkey=CDS;go_function=lipase activity|0016298||IEA,carboxylic ester hydrolase activity|0052689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460582.1;locus_tag=C9E96_RS01570;partial=true;product=carboxylesterase/lipase family protein;protein_id=WP_135493769.1;start_range=.,1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	871	2214	.	-	.	ID=gene-C9E96_RS01575;Name=hglS;gbkey=Gene;gene=hglS;gene_biotype=protein_coding;gene_synonym=ydcJ;locus_tag=C9E96_RS01575;old_locus_tag=C9E96_01605
NZ_PYJX01000033.1	Protein Homology	CDS	871	2214	.	-	0	ID=cds-WP_135493771.1;Parent=gene-C9E96_RS01575;Dbxref=GenBank:WP_135493771.1;Name=WP_135493771.1;Ontology_term=GO:0051213;gbkey=CDS;gene=hglS;go_function=dioxygenase activity|0051213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460583.1;locus_tag=C9E96_RS01575;product=2-oxoadipate dioxygenase/decarboxylase HglS;protein_id=WP_135493771.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	2507	3430	.	+	.	ID=gene-C9E96_RS01580;Name=C9E96_RS01580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01580;old_locus_tag=C9E96_01610
NZ_PYJX01000033.1	Protein Homology	CDS	2507	3430	.	+	0	ID=cds-WP_000414259.1;Parent=gene-C9E96_RS01580;Dbxref=GenBank:WP_000414259.1;Name=WP_000414259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460584.1;locus_tag=C9E96_RS01580;product=LysR substrate-binding domain-containing protein;protein_id=WP_000414259.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	3491	5116	.	-	.	ID=gene-C9E96_RS01585;Name=C9E96_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01585;old_locus_tag=C9E96_01615
NZ_PYJX01000033.1	Protein Homology	CDS	3491	5116	.	-	0	ID=cds-WP_135493773.1;Parent=gene-C9E96_RS01585;Dbxref=GenBank:WP_135493773.1;Name=WP_135493773.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460585.2;locus_tag=C9E96_RS01585;product=methyl-accepting chemotaxis protein;protein_id=WP_135493773.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	5285	6403	.	-	.	ID=gene-C9E96_RS01595;Name=C9E96_RS01595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01595;old_locus_tag=C9E96_01625
NZ_PYJX01000033.1	Protein Homology	CDS	5285	6403	.	-	0	ID=cds-WP_000842135.1;Parent=gene-C9E96_RS01595;Dbxref=GenBank:WP_000842135.1;Name=WP_000842135.1;Ontology_term=GO:0004022,GO:0008270,GO:0051903;gbkey=CDS;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,zinc ion binding|0008270||IEA,S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity|0051903||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460586.1;locus_tag=C9E96_RS01595;product=S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase;protein_id=WP_000842135.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	6435	6710	.	-	.	ID=gene-C9E96_RS01600;Name=C9E96_RS01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01600;old_locus_tag=C9E96_01630
NZ_PYJX01000033.1	Protein Homology	CDS	6435	6710	.	-	0	ID=cds-WP_001120770.1;Parent=gene-C9E96_RS01600;Dbxref=GenBank:WP_001120770.1;Name=WP_001120770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460587.1;locus_tag=C9E96_RS01600;product=metal/formaldehyde-sensitive transcriptional repressor;protein_id=WP_001120770.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	7233	7634	.	+	.	ID=gene-C9E96_RS01605;Name=steB;gbkey=Gene;gene=steB;gene_biotype=protein_coding;locus_tag=C9E96_RS01605;old_locus_tag=C9E96_01635
NZ_PYJX01000033.1	Protein Homology	CDS	7233	7634	.	+	0	ID=cds-WP_001540100.1;Parent=gene-C9E96_RS01605;Dbxref=GenBank:WP_001540100.1;Name=WP_001540100.1;gbkey=CDS;gene=steB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448047.1;locus_tag=C9E96_RS01605;product=type III secretion system effector SteB;protein_id=WP_001540100.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	7763	8479	.	-	.	ID=gene-C9E96_RS01610;Name=C9E96_RS01610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01610;old_locus_tag=C9E96_01640
NZ_PYJX01000033.1	Protein Homology	CDS	7763	8479	.	-	0	ID=cds-WP_000997195.1;Parent=gene-C9E96_RS01610;Dbxref=GenBank:WP_000997195.1;Name=WP_000997195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460589.1;locus_tag=C9E96_RS01610;product=membrane protein;protein_id=WP_000997195.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	8905	10131	.	+	.	ID=gene-C9E96_RS01615;Name=sseJ;gbkey=Gene;gene=sseJ;gene_biotype=protein_coding;locus_tag=C9E96_RS01615;old_locus_tag=C9E96_01645
NZ_PYJX01000033.1	Protein Homology	CDS	8905	10131	.	+	0	ID=cds-WP_023993289.1;Parent=gene-C9E96_RS01615;Dbxref=GenBank:WP_023993289.1;Name=WP_023993289.1;gbkey=CDS;gene=sseJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460590.1;locus_tag=C9E96_RS01615;product=SPI-2 type III secretion system effector SseJ;protein_id=WP_023993289.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	10252	10596	.	-	.	ID=gene-C9E96_RS01620;Name=C9E96_RS01620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01620;old_locus_tag=C9E96_01650
NZ_PYJX01000033.1	Protein Homology	CDS	10252	10596	.	-	0	ID=cds-WP_000281185.1;Parent=gene-C9E96_RS01620;Dbxref=GenBank:WP_000281185.1;Name=WP_000281185.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460591.1;locus_tag=C9E96_RS01620;product=DUF1294 domain-containing protein;protein_id=WP_000281185.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	11503	12264	.	+	.	ID=gene-C9E96_RS01625;Name=C9E96_RS01625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01625;old_locus_tag=C9E96_01655
NZ_PYJX01000033.1	Protein Homology	CDS	11503	12264	.	+	0	ID=cds-WP_000949370.1;Parent=gene-C9E96_RS01625;Dbxref=GenBank:WP_000949370.1;Name=WP_000949370.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460592.1;locus_tag=C9E96_RS01625;product=transporter substrate-binding domain-containing protein;protein_id=WP_000949370.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	12271	12918	.	+	.	ID=gene-C9E96_RS01630;Name=C9E96_RS01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01630;old_locus_tag=C9E96_01660
NZ_PYJX01000033.1	Protein Homology	CDS	12271	12918	.	+	0	ID=cds-WP_000094446.1;Parent=gene-C9E96_RS01630;Dbxref=GenBank:WP_000094446.1;Name=WP_000094446.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460593.1;locus_tag=C9E96_RS01630;product=amino acid ABC transporter permease;protein_id=WP_000094446.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	12943	13674	.	+	.	ID=gene-C9E96_RS01635;Name=C9E96_RS01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01635;old_locus_tag=C9E96_01665
NZ_PYJX01000033.1	Protein Homology	CDS	12943	13674	.	+	0	ID=cds-WP_001196340.1;Parent=gene-C9E96_RS01635;Dbxref=GenBank:WP_001196340.1;Name=WP_001196340.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460594.1;locus_tag=C9E96_RS01635;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_001196340.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	13671	14351	.	+	.	ID=gene-C9E96_RS01640;Name=C9E96_RS01640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01640;old_locus_tag=C9E96_01670
NZ_PYJX01000033.1	Protein Homology	CDS	13671	14351	.	+	0	ID=cds-WP_000560166.1;Parent=gene-C9E96_RS01640;Dbxref=GenBank:WP_000560166.1;Name=WP_000560166.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460595.1;locus_tag=C9E96_RS01640;product=amino acid ABC transporter permease;protein_id=WP_000560166.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	14488	16038	.	+	.	ID=gene-C9E96_RS01645;Name=C9E96_RS01645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01645;old_locus_tag=C9E96_01675
NZ_PYJX01000033.1	Protein Homology	CDS	14488	16038	.	+	0	ID=cds-WP_001537477.1;Parent=gene-C9E96_RS01645;Dbxref=GenBank:WP_001537477.1;Name=WP_001537477.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460596.1;locus_tag=C9E96_RS01645;product=glycosyltransferase family 39 protein;protein_id=WP_001537477.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	16502	17164	.	+	.	ID=gene-C9E96_RS01650;Name=C9E96_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01650;old_locus_tag=C9E96_01680
NZ_PYJX01000033.1	Protein Homology	CDS	16502	17164	.	+	0	ID=cds-WP_001520112.1;Parent=gene-C9E96_RS01650;Dbxref=GenBank:WP_001520112.1;Name=WP_001520112.1;Ontology_term=GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001551832.1;locus_tag=C9E96_RS01650;product=class I SAM-dependent methyltransferase;protein_id=WP_001520112.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	17435	17965	.	-	.	ID=gene-C9E96_RS01655;Name=cybB;gbkey=Gene;gene=cybB;gene_biotype=protein_coding;locus_tag=C9E96_RS01655;old_locus_tag=C9E96_01685
NZ_PYJX01000033.1	Protein Homology	CDS	17435	17965	.	-	0	ID=cds-WP_000527277.1;Parent=gene-C9E96_RS01655;Dbxref=GenBank:WP_000527277.1;Name=WP_000527277.1;Ontology_term=GO:0022904,GO:0009055,GO:0016020;gbkey=CDS;gene=cybB;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460598.1;locus_tag=C9E96_RS01655;product=cytochrome b561;protein_id=WP_000527277.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	18082	18882	.	-	.	ID=gene-C9E96_RS01660;Name=C9E96_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01660;old_locus_tag=C9E96_01690
NZ_PYJX01000033.1	Protein Homology	CDS	18082	18882	.	-	0	ID=cds-WP_001098512.1;Parent=gene-C9E96_RS01660;Dbxref=GenBank:WP_001098512.1;Name=WP_001098512.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460599.1;locus_tag=C9E96_RS01660;product=YdcF family protein;protein_id=WP_001098512.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	18946	22848	.	-	.	ID=gene-C9E96_RS01665;Name=hrpA;gbkey=Gene;gene=hrpA;gene_biotype=protein_coding;locus_tag=C9E96_RS01665;old_locus_tag=C9E96_01695
NZ_PYJX01000033.1	Protein Homology	CDS	18946	22848	.	-	0	ID=cds-WP_135493775.1;Parent=gene-C9E96_RS01665;Dbxref=GenBank:WP_135493775.1;Name=WP_135493775.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=hrpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460600.3;locus_tag=C9E96_RS01665;product=ATP-dependent RNA helicase HrpA;protein_id=WP_135493775.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	23049	23654	.	+	.	ID=gene-C9E96_RS01670;Name=azoR;gbkey=Gene;gene=azoR;gene_biotype=protein_coding;locus_tag=C9E96_RS01670;old_locus_tag=C9E96_01700
NZ_PYJX01000033.1	Protein Homology	CDS	23049	23654	.	+	0	ID=cds-WP_000048924.1;Parent=gene-C9E96_RS01670;Dbxref=GenBank:WP_000048924.1;Name=WP_000048924.1;gbkey=CDS;gene=azoR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460601.1;locus_tag=C9E96_RS01670;product=FMN-dependent NADH-azoreductase;protein_id=WP_000048924.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	23651	24100	.	-	.	ID=gene-C9E96_RS01675;Name=C9E96_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01675;old_locus_tag=C9E96_01705
NZ_PYJX01000033.1	Protein Homology	CDS	23651	24100	.	-	0	ID=cds-WP_001518898.1;Parent=gene-C9E96_RS01675;Dbxref=GenBank:WP_001518898.1;Name=WP_001518898.1;Ontology_term=GO:0016846,GO:0046872;gbkey=CDS;go_function=carbon-sulfur lyase activity|0016846||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460602.1;locus_tag=C9E96_RS01675;product=GFA family protein;protein_id=WP_001518898.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	24243	24566	.	-	.	ID=gene-C9E96_RS01680;Name=C9E96_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01680;old_locus_tag=C9E96_01710
NZ_PYJX01000033.1	Protein Homology	CDS	24243	24566	.	-	0	ID=cds-WP_000760345.1;Parent=gene-C9E96_RS01680;Dbxref=GenBank:WP_000760345.1;Name=WP_000760345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460603.1;locus_tag=C9E96_RS01680;product=YdbL family protein;protein_id=WP_000760345.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	24574	24765	.	-	.	ID=gene-C9E96_RS01685;Name=C9E96_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01685;old_locus_tag=C9E96_01715
NZ_PYJX01000033.1	Protein Homology	CDS	24574	24765	.	-	0	ID=cds-WP_000784063.1;Parent=gene-C9E96_RS01685;Dbxref=GenBank:WP_000784063.1;Name=WP_000784063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460604.1;locus_tag=C9E96_RS01685;product=YnbE family lipoprotein;protein_id=WP_000784063.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	24765	27401	.	-	.	ID=gene-C9E96_RS01690;Name=C9E96_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01690;old_locus_tag=C9E96_01720
NZ_PYJX01000033.1	Protein Homology	CDS	24765	27401	.	-	0	ID=cds-WP_080203677.1;Parent=gene-C9E96_RS01690;Dbxref=GenBank:WP_080203677.1;Name=WP_080203677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460605.1;locus_tag=C9E96_RS01690;product=YdbH family protein;protein_id=WP_080203677.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	27641	28630	.	+	.	ID=gene-C9E96_RS01695;Name=ldhA;gbkey=Gene;gene=ldhA;gene_biotype=protein_coding;locus_tag=C9E96_RS01695;old_locus_tag=C9E96_01725
NZ_PYJX01000033.1	Protein Homology	CDS	27641	28630	.	+	0	ID=cds-WP_000762206.1;Parent=gene-C9E96_RS01695;Dbxref=GenBank:WP_000762206.1;Name=WP_000762206.1;gbkey=CDS;gene=ldhA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460606.1;locus_tag=C9E96_RS01695;product=D-lactate dehydrogenase;protein_id=WP_000762206.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	28741	29151	.	+	.	ID=gene-C9E96_RS01700;Name=hslJ;gbkey=Gene;gene=hslJ;gene_biotype=protein_coding;locus_tag=C9E96_RS01700;old_locus_tag=C9E96_01730
NZ_PYJX01000033.1	Protein Homology	CDS	28741	29151	.	+	0	ID=cds-WP_000725242.1;Parent=gene-C9E96_RS01700;Dbxref=GenBank:WP_000725242.1;Name=WP_000725242.1;gbkey=CDS;gene=hslJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460607.1;locus_tag=C9E96_RS01700;product=heat shock protein HslJ;protein_id=WP_000725242.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	29195	29461	.	-	.	ID=gene-C9E96_RS01705;Name=C9E96_RS01705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01705;old_locus_tag=C9E96_01735
NZ_PYJX01000033.1	Protein Homology	CDS	29195	29461	.	-	0	ID=cds-WP_001200679.1;Parent=gene-C9E96_RS01705;Dbxref=GenBank:WP_001200679.1;Name=WP_001200679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588453.1;locus_tag=C9E96_RS01705;product=putative hemolysin;protein_id=WP_001200679.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	29377	29676	.	+	.	ID=gene-C9E96_RS01710;Name=C9E96_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01710;old_locus_tag=C9E96_01740
NZ_PYJX01000033.1	Protein Homology	CDS	29377	29676	.	+	0	ID=cds-WP_001137722.1;Parent=gene-C9E96_RS01710;Dbxref=GenBank:WP_001137722.1;Name=WP_001137722.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460609.1;locus_tag=C9E96_RS01710;product=hypothetical protein;protein_id=WP_001137722.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	29737	33261	.	+	.	ID=gene-C9E96_RS01715;Name=nifJ;gbkey=Gene;gene=nifJ;gene_biotype=protein_coding;locus_tag=C9E96_RS01715;old_locus_tag=C9E96_01745
NZ_PYJX01000033.1	Protein Homology	CDS	29737	33261	.	+	0	ID=cds-WP_001193248.1;Parent=gene-C9E96_RS01715;Dbxref=GenBank:WP_001193248.1;Name=WP_001193248.1;Ontology_term=GO:0022900,GO:0005506,GO:0016903,GO:0030976;gbkey=CDS;gene=nifJ;go_function=iron ion binding|0005506||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors|0016903||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460610.1;locus_tag=C9E96_RS01715;product=pyruvate:ferredoxin (flavodoxin) oxidoreductase;protein_id=WP_001193248.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	33743	34177	.	+	.	ID=gene-C9E96_RS01720;Name=uspF;gbkey=Gene;gene=uspF;gene_biotype=protein_coding;locus_tag=C9E96_RS01720;old_locus_tag=C9E96_01755
NZ_PYJX01000033.1	Protein Homology	CDS	33743	34177	.	+	0	ID=cds-WP_001082296.1;Parent=gene-C9E96_RS01720;Dbxref=GenBank:WP_001082296.1;Name=WP_001082296.1;gbkey=CDS;gene=uspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460611.1;locus_tag=C9E96_RS01720;product=universal stress protein UspF;protein_id=WP_001082296.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	34227	34565	.	-	.	ID=gene-C9E96_RS01725;Name=C9E96_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01725;old_locus_tag=C9E96_01760
NZ_PYJX01000033.1	Protein Homology	CDS	34227	34565	.	-	0	ID=cds-WP_000159240.1;Parent=gene-C9E96_RS01725;Dbxref=GenBank:WP_000159240.1;Name=WP_000159240.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460612.1;locus_tag=C9E96_RS01725;product=SMR family transporter;protein_id=WP_000159240.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	34558	34710	.	-	.	ID=gene-C9E96_RS24410;Name=C9E96_RS24410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24410;old_locus_tag=C9E96_01765
NZ_PYJX01000033.1	Protein Homology	CDS	34558	34710	.	-	0	ID=cds-WP_000089155.1;Parent=gene-C9E96_RS24410;Dbxref=GenBank:WP_000089155.1;Name=WP_000089155.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465579.1;locus_tag=C9E96_RS24410;product=hypothetical protein;protein_id=WP_000089155.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	pseudogene	34666	34869	.	+	.	ID=gene-C9E96_RS01735;Name=C9E96_RS01735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01735;old_locus_tag=C9E96_01770;partial=true;pseudo=true;start_range=.,34666
NZ_PYJX01000033.1	Protein Homology	CDS	34666	34869	.	+	0	ID=cds-C9E96_RS01735;Parent=gene-C9E96_RS01735;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309956.1;locus_tag=C9E96_RS01735;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,34666;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	34921	35856	.	+	.	ID=gene-C9E96_RS01740;Name=ttcA;gbkey=Gene;gene=ttcA;gene_biotype=protein_coding;locus_tag=C9E96_RS01740;old_locus_tag=C9E96_01775
NZ_PYJX01000033.1	Protein Homology	CDS	34921	35856	.	+	0	ID=cds-WP_001156218.1;Parent=gene-C9E96_RS01740;Dbxref=GenBank:WP_001156218.1;Name=WP_001156218.1;Ontology_term=GO:0008033;gbkey=CDS;gene=ttcA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460613.1;locus_tag=C9E96_RS01740;product=tRNA 2-thiocytidine(32) synthetase TtcA;protein_id=WP_001156218.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	35900	37273	.	-	.	ID=gene-C9E96_RS01745;Name=dbpA;gbkey=Gene;gene=dbpA;gene_biotype=protein_coding;locus_tag=C9E96_RS01745;old_locus_tag=C9E96_01780
NZ_PYJX01000033.1	Protein Homology	CDS	35900	37273	.	-	0	ID=cds-WP_023993294.1;Parent=gene-C9E96_RS01745;Dbxref=GenBank:WP_023993294.1;Name=WP_023993294.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=dbpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460614.1;locus_tag=C9E96_RS01745;product=ATP-dependent RNA helicase DbpA;protein_id=WP_023993294.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	37302	37484	.	-	.	ID=gene-C9E96_RS24485;Name=C9E96_RS24485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24485;old_locus_tag=C9E96_01785
NZ_PYJX01000033.1	Protein Homology	CDS	37302	37484	.	-	0	ID=cds-WP_015405931.1;Parent=gene-C9E96_RS24485;Dbxref=GenBank:WP_015405931.1;Name=WP_015405931.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF048180.1;locus_tag=C9E96_RS24485;product=hypothetical protein;protein_id=WP_015405931.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	37760	38743	.	-	.	ID=gene-C9E96_RS01755;Name=zntB;gbkey=Gene;gene=zntB;gene_biotype=protein_coding;locus_tag=C9E96_RS01755;old_locus_tag=C9E96_01790
NZ_PYJX01000033.1	Protein Homology	CDS	37760	38743	.	-	0	ID=cds-WP_000387373.1;Parent=gene-C9E96_RS01755;Dbxref=GenBank:WP_000387373.1;Name=WP_000387373.1;Ontology_term=GO:0071577,GO:0005385,GO:0005886;gbkey=CDS;gene=zntB;go_component=plasma membrane|0005886||IEA;go_function=zinc ion transmembrane transporter activity|0005385||IEA;go_process=zinc ion transmembrane transport|0071577||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460615.1;locus_tag=C9E96_RS01755;product=zinc transporter ZntB;protein_id=WP_000387373.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	38889	40043	.	-	.	ID=gene-C9E96_RS01760;Name=C9E96_RS01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01760;old_locus_tag=C9E96_01795
NZ_PYJX01000033.1	Protein Homology	CDS	38889	40043	.	-	0	ID=cds-WP_023993295.1;Parent=gene-C9E96_RS01760;Dbxref=GenBank:WP_023993295.1;Name=WP_023993295.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460616.1;locus_tag=C9E96_RS01760;product=methyl-accepting chemotaxis protein;protein_id=WP_023993295.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	40436	40999	.	-	.	ID=gene-C9E96_RS01765;Name=smrA;gbkey=Gene;gene=smrA;gene_biotype=protein_coding;locus_tag=C9E96_RS01765;old_locus_tag=C9E96_01800
NZ_PYJX01000033.1	Protein Homology	CDS	40436	40999	.	-	0	ID=cds-WP_001046799.1;Parent=gene-C9E96_RS01765;Dbxref=GenBank:WP_001046799.1;Name=WP_001046799.1;gbkey=CDS;gene=smrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460617.1;locus_tag=C9E96_RS01765;product=DNA endonuclease SmrA;protein_id=WP_001046799.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	41257	41772	.	+	.	ID=gene-C9E96_RS01770;Name=ogt;gbkey=Gene;gene=ogt;gene_biotype=protein_coding;locus_tag=C9E96_RS01770;old_locus_tag=C9E96_01805
NZ_PYJX01000033.1	Protein Homology	CDS	41257	41772	.	+	0	ID=cds-WP_000945036.1;Parent=gene-C9E96_RS01770;Dbxref=GenBank:WP_000945036.1;Name=WP_000945036.1;Ontology_term=GO:0006281,GO:0003908;gbkey=CDS;gene=ogt;go_function=methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460618.1;locus_tag=C9E96_RS01770;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=WP_000945036.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	41968	42720	.	+	.	ID=gene-C9E96_RS01775;Name=fnr;gbkey=Gene;gene=fnr;gene_biotype=protein_coding;locus_tag=C9E96_RS01775;old_locus_tag=C9E96_01810
NZ_PYJX01000033.1	Protein Homology	CDS	41968	42720	.	+	0	ID=cds-WP_000611914.1;Parent=gene-C9E96_RS01775;Dbxref=GenBank:WP_000611914.1;Name=WP_000611914.1;gbkey=CDS;gene=fnr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007849744.1;locus_tag=C9E96_RS01775;product=fumarate/nitrate reduction transcriptional regulator Fnr;protein_id=WP_000611914.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	42871	43818	.	+	.	ID=gene-C9E96_RS01780;Name=uspE;gbkey=Gene;gene=uspE;gene_biotype=protein_coding;locus_tag=C9E96_RS01780;old_locus_tag=C9E96_01815
NZ_PYJX01000033.1	Protein Homology	CDS	42871	43818	.	+	0	ID=cds-WP_001262138.1;Parent=gene-C9E96_RS01780;Dbxref=GenBank:WP_001262138.1;Name=WP_001262138.1;gbkey=CDS;gene=uspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460620.1;locus_tag=C9E96_RS01780;product=universal stress protein UspE;protein_id=WP_001262138.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	43873	44127	.	-	.	ID=gene-C9E96_RS01785;Name=C9E96_RS01785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01785;old_locus_tag=C9E96_01820
NZ_PYJX01000033.1	Protein Homology	CDS	43873	44127	.	-	0	ID=cds-WP_000605339.1;Parent=gene-C9E96_RS01785;Dbxref=GenBank:WP_000605339.1;Name=WP_000605339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460621.1;locus_tag=C9E96_RS01785;product=DUF2534 family protein;protein_id=WP_000605339.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	44366	45397	.	+	.	ID=gene-C9E96_RS01790;Name=C9E96_RS01790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01790;old_locus_tag=C9E96_01825
NZ_PYJX01000033.1	Protein Homology	CDS	44366	45397	.	+	0	ID=cds-WP_000493665.1;Parent=gene-C9E96_RS01790;Dbxref=GenBank:WP_000493665.1;Name=WP_000493665.1;Ontology_term=GO:0055085,GO:0008381,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460622.1;locus_tag=C9E96_RS01790;product=mechanosensitive ion channel family protein;protein_id=WP_000493665.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	45479	46081	.	-	.	ID=gene-C9E96_RS01795;Name=C9E96_RS01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01795;old_locus_tag=C9E96_01830
NZ_PYJX01000033.1	Protein Homology	CDS	45479	46081	.	-	0	ID=cds-WP_000163362.1;Parent=gene-C9E96_RS01795;Dbxref=GenBank:WP_000163362.1;Name=WP_000163362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460623.1;locus_tag=C9E96_RS01795;product=helix-turn-helix domain-containing protein;protein_id=WP_000163362.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	46125	46811	.	+	.	ID=gene-C9E96_RS01800;Name=C9E96_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01800;old_locus_tag=C9E96_01835
NZ_PYJX01000033.1	Protein Homology	CDS	46125	46811	.	+	0	ID=cds-WP_000097251.1;Parent=gene-C9E96_RS01800;Dbxref=GenBank:WP_000097251.1;Name=WP_000097251.1;Ontology_term=GO:0003723;gbkey=CDS;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460624.1;locus_tag=C9E96_RS01800;product=B3/B4 domain-containing protein;protein_id=WP_000097251.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	46839	47177	.	+	.	ID=gene-C9E96_RS01805;Name=C9E96_RS01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01805;old_locus_tag=C9E96_01840
NZ_PYJX01000033.1	Protein Homology	CDS	46839	47177	.	+	0	ID=cds-WP_000051812.1;Parent=gene-C9E96_RS01805;Dbxref=GenBank:WP_000051812.1;Name=WP_000051812.1;Ontology_term=GO:0017000,GO:0004497,GO:0016491;gbkey=CDS;go_function=monooxygenase activity|0004497||IEA,oxidoreductase activity|0016491||IEA;go_process=antibiotic biosynthetic process|0017000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000051808.1;locus_tag=C9E96_RS01805;product=antibiotic biosynthesis monooxygenase family protein;protein_id=WP_000051812.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	47283	47840	.	-	.	ID=gene-C9E96_RS01810;Name=C9E96_RS01810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01810;old_locus_tag=C9E96_01845
NZ_PYJX01000033.1	Protein Homology	CDS	47283	47840	.	-	0	ID=cds-WP_023993296.1;Parent=gene-C9E96_RS01810;Dbxref=GenBank:WP_023993296.1;Name=WP_023993296.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460625.1;locus_tag=C9E96_RS01810;product=redoxin family protein;protein_id=WP_023993296.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	47939	48769	.	-	.	ID=gene-C9E96_RS01815;Name=zirS;gbkey=Gene;gene=zirS;gene_biotype=protein_coding;locus_tag=C9E96_RS01815;old_locus_tag=C9E96_01850
NZ_PYJX01000033.1	Protein Homology	CDS	47939	48769	.	-	0	ID=cds-WP_001242934.1;Parent=gene-C9E96_RS01815;Dbxref=GenBank:WP_001242934.1;Name=WP_001242934.1;gbkey=CDS;gene=zirS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460626.1;locus_tag=C9E96_RS01815;product=two-partner-like secretion system exoprotein ZirS;protein_id=WP_001242934.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	48790	50772	.	-	.	ID=gene-C9E96_RS01820;Name=zirT;gbkey=Gene;gene=zirT;gene_biotype=protein_coding;locus_tag=C9E96_RS01820;old_locus_tag=C9E96_01855
NZ_PYJX01000033.1	Protein Homology	CDS	48790	50772	.	-	0	ID=cds-WP_000232023.1;Parent=gene-C9E96_RS01820;Dbxref=GenBank:WP_000232023.1;Name=WP_000232023.1;gbkey=CDS;gene=zirT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460627.1;locus_tag=C9E96_RS01820;product=two-partner secretion translocator ZirT;protein_id=WP_000232023.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	50847	51692	.	-	.	ID=gene-C9E96_RS01825;Name=zirU;gbkey=Gene;gene=zirU;gene_biotype=protein_coding;locus_tag=C9E96_RS01825;old_locus_tag=C9E96_01860
NZ_PYJX01000033.1	Protein Homology	CDS	50847	51692	.	-	0	ID=cds-WP_000273683.1;Parent=gene-C9E96_RS01825;Dbxref=GenBank:WP_000273683.1;Name=WP_000273683.1;gbkey=CDS;gene=zirU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460628.1;locus_tag=C9E96_RS01825;product=two-partner-like secretion system exoprotein ZirU;protein_id=WP_000273683.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	51986	52843	.	+	.	ID=gene-C9E96_RS01835;Name=C9E96_RS01835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01835;old_locus_tag=C9E96_01865
NZ_PYJX01000033.1	Protein Homology	CDS	51986	52843	.	+	0	ID=cds-WP_012543356.1;Parent=gene-C9E96_RS01835;Dbxref=GenBank:WP_012543356.1;Name=WP_012543356.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460629.1;locus_tag=C9E96_RS01835;product=GyrI-like domain-containing protein;protein_id=WP_012543356.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	53236	54345	.	+	.	ID=gene-C9E96_RS01840;Name=C9E96_RS01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01840;old_locus_tag=C9E96_01870
NZ_PYJX01000033.1	Protein Homology	CDS	53236	54345	.	+	0	ID=cds-WP_080203676.1;Parent=gene-C9E96_RS01840;Dbxref=GenBank:WP_080203676.1;Name=WP_080203676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448089.1;locus_tag=C9E96_RS01840;product=hypothetical protein;protein_id=WP_080203676.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	54559	54795	.	-	.	ID=gene-C9E96_RS01845;Name=C9E96_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01845;old_locus_tag=C9E96_01875
NZ_PYJX01000033.1	Protein Homology	CDS	54559	54795	.	-	0	ID=cds-WP_001168017.1;Parent=gene-C9E96_RS01845;Dbxref=GenBank:WP_001168017.1;Name=WP_001168017.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001168019.1;locus_tag=C9E96_RS01845;product=YgdI/YgdR family lipoprotein;protein_id=WP_001168017.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	54924	55514	.	-	.	ID=gene-C9E96_RS01850;Name=C9E96_RS01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01850;old_locus_tag=C9E96_01880
NZ_PYJX01000033.1	Protein Homology	CDS	54924	55514	.	-	0	ID=cds-WP_000208473.1;Parent=gene-C9E96_RS01850;Dbxref=GenBank:WP_000208473.1;Name=WP_000208473.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460632.1;locus_tag=C9E96_RS01850;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000208473.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	55592	56305	.	+	.	ID=gene-C9E96_RS01855;Name=bdcA;gbkey=Gene;gene=bdcA;gene_biotype=protein_coding;locus_tag=C9E96_RS01855;old_locus_tag=C9E96_01885
NZ_PYJX01000033.1	Protein Homology	CDS	55592	56305	.	+	0	ID=cds-WP_135369866.1;Parent=gene-C9E96_RS01855;Dbxref=GenBank:WP_135369866.1;Name=WP_135369866.1;Ontology_term=GO:0016491;gbkey=CDS;gene=bdcA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460633.1;locus_tag=C9E96_RS01855;product=SDR family oxidoreductase;protein_id=WP_135369866.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	56396	57265	.	-	.	ID=gene-C9E96_RS01860;Name=C9E96_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01860;old_locus_tag=C9E96_01890
NZ_PYJX01000033.1	Protein Homology	CDS	56396	57265	.	-	0	ID=cds-WP_000456771.1;Parent=gene-C9E96_RS01860;Dbxref=GenBank:WP_000456771.1;Name=WP_000456771.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460634.1;locus_tag=C9E96_RS01860;product=aldo/keto reductase;protein_id=WP_000456771.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	pseudogene	57544	58446	.	-	.	ID=gene-C9E96_RS01865;Name=C9E96_RS01865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01865;old_locus_tag=C9E96_01895;partial=true;pseudo=true;start_range=.,57544
NZ_PYJX01000033.1	Protein Homology	CDS	57544	58446	.	-	0	ID=cds-C9E96_RS01865;Parent=gene-C9E96_RS01865;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460635.1;locus_tag=C9E96_RS01865;partial=true;product=LysR family transcriptional regulator;pseudo=true;start_range=.,57544;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	58565	59494	.	+	.	ID=gene-C9E96_RS01870;Name=C9E96_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01870;old_locus_tag=C9E96_01900
NZ_PYJX01000033.1	Protein Homology	CDS	58565	59494	.	+	0	ID=cds-WP_023993301.1;Parent=gene-C9E96_RS01870;Dbxref=GenBank:WP_023993301.1;Name=WP_023993301.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460636.1;locus_tag=C9E96_RS01870;product=aromatic alcohol reductase;protein_id=WP_023993301.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	59591	61204	.	-	.	ID=gene-C9E96_RS01875;Name=C9E96_RS01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01875;old_locus_tag=C9E96_01905
NZ_PYJX01000033.1	Protein Homology	CDS	59591	61204	.	-	0	ID=cds-WP_001216563.1;Parent=gene-C9E96_RS01875;Dbxref=GenBank:WP_001216563.1;Name=WP_001216563.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460637.1;locus_tag=C9E96_RS01875;product=peptide ABC transporter substrate-binding protein;protein_id=WP_001216563.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	61394	62122	.	+	.	ID=gene-C9E96_RS01880;Name=mpaA;gbkey=Gene;gene=mpaA;gene_biotype=protein_coding;locus_tag=C9E96_RS01880;old_locus_tag=C9E96_01910
NZ_PYJX01000033.1	Protein Homology	CDS	61394	62122	.	+	0	ID=cds-WP_000219107.1;Parent=gene-C9E96_RS01880;Dbxref=GenBank:WP_000219107.1;Name=WP_000219107.1;Ontology_term=GO:0006508,GO:0004181,GO:0008270;gbkey=CDS;gene=mpaA;go_function=metallocarboxypeptidase activity|0004181||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460638.1;locus_tag=C9E96_RS01880;product=murein tripeptide amidase MpaA;protein_id=WP_000219107.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	62097	63062	.	-	.	ID=gene-C9E96_RS01885;Name=ycjG;gbkey=Gene;gene=ycjG;gene_biotype=protein_coding;locus_tag=C9E96_RS01885;old_locus_tag=C9E96_01915
NZ_PYJX01000033.1	Protein Homology	CDS	62097	63062	.	-	0	ID=cds-WP_001258073.1;Parent=gene-C9E96_RS01885;Dbxref=GenBank:WP_001258073.1;Name=WP_001258073.1;Ontology_term=GO:0009063,GO:0016855;gbkey=CDS;gene=ycjG;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460639.1;locus_tag=C9E96_RS01885;product=L-Ala-D/L-Glu epimerase;protein_id=WP_001258073.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	63178	63684	.	+	.	ID=gene-C9E96_RS01890;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=C9E96_RS01890;old_locus_tag=C9E96_01920
NZ_PYJX01000033.1	Protein Homology	CDS	63178	63684	.	+	0	ID=cds-WP_000084401.1;Parent=gene-C9E96_RS01890;Dbxref=GenBank:WP_000084401.1;Name=WP_000084401.1;Ontology_term=GO:0008379,GO:0016684;gbkey=CDS;gene=tpx;go_function=thioredoxin peroxidase activity|0008379||IEA,oxidoreductase activity%2C acting on peroxide as acceptor|0016684||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460640.1;locus_tag=C9E96_RS01890;product=thiol peroxidase;protein_id=WP_000084401.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	63773	65314	.	-	.	ID=gene-C9E96_RS01895;Name=tyrR;gbkey=Gene;gene=tyrR;gene_biotype=protein_coding;locus_tag=C9E96_RS01895;old_locus_tag=C9E96_01925
NZ_PYJX01000033.1	Protein Homology	CDS	63773	65314	.	-	0	ID=cds-WP_135493777.1;Parent=gene-C9E96_RS01895;Dbxref=GenBank:WP_135493777.1;Name=WP_135493777.1;Ontology_term=GO:0006355,GO:0008134;gbkey=CDS;gene=tyrR;go_function=transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460641.1;locus_tag=C9E96_RS01895;product=transcriptional regulator TyrR;protein_id=WP_135493777.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	65462	66523	.	-	.	ID=gene-C9E96_RS01900;Name=C9E96_RS01900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01900;old_locus_tag=C9E96_01930
NZ_PYJX01000033.1	Protein Homology	CDS	65462	66523	.	-	0	ID=cds-WP_023138304.1;Parent=gene-C9E96_RS01900;Dbxref=GenBank:WP_023138304.1;Name=WP_023138304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460642.1;locus_tag=C9E96_RS01900;product=YcjF family protein;protein_id=WP_023138304.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	66520	67917	.	-	.	ID=gene-C9E96_RS01905;Name=C9E96_RS01905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01905;old_locus_tag=C9E96_01935
NZ_PYJX01000033.1	Protein Homology	CDS	66520	67917	.	-	0	ID=cds-WP_167852878.1;Parent=gene-C9E96_RS01905;Dbxref=GenBank:WP_167852878.1;Name=WP_167852878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126510.1;locus_tag=C9E96_RS01905;product=YcjX family protein;protein_id=WP_167852878.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	68066	68380	.	-	.	ID=gene-C9E96_RS01910;Name=pspE;gbkey=Gene;gene=pspE;gene_biotype=protein_coding;locus_tag=C9E96_RS01910;old_locus_tag=C9E96_01940
NZ_PYJX01000033.1	Protein Homology	CDS	68066	68380	.	-	0	ID=cds-WP_000913428.1;Parent=gene-C9E96_RS01910;Dbxref=GenBank:WP_000913428.1;Name=WP_000913428.1;gbkey=CDS;gene=pspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460644.1;locus_tag=C9E96_RS01910;product=thiosulfate sulfurtransferase PspE;protein_id=WP_000913428.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	68456	68674	.	-	.	ID=gene-C9E96_RS01915;Name=pspD;gbkey=Gene;gene=pspD;gene_biotype=protein_coding;locus_tag=C9E96_RS01915;old_locus_tag=C9E96_01945
NZ_PYJX01000033.1	Protein Homology	CDS	68456	68674	.	-	0	ID=cds-WP_001097610.1;Parent=gene-C9E96_RS01915;Dbxref=GenBank:WP_001097610.1;Name=WP_001097610.1;gbkey=CDS;gene=pspD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460645.1;locus_tag=C9E96_RS01915;product=phage shock protein PspD;protein_id=WP_001097610.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	68697	69056	.	-	.	ID=gene-C9E96_RS01920;Name=pspC;gbkey=Gene;gene=pspC;gene_biotype=protein_coding;locus_tag=C9E96_RS01920;old_locus_tag=C9E96_01950
NZ_PYJX01000033.1	Protein Homology	CDS	68697	69056	.	-	0	ID=cds-WP_000508938.1;Parent=gene-C9E96_RS01920;Dbxref=GenBank:WP_000508938.1;Name=WP_000508938.1;gbkey=CDS;gene=pspC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460646.1;locus_tag=C9E96_RS01920;product=envelope stress response membrane protein PspC;protein_id=WP_000508938.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	69056	69280	.	-	.	ID=gene-C9E96_RS01925;Name=pspB;gbkey=Gene;gene=pspB;gene_biotype=protein_coding;locus_tag=C9E96_RS01925;old_locus_tag=C9E96_01955
NZ_PYJX01000033.1	Protein Homology	CDS	69056	69280	.	-	0	ID=cds-WP_001274953.1;Parent=gene-C9E96_RS01925;Dbxref=GenBank:WP_001274953.1;Name=WP_001274953.1;Ontology_term=GO:0009271;gbkey=CDS;gene=pspB;go_process=phage shock|0009271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460647.1;locus_tag=C9E96_RS01925;product=envelope stress response membrane protein PspB;protein_id=WP_001274953.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	69340	70008	.	-	.	ID=gene-C9E96_RS01930;Name=pspA;gbkey=Gene;gene=pspA;gene_biotype=protein_coding;locus_tag=C9E96_RS01930;old_locus_tag=C9E96_01960
NZ_PYJX01000033.1	Protein Homology	CDS	69340	70008	.	-	0	ID=cds-WP_135493781.1;Parent=gene-C9E96_RS01930;Dbxref=GenBank:WP_135493781.1;Name=WP_135493781.1;gbkey=CDS;gene=pspA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460648.1;locus_tag=C9E96_RS01930;product=phage shock protein PspA;protein_id=WP_135493781.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	70179	71159	.	+	.	ID=gene-C9E96_RS01935;Name=pspF;gbkey=Gene;gene=pspF;gene_biotype=protein_coding;locus_tag=C9E96_RS01935;old_locus_tag=C9E96_01965
NZ_PYJX01000033.1	Protein Homology	CDS	70179	71159	.	+	0	ID=cds-WP_135493783.1;Parent=gene-C9E96_RS01935;Dbxref=GenBank:WP_135493783.1;Name=WP_135493783.1;gbkey=CDS;gene=pspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460649.1;locus_tag=C9E96_RS01935;product=phage shock protein operon transcriptional activator;protein_id=WP_135493783.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	71271	72920	.	+	.	ID=gene-C9E96_RS01940;Name=sapA;gbkey=Gene;gene=sapA;gene_biotype=protein_coding;locus_tag=C9E96_RS01940;old_locus_tag=C9E96_01970
NZ_PYJX01000033.1	Protein Homology	CDS	71271	72920	.	+	0	ID=cds-WP_001241622.1;Parent=gene-C9E96_RS01940;Dbxref=GenBank:WP_001241622.1;Name=WP_001241622.1;gbkey=CDS;gene=sapA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460650.1;locus_tag=C9E96_RS01940;product=peptide ABC transporter substrate-binding protein SapA;protein_id=WP_001241622.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	72917	73882	.	+	.	ID=gene-C9E96_RS01945;Name=sapB;gbkey=Gene;gene=sapB;gene_biotype=protein_coding;locus_tag=C9E96_RS01945;old_locus_tag=C9E96_01975
NZ_PYJX01000033.1	Protein Homology	CDS	72917	73882	.	+	0	ID=cds-WP_000583298.1;Parent=gene-C9E96_RS01945;Dbxref=GenBank:WP_000583298.1;Name=WP_000583298.1;gbkey=CDS;gene=sapB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126482.1;locus_tag=C9E96_RS01945;product=peptide ABC transporter permease SapB;protein_id=WP_000583298.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	73869	74759	.	+	.	ID=gene-C9E96_RS01950;Name=sapC;gbkey=Gene;gene=sapC;gene_biotype=protein_coding;locus_tag=C9E96_RS01950;old_locus_tag=C9E96_01980
NZ_PYJX01000033.1	Protein Homology	CDS	73869	74759	.	+	0	ID=cds-WP_001146150.1;Parent=gene-C9E96_RS01950;Dbxref=GenBank:WP_001146150.1;Name=WP_001146150.1;gbkey=CDS;gene=sapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460652.1;locus_tag=C9E96_RS01950;product=peptide ABC transporter permease SapC;protein_id=WP_001146150.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	74759	75751	.	+	.	ID=gene-C9E96_RS01955;Name=sapD;gbkey=Gene;gene=sapD;gene_biotype=protein_coding;locus_tag=C9E96_RS01955;old_locus_tag=C9E96_01985
NZ_PYJX01000033.1	Protein Homology	CDS	74759	75751	.	+	0	ID=cds-WP_135493785.1;Parent=gene-C9E96_RS01955;Dbxref=GenBank:WP_135493785.1;Name=WP_135493785.1;gbkey=CDS;gene=sapD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460653.1;locus_tag=C9E96_RS01955;product=peptide ABC transporter ATP-binding protein SapD;protein_id=WP_135493785.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	75753	76559	.	+	.	ID=gene-C9E96_RS01960;Name=sapF;gbkey=Gene;gene=sapF;gene_biotype=protein_coding;locus_tag=C9E96_RS01960;old_locus_tag=C9E96_01990
NZ_PYJX01000033.1	Protein Homology	CDS	75753	76559	.	+	0	ID=cds-WP_000230462.1;Parent=gene-C9E96_RS01960;Dbxref=GenBank:WP_000230462.1;Name=WP_000230462.1;gbkey=CDS;gene=sapF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460654.1;locus_tag=C9E96_RS01960;product=peptide ABC transporter ATP-binding protein SapF;protein_id=WP_000230462.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	76575	77282	.	-	.	ID=gene-C9E96_RS01965;Name=C9E96_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01965;old_locus_tag=C9E96_01995
NZ_PYJX01000033.1	Protein Homology	CDS	76575	77282	.	-	0	ID=cds-WP_001268395.1;Parent=gene-C9E96_RS01965;Dbxref=GenBank:WP_001268395.1;Name=WP_001268395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748430.1;locus_tag=C9E96_RS01965;product=EAL domain-containing protein;protein_id=WP_001268395.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	77749	79122	.	-	.	ID=gene-C9E96_RS01970;Name=steC;gbkey=Gene;gene=steC;gene_biotype=protein_coding;locus_tag=C9E96_RS01970;old_locus_tag=C9E96_02000
NZ_PYJX01000033.1	Protein Homology	CDS	77749	79122	.	-	0	ID=cds-WP_001116912.1;Parent=gene-C9E96_RS01970;Dbxref=GenBank:WP_001116912.1;Name=WP_001116912.1;gbkey=CDS;gene=steC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460656.1;locus_tag=C9E96_RS01970;product=SPI-2 type III secretion system effector kinase SteC;protein_id=WP_001116912.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	79157	79336	.	+	.	ID=gene-C9E96_RS01975;Name=C9E96_RS01975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01975;old_locus_tag=C9E96_02005
NZ_PYJX01000033.1	Protein Homology	CDS	79157	79336	.	+	0	ID=cds-WP_001535215.1;Parent=gene-C9E96_RS01975;Dbxref=GenBank:WP_001535215.1;Name=WP_001535215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460657.1;locus_tag=C9E96_RS01975;product=hypothetical protein;protein_id=WP_001535215.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	79311	79610	.	+	.	ID=gene-C9E96_RS01980;Name=C9E96_RS01980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01980;old_locus_tag=C9E96_02010
NZ_PYJX01000033.1	Protein Homology	CDS	79311	79610	.	+	0	ID=cds-WP_010989025.1;Parent=gene-C9E96_RS01980;Dbxref=GenBank:WP_010989025.1;Name=WP_010989025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460658.1;locus_tag=C9E96_RS01980;product=hypothetical protein;protein_id=WP_010989025.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	79728	80516	.	+	.	ID=gene-C9E96_RS01985;Name=fabI;gbkey=Gene;gene=fabI;gene_biotype=protein_coding;locus_tag=C9E96_RS01985;old_locus_tag=C9E96_02015
NZ_PYJX01000033.1	Protein Homology	CDS	79728	80516	.	+	0	ID=cds-WP_000506501.1;Parent=gene-C9E96_RS01985;Dbxref=GenBank:WP_000506501.1;Name=WP_000506501.1;gbkey=CDS;gene=fabI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126472.1;locus_tag=C9E96_RS01985;product=enoyl-ACP reductase FabI;protein_id=WP_000506501.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	pseudogene	80716	81693	.	+	.	ID=gene-C9E96_RS01990;Name=C9E96_RS01990;end_range=81693,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01990;old_locus_tag=C9E96_02020;partial=true;pseudo=true
NZ_PYJX01000033.1	Protein Homology	CDS	80716	81693	.	+	0	ID=cds-C9E96_RS01990;Parent=gene-C9E96_RS01990;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=81693,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460660.1;locus_tag=C9E96_RS01990;partial=true;product=carboxymuconolactone decarboxylase family protein;pseudo=true;transl_table=11
NZ_PYJX01000033.1	RefSeq	pseudogene	81938	83872	.	+	.	ID=gene-C9E96_RS01995;Name=C9E96_RS01995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01995;old_locus_tag=C9E96_02025;pseudo=true
NZ_PYJX01000033.1	Protein Homology	CDS	81938	83872	.	+	0	ID=cds-C9E96_RS01995;Parent=gene-C9E96_RS01995;Note=internal stop;Ontology_term=GO:0006401,GO:0003723,GO:0008859;gbkey=CDS;go_function=RNA binding|0003723||IEA,exoribonuclease II activity|0008859||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460661.1;locus_tag=C9E96_RS01995;product=exoribonuclease II;pseudo=true;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	84134	86116	.	+	.	ID=gene-C9E96_RS02000;Name=pdeR;gbkey=Gene;gene=pdeR;gene_biotype=protein_coding;locus_tag=C9E96_RS02000;old_locus_tag=C9E96_02035
NZ_PYJX01000033.1	Protein Homology	CDS	84134	86116	.	+	0	ID=cds-WP_023993303.1;Parent=gene-C9E96_RS02000;Dbxref=GenBank:WP_023993303.1;Name=WP_023993303.1;gbkey=CDS;gene=pdeR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460662.1;locus_tag=C9E96_RS02000;product=cyclic di-GMP phosphodiesterase;protein_id=WP_023993303.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	86238	86417	.	+	.	ID=gene-C9E96_RS02005;Name=C9E96_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02005;old_locus_tag=C9E96_02040
NZ_PYJX01000033.1	Protein Homology	CDS	86238	86417	.	+	0	ID=cds-WP_001279854.1;Parent=gene-C9E96_RS02005;Dbxref=GenBank:WP_001279854.1;Name=WP_001279854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001279854.1;locus_tag=C9E96_RS02005;product=YciZ family protein;protein_id=WP_001279854.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	86504	87256	.	+	.	ID=gene-C9E96_RS02010;Name=C9E96_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02010;old_locus_tag=C9E96_02045
NZ_PYJX01000033.1	Protein Homology	CDS	86504	87256	.	+	0	ID=cds-WP_001088594.1;Parent=gene-C9E96_RS02010;Dbxref=GenBank:WP_001088594.1;Name=WP_001088594.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460663.1;locus_tag=C9E96_RS02010;product=DNA-binding transcriptional regulator YciT;protein_id=WP_001088594.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	87515	87733	.	+	.	ID=gene-C9E96_RS02015;Name=osmB;gbkey=Gene;gene=osmB;gene_biotype=protein_coding;locus_tag=C9E96_RS02015;old_locus_tag=C9E96_02050
NZ_PYJX01000033.1	Protein Homology	CDS	87515	87733	.	+	0	ID=cds-WP_000481166.1;Parent=gene-C9E96_RS02015;Dbxref=GenBank:WP_000481166.1;Name=WP_000481166.1;gbkey=CDS;gene=osmB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460664.1;locus_tag=C9E96_RS02015;product=osmotically-inducible lipoprotein OsmB;protein_id=WP_000481166.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	87853	88179	.	-	.	ID=gene-C9E96_RS02020;Name=yciH;gbkey=Gene;gene=yciH;gene_biotype=protein_coding;locus_tag=C9E96_RS02020;old_locus_tag=C9E96_02055
NZ_PYJX01000033.1	Protein Homology	CDS	87853	88179	.	-	0	ID=cds-WP_001285199.1;Parent=gene-C9E96_RS02020;Dbxref=GenBank:WP_001285199.1;Name=WP_001285199.1;gbkey=CDS;gene=yciH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460665.1;locus_tag=C9E96_RS02020;product=stress response translation initiation inhibitor YciH;protein_id=WP_001285199.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	88179	88916	.	-	.	ID=gene-C9E96_RS02025;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=C9E96_RS02025;old_locus_tag=C9E96_02060
NZ_PYJX01000033.1	Protein Homology	CDS	88179	88916	.	-	0	ID=cds-WP_001529407.1;Parent=gene-C9E96_RS02025;Dbxref=GenBank:WP_001529407.1;Name=WP_001529407.1;Ontology_term=GO:0006207,GO:0044205,GO:0004590;gbkey=CDS;gene=pyrF;go_function=orotidine-5'-phosphate decarboxylase activity|0004590||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,'de novo' UMP biosynthetic process|0044205||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460666.1;locus_tag=C9E96_RS02025;product=orotidine-5'-phosphate decarboxylase;protein_id=WP_001529407.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	89107	90276	.	-	.	ID=gene-C9E96_RS02030;Name=lapB;gbkey=Gene;gene=lapB;gene_biotype=protein_coding;locus_tag=C9E96_RS02030;old_locus_tag=C9E96_02065
NZ_PYJX01000033.1	Protein Homology	CDS	89107	90276	.	-	0	ID=cds-WP_000891378.1;Parent=gene-C9E96_RS02030;Dbxref=GenBank:WP_000891378.1;Name=WP_000891378.1;Ontology_term=GO:0008653,GO:0005515;gbkey=CDS;gene=lapB;go_function=protein binding|0005515||IEA;go_process=lipopolysaccharide metabolic process|0008653||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000891373.1;locus_tag=C9E96_RS02030;product=lipopolysaccharide assembly protein LapB;protein_id=WP_000891378.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	90283	90591	.	-	.	ID=gene-C9E96_RS02035;Name=C9E96_RS02035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02035;old_locus_tag=C9E96_02070
NZ_PYJX01000033.1	Protein Homology	CDS	90283	90591	.	-	0	ID=cds-WP_000876301.1;Parent=gene-C9E96_RS02035;Dbxref=GenBank:WP_000876301.1;Name=WP_000876301.1;Ontology_term=GO:0008653,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=lipopolysaccharide metabolic process|0008653||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460668.1;locus_tag=C9E96_RS02035;product=LapA family protein;protein_id=WP_000876301.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	90741	91505	.	-	.	ID=gene-C9E96_RS02040;Name=pgpB;gbkey=Gene;gene=pgpB;gene_biotype=protein_coding;locus_tag=C9E96_RS02040;old_locus_tag=C9E96_02080
NZ_PYJX01000033.1	Protein Homology	CDS	90741	91505	.	-	0	ID=cds-WP_000948651.1;Parent=gene-C9E96_RS02040;Dbxref=GenBank:WP_000948651.1;Name=WP_000948651.1;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=pgpB;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460669.1;locus_tag=C9E96_RS02040;product=phosphatidylglycerophosphatase B;protein_id=WP_000948651.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	91701	92291	.	+	.	ID=gene-C9E96_RS02045;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=C9E96_RS02045;old_locus_tag=C9E96_02085
NZ_PYJX01000033.1	Protein Homology	CDS	91701	92291	.	+	0	ID=cds-WP_001176284.1;Parent=gene-C9E96_RS02045;Dbxref=GenBank:WP_001176284.1;Name=WP_001176284.1;Ontology_term=GO:0003935;gbkey=CDS;gene=ribA;go_function=GTP cyclohydrolase II activity|0003935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460670.1;locus_tag=C9E96_RS02045;product=GTP cyclohydrolase II;protein_id=WP_001176284.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	92347	95022	.	-	.	ID=gene-C9E96_RS02050;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=C9E96_RS02050;old_locus_tag=C9E96_02090
NZ_PYJX01000033.1	Protein Homology	CDS	92347	95022	.	-	0	ID=cds-WP_080203675.1;Parent=gene-C9E96_RS02050;Dbxref=GenBank:WP_080203675.1;Name=WP_080203675.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnA;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460671.1;locus_tag=C9E96_RS02050;product=aconitate hydratase AcnA;protein_id=WP_080203675.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	95205	95297	.	-	.	ID=gene-C9E96_RS24135;Name=ymiC;gbkey=Gene;gene=ymiC;gene_biotype=protein_coding;locus_tag=C9E96_RS24135
NZ_PYJX01000033.1	Protein Homology	CDS	95205	95297	.	-	0	ID=cds-WP_223148964.1;Parent=gene-C9E96_RS24135;Dbxref=GenBank:WP_223148964.1;Name=WP_223148964.1;gbkey=CDS;gene=ymiC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_226998799.1;locus_tag=C9E96_RS24135;product=small membrane protein YmiC;protein_id=WP_223148964.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	95407	95577	.	-	.	ID=gene-C9E96_RS02055;Name=C9E96_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02055;old_locus_tag=C9E96_02095
NZ_PYJX01000033.1	Protein Homology	CDS	95407	95577	.	-	0	ID=cds-WP_000029027.1;Parent=gene-C9E96_RS02055;Dbxref=GenBank:WP_000029027.1;Name=WP_000029027.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000029022.1;locus_tag=C9E96_RS02055;product=hypothetical protein;protein_id=WP_000029027.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	95578	95718	.	-	.	ID=gene-C9E96_RS02060;Name=C9E96_RS02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02060;old_locus_tag=C9E96_02100
NZ_PYJX01000033.1	Protein Homology	CDS	95578	95718	.	-	0	ID=cds-WP_213083417.1;Parent=gene-C9E96_RS02060;Dbxref=GenBank:WP_213083417.1;Name=WP_213083417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588449.3;locus_tag=C9E96_RS02060;product=YmiA family putative membrane protein;protein_id=WP_213083417.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	95999	96973	.	-	.	ID=gene-C9E96_RS02065;Name=cysB;gbkey=Gene;gene=cysB;gene_biotype=protein_coding;locus_tag=C9E96_RS02065;old_locus_tag=C9E96_02105
NZ_PYJX01000033.1	Protein Homology	CDS	95999	96973	.	-	0	ID=cds-WP_135493787.1;Parent=gene-C9E96_RS02065;Dbxref=GenBank:WP_135493787.1;Name=WP_135493787.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=cysB;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012017585.1;locus_tag=C9E96_RS02065;product=HTH-type transcriptional regulator CysB;protein_id=WP_135493787.1;transl_table=11
NZ_PYJX01000033.1	RefSeq	gene	97384	97840	.	-	.	ID=gene-C9E96_RS02070;Name=C9E96_RS02070;end_range=97840,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02070;old_locus_tag=C9E96_02110;partial=true
NZ_PYJX01000033.1	Protein Homology	CDS	97384	97840	.	-	1	ID=cds-WP_135493789.1;Parent=gene-C9E96_RS02070;Dbxref=GenBank:WP_135493789.1;Name=WP_135493789.1;Ontology_term=GO:0006265,GO:0003677,GO:0003916,GO:0005694;end_range=97840,.;gbkey=CDS;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460673.1;locus_tag=C9E96_RS02070;partial=true;product=topoisomerase DNA-binding C4 zinc finger domain-containing protein;protein_id=WP_135493789.1;transl_table=11
##sequence-region NZ_PYJX01000040.1 1 26902
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000040.1	RefSeq	region	1	26902	.	+	.	ID=NZ_PYJX01000040.1:1..26902;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000040.1	RefSeq	gene	393	1097	.	+	.	ID=gene-C9E96_RS02825;Name=C9E96_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02825;old_locus_tag=C9E96_02870
NZ_PYJX01000040.1	Protein Homology	CDS	393	1097	.	+	0	ID=cds-WP_001131144.1;Parent=gene-C9E96_RS02825;Dbxref=GenBank:WP_001131144.1;Name=WP_001131144.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462787.1;locus_tag=C9E96_RS02825;product=FadR/GntR family transcriptional regulator;protein_id=WP_001131144.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	1109	2536	.	+	.	ID=gene-C9E96_RS02830;Name=mdtD;gbkey=Gene;gene=mdtD;gene_biotype=protein_coding;locus_tag=C9E96_RS02830;old_locus_tag=C9E96_02875
NZ_PYJX01000040.1	Protein Homology	CDS	1109	2536	.	+	0	ID=cds-WP_000202072.1;Parent=gene-C9E96_RS02830;Dbxref=GenBank:WP_000202072.1;Name=WP_000202072.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mdtD;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462786.1;locus_tag=C9E96_RS02830;product=multidrug transporter subunit MdtD;protein_id=WP_000202072.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	2502	3500	.	-	.	ID=gene-C9E96_RS02835;Name=rbsR;gbkey=Gene;gene=rbsR;gene_biotype=protein_coding;locus_tag=C9E96_RS02835;old_locus_tag=C9E96_02880
NZ_PYJX01000040.1	Protein Homology	CDS	2502	3500	.	-	0	ID=cds-WP_135493825.1;Parent=gene-C9E96_RS02835;Dbxref=GenBank:WP_135493825.1;Name=WP_135493825.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rbsR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462785.1;locus_tag=C9E96_RS02835;product=ribose operon transcriptional repressor RbsR;protein_id=WP_135493825.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	3504	4433	.	-	.	ID=gene-C9E96_RS02840;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=protein_coding;locus_tag=C9E96_RS02840;old_locus_tag=C9E96_02885
NZ_PYJX01000040.1	Protein Homology	CDS	3504	4433	.	-	0	ID=cds-WP_023993765.1;Parent=gene-C9E96_RS02840;Dbxref=GenBank:WP_023993765.1;Name=WP_023993765.1;Ontology_term=GO:0006014,GO:0004747;gbkey=CDS;gene=rbsK;go_function=ribokinase activity|0004747||IEA;go_process=D-ribose metabolic process|0006014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462784.1;locus_tag=C9E96_RS02840;product=ribokinase;protein_id=WP_023993765.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	4566	5456	.	-	.	ID=gene-C9E96_RS02845;Name=rbsB;gbkey=Gene;gene=rbsB;gene_biotype=protein_coding;locus_tag=C9E96_RS02845;old_locus_tag=C9E96_02890
NZ_PYJX01000040.1	Protein Homology	CDS	4566	5456	.	-	0	ID=cds-WP_001056260.1;Parent=gene-C9E96_RS02845;Dbxref=GenBank:WP_001056260.1;Name=WP_001056260.1;gbkey=CDS;gene=rbsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462783.1;locus_tag=C9E96_RS02845;product=ribose ABC transporter substrate-binding protein RbsB;protein_id=WP_001056260.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	5481	6446	.	-	.	ID=gene-C9E96_RS02850;Name=rbsC;gbkey=Gene;gene=rbsC;gene_biotype=protein_coding;locus_tag=C9E96_RS02850;old_locus_tag=C9E96_02895
NZ_PYJX01000040.1	Protein Homology	CDS	5481	6446	.	-	0	ID=cds-WP_000211345.1;Parent=gene-C9E96_RS02850;Dbxref=GenBank:WP_000211345.1;Name=WP_000211345.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=rbsC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002882531.1;locus_tag=C9E96_RS02850;product=ribose ABC transporter permease;protein_id=WP_000211345.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	6452	7957	.	-	.	ID=gene-C9E96_RS02855;Name=rbsA;gbkey=Gene;gene=rbsA;gene_biotype=protein_coding;locus_tag=C9E96_RS02855;old_locus_tag=C9E96_02900
NZ_PYJX01000040.1	Protein Homology	CDS	6452	7957	.	-	0	ID=cds-WP_023993766.1;Parent=gene-C9E96_RS02855;Dbxref=GenBank:WP_023993766.1;Name=WP_023993766.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rbsA;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462781.1;locus_tag=C9E96_RS02855;product=ribose ABC transporter ATP-binding protein RbsA;protein_id=WP_023993766.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	7965	8384	.	-	.	ID=gene-C9E96_RS02860;Name=rbsD;gbkey=Gene;gene=rbsD;gene_biotype=protein_coding;locus_tag=C9E96_RS02860;old_locus_tag=C9E96_02905
NZ_PYJX01000040.1	Protein Homology	CDS	7965	8384	.	-	0	ID=cds-WP_000715945.1;Parent=gene-C9E96_RS02860;Dbxref=GenBank:WP_000715945.1;Name=WP_000715945.1;Ontology_term=GO:0016872;gbkey=CDS;gene=rbsD;go_function=intramolecular lyase activity|0016872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462780.1;locus_tag=C9E96_RS02860;product=D-ribose pyranase;protein_id=WP_000715945.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	8602	10470	.	-	.	ID=gene-C9E96_RS02865;Name=kup;gbkey=Gene;gene=kup;gene_biotype=protein_coding;locus_tag=C9E96_RS02865;old_locus_tag=C9E96_02910
NZ_PYJX01000040.1	Protein Homology	CDS	8602	10470	.	-	0	ID=cds-WP_000102338.1;Parent=gene-C9E96_RS02865;Dbxref=GenBank:WP_000102338.1;Name=WP_000102338.1;Ontology_term=GO:0015079,GO:0016020;gbkey=CDS;gene=kup;go_component=membrane|0016020||IEA;go_function=potassium ion transmembrane transporter activity|0015079||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000102304.1;locus_tag=C9E96_RS02865;product=low affinity potassium transporter Kup;protein_id=WP_000102338.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	10818	12314	.	+	.	ID=gene-C9E96_RS02870;Name=ravA;gbkey=Gene;gene=ravA;gene_biotype=protein_coding;locus_tag=C9E96_RS02870;old_locus_tag=C9E96_02915
NZ_PYJX01000040.1	Protein Homology	CDS	10818	12314	.	+	0	ID=cds-WP_000940991.1;Parent=gene-C9E96_RS02870;Dbxref=GenBank:WP_000940991.1;Name=WP_000940991.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=ravA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462778.1;locus_tag=C9E96_RS02870;product=ATPase RavA;protein_id=WP_000940991.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	12308	13759	.	+	.	ID=gene-C9E96_RS02875;Name=viaA;gbkey=Gene;gene=viaA;gene_biotype=protein_coding;locus_tag=C9E96_RS02875;old_locus_tag=C9E96_02920
NZ_PYJX01000040.1	Protein Homology	CDS	12308	13759	.	+	0	ID=cds-WP_080203980.1;Parent=gene-C9E96_RS02875;Dbxref=GenBank:WP_080203980.1;Name=WP_080203980.1;gbkey=CDS;gene=viaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312714.1;locus_tag=C9E96_RS02875;product=ATPase RavA stimulator ViaA;protein_id=WP_080203980.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	13764	14756	.	-	.	ID=gene-C9E96_RS02880;Name=asnA;gbkey=Gene;gene=asnA;gene_biotype=protein_coding;locus_tag=C9E96_RS02880;old_locus_tag=C9E96_02925
NZ_PYJX01000040.1	Protein Homology	CDS	13764	14756	.	-	0	ID=cds-WP_000845123.1;Parent=gene-C9E96_RS02880;Dbxref=GenBank:WP_000845123.1;Name=WP_000845123.1;Ontology_term=GO:0006529,GO:0004071,GO:0005737;gbkey=CDS;gene=asnA;go_component=cytoplasm|0005737||IEA;go_function=aspartate-ammonia ligase activity|0004071||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462776.1;locus_tag=C9E96_RS02880;product=aspartate--ammonia ligase;protein_id=WP_000845123.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	14907	15365	.	+	.	ID=gene-C9E96_RS02885;Name=asnC;gbkey=Gene;gene=asnC;gene_biotype=protein_coding;locus_tag=C9E96_RS02885;old_locus_tag=C9E96_02930
NZ_PYJX01000040.1	Protein Homology	CDS	14907	15365	.	+	0	ID=cds-WP_000433018.1;Parent=gene-C9E96_RS02885;Dbxref=GenBank:WP_000433018.1;Name=WP_000433018.1;Ontology_term=GO:0043565;gbkey=CDS;gene=asnC;go_function=sequence-specific DNA binding|0043565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462775.1;locus_tag=C9E96_RS02885;product=transcriptional regulator AsnC;protein_id=WP_000433018.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	15455	15898	.	+	.	ID=gene-C9E96_RS02890;Name=mioC;gbkey=Gene;gene=mioC;gene_biotype=protein_coding;locus_tag=C9E96_RS02890;old_locus_tag=C9E96_02935
NZ_PYJX01000040.1	Protein Homology	CDS	15455	15898	.	+	0	ID=cds-WP_000763722.1;Parent=gene-C9E96_RS02890;Dbxref=GenBank:WP_000763722.1;Name=WP_000763722.1;Ontology_term=GO:0010181;gbkey=CDS;gene=mioC;go_function=FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462774.1;locus_tag=C9E96_RS02890;product=FMN-binding protein MioC;protein_id=WP_000763722.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	16277	18166	.	+	.	ID=gene-C9E96_RS02900;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=C9E96_RS02900;old_locus_tag=C9E96_02945
NZ_PYJX01000040.1	Protein Homology	CDS	16277	18166	.	+	0	ID=cds-WP_000499872.1;Parent=gene-C9E96_RS02900;Dbxref=GenBank:WP_000499872.1;Name=WP_000499872.1;Ontology_term=GO:0002098,GO:0008033;gbkey=CDS;gene=mnmG;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000499793.1;locus_tag=C9E96_RS02900;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=WP_000499872.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	18269	18892	.	+	.	ID=gene-C9E96_RS02905;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=protein_coding;locus_tag=C9E96_RS02905;old_locus_tag=C9E96_02950
NZ_PYJX01000040.1	Protein Homology	CDS	18269	18892	.	+	0	ID=cds-WP_001519938.1;Parent=gene-C9E96_RS02905;Dbxref=GenBank:WP_001519938.1;Name=WP_001519938.1;Ontology_term=GO:0031167,GO:0046118,GO:0008168;gbkey=CDS;gene=rsmG;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462772.3;locus_tag=C9E96_RS02905;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;protein_id=WP_001519938.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	19508	19888	.	+	.	ID=gene-C9E96_RS02910;Name=atpI;gbkey=Gene;gene=atpI;gene_biotype=protein_coding;locus_tag=C9E96_RS02910;old_locus_tag=C9E96_02955
NZ_PYJX01000040.1	Protein Homology	CDS	19508	19888	.	+	0	ID=cds-WP_000116685.1;Parent=gene-C9E96_RS02910;Dbxref=GenBank:WP_000116685.1;Name=WP_000116685.1;gbkey=CDS;gene=atpI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462771.1;locus_tag=C9E96_RS02910;product=F0F1 ATP synthase subunit I;protein_id=WP_000116685.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	19897	20712	.	+	.	ID=gene-C9E96_RS02915;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=C9E96_RS02915;old_locus_tag=C9E96_02960
NZ_PYJX01000040.1	Protein Homology	CDS	19897	20712	.	+	0	ID=cds-WP_000135632.1;Parent=gene-C9E96_RS02915;Dbxref=GenBank:WP_000135632.1;Name=WP_000135632.1;Ontology_term=GO:0015986,GO:0015078,GO:0045259;gbkey=CDS;gene=atpB;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121454.1;locus_tag=C9E96_RS02915;product=F0F1 ATP synthase subunit A;protein_id=WP_000135632.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	20759	20998	.	+	.	ID=gene-C9E96_RS02920;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=C9E96_RS02920;old_locus_tag=C9E96_02965
NZ_PYJX01000040.1	Protein Homology	CDS	20759	20998	.	+	0	ID=cds-WP_000429386.1;Parent=gene-C9E96_RS02920;Dbxref=GenBank:WP_000429386.1;Name=WP_000429386.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpE;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004246596.1;locus_tag=C9E96_RS02920;product=F0F1 ATP synthase subunit C;protein_id=WP_000429386.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	21058	21528	.	+	.	ID=gene-C9E96_RS02925;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;locus_tag=C9E96_RS02925;old_locus_tag=C9E96_02970
NZ_PYJX01000040.1	Protein Homology	CDS	21058	21528	.	+	0	ID=cds-WP_001052212.1;Parent=gene-C9E96_RS02925;Dbxref=GenBank:WP_001052212.1;Name=WP_001052212.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpF;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001052215.1;locus_tag=C9E96_RS02925;product=F0F1 ATP synthase subunit B;protein_id=WP_001052212.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	21543	22076	.	+	.	ID=gene-C9E96_RS02930;Name=atpH;gbkey=Gene;gene=atpH;gene_biotype=protein_coding;locus_tag=C9E96_RS02930;old_locus_tag=C9E96_02975
NZ_PYJX01000040.1	Protein Homology	CDS	21543	22076	.	+	0	ID=cds-WP_001288957.1;Parent=gene-C9E96_RS02930;Dbxref=GenBank:WP_001288957.1;Name=WP_001288957.1;Ontology_term=GO:0015986,GO:0046933,GO:0016020;gbkey=CDS;gene=atpH;go_component=membrane|0016020||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966593.1;locus_tag=C9E96_RS02930;product=F0F1 ATP synthase subunit delta;protein_id=WP_001288957.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	22089	23630	.	+	.	ID=gene-C9E96_RS02935;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=C9E96_RS02935;old_locus_tag=C9E96_02980
NZ_PYJX01000040.1	Protein Homology	CDS	22089	23630	.	+	0	ID=cds-WP_001176751.1;Parent=gene-C9E96_RS02935;Dbxref=GenBank:WP_001176751.1;Name=WP_001176751.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpA;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001176751.1;locus_tag=C9E96_RS02935;product=F0F1 ATP synthase subunit alpha;protein_id=WP_001176751.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	23681	24544	.	+	.	ID=gene-C9E96_RS02940;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=C9E96_RS02940;old_locus_tag=C9E96_02985
NZ_PYJX01000040.1	Protein Homology	CDS	23681	24544	.	+	0	ID=cds-WP_000896506.1;Parent=gene-C9E96_RS02940;Dbxref=GenBank:WP_000896506.1;Name=WP_000896506.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpG;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882764.1;locus_tag=C9E96_RS02940;product=F0F1 ATP synthase subunit gamma;protein_id=WP_000896506.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	24571	25953	.	+	.	ID=gene-C9E96_RS02945;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=C9E96_RS02945;old_locus_tag=C9E96_02990
NZ_PYJX01000040.1	Protein Homology	CDS	24571	25953	.	+	0	ID=cds-WP_000190499.1;Parent=gene-C9E96_RS02945;Dbxref=GenBank:WP_000190499.1;Name=WP_000190499.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpD;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017800291.1;locus_tag=C9E96_RS02945;product=F0F1 ATP synthase subunit beta;protein_id=WP_000190499.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	gene	25974	26393	.	+	.	ID=gene-C9E96_RS02950;Name=C9E96_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02950;old_locus_tag=C9E96_02995
NZ_PYJX01000040.1	Protein Homology	CDS	25974	26393	.	+	0	ID=cds-WP_001251971.1;Parent=gene-C9E96_RS02950;Dbxref=GenBank:WP_001251971.1;Name=WP_001251971.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001251972.1;locus_tag=C9E96_RS02950;product=F0F1 ATP synthase subunit epsilon;protein_id=WP_001251971.1;transl_table=11
NZ_PYJX01000040.1	RefSeq	pseudogene	26619	26902	.	+	.	ID=gene-C9E96_RS02955;Name=C9E96_RS02955;end_range=26902,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS02955;old_locus_tag=C9E96_03000;partial=true;pseudo=true
NZ_PYJX01000040.1	Protein Homology	CDS	26619	26902	.	+	0	ID=cds-C9E96_RS02955;Parent=gene-C9E96_RS02955;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=26902,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462762.1;locus_tag=C9E96_RS02955;partial=true;product=permease;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000067.1 1 26540
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000067.1	RefSeq	region	1	26540	.	+	.	ID=NZ_PYJX01000067.1:1..26540;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000067.1	RefSeq	gene	1	619	.	-	.	ID=gene-C9E96_RS05360;Name=C9E96_RS05360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05360;old_locus_tag=C9E96_05485;partial=true;start_range=.,1
NZ_PYJX01000067.1	Protein Homology	CDS	1	619	.	-	0	ID=cds-WP_210114519.1;Parent=gene-C9E96_RS05360;Dbxref=GenBank:WP_210114519.1;Name=WP_210114519.1;Ontology_term=GO:0016831;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462863.1;locus_tag=C9E96_RS05360;partial=true;product=UbiD family decarboxylase domain-containing protein;protein_id=WP_210114519.1;start_range=.,1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	805	1293	.	+	.	ID=gene-C9E96_RS05365;Name=rfaH;gbkey=Gene;gene=rfaH;gene_biotype=protein_coding;locus_tag=C9E96_RS05365;old_locus_tag=C9E96_05490
NZ_PYJX01000067.1	Protein Homology	CDS	805	1293	.	+	0	ID=cds-WP_001192410.1;Parent=gene-C9E96_RS05365;Dbxref=GenBank:WP_001192410.1;Name=WP_001192410.1;Ontology_term=GO:0006355;gbkey=CDS;gene=rfaH;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462862.1;locus_tag=C9E96_RS05365;product=transcription/translation regulatory transformer protein RfaH;protein_id=WP_001192410.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	1301	2083	.	-	.	ID=gene-C9E96_RS05370;Name=tatD;gbkey=Gene;gene=tatD;gene_biotype=protein_coding;locus_tag=C9E96_RS05370;old_locus_tag=C9E96_05495
NZ_PYJX01000067.1	Protein Homology	CDS	1301	2083	.	-	0	ID=cds-WP_000459643.1;Parent=gene-C9E96_RS05370;Dbxref=GenBank:WP_000459643.1;Name=WP_000459643.1;Ontology_term=GO:0008408;gbkey=CDS;gene=tatD;go_function=3'-5' exonuclease activity|0008408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462861.3;locus_tag=C9E96_RS05370;product=3'-5' ssDNA/RNA exonuclease TatD;protein_id=WP_000459643.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	2125	2904	.	-	.	ID=gene-C9E96_RS05375;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=C9E96_RS05375;old_locus_tag=C9E96_05500
NZ_PYJX01000067.1	Protein Homology	CDS	2125	2904	.	-	0	ID=cds-WP_000257554.1;Parent=gene-C9E96_RS05375;Dbxref=GenBank:WP_000257554.1;Name=WP_000257554.1;gbkey=CDS;gene=tatC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462860.1;locus_tag=C9E96_RS05375;product=Sec-independent protein translocase subunit TatC;protein_id=WP_000257554.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	2907	3455	.	-	.	ID=gene-C9E96_RS05380;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=C9E96_RS05380;old_locus_tag=C9E96_05505
NZ_PYJX01000067.1	Protein Homology	CDS	2907	3455	.	-	0	ID=cds-WP_135493929.1;Parent=gene-C9E96_RS05380;Dbxref=GenBank:WP_135493929.1;Name=WP_135493929.1;Ontology_term=GO:0015628,GO:0008320,GO:0016020;gbkey=CDS;gene=tatB;go_component=membrane|0016020||IEA;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462859.1;locus_tag=C9E96_RS05380;product=Sec-independent protein translocase protein TatB;protein_id=WP_135493929.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	3459	3713	.	-	.	ID=gene-C9E96_RS05385;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=C9E96_RS05385;old_locus_tag=C9E96_05510
NZ_PYJX01000067.1	Protein Homology	CDS	3459	3713	.	-	0	ID=cds-WP_000508972.1;Parent=gene-C9E96_RS05385;Dbxref=GenBank:WP_000508972.1;Name=WP_000508972.1;gbkey=CDS;gene=tatA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462858.1;locus_tag=C9E96_RS05385;product=Sec-independent protein translocase subunit TatA;protein_id=WP_000508972.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	3919	5559	.	-	.	ID=gene-C9E96_RS05390;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=C9E96_RS05390;old_locus_tag=C9E96_05515
NZ_PYJX01000067.1	Protein Homology	CDS	3919	5559	.	-	0	ID=cds-WP_080204085.1;Parent=gene-C9E96_RS05390;Dbxref=GenBank:WP_080204085.1;Name=WP_080204085.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiB;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462857.1;locus_tag=C9E96_RS05390;product=ubiquinone biosynthesis regulatory protein kinase UbiB;protein_id=WP_080204085.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	5556	6161	.	-	.	ID=gene-C9E96_RS05395;Name=ubiJ;gbkey=Gene;gene=ubiJ;gene_biotype=protein_coding;locus_tag=C9E96_RS05395;old_locus_tag=C9E96_05520
NZ_PYJX01000067.1	Protein Homology	CDS	5556	6161	.	-	0	ID=cds-WP_023993648.1;Parent=gene-C9E96_RS05395;Dbxref=GenBank:WP_023993648.1;Name=WP_023993648.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiJ;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462856.1;locus_tag=C9E96_RS05395;product=ubiquinone biosynthesis protein UbiJ;protein_id=WP_023993648.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	6171	6926	.	-	.	ID=gene-C9E96_RS05400;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=C9E96_RS05400;old_locus_tag=C9E96_05525
NZ_PYJX01000067.1	Protein Homology	CDS	6171	6926	.	-	0	ID=cds-WP_000229009.1;Parent=gene-C9E96_RS05400;Dbxref=GenBank:WP_000229009.1;Name=WP_000229009.1;Ontology_term=GO:0008168;gbkey=CDS;gene=ubiE;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462855.1;locus_tag=C9E96_RS05400;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase UbiE;protein_id=WP_000229009.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	7022	8452	.	-	.	ID=gene-C9E96_RS05405;Name=rmuC;gbkey=Gene;gene=rmuC;gene_biotype=protein_coding;locus_tag=C9E96_RS05405;old_locus_tag=C9E96_05530
NZ_PYJX01000067.1	Protein Homology	CDS	7022	8452	.	-	0	ID=cds-WP_000355562.1;Parent=gene-C9E96_RS05405;Dbxref=GenBank:WP_000355562.1;Name=WP_000355562.1;gbkey=CDS;gene=rmuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462854.1;locus_tag=C9E96_RS05405;product=DNA recombination protein RmuC;protein_id=WP_000355562.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	8592	9353	.	-	.	ID=gene-C9E96_RS05410;Name=udp;gbkey=Gene;gene=udp;gene_biotype=protein_coding;locus_tag=C9E96_RS05410;old_locus_tag=C9E96_05535
NZ_PYJX01000067.1	Protein Homology	CDS	8592	9353	.	-	0	ID=cds-WP_000045169.1;Parent=gene-C9E96_RS05410;Dbxref=GenBank:WP_000045169.1;Name=WP_000045169.1;Ontology_term=GO:0009116,GO:0016763;gbkey=CDS;gene=udp;go_function=pentosyltransferase activity|0016763||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462853.1;locus_tag=C9E96_RS05410;product=uridine phosphorylase;protein_id=WP_000045169.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	9612	10424	.	+	.	ID=gene-C9E96_RS05415;Name=C9E96_RS05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05415;old_locus_tag=C9E96_05540
NZ_PYJX01000067.1	Protein Homology	CDS	9612	10424	.	+	0	ID=cds-WP_000213959.1;Parent=gene-C9E96_RS05415;Dbxref=GenBank:WP_000213959.1;Name=WP_000213959.1;Ontology_term=GO:0016787,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462852.1;locus_tag=C9E96_RS05415;product=dienelactone hydrolase family protein;protein_id=WP_000213959.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	10504	11847	.	-	.	ID=gene-C9E96_RS05420;Name=C9E96_RS05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05420;old_locus_tag=C9E96_05545
NZ_PYJX01000067.1	Protein Homology	CDS	10504	11847	.	-	0	ID=cds-WP_000017949.1;Parent=gene-C9E96_RS05420;Dbxref=GenBank:WP_000017949.1;Name=WP_000017949.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462851.1;locus_tag=C9E96_RS05420;product=anaerobic sulfatase maturase;protein_id=WP_000017949.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	12191	14455	.	-	.	ID=gene-C9E96_RS05425;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;locus_tag=C9E96_RS05425;old_locus_tag=C9E96_05550
NZ_PYJX01000067.1	Protein Homology	CDS	12191	14455	.	-	0	ID=cds-WP_000154179.1;Parent=gene-C9E96_RS05425;Dbxref=GenBank:WP_000154179.1;Name=WP_000154179.1;Ontology_term=GO:0008652,GO:0009086,GO:0003871,GO:0008270;gbkey=CDS;gene=metE;go_function=5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|0003871||IEA,zinc ion binding|0008270||IEA;go_process=amino acid biosynthetic process|0008652||IEA,methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462850.1;locus_tag=C9E96_RS05425;product=5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase;protein_id=WP_000154179.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	14691	15644	.	+	.	ID=gene-C9E96_RS05430;Name=metR;gbkey=Gene;gene=metR;gene_biotype=protein_coding;locus_tag=C9E96_RS05430;old_locus_tag=C9E96_05555
NZ_PYJX01000067.1	Protein Homology	CDS	14691	15644	.	+	0	ID=cds-WP_000569786.1;Parent=gene-C9E96_RS05430;Dbxref=GenBank:WP_000569786.1;Name=WP_000569786.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=metR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462849.1;locus_tag=C9E96_RS05430;product=HTH-type transcriptional regulator MetR;protein_id=WP_000569786.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	15532	16431	.	-	.	ID=gene-C9E96_RS05435;Name=C9E96_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05435;old_locus_tag=C9E96_05560
NZ_PYJX01000067.1	Protein Homology	CDS	15532	16431	.	-	0	ID=cds-WP_001196254.1;Parent=gene-C9E96_RS05435;Dbxref=GenBank:WP_001196254.1;Name=WP_001196254.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462848.1;locus_tag=C9E96_RS05435;product=carboxylate/amino acid/amine transporter;protein_id=WP_001196254.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	16512	17312	.	-	.	ID=gene-C9E96_RS05440;Name=yigL;gbkey=Gene;gene=yigL;gene_biotype=protein_coding;locus_tag=C9E96_RS05440;old_locus_tag=C9E96_05565
NZ_PYJX01000067.1	Protein Homology	CDS	16512	17312	.	-	0	ID=cds-WP_000285338.1;Parent=gene-C9E96_RS05440;Dbxref=GenBank:WP_000285338.1;Name=WP_000285338.1;gbkey=CDS;gene=yigL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462847.1;locus_tag=C9E96_RS05440;product=sugar/pyridoxal phosphate phosphatase YigL;protein_id=WP_000285338.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	17328	18344	.	-	.	ID=gene-C9E96_RS05445;Name=pldB;gbkey=Gene;gene=pldB;gene_biotype=protein_coding;locus_tag=C9E96_RS05445;old_locus_tag=C9E96_05570
NZ_PYJX01000067.1	Protein Homology	CDS	17328	18344	.	-	0	ID=cds-WP_135493933.1;Parent=gene-C9E96_RS05445;Dbxref=GenBank:WP_135493933.1;Name=WP_135493933.1;gbkey=CDS;gene=pldB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462846.1;locus_tag=C9E96_RS05445;product=lysophospholipase L2;protein_id=WP_135493933.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	18455	19075	.	+	.	ID=gene-C9E96_RS05450;Name=rhtB;gbkey=Gene;gene=rhtB;gene_biotype=protein_coding;locus_tag=C9E96_RS05450;old_locus_tag=C9E96_05575
NZ_PYJX01000067.1	Protein Homology	CDS	18455	19075	.	+	0	ID=cds-WP_000142524.1;Parent=gene-C9E96_RS05450;Dbxref=GenBank:WP_000142524.1;Name=WP_000142524.1;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;gene=rhtB;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462845.1;locus_tag=C9E96_RS05450;product=homoserine/homoserine lactone efflux protein;protein_id=WP_000142524.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	19115	19735	.	-	.	ID=gene-C9E96_RS05455;Name=rhtC;gbkey=Gene;gene=rhtC;gene_biotype=protein_coding;locus_tag=C9E96_RS05455;old_locus_tag=C9E96_05580
NZ_PYJX01000067.1	Protein Homology	CDS	19115	19735	.	-	0	ID=cds-WP_000928814.1;Parent=gene-C9E96_RS05455;Dbxref=GenBank:WP_000928814.1;Name=WP_000928814.1;Ontology_term=GO:0006865;gbkey=CDS;gene=rhtC;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462844.1;locus_tag=C9E96_RS05455;product=threonine export protein RhtC;protein_id=WP_000928814.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	19799	21628	.	-	.	ID=gene-C9E96_RS05460;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=C9E96_RS05460;old_locus_tag=C9E96_05585
NZ_PYJX01000067.1	Protein Homology	CDS	19799	21628	.	-	0	ID=cds-WP_001533487.1;Parent=gene-C9E96_RS05460;Dbxref=GenBank:WP_001533487.1;Name=WP_001533487.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=recQ;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026263.3;locus_tag=C9E96_RS05460;product=ATP-dependent DNA helicase RecQ;protein_id=WP_001533487.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	pseudogene	21712	22581	.	-	.	ID=gene-C9E96_RS05465;Name=pldA;gbkey=Gene;gene=pldA;gene_biotype=pseudogene;locus_tag=C9E96_RS05465;old_locus_tag=C9E96_05590;pseudo=true
NZ_PYJX01000067.1	Protein Homology	CDS	21712	22581	.	-	0	ID=cds-C9E96_RS05465;Parent=gene-C9E96_RS05465;Note=internal stop;Ontology_term=GO:0006629,GO:0004620;gbkey=CDS;gene=pldA;go_function=phospholipase activity|0004620||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462842.1;locus_tag=C9E96_RS05465;product=phospholipase A;pseudo=true;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	22746	23213	.	+	.	ID=gene-C9E96_RS05470;Name=yigI;gbkey=Gene;gene=yigI;gene_biotype=protein_coding;locus_tag=C9E96_RS05470;old_locus_tag=C9E96_05595
NZ_PYJX01000067.1	Protein Homology	CDS	22746	23213	.	+	0	ID=cds-WP_001277136.1;Parent=gene-C9E96_RS05470;Dbxref=GenBank:WP_001277136.1;Name=WP_001277136.1;gbkey=CDS;gene=yigI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312777.2;locus_tag=C9E96_RS05470;product=acyl-CoA thioesterase YigI;protein_id=WP_001277136.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	23257	24144	.	+	.	ID=gene-C9E96_RS05475;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=C9E96_RS05475;old_locus_tag=C9E96_05600
NZ_PYJX01000067.1	Protein Homology	CDS	23257	24144	.	+	0	ID=cds-WP_135493931.1;Parent=gene-C9E96_RS05475;Dbxref=GenBank:WP_135493931.1;Name=WP_135493931.1;Ontology_term=GO:0016020;gbkey=CDS;gene=rarD;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000339076.1;locus_tag=C9E96_RS05475;product=EamA family transporter RarD;protein_id=WP_135493931.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	24184	24480	.	-	.	ID=gene-C9E96_RS05480;Name=C9E96_RS05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05480;old_locus_tag=C9E96_05605
NZ_PYJX01000067.1	Protein Homology	CDS	24184	24480	.	-	0	ID=cds-WP_001170054.1;Parent=gene-C9E96_RS05480;Dbxref=GenBank:WP_001170054.1;Name=WP_001170054.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001170054.1;locus_tag=C9E96_RS05480;product=hypothetical protein;protein_id=WP_001170054.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	24655	25035	.	+	.	ID=gene-C9E96_RS05485;Name=C9E96_RS05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05485;old_locus_tag=C9E96_05610
NZ_PYJX01000067.1	Protein Homology	CDS	24655	25035	.	+	0	ID=cds-WP_080204084.1;Parent=gene-C9E96_RS05485;Dbxref=GenBank:WP_080204084.1;Name=WP_080204084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001727015.1;locus_tag=C9E96_RS05485;product=hypothetical protein;protein_id=WP_080204084.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	25083	26033	.	-	.	ID=gene-C9E96_RS05490;Name=corA;gbkey=Gene;gene=corA;gene_biotype=protein_coding;locus_tag=C9E96_RS05490;old_locus_tag=C9E96_05615
NZ_PYJX01000067.1	Protein Homology	CDS	25083	26033	.	-	0	ID=cds-WP_135369811.1;Parent=gene-C9E96_RS05490;Dbxref=GenBank:WP_135369811.1;Name=WP_135369811.1;Ontology_term=GO:0006824,GO:0015693,GO:0015087,GO:0015095,GO:0016020;gbkey=CDS;gene=corA;go_component=membrane|0016020||IEA;go_function=cobalt ion transmembrane transporter activity|0015087||IEA,magnesium ion transmembrane transporter activity|0015095||IEA;go_process=cobalt ion transport|0006824||IEA,magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000947142.1;locus_tag=C9E96_RS05490;product=magnesium/cobalt transporter CorA;protein_id=WP_135369811.1;transl_table=11
NZ_PYJX01000067.1	RefSeq	gene	26189	26245	.	-	.	ID=gene-C9E96_RS24160;Name=ysgD;gbkey=Gene;gene=ysgD;gene_biotype=protein_coding;locus_tag=C9E96_RS24160
NZ_PYJX01000067.1	Protein Homology	CDS	26189	26245	.	-	0	ID=cds-WP_212723238.1;Parent=gene-C9E96_RS24160;Dbxref=GenBank:WP_212723238.1;Name=WP_212723238.1;gbkey=CDS;gene=ysgD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051213.1;locus_tag=C9E96_RS24160;product=YsgD/CorL family protein;protein_id=WP_212723238.1;transl_table=11
##sequence-region NZ_PYJX01000198.1 1 26507
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000198.1	RefSeq	region	1	26507	.	+	.	ID=NZ_PYJX01000198.1:1..26507;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000198.1	RefSeq	pseudogene	1	386	.	+	.	ID=gene-C9E96_RS19710;Name=C9E96_RS19710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS19710;old_locus_tag=C9E96_20225;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000198.1	Protein Homology	CDS	1	386	.	+	2	ID=cds-C9E96_RS19710;Parent=gene-C9E96_RS19710;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462889.1;locus_tag=C9E96_RS19710;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	441	1175	.	-	.	ID=gene-C9E96_RS19715;Name=C9E96_RS19715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19715;old_locus_tag=C9E96_20230
NZ_PYJX01000198.1	Protein Homology	CDS	441	1175	.	-	0	ID=cds-WP_001270585.1;Parent=gene-C9E96_RS19715;Dbxref=GenBank:WP_001270585.1;Name=WP_001270585.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462890.1;locus_tag=C9E96_RS19715;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_001270585.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	1160	2038	.	-	.	ID=gene-C9E96_RS19720;Name=C9E96_RS19720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19720;old_locus_tag=C9E96_20235
NZ_PYJX01000198.1	Protein Homology	CDS	1160	2038	.	-	0	ID=cds-WP_001520166.1;Parent=gene-C9E96_RS19720;Dbxref=GenBank:WP_001520166.1;Name=WP_001520166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462891.1;locus_tag=C9E96_RS19720;product=STM4011 family radical SAM protein;protein_id=WP_001520166.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	2035	3276	.	-	.	ID=gene-C9E96_RS19725;Name=C9E96_RS19725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19725;old_locus_tag=C9E96_20240
NZ_PYJX01000198.1	Protein Homology	CDS	2035	3276	.	-	0	ID=cds-WP_001062063.1;Parent=gene-C9E96_RS19725;Dbxref=GenBank:WP_001062063.1;Name=WP_001062063.1;Ontology_term=GO:0051536;gbkey=CDS;go_function=iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462892.1;locus_tag=C9E96_RS19725;product=STM4012 family radical SAM protein;protein_id=WP_001062063.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	3278	4153	.	-	.	ID=gene-C9E96_RS19730;Name=C9E96_RS19730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19730;old_locus_tag=C9E96_20245
NZ_PYJX01000198.1	Protein Homology	CDS	3278	4153	.	-	0	ID=cds-WP_023993697.1;Parent=gene-C9E96_RS19730;Dbxref=GenBank:WP_023993697.1;Name=WP_023993697.1;Ontology_term=GO:0008484;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462893.3;locus_tag=C9E96_RS19730;product=STM4013/SEN3800 family hydrolase;protein_id=WP_023993697.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	4146	5171	.	-	.	ID=gene-C9E96_RS19735;Name=C9E96_RS19735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19735;old_locus_tag=C9E96_20250
NZ_PYJX01000198.1	Protein Homology	CDS	4146	5171	.	-	0	ID=cds-WP_000337354.1;Parent=gene-C9E96_RS19735;Dbxref=GenBank:WP_000337354.1;Name=WP_000337354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462894.3;locus_tag=C9E96_RS19735;product=STM4014 family protein;protein_id=WP_000337354.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	5184	6032	.	-	.	ID=gene-C9E96_RS19740;Name=C9E96_RS19740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19740;old_locus_tag=C9E96_20255
NZ_PYJX01000198.1	Protein Homology	CDS	5184	6032	.	-	0	ID=cds-WP_023993696.1;Parent=gene-C9E96_RS19740;Dbxref=GenBank:WP_023993696.1;Name=WP_023993696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462895.1;locus_tag=C9E96_RS19740;product=STM4015 family protein;protein_id=WP_023993696.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	6189	6881	.	-	.	ID=gene-C9E96_RS19745;Name=ompL;gbkey=Gene;gene=ompL;gene_biotype=protein_coding;locus_tag=C9E96_RS19745;old_locus_tag=C9E96_20260
NZ_PYJX01000198.1	Protein Homology	CDS	6189	6881	.	-	0	ID=cds-WP_000838828.1;Parent=gene-C9E96_RS19745;Dbxref=GenBank:WP_000838828.1;Name=WP_000838828.1;gbkey=CDS;gene=ompL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462896.1;locus_tag=C9E96_RS19745;product=porin OmpL;protein_id=WP_000838828.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	6949	8370	.	-	.	ID=gene-C9E96_RS19750;Name=C9E96_RS19750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19750;old_locus_tag=C9E96_20265
NZ_PYJX01000198.1	Protein Homology	CDS	6949	8370	.	-	0	ID=cds-WP_000064891.1;Parent=gene-C9E96_RS19750;Dbxref=GenBank:WP_000064891.1;Name=WP_000064891.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462897.1;locus_tag=C9E96_RS19750;product=MFS transporter;protein_id=WP_000064891.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	8416	9798	.	-	.	ID=gene-C9E96_RS19755;Name=C9E96_RS19755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19755;old_locus_tag=C9E96_20270
NZ_PYJX01000198.1	Protein Homology	CDS	8416	9798	.	-	0	ID=cds-WP_000084250.1;Parent=gene-C9E96_RS19755;Dbxref=GenBank:WP_000084250.1;Name=WP_000084250.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462898.1;locus_tag=C9E96_RS19755;product=MFS transporter;protein_id=WP_000084250.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	9844	11880	.	-	.	ID=gene-C9E96_RS19760;Name=C9E96_RS19760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19760;old_locus_tag=C9E96_20275
NZ_PYJX01000198.1	Protein Homology	CDS	9844	11880	.	-	0	ID=cds-WP_023993695.1;Parent=gene-C9E96_RS19760;Dbxref=GenBank:WP_023993695.1;Name=WP_023993695.1;Ontology_term=GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462899.1;locus_tag=C9E96_RS19760;product=alpha-glucosidase;protein_id=WP_023993695.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	11924	12781	.	-	.	ID=gene-C9E96_RS19765;Name=C9E96_RS19765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19765;old_locus_tag=C9E96_20280
NZ_PYJX01000198.1	Protein Homology	CDS	11924	12781	.	-	0	ID=cds-WP_023993694.1;Parent=gene-C9E96_RS19765;Dbxref=GenBank:WP_023993694.1;Name=WP_023993694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462900.3;locus_tag=C9E96_RS19765;product=aldose-1-epimerase;protein_id=WP_023993694.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	12785	14026	.	-	.	ID=gene-C9E96_RS19770;Name=yihS;gbkey=Gene;gene=yihS;gene_biotype=protein_coding;locus_tag=C9E96_RS19770;old_locus_tag=C9E96_20285
NZ_PYJX01000198.1	Protein Homology	CDS	12785	14026	.	-	0	ID=cds-WP_000870942.1;Parent=gene-C9E96_RS19770;Dbxref=GenBank:WP_000870942.1;Name=WP_000870942.1;gbkey=CDS;gene=yihS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462901.1;locus_tag=C9E96_RS19770;product=sulfoquinovose isomerase;protein_id=WP_000870942.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	14042	14920	.	-	.	ID=gene-C9E96_RS19775;Name=yihT;gbkey=Gene;gene=yihT;gene_biotype=protein_coding;locus_tag=C9E96_RS19775;old_locus_tag=C9E96_20290
NZ_PYJX01000198.1	Protein Homology	CDS	14042	14920	.	-	0	ID=cds-WP_001067413.1;Parent=gene-C9E96_RS19775;Dbxref=GenBank:WP_001067413.1;Name=WP_001067413.1;gbkey=CDS;gene=yihT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462902.1;locus_tag=C9E96_RS19775;product=sulfofructosephosphate aldolase;protein_id=WP_001067413.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	14943	15839	.	-	.	ID=gene-C9E96_RS19780;Name=yihU;gbkey=Gene;gene=yihU;gene_biotype=protein_coding;locus_tag=C9E96_RS19780;old_locus_tag=C9E96_20295
NZ_PYJX01000198.1	Protein Homology	CDS	14943	15839	.	-	0	ID=cds-WP_000268248.1;Parent=gene-C9E96_RS19780;Dbxref=GenBank:WP_000268248.1;Name=WP_000268248.1;Ontology_term=GO:0016491;gbkey=CDS;gene=yihU;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462903.1;locus_tag=C9E96_RS19780;product=sulfolactaldehyde 3-reductase;protein_id=WP_000268248.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	16005	16901	.	+	.	ID=gene-C9E96_RS19785;Name=C9E96_RS19785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19785;old_locus_tag=C9E96_20300
NZ_PYJX01000198.1	Protein Homology	CDS	16005	16901	.	+	0	ID=cds-WP_001520529.1;Parent=gene-C9E96_RS19785;Dbxref=GenBank:WP_001520529.1;Name=WP_001520529.1;Ontology_term=GO:0005975,GO:0005524,GO:0016301;gbkey=CDS;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462904.3;locus_tag=C9E96_RS19785;product=sugar kinase;protein_id=WP_001520529.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	16935	17738	.	+	.	ID=gene-C9E96_RS19790;Name=C9E96_RS19790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19790;old_locus_tag=C9E96_20305
NZ_PYJX01000198.1	Protein Homology	CDS	16935	17738	.	+	0	ID=cds-WP_000059693.1;Parent=gene-C9E96_RS19790;Dbxref=GenBank:WP_000059693.1;Name=WP_000059693.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462905.1;locus_tag=C9E96_RS19790;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000059693.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	17929	18528	.	+	.	ID=gene-C9E96_RS19795;Name=yihX;gbkey=Gene;gene=yihX;gene_biotype=protein_coding;locus_tag=C9E96_RS19795;old_locus_tag=C9E96_20310
NZ_PYJX01000198.1	Protein Homology	CDS	17929	18528	.	+	0	ID=cds-WP_000965698.1;Parent=gene-C9E96_RS19795;Dbxref=GenBank:WP_000965698.1;Name=WP_000965698.1;gbkey=CDS;gene=yihX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462906.1;locus_tag=C9E96_RS19795;product=glucose-1-phosphatase;protein_id=WP_000965698.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	18522	19394	.	+	.	ID=gene-C9E96_RS19800;Name=C9E96_RS19800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19800;old_locus_tag=C9E96_20315
NZ_PYJX01000198.1	Protein Homology	CDS	18522	19394	.	+	0	ID=cds-WP_079943200.1;Parent=gene-C9E96_RS19800;Dbxref=GenBank:WP_079943200.1;Name=WP_079943200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462907.1;locus_tag=C9E96_RS19800;product=virulence factor BrkB family protein;protein_id=WP_079943200.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	19391	19828	.	+	.	ID=gene-C9E96_RS19805;Name=dtd;gbkey=Gene;gene=dtd;gene_biotype=protein_coding;locus_tag=C9E96_RS19805;old_locus_tag=C9E96_20320
NZ_PYJX01000198.1	Protein Homology	CDS	19391	19828	.	+	0	ID=cds-WP_000560969.1;Parent=gene-C9E96_RS19805;Dbxref=GenBank:WP_000560969.1;Name=WP_000560969.1;Ontology_term=GO:0008152,GO:0004045;gbkey=CDS;gene=dtd;go_function=peptidyl-tRNA hydrolase activity|0004045||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000560980.1;locus_tag=C9E96_RS19805;product=D-aminoacyl-tRNA deacylase;protein_id=WP_000560969.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	19873	20814	.	+	.	ID=gene-C9E96_RS19810;Name=fabY;gbkey=Gene;gene=fabY;gene_biotype=protein_coding;gene_synonym=yiiD;locus_tag=C9E96_RS19810;old_locus_tag=C9E96_20325
NZ_PYJX01000198.1	Protein Homology	CDS	19873	20814	.	+	0	ID=cds-WP_001518251.1;Parent=gene-C9E96_RS19810;Dbxref=GenBank:WP_001518251.1;Name=WP_001518251.1;gbkey=CDS;gene=fabY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001666856.1;locus_tag=C9E96_RS19810;product=fatty acid biosynthesis protein FabY;protein_id=WP_001518251.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	20829	21275	.	-	.	ID=gene-C9E96_RS19815;Name=C9E96_RS19815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19815;old_locus_tag=C9E96_20330
NZ_PYJX01000198.1	Protein Homology	CDS	20829	21275	.	-	0	ID=cds-WP_001259009.1;Parent=gene-C9E96_RS19815;Dbxref=GenBank:WP_001259009.1;Name=WP_001259009.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462910.3;locus_tag=C9E96_RS19815;product=helix-turn-helix domain-containing protein;protein_id=WP_001259009.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	21272	21583	.	-	.	ID=gene-C9E96_RS19820;Name=C9E96_RS19820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19820;old_locus_tag=C9E96_20335
NZ_PYJX01000198.1	Protein Homology	CDS	21272	21583	.	-	0	ID=cds-WP_000558166.1;Parent=gene-C9E96_RS19820;Dbxref=GenBank:WP_000558166.1;Name=WP_000558166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462911.1;locus_tag=C9E96_RS19820;product=type II toxin-antitoxin system HigB family toxin;protein_id=WP_000558166.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	21669	22598	.	-	.	ID=gene-C9E96_RS19825;Name=C9E96_RS19825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19825;old_locus_tag=C9E96_20340
NZ_PYJX01000198.1	Protein Homology	CDS	21669	22598	.	-	0	ID=cds-WP_001127708.1;Parent=gene-C9E96_RS19825;Dbxref=GenBank:WP_001127708.1;Name=WP_001127708.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462912.1;locus_tag=C9E96_RS19825;product=alpha/beta hydrolase;protein_id=WP_001127708.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	22816	23127	.	+	.	ID=gene-C9E96_RS19830;Name=C9E96_RS19830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19830;old_locus_tag=C9E96_20345
NZ_PYJX01000198.1	Protein Homology	CDS	22816	23127	.	+	0	ID=cds-WP_001159637.1;Parent=gene-C9E96_RS19830;Dbxref=GenBank:WP_001159637.1;Name=WP_001159637.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001159636.1;locus_tag=C9E96_RS19830;product=hypothetical protein;protein_id=WP_001159637.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	23128	23418	.	+	.	ID=gene-C9E96_RS19835;Name=C9E96_RS19835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19835;old_locus_tag=C9E96_20350
NZ_PYJX01000198.1	Protein Homology	CDS	23128	23418	.	+	0	ID=cds-WP_000362050.1;Parent=gene-C9E96_RS19835;Dbxref=GenBank:WP_000362050.1;Name=WP_000362050.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011264433.1;locus_tag=C9E96_RS19835;product=helix-turn-helix domain-containing protein;protein_id=WP_000362050.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	23465	24394	.	-	.	ID=gene-C9E96_RS19840;Name=fdhE;gbkey=Gene;gene=fdhE;gene_biotype=protein_coding;locus_tag=C9E96_RS19840;old_locus_tag=C9E96_20355
NZ_PYJX01000198.1	Protein Homology	CDS	23465	24394	.	-	0	ID=cds-WP_000027730.1;Parent=gene-C9E96_RS19840;Dbxref=GenBank:WP_000027730.1;Name=WP_000027730.1;gbkey=CDS;gene=fdhE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121819.1;locus_tag=C9E96_RS19840;product=formate dehydrogenase accessory protein FdhE;protein_id=WP_000027730.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	24391	25026	.	-	.	ID=gene-C9E96_RS19845;Name=fdoI;gbkey=Gene;gene=fdoI;gene_biotype=protein_coding;locus_tag=C9E96_RS19845;old_locus_tag=C9E96_20360
NZ_PYJX01000198.1	Protein Homology	CDS	24391	25026	.	-	0	ID=cds-WP_000829025.1;Parent=gene-C9E96_RS19845;Dbxref=GenBank:WP_000829025.1;Name=WP_000829025.1;gbkey=CDS;gene=fdoI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462915.1;locus_tag=C9E96_RS19845;product=formate dehydrogenase cytochrome b556 subunit;protein_id=WP_000829025.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	25023	25925	.	-	.	ID=gene-C9E96_RS19850;Name=fdxH;gbkey=Gene;gene=fdxH;gene_biotype=protein_coding;locus_tag=C9E96_RS19850;old_locus_tag=C9E96_20365
NZ_PYJX01000198.1	Protein Homology	CDS	25023	25925	.	-	0	ID=cds-WP_000331364.1;Parent=gene-C9E96_RS19850;Dbxref=GenBank:WP_000331364.1;Name=WP_000331364.1;Ontology_term=GO:0015944,GO:0008863,GO:0051539,GO:0016020;gbkey=CDS;gene=fdxH;go_component=membrane|0016020||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=formate oxidation|0015944||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462916.1;locus_tag=C9E96_RS19850;product=formate dehydrogenase subunit beta;protein_id=WP_000331364.1;transl_table=11
NZ_PYJX01000198.1	RefSeq	gene	25938	26507	.	-	.	ID=gene-C9E96_RS19855;Name=C9E96_RS19855;end_range=26507,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19855;old_locus_tag=C9E96_20370;partial=true
NZ_PYJX01000198.1	Protein Homology	CDS	25938	26507	.	-	0	ID=cds-WP_245306435.1;Parent=gene-C9E96_RS19855;Dbxref=GenBank:WP_245306435.1;Name=WP_245306435.1;Ontology_term=GO:0016491,GO:0043546;end_range=26507,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460529.1;locus_tag=C9E96_RS19855;partial=true;product=molybdopterin dinucleotide binding domain-containing protein;protein_id=WP_245306435.1;transl_table=11
##sequence-region NZ_PYJX01000192.1 1 26285
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000192.1	RefSeq	region	1	26285	.	+	.	ID=NZ_PYJX01000192.1:1..26285;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000192.1	RefSeq	gene	1	654	.	+	.	ID=gene-C9E96_RS19350;Name=phnU;gbkey=Gene;gene=phnU;gene_biotype=protein_coding;locus_tag=C9E96_RS19350;old_locus_tag=C9E96_19860;partial=true;start_range=.,1
NZ_PYJX01000192.1	Protein Homology	CDS	1	654	.	+	0	ID=cds-WP_135494504.1;Parent=gene-C9E96_RS19350;Dbxref=GenBank:WP_135494504.1;Name=WP_135494504.1;Ontology_term=GO:0033223,GO:0033225,GO:0016020;gbkey=CDS;gene=phnU;go_component=membrane|0016020||IEA;go_function=ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459422.1;locus_tag=C9E96_RS19350;partial=true;product=2-aminoethylphosphonate ABC transporter permease subunit;protein_id=WP_135494504.1;start_range=.,1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	657	1454	.	+	.	ID=gene-C9E96_RS19355;Name=phnV;gbkey=Gene;gene=phnV;gene_biotype=protein_coding;locus_tag=C9E96_RS19355;old_locus_tag=C9E96_19865
NZ_PYJX01000192.1	Protein Homology	CDS	657	1454	.	+	0	ID=cds-WP_000909803.1;Parent=gene-C9E96_RS19355;Dbxref=GenBank:WP_000909803.1;Name=WP_000909803.1;Ontology_term=GO:0033223,GO:0033225,GO:0016020;gbkey=CDS;gene=phnV;go_component=membrane|0016020||IEA;go_function=ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459421.1;locus_tag=C9E96_RS19355;product=2-aminoethylphosphonate ABC transport system%2C membrane component PhnV;protein_id=WP_000909803.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	1498	2946	.	-	.	ID=gene-C9E96_RS19360;Name=thiI;gbkey=Gene;gene=thiI;gene_biotype=protein_coding;locus_tag=C9E96_RS19360;old_locus_tag=C9E96_19870
NZ_PYJX01000192.1	Protein Homology	CDS	1498	2946	.	-	0	ID=cds-WP_000668652.1;Parent=gene-C9E96_RS19360;Dbxref=GenBank:WP_000668652.1;Name=WP_000668652.1;Ontology_term=GO:0006400,GO:0009228,GO:0140741;gbkey=CDS;gene=thiI;go_function=tRNA-uracil-4 sulfurtransferase activity|0140741||IEA;go_process=tRNA modification|0006400||IEA,thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014168857.1;locus_tag=C9E96_RS19360;product=tRNA uracil 4-sulfurtransferase ThiI;protein_id=WP_000668652.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	3156	3398	.	+	.	ID=gene-C9E96_RS19365;Name=xseB;gbkey=Gene;gene=xseB;gene_biotype=protein_coding;locus_tag=C9E96_RS19365;old_locus_tag=C9E96_19875
NZ_PYJX01000192.1	Protein Homology	CDS	3156	3398	.	+	0	ID=cds-WP_001124944.1;Parent=gene-C9E96_RS19365;Dbxref=GenBank:WP_001124944.1;Name=WP_001124944.1;gbkey=CDS;gene=xseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459419.1;locus_tag=C9E96_RS19365;product=exodeoxyribonuclease VII small subunit;protein_id=WP_001124944.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	3399	4298	.	+	.	ID=gene-C9E96_RS19370;Name=ispA;gbkey=Gene;gene=ispA;gene_biotype=protein_coding;locus_tag=C9E96_RS19370;old_locus_tag=C9E96_19880
NZ_PYJX01000192.1	Protein Homology	CDS	3399	4298	.	+	0	ID=cds-WP_000348074.1;Parent=gene-C9E96_RS19370;Dbxref=GenBank:WP_000348074.1;Name=WP_000348074.1;Ontology_term=GO:0008299;gbkey=CDS;gene=ispA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459418.1;locus_tag=C9E96_RS19370;product=(2E%2C6E)-farnesyl diphosphate synthase;protein_id=WP_000348074.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	4322	6184	.	+	.	ID=gene-C9E96_RS19375;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=C9E96_RS19375;old_locus_tag=C9E96_19885
NZ_PYJX01000192.1	Protein Homology	CDS	4322	6184	.	+	0	ID=cds-WP_000006777.1;Parent=gene-C9E96_RS19375;Dbxref=GenBank:WP_000006777.1;Name=WP_000006777.1;Ontology_term=GO:0008615,GO:0009228,GO:0009240,GO:0008661,GO:0005737;gbkey=CDS;gene=dxs;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate synthase activity|0008661||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA,thiamine biosynthetic process|0009228||IEA,isopentenyl diphosphate biosynthetic process|0009240||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459417.1;locus_tag=C9E96_RS19375;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_000006777.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	6241	7230	.	+	.	ID=gene-C9E96_RS19380;Name=C9E96_RS19380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19380;old_locus_tag=C9E96_19890
NZ_PYJX01000192.1	Protein Homology	CDS	6241	7230	.	+	0	ID=cds-WP_023994049.1;Parent=gene-C9E96_RS19380;Dbxref=GenBank:WP_023994049.1;Name=WP_023994049.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459416.1;locus_tag=C9E96_RS19380;product=aldo/keto reductase;protein_id=WP_023994049.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	pseudogene	7238	7329	.	+	.	ID=gene-C9E96_RS24575;Name=C9E96_RS24575;end_range=7329,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24575;partial=true;pseudo=true;start_range=.,7238
NZ_PYJX01000192.1	Protein Homology	CDS	7238	7329	.	+	0	ID=cds-C9E96_RS24575;Parent=gene-C9E96_RS24575;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=7329,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=C9E96_RS24575;partial=true;product=hypothetical protein;pseudo=true;start_range=.,7238;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	7334	7849	.	-	.	ID=gene-C9E96_RS19385;Name=pgpA;gbkey=Gene;gene=pgpA;gene_biotype=protein_coding;locus_tag=C9E96_RS19385;old_locus_tag=C9E96_19895
NZ_PYJX01000192.1	Protein Homology	CDS	7334	7849	.	-	0	ID=cds-WP_000154063.1;Parent=gene-C9E96_RS19385;Dbxref=GenBank:WP_000154063.1;Name=WP_000154063.1;Ontology_term=GO:0006629,GO:0008962;gbkey=CDS;gene=pgpA;go_function=phosphatidylglycerophosphatase activity|0008962||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459415.1;locus_tag=C9E96_RS19385;product=phosphatidylglycerophosphatase A;protein_id=WP_000154063.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	7827	8807	.	-	.	ID=gene-C9E96_RS19390;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=C9E96_RS19390;old_locus_tag=C9E96_19900
NZ_PYJX01000192.1	Protein Homology	CDS	7827	8807	.	-	0	ID=cds-WP_000752133.1;Parent=gene-C9E96_RS19390;Dbxref=GenBank:WP_000752133.1;Name=WP_000752133.1;Ontology_term=GO:0009228,GO:0009030;gbkey=CDS;gene=thiL;go_function=thiamine-phosphate kinase activity|0009030||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308497.1;locus_tag=C9E96_RS19390;product=thiamine-phosphate kinase;protein_id=WP_000752133.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	8889	9308	.	-	.	ID=gene-C9E96_RS19395;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=C9E96_RS19395;old_locus_tag=C9E96_19905
NZ_PYJX01000192.1	Protein Homology	CDS	8889	9308	.	-	0	ID=cds-WP_000801129.1;Parent=gene-C9E96_RS19395;Dbxref=GenBank:WP_000801129.1;Name=WP_000801129.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusB;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459413.1;locus_tag=C9E96_RS19395;product=transcription antitermination factor NusB;protein_id=WP_000801129.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	9329	9799	.	-	.	ID=gene-C9E96_RS19400;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=C9E96_RS19400;old_locus_tag=C9E96_19910
NZ_PYJX01000192.1	Protein Homology	CDS	9329	9799	.	-	0	ID=cds-WP_001021372.1;Parent=gene-C9E96_RS19400;Dbxref=GenBank:WP_001021372.1;Name=WP_001021372.1;Ontology_term=GO:0000906,GO:0009349;gbkey=CDS;gene=ribH;go_component=riboflavin synthase complex|0009349||IEA;go_function=6%2C7-dimethyl-8-ribityllumazine synthase activity|0000906||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818760.1;locus_tag=C9E96_RS19400;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_001021372.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	9888	10991	.	-	.	ID=gene-C9E96_RS19405;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=C9E96_RS19405;old_locus_tag=C9E96_19915
NZ_PYJX01000192.1	Protein Homology	CDS	9888	10991	.	-	0	ID=cds-WP_023994050.1;Parent=gene-C9E96_RS19405;Dbxref=GenBank:WP_023994050.1;Name=WP_023994050.1;Ontology_term=GO:0008270,GO:0008703,GO:0008835,GO:0050661;gbkey=CDS;gene=ribD;go_function=zinc ion binding|0008270||IEA,5-amino-6-(5-phosphoribosylamino)uracil reductase activity|0008703||IEA,diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|0008835||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459411.1;locus_tag=C9E96_RS19405;product=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD;protein_id=WP_023994050.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	10995	11444	.	-	.	ID=gene-C9E96_RS19410;Name=nrdR;gbkey=Gene;gene=nrdR;gene_biotype=protein_coding;locus_tag=C9E96_RS19410;old_locus_tag=C9E96_19920
NZ_PYJX01000192.1	Protein Homology	CDS	10995	11444	.	-	0	ID=cds-WP_000543533.1;Parent=gene-C9E96_RS19410;Dbxref=GenBank:WP_000543533.1;Name=WP_000543533.1;Ontology_term=GO:0006355,GO:0008270,GO:0140110;gbkey=CDS;gene=nrdR;go_function=zinc ion binding|0008270||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017458860.1;locus_tag=C9E96_RS19410;product=transcriptional regulator NrdR;protein_id=WP_000543533.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	11596	12135	.	+	.	ID=gene-C9E96_RS19415;Name=C9E96_RS19415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19415;old_locus_tag=C9E96_19925
NZ_PYJX01000192.1	Protein Homology	CDS	11596	12135	.	+	0	ID=cds-WP_135369886.1;Parent=gene-C9E96_RS19415;Dbxref=GenBank:WP_135369886.1;Name=WP_135369886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459409.1;locus_tag=C9E96_RS19415;product=DUF3251 domain-containing protein;protein_id=WP_135369886.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	12435	13298	.	+	.	ID=gene-C9E96_RS19420;Name=C9E96_RS19420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19420;old_locus_tag=C9E96_19930
NZ_PYJX01000192.1	Protein Homology	CDS	12435	13298	.	+	0	ID=cds-WP_000752021.1;Parent=gene-C9E96_RS19420;Dbxref=GenBank:WP_000752021.1;Name=WP_000752021.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459408.1;locus_tag=C9E96_RS19420;product=nucleoside-specific channel-forming protein Tsx;protein_id=WP_000752021.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	13382	13489	.	-	.	ID=gene-C9E96_RS24445;Name=C9E96_RS24445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24445
NZ_PYJX01000192.1	Protein Homology	CDS	13382	13489	.	-	0	ID=cds-WP_000176312.1;Parent=gene-C9E96_RS24445;Dbxref=GenBank:WP_000176312.1;Name=WP_000176312.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000176312.1;locus_tag=C9E96_RS24445;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_000176312.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	13927	14274	.	-	.	ID=gene-C9E96_RS19435;Name=yajD;gbkey=Gene;gene=yajD;gene_biotype=protein_coding;locus_tag=C9E96_RS19435;old_locus_tag=C9E96_19945
NZ_PYJX01000192.1	Protein Homology	CDS	13927	14274	.	-	0	ID=cds-WP_000974818.1;Parent=gene-C9E96_RS19435;Dbxref=GenBank:WP_000974818.1;Name=WP_000974818.1;gbkey=CDS;gene=yajD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459406.1;locus_tag=C9E96_RS19435;product=HNH nuclease YajD;protein_id=WP_000974818.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	14444	15136	.	-	.	ID=gene-C9E96_RS19440;Name=C9E96_RS19440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19440;old_locus_tag=C9E96_19950
NZ_PYJX01000192.1	Protein Homology	CDS	14444	15136	.	-	0	ID=cds-WP_023202234.1;Parent=gene-C9E96_RS19440;Dbxref=GenBank:WP_023202234.1;Name=WP_023202234.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459405.1;locus_tag=C9E96_RS19440;product=helix-turn-helix transcriptional regulator;protein_id=WP_023202234.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	15162	15527	.	-	.	ID=gene-C9E96_RS19445;Name=C9E96_RS19445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19445;old_locus_tag=C9E96_19955
NZ_PYJX01000192.1	Protein Homology	CDS	15162	15527	.	-	0	ID=cds-WP_000793035.1;Parent=gene-C9E96_RS19445;Dbxref=GenBank:WP_000793035.1;Name=WP_000793035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459404.1;locus_tag=C9E96_RS19445;product=VOC family protein;protein_id=WP_000793035.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	15675	16646	.	-	.	ID=gene-C9E96_RS19450;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=C9E96_RS19450;old_locus_tag=C9E96_19960
NZ_PYJX01000192.1	Protein Homology	CDS	15675	16646	.	-	0	ID=cds-WP_000046629.1;Parent=gene-C9E96_RS19450;Dbxref=GenBank:WP_000046629.1;Name=WP_000046629.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secF;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459403.1;locus_tag=C9E96_RS19450;product=protein translocase subunit SecF;protein_id=WP_000046629.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	16657	18504	.	-	.	ID=gene-C9E96_RS19455;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=C9E96_RS19455;old_locus_tag=C9E96_19965
NZ_PYJX01000192.1	Protein Homology	CDS	16657	18504	.	-	0	ID=cds-WP_000934811.1;Parent=gene-C9E96_RS19455;Dbxref=GenBank:WP_000934811.1;Name=WP_000934811.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secD;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125127.1;locus_tag=C9E96_RS19455;product=protein translocase subunit SecD;protein_id=WP_000934811.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	18532	18864	.	-	.	ID=gene-C9E96_RS19460;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=C9E96_RS19460;old_locus_tag=C9E96_19970
NZ_PYJX01000192.1	Protein Homology	CDS	18532	18864	.	-	0	ID=cds-WP_000007628.1;Parent=gene-C9E96_RS19460;Dbxref=GenBank:WP_000007628.1;Name=WP_000007628.1;Ontology_term=GO:0009306,GO:0015450,GO:0005886;gbkey=CDS;gene=yajC;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000007628.1;locus_tag=C9E96_RS19460;product=preprotein translocase subunit YajC;protein_id=WP_000007628.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	18887	20014	.	-	.	ID=gene-C9E96_RS19465;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=C9E96_RS19465;old_locus_tag=C9E96_19975
NZ_PYJX01000192.1	Protein Homology	CDS	18887	20014	.	-	0	ID=cds-WP_000667302.1;Parent=gene-C9E96_RS19465;Dbxref=GenBank:WP_000667302.1;Name=WP_000667302.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=tRNA-guanosine(34) queuine transglycosylase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904808.1;locus_tag=C9E96_RS19465;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_000667302.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	20078	20224	.	-	.	ID=gene-C9E96_RS24000;Name=C9E96_RS24000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24000;old_locus_tag=C9E96_19980
NZ_PYJX01000192.1	GeneMarkS-2+	CDS	20078	20224	.	-	0	ID=cds-WP_001533948.1;Parent=gene-C9E96_RS24000;Dbxref=GenBank:WP_001533948.1;Name=WP_001533948.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS24000;product=hypothetical protein;protein_id=WP_001533948.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	20211	21275	.	-	.	ID=gene-C9E96_RS19470;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=C9E96_RS19470;old_locus_tag=C9E96_19985
NZ_PYJX01000192.1	Protein Homology	CDS	20211	21275	.	-	0	ID=cds-WP_001266534.1;Parent=gene-C9E96_RS19470;Dbxref=GenBank:WP_001266534.1;Name=WP_001266534.1;Ontology_term=GO:0006400,GO:0008616,GO:0051075,GO:0005737;gbkey=CDS;gene=queA;go_component=cytoplasm|0005737||IEA;go_function=S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity|0051075||IEA;go_process=tRNA modification|0006400||IEA,queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459399.1;locus_tag=C9E96_RS19470;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=WP_001266534.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	21369	21950	.	+	.	ID=gene-C9E96_RS19475;Name=acpH;gbkey=Gene;gene=acpH;gene_biotype=protein_coding;locus_tag=C9E96_RS19475;old_locus_tag=C9E96_19990
NZ_PYJX01000192.1	Protein Homology	CDS	21369	21950	.	+	0	ID=cds-WP_080204110.1;Parent=gene-C9E96_RS19475;Dbxref=GenBank:WP_080204110.1;Name=WP_080204110.1;Ontology_term=GO:0006633,GO:0008770;gbkey=CDS;gene=acpH;go_function=[acyl-carrier-protein] phosphodiesterase activity|0008770||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459398.1;locus_tag=C9E96_RS19475;product=ACP phosphodiesterase;protein_id=WP_080204110.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	22160	22762	.	+	.	ID=gene-C9E96_RS19480;Name=C9E96_RS19480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19480;old_locus_tag=C9E96_19995
NZ_PYJX01000192.1	Protein Homology	CDS	22160	22762	.	+	0	ID=cds-WP_000244731.1;Parent=gene-C9E96_RS19480;Dbxref=GenBank:WP_000244731.1;Name=WP_000244731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459397.1;locus_tag=C9E96_RS19480;product=peroxiredoxin;protein_id=WP_000244731.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	22834	24651	.	-	.	ID=gene-C9E96_RS19485;Name=malZ;gbkey=Gene;gene=malZ;gene_biotype=protein_coding;locus_tag=C9E96_RS19485;old_locus_tag=C9E96_20000
NZ_PYJX01000192.1	Protein Homology	CDS	22834	24651	.	-	0	ID=cds-WP_080204109.1;Parent=gene-C9E96_RS19485;Dbxref=GenBank:WP_080204109.1;Name=WP_080204109.1;Ontology_term=GO:0005975,GO:0004558;gbkey=CDS;gene=malZ;go_function=alpha-1%2C4-glucosidase activity|0004558||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459396.1;locus_tag=C9E96_RS19485;product=maltodextrin glucosidase;protein_id=WP_080204109.1;transl_table=11
NZ_PYJX01000192.1	RefSeq	gene	24813	26183	.	-	.	ID=gene-C9E96_RS19490;Name=proY;gbkey=Gene;gene=proY;gene_biotype=protein_coding;locus_tag=C9E96_RS19490;old_locus_tag=C9E96_20005
NZ_PYJX01000192.1	Protein Homology	CDS	24813	26183	.	-	0	ID=cds-WP_001555879.1;Parent=gene-C9E96_RS19490;Dbxref=GenBank:WP_001555879.1;Name=WP_001555879.1;Ontology_term=GO:0006865,GO:0055085,GO:0016020;gbkey=CDS;gene=proY;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459395.1;locus_tag=C9E96_RS19490;product=proline-specific permease ProY;protein_id=WP_001555879.1;transl_table=11
##sequence-region NZ_PYJX01000160.1 1 26192
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000160.1	RefSeq	region	1	26192	.	+	.	ID=NZ_PYJX01000160.1:1..26192;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000160.1	RefSeq	gene	52	1272	.	-	.	ID=gene-C9E96_RS14555;Name=coaBC;gbkey=Gene;gene=coaBC;gene_biotype=protein_coding;locus_tag=C9E96_RS14555;old_locus_tag=C9E96_14930
NZ_PYJX01000160.1	Protein Homology	CDS	52	1272	.	-	0	ID=cds-WP_167852893.1;Parent=gene-C9E96_RS14555;Dbxref=GenBank:WP_167852893.1;Name=WP_167852893.1;Ontology_term=GO:0015937,GO:0015941,GO:0004632,GO:0004633,GO:0010181;gbkey=CDS;gene=coaBC;go_function=phosphopantothenate--cysteine ligase activity|0004632||IEA,phosphopantothenoylcysteine decarboxylase activity|0004633||IEA,FMN binding|0010181||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA,pantothenate catabolic process|0015941||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020231444.1;locus_tag=C9E96_RS14555;product=bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC;protein_id=WP_167852893.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	1448	2113	.	+	.	ID=gene-C9E96_RS14560;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=C9E96_RS14560;old_locus_tag=C9E96_14935
NZ_PYJX01000160.1	Protein Homology	CDS	1448	2113	.	+	0	ID=cds-WP_000380129.1;Parent=gene-C9E96_RS14560;Dbxref=GenBank:WP_000380129.1;Name=WP_000380129.1;gbkey=CDS;gene=radC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462629.1;locus_tag=C9E96_RS14560;product=RadC family protein;protein_id=WP_000380129.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	2331	2567	.	+	.	ID=gene-C9E96_RS14565;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=C9E96_RS14565;old_locus_tag=C9E96_14940
NZ_PYJX01000160.1	Protein Homology	CDS	2331	2567	.	+	0	ID=cds-WP_001519051.1;Parent=gene-C9E96_RS14565;Dbxref=GenBank:WP_001519051.1;Name=WP_001519051.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmB;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008457442.1;locus_tag=C9E96_RS14565;product=50S ribosomal protein L28;protein_id=WP_001519051.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	2588	2755	.	+	.	ID=gene-C9E96_RS14570;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=C9E96_RS14570;old_locus_tag=C9E96_14945
NZ_PYJX01000160.1	Protein Homology	CDS	2588	2755	.	+	0	ID=cds-WP_001051798.1;Parent=gene-C9E96_RS14570;Dbxref=GenBank:WP_001051798.1;Name=WP_001051798.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmG;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010847629.1;locus_tag=C9E96_RS14570;product=50S ribosomal protein L33;protein_id=WP_001051798.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	2853	3662	.	+	.	ID=gene-C9E96_RS14575;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=C9E96_RS14575;old_locus_tag=C9E96_14950
NZ_PYJX01000160.1	Protein Homology	CDS	2853	3662	.	+	0	ID=cds-WP_023993464.1;Parent=gene-C9E96_RS14575;Dbxref=GenBank:WP_023993464.1;Name=WP_023993464.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462626.1;locus_tag=C9E96_RS14575;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_023993464.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	3690	4169	.	-	.	ID=gene-C9E96_RS14580;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=C9E96_RS14580;old_locus_tag=C9E96_14955
NZ_PYJX01000160.1	Protein Homology	CDS	3690	4169	.	-	0	ID=cds-WP_001171884.1;Parent=gene-C9E96_RS14580;Dbxref=GenBank:WP_001171884.1;Name=WP_001171884.1;Ontology_term=GO:0015937,GO:0004595;gbkey=CDS;gene=coaD;go_function=pantetheine-phosphate adenylyltransferase activity|0004595||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462625.1;locus_tag=C9E96_RS14580;product=pantetheine-phosphate adenylyltransferase;protein_id=WP_001171884.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	4178	5455	.	-	.	ID=gene-C9E96_RS14585;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=C9E96_RS14585;old_locus_tag=C9E96_14960
NZ_PYJX01000160.1	Protein Homology	CDS	4178	5455	.	-	0	ID=cds-WP_023993465.1;Parent=gene-C9E96_RS14585;Dbxref=GenBank:WP_023993465.1;Name=WP_023993465.1;Ontology_term=GO:0016740;gbkey=CDS;gene=waaA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462624.1;locus_tag=C9E96_RS14585;product=lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_023993465.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	5864	6934	.	+	.	ID=gene-C9E96_RS14590;Name=rfaQ;gbkey=Gene;gene=rfaQ;gene_biotype=protein_coding;locus_tag=C9E96_RS14590;old_locus_tag=C9E96_14965
NZ_PYJX01000160.1	Protein Homology	CDS	5864	6934	.	+	0	ID=cds-WP_080203799.1;Parent=gene-C9E96_RS14590;Dbxref=GenBank:WP_080203799.1;Name=WP_080203799.1;Ontology_term=GO:0016757;gbkey=CDS;gene=rfaQ;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521713.1;locus_tag=C9E96_RS14590;product=lipopolysaccharide core heptosyltransferase RfaQ;protein_id=WP_080203799.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	6931	8055	.	+	.	ID=gene-C9E96_RS14595;Name=C9E96_RS14595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14595;old_locus_tag=C9E96_14970
NZ_PYJX01000160.1	Protein Homology	CDS	6931	8055	.	+	0	ID=cds-WP_023993466.1;Parent=gene-C9E96_RS14595;Dbxref=GenBank:WP_023993466.1;Name=WP_023993466.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462622.1;locus_tag=C9E96_RS14595;product=glycosyltransferase family 4 protein;protein_id=WP_023993466.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	8048	8845	.	+	.	ID=gene-C9E96_RS14600;Name=rfaP;gbkey=Gene;gene=rfaP;gene_biotype=protein_coding;locus_tag=C9E96_RS14600;old_locus_tag=C9E96_14975
NZ_PYJX01000160.1	Protein Homology	CDS	8048	8845	.	+	0	ID=cds-WP_000229825.1;Parent=gene-C9E96_RS14600;Dbxref=GenBank:WP_000229825.1;Name=WP_000229825.1;Ontology_term=GO:0009103,GO:0016301;gbkey=CDS;gene=rfaP;go_function=kinase activity|0016301||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462621.1;locus_tag=C9E96_RS14600;product=lipopolysaccharide core heptose(I) kinase RfaP;protein_id=WP_000229825.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	pseudogene	8901	9062	.	+	.	ID=gene-C9E96_RS14605;Name=C9E96_RS14605;end_range=9062,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS14605;old_locus_tag=C9E96_14980;partial=true;pseudo=true
NZ_PYJX01000160.1	Protein Homology	CDS	8901	9062	.	+	0	ID=cds-C9E96_RS14605;Parent=gene-C9E96_RS14605;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=9062,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001280096.1;locus_tag=C9E96_RS14605;partial=true;product=glycosyltransferase family 8 protein;pseudo=true;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	9180	10259	.	+	.	ID=gene-C9E96_RS14615;Name=waaB;gbkey=Gene;gene=waaB;gene_biotype=protein_coding;gene_synonym=rfaB;locus_tag=C9E96_RS14615;old_locus_tag=C9E96_14990
NZ_PYJX01000160.1	Protein Homology	CDS	9180	10259	.	+	0	ID=cds-WP_023993467.1;Parent=gene-C9E96_RS14615;Dbxref=GenBank:WP_023993467.1;Name=WP_023993467.1;gbkey=CDS;gene=waaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462619.1;locus_tag=C9E96_RS14615;product=lipopolysaccharide 1%2C6-galactosyltransferase;protein_id=WP_023993467.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	10265	11278	.	+	.	ID=gene-C9E96_RS14620;Name=waaO;gbkey=Gene;gene=waaO;gene_biotype=protein_coding;gene_synonym=rfaI;locus_tag=C9E96_RS14620;old_locus_tag=C9E96_14995
NZ_PYJX01000160.1	Protein Homology	CDS	10265	11278	.	+	0	ID=cds-WP_023193300.1;Parent=gene-C9E96_RS14620;Dbxref=GenBank:WP_023193300.1;Name=WP_023193300.1;Ontology_term=GO:0009103,GO:0008918;gbkey=CDS;gene=waaO;go_function=lipopolysaccharide 3-alpha-galactosyltransferase activity|0008918||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462618.1;locus_tag=C9E96_RS14620;product=lipopolysaccharide 3-alpha-galactosyltransferase;protein_id=WP_023193300.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	11296	12309	.	+	.	ID=gene-C9E96_RS14625;Name=rfaJ;gbkey=Gene;gene=rfaJ;gene_biotype=protein_coding;locus_tag=C9E96_RS14625;old_locus_tag=C9E96_15000
NZ_PYJX01000160.1	Protein Homology	CDS	11296	12309	.	+	0	ID=cds-WP_024157567.1;Parent=gene-C9E96_RS14625;Dbxref=GenBank:WP_024157567.1;Name=WP_024157567.1;gbkey=CDS;gene=rfaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462617.1;locus_tag=C9E96_RS14625;product=lipopolysaccharide 1%2C2-glucosyltransferase RfaJ;protein_id=WP_024157567.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	12332	13030	.	+	.	ID=gene-C9E96_RS14630;Name=rfaY;gbkey=Gene;gene=rfaY;gene_biotype=protein_coding;locus_tag=C9E96_RS14630;old_locus_tag=C9E96_15005
NZ_PYJX01000160.1	Protein Homology	CDS	12332	13030	.	+	0	ID=cds-WP_020838487.1;Parent=gene-C9E96_RS14630;Dbxref=GenBank:WP_020838487.1;Name=WP_020838487.1;gbkey=CDS;gene=rfaY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462616.1;locus_tag=C9E96_RS14630;product=lipopolysaccharide core heptose(II) kinase RfaY;protein_id=WP_020838487.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	13180	13989	.	+	.	ID=gene-C9E96_RS14635;Name=waaZ;gbkey=Gene;gene=waaZ;gene_biotype=protein_coding;locus_tag=C9E96_RS14635;old_locus_tag=C9E96_15010
NZ_PYJX01000160.1	Protein Homology	CDS	13180	13989	.	+	0	ID=cds-WP_000536017.1;Parent=gene-C9E96_RS14635;Dbxref=GenBank:WP_000536017.1;Name=WP_000536017.1;gbkey=CDS;gene=waaZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462615.1;locus_tag=C9E96_RS14635;product=3-deoxy-D-manno-oct-2-ulosonate III transferase WaaZ;protein_id=WP_000536017.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	14089	15234	.	+	.	ID=gene-C9E96_RS14640;Name=C9E96_RS14640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14640;old_locus_tag=C9E96_15015
NZ_PYJX01000160.1	Protein Homology	CDS	14089	15234	.	+	0	ID=cds-WP_000591834.1;Parent=gene-C9E96_RS14640;Dbxref=GenBank:WP_000591834.1;Name=WP_000591834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462614.1;locus_tag=C9E96_RS14640;product=lipopolysaccharide N-acetylglucosaminyltransferase;protein_id=WP_000591834.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	15291	16505	.	-	.	ID=gene-C9E96_RS14645;Name=rfaL;gbkey=Gene;gene=rfaL;gene_biotype=protein_coding;locus_tag=C9E96_RS14645;old_locus_tag=C9E96_15020
NZ_PYJX01000160.1	Protein Homology	CDS	15291	16505	.	-	0	ID=cds-WP_080203798.1;Parent=gene-C9E96_RS14645;Dbxref=GenBank:WP_080203798.1;Name=WP_080203798.1;gbkey=CDS;gene=rfaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462613.1;locus_tag=C9E96_RS14645;product=O-antigen ligase RfaL;protein_id=WP_080203798.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	16545	17498	.	-	.	ID=gene-C9E96_RS14650;Name=rfaC;gbkey=Gene;gene=rfaC;gene_biotype=protein_coding;locus_tag=C9E96_RS14650;old_locus_tag=C9E96_15025
NZ_PYJX01000160.1	Protein Homology	CDS	16545	17498	.	-	0	ID=cds-WP_001264617.1;Parent=gene-C9E96_RS14650;Dbxref=GenBank:WP_001264617.1;Name=WP_001264617.1;Ontology_term=GO:0009244,GO:0008920;gbkey=CDS;gene=rfaC;go_function=lipopolysaccharide heptosyltransferase activity|0008920||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462612.1;locus_tag=C9E96_RS14650;product=lipopolysaccharide heptosyltransferase RfaC;protein_id=WP_001264617.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	17498	18544	.	-	.	ID=gene-C9E96_RS14655;Name=rfaF;gbkey=Gene;gene=rfaF;gene_biotype=protein_coding;locus_tag=C9E96_RS14655;old_locus_tag=C9E96_15030
NZ_PYJX01000160.1	Protein Homology	CDS	17498	18544	.	-	0	ID=cds-WP_080203797.1;Parent=gene-C9E96_RS14655;Dbxref=GenBank:WP_080203797.1;Name=WP_080203797.1;Ontology_term=GO:0009103,GO:0016757;gbkey=CDS;gene=rfaF;go_function=glycosyltransferase activity|0016757||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462611.1;locus_tag=C9E96_RS14655;product=ADP-heptose--LPS heptosyltransferase RfaF;protein_id=WP_080203797.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	18547	19479	.	-	.	ID=gene-C9E96_RS14660;Name=rfaD;gbkey=Gene;gene=rfaD;gene_biotype=protein_coding;locus_tag=C9E96_RS14660;old_locus_tag=C9E96_15035
NZ_PYJX01000160.1	Protein Homology	CDS	18547	19479	.	-	0	ID=cds-WP_000587771.1;Parent=gene-C9E96_RS14660;Dbxref=GenBank:WP_000587771.1;Name=WP_000587771.1;Ontology_term=GO:0005975,GO:0008712;gbkey=CDS;gene=rfaD;go_function=ADP-glyceromanno-heptose 6-epimerase activity|0008712||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233050.1;locus_tag=C9E96_RS14660;product=ADP-glyceromanno-heptose 6-epimerase;protein_id=WP_000587771.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	19682	20878	.	+	.	ID=gene-C9E96_RS14665;Name=kbl;gbkey=Gene;gene=kbl;gene_biotype=protein_coding;locus_tag=C9E96_RS14665;old_locus_tag=C9E96_15040
NZ_PYJX01000160.1	Protein Homology	CDS	19682	20878	.	+	0	ID=cds-WP_001213800.1;Parent=gene-C9E96_RS14665;Dbxref=GenBank:WP_001213800.1;Name=WP_001213800.1;Ontology_term=GO:0006567,GO:0008890;gbkey=CDS;gene=kbl;go_function=glycine C-acetyltransferase activity|0008890||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239151.1;locus_tag=C9E96_RS14665;product=glycine C-acetyltransferase;protein_id=WP_001213800.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	20888	21913	.	+	.	ID=gene-C9E96_RS14670;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=C9E96_RS14670;old_locus_tag=C9E96_15045
NZ_PYJX01000160.1	Protein Homology	CDS	20888	21913	.	+	0	ID=cds-WP_135494340.1;Parent=gene-C9E96_RS14670;Dbxref=GenBank:WP_135494340.1;Name=WP_135494340.1;Ontology_term=GO:0006567,GO:0008743;gbkey=CDS;gene=tdh;go_function=L-threonine 3-dehydrogenase activity|0008743||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120462.1;locus_tag=C9E96_RS14670;product=L-threonine 3-dehydrogenase;protein_id=WP_135494340.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	22207	23241	.	+	.	ID=gene-C9E96_RS14675;Name=C9E96_RS14675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14675;old_locus_tag=C9E96_15050
NZ_PYJX01000160.1	Protein Homology	CDS	22207	23241	.	+	0	ID=cds-WP_080203795.1;Parent=gene-C9E96_RS14675;Dbxref=GenBank:WP_080203795.1;Name=WP_080203795.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462607.1;locus_tag=C9E96_RS14675;product=glycosyltransferase;protein_id=WP_080203795.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	23228	24190	.	-	.	ID=gene-C9E96_RS14680;Name=C9E96_RS14680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS14680;old_locus_tag=C9E96_15055
NZ_PYJX01000160.1	Protein Homology	CDS	23228	24190	.	-	0	ID=cds-WP_080203794.1;Parent=gene-C9E96_RS14680;Dbxref=GenBank:WP_080203794.1;Name=WP_080203794.1;Ontology_term=GO:0005975,GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462606.1;locus_tag=C9E96_RS14680;product=divergent polysaccharide deacetylase family protein;protein_id=WP_080203794.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	24194	25453	.	-	.	ID=gene-C9E96_RS14685;Name=envC;gbkey=Gene;gene=envC;gene_biotype=protein_coding;locus_tag=C9E96_RS14685;old_locus_tag=C9E96_15060
NZ_PYJX01000160.1	Protein Homology	CDS	24194	25453	.	-	0	ID=cds-WP_058814511.1;Parent=gene-C9E96_RS14685;Dbxref=GenBank:WP_058814511.1;Name=WP_058814511.1;gbkey=CDS;gene=envC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418070.6;locus_tag=C9E96_RS14685;product=murein hydrolase activator EnvC;protein_id=WP_058814511.1;transl_table=11
NZ_PYJX01000160.1	RefSeq	gene	25487	26173	.	-	.	ID=gene-C9E96_RS14690;Name=gpmI;gbkey=Gene;gene=gpmI;gene_biotype=protein_coding;locus_tag=C9E96_RS14690;old_locus_tag=C9E96_15065
NZ_PYJX01000160.1	Protein Homology	CDS	25487	26173	.	-	0	ID=cds-WP_280951921.1;Parent=gene-C9E96_RS14690;Dbxref=GenBank:WP_280951921.1;Name=WP_280951921.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmI;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462604.1;locus_tag=C9E96_RS14690;product=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase;protein_id=WP_280951921.1;transl_table=11
##sequence-region NZ_PYJX01000239.1 1 26189
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000239.1	RefSeq	region	1	26189	.	+	.	ID=NZ_PYJX01000239.1:1..26189;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000239.1	RefSeq	gene	1	752	.	-	.	ID=gene-C9E96_RS22620;Name=C9E96_RS22620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22620;old_locus_tag=C9E96_23195;partial=true;start_range=.,1
NZ_PYJX01000239.1	Protein Homology	CDS	1	752	.	-	0	ID=cds-WP_135494696.1;Parent=gene-C9E96_RS22620;Dbxref=GenBank:WP_135494696.1;Name=WP_135494696.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9E96_RS22620;partial=true;product=pyruvate carboxylase subunit B;protein_id=WP_135494696.1;start_range=.,1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	768	1010	.	-	.	ID=gene-C9E96_RS22625;Name=C9E96_RS22625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22625;old_locus_tag=C9E96_23200
NZ_PYJX01000239.1	Protein Homology	CDS	768	1010	.	-	0	ID=cds-WP_001538909.1;Parent=gene-C9E96_RS22625;Dbxref=GenBank:WP_001538909.1;Name=WP_001538909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459746.1;locus_tag=C9E96_RS22625;product=oxaloacetate decarboxylase subunit gamma;protein_id=WP_001538909.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	1169	2509	.	-	.	ID=gene-C9E96_RS22630;Name=citS;gbkey=Gene;gene=citS;gene_biotype=protein_coding;locus_tag=C9E96_RS22630;old_locus_tag=C9E96_23205
NZ_PYJX01000239.1	Protein Homology	CDS	1169	2509	.	-	0	ID=cds-WP_000183596.1;Parent=gene-C9E96_RS22630;Dbxref=GenBank:WP_000183596.1;Name=WP_000183596.1;Ontology_term=GO:0006101,GO:0006814,GO:0008514,GO:0015293;gbkey=CDS;gene=citS;go_function=organic anion transmembrane transporter activity|0008514||IEA,symporter activity|0015293||IEA;go_process=citrate metabolic process|0006101||IEA,sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459062.1;locus_tag=C9E96_RS22630;product=citrate/sodium symporter CitS;protein_id=WP_000183596.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	2754	3797	.	+	.	ID=gene-C9E96_RS22635;Name=citC;gbkey=Gene;gene=citC;gene_biotype=protein_coding;locus_tag=C9E96_RS22635;old_locus_tag=C9E96_23210
NZ_PYJX01000239.1	Protein Homology	CDS	2754	3797	.	+	0	ID=cds-WP_001181444.1;Parent=gene-C9E96_RS22635;Dbxref=GenBank:WP_001181444.1;Name=WP_001181444.1;Ontology_term=GO:0006101,GO:0008771;gbkey=CDS;gene=citC;go_function=[citrate (pro-3S)-lyase] ligase activity|0008771||IEA;go_process=citrate metabolic process|0006101||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459063.1;locus_tag=C9E96_RS22635;product=[citrate (pro-3S)-lyase] ligase;protein_id=WP_001181444.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	3827	4120	.	+	.	ID=gene-C9E96_RS22640;Name=citD;gbkey=Gene;gene=citD;gene_biotype=protein_coding;locus_tag=C9E96_RS22640;old_locus_tag=C9E96_23215
NZ_PYJX01000239.1	Protein Homology	CDS	3827	4120	.	+	0	ID=cds-WP_000691461.1;Parent=gene-C9E96_RS22640;Dbxref=GenBank:WP_000691461.1;Name=WP_000691461.1;Ontology_term=GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citD;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459064.1;locus_tag=C9E96_RS22640;product=citrate lyase acyl carrier protein;protein_id=WP_000691461.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	4117	4986	.	+	.	ID=gene-C9E96_RS22645;Name=citE;gbkey=Gene;gene=citE;gene_biotype=protein_coding;locus_tag=C9E96_RS22645;old_locus_tag=C9E96_23220
NZ_PYJX01000239.1	Protein Homology	CDS	4117	4986	.	+	0	ID=cds-WP_135494699.1;Parent=gene-C9E96_RS22645;Dbxref=GenBank:WP_135494699.1;Name=WP_135494699.1;Ontology_term=GO:0006084,GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citE;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=acetyl-CoA metabolic process|0006084||IEA,fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459065.1;locus_tag=C9E96_RS22645;product=citrate (pro-3S)-lyase subunit beta;protein_id=WP_135494699.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	4997	6517	.	+	.	ID=gene-C9E96_RS22650;Name=citF;gbkey=Gene;gene=citF;gene_biotype=protein_coding;locus_tag=C9E96_RS22650;old_locus_tag=C9E96_23225
NZ_PYJX01000239.1	Protein Homology	CDS	4997	6517	.	+	0	ID=cds-WP_000665573.1;Parent=gene-C9E96_RS22650;Dbxref=GenBank:WP_000665573.1;Name=WP_000665573.1;Ontology_term=GO:0006113,GO:0008814,GO:0008815,GO:0009346;gbkey=CDS;gene=citF;go_component=ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate CoA-transferase activity|0008814||IEA,citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459066.1;locus_tag=C9E96_RS22650;product=citrate lyase subunit alpha;protein_id=WP_000665573.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	6517	7068	.	+	.	ID=gene-C9E96_RS22655;Name=citX;gbkey=Gene;gene=citX;gene_biotype=protein_coding;locus_tag=C9E96_RS22655;old_locus_tag=C9E96_23230
NZ_PYJX01000239.1	Protein Homology	CDS	6517	7068	.	+	0	ID=cds-WP_000679050.1;Parent=gene-C9E96_RS22655;Dbxref=GenBank:WP_000679050.1;Name=WP_000679050.1;Ontology_term=GO:0051191,GO:0050519;gbkey=CDS;gene=citX;go_function=holo-citrate lyase synthase activity|0050519||IEA;go_process=prosthetic group biosynthetic process|0051191||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459067.1;locus_tag=C9E96_RS22655;product=citrate lyase holo-[acyl-carrier protein] synthase;protein_id=WP_000679050.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	7046	7954	.	+	.	ID=gene-C9E96_RS22660;Name=citG;gbkey=Gene;gene=citG;gene_biotype=protein_coding;locus_tag=C9E96_RS22660;old_locus_tag=C9E96_23235
NZ_PYJX01000239.1	Protein Homology	CDS	7046	7954	.	+	0	ID=cds-WP_001103238.1;Parent=gene-C9E96_RS22660;Dbxref=GenBank:WP_001103238.1;Name=WP_001103238.1;Ontology_term=GO:0016310,GO:0019361,GO:0005524,GO:0046917;gbkey=CDS;gene=citG;go_function=ATP binding|0005524||IEA,triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=phosphorylation|0016310||IEA,2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process|0019361||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459068.1;locus_tag=C9E96_RS22660;product=triphosphoribosyl-dephospho-CoA synthase CitG;protein_id=WP_001103238.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	8134	8955	.	+	.	ID=gene-C9E96_RS22665;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;locus_tag=C9E96_RS22665;old_locus_tag=C9E96_23240
NZ_PYJX01000239.1	Protein Homology	CDS	8134	8955	.	+	0	ID=cds-WP_000544037.1;Parent=gene-C9E96_RS22665;Dbxref=GenBank:WP_000544037.1;Name=WP_000544037.1;Ontology_term=GO:0009089,GO:0008839;gbkey=CDS;gene=dapB;go_function=4-hydroxy-tetrahydrodipicolinate reductase|0008839||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459069.1;locus_tag=C9E96_RS22665;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_000544037.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	9082	9357	.	-	.	ID=gene-C9E96_RS24365;Name=C9E96_RS24365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24365
NZ_PYJX01000239.1	GeneMarkS-2+	CDS	9082	9357	.	-	0	ID=cds-WP_001534402.1;Parent=gene-C9E96_RS24365;Dbxref=GenBank:WP_001534402.1;Name=WP_001534402.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS24365;product=hypothetical protein;protein_id=WP_001534402.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	9994	11142	.	+	.	ID=gene-C9E96_RS22675;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=C9E96_RS22675;old_locus_tag=C9E96_23250
NZ_PYJX01000239.1	Protein Homology	CDS	9994	11142	.	+	0	ID=cds-WP_135494702.1;Parent=gene-C9E96_RS22675;Dbxref=GenBank:WP_135494702.1;Name=WP_135494702.1;Ontology_term=GO:0006207,GO:0006541,GO:0004088;gbkey=CDS;gene=carA;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459071.1;locus_tag=C9E96_RS22675;product=glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit;protein_id=WP_135494702.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	11161	14388	.	+	.	ID=gene-C9E96_RS22680;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=C9E96_RS22680;old_locus_tag=C9E96_23255
NZ_PYJX01000239.1	Protein Homology	CDS	11161	14388	.	+	0	ID=cds-WP_135494705.1;Parent=gene-C9E96_RS22680;Dbxref=GenBank:WP_135494705.1;Name=WP_135494705.1;Ontology_term=GO:0008152,GO:0005524,GO:0046872;gbkey=CDS;gene=carB;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459072.1;locus_tag=C9E96_RS22680;product=carbamoyl-phosphate synthase large subunit;protein_id=WP_135494705.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	14662	15057	.	+	.	ID=gene-C9E96_RS22685;Name=caiF;gbkey=Gene;gene=caiF;gene_biotype=protein_coding;locus_tag=C9E96_RS22685;old_locus_tag=C9E96_23260
NZ_PYJX01000239.1	Protein Homology	CDS	14662	15057	.	+	0	ID=cds-WP_000333324.1;Parent=gene-C9E96_RS22685;Dbxref=GenBank:WP_000333324.1;Name=WP_000333324.1;gbkey=CDS;gene=caiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459073.1;locus_tag=C9E96_RS22685;product=carnitine metabolism transcriptional regulator CaiF;protein_id=WP_000333324.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	15135	15731	.	-	.	ID=gene-C9E96_RS22690;Name=caiE;gbkey=Gene;gene=caiE;gene_biotype=protein_coding;locus_tag=C9E96_RS22690;old_locus_tag=C9E96_23265
NZ_PYJX01000239.1	Protein Homology	CDS	15135	15731	.	-	0	ID=cds-WP_000122863.1;Parent=gene-C9E96_RS22690;Dbxref=GenBank:WP_000122863.1;Name=WP_000122863.1;gbkey=CDS;gene=caiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459074.1;locus_tag=C9E96_RS22690;product=carnitine operon protein CaiE;protein_id=WP_000122863.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	15841	16626	.	-	.	ID=gene-C9E96_RS22695;Name=caiD;gbkey=Gene;gene=caiD;gene_biotype=protein_coding;locus_tag=C9E96_RS22695;old_locus_tag=C9E96_23270
NZ_PYJX01000239.1	Protein Homology	CDS	15841	16626	.	-	0	ID=cds-WP_000004385.1;Parent=gene-C9E96_RS22695;Dbxref=GenBank:WP_000004385.1;Name=WP_000004385.1;Ontology_term=GO:0016836;gbkey=CDS;gene=caiD;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459075.1;locus_tag=C9E96_RS22695;product=crotonobetainyl-CoA hydratase;protein_id=WP_000004385.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	16680	18233	.	-	.	ID=gene-C9E96_RS22700;Name=caiC;gbkey=Gene;gene=caiC;gene_biotype=protein_coding;locus_tag=C9E96_RS22700;old_locus_tag=C9E96_23275
NZ_PYJX01000239.1	Protein Homology	CDS	16680	18233	.	-	0	ID=cds-WP_001527592.1;Parent=gene-C9E96_RS22700;Dbxref=GenBank:WP_001527592.1;Name=WP_001527592.1;Ontology_term=GO:0009437,GO:0016405;gbkey=CDS;gene=caiC;go_function=CoA-ligase activity|0016405||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459076.1;locus_tag=C9E96_RS22700;product=crotonobetaine/carnitine-CoA ligase;protein_id=WP_001527592.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	18296	19513	.	-	.	ID=gene-C9E96_RS22705;Name=caiB;gbkey=Gene;gene=caiB;gene_biotype=protein_coding;locus_tag=C9E96_RS22705;old_locus_tag=C9E96_23280
NZ_PYJX01000239.1	Protein Homology	CDS	18296	19513	.	-	0	ID=cds-WP_001016212.1;Parent=gene-C9E96_RS22705;Dbxref=GenBank:WP_001016212.1;Name=WP_001016212.1;Ontology_term=GO:0009437,GO:0016782;gbkey=CDS;gene=caiB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459077.1;locus_tag=C9E96_RS22705;product=L-carnitine CoA-transferase;protein_id=WP_001016212.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	19625	20767	.	-	.	ID=gene-C9E96_RS22710;Name=caiA;gbkey=Gene;gene=caiA;gene_biotype=protein_coding;locus_tag=C9E96_RS22710;old_locus_tag=C9E96_23285
NZ_PYJX01000239.1	Protein Homology	CDS	19625	20767	.	-	0	ID=cds-WP_000347134.1;Parent=gene-C9E96_RS22710;Dbxref=GenBank:WP_000347134.1;Name=WP_000347134.1;Ontology_term=GO:0009437,GO:0003995,GO:0016627;gbkey=CDS;gene=caiA;go_function=acyl-CoA dehydrogenase activity|0003995||IEA,oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124373.1;locus_tag=C9E96_RS22710;product=crotonobetainyl-CoA dehydrogenase;protein_id=WP_000347134.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	20802	22319	.	-	.	ID=gene-C9E96_RS22715;Name=caiT;gbkey=Gene;gene=caiT;gene_biotype=protein_coding;locus_tag=C9E96_RS22715;old_locus_tag=C9E96_23290
NZ_PYJX01000239.1	Protein Homology	CDS	20802	22319	.	-	0	ID=cds-WP_000787073.1;Parent=gene-C9E96_RS22715;Dbxref=GenBank:WP_000787073.1;Name=WP_000787073.1;gbkey=CDS;gene=caiT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459079.1;locus_tag=C9E96_RS22715;product=L-carnitine/gamma-butyrobetaine antiporter;protein_id=WP_000787073.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	22800	23570	.	+	.	ID=gene-C9E96_RS22720;Name=C9E96_RS22720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22720;old_locus_tag=C9E96_23300
NZ_PYJX01000239.1	Protein Homology	CDS	22800	23570	.	+	0	ID=cds-WP_000692185.1;Parent=gene-C9E96_RS22720;Dbxref=GenBank:WP_000692185.1;Name=WP_000692185.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459080.1;locus_tag=C9E96_RS22720;product=electron transfer flavoprotein FixA;protein_id=WP_000692185.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	23586	24527	.	+	.	ID=gene-C9E96_RS22725;Name=C9E96_RS22725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22725;old_locus_tag=C9E96_23305
NZ_PYJX01000239.1	Protein Homology	CDS	23586	24527	.	+	0	ID=cds-WP_023193565.1;Parent=gene-C9E96_RS22725;Dbxref=GenBank:WP_023193565.1;Name=WP_023193565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459081.1;locus_tag=C9E96_RS22725;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=WP_023193565.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	24577	25863	.	+	.	ID=gene-C9E96_RS22730;Name=C9E96_RS22730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22730;old_locus_tag=C9E96_23310
NZ_PYJX01000239.1	Protein Homology	CDS	24577	25863	.	+	0	ID=cds-WP_023228077.1;Parent=gene-C9E96_RS22730;Dbxref=GenBank:WP_023228077.1;Name=WP_023228077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459082.1;locus_tag=C9E96_RS22730;product=FAD-dependent oxidoreductase;protein_id=WP_023228077.1;transl_table=11
NZ_PYJX01000239.1	RefSeq	gene	25860	26147	.	+	.	ID=gene-C9E96_RS22735;Name=fixX;gbkey=Gene;gene=fixX;gene_biotype=protein_coding;locus_tag=C9E96_RS22735;old_locus_tag=C9E96_23315
NZ_PYJX01000239.1	Protein Homology	CDS	25860	26147	.	+	0	ID=cds-WP_135494708.1;Parent=gene-C9E96_RS22735;Dbxref=GenBank:WP_135494708.1;Name=WP_135494708.1;gbkey=CDS;gene=fixX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459083.1;locus_tag=C9E96_RS22735;product=ferredoxin-like protein FixX;protein_id=WP_135494708.1;transl_table=11
##sequence-region NZ_PYJX01000246.1 1 26153
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000246.1	RefSeq	region	1	26153	.	+	.	ID=NZ_PYJX01000246.1:1..26153;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000246.1	RefSeq	gene	1	1043	.	-	.	ID=gene-C9E96_RS23245;Name=C9E96_RS23245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23245;old_locus_tag=C9E96_23830;partial=true;start_range=.,1
NZ_PYJX01000246.1	Protein Homology	CDS	1	1043	.	-	0	ID=cds-WP_135494751.1;Parent=gene-C9E96_RS23245;Dbxref=GenBank:WP_135494751.1;Name=WP_135494751.1;Ontology_term=GO:0006508,GO:0004252;gbkey=CDS;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459214.1;locus_tag=C9E96_RS23245;partial=true;product=Do family serine endopeptidase;protein_id=WP_135494751.1;start_range=.,1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	1173	2690	.	-	.	ID=gene-C9E96_RS23250;Name=dgt;gbkey=Gene;gene=dgt;gene_biotype=protein_coding;locus_tag=C9E96_RS23250;old_locus_tag=C9E96_23835
NZ_PYJX01000246.1	Protein Homology	CDS	1173	2690	.	-	0	ID=cds-WP_000146450.1;Parent=gene-C9E96_RS23250;Dbxref=GenBank:WP_000146450.1;Name=WP_000146450.1;Ontology_term=GO:0006203,GO:0000287,GO:0008832;gbkey=CDS;gene=dgt;go_function=magnesium ion binding|0000287||IEA,dGTPase activity|0008832||IEA;go_process=dGTP catabolic process|0006203||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459213.1;locus_tag=C9E96_RS23250;product=dGTPase;protein_id=WP_000146450.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	2775	3473	.	+	.	ID=gene-C9E96_RS23255;Name=mtnN;gbkey=Gene;gene=mtnN;gene_biotype=protein_coding;locus_tag=C9E96_RS23255;old_locus_tag=C9E96_23840
NZ_PYJX01000246.1	Protein Homology	CDS	2775	3473	.	+	0	ID=cds-WP_080203739.1;Parent=gene-C9E96_RS23255;Dbxref=GenBank:WP_080203739.1;Name=WP_080203739.1;Ontology_term=GO:0009164,GO:0019509,GO:0008782,GO:0008930;gbkey=CDS;gene=mtnN;go_function=adenosylhomocysteine nucleosidase activity|0008782||IEA,methylthioadenosine nucleosidase activity|0008930||IEA;go_process=nucleoside catabolic process|0009164||IEA,L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459212.1;locus_tag=C9E96_RS23255;product=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase;protein_id=WP_080203739.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	3466	4266	.	+	.	ID=gene-C9E96_RS23260;Name=btuF;gbkey=Gene;gene=btuF;gene_biotype=protein_coding;locus_tag=C9E96_RS23260;old_locus_tag=C9E96_23845
NZ_PYJX01000246.1	Protein Homology	CDS	3466	4266	.	+	0	ID=cds-WP_001118838.1;Parent=gene-C9E96_RS23260;Dbxref=GenBank:WP_001118838.1;Name=WP_001118838.1;Ontology_term=GO:0005524,GO:0031419;gbkey=CDS;gene=btuF;go_function=ATP binding|0005524||IEA,cobalamin binding|0031419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459211.1;locus_tag=C9E96_RS23260;product=vitamin B12 ABC transporter substrate-binding protein BtuF;protein_id=WP_001118838.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	4303	4926	.	+	.	ID=gene-C9E96_RS23265;Name=C9E96_RS23265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23265;old_locus_tag=C9E96_23850
NZ_PYJX01000246.1	Protein Homology	CDS	4303	4926	.	+	0	ID=cds-WP_000964234.1;Parent=gene-C9E96_RS23265;Dbxref=GenBank:WP_000964234.1;Name=WP_000964234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459210.1;locus_tag=C9E96_RS23265;product=TRIC cation channel family protein;protein_id=WP_000964234.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	5027	5371	.	-	.	ID=gene-C9E96_RS23270;Name=erpA;gbkey=Gene;gene=erpA;gene_biotype=protein_coding;locus_tag=C9E96_RS23270;old_locus_tag=C9E96_23855
NZ_PYJX01000246.1	Protein Homology	CDS	5027	5371	.	-	0	ID=cds-WP_001278668.1;Parent=gene-C9E96_RS23270;Dbxref=GenBank:WP_001278668.1;Name=WP_001278668.1;Ontology_term=GO:0016226,GO:0051536;gbkey=CDS;gene=erpA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001295564.1;locus_tag=C9E96_RS23270;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_001278668.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	5453	6874	.	-	.	ID=gene-C9E96_RS23275;Name=clcA;gbkey=Gene;gene=clcA;gene_biotype=protein_coding;locus_tag=C9E96_RS23275;old_locus_tag=C9E96_23860
NZ_PYJX01000246.1	Protein Homology	CDS	5453	6874	.	-	0	ID=cds-WP_000845426.1;Parent=gene-C9E96_RS23275;Dbxref=GenBank:WP_000845426.1;Name=WP_000845426.1;Ontology_term=GO:0006821,GO:0055085,GO:0005247,GO:0005886;gbkey=CDS;gene=clcA;go_component=plasma membrane|0005886||IEA;go_function=voltage-gated chloride channel activity|0005247||IEA;go_process=chloride transport|0006821||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459208.1;locus_tag=C9E96_RS23275;product=H(+)/Cl(-) exchange transporter ClcA;protein_id=WP_000845426.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	7044	8324	.	+	.	ID=gene-C9E96_RS23280;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=C9E96_RS23280;old_locus_tag=C9E96_23865
NZ_PYJX01000246.1	Protein Homology	CDS	7044	8324	.	+	0	ID=cds-WP_000045248.1;Parent=gene-C9E96_RS23280;Dbxref=GenBank:WP_000045248.1;Name=WP_000045248.1;Ontology_term=GO:0033014,GO:0042286;gbkey=CDS;gene=hemL;go_function=glutamate-1-semialdehyde 2%2C1-aminomutase activity|0042286||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233394.1;locus_tag=C9E96_RS23280;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_000045248.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	8432	9271	.	-	.	ID=gene-C9E96_RS23285;Name=stfH;gbkey=Gene;gene=stfH;gene_biotype=protein_coding;locus_tag=C9E96_RS23285;old_locus_tag=C9E96_23870
NZ_PYJX01000246.1	Protein Homology	CDS	8432	9271	.	-	0	ID=cds-WP_001669135.1;Parent=gene-C9E96_RS23285;Dbxref=GenBank:WP_001669135.1;Name=WP_001669135.1;gbkey=CDS;gene=stfH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459206.1;locus_tag=C9E96_RS23285;product=fimbrial adhesin StfH;protein_id=WP_001669135.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	9271	9801	.	-	.	ID=gene-C9E96_RS23290;Name=C9E96_RS23290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23290;old_locus_tag=C9E96_23875
NZ_PYJX01000246.1	Protein Homology	CDS	9271	9801	.	-	0	ID=cds-WP_080203740.1;Parent=gene-C9E96_RS23290;Dbxref=GenBank:WP_080203740.1;Name=WP_080203740.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459205.1;locus_tag=C9E96_RS23290;product=fimbrial protein;protein_id=WP_080203740.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	9801	10277	.	-	.	ID=gene-C9E96_RS23295;Name=stfF;gbkey=Gene;gene=stfF;gene_biotype=protein_coding;locus_tag=C9E96_RS23295;old_locus_tag=C9E96_23880
NZ_PYJX01000246.1	Protein Homology	CDS	9801	10277	.	-	0	ID=cds-WP_023244813.1;Parent=gene-C9E96_RS23295;Dbxref=GenBank:WP_023244813.1;Name=WP_023244813.1;gbkey=CDS;gene=stfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459204.1;locus_tag=C9E96_RS23295;product=fimbrial minor subunit StfF;protein_id=WP_023244813.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	10274	10786	.	-	.	ID=gene-C9E96_RS23300;Name=C9E96_RS23300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23300;old_locus_tag=C9E96_23885
NZ_PYJX01000246.1	Protein Homology	CDS	10274	10786	.	-	0	ID=cds-WP_001250313.1;Parent=gene-C9E96_RS23300;Dbxref=GenBank:WP_001250313.1;Name=WP_001250313.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459203.1;locus_tag=C9E96_RS23300;product=fimbrial protein;protein_id=WP_001250313.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	pseudogene	10805	11557	.	-	.	ID=gene-C9E96_RS23305;Name=stfD;gbkey=Gene;gene=stfD;gene_biotype=pseudogene;locus_tag=C9E96_RS23305;old_locus_tag=C9E96_23890;pseudo=true
NZ_PYJX01000246.1	Protein Homology	CDS	10805	11557	.	-	0	ID=cds-C9E96_RS23305;Parent=gene-C9E96_RS23305;Note=internal stop;gbkey=CDS;gene=stfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459202.1;locus_tag=C9E96_RS23305;product=fimbrial chaperone StfD;pseudo=true;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	11575	14232	.	-	.	ID=gene-C9E96_RS23310;Name=C9E96_RS23310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23310;old_locus_tag=C9E96_23895
NZ_PYJX01000246.1	Protein Homology	CDS	11575	14232	.	-	0	ID=cds-WP_135494753.1;Parent=gene-C9E96_RS23310;Dbxref=GenBank:WP_135494753.1;Name=WP_135494753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459201.1;locus_tag=C9E96_RS23310;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_135494753.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	14318	14878	.	-	.	ID=gene-C9E96_RS23315;Name=stfA;gbkey=Gene;gene=stfA;gene_biotype=protein_coding;locus_tag=C9E96_RS23315;old_locus_tag=C9E96_23900
NZ_PYJX01000246.1	Protein Homology	CDS	14318	14878	.	-	0	ID=cds-WP_001090553.1;Parent=gene-C9E96_RS23315;Dbxref=GenBank:WP_001090553.1;Name=WP_001090553.1;gbkey=CDS;gene=stfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459200.1;locus_tag=C9E96_RS23315;product=fimbrial major subunit StfA;protein_id=WP_001090553.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	15819	17858	.	-	.	ID=gene-C9E96_RS23325;Name=fhuB;gbkey=Gene;gene=fhuB;gene_biotype=protein_coding;locus_tag=C9E96_RS23325;old_locus_tag=C9E96_23910
NZ_PYJX01000246.1	Protein Homology	CDS	15819	17858	.	-	0	ID=cds-WP_131040942.1;Parent=gene-C9E96_RS23325;Dbxref=GenBank:WP_131040942.1;Name=WP_131040942.1;Ontology_term=GO:0022857;gbkey=CDS;gene=fhuB;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016504759.1;locus_tag=C9E96_RS23325;product=Fe(3+)-hydroxamate ABC transporter permease FhuB;protein_id=WP_131040942.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	17873	18763	.	-	.	ID=gene-C9E96_RS23330;Name=fhuD;gbkey=Gene;gene=fhuD;gene_biotype=protein_coding;locus_tag=C9E96_RS23330;old_locus_tag=C9E96_23915
NZ_PYJX01000246.1	Protein Homology	CDS	17873	18763	.	-	0	ID=cds-WP_079968219.1;Parent=gene-C9E96_RS23330;Dbxref=GenBank:WP_079968219.1;Name=WP_079968219.1;gbkey=CDS;gene=fhuD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459198.1;locus_tag=C9E96_RS23330;product=Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD;protein_id=WP_079968219.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	18763	19569	.	-	.	ID=gene-C9E96_RS23335;Name=fhuC;gbkey=Gene;gene=fhuC;gene_biotype=protein_coding;locus_tag=C9E96_RS23335;old_locus_tag=C9E96_23920
NZ_PYJX01000246.1	Protein Homology	CDS	18763	19569	.	-	0	ID=cds-WP_135494756.1;Parent=gene-C9E96_RS23335;Dbxref=GenBank:WP_135494756.1;Name=WP_135494756.1;Ontology_term=GO:0005524;gbkey=CDS;gene=fhuC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459197.1;locus_tag=C9E96_RS23335;product=Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;protein_id=WP_135494756.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	19609	21798	.	-	.	ID=gene-C9E96_RS23340;Name=fhuA;gbkey=Gene;gene=fhuA;gene_biotype=protein_coding;locus_tag=C9E96_RS23340;old_locus_tag=C9E96_23925
NZ_PYJX01000246.1	Protein Homology	CDS	19609	21798	.	-	0	ID=cds-WP_079821180.1;Parent=gene-C9E96_RS23340;Dbxref=GenBank:WP_079821180.1;Name=WP_079821180.1;Ontology_term=GO:0015891,GO:0015344,GO:0038023,GO:0009279;gbkey=CDS;gene=fhuA;go_component=cell outer membrane|0009279||IEA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459196.1;locus_tag=C9E96_RS23340;product=ferrichrome porin FhuA;protein_id=WP_079821180.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	22091	24613	.	-	.	ID=gene-C9E96_RS23345;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;locus_tag=C9E96_RS23345;old_locus_tag=C9E96_23930
NZ_PYJX01000246.1	Protein Homology	CDS	22091	24613	.	-	0	ID=cds-WP_080203743.1;Parent=gene-C9E96_RS23345;Dbxref=GenBank:WP_080203743.1;Name=WP_080203743.1;Ontology_term=GO:0009252,GO:0046677,GO:0008658,GO:0008955,GO:0009274;gbkey=CDS;gene=mrcB;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459195.1;locus_tag=C9E96_RS23345;product=bifunctional glycosyl transferase/transpeptidase;protein_id=WP_080203743.1;transl_table=11
NZ_PYJX01000246.1	RefSeq	gene	24754	26153	.	-	.	ID=gene-C9E96_RS23350;Name=hrpB;end_range=26153,.;gbkey=Gene;gene=hrpB;gene_biotype=protein_coding;locus_tag=C9E96_RS23350;old_locus_tag=C9E96_23935;partial=true
NZ_PYJX01000246.1	Protein Homology	CDS	24754	26153	.	-	2	ID=cds-WP_135494759.1;Parent=gene-C9E96_RS23350;Dbxref=GenBank:WP_135494759.1;Name=WP_135494759.1;Ontology_term=GO:0004386;end_range=26153,.;gbkey=CDS;gene=hrpB;go_function=helicase activity|0004386||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414690.4;locus_tag=C9E96_RS23350;partial=true;product=ATP-dependent helicase HrpB;protein_id=WP_135494759.1;transl_table=11
##sequence-region NZ_PYJX01000172.1 1 26131
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000172.1	RefSeq	region	1	26131	.	+	.	ID=NZ_PYJX01000172.1:1..26131;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000172.1	RefSeq	gene	1	1804	.	-	.	ID=gene-C9E96_RS16280;Name=nirB;gbkey=Gene;gene=nirB;gene_biotype=protein_coding;locus_tag=C9E96_RS16280;old_locus_tag=C9E96_16680;partial=true;start_range=.,1
NZ_PYJX01000172.1	Protein Homology	CDS	1	1804	.	-	0	ID=cds-WP_135494399.1;Parent=gene-C9E96_RS16280;Dbxref=GenBank:WP_135494399.1;Name=WP_135494399.1;gbkey=CDS;gene=nirB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462377.1;locus_tag=C9E96_RS16280;partial=true;product=NADPH-nitrite reductase large subunit;protein_id=WP_135494399.1;start_range=.,1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	2122	3303	.	-	.	ID=gene-C9E96_RS16285;Name=tsgA;gbkey=Gene;gene=tsgA;gene_biotype=protein_coding;locus_tag=C9E96_RS16285;old_locus_tag=C9E96_16685
NZ_PYJX01000172.1	Protein Homology	CDS	2122	3303	.	-	0	ID=cds-WP_000185211.1;Parent=gene-C9E96_RS16285;Dbxref=GenBank:WP_000185211.1;Name=WP_000185211.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=tsgA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462376.1;locus_tag=C9E96_RS16285;product=MFS transporter TsgA;protein_id=WP_000185211.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	3581	4153	.	+	.	ID=gene-C9E96_RS16290;Name=ppiA;gbkey=Gene;gene=ppiA;gene_biotype=protein_coding;gene_synonym=rotA;locus_tag=C9E96_RS16290;old_locus_tag=C9E96_16690
NZ_PYJX01000172.1	Protein Homology	CDS	3581	4153	.	+	0	ID=cds-WP_000920481.1;Parent=gene-C9E96_RS16290;Dbxref=GenBank:WP_000920481.1;Name=WP_000920481.1;gbkey=CDS;gene=ppiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462375.1;locus_tag=C9E96_RS16290;product=peptidylprolyl isomerase A;protein_id=WP_000920481.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	4262	4429	.	+	.	ID=gene-C9E96_RS16295;Name=C9E96_RS16295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16295;old_locus_tag=C9E96_16695
NZ_PYJX01000172.1	Protein Homology	CDS	4262	4429	.	+	0	ID=cds-WP_001620545.1;Parent=gene-C9E96_RS16295;Dbxref=GenBank:WP_001620545.1;Name=WP_001620545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462374.1;locus_tag=C9E96_RS16295;product=YhfG family protein;protein_id=WP_001620545.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	4419	5021	.	+	.	ID=gene-C9E96_RS16300;Name=C9E96_RS16300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16300;old_locus_tag=C9E96_16700
NZ_PYJX01000172.1	Protein Homology	CDS	4419	5021	.	+	0	ID=cds-WP_080204112.1;Parent=gene-C9E96_RS16300;Dbxref=GenBank:WP_080204112.1;Name=WP_080204112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462373.1;locus_tag=C9E96_RS16300;product=putative adenosine monophosphate-protein transferase Fic;protein_id=WP_080204112.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	5053	5616	.	+	.	ID=gene-C9E96_RS16305;Name=pabA;gbkey=Gene;gene=pabA;gene_biotype=protein_coding;locus_tag=C9E96_RS16305;old_locus_tag=C9E96_16705
NZ_PYJX01000172.1	Protein Homology	CDS	5053	5616	.	+	0	ID=cds-WP_080204113.1;Parent=gene-C9E96_RS16305;Dbxref=GenBank:WP_080204113.1;Name=WP_080204113.1;gbkey=CDS;gene=pabA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462372.1;locus_tag=C9E96_RS16305;product=aminodeoxychorismate synthase component 2;protein_id=WP_080204113.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	5702	6919	.	+	.	ID=gene-C9E96_RS16310;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;gene_synonym=dapC;locus_tag=C9E96_RS16310;old_locus_tag=C9E96_16710
NZ_PYJX01000172.1	Protein Homology	CDS	5702	6919	.	+	0	ID=cds-WP_080204114.1;Parent=gene-C9E96_RS16310;Dbxref=GenBank:WP_080204114.1;Name=WP_080204114.1;gbkey=CDS;gene=argD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462371.1;locus_tag=C9E96_RS16310;product=bifunctional acetylornithine/succinyldiaminopimelate transaminase;protein_id=WP_080204114.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	6962	9049	.	-	.	ID=gene-C9E96_RS16315;Name=C9E96_RS16315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16315;old_locus_tag=C9E96_16715
NZ_PYJX01000172.1	Protein Homology	CDS	6962	9049	.	-	0	ID=cds-WP_000269311.1;Parent=gene-C9E96_RS16315;Dbxref=GenBank:WP_000269311.1;Name=WP_000269311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462370.1;locus_tag=C9E96_RS16315;product=YccS/YhfK family putative transporter;protein_id=WP_000269311.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	9098	9730	.	-	.	ID=gene-C9E96_RS16320;Name=crp;gbkey=Gene;gene=crp;gene_biotype=protein_coding;locus_tag=C9E96_RS16320;old_locus_tag=C9E96_16720
NZ_PYJX01000172.1	Protein Homology	CDS	9098	9730	.	-	0	ID=cds-WP_000242758.1;Parent=gene-C9E96_RS16320;Dbxref=GenBank:WP_000242758.1;Name=WP_000242758.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=crp;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506431.1;locus_tag=C9E96_RS16320;product=cAMP-activated global transcriptional regulator CRP;protein_id=WP_000242758.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	10038	10442	.	+	.	ID=gene-C9E96_RS16325;Name=C9E96_RS16325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16325;old_locus_tag=C9E96_16725
NZ_PYJX01000172.1	Protein Homology	CDS	10038	10442	.	+	0	ID=cds-WP_001148919.1;Parent=gene-C9E96_RS16325;Dbxref=GenBank:WP_001148919.1;Name=WP_001148919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462368.1;locus_tag=C9E96_RS16325;product=OsmC family protein;protein_id=WP_001148919.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	10538	11407	.	-	.	ID=gene-C9E96_RS16330;Name=C9E96_RS16330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16330;old_locus_tag=C9E96_16730
NZ_PYJX01000172.1	Protein Homology	CDS	10538	11407	.	-	0	ID=cds-WP_001274690.1;Parent=gene-C9E96_RS16330;Dbxref=GenBank:WP_001274690.1;Name=WP_001274690.1;Ontology_term=GO:0005975,GO:0005524,GO:0008974;gbkey=CDS;go_function=ATP binding|0005524||IEA,phosphoribulokinase activity|0008974||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462367.1;locus_tag=C9E96_RS16330;product=phosphoribulokinase;protein_id=WP_001274690.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	11459	11677	.	-	.	ID=gene-C9E96_RS16335;Name=C9E96_RS16335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16335;old_locus_tag=C9E96_16735
NZ_PYJX01000172.1	Protein Homology	CDS	11459	11677	.	-	0	ID=cds-WP_000586568.1;Parent=gene-C9E96_RS16335;Dbxref=GenBank:WP_000586568.1;Name=WP_000586568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312232.1;locus_tag=C9E96_RS16335;product=YheU family protein;protein_id=WP_000586568.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	11674	12741	.	-	.	ID=gene-C9E96_RS16340;Name=C9E96_RS16340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16340;old_locus_tag=C9E96_16740
NZ_PYJX01000172.1	Protein Homology	CDS	11674	12741	.	-	0	ID=cds-WP_001214115.1;Parent=gene-C9E96_RS16340;Dbxref=GenBank:WP_001214115.1;Name=WP_001214115.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462365.1;locus_tag=C9E96_RS16340;product=hydrolase;protein_id=WP_001214115.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	12939	13250	.	+	.	ID=gene-C9E96_RS16350;Name=C9E96_RS16350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16350;old_locus_tag=C9E96_16745
NZ_PYJX01000172.1	Protein Homology	CDS	12939	13250	.	+	0	ID=cds-WP_000047689.1;Parent=gene-C9E96_RS16350;Dbxref=GenBank:WP_000047689.1;Name=WP_000047689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462364.1;locus_tag=C9E96_RS16350;product=monooxygenase;protein_id=WP_000047689.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	13252	13473	.	-	.	ID=gene-C9E96_RS16355;Name=C9E96_RS16355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16355;old_locus_tag=C9E96_16750
NZ_PYJX01000172.1	Protein Homology	CDS	13252	13473	.	-	0	ID=cds-WP_023993560.1;Parent=gene-C9E96_RS16355;Dbxref=GenBank:WP_023993560.1;Name=WP_023993560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001054026.1;locus_tag=C9E96_RS16355;product=LysR family transcriptional regulator;protein_id=WP_023993560.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	13636	15543	.	-	.	ID=gene-C9E96_RS16360;Name=C9E96_RS16360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16360;old_locus_tag=C9E96_16760
NZ_PYJX01000172.1	Protein Homology	CDS	13636	15543	.	-	0	ID=cds-WP_080204115.1;Parent=gene-C9E96_RS16360;Dbxref=GenBank:WP_080204115.1;Name=WP_080204115.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462363.1;locus_tag=C9E96_RS16360;product=ABC transporter ATP-binding protein;protein_id=WP_080204115.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	15809	16360	.	+	.	ID=gene-C9E96_RS16365;Name=kefG;gbkey=Gene;gene=kefG;gene_biotype=protein_coding;locus_tag=C9E96_RS16365;old_locus_tag=C9E96_16765
NZ_PYJX01000172.1	Protein Homology	CDS	15809	16360	.	+	0	ID=cds-WP_080204116.1;Parent=gene-C9E96_RS16365;Dbxref=GenBank:WP_080204116.1;Name=WP_080204116.1;Ontology_term=GO:0006813;gbkey=CDS;gene=kefG;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462362.1;locus_tag=C9E96_RS16365;product=glutathione-regulated potassium-efflux system ancillary protein KefG;protein_id=WP_080204116.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	16360	18165	.	+	.	ID=gene-C9E96_RS16370;Name=kefB;gbkey=Gene;gene=kefB;gene_biotype=protein_coding;locus_tag=C9E96_RS16370;old_locus_tag=C9E96_16770
NZ_PYJX01000172.1	Protein Homology	CDS	16360	18165	.	+	0	ID=cds-WP_135494401.1;Parent=gene-C9E96_RS16370;Dbxref=GenBank:WP_135494401.1;Name=WP_135494401.1;Ontology_term=GO:0006813,GO:0015503;gbkey=CDS;gene=kefB;go_function=glutathione-regulated potassium exporter activity|0015503||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462361.1;locus_tag=C9E96_RS16370;product=glutathione-regulated potassium-efflux system protein KefB;protein_id=WP_135494401.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	18176	18376	.	+	.	ID=gene-C9E96_RS16375;Name=C9E96_RS16375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16375;old_locus_tag=C9E96_16775
NZ_PYJX01000172.1	Protein Homology	CDS	18176	18376	.	+	0	ID=cds-WP_001007735.1;Parent=gene-C9E96_RS16375;Dbxref=GenBank:WP_001007735.1;Name=WP_001007735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462360.1;locus_tag=C9E96_RS16375;product=YheV family putative zinc ribbon protein;protein_id=WP_001007735.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	18471	19061	.	+	.	ID=gene-C9E96_RS16380;Name=slyD;gbkey=Gene;gene=slyD;gene_biotype=protein_coding;locus_tag=C9E96_RS16380;old_locus_tag=C9E96_16780
NZ_PYJX01000172.1	Protein Homology	CDS	18471	19061	.	+	0	ID=cds-WP_000861341.1;Parent=gene-C9E96_RS16380;Dbxref=GenBank:WP_000861341.1;Name=WP_000861341.1;Ontology_term=GO:0003755;gbkey=CDS;gene=slyD;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462359.1;locus_tag=C9E96_RS16380;product=peptidylprolyl isomerase;protein_id=WP_000861341.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	19255	19473	.	-	.	ID=gene-C9E96_RS16385;Name=C9E96_RS16385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16385;old_locus_tag=C9E96_16785
NZ_PYJX01000172.1	Protein Homology	CDS	19255	19473	.	-	0	ID=cds-WP_001152701.1;Parent=gene-C9E96_RS16385;Dbxref=GenBank:WP_001152701.1;Name=WP_001152701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462358.1;locus_tag=C9E96_RS16385;product=protein SlyX;protein_id=WP_001152701.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	19693	20511	.	+	.	ID=gene-C9E96_RS16390;Name=fkpA;gbkey=Gene;gene=fkpA;gene_biotype=protein_coding;locus_tag=C9E96_RS16390;old_locus_tag=C9E96_16790
NZ_PYJX01000172.1	Protein Homology	CDS	19693	20511	.	+	0	ID=cds-WP_000838225.1;Parent=gene-C9E96_RS16390;Dbxref=GenBank:WP_000838225.1;Name=WP_000838225.1;Ontology_term=GO:0006457,GO:0003755;gbkey=CDS;gene=fkpA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462357.1;locus_tag=C9E96_RS16390;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000838225.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	20788	21510	.	+	.	ID=gene-C9E96_RS16395;Name=C9E96_RS16395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16395;old_locus_tag=C9E96_16795
NZ_PYJX01000172.1	Protein Homology	CDS	20788	21510	.	+	0	ID=cds-WP_000091471.1;Parent=gene-C9E96_RS16395;Dbxref=GenBank:WP_000091471.1;Name=WP_000091471.1;Ontology_term=GO:0006355,GO:0007165,GO:0003677,GO:0003700,GO:0005515,GO:0140110;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,protein binding|0005515||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462356.1;locus_tag=C9E96_RS16395;product=helix-turn-helix transcriptional regulator;protein_id=WP_000091471.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	21510	21896	.	+	.	ID=gene-C9E96_RS16400;Name=tusD;gbkey=Gene;gene=tusD;gene_biotype=protein_coding;locus_tag=C9E96_RS16400;old_locus_tag=C9E96_16800
NZ_PYJX01000172.1	Protein Homology	CDS	21510	21896	.	+	0	ID=cds-WP_001268012.1;Parent=gene-C9E96_RS16400;Dbxref=GenBank:WP_001268012.1;Name=WP_001268012.1;Ontology_term=GO:0008033,GO:0016783;gbkey=CDS;gene=tusD;go_function=sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462355.1;locus_tag=C9E96_RS16400;product=sulfurtransferase complex subunit TusD;protein_id=WP_001268012.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	21896	22252	.	+	.	ID=gene-C9E96_RS16405;Name=tusC;gbkey=Gene;gene=tusC;gene_biotype=protein_coding;locus_tag=C9E96_RS16405;old_locus_tag=C9E96_16805
NZ_PYJX01000172.1	Protein Homology	CDS	21896	22252	.	+	0	ID=cds-WP_000820705.1;Parent=gene-C9E96_RS16405;Dbxref=GenBank:WP_000820705.1;Name=WP_000820705.1;gbkey=CDS;gene=tusC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462354.1;locus_tag=C9E96_RS16405;product=sulfurtransferase complex subunit TusC;protein_id=WP_000820705.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	22260	22547	.	+	.	ID=gene-C9E96_RS16410;Name=tusB;gbkey=Gene;gene=tusB;gene_biotype=protein_coding;locus_tag=C9E96_RS16410;old_locus_tag=C9E96_16810
NZ_PYJX01000172.1	Protein Homology	CDS	22260	22547	.	+	0	ID=cds-WP_000903400.1;Parent=gene-C9E96_RS16410;Dbxref=GenBank:WP_000903400.1;Name=WP_000903400.1;Ontology_term=GO:0002143;gbkey=CDS;gene=tusB;go_process=tRNA wobble position uridine thiolation|0002143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462353.1;locus_tag=C9E96_RS16410;product=sulfurtransferase complex subunit TusB;protein_id=WP_000903400.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	22673	23047	.	+	.	ID=gene-C9E96_RS16415;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=C9E96_RS16415;old_locus_tag=C9E96_16815
NZ_PYJX01000172.1	Protein Homology	CDS	22673	23047	.	+	0	ID=cds-WP_000246815.1;Parent=gene-C9E96_RS16415;Dbxref=GenBank:WP_000246815.1;Name=WP_000246815.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsL;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005306278.1;locus_tag=C9E96_RS16415;product=30S ribosomal protein S12;protein_id=WP_000246815.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	23143	23613	.	+	.	ID=gene-C9E96_RS16420;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=C9E96_RS16420;old_locus_tag=C9E96_16820
NZ_PYJX01000172.1	Protein Homology	CDS	23143	23613	.	+	0	ID=cds-WP_001138042.1;Parent=gene-C9E96_RS16420;Dbxref=GenBank:WP_001138042.1;Name=WP_001138042.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsG;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742319.1;locus_tag=C9E96_RS16420;product=30S ribosomal protein S7;protein_id=WP_001138042.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	23710	25824	.	+	.	ID=gene-C9E96_RS16425;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=C9E96_RS16425;old_locus_tag=C9E96_16825
NZ_PYJX01000172.1	Protein Homology	CDS	23710	25824	.	+	0	ID=cds-WP_000124693.1;Parent=gene-C9E96_RS16425;Dbxref=GenBank:WP_000124693.1;Name=WP_000124693.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020455498.1;locus_tag=C9E96_RS16425;product=elongation factor G;protein_id=WP_000124693.1;transl_table=11
NZ_PYJX01000172.1	RefSeq	gene	25896	26131	.	+	.	ID=gene-C9E96_RS16430;Name=C9E96_RS16430;end_range=26131,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16430;old_locus_tag=C9E96_16830;partial=true
NZ_PYJX01000172.1	Protein Homology	CDS	25896	26131	.	+	0	ID=cds-WP_000031667.1-2;Parent=gene-C9E96_RS16430;Dbxref=GenBank:WP_000031667.1;Name=WP_000031667.1;Ontology_term=GO:0003924,GO:0005525;end_range=26131,.;gbkey=CDS;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=C9E96_RS16430;partial=true;product=GTP-binding protein;protein_id=WP_000031667.1;transl_table=11
##sequence-region NZ_PYJX01000144.1 1 25681
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000144.1	RefSeq	region	1	25681	.	+	.	ID=NZ_PYJX01000144.1:1..25681;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000144.1	RefSeq	pseudogene	1	244	.	+	.	ID=gene-C9E96_RS12780;Name=ddl;gbkey=Gene;gene=ddl;gene_biotype=pseudogene;locus_tag=C9E96_RS12780;old_locus_tag=C9E96_13090;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000144.1	Protein Homology	CDS	1	244	.	+	1	ID=cds-C9E96_RS12780;Parent=gene-C9E96_RS12780;Note=D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli%3B internal stop%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=ddl;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459135.1;locus_tag=C9E96_RS12780;partial=true;product=D-alanine--D-alanine ligase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	246	1076	.	+	.	ID=gene-C9E96_RS12785;Name=ftsQ;gbkey=Gene;gene=ftsQ;gene_biotype=protein_coding;locus_tag=C9E96_RS12785;old_locus_tag=C9E96_13095
NZ_PYJX01000144.1	Protein Homology	CDS	246	1076	.	+	0	ID=cds-WP_000075728.1;Parent=gene-C9E96_RS12785;Dbxref=GenBank:WP_000075728.1;Name=WP_000075728.1;Ontology_term=GO:0090529;gbkey=CDS;gene=ftsQ;go_process=cell septum assembly|0090529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459136.1;locus_tag=C9E96_RS12785;product=cell division protein FtsQ;protein_id=WP_000075728.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	1073	2335	.	+	.	ID=gene-C9E96_RS12790;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=C9E96_RS12790;old_locus_tag=C9E96_13100
NZ_PYJX01000144.1	Protein Homology	CDS	1073	2335	.	+	0	ID=cds-WP_000588463.1;Parent=gene-C9E96_RS12790;Dbxref=GenBank:WP_000588463.1;Name=WP_000588463.1;Ontology_term=GO:0051301,GO:0005515;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459137.1;locus_tag=C9E96_RS12790;product=cell division protein FtsA;protein_id=WP_000588463.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	2396	3547	.	+	.	ID=gene-C9E96_RS12795;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=C9E96_RS12795;old_locus_tag=C9E96_13105
NZ_PYJX01000144.1	Protein Homology	CDS	2396	3547	.	+	0	ID=cds-WP_000462785.1;Parent=gene-C9E96_RS12795;Dbxref=GenBank:WP_000462785.1;Name=WP_000462785.1;Ontology_term=GO:0000910,GO:0003924,GO:0005525;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965916.1;locus_tag=C9E96_RS12795;product=cell division protein FtsZ;protein_id=WP_000462785.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	3648	4565	.	+	.	ID=gene-C9E96_RS12800;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=C9E96_RS12800;old_locus_tag=C9E96_13110
NZ_PYJX01000144.1	Protein Homology	CDS	3648	4565	.	+	0	ID=cds-WP_000595487.1;Parent=gene-C9E96_RS12800;Dbxref=GenBank:WP_000595487.1;Name=WP_000595487.1;Ontology_term=GO:0009245,GO:0103117;gbkey=CDS;gene=lpxC;go_function=UDP-3-O-acyl-N-acetylglucosamine deacetylase activity|0103117||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459139.1;locus_tag=C9E96_RS12800;product=UDP-3-O-acyl-N-acetylglucosamine deacetylase;protein_id=WP_000595487.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	4843	5340	.	+	.	ID=gene-C9E96_RS12805;Name=secM;gbkey=Gene;gene=secM;gene_biotype=protein_coding;locus_tag=C9E96_RS12805;old_locus_tag=C9E96_13115
NZ_PYJX01000144.1	Protein Homology	CDS	4843	5340	.	+	0	ID=cds-WP_000014336.1;Parent=gene-C9E96_RS12805;Dbxref=GenBank:WP_000014336.1;Name=WP_000014336.1;Ontology_term=GO:0045182;gbkey=CDS;gene=secM;go_function=translation regulator activity|0045182||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308128.2;locus_tag=C9E96_RS12805;product=secA translation cis-regulator SecM;protein_id=WP_000014336.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	5402	8107	.	+	.	ID=gene-C9E96_RS12810;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=C9E96_RS12810;old_locus_tag=C9E96_13120
NZ_PYJX01000144.1	Protein Homology	CDS	5402	8107	.	+	0	ID=cds-WP_000905756.1;Parent=gene-C9E96_RS12810;Dbxref=GenBank:WP_000905756.1;Name=WP_000905756.1;Ontology_term=GO:0006605,GO:0006886,GO:0017038,GO:0005524;gbkey=CDS;gene=secA;go_function=ATP binding|0005524||IEA;go_process=protein targeting|0006605||IEA,intracellular protein transport|0006886||IEA,protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459141.1;locus_tag=C9E96_RS12810;product=preprotein translocase subunit SecA;protein_id=WP_000905756.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	8259	8654	.	+	.	ID=gene-C9E96_RS12815;Name=mutT;gbkey=Gene;gene=mutT;gene_biotype=protein_coding;locus_tag=C9E96_RS12815;old_locus_tag=C9E96_13125
NZ_PYJX01000144.1	Protein Homology	CDS	8259	8654	.	+	0	ID=cds-WP_135494269.1;Parent=gene-C9E96_RS12815;Dbxref=GenBank:WP_135494269.1;Name=WP_135494269.1;Ontology_term=GO:0006281,GO:0008413;gbkey=CDS;gene=mutT;go_function=8-oxo-7%2C8-dihydroguanosine triphosphate pyrophosphatase activity|0008413||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000736059.1;locus_tag=C9E96_RS12815;product=8-oxo-dGTP diphosphatase MutT;protein_id=WP_135494269.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	8688	9677	.	-	.	ID=gene-C9E96_RS12820;Name=C9E96_RS12820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12820;old_locus_tag=C9E96_13130
NZ_PYJX01000144.1	Protein Homology	CDS	8688	9677	.	-	0	ID=cds-WP_001200034.1;Parent=gene-C9E96_RS12820;Dbxref=GenBank:WP_001200034.1;Name=WP_001200034.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001200034.1;locus_tag=C9E96_RS12820;product=aldo/keto reductase;protein_id=WP_001200034.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	9763	10704	.	+	.	ID=gene-C9E96_RS12825;Name=C9E96_RS12825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12825;old_locus_tag=C9E96_13135
NZ_PYJX01000144.1	Protein Homology	CDS	9763	10704	.	+	0	ID=cds-WP_045341765.1;Parent=gene-C9E96_RS12825;Dbxref=GenBank:WP_045341765.1;Name=WP_045341765.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001697068.1;locus_tag=C9E96_RS12825;product=LysR family transcriptional regulator;protein_id=WP_045341765.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	10701	10892	.	-	.	ID=gene-C9E96_RS12830;Name=yacG;gbkey=Gene;gene=yacG;gene_biotype=protein_coding;locus_tag=C9E96_RS12830;old_locus_tag=C9E96_13140
NZ_PYJX01000144.1	Protein Homology	CDS	10701	10892	.	-	0	ID=cds-WP_001286419.1;Parent=gene-C9E96_RS12830;Dbxref=GenBank:WP_001286419.1;Name=WP_001286419.1;Ontology_term=GO:0006355,GO:0008270;gbkey=CDS;gene=yacG;go_function=zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459143.1;locus_tag=C9E96_RS12830;product=DNA gyrase inhibitor YacG;protein_id=WP_001286419.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	10902	11645	.	-	.	ID=gene-C9E96_RS12835;Name=zapD;gbkey=Gene;gene=zapD;gene_biotype=protein_coding;locus_tag=C9E96_RS12835;old_locus_tag=C9E96_13145
NZ_PYJX01000144.1	Protein Homology	CDS	10902	11645	.	-	0	ID=cds-WP_000557441.1;Parent=gene-C9E96_RS12835;Dbxref=GenBank:WP_000557441.1;Name=WP_000557441.1;gbkey=CDS;gene=zapD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459144.1;locus_tag=C9E96_RS12835;product=cell division protein ZapD;protein_id=WP_000557441.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	11645	12265	.	-	.	ID=gene-C9E96_RS12840;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=C9E96_RS12840;old_locus_tag=C9E96_13150
NZ_PYJX01000144.1	Protein Homology	CDS	11645	12265	.	-	0	ID=cds-WP_080203756.1;Parent=gene-C9E96_RS12840;Dbxref=GenBank:WP_080203756.1;Name=WP_080203756.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005524,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA,ATP binding|0005524||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459145.1;locus_tag=C9E96_RS12840;product=dephospho-CoA kinase;protein_id=WP_080203756.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	12491	13534	.	+	.	ID=gene-C9E96_RS12845;Name=C9E96_RS12845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12845;old_locus_tag=C9E96_13155
NZ_PYJX01000144.1	Protein Homology	CDS	12491	13534	.	+	0	ID=cds-WP_001217365.1;Parent=gene-C9E96_RS12845;Dbxref=GenBank:WP_001217365.1;Name=WP_001217365.1;Ontology_term=GO:0009117,GO:0003920;gbkey=CDS;go_function=GMP reductase activity|0003920||IEA;go_process=nucleotide metabolic process|0009117||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461816.1;locus_tag=C9E96_RS12845;product=GMP reductase;protein_id=WP_001217365.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	13565	14767	.	-	.	ID=gene-C9E96_RS12850;Name=hofC;gbkey=Gene;gene=hofC;gene_biotype=protein_coding;locus_tag=C9E96_RS12850;old_locus_tag=C9E96_13160
NZ_PYJX01000144.1	Protein Homology	CDS	13565	14767	.	-	0	ID=cds-WP_080203755.1;Parent=gene-C9E96_RS12850;Dbxref=GenBank:WP_080203755.1;Name=WP_080203755.1;Ontology_term=GO:0004827;gbkey=CDS;gene=hofC;go_function=proline-tRNA ligase activity|0004827||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459147.1;locus_tag=C9E96_RS12850;product=protein transport protein HofC;protein_id=WP_080203755.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	14757	16142	.	-	.	ID=gene-C9E96_RS12855;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=C9E96_RS12855;old_locus_tag=C9E96_13165
NZ_PYJX01000144.1	Protein Homology	CDS	14757	16142	.	-	0	ID=cds-WP_080203754.1;Parent=gene-C9E96_RS12855;Dbxref=GenBank:WP_080203754.1;Name=WP_080203754.1;gbkey=CDS;gene=gspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459148.1;locus_tag=C9E96_RS12855;product=type II secretion system protein GspE;protein_id=WP_080203754.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	16152	16589	.	-	.	ID=gene-C9E96_RS12860;Name=ppdD;gbkey=Gene;gene=ppdD;gene_biotype=protein_coding;locus_tag=C9E96_RS12860;old_locus_tag=C9E96_13170
NZ_PYJX01000144.1	Protein Homology	CDS	16152	16589	.	-	0	ID=cds-WP_135494271.1;Parent=gene-C9E96_RS12860;Dbxref=GenBank:WP_135494271.1;Name=WP_135494271.1;gbkey=CDS;gene=ppdD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459149.1;locus_tag=C9E96_RS12860;product=prepilin peptidase-dependent pilin;protein_id=WP_135494271.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	16811	17704	.	-	.	ID=gene-C9E96_RS12870;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=C9E96_RS12870;old_locus_tag=C9E96_13180
NZ_PYJX01000144.1	Protein Homology	CDS	16811	17704	.	-	0	ID=cds-WP_135494273.1;Parent=gene-C9E96_RS12870;Dbxref=GenBank:WP_135494273.1;Name=WP_135494273.1;Ontology_term=GO:0009435,GO:0004514;gbkey=CDS;gene=nadC;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459150.1;locus_tag=C9E96_RS12870;product=carboxylating nicotinate-nucleotide diphosphorylase;protein_id=WP_135494273.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	17792	18355	.	+	.	ID=gene-C9E96_RS12875;Name=ampD;gbkey=Gene;gene=ampD;gene_biotype=protein_coding;locus_tag=C9E96_RS12875;old_locus_tag=C9E96_13185
NZ_PYJX01000144.1	Protein Homology	CDS	17792	18355	.	+	0	ID=cds-WP_000936326.1;Parent=gene-C9E96_RS12875;Dbxref=GenBank:WP_000936326.1;Name=WP_000936326.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=ampD;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459151.1;locus_tag=C9E96_RS12875;product=1%2C6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD;protein_id=WP_000936326.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	18352	19206	.	+	.	ID=gene-C9E96_RS12880;Name=ampE;gbkey=Gene;gene=ampE;gene_biotype=protein_coding;locus_tag=C9E96_RS12880;old_locus_tag=C9E96_13190
NZ_PYJX01000144.1	Protein Homology	CDS	18352	19206	.	+	0	ID=cds-WP_000172039.1;Parent=gene-C9E96_RS12880;Dbxref=GenBank:WP_000172039.1;Name=WP_000172039.1;gbkey=CDS;gene=ampE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459152.1;locus_tag=C9E96_RS12880;product=beta-lactamase regulator AmpE;protein_id=WP_000172039.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	19298	20248	.	-	.	ID=gene-C9E96_RS12885;Name=C9E96_RS12885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12885;old_locus_tag=C9E96_13195
NZ_PYJX01000144.1	Protein Homology	CDS	19298	20248	.	-	0	ID=cds-WP_001622553.1;Parent=gene-C9E96_RS12885;Dbxref=GenBank:WP_001622553.1;Name=WP_001622553.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459153.1;locus_tag=C9E96_RS12885;product=glycoside hydrolase family 43 protein;protein_id=WP_001622553.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	20248	21654	.	-	.	ID=gene-C9E96_RS12890;Name=C9E96_RS12890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12890;old_locus_tag=C9E96_13200
NZ_PYJX01000144.1	Protein Homology	CDS	20248	21654	.	-	0	ID=cds-WP_000357530.1;Parent=gene-C9E96_RS12890;Dbxref=GenBank:WP_000357530.1;Name=WP_000357530.1;Ontology_term=GO:0006812,GO:0008643,GO:0015486,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=glycoside-pentoside-hexuronide:cation symporter activity|0015486||IEA;go_process=monoatomic cation transport|0006812||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459154.1;locus_tag=C9E96_RS12890;product=glycoside-pentoside-hexuronide (GPH):cation symporter;protein_id=WP_000357530.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	21818	23191	.	-	.	ID=gene-C9E96_RS12895;Name=aroP;gbkey=Gene;gene=aroP;gene_biotype=protein_coding;locus_tag=C9E96_RS12895;old_locus_tag=C9E96_13205
NZ_PYJX01000144.1	Protein Homology	CDS	21818	23191	.	-	0	ID=cds-WP_000969487.1;Parent=gene-C9E96_RS12895;Dbxref=GenBank:WP_000969487.1;Name=WP_000969487.1;Ontology_term=GO:0006865;gbkey=CDS;gene=aroP;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459155.1;locus_tag=C9E96_RS12895;product=aromatic amino acid transporter AroP;protein_id=WP_000969487.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	gene	23754	24518	.	+	.	ID=gene-C9E96_RS12900;Name=pdhR;gbkey=Gene;gene=pdhR;gene_biotype=protein_coding;locus_tag=C9E96_RS12900;old_locus_tag=C9E96_13210
NZ_PYJX01000144.1	Protein Homology	CDS	23754	24518	.	+	0	ID=cds-WP_000331771.1;Parent=gene-C9E96_RS12900;Dbxref=GenBank:WP_000331771.1;Name=WP_000331771.1;gbkey=CDS;gene=pdhR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459156.1;locus_tag=C9E96_RS12900;product=pyruvate dehydrogenase complex transcriptional repressor PdhR;protein_id=WP_000331771.1;transl_table=11
NZ_PYJX01000144.1	RefSeq	pseudogene	24678	25640	.	+	.	ID=gene-C9E96_RS12905;Name=aceE;end_range=25640,.;gbkey=Gene;gene=aceE;gene_biotype=pseudogene;locus_tag=C9E96_RS12905;old_locus_tag=C9E96_13215;partial=true;pseudo=true
NZ_PYJX01000144.1	Protein Homology	CDS	24678	25640	.	+	0	ID=cds-C9E96_RS12905;Parent=gene-C9E96_RS12905;Note=E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=25640,.;gbkey=CDS;gene=aceE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008814576.1;locus_tag=C9E96_RS12905;partial=true;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000135.1 1 25601
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000135.1	RefSeq	region	1	25601	.	+	.	ID=NZ_PYJX01000135.1:1..25601;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000135.1	RefSeq	pseudogene	1	163	.	-	.	ID=gene-C9E96_RS11175;Name=C9E96_RS11175;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS11175;old_locus_tag=C9E96_11450;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000135.1	Protein Homology	CDS	1	163	.	-	0	ID=cds-C9E96_RS11175;Parent=gene-C9E96_RS11175;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461717.1;locus_tag=C9E96_RS11175;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	185	1453	.	-	.	ID=gene-C9E96_RS11180;Name=lhgO;gbkey=Gene;gene=lhgO;gene_biotype=protein_coding;locus_tag=C9E96_RS11180;old_locus_tag=C9E96_11455
NZ_PYJX01000135.1	Protein Homology	CDS	185	1453	.	-	0	ID=cds-WP_135494207.1;Parent=gene-C9E96_RS11180;Dbxref=GenBank:WP_135494207.1;Name=WP_135494207.1;Ontology_term=GO:0016491;gbkey=CDS;gene=lhgO;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461716.1;locus_tag=C9E96_RS11180;product=L-2-hydroxyglutarate oxidase;protein_id=WP_135494207.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	1479	2456	.	-	.	ID=gene-C9E96_RS11185;Name=glaH;gbkey=Gene;gene=glaH;gene_biotype=protein_coding;locus_tag=C9E96_RS11185;old_locus_tag=C9E96_11460
NZ_PYJX01000135.1	Protein Homology	CDS	1479	2456	.	-	0	ID=cds-WP_000993100.1;Parent=gene-C9E96_RS11185;Dbxref=GenBank:WP_000993100.1;Name=WP_000993100.1;Ontology_term=GO:0050498;gbkey=CDS;gene=glaH;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C with 2-oxoglutarate as one donor%2C and the other dehydrogenated|0050498||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417145.4;locus_tag=C9E96_RS11185;product=glutarate dioxygenase GlaH;protein_id=WP_000993100.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	2760	4274	.	-	.	ID=gene-C9E96_RS11190;Name=C9E96_RS11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11190;old_locus_tag=C9E96_11465
NZ_PYJX01000135.1	Protein Homology	CDS	2760	4274	.	-	0	ID=cds-WP_000382034.1;Parent=gene-C9E96_RS11190;Dbxref=GenBank:WP_000382034.1;Name=WP_000382034.1;Ontology_term=GO:0006810,GO:0042597;gbkey=CDS;go_component=periplasmic space|0042597||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461714.1;locus_tag=C9E96_RS11190;product=tripartite tricarboxylate transporter permease;protein_id=WP_000382034.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	4285	4719	.	-	.	ID=gene-C9E96_RS11195;Name=C9E96_RS11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11195;old_locus_tag=C9E96_11470
NZ_PYJX01000135.1	Protein Homology	CDS	4285	4719	.	-	0	ID=cds-WP_001574835.1;Parent=gene-C9E96_RS11195;Dbxref=GenBank:WP_001574835.1;Name=WP_001574835.1;Ontology_term=GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461713.3;locus_tag=C9E96_RS11195;product=tripartite tricarboxylate transporter TctB family protein;protein_id=WP_001574835.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	4731	5708	.	-	.	ID=gene-C9E96_RS11200;Name=C9E96_RS11200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11200;old_locus_tag=C9E96_11475
NZ_PYJX01000135.1	Protein Homology	CDS	4731	5708	.	-	0	ID=cds-WP_000744413.1;Parent=gene-C9E96_RS11200;Dbxref=GenBank:WP_000744413.1;Name=WP_000744413.1;Ontology_term=GO:0042597;gbkey=CDS;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461712.1;locus_tag=C9E96_RS11200;product=Bug family tripartite tricarboxylate transporter substrate binding protein;protein_id=WP_000744413.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	5863	6537	.	+	.	ID=gene-C9E96_RS11205;Name=tctD;gbkey=Gene;gene=tctD;gene_biotype=protein_coding;locus_tag=C9E96_RS11205;old_locus_tag=C9E96_11480
NZ_PYJX01000135.1	Protein Homology	CDS	5863	6537	.	+	0	ID=cds-WP_001237934.1;Parent=gene-C9E96_RS11205;Dbxref=GenBank:WP_001237934.1;Name=WP_001237934.1;gbkey=CDS;gene=tctD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461711.1;locus_tag=C9E96_RS11205;product=transcriptional regulator TctD;protein_id=WP_001237934.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	6524	7939	.	+	.	ID=gene-C9E96_RS11210;Name=C9E96_RS11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11210;old_locus_tag=C9E96_11485
NZ_PYJX01000135.1	Protein Homology	CDS	6524	7939	.	+	0	ID=cds-WP_000872338.1;Parent=gene-C9E96_RS11210;Dbxref=GenBank:WP_000872338.1;Name=WP_000872338.1;Ontology_term=GO:0000160,GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461710.1;locus_tag=C9E96_RS11210;product=sensor histidine kinase;protein_id=WP_000872338.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	8072	9085	.	+	.	ID=gene-C9E96_RS11215;Name=C9E96_RS11215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11215;old_locus_tag=C9E96_11490
NZ_PYJX01000135.1	Protein Homology	CDS	8072	9085	.	+	0	ID=cds-WP_001059351.1;Parent=gene-C9E96_RS11215;Dbxref=GenBank:WP_001059351.1;Name=WP_001059351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461709.1;locus_tag=C9E96_RS11215;product=HoxN/HupN/NixA family nickel/cobalt transporter;protein_id=WP_001059351.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	9807	10703	.	-	.	ID=gene-C9E96_RS11220;Name=C9E96_RS11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11220;old_locus_tag=C9E96_11495
NZ_PYJX01000135.1	Protein Homology	CDS	9807	10703	.	-	0	ID=cds-WP_080204040.1;Parent=gene-C9E96_RS11220;Dbxref=GenBank:WP_080204040.1;Name=WP_080204040.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461708.1;locus_tag=C9E96_RS11220;product=antimicrobial resistance protein Mig-14;protein_id=WP_080204040.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	10997	11926	.	-	.	ID=gene-C9E96_RS11230;Name=C9E96_RS11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11230;old_locus_tag=C9E96_11505
NZ_PYJX01000135.1	Protein Homology	CDS	10997	11926	.	-	0	ID=cds-WP_000178742.1;Parent=gene-C9E96_RS11230;Dbxref=GenBank:WP_000178742.1;Name=WP_000178742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461707.1;locus_tag=C9E96_RS11230;product=VirK family antimicrobial peptide resistance protein;protein_id=WP_000178742.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	12444	13496	.	+	.	ID=gene-C9E96_RS11235;Name=pipB2;gbkey=Gene;gene=pipB2;gene_biotype=protein_coding;locus_tag=C9E96_RS11235;old_locus_tag=C9E96_11510
NZ_PYJX01000135.1	Protein Homology	CDS	12444	13496	.	+	0	ID=cds-WP_080204047.1;Parent=gene-C9E96_RS11235;Dbxref=GenBank:WP_080204047.1;Name=WP_080204047.1;gbkey=CDS;gene=pipB2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461706.1;locus_tag=C9E96_RS11235;product=SPI-2 type III secretion system effector PipB2;protein_id=WP_080204047.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	14540	16714	.	+	.	ID=gene-C9E96_RS11245;Name=C9E96_RS11245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11245;old_locus_tag=C9E96_11520
NZ_PYJX01000135.1	Protein Homology	CDS	14540	16714	.	+	0	ID=cds-WP_001747679.1;Parent=gene-C9E96_RS11245;Dbxref=GenBank:WP_001747679.1;Name=WP_001747679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001542215.1;locus_tag=C9E96_RS11245;product=TonB-dependent siderophore receptor;protein_id=WP_001747679.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	16756	17691	.	-	.	ID=gene-C9E96_RS11250;Name=C9E96_RS11250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11250;old_locus_tag=C9E96_11525
NZ_PYJX01000135.1	Protein Homology	CDS	16756	17691	.	-	0	ID=cds-WP_080204042.1;Parent=gene-C9E96_RS11250;Dbxref=GenBank:WP_080204042.1;Name=WP_080204042.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461703.1;locus_tag=C9E96_RS11250;product=alpha/beta hydrolase;protein_id=WP_080204042.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	17723	18967	.	-	.	ID=gene-C9E96_RS11255;Name=C9E96_RS11255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11255;old_locus_tag=C9E96_11530
NZ_PYJX01000135.1	Protein Homology	CDS	17723	18967	.	-	0	ID=cds-WP_080204043.1;Parent=gene-C9E96_RS11255;Dbxref=GenBank:WP_080204043.1;Name=WP_080204043.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461702.1;locus_tag=C9E96_RS11255;product=esterase family protein;protein_id=WP_080204043.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	19077	22733	.	-	.	ID=gene-C9E96_RS11260;Name=iroC;gbkey=Gene;gene=iroC;gene_biotype=protein_coding;locus_tag=C9E96_RS11260;old_locus_tag=C9E96_11535
NZ_PYJX01000135.1	Protein Homology	CDS	19077	22733	.	-	0	ID=cds-WP_080204044.1;Parent=gene-C9E96_RS11260;Dbxref=GenBank:WP_080204044.1;Name=WP_080204044.1;gbkey=CDS;gene=iroC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461701.1;locus_tag=C9E96_RS11260;product=salmochelin/enterobactin export ABC transporter IroC;protein_id=WP_080204044.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	22814	23929	.	-	.	ID=gene-C9E96_RS11265;Name=iroB;gbkey=Gene;gene=iroB;gene_biotype=protein_coding;locus_tag=C9E96_RS11265;old_locus_tag=C9E96_11540
NZ_PYJX01000135.1	Protein Homology	CDS	22814	23929	.	-	0	ID=cds-WP_023216370.1;Parent=gene-C9E96_RS11265;Dbxref=GenBank:WP_023216370.1;Name=WP_023216370.1;gbkey=CDS;gene=iroB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461700.1;locus_tag=C9E96_RS11265;product=salmochelin biosynthesis C-glycosyltransferase IroB;protein_id=WP_023216370.1;transl_table=11
NZ_PYJX01000135.1	RefSeq	gene	24619	25191	.	+	.	ID=gene-C9E96_RS11275;Name=hin;gbkey=Gene;gene=hin;gene_biotype=protein_coding;locus_tag=C9E96_RS11275;old_locus_tag=C9E96_11550
NZ_PYJX01000135.1	Protein Homology	CDS	24619	25191	.	+	0	ID=cds-WP_000190912.1;Parent=gene-C9E96_RS11275;Dbxref=GenBank:WP_000190912.1;Name=WP_000190912.1;gbkey=CDS;gene=hin;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461699.1;locus_tag=C9E96_RS11275;product=flagellar phase variation DNA invertase Hin;protein_id=WP_000190912.1;transl_table=11
##sequence-region NZ_PYJX01000188.1 1 96373
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000188.1	RefSeq	region	1	96373	.	+	.	ID=NZ_PYJX01000188.1:1..96373;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000188.1	RefSeq	gene	1	2059	.	-	.	ID=gene-C9E96_RS17735;Name=topA;gbkey=Gene;gene=topA;gene_biotype=protein_coding;locus_tag=C9E96_RS17735;old_locus_tag=C9E96_18215;partial=true;start_range=.,1
NZ_PYJX01000188.1	Protein Homology	CDS	1	2059	.	-	0	ID=cds-WP_061585988.1;Parent=gene-C9E96_RS17735;Dbxref=GenBank:WP_061585988.1;Name=WP_061585988.1;Ontology_term=GO:0006260,GO:0006265,GO:0003677,GO:0003917,GO:0005737;gbkey=CDS;gene=topA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type I (single strand cut%2C ATP-independent) activity|0003917||IEA;go_process=DNA replication|0006260||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000513601.1;locus_tag=C9E96_RS17735;partial=true;product=type I DNA topoisomerase;protein_id=WP_061585988.1;start_range=.,1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	2462	2713	.	+	.	ID=gene-C9E96_RS17740;Name=C9E96_RS17740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17740;old_locus_tag=C9E96_18225
NZ_PYJX01000188.1	Protein Homology	CDS	2462	2713	.	+	0	ID=cds-WP_000548616.1;Parent=gene-C9E96_RS17740;Dbxref=GenBank:WP_000548616.1;Name=WP_000548616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460674.1;locus_tag=C9E96_RS17740;product=YciN family protein;protein_id=WP_000548616.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	2755	3801	.	-	.	ID=gene-C9E96_RS17745;Name=sohB;gbkey=Gene;gene=sohB;gene_biotype=protein_coding;locus_tag=C9E96_RS17745;old_locus_tag=C9E96_18230
NZ_PYJX01000188.1	Protein Homology	CDS	2755	3801	.	-	0	ID=cds-WP_000422082.1;Parent=gene-C9E96_RS17745;Dbxref=GenBank:WP_000422082.1;Name=WP_000422082.1;Ontology_term=GO:0006508,GO:0008233;gbkey=CDS;gene=sohB;go_function=peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460675.1;locus_tag=C9E96_RS17745;product=protease SohB;protein_id=WP_000422082.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	4039	4800	.	+	.	ID=gene-C9E96_RS17750;Name=C9E96_RS17750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17750;old_locus_tag=C9E96_18235
NZ_PYJX01000188.1	Protein Homology	CDS	4039	4800	.	+	0	ID=cds-WP_000559310.1;Parent=gene-C9E96_RS17750;Dbxref=GenBank:WP_000559310.1;Name=WP_000559310.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460676.1;locus_tag=C9E96_RS17750;product=YciK family oxidoreductase;protein_id=WP_000559310.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	4797	5387	.	+	.	ID=gene-C9E96_RS17755;Name=cobO;gbkey=Gene;gene=cobO;gene_biotype=protein_coding;locus_tag=C9E96_RS17755;old_locus_tag=C9E96_18240
NZ_PYJX01000188.1	Protein Homology	CDS	4797	5387	.	+	0	ID=cds-WP_079897934.1;Parent=gene-C9E96_RS17755;Dbxref=GenBank:WP_079897934.1;Name=WP_079897934.1;Ontology_term=GO:0009236,GO:0008817;gbkey=CDS;gene=cobO;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460677.1;locus_tag=C9E96_RS17755;product=cob(I)yrinic acid a%2Cc-diamide adenosyltransferase;protein_id=WP_079897934.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	5474	6349	.	-	.	ID=gene-C9E96_RS17760;Name=rluB;gbkey=Gene;gene=rluB;gene_biotype=protein_coding;locus_tag=C9E96_RS17760;old_locus_tag=C9E96_18245
NZ_PYJX01000188.1	Protein Homology	CDS	5474	6349	.	-	0	ID=cds-WP_001291233.1;Parent=gene-C9E96_RS17760;Dbxref=GenBank:WP_001291233.1;Name=WP_001291233.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460678.1;locus_tag=C9E96_RS17760;product=23S rRNA pseudouridine(2605) synthase RluB;protein_id=WP_001291233.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	6450	7070	.	-	.	ID=gene-C9E96_RS17765;Name=C9E96_RS17765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17765;old_locus_tag=C9E96_18250
NZ_PYJX01000188.1	Protein Homology	CDS	6450	7070	.	-	0	ID=cds-WP_000077250.1;Parent=gene-C9E96_RS17765;Dbxref=GenBank:WP_000077250.1;Name=WP_000077250.1;Ontology_term=GO:0006400,GO:0003725,GO:0061710;gbkey=CDS;go_function=double-stranded RNA binding|0003725||IEA,L-threonylcarbamoyladenylate synthase|0061710||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126434.1;locus_tag=C9E96_RS17765;product=L-threonylcarbamoyladenylate synthase;protein_id=WP_000077250.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	7078	7959	.	-	.	ID=gene-C9E96_RS17770;Name=rnm;gbkey=Gene;gene=rnm;gene_biotype=protein_coding;gene_synonym=trpH,yciV;locus_tag=C9E96_RS17770;old_locus_tag=C9E96_18255
NZ_PYJX01000188.1	Protein Homology	CDS	7078	7959	.	-	0	ID=cds-WP_000500437.1;Parent=gene-C9E96_RS17770;Dbxref=GenBank:WP_000500437.1;Name=WP_000500437.1;Ontology_term=GO:0006364,GO:0004534,GO:0035312,GO:0097657;gbkey=CDS;gene=rnm;go_function=5'-3' RNA exonuclease activity|0004534||IEA,5'-3' DNA exonuclease activity|0035312||IEA,3'%2C5'-nucleotide bisphosphate phosphatase activity|0097657||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460680.1;locus_tag=C9E96_RS17770;product=RNase RNM;protein_id=WP_000500437.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	8081	8125	.	+	.	ID=gene-C9E96_RS17775;Name=trpL;gbkey=Gene;gene=trpL;gene_biotype=protein_coding;locus_tag=C9E96_RS17775;old_locus_tag=C9E96_18260
NZ_PYJX01000188.1	Protein Homology	CDS	8081	8125	.	+	0	ID=cds-WP_131040947.1;Parent=gene-C9E96_RS17775;Dbxref=GenBank:WP_131040947.1;Name=WP_131040947.1;gbkey=CDS;gene=trpL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448140.1;locus_tag=C9E96_RS17775;product=trp operon leader peptide;protein_id=WP_131040947.1;transl_table=11
NZ_PYJX01000188.1	cmsearch	sequence_feature	8102	8197	.	+	.	ID=id-NZ_PYJX01000188.1:8102..8197;Dbxref=RFAM:RF00513;Note=Trp leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYJX01000188.1	RefSeq	gene	8220	9782	.	+	.	ID=gene-C9E96_RS17780;Name=C9E96_RS17780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17780;old_locus_tag=C9E96_18265
NZ_PYJX01000188.1	Protein Homology	CDS	8220	9782	.	+	0	ID=cds-WP_001194386.1;Parent=gene-C9E96_RS17780;Dbxref=GenBank:WP_001194386.1;Name=WP_001194386.1;Ontology_term=GO:0009058,GO:0004049;gbkey=CDS;go_function=anthranilate synthase activity|0004049||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460682.1;locus_tag=C9E96_RS17780;product=anthranilate synthase component 1;protein_id=WP_001194386.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	9782	11377	.	+	.	ID=gene-C9E96_RS17785;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=C9E96_RS17785;old_locus_tag=C9E96_18270
NZ_PYJX01000188.1	Protein Homology	CDS	9782	11377	.	+	0	ID=cds-WP_135494471.1;Parent=gene-C9E96_RS17785;Dbxref=GenBank:WP_135494471.1;Name=WP_135494471.1;Ontology_term=GO:0000162,GO:0004048;gbkey=CDS;gene=trpD;go_function=anthranilate phosphoribosyltransferase activity|0004048||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008784940.1;locus_tag=C9E96_RS17785;product=bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD;protein_id=WP_135494471.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	11381	12739	.	+	.	ID=gene-C9E96_RS17790;Name=trpCF;gbkey=Gene;gene=trpCF;gene_biotype=protein_coding;locus_tag=C9E96_RS17790;old_locus_tag=C9E96_18275
NZ_PYJX01000188.1	Protein Homology	CDS	11381	12739	.	+	0	ID=cds-WP_001195300.1;Parent=gene-C9E96_RS17790;Dbxref=GenBank:WP_001195300.1;Name=WP_001195300.1;Ontology_term=GO:0006568,GO:0004425,GO:0004640;gbkey=CDS;gene=trpCF;go_function=indole-3-glycerol-phosphate synthase activity|0004425||IEA,phosphoribosylanthranilate isomerase activity|0004640||IEA;go_process=L-tryptophan metabolic process|0006568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460684.1;locus_tag=C9E96_RS17790;product=bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF;protein_id=WP_001195300.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	12749	13942	.	+	.	ID=gene-C9E96_RS17795;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=C9E96_RS17795;old_locus_tag=C9E96_18280
NZ_PYJX01000188.1	Protein Homology	CDS	12749	13942	.	+	0	ID=cds-WP_000209485.1;Parent=gene-C9E96_RS17795;Dbxref=GenBank:WP_000209485.1;Name=WP_000209485.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpB;go_function=tryptophan synthase activity|0004834||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460685.1;locus_tag=C9E96_RS17795;product=tryptophan synthase subunit beta;protein_id=WP_000209485.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	13942	14748	.	+	.	ID=gene-C9E96_RS17800;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=C9E96_RS17800;old_locus_tag=C9E96_18285
NZ_PYJX01000188.1	Protein Homology	CDS	13942	14748	.	+	0	ID=cds-WP_135369864.1;Parent=gene-C9E96_RS17800;Dbxref=GenBank:WP_135369864.1;Name=WP_135369864.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpA;go_function=tryptophan synthase activity|0004834||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460686.1;locus_tag=C9E96_RS17800;product=tryptophan synthase subunit alpha;protein_id=WP_135369864.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	15228	15410	.	+	.	ID=gene-C9E96_RS17805;Name=C9E96_RS17805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17805;old_locus_tag=C9E96_18290
NZ_PYJX01000188.1	Protein Homology	CDS	15228	15410	.	+	0	ID=cds-WP_000807657.1;Parent=gene-C9E96_RS17805;Dbxref=GenBank:WP_000807657.1;Name=WP_000807657.1;Ontology_term=GO:0006950;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460687.1;locus_tag=C9E96_RS17805;product=general stress protein;protein_id=WP_000807657.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	15500	16003	.	+	.	ID=gene-C9E96_RS17810;Name=C9E96_RS17810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17810;old_locus_tag=C9E96_18295
NZ_PYJX01000188.1	Protein Homology	CDS	15500	16003	.	+	0	ID=cds-WP_001022822.1;Parent=gene-C9E96_RS17810;Dbxref=GenBank:WP_001022822.1;Name=WP_001022822.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460688.1;locus_tag=C9E96_RS17810;product=ferritin-like domain-containing protein;protein_id=WP_001022822.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	16077	16583	.	+	.	ID=gene-C9E96_RS17815;Name=C9E96_RS17815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17815;old_locus_tag=C9E96_18300
NZ_PYJX01000188.1	Protein Homology	CDS	16077	16583	.	+	0	ID=cds-WP_001109977.1;Parent=gene-C9E96_RS17815;Dbxref=GenBank:WP_001109977.1;Name=WP_001109977.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460689.1;locus_tag=C9E96_RS17815;product=ferritin-like domain-containing protein;protein_id=WP_001109977.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	16603	17481	.	+	.	ID=gene-C9E96_RS17820;Name=C9E96_RS17820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17820;old_locus_tag=C9E96_18305
NZ_PYJX01000188.1	Protein Homology	CDS	16603	17481	.	+	0	ID=cds-WP_000488354.1;Parent=gene-C9E96_RS17820;Dbxref=GenBank:WP_000488354.1;Name=WP_000488354.1;Ontology_term=GO:0004096,GO:0046872;gbkey=CDS;go_function=catalase activity|0004096||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460690.1;locus_tag=C9E96_RS17820;product=manganese catalase family protein;protein_id=WP_000488354.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	17563	18201	.	-	.	ID=gene-C9E96_RS17825;Name=ompW;gbkey=Gene;gene=ompW;gene_biotype=protein_coding;locus_tag=C9E96_RS17825;old_locus_tag=C9E96_18310
NZ_PYJX01000188.1	Protein Homology	CDS	17563	18201	.	-	0	ID=cds-WP_058331447.1;Parent=gene-C9E96_RS17825;Dbxref=GenBank:WP_058331447.1;Name=WP_058331447.1;Ontology_term=GO:0019867;gbkey=CDS;gene=ompW;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460691.1;locus_tag=C9E96_RS17825;product=outer membrane protein OmpW;protein_id=WP_058331447.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	18538	18942	.	+	.	ID=gene-C9E96_RS17830;Name=C9E96_RS17830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17830;old_locus_tag=C9E96_18315
NZ_PYJX01000188.1	Protein Homology	CDS	18538	18942	.	+	0	ID=cds-WP_000114955.1;Parent=gene-C9E96_RS17830;Dbxref=GenBank:WP_000114955.1;Name=WP_000114955.1;Ontology_term=GO:0046872,GO:0051536;gbkey=CDS;go_function=metal ion binding|0046872||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460692.1;locus_tag=C9E96_RS17830;product=YkgJ family cysteine cluster protein;protein_id=WP_000114955.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	18968	19711	.	+	.	ID=gene-C9E96_RS17835;Name=C9E96_RS17835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17835;old_locus_tag=C9E96_18320
NZ_PYJX01000188.1	Protein Homology	CDS	18968	19711	.	+	0	ID=cds-WP_000028507.1;Parent=gene-C9E96_RS17835;Dbxref=GenBank:WP_000028507.1;Name=WP_000028507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460693.1;locus_tag=C9E96_RS17835;product=YciC family protein;protein_id=WP_000028507.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	19768	20307	.	+	.	ID=gene-C9E96_RS17840;Name=C9E96_RS17840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17840;old_locus_tag=C9E96_18325
NZ_PYJX01000188.1	Protein Homology	CDS	19768	20307	.	+	0	ID=cds-WP_000808682.1;Parent=gene-C9E96_RS17840;Dbxref=GenBank:WP_000808682.1;Name=WP_000808682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460694.1;locus_tag=C9E96_RS17840;product=septation protein A;protein_id=WP_000808682.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	20468	20869	.	+	.	ID=gene-C9E96_RS17845;Name=yciA;gbkey=Gene;gene=yciA;gene_biotype=protein_coding;locus_tag=C9E96_RS17845;old_locus_tag=C9E96_18330
NZ_PYJX01000188.1	Protein Homology	CDS	20468	20869	.	+	0	ID=cds-WP_000210317.1;Parent=gene-C9E96_RS17845;Dbxref=GenBank:WP_000210317.1;Name=WP_000210317.1;Ontology_term=GO:0016790;gbkey=CDS;gene=yciA;go_function=thiolester hydrolase activity|0016790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460695.1;locus_tag=C9E96_RS17845;product=acyl-CoA thioester hydrolase YciA;protein_id=WP_000210317.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	20929	21651	.	-	.	ID=gene-C9E96_RS17850;Name=tonB;gbkey=Gene;gene=tonB;gene_biotype=protein_coding;locus_tag=C9E96_RS17850;old_locus_tag=C9E96_18335
NZ_PYJX01000188.1	Protein Homology	CDS	20929	21651	.	-	0	ID=cds-WP_135494481.1;Parent=gene-C9E96_RS17850;Dbxref=GenBank:WP_135494481.1;Name=WP_135494481.1;Ontology_term=GO:0015891,GO:0055085,GO:0015343,GO:0030288;gbkey=CDS;gene=tonB;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=siderophore-iron transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460696.1;locus_tag=C9E96_RS17850;product=TonB system transport protein TonB;protein_id=WP_135494481.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	21875	22171	.	+	.	ID=gene-C9E96_RS17855;Name=C9E96_RS17855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17855;old_locus_tag=C9E96_18340
NZ_PYJX01000188.1	Protein Homology	CDS	21875	22171	.	+	0	ID=cds-WP_000967605.1;Parent=gene-C9E96_RS17855;Dbxref=GenBank:WP_000967605.1;Name=WP_000967605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460697.1;locus_tag=C9E96_RS17855;product=YciI family protein;protein_id=WP_000967605.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	22215	22388	.	-	.	ID=gene-C9E96_RS17860;Name=C9E96_RS17860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17860
NZ_PYJX01000188.1	Protein Homology	CDS	22215	22388	.	-	0	ID=cds-WP_001531561.1;Parent=gene-C9E96_RS17860;Dbxref=GenBank:WP_001531561.1;Name=WP_001531561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165316.1;locus_tag=C9E96_RS17860;product=YciY family protein;protein_id=WP_001531561.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	22531	23991	.	+	.	ID=gene-C9E96_RS17865;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=C9E96_RS17865;old_locus_tag=C9E96_18345
NZ_PYJX01000188.1	Protein Homology	CDS	22531	23991	.	+	0	ID=cds-WP_000206886.1;Parent=gene-C9E96_RS17865;Dbxref=GenBank:WP_000206886.1;Name=WP_000206886.1;Ontology_term=GO:0032049,GO:0008808,GO:0016780;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126413.1;locus_tag=C9E96_RS17865;product=cardiolipin synthase;protein_id=WP_000206886.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	24025	24354	.	+	.	ID=gene-C9E96_RS17870;Name=C9E96_RS17870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17870;old_locus_tag=C9E96_18350
NZ_PYJX01000188.1	Protein Homology	CDS	24025	24354	.	+	0	ID=cds-WP_000425070.1;Parent=gene-C9E96_RS17870;Dbxref=GenBank:WP_000425070.1;Name=WP_000425070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448158.1;locus_tag=C9E96_RS17870;product=HI1450 family dsDNA-mimic protein;protein_id=WP_000425070.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	24402	25238	.	-	.	ID=gene-C9E96_RS17875;Name=C9E96_RS17875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17875;old_locus_tag=C9E96_18355
NZ_PYJX01000188.1	Protein Homology	CDS	24402	25238	.	-	0	ID=cds-WP_000059074.1;Parent=gene-C9E96_RS17875;Dbxref=GenBank:WP_000059074.1;Name=WP_000059074.1;Ontology_term=GO:0006811,GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=monoatomic ion transport|0006811||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460700.1;locus_tag=C9E96_RS17875;product=ion transporter;protein_id=WP_000059074.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	25286	26290	.	-	.	ID=gene-C9E96_RS17880;Name=oppF;gbkey=Gene;gene=oppF;gene_biotype=protein_coding;locus_tag=C9E96_RS17880;old_locus_tag=C9E96_18360
NZ_PYJX01000188.1	Protein Homology	CDS	25286	26290	.	-	0	ID=cds-WP_000994698.1;Parent=gene-C9E96_RS17880;Dbxref=GenBank:WP_000994698.1;Name=WP_000994698.1;gbkey=CDS;gene=oppF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506804.1;locus_tag=C9E96_RS17880;product=murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF;protein_id=WP_000994698.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	26287	27294	.	-	.	ID=gene-C9E96_RS17885;Name=C9E96_RS17885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17885;old_locus_tag=C9E96_18365
NZ_PYJX01000188.1	Protein Homology	CDS	26287	27294	.	-	0	ID=cds-WP_000058857.1;Parent=gene-C9E96_RS17885;Dbxref=GenBank:WP_000058857.1;Name=WP_000058857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460702.1;locus_tag=C9E96_RS17885;product=ABC transporter ATP-binding protein;protein_id=WP_000058857.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	27306	28214	.	-	.	ID=gene-C9E96_RS17890;Name=oppC;gbkey=Gene;gene=oppC;gene_biotype=protein_coding;locus_tag=C9E96_RS17890;old_locus_tag=C9E96_18370
NZ_PYJX01000188.1	Protein Homology	CDS	27306	28214	.	-	0	ID=cds-WP_000979653.1;Parent=gene-C9E96_RS17890;Dbxref=GenBank:WP_000979653.1;Name=WP_000979653.1;Ontology_term=GO:0055085;gbkey=CDS;gene=oppC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000979653.1;locus_tag=C9E96_RS17890;product=oligopeptide ABC transporter permease OppC;protein_id=WP_000979653.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	28229	29149	.	-	.	ID=gene-C9E96_RS17895;Name=oppB;gbkey=Gene;gene=oppB;gene_biotype=protein_coding;locus_tag=C9E96_RS17895;old_locus_tag=C9E96_18375
NZ_PYJX01000188.1	Protein Homology	CDS	28229	29149	.	-	0	ID=cds-WP_000911097.1;Parent=gene-C9E96_RS17895;Dbxref=GenBank:WP_000911097.1;Name=WP_000911097.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=oppB;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126405.1;locus_tag=C9E96_RS17895;product=oligopeptide ABC transporter permease OppB;protein_id=WP_000911097.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	29271	30902	.	-	.	ID=gene-C9E96_RS17900;Name=oppA;gbkey=Gene;gene=oppA;gene_biotype=protein_coding;locus_tag=C9E96_RS17900;old_locus_tag=C9E96_18380
NZ_PYJX01000188.1	Protein Homology	CDS	29271	30902	.	-	0	ID=cds-WP_001527794.1;Parent=gene-C9E96_RS17900;Dbxref=GenBank:WP_001527794.1;Name=WP_001527794.1;Ontology_term=GO:0055085,GO:0043190;gbkey=CDS;gene=oppA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675662.1;locus_tag=C9E96_RS17900;product=oligopeptide ABC transporter substrate-binding protein OppA;protein_id=WP_001527794.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	31679	32326	.	-	.	ID=gene-C9E96_RS17910;Name=C9E96_RS17910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17910;old_locus_tag=C9E96_18390
NZ_PYJX01000188.1	Protein Homology	CDS	31679	32326	.	-	0	ID=cds-WP_000615840.1;Parent=gene-C9E96_RS17910;Dbxref=GenBank:WP_000615840.1;Name=WP_000615840.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460707.1;locus_tag=C9E96_RS17910;product=YchE family NAAT transporter;protein_id=WP_000615840.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	32803	35481	.	+	.	ID=gene-C9E96_RS17915;Name=adhE;gbkey=Gene;gene=adhE;gene_biotype=protein_coding;gene_synonym=adhC;locus_tag=C9E96_RS17915;old_locus_tag=C9E96_18395
NZ_PYJX01000188.1	Protein Homology	CDS	32803	35481	.	+	0	ID=cds-WP_000301678.1;Parent=gene-C9E96_RS17915;Dbxref=GenBank:WP_000301678.1;Name=WP_000301678.1;Ontology_term=GO:0006066,GO:0015976,GO:0004022,GO:0016620,GO:0046872;gbkey=CDS;gene=adhE;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,metal ion binding|0046872||IEA;go_process=alcohol metabolic process|0006066||IEA,carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460708.1;locus_tag=C9E96_RS17915;product=bifunctional acetaldehyde-CoA/alcohol dehydrogenase;protein_id=WP_000301678.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	35678	36295	.	-	.	ID=gene-C9E96_RS17920;Name=tdk;gbkey=Gene;gene=tdk;gene_biotype=protein_coding;locus_tag=C9E96_RS17920;old_locus_tag=C9E96_18400
NZ_PYJX01000188.1	Protein Homology	CDS	35678	36295	.	-	0	ID=cds-WP_000068097.1;Parent=gene-C9E96_RS17920;Dbxref=GenBank:WP_000068097.1;Name=WP_000068097.1;gbkey=CDS;gene=tdk;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460709.1;locus_tag=C9E96_RS17920;product=thymidine kinase;protein_id=WP_000068097.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	36958	37371	.	+	.	ID=gene-C9E96_RS17925;Name=hns;gbkey=Gene;gene=hns;gene_biotype=protein_coding;locus_tag=C9E96_RS17925;old_locus_tag=C9E96_18405
NZ_PYJX01000188.1	Protein Homology	CDS	36958	37371	.	+	0	ID=cds-WP_001287383.1;Parent=gene-C9E96_RS17925;Dbxref=GenBank:WP_001287383.1;Name=WP_001287383.1;Ontology_term=GO:0071824,GO:0003677;gbkey=CDS;gene=hns;go_function=DNA binding|0003677||IEA;go_process=protein-DNA complex organization|0071824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460710.1;locus_tag=C9E96_RS17925;product=histone-like nucleoid-structuring protein H-NS;protein_id=WP_001287383.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	37505	38413	.	-	.	ID=gene-C9E96_RS17930;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=C9E96_RS17930;old_locus_tag=C9E96_18410
NZ_PYJX01000188.1	Protein Homology	CDS	37505	38413	.	-	0	ID=cds-WP_000729450.1;Parent=gene-C9E96_RS17930;Dbxref=GenBank:WP_000729450.1;Name=WP_000729450.1;gbkey=CDS;gene=galU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460711.1;locus_tag=C9E96_RS17930;product=UTP--glucose-1-phosphate uridylyltransferase GalU;protein_id=WP_000729450.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	38616	39629	.	-	.	ID=gene-C9E96_RS17935;Name=rssB;gbkey=Gene;gene=rssB;gene_biotype=protein_coding;locus_tag=C9E96_RS17935;old_locus_tag=C9E96_18415
NZ_PYJX01000188.1	Protein Homology	CDS	38616	39629	.	-	0	ID=cds-WP_000193432.1;Parent=gene-C9E96_RS17935;Dbxref=GenBank:WP_000193432.1;Name=WP_000193432.1;Ontology_term=GO:0000160;gbkey=CDS;gene=rssB;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460712.1;locus_tag=C9E96_RS17935;product=two-component system response regulator RssB;protein_id=WP_000193432.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	39720	40625	.	-	.	ID=gene-C9E96_RS17940;Name=rssA;gbkey=Gene;gene=rssA;gene_biotype=protein_coding;locus_tag=C9E96_RS17940;old_locus_tag=C9E96_18420
NZ_PYJX01000188.1	Protein Homology	CDS	39720	40625	.	-	0	ID=cds-WP_001230575.1;Parent=gene-C9E96_RS17940;Dbxref=GenBank:WP_001230575.1;Name=WP_001230575.1;Ontology_term=GO:0006629,GO:0004622;gbkey=CDS;gene=rssA;go_function=lysophospholipase activity|0004622||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460713.1;locus_tag=C9E96_RS17940;product=patatin-like phospholipase RssA;protein_id=WP_001230575.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	40736	41194	.	+	.	ID=gene-C9E96_RS17945;Name=C9E96_RS17945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17945;old_locus_tag=C9E96_18425
NZ_PYJX01000188.1	Protein Homology	CDS	40736	41194	.	+	0	ID=cds-WP_001540172.1;Parent=gene-C9E96_RS17945;Dbxref=GenBank:WP_001540172.1;Name=WP_001540172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460714.1;locus_tag=C9E96_RS17945;product=YchJ family protein;protein_id=WP_001540172.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	41245	42087	.	+	.	ID=gene-C9E96_RS17950;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=C9E96_RS17950;old_locus_tag=C9E96_18430
NZ_PYJX01000188.1	Protein Homology	CDS	41245	42087	.	+	0	ID=cds-WP_001191156.1;Parent=gene-C9E96_RS17950;Dbxref=GenBank:WP_001191156.1;Name=WP_001191156.1;Ontology_term=GO:0006189,GO:0008864;gbkey=CDS;gene=purU;go_function=formyltetrahydrofolate deformylase activity|0008864||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460715.1;locus_tag=C9E96_RS17950;product=formyltetrahydrofolate deformylase;protein_id=WP_001191156.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	42258	42399	.	+	.	ID=gene-C9E96_RS17955;Name=C9E96_RS17955;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9E96_RS17955;old_locus_tag=C9E96_18435
NZ_PYJX01000188.1	cmsearch	ncRNA	42258	42399	.	+	.	ID=rna-C9E96_RS17955;Parent=gene-C9E96_RS17955;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS17955;product=RtT sRNA
NZ_PYJX01000188.1	cmsearch	exon	42258	42399	.	+	.	ID=exon-C9E96_RS17955-1;Parent=rna-C9E96_RS17955;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS17955;product=RtT sRNA
NZ_PYJX01000188.1	RefSeq	gene	42428	42512	.	+	.	ID=gene-C9E96_RS17960;Name=C9E96_RS17960;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS17960;old_locus_tag=C9E96_18440
NZ_PYJX01000188.1	tRNAscan-SE	tRNA	42428	42512	.	+	.	ID=rna-C9E96_RS17960;Parent=gene-C9E96_RS17960;anticodon=(pos:42462..42464);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS17960;product=tRNA-Tyr
NZ_PYJX01000188.1	tRNAscan-SE	exon	42428	42512	.	+	.	ID=exon-C9E96_RS17960-1;Parent=rna-C9E96_RS17960;anticodon=(pos:42462..42464);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS17960;product=tRNA-Tyr
NZ_PYJX01000188.1	RefSeq	gene	42556	42686	.	+	.	ID=gene-C9E96_RS17965;Name=C9E96_RS17965;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9E96_RS17965;old_locus_tag=C9E96_18445
NZ_PYJX01000188.1	cmsearch	ncRNA	42556	42686	.	+	.	ID=rna-C9E96_RS17965;Parent=gene-C9E96_RS17965;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS17965;product=RtT sRNA
NZ_PYJX01000188.1	cmsearch	exon	42556	42686	.	+	.	ID=exon-C9E96_RS17965-1;Parent=rna-C9E96_RS17965;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS17965;product=RtT sRNA
NZ_PYJX01000188.1	RefSeq	gene	42730	42861	.	+	.	ID=gene-C9E96_RS17970;Name=C9E96_RS17970;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9E96_RS17970;old_locus_tag=C9E96_18450
NZ_PYJX01000188.1	cmsearch	ncRNA	42730	42861	.	+	.	ID=rna-C9E96_RS17970;Parent=gene-C9E96_RS17970;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS17970;product=RtT sRNA
NZ_PYJX01000188.1	cmsearch	exon	42730	42861	.	+	.	ID=exon-C9E96_RS17970-1;Parent=rna-C9E96_RS17970;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS17970;product=RtT sRNA
NZ_PYJX01000188.1	RefSeq	gene	42964	44493	.	-	.	ID=gene-C9E96_RS17975;Name=C9E96_RS17975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS17975;old_locus_tag=C9E96_18455
NZ_PYJX01000188.1	Protein Homology	CDS	42964	44493	.	-	0	ID=cds-WP_080203673.1;Parent=gene-C9E96_RS17975;Dbxref=GenBank:WP_080203673.1;Name=WP_080203673.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460716.1;locus_tag=C9E96_RS17975;product=tetratricopeptide repeat protein;protein_id=WP_080203673.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	44735	45412	.	-	.	ID=gene-C9E96_RS17985;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=C9E96_RS17985;old_locus_tag=C9E96_18465
NZ_PYJX01000188.1	Protein Homology	CDS	44735	45412	.	-	0	ID=cds-WP_000545594.1;Parent=gene-C9E96_RS17985;Dbxref=GenBank:WP_000545594.1;Name=WP_000545594.1;Ontology_term=GO:0019645,GO:0008940,GO:0009325;gbkey=CDS;gene=narI;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460717.1;locus_tag=C9E96_RS17985;product=respiratory nitrate reductase subunit gamma;protein_id=WP_000545594.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	45412	46122	.	-	.	ID=gene-C9E96_RS17990;Name=narJ;gbkey=Gene;gene=narJ;gene_biotype=protein_coding;locus_tag=C9E96_RS17990;old_locus_tag=C9E96_18470
NZ_PYJX01000188.1	Protein Homology	CDS	45412	46122	.	-	0	ID=cds-WP_000571668.1;Parent=gene-C9E96_RS17990;Dbxref=GenBank:WP_000571668.1;Name=WP_000571668.1;Ontology_term=GO:0051131,GO:0051082;gbkey=CDS;gene=narJ;go_function=unfolded protein binding|0051082||IEA;go_process=chaperone-mediated protein complex assembly|0051131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460718.1;locus_tag=C9E96_RS17990;product=nitrate reductase molybdenum cofactor assembly chaperone;protein_id=WP_000571668.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	46119	47657	.	-	.	ID=gene-C9E96_RS17995;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=C9E96_RS17995;old_locus_tag=C9E96_18475
NZ_PYJX01000188.1	Protein Homology	CDS	46119	47657	.	-	0	ID=cds-WP_080203672.1;Parent=gene-C9E96_RS17995;Dbxref=GenBank:WP_080203672.1;Name=WP_080203672.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;gene=narH;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460719.1;locus_tag=C9E96_RS17995;product=nitrate reductase subunit beta;protein_id=WP_080203672.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	47654	51397	.	-	.	ID=gene-C9E96_RS18000;Name=C9E96_RS18000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18000;old_locus_tag=C9E96_18480
NZ_PYJX01000188.1	Protein Homology	CDS	47654	51397	.	-	0	ID=cds-WP_135494473.1;Parent=gene-C9E96_RS18000;Dbxref=GenBank:WP_135494473.1;Name=WP_135494473.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460720.1;locus_tag=C9E96_RS18000;product=nitrate reductase subunit alpha;protein_id=WP_135494473.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	51785	53182	.	-	.	ID=gene-C9E96_RS18005;Name=narK;gbkey=Gene;gene=narK;gene_biotype=protein_coding;locus_tag=C9E96_RS18005;old_locus_tag=C9E96_18485
NZ_PYJX01000188.1	Protein Homology	CDS	51785	53182	.	-	0	ID=cds-WP_000019848.1;Parent=gene-C9E96_RS18005;Dbxref=GenBank:WP_000019848.1;Name=WP_000019848.1;gbkey=CDS;gene=narK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460721.1;locus_tag=C9E96_RS18005;product=nitrate transporter NarK;protein_id=WP_000019848.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	53523	55319	.	+	.	ID=gene-C9E96_RS18015;Name=narX;gbkey=Gene;gene=narX;gene_biotype=protein_coding;locus_tag=C9E96_RS18015;old_locus_tag=C9E96_18495
NZ_PYJX01000188.1	Protein Homology	CDS	53523	55319	.	+	0	ID=cds-WP_000476244.1;Parent=gene-C9E96_RS18015;Dbxref=GenBank:WP_000476244.1;Name=WP_000476244.1;Ontology_term=GO:0000160,GO:0000155,GO:0046983,GO:0016020;gbkey=CDS;gene=narX;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein dimerization activity|0046983||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460722.1;locus_tag=C9E96_RS18015;product=nitrate/nitrite two-component system sensor histidine kinase NarX;protein_id=WP_000476244.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	55312	55962	.	+	.	ID=gene-C9E96_RS18020;Name=narL;gbkey=Gene;gene=narL;gene_biotype=protein_coding;locus_tag=C9E96_RS18020;old_locus_tag=C9E96_18500
NZ_PYJX01000188.1	Protein Homology	CDS	55312	55962	.	+	0	ID=cds-WP_001064598.1;Parent=gene-C9E96_RS18020;Dbxref=GenBank:WP_001064598.1;Name=WP_001064598.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=narL;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460723.1;locus_tag=C9E96_RS18020;product=two-component system response regulator NarL;protein_id=WP_001064598.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	55963	57387	.	-	.	ID=gene-C9E96_RS18025;Name=C9E96_RS18025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18025;old_locus_tag=C9E96_18505
NZ_PYJX01000188.1	Protein Homology	CDS	55963	57387	.	-	0	ID=cds-WP_079840558.1;Parent=gene-C9E96_RS18025;Dbxref=GenBank:WP_079840558.1;Name=WP_079840558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460724.3;locus_tag=C9E96_RS18025;product=YchO/YchP family invasin;protein_id=WP_079840558.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	57564	57917	.	+	.	ID=gene-C9E96_RS18030;Name=C9E96_RS18030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18030;old_locus_tag=C9E96_18510
NZ_PYJX01000188.1	Protein Homology	CDS	57564	57917	.	+	0	ID=cds-WP_080203671.1;Parent=gene-C9E96_RS18030;Dbxref=GenBank:WP_080203671.1;Name=WP_080203671.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460725.1;locus_tag=C9E96_RS18030;product=DsrE/DsrF/TusD sulfur relay family protein;protein_id=WP_080203671.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	57997	58227	.	-	.	ID=gene-C9E96_RS18035;Name=chaB;gbkey=Gene;gene=chaB;gene_biotype=protein_coding;locus_tag=C9E96_RS18035;old_locus_tag=C9E96_18515
NZ_PYJX01000188.1	Protein Homology	CDS	57997	58227	.	-	0	ID=cds-WP_001146392.1;Parent=gene-C9E96_RS18035;Dbxref=GenBank:WP_001146392.1;Name=WP_001146392.1;gbkey=CDS;gene=chaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460726.1;locus_tag=C9E96_RS18035;product=putative cation transport regulator ChaB;protein_id=WP_001146392.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	58494	59594	.	+	.	ID=gene-C9E96_RS18040;Name=chaA;gbkey=Gene;gene=chaA;gene_biotype=protein_coding;locus_tag=C9E96_RS18040;old_locus_tag=C9E96_18520
NZ_PYJX01000188.1	Protein Homology	CDS	58494	59594	.	+	0	ID=cds-WP_000148418.1;Parent=gene-C9E96_RS18040;Dbxref=GenBank:WP_000148418.1;Name=WP_000148418.1;gbkey=CDS;gene=chaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460727.1;locus_tag=C9E96_RS18040;product=sodium-potassium/proton antiporter ChaA;protein_id=WP_000148418.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	59648	60502	.	-	.	ID=gene-C9E96_RS18045;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=C9E96_RS18045;old_locus_tag=C9E96_18525
NZ_PYJX01000188.1	Protein Homology	CDS	59648	60502	.	-	0	ID=cds-WP_000811046.1;Parent=gene-C9E96_RS18045;Dbxref=GenBank:WP_000811046.1;Name=WP_000811046.1;Ontology_term=GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460728.1;locus_tag=C9E96_RS18045;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_000811046.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	60540	61349	.	-	.	ID=gene-C9E96_RS18050;Name=sirB1;gbkey=Gene;gene=sirB1;gene_biotype=protein_coding;locus_tag=C9E96_RS18050;old_locus_tag=C9E96_18530
NZ_PYJX01000188.1	Protein Homology	CDS	60540	61349	.	-	0	ID=cds-WP_001257065.1;Parent=gene-C9E96_RS18050;Dbxref=GenBank:WP_001257065.1;Name=WP_001257065.1;gbkey=CDS;gene=sirB1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460729.1;locus_tag=C9E96_RS18050;product=invasion regulator SirB1;protein_id=WP_001257065.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	61353	61742	.	-	.	ID=gene-C9E96_RS18055;Name=sirB2;gbkey=Gene;gene=sirB2;gene_biotype=protein_coding;locus_tag=C9E96_RS18055;old_locus_tag=C9E96_18535
NZ_PYJX01000188.1	Protein Homology	CDS	61353	61742	.	-	0	ID=cds-WP_080203670.1;Parent=gene-C9E96_RS18055;Dbxref=GenBank:WP_080203670.1;Name=WP_080203670.1;gbkey=CDS;gene=sirB2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460730.1;locus_tag=C9E96_RS18055;product=invasion regulator SirB2;protein_id=WP_080203670.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	61739	62572	.	-	.	ID=gene-C9E96_RS18060;Name=prmC;gbkey=Gene;gene=prmC;gene_biotype=protein_coding;locus_tag=C9E96_RS18060;old_locus_tag=C9E96_18540
NZ_PYJX01000188.1	Protein Homology	CDS	61739	62572	.	-	0	ID=cds-WP_023993315.1;Parent=gene-C9E96_RS18060;Dbxref=GenBank:WP_023993315.1;Name=WP_023993315.1;Ontology_term=GO:0006412,GO:0018364,GO:0008757;gbkey=CDS;gene=prmC;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=translation|0006412||IEA,peptidyl-glutamine methylation|0018364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460731.1;locus_tag=C9E96_RS18060;product=peptide chain release factor N(5)-glutamine methyltransferase;protein_id=WP_023993315.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	62572	63654	.	-	.	ID=gene-C9E96_RS18065;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=C9E96_RS18065;old_locus_tag=C9E96_18545
NZ_PYJX01000188.1	Protein Homology	CDS	62572	63654	.	-	0	ID=cds-WP_000804703.1;Parent=gene-C9E96_RS18065;Dbxref=GenBank:WP_000804703.1;Name=WP_000804703.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfA;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012132158.1;locus_tag=C9E96_RS18065;product=peptide chain release factor 1;protein_id=WP_000804703.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	pseudogene	63695	64951	.	-	.	ID=gene-C9E96_RS18070;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=pseudogene;locus_tag=C9E96_RS18070;old_locus_tag=C9E96_18550;pseudo=true
NZ_PYJX01000188.1	Protein Homology	CDS	63695	64951	.	-	0	ID=cds-C9E96_RS18070;Parent=gene-C9E96_RS18070;Note=internal stop;Ontology_term=GO:0008883,GO:0050661;gbkey=CDS;gene=hemA;go_function=glutamyl-tRNA reductase activity|0008883||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041689438.1;locus_tag=C9E96_RS18070;product=glutamyl-tRNA reductase;pseudo=true;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	65265	65888	.	+	.	ID=gene-C9E96_RS18075;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=C9E96_RS18075;old_locus_tag=C9E96_18555
NZ_PYJX01000188.1	Protein Homology	CDS	65265	65888	.	+	0	ID=cds-WP_000174484.1;Parent=gene-C9E96_RS18075;Dbxref=GenBank:WP_000174484.1;Name=WP_000174484.1;Ontology_term=GO:0015031,GO:0009279;gbkey=CDS;gene=lolB;go_component=cell outer membrane|0009279||IEA;go_process=protein transport|0015031||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460734.1;locus_tag=C9E96_RS18075;product=lipoprotein insertase outer membrane protein LolB;protein_id=WP_000174484.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	65885	66736	.	+	.	ID=gene-C9E96_RS18080;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=C9E96_RS18080;old_locus_tag=C9E96_18560
NZ_PYJX01000188.1	Protein Homology	CDS	65885	66736	.	+	0	ID=cds-WP_000988253.1;Parent=gene-C9E96_RS18080;Dbxref=GenBank:WP_000988253.1;Name=WP_000988253.1;Ontology_term=GO:0016114,GO:0050515;gbkey=CDS;gene=ispE;go_function=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity|0050515||IEA;go_process=terpenoid biosynthetic process|0016114||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460735.1;locus_tag=C9E96_RS18080;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=WP_000988253.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	67002	67949	.	+	.	ID=gene-C9E96_RS18085;Name=prs;gbkey=Gene;gene=prs;gene_biotype=protein_coding;locus_tag=C9E96_RS18085;old_locus_tag=C9E96_18565
NZ_PYJX01000188.1	Protein Homology	CDS	67002	67949	.	+	0	ID=cds-WP_001518537.1;Parent=gene-C9E96_RS18085;Dbxref=GenBank:WP_001518537.1;Name=WP_001518537.1;gbkey=CDS;gene=prs;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910407.1;locus_tag=C9E96_RS18085;product=ribose-phosphate diphosphokinase;protein_id=WP_001518537.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	68074	69759	.	+	.	ID=gene-C9E96_RS18090;Name=dauA;gbkey=Gene;gene=dauA;gene_biotype=protein_coding;locus_tag=C9E96_RS18090;old_locus_tag=C9E96_18570
NZ_PYJX01000188.1	Protein Homology	CDS	68074	69759	.	+	0	ID=cds-WP_080203669.1;Parent=gene-C9E96_RS18090;Dbxref=GenBank:WP_080203669.1;Name=WP_080203669.1;gbkey=CDS;gene=dauA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001525165.1;locus_tag=C9E96_RS18090;product=C4-dicarboxylic acid transporter DauA;protein_id=WP_080203669.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	69804	70082	.	-	.	ID=gene-C9E96_RS18095;Name=ychH;gbkey=Gene;gene=ychH;gene_biotype=protein_coding;locus_tag=C9E96_RS18095;old_locus_tag=C9E96_18575
NZ_PYJX01000188.1	Protein Homology	CDS	69804	70082	.	-	0	ID=cds-WP_000823878.1;Parent=gene-C9E96_RS18095;Dbxref=GenBank:WP_000823878.1;Name=WP_000823878.1;gbkey=CDS;gene=ychH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460738.1;locus_tag=C9E96_RS18095;product=stress-induced protein YchH;protein_id=WP_000823878.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	70358	70942	.	+	.	ID=gene-C9E96_RS18100;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=C9E96_RS18100;old_locus_tag=C9E96_18580
NZ_PYJX01000188.1	Protein Homology	CDS	70358	70942	.	+	0	ID=cds-WP_000985595.1;Parent=gene-C9E96_RS18100;Dbxref=GenBank:WP_000985595.1;Name=WP_000985595.1;Ontology_term=GO:0004045;gbkey=CDS;gene=pth;go_function=peptidyl-tRNA hydrolase activity|0004045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910438.1;locus_tag=C9E96_RS18100;product=aminoacyl-tRNA hydrolase;protein_id=WP_000985595.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	71059	72150	.	+	.	ID=gene-C9E96_RS18105;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=C9E96_RS18105;old_locus_tag=C9E96_18585
NZ_PYJX01000188.1	Protein Homology	CDS	71059	72150	.	+	0	ID=cds-WP_000505850.1;Parent=gene-C9E96_RS18105;Dbxref=GenBank:WP_000505850.1;Name=WP_000505850.1;Ontology_term=GO:0005524,GO:0005525,GO:0016887;gbkey=CDS;gene=ychF;go_function=ATP binding|0005524||IEA,GTP binding|0005525||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001538644.1;locus_tag=C9E96_RS18105;product=redox-regulated ATPase YchF;protein_id=WP_000505850.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	73037	73804	.	+	.	ID=gene-C9E96_RS18115;Name=C9E96_RS18115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18115;old_locus_tag=C9E96_18595
NZ_PYJX01000188.1	Protein Homology	CDS	73037	73804	.	+	0	ID=cds-WP_020898832.1;Parent=gene-C9E96_RS18115;Dbxref=GenBank:WP_020898832.1;Name=WP_020898832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001137288.1;locus_tag=C9E96_RS18115;product=hypothetical protein;protein_id=WP_020898832.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	74294	75559	.	-	.	ID=gene-C9E96_RS18120;Name=C9E96_RS18120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18120;old_locus_tag=C9E96_18600
NZ_PYJX01000188.1	Protein Homology	CDS	74294	75559	.	-	0	ID=cds-WP_080203668.1;Parent=gene-C9E96_RS18120;Dbxref=GenBank:WP_080203668.1;Name=WP_080203668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460741.1;locus_tag=C9E96_RS18120;product=DUF4427 domain-containing protein;protein_id=WP_080203668.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	76054	77172	.	+	.	ID=gene-C9E96_RS18125;Name=hyaA;gbkey=Gene;gene=hyaA;gene_biotype=protein_coding;locus_tag=C9E96_RS18125;old_locus_tag=C9E96_18605
NZ_PYJX01000188.1	Protein Homology	CDS	76054	77172	.	+	0	ID=cds-WP_135494475.1;Parent=gene-C9E96_RS18125;Dbxref=GenBank:WP_135494475.1;Name=WP_135494475.1;gbkey=CDS;gene=hyaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460742.1;locus_tag=C9E96_RS18125;product=hydrogenase 1 small subunit;protein_id=WP_135494475.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	77169	78962	.	+	.	ID=gene-C9E96_RS18130;Name=hyaB;gbkey=Gene;gene=hyaB;gene_biotype=protein_coding;locus_tag=C9E96_RS18130;old_locus_tag=C9E96_18610
NZ_PYJX01000188.1	Protein Homology	CDS	77169	78962	.	+	0	ID=cds-WP_000070984.1;Parent=gene-C9E96_RS18130;Dbxref=GenBank:WP_000070984.1;Name=WP_000070984.1;gbkey=CDS;gene=hyaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460743.1;locus_tag=C9E96_RS18130;product=Ni/Fe-hydrogenase large subunit;protein_id=WP_000070984.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	78981	79712	.	+	.	ID=gene-C9E96_RS18135;Name=hyaC;gbkey=Gene;gene=hyaC;gene_biotype=protein_coding;locus_tag=C9E96_RS18135;old_locus_tag=C9E96_18615
NZ_PYJX01000188.1	Protein Homology	CDS	78981	79712	.	+	0	ID=cds-WP_135494477.1;Parent=gene-C9E96_RS18135;Dbxref=GenBank:WP_135494477.1;Name=WP_135494477.1;gbkey=CDS;gene=hyaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460744.1;locus_tag=C9E96_RS18135;product=Ni/Fe-hydrogenase b-type cytochrome subunit;protein_id=WP_135494477.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	79709	80305	.	+	.	ID=gene-C9E96_RS18140;Name=hyaD;gbkey=Gene;gene=hyaD;gene_biotype=protein_coding;locus_tag=C9E96_RS18140;old_locus_tag=C9E96_18620
NZ_PYJX01000188.1	Protein Homology	CDS	79709	80305	.	+	0	ID=cds-WP_023254289.1;Parent=gene-C9E96_RS18140;Dbxref=GenBank:WP_023254289.1;Name=WP_023254289.1;gbkey=CDS;gene=hyaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460745.1;locus_tag=C9E96_RS18140;product=hydrogenase 1 maturation protease;protein_id=WP_023254289.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	80295	80699	.	+	.	ID=gene-C9E96_RS18145;Name=hyaE;gbkey=Gene;gene=hyaE;gene_biotype=protein_coding;locus_tag=C9E96_RS18145;old_locus_tag=C9E96_18625
NZ_PYJX01000188.1	Protein Homology	CDS	80295	80699	.	+	0	ID=cds-WP_001262580.1;Parent=gene-C9E96_RS18145;Dbxref=GenBank:WP_001262580.1;Name=WP_001262580.1;gbkey=CDS;gene=hyaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460746.1;locus_tag=C9E96_RS18145;product=hydrogenase-1 operon protein HyaE;protein_id=WP_001262580.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	80696	81544	.	+	.	ID=gene-C9E96_RS18150;Name=C9E96_RS18150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18150;old_locus_tag=C9E96_18630
NZ_PYJX01000188.1	Protein Homology	CDS	80696	81544	.	+	0	ID=cds-WP_000063377.1;Parent=gene-C9E96_RS18150;Dbxref=GenBank:WP_000063377.1;Name=WP_000063377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460747.1;locus_tag=C9E96_RS18150;product=hydrogenase expression/formation protein;protein_id=WP_000063377.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	81619	83163	.	+	.	ID=gene-C9E96_RS18155;Name=appC;gbkey=Gene;gene=appC;gene_biotype=protein_coding;locus_tag=C9E96_RS18155;old_locus_tag=C9E96_18635
NZ_PYJX01000188.1	Protein Homology	CDS	81619	83163	.	+	0	ID=cds-WP_000263613.1;Parent=gene-C9E96_RS18155;Dbxref=GenBank:WP_000263613.1;Name=WP_000263613.1;gbkey=CDS;gene=appC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460748.1;locus_tag=C9E96_RS18155;product=cytochrome bd-II oxidase subunit 1;protein_id=WP_000263613.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	83175	84311	.	+	.	ID=gene-C9E96_RS18160;Name=appB;gbkey=Gene;gene=appB;gene_biotype=protein_coding;locus_tag=C9E96_RS18160;old_locus_tag=C9E96_18640
NZ_PYJX01000188.1	Protein Homology	CDS	83175	84311	.	+	0	ID=cds-WP_000888110.1;Parent=gene-C9E96_RS18160;Dbxref=GenBank:WP_000888110.1;Name=WP_000888110.1;gbkey=CDS;gene=appB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460749.1;locus_tag=C9E96_RS18160;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_000888110.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	84324	84413	.	+	.	ID=gene-C9E96_RS18165;Name=cbdX;gbkey=Gene;gene=cbdX;gene_biotype=protein_coding;locus_tag=C9E96_RS18165;old_locus_tag=C9E96_18645
NZ_PYJX01000188.1	Protein Homology	CDS	84324	84413	.	+	0	ID=cds-WP_000270306.1;Parent=gene-C9E96_RS18165;Dbxref=GenBank:WP_000270306.1;Name=WP_000270306.1;gbkey=CDS;gene=cbdX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460750.1;locus_tag=C9E96_RS18165;product=cytochrome bd-II oxidase subunit CbdX;protein_id=WP_000270306.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	84808	86082	.	+	.	ID=gene-C9E96_RS18170;Name=C9E96_RS18170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18170;old_locus_tag=C9E96_18650
NZ_PYJX01000188.1	Protein Homology	CDS	84808	86082	.	+	0	ID=cds-WP_001526439.1;Parent=gene-C9E96_RS18170;Dbxref=GenBank:WP_001526439.1;Name=WP_001526439.1;Ontology_term=GO:0006520,GO:0000166,GO:0016639;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor|0016639||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122303.1;locus_tag=C9E96_RS18170;product=Glu/Leu/Phe/Val family dehydrogenase;protein_id=WP_001526439.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	pseudogene	86296	88008	.	+	.	ID=gene-C9E96_RS18175;Name=C9E96_RS18175;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS18175;old_locus_tag=C9E96_18655;pseudo=true
NZ_PYJX01000188.1	Protein Homology	CDS	86296	88008	.	+	0	ID=cds-C9E96_RS18175;Parent=gene-C9E96_RS18175;Note=internal stop;Ontology_term=GO:0005993,GO:0004555;gbkey=CDS;go_function=alpha%2Calpha-trehalase activity|0004555||IEA;go_process=trehalose catabolic process|0005993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460752.1;locus_tag=C9E96_RS18175;product=alpha%2Calpha-trehalase;pseudo=true;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	88071	88325	.	-	.	ID=gene-C9E96_RS18180;Name=C9E96_RS18180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18180;old_locus_tag=C9E96_18660
NZ_PYJX01000188.1	Protein Homology	CDS	88071	88325	.	-	0	ID=cds-WP_000511323.1;Parent=gene-C9E96_RS18180;Dbxref=GenBank:WP_000511323.1;Name=WP_000511323.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460753.1;locus_tag=C9E96_RS18180;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000511323.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	88494	89228	.	+	.	ID=gene-C9E96_RS18185;Name=ycgR;gbkey=Gene;gene=ycgR;gene_biotype=protein_coding;locus_tag=C9E96_RS18185;old_locus_tag=C9E96_18665
NZ_PYJX01000188.1	Protein Homology	CDS	88494	89228	.	+	0	ID=cds-WP_135494479.1;Parent=gene-C9E96_RS18185;Dbxref=GenBank:WP_135494479.1;Name=WP_135494479.1;Ontology_term=GO:0071945,GO:0035438;gbkey=CDS;gene=ycgR;go_function=cyclic-di-GMP binding|0035438||IEA;go_process=regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed|0071945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460754.1;locus_tag=C9E96_RS18185;product=flagellar brake protein YcgR;protein_id=WP_135494479.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	89242	89853	.	-	.	ID=gene-C9E96_RS18190;Name=emtA;gbkey=Gene;gene=emtA;gene_biotype=protein_coding;locus_tag=C9E96_RS18190;old_locus_tag=C9E96_18670
NZ_PYJX01000188.1	Protein Homology	CDS	89242	89853	.	-	0	ID=cds-WP_000776974.1;Parent=gene-C9E96_RS18190;Dbxref=GenBank:WP_000776974.1;Name=WP_000776974.1;gbkey=CDS;gene=emtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460755.1;locus_tag=C9E96_RS18190;product=membrane-bound lytic murein transglycosylase EmtA;protein_id=WP_000776974.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	90025	90939	.	+	.	ID=gene-C9E96_RS18195;Name=ldcA;gbkey=Gene;gene=ldcA;gene_biotype=protein_coding;locus_tag=C9E96_RS18195;old_locus_tag=C9E96_18675
NZ_PYJX01000188.1	Protein Homology	CDS	90025	90939	.	+	0	ID=cds-WP_000051613.1;Parent=gene-C9E96_RS18195;Dbxref=GenBank:WP_000051613.1;Name=WP_000051613.1;gbkey=CDS;gene=ldcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460756.1;locus_tag=C9E96_RS18195;product=muramoyltetrapeptide carboxypeptidase;protein_id=WP_000051613.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	pseudogene	91036	92751	.	+	.	ID=gene-C9E96_RS18200;Name=C9E96_RS18200;end_range=92751,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS18200;old_locus_tag=C9E96_18680;partial=true;pseudo=true
NZ_PYJX01000188.1	Protein Homology	CDS	91036	92751	.	+	0	ID=cds-C9E96_RS18200;Parent=gene-C9E96_RS18200;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006813,GO:0006884,GO:0055085,GO:0051139,GO:0016020;end_range=92751,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metal cation:proton antiporter activity|0051139||IEA;go_process=potassium ion transport|0006813||IEA,cell volume homeostasis|0006884||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF003714.0;locus_tag=C9E96_RS18200;partial=true;product=potassium/proton antiporter;pseudo=true;transl_table=11
NZ_PYJX01000188.1	RefSeq	pseudogene	92707	92799	.	-	.	ID=gene-C9E96_RS24560;Name=C9E96_RS24560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24560;partial=true;pseudo=true;start_range=.,92707
NZ_PYJX01000188.1	Protein Homology	CDS	92707	92799	.	-	0	ID=cds-C9E96_RS24560;Parent=gene-C9E96_RS24560;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049075.1;locus_tag=C9E96_RS24560;partial=true;product=hypothetical protein;pseudo=true;start_range=.,92707;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	92832	93902	.	-	.	ID=gene-C9E96_RS18205;Name=dadX;gbkey=Gene;gene=dadX;gene_biotype=protein_coding;locus_tag=C9E96_RS18205;old_locus_tag=C9E96_18685
NZ_PYJX01000188.1	Protein Homology	CDS	92832	93902	.	-	0	ID=cds-WP_000197905.1;Parent=gene-C9E96_RS18205;Dbxref=GenBank:WP_000197905.1;Name=WP_000197905.1;Ontology_term=GO:0006522,GO:0008784;gbkey=CDS;gene=dadX;go_function=alanine racemase activity|0008784||IEA;go_process=alanine metabolic process|0006522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460758.1;locus_tag=C9E96_RS18205;product=catabolic alanine racemase DadX;protein_id=WP_000197905.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	gene	93916	95214	.	-	.	ID=gene-C9E96_RS18210;Name=C9E96_RS18210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS18210;old_locus_tag=C9E96_18690
NZ_PYJX01000188.1	Protein Homology	CDS	93916	95214	.	-	0	ID=cds-WP_061378893.1;Parent=gene-C9E96_RS18210;Dbxref=GenBank:WP_061378893.1;Name=WP_061378893.1;Ontology_term=GO:0055130,GO:0008718,GO:0016491,GO:0071949;gbkey=CDS;go_function=D-amino-acid dehydrogenase activity|0008718||IEA,oxidoreductase activity|0016491||IEA,FAD binding|0071949||IEA;go_process=D-alanine catabolic process|0055130||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460759.1;locus_tag=C9E96_RS18210;product=D-amino acid dehydrogenase;protein_id=WP_061378893.1;transl_table=11
NZ_PYJX01000188.1	RefSeq	pseudogene	95537	96373	.	+	.	ID=gene-C9E96_RS18215;Name=C9E96_RS18215;end_range=96373,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS18215;old_locus_tag=C9E96_18695;partial=true;pseudo=true
NZ_PYJX01000188.1	Protein Homology	CDS	95537	96373	.	+	0	ID=cds-C9E96_RS18215;Parent=gene-C9E96_RS18215;Note=internal stop%3B incomplete%3B missing C-terminus;end_range=96373,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460760.3;locus_tag=C9E96_RS18215;partial=true;product=SpoVR family protein;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000141.1 1 25206
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000141.1	RefSeq	region	1	25206	.	+	.	ID=NZ_PYJX01000141.1:1..25206;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000141.1	RefSeq	gene	1	184	.	+	.	ID=gene-C9E96_RS12245;Name=C9E96_RS12245;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9E96_RS12245;old_locus_tag=C9E96_12550;partial=true;start_range=.,1
NZ_PYJX01000141.1	cmsearch	rRNA	1	184	.	+	.	ID=rna-C9E96_RS12245;Parent=gene-C9E96_RS12245;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS12245;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000141.1	cmsearch	exon	1	184	.	+	.	ID=exon-C9E96_RS12245-1;Parent=rna-C9E96_RS12245;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS12245;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYJX01000141.1	RefSeq	gene	381	496	.	+	.	ID=gene-C9E96_RS12250;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9E96_RS12250;old_locus_tag=C9E96_12555
NZ_PYJX01000141.1	cmsearch	rRNA	381	496	.	+	.	ID=rna-C9E96_RS12250;Parent=gene-C9E96_RS12250;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS12250;product=5S ribosomal RNA
NZ_PYJX01000141.1	cmsearch	exon	381	496	.	+	.	ID=exon-C9E96_RS12250-1;Parent=rna-C9E96_RS12250;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS12250;product=5S ribosomal RNA
NZ_PYJX01000141.1	RefSeq	gene	688	764	.	+	.	ID=gene-C9E96_RS12255;Name=C9E96_RS12255;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS12255;old_locus_tag=C9E96_12560
NZ_PYJX01000141.1	tRNAscan-SE	tRNA	688	764	.	+	.	ID=rna-C9E96_RS12255;Parent=gene-C9E96_RS12255;anticodon=(pos:722..724);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS12255;product=tRNA-Asp
NZ_PYJX01000141.1	tRNAscan-SE	exon	688	764	.	+	.	ID=exon-C9E96_RS12255-1;Parent=rna-C9E96_RS12255;anticodon=(pos:722..724);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS12255;product=tRNA-Asp
NZ_PYJX01000141.1	RefSeq	gene	929	1732	.	+	.	ID=gene-C9E96_RS12260;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=protein_coding;locus_tag=C9E96_RS12260;old_locus_tag=C9E96_12565
NZ_PYJX01000141.1	Protein Homology	CDS	929	1732	.	+	0	ID=cds-WP_000154871.1;Parent=gene-C9E96_RS12260;Dbxref=GenBank:WP_000154871.1;Name=WP_000154871.1;Ontology_term=GO:0047834;gbkey=CDS;gene=dkgB;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459253.1;locus_tag=C9E96_RS12260;product=2%2C5-didehydrogluconate reductase DkgB;protein_id=WP_000154871.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	1753	2667	.	-	.	ID=gene-C9E96_RS12265;Name=yafC;gbkey=Gene;gene=yafC;gene_biotype=protein_coding;locus_tag=C9E96_RS12265;old_locus_tag=C9E96_12570
NZ_PYJX01000141.1	Protein Homology	CDS	1753	2667	.	-	0	ID=cds-WP_135494247.1;Parent=gene-C9E96_RS12265;Dbxref=GenBank:WP_135494247.1;Name=WP_135494247.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yafC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459254.1;locus_tag=C9E96_RS12265;product=DNA-binding transcriptional regulator YafC;protein_id=WP_135494247.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	2772	3947	.	+	.	ID=gene-C9E96_RS12270;Name=C9E96_RS12270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12270;old_locus_tag=C9E96_12575
NZ_PYJX01000141.1	Protein Homology	CDS	2772	3947	.	+	0	ID=cds-WP_080204088.1;Parent=gene-C9E96_RS12270;Dbxref=GenBank:WP_080204088.1;Name=WP_080204088.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459255.1;locus_tag=C9E96_RS12270;product=MFS transporter;protein_id=WP_080204088.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	4079	4879	.	+	.	ID=gene-C9E96_RS12275;Name=C9E96_RS12275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12275;old_locus_tag=C9E96_12580
NZ_PYJX01000141.1	Protein Homology	CDS	4079	4879	.	+	0	ID=cds-WP_135494249.1;Parent=gene-C9E96_RS12275;Dbxref=GenBank:WP_135494249.1;Name=WP_135494249.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414745.1;locus_tag=C9E96_RS12275;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_135494249.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	4957	5727	.	+	.	ID=gene-C9E96_RS12280;Name=C9E96_RS12280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12280;old_locus_tag=C9E96_12585
NZ_PYJX01000141.1	Protein Homology	CDS	4957	5727	.	+	0	ID=cds-WP_000207241.1;Parent=gene-C9E96_RS12280;Dbxref=GenBank:WP_000207241.1;Name=WP_000207241.1;Ontology_term=GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459257.1;locus_tag=C9E96_RS12280;product=class I SAM-dependent methyltransferase;protein_id=WP_000207241.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	5783	7150	.	-	.	ID=gene-C9E96_RS12285;Name=mltD;gbkey=Gene;gene=mltD;gene_biotype=protein_coding;locus_tag=C9E96_RS12285;old_locus_tag=C9E96_12590
NZ_PYJX01000141.1	Protein Homology	CDS	5783	7150	.	-	0	ID=cds-WP_000644706.1;Parent=gene-C9E96_RS12285;Dbxref=GenBank:WP_000644706.1;Name=WP_000644706.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltD;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459258.1;locus_tag=C9E96_RS12285;product=murein transglycosylase D;protein_id=WP_000644706.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	7222	7977	.	-	.	ID=gene-C9E96_RS12290;Name=gloB;gbkey=Gene;gene=gloB;gene_biotype=protein_coding;locus_tag=C9E96_RS12290;old_locus_tag=C9E96_12595
NZ_PYJX01000141.1	Protein Homology	CDS	7222	7977	.	-	0	ID=cds-WP_001052773.1;Parent=gene-C9E96_RS12290;Dbxref=GenBank:WP_001052773.1;Name=WP_001052773.1;Ontology_term=GO:0019243,GO:0004416;gbkey=CDS;gene=gloB;go_function=hydroxyacylglutathione hydrolase activity|0004416||IEA;go_process=methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione|0019243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459259.1;locus_tag=C9E96_RS12290;product=hydroxyacylglutathione hydrolase;protein_id=WP_001052773.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	8012	8734	.	+	.	ID=gene-C9E96_RS12295;Name=C9E96_RS12295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12295;old_locus_tag=C9E96_12600
NZ_PYJX01000141.1	Protein Homology	CDS	8012	8734	.	+	0	ID=cds-WP_000801238.1;Parent=gene-C9E96_RS12295;Dbxref=GenBank:WP_000801238.1;Name=WP_000801238.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459260.1;locus_tag=C9E96_RS12295;product=class I SAM-dependent methyltransferase;protein_id=WP_000801238.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	8731	9198	.	-	.	ID=gene-C9E96_RS12300;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=C9E96_RS12300;old_locus_tag=C9E96_12605
NZ_PYJX01000141.1	Protein Homology	CDS	8731	9198	.	-	0	ID=cds-WP_000917872.1;Parent=gene-C9E96_RS12300;Dbxref=GenBank:WP_000917872.1;Name=WP_000917872.1;Ontology_term=GO:0003676,GO:0004523;gbkey=CDS;gene=rnhA;go_function=nucleic acid binding|0003676||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459261.1;locus_tag=C9E96_RS12300;product=ribonuclease HI;protein_id=WP_000917872.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	9262	9993	.	+	.	ID=gene-C9E96_RS12305;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=C9E96_RS12305;old_locus_tag=C9E96_12610
NZ_PYJX01000141.1	Protein Homology	CDS	9262	9993	.	+	0	ID=cds-WP_001670675.1;Parent=gene-C9E96_RS12305;Dbxref=GenBank:WP_001670675.1;Name=WP_001670675.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459262.1;locus_tag=C9E96_RS12305;product=DNA polymerase III subunit epsilon;protein_id=WP_001670675.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	10127	10203	.	+	.	ID=gene-C9E96_RS12310;Name=C9E96_RS12310;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS12310;old_locus_tag=C9E96_12615
NZ_PYJX01000141.1	tRNAscan-SE	tRNA	10127	10203	.	+	.	ID=rna-C9E96_RS12310;Parent=gene-C9E96_RS12310;anticodon=(pos:10161..10163);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS12310;product=tRNA-Asp
NZ_PYJX01000141.1	tRNAscan-SE	exon	10127	10203	.	+	.	ID=exon-C9E96_RS12310-1;Parent=rna-C9E96_RS12310;anticodon=(pos:10161..10163);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS12310;product=tRNA-Asp
NZ_PYJX01000141.1	RefSeq	gene	10523	11578	.	-	.	ID=gene-C9E96_RS12315;Name=C9E96_RS12315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12315;old_locus_tag=C9E96_12620
NZ_PYJX01000141.1	Protein Homology	CDS	10523	11578	.	-	0	ID=cds-WP_000367619.1;Parent=gene-C9E96_RS12315;Dbxref=GenBank:WP_000367619.1;Name=WP_000367619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459263.1;locus_tag=C9E96_RS12315;product=ImpA family type VI secretion system protein;protein_id=WP_000367619.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	11589	12584	.	-	.	ID=gene-C9E96_RS12320;Name=tssG;gbkey=Gene;gene=tssG;gene_biotype=protein_coding;locus_tag=C9E96_RS12320;old_locus_tag=C9E96_12625
NZ_PYJX01000141.1	Protein Homology	CDS	11589	12584	.	-	0	ID=cds-WP_000145239.1;Parent=gene-C9E96_RS12320;Dbxref=GenBank:WP_000145239.1;Name=WP_000145239.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssG;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459264.1;locus_tag=C9E96_RS12320;product=type VI secretion system baseplate subunit TssG;protein_id=WP_000145239.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	12581	14464	.	-	.	ID=gene-C9E96_RS12325;Name=tssF;gbkey=Gene;gene=tssF;gene_biotype=protein_coding;locus_tag=C9E96_RS12325;old_locus_tag=C9E96_12630
NZ_PYJX01000141.1	Protein Homology	CDS	12581	14464	.	-	0	ID=cds-WP_023238769.1;Parent=gene-C9E96_RS12325;Dbxref=GenBank:WP_023238769.1;Name=WP_023238769.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssF;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459265.1;locus_tag=C9E96_RS12325;product=type VI secretion system baseplate subunit TssF;protein_id=WP_023238769.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	14480	14974	.	-	.	ID=gene-C9E96_RS12330;Name=tssE;gbkey=Gene;gene=tssE;gene_biotype=protein_coding;locus_tag=C9E96_RS12330;old_locus_tag=C9E96_12635
NZ_PYJX01000141.1	Protein Homology	CDS	14480	14974	.	-	0	ID=cds-WP_000108007.1;Parent=gene-C9E96_RS12330;Dbxref=GenBank:WP_000108007.1;Name=WP_000108007.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssE;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459266.1;locus_tag=C9E96_RS12330;product=type VI secretion system baseplate subunit TssE;protein_id=WP_000108007.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	14971	15795	.	-	.	ID=gene-C9E96_RS12335;Name=C9E96_RS12335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12335;old_locus_tag=C9E96_12640
NZ_PYJX01000141.1	Protein Homology	CDS	14971	15795	.	-	0	ID=cds-WP_023994005.1;Parent=gene-C9E96_RS12335;Dbxref=GenBank:WP_023994005.1;Name=WP_023994005.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459267.1;locus_tag=C9E96_RS12335;product=type VI secretion system accessory protein TagJ;protein_id=WP_023994005.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	15782	16684	.	-	.	ID=gene-C9E96_RS12340;Name=tagK;gbkey=Gene;gene=tagK;gene_biotype=protein_coding;locus_tag=C9E96_RS12340;old_locus_tag=C9E96_12645
NZ_PYJX01000141.1	Protein Homology	CDS	15782	16684	.	-	0	ID=cds-WP_000806688.1;Parent=gene-C9E96_RS12340;Dbxref=GenBank:WP_000806688.1;Name=WP_000806688.1;gbkey=CDS;gene=tagK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459268.1;locus_tag=C9E96_RS12340;product=type VI secretion system-associated protein TagK;protein_id=WP_000806688.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	17052	19691	.	+	.	ID=gene-C9E96_RS12345;Name=tssH;gbkey=Gene;gene=tssH;gene_biotype=protein_coding;gene_synonym=clpV;locus_tag=C9E96_RS12345;old_locus_tag=C9E96_12650
NZ_PYJX01000141.1	Protein Homology	CDS	17052	19691	.	+	0	ID=cds-WP_023223892.1;Parent=gene-C9E96_RS12345;Dbxref=GenBank:WP_023223892.1;Name=WP_023223892.1;Ontology_term=GO:0033103,GO:0016887,GO:0033104;gbkey=CDS;gene=tssH;go_component=type VI protein secretion system complex|0033104||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459269.1;locus_tag=C9E96_RS12345;product=type VI secretion system ATPase TssH;protein_id=WP_023223892.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	19791	20333	.	+	.	ID=gene-C9E96_RS12350;Name=tssB;gbkey=Gene;gene=tssB;gene_biotype=protein_coding;locus_tag=C9E96_RS12350;old_locus_tag=C9E96_12655
NZ_PYJX01000141.1	Protein Homology	CDS	19791	20333	.	+	0	ID=cds-WP_000996817.1;Parent=gene-C9E96_RS12350;Dbxref=GenBank:WP_000996817.1;Name=WP_000996817.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssB;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459270.1;locus_tag=C9E96_RS12350;product=type VI secretion system contractile sheath small subunit;protein_id=WP_000996817.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	20357	21865	.	+	.	ID=gene-C9E96_RS12355;Name=tssC;gbkey=Gene;gene=tssC;gene_biotype=protein_coding;locus_tag=C9E96_RS12355;old_locus_tag=C9E96_12660
NZ_PYJX01000141.1	Protein Homology	CDS	20357	21865	.	+	0	ID=cds-WP_000013881.1;Parent=gene-C9E96_RS12355;Dbxref=GenBank:WP_000013881.1;Name=WP_000013881.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;gene=tssC;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459271.1;locus_tag=C9E96_RS12355;product=type VI secretion system contractile sheath large subunit;protein_id=WP_000013881.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	21918	22319	.	+	.	ID=gene-C9E96_RS12360;Name=C9E96_RS12360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12360;old_locus_tag=C9E96_12665
NZ_PYJX01000141.1	Protein Homology	CDS	21918	22319	.	+	0	ID=cds-WP_001147173.1;Parent=gene-C9E96_RS12360;Dbxref=GenBank:WP_001147173.1;Name=WP_001147173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001147173.1;locus_tag=C9E96_RS12360;product=BPSL0067 family protein;protein_id=WP_001147173.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	22291	22716	.	+	.	ID=gene-C9E96_RS12365;Name=C9E96_RS12365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12365;old_locus_tag=C9E96_12670
NZ_PYJX01000141.1	Protein Homology	CDS	22291	22716	.	+	0	ID=cds-WP_001171576.1;Parent=gene-C9E96_RS12365;Dbxref=GenBank:WP_001171576.1;Name=WP_001171576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001171576.1;locus_tag=C9E96_RS12365;product=STY0301 family protein;protein_id=WP_001171576.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	22953	23438	.	+	.	ID=gene-C9E96_RS12370;Name=C9E96_RS12370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12370;old_locus_tag=C9E96_12675
NZ_PYJX01000141.1	Protein Homology	CDS	22953	23438	.	+	0	ID=cds-WP_000312802.1;Parent=gene-C9E96_RS12370;Dbxref=GenBank:WP_000312802.1;Name=WP_000312802.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459274.1;locus_tag=C9E96_RS12370;product=Hcp family type VI secretion system effector;protein_id=WP_000312802.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	pseudogene	23506	23698	.	+	.	ID=gene-C9E96_RS24245;Name=C9E96_RS24245;end_range=23698,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24245;partial=true;pseudo=true
NZ_PYJX01000141.1	Protein Homology	CDS	23506	23698	.	+	0	ID=cds-C9E96_RS24245;Parent=gene-C9E96_RS24245;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=23698,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459278.1;locus_tag=C9E96_RS24245;partial=true;product=type VI secretion system lipoprotein TssJ;pseudo=true;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	23741	24226	.	+	.	ID=gene-C9E96_RS12375;Name=C9E96_RS12375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12375;old_locus_tag=C9E96_12680
NZ_PYJX01000141.1	Protein Homology	CDS	23741	24226	.	+	0	ID=cds-WP_001081550.1;Parent=gene-C9E96_RS12375;Dbxref=GenBank:WP_001081550.1;Name=WP_001081550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459275.1;locus_tag=C9E96_RS12375;product=type VI secretion system amidase effector protein Tae4;protein_id=WP_001081550.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	24211	24594	.	+	.	ID=gene-C9E96_RS12380;Name=C9E96_RS12380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12380;old_locus_tag=C9E96_12685
NZ_PYJX01000141.1	Protein Homology	CDS	24211	24594	.	+	0	ID=cds-WP_000379146.1;Parent=gene-C9E96_RS12380;Dbxref=GenBank:WP_000379146.1;Name=WP_000379146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459276.1;locus_tag=C9E96_RS12380;product=type VI secretion system amidase immunity protein Tai4;protein_id=WP_000379146.1;transl_table=11
NZ_PYJX01000141.1	RefSeq	gene	24737	25206	.	+	.	ID=gene-C9E96_RS12385;Name=C9E96_RS12385;end_range=25206,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12385;old_locus_tag=C9E96_12690;partial=true
NZ_PYJX01000141.1	Protein Homology	CDS	24737	25206	.	+	0	ID=cds-WP_135494251.1;Parent=gene-C9E96_RS12385;Dbxref=GenBank:WP_135494251.1;Name=WP_135494251.1;Ontology_term=GO:0033103;end_range=25206,.;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459274.1;locus_tag=C9E96_RS12385;partial=true;product=Hcp family type VI secretion system effector;protein_id=WP_135494251.1;transl_table=11
##sequence-region NZ_PYJX01000011.1 1 25129
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000011.1	RefSeq	region	1	25129	.	+	.	ID=NZ_PYJX01000011.1:1..25129;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000011.1	RefSeq	gene	1	437	.	-	.	ID=gene-C9E96_RS00670;Name=C9E96_RS00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00670;old_locus_tag=C9E96_00685;partial=true;start_range=.,1
NZ_PYJX01000011.1	Protein Homology	CDS	1	437	.	-	0	ID=cds-WP_135493719.1;Parent=gene-C9E96_RS00670;Dbxref=GenBank:WP_135493719.1;Name=WP_135493719.1;Ontology_term=GO:0035444,GO:0015099;gbkey=CDS;go_function=nickel cation transmembrane transporter activity|0015099||IEA;go_process=nickel cation transmembrane transport|0035444||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461941.1;locus_tag=C9E96_RS00670;partial=true;product=nickel/cobalt efflux transporter;protein_id=WP_135493719.1;start_range=.,1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	560	832	.	+	.	ID=gene-C9E96_RS00675;Name=rcnR;gbkey=Gene;gene=rcnR;gene_biotype=protein_coding;locus_tag=C9E96_RS00675;old_locus_tag=C9E96_00690
NZ_PYJX01000011.1	Protein Homology	CDS	560	832	.	+	0	ID=cds-WP_000019953.1;Parent=gene-C9E96_RS00675;Dbxref=GenBank:WP_000019953.1;Name=WP_000019953.1;gbkey=CDS;gene=rcnR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461940.1;locus_tag=C9E96_RS00675;product=Ni(II)/Co(II)-binding transcriptional repressor RcnR;protein_id=WP_000019953.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	863	2092	.	-	.	ID=gene-C9E96_RS00680;Name=C9E96_RS00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00680;old_locus_tag=C9E96_00695
NZ_PYJX01000011.1	Protein Homology	CDS	863	2092	.	-	0	ID=cds-WP_000036837.1;Parent=gene-C9E96_RS00680;Dbxref=GenBank:WP_000036837.1;Name=WP_000036837.1;Ontology_term=GO:0003333,GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transmembrane transport|0003333||IEA,amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461939.1;locus_tag=C9E96_RS00680;product=amino acid permease;protein_id=WP_000036837.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	2234	2689	.	-	.	ID=gene-C9E96_RS00685;Name=C9E96_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00685;old_locus_tag=C9E96_00700
NZ_PYJX01000011.1	Protein Homology	CDS	2234	2689	.	-	0	ID=cds-WP_047606495.1;Parent=gene-C9E96_RS00685;Dbxref=GenBank:WP_047606495.1;Name=WP_047606495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465480.1;locus_tag=C9E96_RS00685;product=multidrug/biocide efflux PACE transporter;protein_id=WP_047606495.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	2793	3656	.	+	.	ID=gene-C9E96_RS00690;Name=C9E96_RS00690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00690;old_locus_tag=C9E96_00705
NZ_PYJX01000011.1	Protein Homology	CDS	2793	3656	.	+	0	ID=cds-WP_001270769.1;Parent=gene-C9E96_RS00690;Dbxref=GenBank:WP_001270769.1;Name=WP_001270769.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461937.1;locus_tag=C9E96_RS00690;product=LysR family transcriptional regulator;protein_id=WP_001270769.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	3779	4957	.	+	.	ID=gene-C9E96_RS00695;Name=C9E96_RS00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00695;old_locus_tag=C9E96_00710
NZ_PYJX01000011.1	Protein Homology	CDS	3779	4957	.	+	0	ID=cds-WP_000665980.1;Parent=gene-C9E96_RS00695;Dbxref=GenBank:WP_000665980.1;Name=WP_000665980.1;Ontology_term=GO:0003985;gbkey=CDS;go_function=acetyl-CoA C-acetyltransferase activity|0003985||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461936.1;locus_tag=C9E96_RS00695;product=acetyl-CoA C-acetyltransferase;protein_id=WP_000665980.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	pseudogene	5387	6222	.	+	.	ID=gene-C9E96_RS00705;Name=kduI;gbkey=Gene;gene=kduI;gene_biotype=pseudogene;locus_tag=C9E96_RS00705;old_locus_tag=C9E96_00720;pseudo=true
NZ_PYJX01000011.1	Protein Homology	CDS	5387	6222	.	+	0	ID=cds-C9E96_RS00705;Parent=gene-C9E96_RS00705;Note=frameshifted;Ontology_term=GO:0045490,GO:0008697;gbkey=CDS;gene=kduI;go_function=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity|0008697||IEA;go_process=pectin catabolic process|0045490||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461935.1;locus_tag=C9E96_RS00705;product=5-dehydro-4-deoxy-D-glucuronate isomerase;pseudo=true;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	6279	7040	.	+	.	ID=gene-C9E96_RS00710;Name=kduD;gbkey=Gene;gene=kduD;gene_biotype=protein_coding;locus_tag=C9E96_RS00710;old_locus_tag=C9E96_00725
NZ_PYJX01000011.1	Protein Homology	CDS	6279	7040	.	+	0	ID=cds-WP_080219635.1;Parent=gene-C9E96_RS00710;Dbxref=GenBank:WP_080219635.1;Name=WP_080219635.1;Ontology_term=GO:0000272,GO:0016491,GO:0051287;gbkey=CDS;gene=kduD;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461934.1;locus_tag=C9E96_RS00710;product=2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;protein_id=WP_080219635.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	7394	8812	.	+	.	ID=gene-C9E96_RS00715;Name=araE;gbkey=Gene;gene=araE;gene_biotype=protein_coding;locus_tag=C9E96_RS00715;old_locus_tag=C9E96_00730
NZ_PYJX01000011.1	Protein Homology	CDS	7394	8812	.	+	0	ID=cds-WP_000253650.1;Parent=gene-C9E96_RS00715;Dbxref=GenBank:WP_000253650.1;Name=WP_000253650.1;gbkey=CDS;gene=araE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461933.1;locus_tag=C9E96_RS00715;product=arabinose-proton symporter AraE;protein_id=WP_000253650.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	8925	9632	.	+	.	ID=gene-C9E96_RS00720;Name=C9E96_RS00720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00720;old_locus_tag=C9E96_00735
NZ_PYJX01000011.1	Protein Homology	CDS	8925	9632	.	+	0	ID=cds-WP_000848631.1;Parent=gene-C9E96_RS00720;Dbxref=GenBank:WP_000848631.1;Name=WP_000848631.1;Ontology_term=GO:0008152,GO:0016855;gbkey=CDS;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461932.1;locus_tag=C9E96_RS00720;product=aspartate/glutamate racemase;protein_id=WP_000848631.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	9604	10539	.	-	.	ID=gene-C9E96_RS00725;Name=C9E96_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00725;old_locus_tag=C9E96_00740
NZ_PYJX01000011.1	Protein Homology	CDS	9604	10539	.	-	0	ID=cds-WP_135493721.1;Parent=gene-C9E96_RS00725;Dbxref=GenBank:WP_135493721.1;Name=WP_135493721.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461931.1;locus_tag=C9E96_RS00725;product=LysR family transcriptional regulator;protein_id=WP_135493721.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	10657	11919	.	+	.	ID=gene-C9E96_RS00730;Name=lysA;gbkey=Gene;gene=lysA;gene_biotype=protein_coding;locus_tag=C9E96_RS00730;old_locus_tag=C9E96_00745
NZ_PYJX01000011.1	Protein Homology	CDS	10657	11919	.	+	0	ID=cds-WP_080219634.1;Parent=gene-C9E96_RS00730;Dbxref=GenBank:WP_080219634.1;Name=WP_080219634.1;Ontology_term=GO:0009089,GO:0008836;gbkey=CDS;gene=lysA;go_function=diaminopimelate decarboxylase activity|0008836||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461930.1;locus_tag=C9E96_RS00730;product=diaminopimelate decarboxylase;protein_id=WP_080219634.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	11929	12951	.	-	.	ID=gene-C9E96_RS00735;Name=C9E96_RS00735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00735;old_locus_tag=C9E96_00750
NZ_PYJX01000011.1	Protein Homology	CDS	11929	12951	.	-	0	ID=cds-WP_079788052.1;Parent=gene-C9E96_RS00735;Dbxref=GenBank:WP_079788052.1;Name=WP_079788052.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000968342.1;locus_tag=C9E96_RS00735;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_079788052.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	12962	13990	.	-	.	ID=gene-C9E96_RS00740;Name=galR;gbkey=Gene;gene=galR;gene_biotype=protein_coding;locus_tag=C9E96_RS00740;old_locus_tag=C9E96_00755
NZ_PYJX01000011.1	Protein Homology	CDS	12962	13990	.	-	0	ID=cds-WP_000201028.1;Parent=gene-C9E96_RS00740;Dbxref=GenBank:WP_000201028.1;Name=WP_000201028.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=galR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461928.1;locus_tag=C9E96_RS00740;product=HTH-type transcriptional regulator GalR;protein_id=WP_000201028.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	14573	16732	.	+	.	ID=gene-C9E96_RS00755;Name=aas;gbkey=Gene;gene=aas;gene_biotype=protein_coding;locus_tag=C9E96_RS00755;old_locus_tag=C9E96_00770
NZ_PYJX01000011.1	Protein Homology	CDS	14573	16732	.	+	0	ID=cds-WP_023204006.1;Parent=gene-C9E96_RS00755;Dbxref=GenBank:WP_023204006.1;Name=WP_023204006.1;Ontology_term=GO:0006631,GO:0008654,GO:0008779,GO:0008922;gbkey=CDS;gene=aas;go_function=acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity|0008779||IEA,long-chain fatty acid [acyl-carrier-protein] ligase activity|0008922||IEA;go_process=fatty acid metabolic process|0006631||IEA,phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461927.1;locus_tag=C9E96_RS00755;product=bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase;protein_id=WP_023204006.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	16725	17927	.	+	.	ID=gene-C9E96_RS00760;Name=lplT;gbkey=Gene;gene=lplT;gene_biotype=protein_coding;locus_tag=C9E96_RS00760;old_locus_tag=C9E96_00775
NZ_PYJX01000011.1	Protein Homology	CDS	16725	17927	.	+	0	ID=cds-WP_000004686.1;Parent=gene-C9E96_RS00760;Dbxref=GenBank:WP_000004686.1;Name=WP_000004686.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=lplT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461926.1;locus_tag=C9E96_RS00760;product=lysophospholipid transporter LplT;protein_id=WP_000004686.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	18014	19054	.	-	.	ID=gene-C9E96_RS00765;Name=C9E96_RS00765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00765;old_locus_tag=C9E96_00780
NZ_PYJX01000011.1	Protein Homology	CDS	18014	19054	.	-	0	ID=cds-WP_000558960.1;Parent=gene-C9E96_RS00765;Dbxref=GenBank:WP_000558960.1;Name=WP_000558960.1;Ontology_term=GO:0047834;gbkey=CDS;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461925.1;locus_tag=C9E96_RS00765;product=NADP(H)-dependent aldo-keto reductase;protein_id=WP_000558960.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	19245	19463	.	-	.	ID=gene-C9E96_RS00770;Name=C9E96_RS00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00770;old_locus_tag=C9E96_00785
NZ_PYJX01000011.1	Protein Homology	CDS	19245	19463	.	-	0	ID=cds-WP_000758662.1;Parent=gene-C9E96_RS00770;Dbxref=GenBank:WP_000758662.1;Name=WP_000758662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461924.1;locus_tag=C9E96_RS00770;product=YgdI/YgdR family lipoprotein;protein_id=WP_000758662.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	19633	20346	.	-	.	ID=gene-C9E96_RS00775;Name=C9E96_RS00775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00775;old_locus_tag=C9E96_00790
NZ_PYJX01000011.1	Protein Homology	CDS	19633	20346	.	-	0	ID=cds-WP_000895635.1;Parent=gene-C9E96_RS00775;Dbxref=GenBank:WP_000895635.1;Name=WP_000895635.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461923.1;locus_tag=C9E96_RS00775;product=TerC family protein;protein_id=WP_000895635.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	20528	21223	.	-	.	ID=gene-C9E96_RS00780;Name=mutH;gbkey=Gene;gene=mutH;gene_biotype=protein_coding;locus_tag=C9E96_RS00780;old_locus_tag=C9E96_00795
NZ_PYJX01000011.1	Protein Homology	CDS	20528	21223	.	-	0	ID=cds-WP_001274930.1;Parent=gene-C9E96_RS00780;Dbxref=GenBank:WP_001274930.1;Name=WP_001274930.1;Ontology_term=GO:0006304,GO:0004519;gbkey=CDS;gene=mutH;go_function=endonuclease activity|0004519||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461922.1;locus_tag=C9E96_RS00780;product=DNA mismatch repair endonuclease MutH;protein_id=WP_001274930.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	21906	22436	.	+	.	ID=gene-C9E96_RS00785;Name=rppH;gbkey=Gene;gene=rppH;gene_biotype=protein_coding;locus_tag=C9E96_RS00785;old_locus_tag=C9E96_00800
NZ_PYJX01000011.1	Protein Homology	CDS	21906	22436	.	+	0	ID=cds-WP_000564481.1;Parent=gene-C9E96_RS00785;Dbxref=GenBank:WP_000564481.1;Name=WP_000564481.1;Ontology_term=GO:0016787;gbkey=CDS;gene=rppH;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001655775.1;locus_tag=C9E96_RS00785;product=RNA pyrophosphohydrolase;protein_id=WP_000564481.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	22449	24695	.	+	.	ID=gene-C9E96_RS00790;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=C9E96_RS00790;old_locus_tag=C9E96_00805
NZ_PYJX01000011.1	Protein Homology	CDS	22449	24695	.	+	0	ID=cds-WP_000957888.1;Parent=gene-C9E96_RS00790;Dbxref=GenBank:WP_000957888.1;Name=WP_000957888.1;gbkey=CDS;gene=ptsP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461920.1;locus_tag=C9E96_RS00790;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_000957888.1;transl_table=11
NZ_PYJX01000011.1	RefSeq	gene	24911	25129	.	+	.	ID=gene-C9E96_RS00795;Name=C9E96_RS00795;end_range=25129,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00795;old_locus_tag=C9E96_00810;partial=true
NZ_PYJX01000011.1	Protein Homology	CDS	24911	25129	.	+	0	ID=cds-WP_210114513.1;Parent=gene-C9E96_RS00795;Dbxref=GenBank:WP_210114513.1;Name=WP_210114513.1;Ontology_term=GO:0042158,GO:0008961,GO:0005886;end_range=25129,.;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=lipoprotein biosynthetic process|0042158||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461919.1;locus_tag=C9E96_RS00795;partial=true;product=prolipoprotein diacylglyceryl transferase family protein;protein_id=WP_210114513.1;transl_table=11
##sequence-region NZ_PYJX01000090.1 1 24730
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000090.1	RefSeq	region	1	24730	.	+	.	ID=NZ_PYJX01000090.1:1..24730;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000090.1	RefSeq	gene	1	2622	.	+	.	ID=gene-C9E96_RS07985;Name=C9E96_RS07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07985;old_locus_tag=C9E96_08180;partial=true;start_range=.,1
NZ_PYJX01000090.1	Protein Homology	CDS	1	2622	.	+	0	ID=cds-WP_135494072.1;Parent=gene-C9E96_RS07985;Dbxref=GenBank:WP_135494072.1;Name=WP_135494072.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462381.1;locus_tag=C9E96_RS07985;partial=true;product=autotransporter domain-containing protein;protein_id=WP_135494072.1;start_range=.,1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	2815	2985	.	+	.	ID=gene-C9E96_RS07990;Name=C9E96_RS07990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07990;old_locus_tag=C9E96_08185
NZ_PYJX01000090.1	Protein Homology	CDS	2815	2985	.	+	0	ID=cds-WP_000472323.1;Parent=gene-C9E96_RS07990;Dbxref=GenBank:WP_000472323.1;Name=WP_000472323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462383.1;locus_tag=C9E96_RS07990;product=YhfL family protein;protein_id=WP_000472323.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	3130	4134	.	-	.	ID=gene-C9E96_RS07995;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=C9E96_RS07995;old_locus_tag=C9E96_08190
NZ_PYJX01000090.1	Protein Homology	CDS	3130	4134	.	-	0	ID=cds-WP_000165562.1;Parent=gene-C9E96_RS07995;Dbxref=GenBank:WP_000165562.1;Name=WP_000165562.1;Ontology_term=GO:0006436,GO:0000166,GO:0004830,GO:0005524;gbkey=CDS;gene=trpS;go_function=nucleotide binding|0000166||IEA,tryptophan-tRNA ligase activity|0004830||IEA,ATP binding|0005524||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462384.1;locus_tag=C9E96_RS07995;product=tryptophan--tRNA ligase;protein_id=WP_000165562.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	4127	4885	.	-	.	ID=gene-C9E96_RS08000;Name=gph;gbkey=Gene;gene=gph;gene_biotype=protein_coding;locus_tag=C9E96_RS08000;old_locus_tag=C9E96_08195
NZ_PYJX01000090.1	Protein Homology	CDS	4127	4885	.	-	0	ID=cds-WP_023993872.1;Parent=gene-C9E96_RS08000;Dbxref=GenBank:WP_023993872.1;Name=WP_023993872.1;Ontology_term=GO:0005975,GO:0008967;gbkey=CDS;gene=gph;go_function=phosphoglycolate phosphatase activity|0008967||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462385.1;locus_tag=C9E96_RS08000;product=phosphoglycolate phosphatase;protein_id=WP_023993872.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	4878	5555	.	-	.	ID=gene-C9E96_RS08005;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=C9E96_RS08005;old_locus_tag=C9E96_08200
NZ_PYJX01000090.1	Protein Homology	CDS	4878	5555	.	-	0	ID=cds-WP_000816286.1;Parent=gene-C9E96_RS08005;Dbxref=GenBank:WP_000816286.1;Name=WP_000816286.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462386.1;locus_tag=C9E96_RS08005;product=ribulose-phosphate 3-epimerase;protein_id=WP_000816286.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	5573	6409	.	-	.	ID=gene-C9E96_RS08010;Name=dam;gbkey=Gene;gene=dam;gene_biotype=protein_coding;locus_tag=C9E96_RS08010;old_locus_tag=C9E96_08205
NZ_PYJX01000090.1	Protein Homology	CDS	5573	6409	.	-	0	ID=cds-WP_000742132.1;Parent=gene-C9E96_RS08010;Dbxref=GenBank:WP_000742132.1;Name=WP_000742132.1;Ontology_term=GO:0003676,GO:0009007;gbkey=CDS;gene=dam;go_function=nucleic acid binding|0003676||IEA,site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462387.1;locus_tag=C9E96_RS08010;product=adenine-specific DNA-methyltransferase;protein_id=WP_000742132.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	6590	7867	.	-	.	ID=gene-C9E96_RS08015;Name=damX;gbkey=Gene;gene=damX;gene_biotype=protein_coding;locus_tag=C9E96_RS08015;old_locus_tag=C9E96_08210
NZ_PYJX01000090.1	Protein Homology	CDS	6590	7867	.	-	0	ID=cds-WP_000343147.1;Parent=gene-C9E96_RS08015;Dbxref=GenBank:WP_000343147.1;Name=WP_000343147.1;Ontology_term=GO:0032506,GO:0042834;gbkey=CDS;gene=damX;go_function=peptidoglycan binding|0042834||IEA;go_process=cytokinetic process|0032506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462388.1;locus_tag=C9E96_RS08015;product=cell division protein DamX;protein_id=WP_000343147.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	7965	9053	.	-	.	ID=gene-C9E96_RS08020;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=C9E96_RS08020;old_locus_tag=C9E96_08215
NZ_PYJX01000090.1	Protein Homology	CDS	7965	9053	.	-	0	ID=cds-WP_000439820.1;Parent=gene-C9E96_RS08020;Dbxref=GenBank:WP_000439820.1;Name=WP_000439820.1;Ontology_term=GO:0009073,GO:0009423,GO:0003856,GO:0005737;gbkey=CDS;gene=aroB;go_component=cytoplasm|0005737||IEA;go_function=3-dehydroquinate synthase activity|0003856||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA,chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462389.1;locus_tag=C9E96_RS08020;product=3-dehydroquinate synthase;protein_id=WP_000439820.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	9110	9631	.	-	.	ID=gene-C9E96_RS08025;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=C9E96_RS08025;old_locus_tag=C9E96_08220
NZ_PYJX01000090.1	Protein Homology	CDS	9110	9631	.	-	0	ID=cds-WP_000818621.1;Parent=gene-C9E96_RS08025;Dbxref=GenBank:WP_000818621.1;Name=WP_000818621.1;gbkey=CDS;gene=aroK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004709337.1;locus_tag=C9E96_RS08025;product=shikimate kinase AroK;protein_id=WP_000818621.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	10096	11334	.	-	.	ID=gene-C9E96_RS08035;Name=hofQ;gbkey=Gene;gene=hofQ;gene_biotype=protein_coding;locus_tag=C9E96_RS08035;old_locus_tag=C9E96_08230
NZ_PYJX01000090.1	Protein Homology	CDS	10096	11334	.	-	0	ID=cds-WP_000832803.1;Parent=gene-C9E96_RS08035;Dbxref=GenBank:WP_000832803.1;Name=WP_000832803.1;Ontology_term=GO:0009306,GO:0019867;gbkey=CDS;gene=hofQ;go_component=outer membrane|0019867||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462391.1;locus_tag=C9E96_RS08035;product=DNA uptake porin HofQ;protein_id=WP_000832803.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	11249	11650	.	-	.	ID=gene-C9E96_RS08040;Name=C9E96_RS08040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08040;old_locus_tag=C9E96_08235
NZ_PYJX01000090.1	Protein Homology	CDS	11249	11650	.	-	0	ID=cds-WP_000648115.1;Parent=gene-C9E96_RS08040;Dbxref=GenBank:WP_000648115.1;Name=WP_000648115.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462392.1;locus_tag=C9E96_RS08040;product=HofP DNA utilization family protein;protein_id=WP_000648115.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	11640	12113	.	-	.	ID=gene-C9E96_RS08045;Name=C9E96_RS08045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08045;old_locus_tag=C9E96_08240
NZ_PYJX01000090.1	Protein Homology	CDS	11640	12113	.	-	0	ID=cds-WP_023181711.1;Parent=gene-C9E96_RS08045;Dbxref=GenBank:WP_023181711.1;Name=WP_023181711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462393.1;locus_tag=C9E96_RS08045;product=hypothetical protein;protein_id=WP_023181711.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	12097	12636	.	-	.	ID=gene-C9E96_RS08050;Name=C9E96_RS08050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08050;old_locus_tag=C9E96_08245
NZ_PYJX01000090.1	Protein Homology	CDS	12097	12636	.	-	0	ID=cds-WP_000951390.1;Parent=gene-C9E96_RS08050;Dbxref=GenBank:WP_000951390.1;Name=WP_000951390.1;Ontology_term=GO:0043107,GO:0043683;gbkey=CDS;go_process=type IV pilus-dependent motility|0043107||IEA,type IV pilus assembly|0043683||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462394.1;locus_tag=C9E96_RS08050;product=PilN domain-containing protein;protein_id=WP_000951390.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	12636	13415	.	-	.	ID=gene-C9E96_RS08055;Name=C9E96_RS08055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08055;old_locus_tag=C9E96_08250
NZ_PYJX01000090.1	Protein Homology	CDS	12636	13415	.	-	0	ID=cds-WP_000874748.1;Parent=gene-C9E96_RS08055;Dbxref=GenBank:WP_000874748.1;Name=WP_000874748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462395.1;locus_tag=C9E96_RS08055;product=hypothetical protein;protein_id=WP_000874748.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	13536	16088	.	+	.	ID=gene-C9E96_RS08060;Name=mrcA;gbkey=Gene;gene=mrcA;gene_biotype=protein_coding;locus_tag=C9E96_RS08060;old_locus_tag=C9E96_08255
NZ_PYJX01000090.1	Protein Homology	CDS	13536	16088	.	+	0	ID=cds-WP_000673819.1;Parent=gene-C9E96_RS08060;Dbxref=GenBank:WP_000673819.1;Name=WP_000673819.1;Ontology_term=GO:0008658;gbkey=CDS;gene=mrcA;go_function=penicillin binding|0008658||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312265.2;locus_tag=C9E96_RS08060;product=peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA;protein_id=WP_000673819.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	16184	16747	.	-	.	ID=gene-C9E96_RS08065;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=C9E96_RS08065;old_locus_tag=C9E96_08260
NZ_PYJX01000090.1	Protein Homology	CDS	16184	16747	.	-	0	ID=cds-WP_000045725.1;Parent=gene-C9E96_RS08065;Dbxref=GenBank:WP_000045725.1;Name=WP_000045725.1;Ontology_term=GO:0016787;gbkey=CDS;gene=nudE;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000045725.1;locus_tag=C9E96_RS08065;product=ADP compounds hydrolase NudE;protein_id=WP_000045725.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	17070	19202	.	+	.	ID=gene-C9E96_RS08070;Name=igaA;gbkey=Gene;gene=igaA;gene_biotype=protein_coding;locus_tag=C9E96_RS08070;old_locus_tag=C9E96_08265
NZ_PYJX01000090.1	Protein Homology	CDS	17070	19202	.	+	0	ID=cds-WP_135494074.1;Parent=gene-C9E96_RS08070;Dbxref=GenBank:WP_135494074.1;Name=WP_135494074.1;gbkey=CDS;gene=igaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462398.1;locus_tag=C9E96_RS08070;product=intracellular growth attenuator protein IgaA;protein_id=WP_135494074.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	19267	19935	.	+	.	ID=gene-C9E96_RS08075;Name=yrfG;gbkey=Gene;gene=yrfG;gene_biotype=protein_coding;locus_tag=C9E96_RS08075;old_locus_tag=C9E96_08270
NZ_PYJX01000090.1	Protein Homology	CDS	19267	19935	.	+	0	ID=cds-WP_023193854.1;Parent=gene-C9E96_RS08075;Dbxref=GenBank:WP_023193854.1;Name=WP_023193854.1;gbkey=CDS;gene=yrfG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006893127.1;locus_tag=C9E96_RS08075;product=GMP/IMP nucleotidase;protein_id=WP_023193854.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	19946	20347	.	+	.	ID=gene-C9E96_RS08080;Name=hslR;gbkey=Gene;gene=hslR;gene_biotype=protein_coding;locus_tag=C9E96_RS08080;old_locus_tag=C9E96_08275
NZ_PYJX01000090.1	Protein Homology	CDS	19946	20347	.	+	0	ID=cds-WP_000660719.1;Parent=gene-C9E96_RS08080;Dbxref=GenBank:WP_000660719.1;Name=WP_000660719.1;gbkey=CDS;gene=hslR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462400.1;locus_tag=C9E96_RS08080;product=ribosome-associated heat shock protein Hsp15;protein_id=WP_000660719.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	20372	21250	.	+	.	ID=gene-C9E96_RS08085;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=C9E96_RS08085;old_locus_tag=C9E96_08280
NZ_PYJX01000090.1	Protein Homology	CDS	20372	21250	.	+	0	ID=cds-WP_001135571.1;Parent=gene-C9E96_RS08085;Dbxref=GenBank:WP_001135571.1;Name=WP_001135571.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=hslO;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417860.2;locus_tag=C9E96_RS08085;product=Hsp33 family molecular chaperone HslO;protein_id=WP_001135571.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	21361	23070	.	-	.	ID=gene-C9E96_RS08090;Name=C9E96_RS08090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08090;old_locus_tag=C9E96_08285
NZ_PYJX01000090.1	Protein Homology	CDS	21361	23070	.	-	0	ID=cds-WP_135369821.1;Parent=gene-C9E96_RS08090;Dbxref=GenBank:WP_135369821.1;Name=WP_135369821.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462402.1;locus_tag=C9E96_RS08090;product=DUF4153 domain-containing protein;protein_id=WP_135369821.1;transl_table=11
NZ_PYJX01000090.1	RefSeq	gene	23450	24730	.	+	.	ID=gene-C9E96_RS08095;Name=pckA;end_range=24730,.;gbkey=Gene;gene=pckA;gene_biotype=protein_coding;locus_tag=C9E96_RS08095;old_locus_tag=C9E96_08290;partial=true
NZ_PYJX01000090.1	Protein Homology	CDS	23450	24730	.	+	0	ID=cds-WP_135494076.1;Parent=gene-C9E96_RS08095;Dbxref=GenBank:WP_135494076.1;Name=WP_135494076.1;Ontology_term=GO:0006094,GO:0004612;end_range=24730,.;gbkey=CDS;gene=pckA;go_function=phosphoenolpyruvate carboxykinase (ATP) activity|0004612||IEA;go_process=gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462403.2;locus_tag=C9E96_RS08095;partial=true;product=phosphoenolpyruvate carboxykinase (ATP);protein_id=WP_135494076.1;transl_table=11
##sequence-region NZ_PYJX01000143.1 1 24786
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000143.1	RefSeq	region	1	24786	.	+	.	ID=NZ_PYJX01000143.1:1..24786;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000143.1	RefSeq	gene	1	1240	.	-	.	ID=gene-C9E96_RS12635;Name=C9E96_RS12635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12635;old_locus_tag=C9E96_12945;partial=true;start_range=.,1
NZ_PYJX01000143.1	Protein Homology	CDS	1	1240	.	-	0	ID=cds-WP_135494263.1;Parent=gene-C9E96_RS12635;Dbxref=GenBank:WP_135494263.1;Name=WP_135494263.1;Ontology_term=GO:0004096,GO:0020037;gbkey=CDS;go_function=catalase activity|0004096||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460284.1;locus_tag=C9E96_RS12635;partial=true;product=catalase;protein_id=WP_135494263.1;start_range=.,1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	1457	1699	.	+	.	ID=gene-C9E96_RS12640;Name=cedA;gbkey=Gene;gene=cedA;gene_biotype=protein_coding;locus_tag=C9E96_RS12640;old_locus_tag=C9E96_12950
NZ_PYJX01000143.1	Protein Homology	CDS	1457	1699	.	+	0	ID=cds-WP_000977510.1;Parent=gene-C9E96_RS12640;Dbxref=GenBank:WP_000977510.1;Name=WP_000977510.1;gbkey=CDS;gene=cedA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460285.1;locus_tag=C9E96_RS12640;product=cell division activator CedA;protein_id=WP_000977510.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	1802	3193	.	-	.	ID=gene-C9E96_RS12645;Name=tcyP;gbkey=Gene;gene=tcyP;gene_biotype=protein_coding;locus_tag=C9E96_RS12645;old_locus_tag=C9E96_12955
NZ_PYJX01000143.1	Protein Homology	CDS	1802	3193	.	-	0	ID=cds-WP_001010662.1;Parent=gene-C9E96_RS12645;Dbxref=GenBank:WP_001010662.1;Name=WP_001010662.1;gbkey=CDS;gene=tcyP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120792.1;locus_tag=C9E96_RS12645;product=cystine/sulfocysteine:cation symporter;protein_id=WP_001010662.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	3330	3929	.	-	.	ID=gene-C9E96_RS12650;Name=C9E96_RS12650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12650;old_locus_tag=C9E96_12960
NZ_PYJX01000143.1	Protein Homology	CDS	3330	3929	.	-	0	ID=cds-WP_000505804.1;Parent=gene-C9E96_RS12650;Dbxref=GenBank:WP_000505804.1;Name=WP_000505804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460287.3;locus_tag=C9E96_RS12650;product=metal-dependent hydrolase;protein_id=WP_000505804.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	4067	4735	.	-	.	ID=gene-C9E96_RS12655;Name=hxpB;gbkey=Gene;gene=hxpB;gene_biotype=protein_coding;locus_tag=C9E96_RS12655;old_locus_tag=C9E96_12965
NZ_PYJX01000143.1	Protein Homology	CDS	4067	4735	.	-	0	ID=cds-WP_000106854.1;Parent=gene-C9E96_RS12655;Dbxref=GenBank:WP_000106854.1;Name=WP_000106854.1;gbkey=CDS;gene=hxpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460288.1;locus_tag=C9E96_RS12655;product=hexitol phosphatase HxpB;protein_id=WP_000106854.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	4884	5420	.	+	.	ID=gene-C9E96_RS12660;Name=C9E96_RS12660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12660;old_locus_tag=C9E96_12970
NZ_PYJX01000143.1	Protein Homology	CDS	4884	5420	.	+	0	ID=cds-WP_000222158.1;Parent=gene-C9E96_RS12660;Dbxref=GenBank:WP_000222158.1;Name=WP_000222158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460289.1;locus_tag=C9E96_RS12660;product=YniB family protein;protein_id=WP_000222158.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	5463	6323	.	-	.	ID=gene-C9E96_RS12665;Name=C9E96_RS12665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12665;old_locus_tag=C9E96_12975
NZ_PYJX01000143.1	Protein Homology	CDS	5463	6323	.	-	0	ID=cds-WP_000267686.1;Parent=gene-C9E96_RS12665;Dbxref=GenBank:WP_000267686.1;Name=WP_000267686.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460290.1;locus_tag=C9E96_RS12665;product=fructosamine kinase family protein;protein_id=WP_000267686.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	6430	6720	.	-	.	ID=gene-C9E96_RS12670;Name=ghoS;gbkey=Gene;gene=ghoS;gene_biotype=protein_coding;locus_tag=C9E96_RS12670;old_locus_tag=C9E96_12980
NZ_PYJX01000143.1	Protein Homology	CDS	6430	6720	.	-	0	ID=cds-WP_000146133.1;Parent=gene-C9E96_RS12670;Dbxref=GenBank:WP_000146133.1;Name=WP_000146133.1;Ontology_term=GO:0004521;gbkey=CDS;gene=ghoS;go_function=RNA endonuclease activity|0004521||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460291.1;locus_tag=C9E96_RS12670;product=type V toxin-antitoxin system endoribonuclease antitoxin GhoS;protein_id=WP_000146133.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	6817	7749	.	-	.	ID=gene-C9E96_RS12675;Name=pfkB;gbkey=Gene;gene=pfkB;gene_biotype=protein_coding;locus_tag=C9E96_RS12675;old_locus_tag=C9E96_12985
NZ_PYJX01000143.1	Protein Homology	CDS	6817	7749	.	-	0	ID=cds-WP_135494265.1;Parent=gene-C9E96_RS12675;Dbxref=GenBank:WP_135494265.1;Name=WP_135494265.1;Ontology_term=GO:0005975,GO:0016773;gbkey=CDS;gene=pfkB;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460292.1;locus_tag=C9E96_RS12675;product=6-phosphofructokinase II;protein_id=WP_135494265.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	8038	8796	.	+	.	ID=gene-C9E96_RS12680;Name=C9E96_RS12680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12680;old_locus_tag=C9E96_12990
NZ_PYJX01000143.1	Protein Homology	CDS	8038	8796	.	+	0	ID=cds-WP_000770981.1;Parent=gene-C9E96_RS12680;Dbxref=GenBank:WP_000770981.1;Name=WP_000770981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460293.1;locus_tag=C9E96_RS12680;product=DUF481 domain-containing protein;protein_id=WP_000770981.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	8845	9804	.	-	.	ID=gene-C9E96_RS12685;Name=C9E96_RS12685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12685;old_locus_tag=C9E96_12995
NZ_PYJX01000143.1	Protein Homology	CDS	8845	9804	.	-	0	ID=cds-WP_001046438.1;Parent=gene-C9E96_RS12685;Dbxref=GenBank:WP_001046438.1;Name=WP_001046438.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460294.1;locus_tag=C9E96_RS12685;product=lipid A deacylase LpxR family protein;protein_id=WP_001046438.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	9947	10261	.	+	.	ID=gene-C9E96_RS12690;Name=C9E96_RS12690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12690;old_locus_tag=C9E96_13000
NZ_PYJX01000143.1	Protein Homology	CDS	9947	10261	.	+	0	ID=cds-WP_000916617.1;Parent=gene-C9E96_RS12690;Dbxref=GenBank:WP_000916617.1;Name=WP_000916617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460295.1;locus_tag=C9E96_RS12690;product=hypothetical protein;protein_id=WP_000916617.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	10258	11112	.	+	.	ID=gene-C9E96_RS12695;Name=C9E96_RS12695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12695;old_locus_tag=C9E96_13005
NZ_PYJX01000143.1	Protein Homology	CDS	10258	11112	.	+	0	ID=cds-WP_001044093.1;Parent=gene-C9E96_RS12695;Dbxref=GenBank:WP_001044093.1;Name=WP_001044093.1;Ontology_term=GO:0003676,GO:0004519,GO:0046872;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460296.1;locus_tag=C9E96_RS12695;product=DNA/RNA non-specific endonuclease;protein_id=WP_001044093.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	11372	13300	.	+	.	ID=gene-C9E96_RS12700;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=C9E96_RS12700;old_locus_tag=C9E96_13010
NZ_PYJX01000143.1	Protein Homology	CDS	11372	13300	.	+	0	ID=cds-WP_001144226.1;Parent=gene-C9E96_RS12700;Dbxref=GenBank:WP_001144226.1;Name=WP_001144226.1;Ontology_term=GO:0006435,GO:0004829,GO:0005524,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA,ATP binding|0005524||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894721.1;locus_tag=C9E96_RS12700;product=threonine--tRNA ligase;protein_id=WP_001144226.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	13304	13846	.	+	.	ID=gene-C9E96_RS12705;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=C9E96_RS12705;old_locus_tag=C9E96_13015
NZ_PYJX01000143.1	Protein Homology	CDS	13304	13846	.	+	0	ID=cds-WP_001574431.1;Parent=gene-C9E96_RS12705;Dbxref=GenBank:WP_001574431.1;Name=WP_001574431.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310452.1;locus_tag=C9E96_RS12705;product=translation initiation factor IF-3;protein_id=WP_001574431.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	13942	14139	.	+	.	ID=gene-C9E96_RS12710;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=C9E96_RS12710;old_locus_tag=C9E96_13020
NZ_PYJX01000143.1	Protein Homology	CDS	13942	14139	.	+	0	ID=cds-WP_001124225.1;Parent=gene-C9E96_RS12710;Dbxref=GenBank:WP_001124225.1;Name=WP_001124225.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006708231.1;locus_tag=C9E96_RS12710;product=50S ribosomal protein L35;protein_id=WP_001124225.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	14190	14546	.	+	.	ID=gene-C9E96_RS12715;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=C9E96_RS12715;old_locus_tag=C9E96_13025
NZ_PYJX01000143.1	Protein Homology	CDS	14190	14546	.	+	0	ID=cds-WP_000124850.1;Parent=gene-C9E96_RS12715;Dbxref=GenBank:WP_000124850.1;Name=WP_000124850.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplT;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310450.1;locus_tag=C9E96_RS12715;product=50S ribosomal protein L20;protein_id=WP_000124850.1;transl_table=11
NZ_PYJX01000143.1	cmsearch	sequence_feature	14662	14785	.	+	.	ID=id-NZ_PYJX01000143.1:14662..14785;Dbxref=RFAM:RF01859;Note=Phe leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYJX01000143.1	RefSeq	gene	14667	14711	.	+	.	ID=gene-C9E96_RS12720;Name=pheM;gbkey=Gene;gene=pheM;gene_biotype=protein_coding;locus_tag=C9E96_RS12720;old_locus_tag=C9E96_13030
NZ_PYJX01000143.1	Protein Homology	CDS	14667	14711	.	+	0	ID=cds-WP_001386830.1;Parent=gene-C9E96_RS12720;Dbxref=GenBank:WP_001386830.1;Name=WP_001386830.1;Ontology_term=GO:0031556;gbkey=CDS;gene=pheM;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310449.1;locus_tag=C9E96_RS12720;product=pheST operon leader peptide PheM;protein_id=WP_001386830.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	14848	15831	.	+	.	ID=gene-C9E96_RS12725;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=C9E96_RS12725;old_locus_tag=C9E96_13035
NZ_PYJX01000143.1	Protein Homology	CDS	14848	15831	.	+	0	ID=cds-WP_000018570.1;Parent=gene-C9E96_RS12725;Dbxref=GenBank:WP_000018570.1;Name=WP_000018570.1;Ontology_term=GO:0006432,GO:0000166,GO:0004826,GO:0005524,GO:0005737;gbkey=CDS;gene=pheS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004851795.1;locus_tag=C9E96_RS12725;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_000018570.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	15847	18234	.	+	.	ID=gene-C9E96_RS12730;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=C9E96_RS12730;old_locus_tag=C9E96_13040
NZ_PYJX01000143.1	Protein Homology	CDS	15847	18234	.	+	0	ID=cds-WP_000672408.1;Parent=gene-C9E96_RS12730;Dbxref=GenBank:WP_000672408.1;Name=WP_000672408.1;Ontology_term=GO:0006432,GO:0000287,GO:0004826,GO:0005524;gbkey=CDS;gene=pheT;go_function=magnesium ion binding|0000287||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460304.1;locus_tag=C9E96_RS12730;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_000672408.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	18239	18538	.	+	.	ID=gene-C9E96_RS12735;Name=ihfA;gbkey=Gene;gene=ihfA;gene_biotype=protein_coding;locus_tag=C9E96_RS12735;old_locus_tag=C9E96_13045
NZ_PYJX01000143.1	Protein Homology	CDS	18239	18538	.	+	0	ID=cds-WP_001229266.1;Parent=gene-C9E96_RS12735;Dbxref=GenBank:WP_001229266.1;Name=WP_001229266.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677;gbkey=CDS;gene=ihfA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460305.1;locus_tag=C9E96_RS12735;product=integration host factor subunit alpha;protein_id=WP_001229266.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	18741	19721	.	+	.	ID=gene-C9E96_RS12740;Name=btuC;gbkey=Gene;gene=btuC;gene_biotype=protein_coding;locus_tag=C9E96_RS12740;old_locus_tag=C9E96_13050
NZ_PYJX01000143.1	Protein Homology	CDS	18741	19721	.	+	0	ID=cds-WP_000954982.1;Parent=gene-C9E96_RS12740;Dbxref=GenBank:WP_000954982.1;Name=WP_000954982.1;Ontology_term=GO:0005524,GO:0022857;gbkey=CDS;gene=btuC;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460306.1;locus_tag=C9E96_RS12740;product=vitamin B12 ABC transporter permease BtuC;protein_id=WP_000954982.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	19813	20364	.	+	.	ID=gene-C9E96_RS12745;Name=C9E96_RS12745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12745;old_locus_tag=C9E96_13055
NZ_PYJX01000143.1	Protein Homology	CDS	19813	20364	.	+	0	ID=cds-WP_001181565.1;Parent=gene-C9E96_RS12745;Dbxref=GenBank:WP_001181565.1;Name=WP_001181565.1;Ontology_term=GO:0006979,GO:0004602;gbkey=CDS;go_function=glutathione peroxidase activity|0004602||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460307.1;locus_tag=C9E96_RS12745;product=glutathione peroxidase;protein_id=WP_001181565.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	20364	21113	.	+	.	ID=gene-C9E96_RS12750;Name=btuD;gbkey=Gene;gene=btuD;gene_biotype=protein_coding;locus_tag=C9E96_RS12750;old_locus_tag=C9E96_13060
NZ_PYJX01000143.1	Protein Homology	CDS	20364	21113	.	+	0	ID=cds-WP_023220522.1;Parent=gene-C9E96_RS12750;Dbxref=GenBank:WP_023220522.1;Name=WP_023220522.1;Ontology_term=GO:0015889,GO:0005524;gbkey=CDS;gene=btuD;go_function=ATP binding|0005524||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460308.1;locus_tag=C9E96_RS12750;product=vitamin B12 ABC transporter ATP-binding protein BtuD;protein_id=WP_023220522.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	21190	21654	.	+	.	ID=gene-C9E96_RS12755;Name=C9E96_RS12755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12755;old_locus_tag=C9E96_13065
NZ_PYJX01000143.1	Protein Homology	CDS	21190	21654	.	+	0	ID=cds-WP_001213256.1;Parent=gene-C9E96_RS12755;Dbxref=GenBank:WP_001213256.1;Name=WP_001213256.1;Ontology_term=GO:0000270,GO:0006508,GO:0008233,GO:0008234,GO:0016787;gbkey=CDS;go_function=peptidase activity|0008233||IEA,cysteine-type peptidase activity|0008234||IEA,hydrolase activity|0016787||IEA;go_process=peptidoglycan metabolic process|0000270||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460309.1;locus_tag=C9E96_RS12755;product=C40 family peptidase;protein_id=WP_001213256.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	21968	22681	.	+	.	ID=gene-C9E96_RS12760;Name=ydiV;gbkey=Gene;gene=ydiV;gene_biotype=protein_coding;locus_tag=C9E96_RS12760;old_locus_tag=C9E96_13070
NZ_PYJX01000143.1	Protein Homology	CDS	21968	22681	.	+	0	ID=cds-WP_080203839.1;Parent=gene-C9E96_RS12760;Dbxref=GenBank:WP_080203839.1;Name=WP_080203839.1;gbkey=CDS;gene=ydiV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460310.1;locus_tag=C9E96_RS12760;product=anti-FlhDC factor YdiV;protein_id=WP_080203839.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	22743	24185	.	+	.	ID=gene-C9E96_RS12765;Name=selO;gbkey=Gene;gene=selO;gene_biotype=protein_coding;locus_tag=C9E96_RS12765;old_locus_tag=C9E96_13075
NZ_PYJX01000143.1	Protein Homology	CDS	22743	24185	.	+	0	ID=cds-WP_000175682.1;Parent=gene-C9E96_RS12765;Dbxref=GenBank:WP_000175682.1;Name=WP_000175682.1;Ontology_term=GO:0018117,GO:0005524,GO:0070733;gbkey=CDS;gene=selO;go_function=ATP binding|0005524||IEA,AMPylase activity|0070733||IEA;go_process=protein adenylylation|0018117||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460311.1;locus_tag=C9E96_RS12765;product=protein adenylyltransferase SelO;protein_id=WP_000175682.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	gene	24220	24411	.	-	.	ID=gene-C9E96_RS12770;Name=hemP;gbkey=Gene;gene=hemP;gene_biotype=protein_coding;locus_tag=C9E96_RS12770;old_locus_tag=C9E96_13080
NZ_PYJX01000143.1	Protein Homology	CDS	24220	24411	.	-	0	ID=cds-WP_000089115.1;Parent=gene-C9E96_RS12770;Dbxref=GenBank:WP_000089115.1;Name=WP_000089115.1;gbkey=CDS;gene=hemP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460312.1;locus_tag=C9E96_RS12770;product=hemin uptake protein HemP;protein_id=WP_000089115.1;transl_table=11
NZ_PYJX01000143.1	RefSeq	pseudogene	24568	24786	.	-	.	ID=gene-C9E96_RS12775;Name=C9E96_RS12775;end_range=24786,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS12775;old_locus_tag=C9E96_13085;partial=true;pseudo=true
NZ_PYJX01000143.1	Protein Homology	CDS	24568	24786	.	-	0	ID=cds-C9E96_RS12775;Parent=gene-C9E96_RS12775;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=24786,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017456563.1;locus_tag=C9E96_RS12775;partial=true;product=3-deoxy-7-phosphoheptulonate synthase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000113.1 1 23828
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000113.1	RefSeq	region	1	23828	.	+	.	ID=NZ_PYJX01000113.1:1..23828;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000113.1	RefSeq	pseudogene	1	103	.	-	.	ID=gene-C9E96_RS09580;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=pseudogene;locus_tag=C9E96_RS09580;old_locus_tag=C9E96_09800;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000113.1	Protein Homology	CDS	1	103	.	-	0	ID=cds-C9E96_RS09580;Parent=gene-C9E96_RS09580;Note=catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=leuD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124542.1;locus_tag=C9E96_RS09580;partial=true;product=3-isopropylmalate dehydratase small subunit;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	114	1514	.	-	.	ID=gene-C9E96_RS09585;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=C9E96_RS09585;old_locus_tag=C9E96_09805
NZ_PYJX01000113.1	Protein Homology	CDS	114	1514	.	-	0	ID=cds-WP_080203759.1;Parent=gene-C9E96_RS09585;Dbxref=GenBank:WP_080203759.1;Name=WP_080203759.1;Ontology_term=GO:0009098,GO:0003861,GO:0051539,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459116.1;locus_tag=C9E96_RS09585;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_080203759.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	1517	2608	.	-	.	ID=gene-C9E96_RS09590;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=C9E96_RS09590;old_locus_tag=C9E96_09810
NZ_PYJX01000113.1	Protein Homology	CDS	1517	2608	.	-	0	ID=cds-WP_001523171.1;Parent=gene-C9E96_RS09590;Dbxref=GenBank:WP_001523171.1;Name=WP_001523171.1;Ontology_term=GO:0009098,GO:0003862;gbkey=CDS;gene=leuB;go_function=3-isopropylmalate dehydrogenase activity|0003862||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124544.1;locus_tag=C9E96_RS09590;product=3-isopropylmalate dehydrogenase;protein_id=WP_001523171.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	2608	4179	.	-	.	ID=gene-C9E96_RS09595;Name=leuA;gbkey=Gene;gene=leuA;gene_biotype=protein_coding;locus_tag=C9E96_RS09595;old_locus_tag=C9E96_09815
NZ_PYJX01000113.1	Protein Homology	CDS	2608	4179	.	-	0	ID=cds-WP_000082819.1;Parent=gene-C9E96_RS09595;Dbxref=GenBank:WP_000082819.1;Name=WP_000082819.1;Ontology_term=GO:0019752,GO:0003852;gbkey=CDS;gene=leuA;go_function=2-isopropylmalate synthase activity|0003852||IEA;go_process=carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016831521.1;locus_tag=C9E96_RS09595;product=2-isopropylmalate synthase;protein_id=WP_000082819.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	4267	4353	.	-	.	ID=gene-C9E96_RS09600;Name=leuL;gbkey=Gene;gene=leuL;gene_biotype=protein_coding;locus_tag=C9E96_RS09600;old_locus_tag=C9E96_09820
NZ_PYJX01000113.1	Protein Homology	CDS	4267	4353	.	-	0	ID=cds-WP_001575587.1;Parent=gene-C9E96_RS09600;Dbxref=GenBank:WP_001575587.1;Name=WP_001575587.1;gbkey=CDS;gene=leuL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459119.1;locus_tag=C9E96_RS09600;product=leu operon leader peptide;protein_id=WP_001575587.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	5010	5954	.	+	.	ID=gene-C9E96_RS09605;Name=leuO;gbkey=Gene;gene=leuO;gene_biotype=protein_coding;locus_tag=C9E96_RS09605;old_locus_tag=C9E96_09825
NZ_PYJX01000113.1	Protein Homology	CDS	5010	5954	.	+	0	ID=cds-WP_135494152.1;Parent=gene-C9E96_RS09605;Dbxref=GenBank:WP_135494152.1;Name=WP_135494152.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=leuO;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459120.1;locus_tag=C9E96_RS09605;product=transcriptional regulator LeuO;protein_id=WP_135494152.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	6276	8000	.	+	.	ID=gene-C9E96_RS09610;Name=ilvI;gbkey=Gene;gene=ilvI;gene_biotype=protein_coding;locus_tag=C9E96_RS09610;old_locus_tag=C9E96_09830
NZ_PYJX01000113.1	Protein Homology	CDS	6276	8000	.	+	0	ID=cds-WP_023252985.1;Parent=gene-C9E96_RS09610;Dbxref=GenBank:WP_023252985.1;Name=WP_023252985.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvI;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020079613.1;locus_tag=C9E96_RS09610;product=acetolactate synthase 3 large subunit;protein_id=WP_023252985.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	8003	8494	.	+	.	ID=gene-C9E96_RS09615;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=C9E96_RS09615;old_locus_tag=C9E96_09835
NZ_PYJX01000113.1	Protein Homology	CDS	8003	8494	.	+	0	ID=cds-WP_001563086.1;Parent=gene-C9E96_RS09615;Dbxref=GenBank:WP_001563086.1;Name=WP_001563086.1;Ontology_term=GO:0009082,GO:1990610;gbkey=CDS;gene=ilvN;go_function=acetolactate synthase regulator activity|1990610||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001563086.1;locus_tag=C9E96_RS09615;product=acetolactate synthase small subunit;protein_id=WP_001563086.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	8778	9782	.	+	.	ID=gene-C9E96_RS09620;Name=cra;gbkey=Gene;gene=cra;gene_biotype=protein_coding;locus_tag=C9E96_RS09620;old_locus_tag=C9E96_09840
NZ_PYJX01000113.1	Protein Homology	CDS	8778	9782	.	+	0	ID=cds-WP_000762406.1;Parent=gene-C9E96_RS09620;Dbxref=GenBank:WP_000762406.1;Name=WP_000762406.1;Ontology_term=GO:0006355,GO:0009750,GO:0003677;gbkey=CDS;gene=cra;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to fructose|0009750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459123.1;locus_tag=C9E96_RS09620;product=catabolite repressor/activator;protein_id=WP_000762406.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	10388	10846	.	+	.	ID=gene-C9E96_RS09625;Name=mraZ;gbkey=Gene;gene=mraZ;gene_biotype=protein_coding;locus_tag=C9E96_RS09625;old_locus_tag=C9E96_09845
NZ_PYJX01000113.1	Protein Homology	CDS	10388	10846	.	+	0	ID=cds-WP_000488294.1;Parent=gene-C9E96_RS09625;Dbxref=GenBank:WP_000488294.1;Name=WP_000488294.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=mraZ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020325403.1;locus_tag=C9E96_RS09625;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=WP_000488294.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	10848	11789	.	+	.	ID=gene-C9E96_RS09630;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=C9E96_RS09630;old_locus_tag=C9E96_09850
NZ_PYJX01000113.1	Protein Homology	CDS	10848	11789	.	+	0	ID=cds-WP_000970444.1;Parent=gene-C9E96_RS09630;Dbxref=GenBank:WP_000970444.1;Name=WP_000970444.1;Ontology_term=GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124563.1;locus_tag=C9E96_RS09630;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=WP_000970444.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	11786	12151	.	+	.	ID=gene-C9E96_RS09635;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;locus_tag=C9E96_RS09635;old_locus_tag=C9E96_09855
NZ_PYJX01000113.1	Protein Homology	CDS	11786	12151	.	+	0	ID=cds-WP_000625651.1;Parent=gene-C9E96_RS09635;Dbxref=GenBank:WP_000625651.1;Name=WP_000625651.1;gbkey=CDS;gene=ftsL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000625658.1;locus_tag=C9E96_RS09635;product=cell division protein FtsL;protein_id=WP_000625651.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	12167	13933	.	+	.	ID=gene-C9E96_RS09640;Name=ftsI;gbkey=Gene;gene=ftsI;gene_biotype=protein_coding;locus_tag=C9E96_RS09640;old_locus_tag=C9E96_09860
NZ_PYJX01000113.1	Protein Homology	CDS	12167	13933	.	+	0	ID=cds-WP_000642235.1;Parent=gene-C9E96_RS09640;Dbxref=GenBank:WP_000642235.1;Name=WP_000642235.1;gbkey=CDS;gene=ftsI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000642204.1;locus_tag=C9E96_RS09640;product=peptidoglycan glycosyltransferase FtsI;protein_id=WP_000642235.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	13920	15407	.	+	.	ID=gene-C9E96_RS09645;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=C9E96_RS09645;old_locus_tag=C9E96_09865
NZ_PYJX01000113.1	Protein Homology	CDS	13920	15407	.	+	0	ID=cds-WP_080203758.1;Parent=gene-C9E96_RS09645;Dbxref=GenBank:WP_080203758.1;Name=WP_080203758.1;Ontology_term=GO:0008360,GO:0009058,GO:0051301,GO:0005524,GO:0016881;gbkey=CDS;gene=murE;go_function=ATP binding|0005524||IEA,acid-amino acid ligase activity|0016881||IEA;go_process=regulation of cell shape|0008360||IEA,biosynthetic process|0009058||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459128.1;locus_tag=C9E96_RS09645;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=WP_080203758.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	15404	16762	.	+	.	ID=gene-C9E96_RS09650;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=C9E96_RS09650;old_locus_tag=C9E96_09870
NZ_PYJX01000113.1	Protein Homology	CDS	15404	16762	.	+	0	ID=cds-WP_000626636.1;Parent=gene-C9E96_RS09650;Dbxref=GenBank:WP_000626636.1;Name=WP_000626636.1;Ontology_term=GO:0009058,GO:0071555,GO:0005524,GO:0047480;gbkey=CDS;gene=murF;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=biosynthetic process|0009058||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459129.1;locus_tag=C9E96_RS09650;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_000626636.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	16756	17838	.	+	.	ID=gene-C9E96_RS09655;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=C9E96_RS09655;old_locus_tag=C9E96_09875
NZ_PYJX01000113.1	Protein Homology	CDS	16756	17838	.	+	0	ID=cds-WP_000964141.1;Parent=gene-C9E96_RS09655;Dbxref=GenBank:WP_000964141.1;Name=WP_000964141.1;Ontology_term=GO:0009252,GO:0008963,GO:0016020;gbkey=CDS;gene=mraY;go_component=membrane|0016020||IEA;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124610.1;locus_tag=C9E96_RS09655;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_000964141.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	17841	19157	.	+	.	ID=gene-C9E96_RS09660;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=C9E96_RS09660;old_locus_tag=C9E96_09880
NZ_PYJX01000113.1	Protein Homology	CDS	17841	19157	.	+	0	ID=cds-WP_000796445.1;Parent=gene-C9E96_RS09660;Dbxref=GenBank:WP_000796445.1;Name=WP_000796445.1;Ontology_term=GO:0008360,GO:0009252,GO:0051301,GO:0005524,GO:0008764,GO:0005737;gbkey=CDS;gene=murD;go_component=cytoplasm|0005737||IEA;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124612.1;locus_tag=C9E96_RS09660;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=WP_000796445.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	19157	20401	.	+	.	ID=gene-C9E96_RS09665;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=C9E96_RS09665;old_locus_tag=C9E96_09885
NZ_PYJX01000113.1	Protein Homology	CDS	19157	20401	.	+	0	ID=cds-WP_135494154.1;Parent=gene-C9E96_RS09665;Dbxref=GenBank:WP_135494154.1;Name=WP_135494154.1;Ontology_term=GO:0051301;gbkey=CDS;gene=ftsW;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459132.1;locus_tag=C9E96_RS09665;product=cell division protein FtsW;protein_id=WP_135494154.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	20398	21465	.	+	.	ID=gene-C9E96_RS09670;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=C9E96_RS09670;old_locus_tag=C9E96_09890
NZ_PYJX01000113.1	Protein Homology	CDS	20398	21465	.	+	0	ID=cds-WP_135494156.1;Parent=gene-C9E96_RS09670;Dbxref=GenBank:WP_135494156.1;Name=WP_135494156.1;Ontology_term=GO:0009252,GO:0050511;gbkey=CDS;gene=murG;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459133.1;locus_tag=C9E96_RS09670;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=WP_135494156.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	21584	23059	.	+	.	ID=gene-C9E96_RS09675;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=C9E96_RS09675;old_locus_tag=C9E96_09895
NZ_PYJX01000113.1	Protein Homology	CDS	21584	23059	.	+	0	ID=cds-WP_001096072.1;Parent=gene-C9E96_RS09675;Dbxref=GenBank:WP_001096072.1;Name=WP_001096072.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459134.1;locus_tag=C9E96_RS09675;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_001096072.1;transl_table=11
NZ_PYJX01000113.1	RefSeq	gene	23052	23828	.	+	.	ID=gene-C9E96_RS09680;Name=C9E96_RS09680;end_range=23828,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS09680;old_locus_tag=C9E96_09900;partial=true
NZ_PYJX01000113.1	Protein Homology	CDS	23052	23828	.	+	0	ID=cds-WP_135494158.1;Parent=gene-C9E96_RS09680;Dbxref=GenBank:WP_135494158.1;Name=WP_135494158.1;Ontology_term=GO:0009252,GO:0005524,GO:0008716,GO:0046872;end_range=23828,.;gbkey=CDS;go_function=ATP binding|0005524||IEA,D-alanine-D-alanine ligase activity|0008716||IEA,metal ion binding|0046872||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459135.1;locus_tag=C9E96_RS09680;partial=true;product=D-alanine--D-alanine ligase;protein_id=WP_135494158.1;transl_table=11
##sequence-region NZ_PYJX01000149.1 1 23758
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000149.1	RefSeq	region	1	23758	.	+	.	ID=NZ_PYJX01000149.1:1..23758;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000149.1	RefSeq	gene	1	1823	.	+	.	ID=gene-C9E96_RS13195;Name=sbcC;gbkey=Gene;gene=sbcC;gene_biotype=protein_coding;locus_tag=C9E96_RS13195;old_locus_tag=C9E96_13510;partial=true;start_range=.,1
NZ_PYJX01000149.1	Protein Homology	CDS	1	1823	.	+	2	ID=cds-WP_135494292.1;Parent=gene-C9E96_RS13195;Dbxref=GenBank:WP_135494292.1;Name=WP_135494292.1;Ontology_term=GO:0006260,GO:0004527;gbkey=CDS;gene=sbcC;go_function=exonuclease activity|0004527||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459390.1;locus_tag=C9E96_RS13195;partial=true;product=exonuclease subunit SbcC;protein_id=WP_135494292.1;start_range=.,1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	1996	3168	.	+	.	ID=gene-C9E96_RS13200;Name=araJ;gbkey=Gene;gene=araJ;gene_biotype=protein_coding;locus_tag=C9E96_RS13200;old_locus_tag=C9E96_13515
NZ_PYJX01000149.1	Protein Homology	CDS	1996	3168	.	+	0	ID=cds-WP_000755630.1;Parent=gene-C9E96_RS13200;Dbxref=GenBank:WP_000755630.1;Name=WP_000755630.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=araJ;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459389.1;locus_tag=C9E96_RS13200;product=MFS transporter AraJ;protein_id=WP_000755630.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	3190	4098	.	-	.	ID=gene-C9E96_RS13205;Name=mak;gbkey=Gene;gene=mak;gene_biotype=protein_coding;locus_tag=C9E96_RS13205;old_locus_tag=C9E96_13520
NZ_PYJX01000149.1	Protein Homology	CDS	3190	4098	.	-	0	ID=cds-WP_001219270.1;Parent=gene-C9E96_RS13205;Dbxref=GenBank:WP_001219270.1;Name=WP_001219270.1;gbkey=CDS;gene=mak;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459388.1;locus_tag=C9E96_RS13205;product=fructokinase;protein_id=WP_001219270.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	4224	5135	.	+	.	ID=gene-C9E96_RS13210;Name=rdgC;gbkey=Gene;gene=rdgC;gene_biotype=protein_coding;locus_tag=C9E96_RS13210;old_locus_tag=C9E96_13525
NZ_PYJX01000149.1	Protein Homology	CDS	4224	5135	.	+	0	ID=cds-WP_000964305.1;Parent=gene-C9E96_RS13210;Dbxref=GenBank:WP_000964305.1;Name=WP_000964305.1;Ontology_term=GO:0006310;gbkey=CDS;gene=rdgC;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120935.1;locus_tag=C9E96_RS13210;product=recombination-associated protein RdgC;protein_id=WP_000964305.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	5173	5457	.	-	.	ID=gene-C9E96_RS13215;Name=ppnP;gbkey=Gene;gene=ppnP;gene_biotype=protein_coding;locus_tag=C9E96_RS13215;old_locus_tag=C9E96_13530
NZ_PYJX01000149.1	Protein Homology	CDS	5173	5457	.	-	0	ID=cds-WP_000941945.1;Parent=gene-C9E96_RS13215;Dbxref=GenBank:WP_000941945.1;Name=WP_000941945.1;gbkey=CDS;gene=ppnP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459386.1;locus_tag=C9E96_RS13215;product=pyrimidine/purine nucleoside phosphorylase;protein_id=WP_000941945.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	5528	6205	.	-	.	ID=gene-C9E96_RS13220;Name=C9E96_RS13220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13220;old_locus_tag=C9E96_13535
NZ_PYJX01000149.1	Protein Homology	CDS	5528	6205	.	-	0	ID=cds-WP_001276437.1;Parent=gene-C9E96_RS13220;Dbxref=GenBank:WP_001276437.1;Name=WP_001276437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459385.1;locus_tag=C9E96_RS13220;product=AroM family protein;protein_id=WP_001276437.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	6456	6647	.	-	.	ID=gene-C9E96_RS13225;Name=yaiA;gbkey=Gene;gene=yaiA;gene_biotype=protein_coding;locus_tag=C9E96_RS13225;old_locus_tag=C9E96_13540
NZ_PYJX01000149.1	Protein Homology	CDS	6456	6647	.	-	0	ID=cds-WP_001143161.1;Parent=gene-C9E96_RS13225;Dbxref=GenBank:WP_001143161.1;Name=WP_001143161.1;gbkey=CDS;gene=yaiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459384.1;locus_tag=C9E96_RS13225;product=protein YaiA;protein_id=WP_001143161.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	6674	7219	.	-	.	ID=gene-C9E96_RS13230;Name=aroL;gbkey=Gene;gene=aroL;gene_biotype=protein_coding;locus_tag=C9E96_RS13230;old_locus_tag=C9E96_13545
NZ_PYJX01000149.1	Protein Homology	CDS	6674	7219	.	-	0	ID=cds-WP_000983569.1;Parent=gene-C9E96_RS13230;Dbxref=GenBank:WP_000983569.1;Name=WP_000983569.1;Ontology_term=GO:0009073,GO:0004765;gbkey=CDS;gene=aroL;go_function=shikimate kinase activity|0004765||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459383.1;locus_tag=C9E96_RS13230;product=shikimate kinase AroL;protein_id=WP_000983569.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	7404	7859	.	-	.	ID=gene-C9E96_RS13235;Name=C9E96_RS13235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13235;old_locus_tag=C9E96_13550
NZ_PYJX01000149.1	Protein Homology	CDS	7404	7859	.	-	0	ID=cds-WP_080203937.1;Parent=gene-C9E96_RS13235;Dbxref=GenBank:WP_080203937.1;Name=WP_080203937.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459382.1;locus_tag=C9E96_RS13235;product=YaiI/YqxD family protein;protein_id=WP_080203937.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	7999	8808	.	+	.	ID=gene-C9E96_RS13240;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=C9E96_RS13240;old_locus_tag=C9E96_13555
NZ_PYJX01000149.1	Protein Homology	CDS	7999	8808	.	+	0	ID=cds-WP_000412193.1;Parent=gene-C9E96_RS13240;Dbxref=GenBank:WP_000412193.1;Name=WP_000412193.1;Ontology_term=GO:0006561,GO:0004735;gbkey=CDS;gene=proC;go_function=pyrroline-5-carboxylate reductase activity|0004735||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459381.1;locus_tag=C9E96_RS13240;product=pyrroline-5-carboxylate reductase;protein_id=WP_000412193.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	8823	9935	.	-	.	ID=gene-C9E96_RS13245;Name=adrA;gbkey=Gene;gene=adrA;gene_biotype=protein_coding;gene_synonym=dgcC;locus_tag=C9E96_RS13245;old_locus_tag=C9E96_13560
NZ_PYJX01000149.1	Protein Homology	CDS	8823	9935	.	-	0	ID=cds-WP_000484083.1;Parent=gene-C9E96_RS13245;Dbxref=GenBank:WP_000484083.1;Name=WP_000484083.1;gbkey=CDS;gene=adrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459380.1;locus_tag=C9E96_RS13245;product=diguanylate cyclase AdrA;protein_id=WP_000484083.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	10027	10347	.	-	.	ID=gene-C9E96_RS13250;Name=psiF;gbkey=Gene;gene=psiF;gene_biotype=protein_coding;locus_tag=C9E96_RS13250;old_locus_tag=C9E96_13565
NZ_PYJX01000149.1	Protein Homology	CDS	10027	10347	.	-	0	ID=cds-WP_023993788.1;Parent=gene-C9E96_RS13250;Dbxref=GenBank:WP_023993788.1;Name=WP_023993788.1;gbkey=CDS;gene=psiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459379.1;locus_tag=C9E96_RS13250;product=phosphate starvation-inducible protein PsiF;protein_id=WP_023993788.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	10700	10960	.	-	.	ID=gene-C9E96_RS13255;Name=iraP;gbkey=Gene;gene=iraP;gene_biotype=protein_coding;locus_tag=C9E96_RS13255;old_locus_tag=C9E96_13570
NZ_PYJX01000149.1	Protein Homology	CDS	10700	10960	.	-	0	ID=cds-WP_001518423.1;Parent=gene-C9E96_RS13255;Dbxref=GenBank:WP_001518423.1;Name=WP_001518423.1;gbkey=CDS;gene=iraP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748986.1;locus_tag=C9E96_RS13255;product=anti-adapter protein IraP;protein_id=WP_001518423.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	11257	12468	.	-	.	ID=gene-C9E96_RS13260;Name=C9E96_RS13260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13260;old_locus_tag=C9E96_13575
NZ_PYJX01000149.1	Protein Homology	CDS	11257	12468	.	-	0	ID=cds-WP_000446768.1;Parent=gene-C9E96_RS13260;Dbxref=GenBank:WP_000446768.1;Name=WP_000446768.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459377.1;locus_tag=C9E96_RS13260;product=multidrug efflux MFS transporter;protein_id=WP_000446768.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	12637	13350	.	-	.	ID=gene-C9E96_RS13265;Name=C9E96_RS13265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13265;old_locus_tag=C9E96_13580
NZ_PYJX01000149.1	Protein Homology	CDS	12637	13350	.	-	0	ID=cds-WP_000480794.1;Parent=gene-C9E96_RS13265;Dbxref=GenBank:WP_000480794.1;Name=WP_000480794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459376.1;locus_tag=C9E96_RS13265;product=extensin-like domain-containing protein;protein_id=WP_000480794.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	13428	14522	.	+	.	ID=gene-C9E96_RS13270;Name=ddlA;gbkey=Gene;gene=ddlA;gene_biotype=protein_coding;locus_tag=C9E96_RS13270;old_locus_tag=C9E96_13585
NZ_PYJX01000149.1	Protein Homology	CDS	13428	14522	.	+	0	ID=cds-WP_001096592.1;Parent=gene-C9E96_RS13270;Dbxref=GenBank:WP_001096592.1;Name=WP_001096592.1;Ontology_term=GO:0008716;gbkey=CDS;gene=ddlA;go_function=D-alanine-D-alanine ligase activity|0008716||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459375.1;locus_tag=C9E96_RS13270;product=D-alanine--D-alanine ligase;protein_id=WP_001096592.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	14548	14763	.	-	.	ID=gene-C9E96_RS13275;Name=C9E96_RS13275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13275;old_locus_tag=C9E96_13590
NZ_PYJX01000149.1	Protein Homology	CDS	14548	14763	.	-	0	ID=cds-WP_001239243.1;Parent=gene-C9E96_RS13275;Dbxref=GenBank:WP_001239243.1;Name=WP_001239243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459374.1;locus_tag=C9E96_RS13275;product=DUF2754 family protein;protein_id=WP_001239243.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	15031	15339	.	+	.	ID=gene-C9E96_RS13280;Name=C9E96_RS13280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13280;old_locus_tag=C9E96_13595
NZ_PYJX01000149.1	Protein Homology	CDS	15031	15339	.	+	0	ID=cds-WP_000763139.1;Parent=gene-C9E96_RS13280;Dbxref=GenBank:WP_000763139.1;Name=WP_000763139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459373.1;locus_tag=C9E96_RS13280;product=YaiY family protein;protein_id=WP_000763139.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	15377	16471	.	-	.	ID=gene-C9E96_RS13285;Name=yaiW;gbkey=Gene;gene=yaiW;gene_biotype=protein_coding;locus_tag=C9E96_RS13285;old_locus_tag=C9E96_13600
NZ_PYJX01000149.1	Protein Homology	CDS	15377	16471	.	-	0	ID=cds-WP_135494294.1;Parent=gene-C9E96_RS13285;Dbxref=GenBank:WP_135494294.1;Name=WP_135494294.1;gbkey=CDS;gene=yaiW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459372.1;locus_tag=C9E96_RS13285;product=surface-exposed outer membrane lipoprotein YaiW;protein_id=WP_135494294.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	16486	17706	.	-	.	ID=gene-C9E96_RS13290;Name=sbmA;gbkey=Gene;gene=sbmA;gene_biotype=protein_coding;locus_tag=C9E96_RS13290;old_locus_tag=C9E96_13605
NZ_PYJX01000149.1	Protein Homology	CDS	16486	17706	.	-	0	ID=cds-WP_000477024.1;Parent=gene-C9E96_RS13290;Dbxref=GenBank:WP_000477024.1;Name=WP_000477024.1;Ontology_term=GO:0015833,GO:1904680;gbkey=CDS;gene=sbmA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459371.1;locus_tag=C9E96_RS13290;product=peptide antibiotic transporter SbmA;protein_id=WP_000477024.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	18053	19210	.	+	.	ID=gene-C9E96_RS13300;Name=ampH;gbkey=Gene;gene=ampH;gene_biotype=protein_coding;locus_tag=C9E96_RS13300;old_locus_tag=C9E96_13615
NZ_PYJX01000149.1	Protein Homology	CDS	18053	19210	.	+	0	ID=cds-WP_000830777.1;Parent=gene-C9E96_RS13300;Dbxref=GenBank:WP_000830777.1;Name=WP_000830777.1;gbkey=CDS;gene=ampH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308453.1;locus_tag=C9E96_RS13300;product=D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH;protein_id=WP_000830777.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	19255	19878	.	-	.	ID=gene-C9E96_RS13305;Name=iprA;gbkey=Gene;gene=iprA;gene_biotype=protein_coding;locus_tag=C9E96_RS13305;old_locus_tag=C9E96_13620
NZ_PYJX01000149.1	Protein Homology	CDS	19255	19878	.	-	0	ID=cds-WP_000950242.1;Parent=gene-C9E96_RS13305;Dbxref=GenBank:WP_000950242.1;Name=WP_000950242.1;gbkey=CDS;gene=iprA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459369.1;locus_tag=C9E96_RS13305;product=hydrogen peroxide resistance inhibitor IprA;protein_id=WP_000950242.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	gene	19964	22849	.	-	.	ID=gene-C9E96_RS13310;Name=C9E96_RS13310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13310;old_locus_tag=C9E96_13625
NZ_PYJX01000149.1	Protein Homology	CDS	19964	22849	.	-	0	ID=cds-WP_023993790.1;Parent=gene-C9E96_RS13310;Dbxref=GenBank:WP_023993790.1;Name=WP_023993790.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459368.1;locus_tag=C9E96_RS13310;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_023993790.1;transl_table=11
NZ_PYJX01000149.1	RefSeq	pseudogene	23362	23758	.	+	.	ID=gene-C9E96_RS13315;Name=C9E96_RS13315;end_range=23758,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13315;old_locus_tag=C9E96_13630;partial=true;pseudo=true
NZ_PYJX01000149.1	Protein Homology	CDS	23362	23758	.	+	0	ID=cds-C9E96_RS13315;Parent=gene-C9E96_RS13315;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=23758,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459367.1;locus_tag=C9E96_RS13315;partial=true;product=porphobilinogen synthase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000125.1 1 23329
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000125.1	RefSeq	region	1	23329	.	+	.	ID=NZ_PYJX01000125.1:1..23329;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000125.1	RefSeq	gene	1	1215	.	+	.	ID=gene-C9E96_RS10700;Name=C9E96_RS10700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10700;old_locus_tag=C9E96_10950;partial=true;start_range=.,1
NZ_PYJX01000125.1	Protein Homology	CDS	1	1215	.	+	0	ID=cds-WP_135494188.1;Parent=gene-C9E96_RS10700;Dbxref=GenBank:WP_135494188.1;Name=WP_135494188.1;Ontology_term=GO:0071973,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461698.1;locus_tag=C9E96_RS10700;partial=true;product=flagellin;protein_id=WP_135494188.1;start_range=.,1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	1283	1822	.	+	.	ID=gene-C9E96_RS10705;Name=fljA;gbkey=Gene;gene=fljA;gene_biotype=protein_coding;locus_tag=C9E96_RS10705;old_locus_tag=C9E96_10955
NZ_PYJX01000125.1	Protein Homology	CDS	1283	1822	.	+	0	ID=cds-WP_023994244.1;Parent=gene-C9E96_RS10705;Dbxref=GenBank:WP_023994244.1;Name=WP_023994244.1;gbkey=CDS;gene=fljA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461697.1;locus_tag=C9E96_RS10705;product=phase 1 flagellin gene repressor FljA;protein_id=WP_023994244.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	pseudogene	1850	2071	.	+	.	ID=gene-C9E96_RS10710;Name=C9E96_RS10710;end_range=2071,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS10710;old_locus_tag=C9E96_10960;partial=true;pseudo=true;start_range=.,1850
NZ_PYJX01000125.1	Protein Homology	CDS	1850	2071	.	+	0	ID=cds-C9E96_RS10710;Parent=gene-C9E96_RS10710;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2071,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008784655.1;locus_tag=C9E96_RS10710;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,1850;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	2671	5004	.	-	.	ID=gene-C9E96_RS10715;Name=C9E96_RS10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10715;old_locus_tag=C9E96_10965
NZ_PYJX01000125.1	Protein Homology	CDS	2671	5004	.	-	0	ID=cds-WP_080204052.1;Parent=gene-C9E96_RS10715;Dbxref=GenBank:WP_080204052.1;Name=WP_080204052.1;Ontology_term=GO:0003899,GO:0004386,GO:0008270;gbkey=CDS;go_function=DNA-directed RNA polymerase activity|0003899||IEA,helicase activity|0004386||IEA,zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000783702.1;locus_tag=C9E96_RS10715;product=primase-helicase zinc-binding domain-containing protein;protein_id=WP_080204052.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	5019	5339	.	-	.	ID=gene-C9E96_RS10720;Name=C9E96_RS10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10720;old_locus_tag=C9E96_10970
NZ_PYJX01000125.1	Protein Homology	CDS	5019	5339	.	-	0	ID=cds-WP_000795388.1;Parent=gene-C9E96_RS10720;Dbxref=GenBank:WP_000795388.1;Name=WP_000795388.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224852.1;locus_tag=C9E96_RS10720;product=DUF5375 domain-containing protein;protein_id=WP_000795388.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	5336	5563	.	-	.	ID=gene-C9E96_RS10725;Name=C9E96_RS10725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10725;old_locus_tag=C9E96_10975
NZ_PYJX01000125.1	Protein Homology	CDS	5336	5563	.	-	0	ID=cds-WP_001216603.1;Parent=gene-C9E96_RS10725;Dbxref=GenBank:WP_001216603.1;Name=WP_001216603.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001216597.1;locus_tag=C9E96_RS10725;product=hypothetical protein;protein_id=WP_001216603.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	5560	6111	.	-	.	ID=gene-C9E96_RS10730;Name=C9E96_RS10730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10730;old_locus_tag=C9E96_10980
NZ_PYJX01000125.1	Protein Homology	CDS	5560	6111	.	-	0	ID=cds-WP_015701354.1;Parent=gene-C9E96_RS10730;Dbxref=GenBank:WP_015701354.1;Name=WP_015701354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364305.1;locus_tag=C9E96_RS10730;product=host cell division inhibitor Icd-like protein;protein_id=WP_015701354.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	6108	6374	.	-	.	ID=gene-C9E96_RS10735;Name=C9E96_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10735;old_locus_tag=C9E96_10985
NZ_PYJX01000125.1	Protein Homology	CDS	6108	6374	.	-	0	ID=cds-WP_000556594.1;Parent=gene-C9E96_RS10735;Dbxref=GenBank:WP_000556594.1;Name=WP_000556594.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224849.1;locus_tag=C9E96_RS10735;product=helix-turn-helix transcriptional regulator;protein_id=WP_000556594.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	6912	7649	.	+	.	ID=gene-C9E96_RS10750;Name=C9E96_RS10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10750;old_locus_tag=C9E96_10995
NZ_PYJX01000125.1	Protein Homology	CDS	6912	7649	.	+	0	ID=cds-WP_000149860.1;Parent=gene-C9E96_RS10750;Dbxref=GenBank:WP_000149860.1;Name=WP_000149860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016234818.1;locus_tag=C9E96_RS10750;product=hypothetical protein;protein_id=WP_000149860.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	7646	7888	.	+	.	ID=gene-C9E96_RS10755;Name=C9E96_RS10755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10755;old_locus_tag=C9E96_11000
NZ_PYJX01000125.1	Protein Homology	CDS	7646	7888	.	+	0	ID=cds-WP_000984209.1;Parent=gene-C9E96_RS10755;Dbxref=GenBank:WP_000984209.1;Name=WP_000984209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000984207.1;locus_tag=C9E96_RS10755;product=ogr/Delta-like zinc finger family protein;protein_id=WP_000984209.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	7905	8471	.	+	.	ID=gene-C9E96_RS10760;Name=C9E96_RS10760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10760;old_locus_tag=C9E96_11005
NZ_PYJX01000125.1	Protein Homology	CDS	7905	8471	.	+	0	ID=cds-WP_080204053.1;Parent=gene-C9E96_RS10760;Dbxref=GenBank:WP_080204053.1;Name=WP_080204053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000210078.1;locus_tag=C9E96_RS10760;product=phage polarity suppression protein;protein_id=WP_080204053.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	9003	10412	.	+	.	ID=gene-C9E96_RS10770;Name=C9E96_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10770;old_locus_tag=C9E96_11015
NZ_PYJX01000125.1	Protein Homology	CDS	9003	10412	.	+	0	ID=cds-WP_001604631.1;Parent=gene-C9E96_RS10770;Dbxref=GenBank:WP_001604631.1;Name=WP_001604631.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001604631.1;locus_tag=C9E96_RS10770;product=hypothetical protein;protein_id=WP_001604631.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	10449	11645	.	-	.	ID=gene-C9E96_RS10775;Name=C9E96_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10775;old_locus_tag=C9E96_11020
NZ_PYJX01000125.1	Protein Homology	CDS	10449	11645	.	-	0	ID=cds-WP_001604633.1;Parent=gene-C9E96_RS10775;Dbxref=GenBank:WP_001604633.1;Name=WP_001604633.1;Ontology_term=GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001604633.1;locus_tag=C9E96_RS10775;product=integrase domain-containing protein;protein_id=WP_001604633.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	11830	12192	.	-	.	ID=gene-C9E96_RS10780;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=C9E96_RS10780;old_locus_tag=C9E96_11025
NZ_PYJX01000125.1	cmsearch	tmRNA	11830	12192	.	-	.	ID=rna-C9E96_RS10780;Parent=gene-C9E96_RS10780;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS10780;product=transfer-messenger RNA
NZ_PYJX01000125.1	cmsearch	exon	11830	12192	.	-	.	ID=exon-C9E96_RS10780-1;Parent=rna-C9E96_RS10780;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS10780;product=transfer-messenger RNA
NZ_PYJX01000125.1	RefSeq	gene	12264	13427	.	-	.	ID=gene-C9E96_RS10785;Name=C9E96_RS10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10785;old_locus_tag=C9E96_11030
NZ_PYJX01000125.1	Protein Homology	CDS	12264	13427	.	-	0	ID=cds-WP_072095627.1;Parent=gene-C9E96_RS10785;Dbxref=GenBank:WP_072095627.1;Name=WP_072095627.1;Ontology_term=GO:0015031,GO:0030253,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein secretion by the type I secretion system|0030253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461621.1;locus_tag=C9E96_RS10785;product=HlyD family type I secretion periplasmic adaptor subunit;protein_id=WP_072095627.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	13435	15615	.	-	.	ID=gene-C9E96_RS10790;Name=C9E96_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10790;old_locus_tag=C9E96_11035
NZ_PYJX01000125.1	Protein Homology	CDS	13435	15615	.	-	0	ID=cds-WP_039585603.1;Parent=gene-C9E96_RS10790;Dbxref=GenBank:WP_039585603.1;Name=WP_039585603.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461620.1;locus_tag=C9E96_RS10790;product=type I secretion system permease/ATPase;protein_id=WP_039585603.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	gene	15612	17021	.	-	.	ID=gene-C9E96_RS10795;Name=C9E96_RS10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10795;old_locus_tag=C9E96_11040
NZ_PYJX01000125.1	Protein Homology	CDS	15612	17021	.	-	0	ID=cds-WP_023993986.1;Parent=gene-C9E96_RS10795;Dbxref=GenBank:WP_023993986.1;Name=WP_023993986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461619.1;locus_tag=C9E96_RS10795;product=TolC family outer membrane protein;protein_id=WP_023993986.1;transl_table=11
NZ_PYJX01000125.1	RefSeq	pseudogene	17086	23329	.	-	.	ID=gene-C9E96_RS10800;Name=bapA;end_range=23329,.;gbkey=Gene;gene=bapA;gene_biotype=pseudogene;locus_tag=C9E96_RS10800;old_locus_tag=C9E96_11045;partial=true;pseudo=true
NZ_PYJX01000125.1	Protein Homology	CDS	17086	23329	.	-	1	ID=cds-C9E96_RS10800;Parent=gene-C9E96_RS10800;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=23329,.;gbkey=CDS;gene=bapA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001237670.1;locus_tag=C9E96_RS10800;partial=true;product=biofilm-associated protein BapA;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000250.1 1 21535
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000250.1	RefSeq	region	1	21535	.	+	.	ID=NZ_PYJX01000250.1:1..21535;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000250.1	RefSeq	pseudogene	53	193	.	+	.	ID=gene-C9E96_RS23705;Name=C9E96_RS23705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23705;partial=true;pseudo=true;start_range=.,53
NZ_PYJX01000250.1	Protein Homology	CDS	53	193	.	+	0	ID=cds-C9E96_RS23705;Parent=gene-C9E96_RS23705;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459324.1;locus_tag=C9E96_RS23705;partial=true;product=aconitase family protein;pseudo=true;start_range=.,53;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	195	821	.	+	.	ID=gene-C9E96_RS23710;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=C9E96_RS23710;old_locus_tag=C9E96_24300
NZ_PYJX01000250.1	Protein Homology	CDS	195	821	.	+	0	ID=cds-WP_024792437.1;Parent=gene-C9E96_RS23710;Dbxref=GenBank:WP_024792437.1;Name=WP_024792437.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459325.1;locus_tag=C9E96_RS23710;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_024792437.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	836	1714	.	+	.	ID=gene-C9E96_RS23715;Name=C9E96_RS23715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23715;old_locus_tag=C9E96_24305
NZ_PYJX01000250.1	Protein Homology	CDS	836	1714	.	+	0	ID=cds-WP_000780212.1;Parent=gene-C9E96_RS23715;Dbxref=GenBank:WP_000780212.1;Name=WP_000780212.1;Ontology_term=GO:0003824,GO:0016787;gbkey=CDS;go_function=catalytic activity|0003824||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459326.1;locus_tag=C9E96_RS23715;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_000780212.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	1714	2628	.	+	.	ID=gene-C9E96_RS23720;Name=C9E96_RS23720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23720;old_locus_tag=C9E96_24310
NZ_PYJX01000250.1	Protein Homology	CDS	1714	2628	.	+	0	ID=cds-WP_000105592.1;Parent=gene-C9E96_RS23720;Dbxref=GenBank:WP_000105592.1;Name=WP_000105592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459327.1;locus_tag=C9E96_RS23720;product=alpha/beta fold hydrolase;protein_id=WP_000105592.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	2662	3627	.	+	.	ID=gene-C9E96_RS23725;Name=C9E96_RS23725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23725;old_locus_tag=C9E96_24315
NZ_PYJX01000250.1	Protein Homology	CDS	2662	3627	.	+	0	ID=cds-WP_000859023.1;Parent=gene-C9E96_RS23725;Dbxref=GenBank:WP_000859023.1;Name=WP_000859023.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459328.1;locus_tag=C9E96_RS23725;product=LysR family transcriptional regulator;protein_id=WP_000859023.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	3572	3844	.	-	.	ID=gene-C9E96_RS23730;Name=C9E96_RS23730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23730;old_locus_tag=C9E96_24320
NZ_PYJX01000250.1	Protein Homology	CDS	3572	3844	.	-	0	ID=cds-WP_001675688.1;Parent=gene-C9E96_RS23730;Dbxref=GenBank:WP_001675688.1;Name=WP_001675688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459329.1;locus_tag=C9E96_RS23730;product=hypothetical protein;protein_id=WP_001675688.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	4535	4933	.	+	.	ID=gene-C9E96_RS23735;Name=C9E96_RS23735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23735;old_locus_tag=C9E96_24325
NZ_PYJX01000250.1	Protein Homology	CDS	4535	4933	.	+	0	ID=cds-WP_080203926.1;Parent=gene-C9E96_RS23735;Dbxref=GenBank:WP_080203926.1;Name=WP_080203926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459330.1;locus_tag=C9E96_RS23735;product=hypothetical protein;protein_id=WP_080203926.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	4981	5739	.	-	.	ID=gene-C9E96_RS23740;Name=stbE;gbkey=Gene;gene=stbE;gene_biotype=protein_coding;locus_tag=C9E96_RS23740;old_locus_tag=C9E96_24330
NZ_PYJX01000250.1	Protein Homology	CDS	4981	5739	.	-	0	ID=cds-WP_080203927.1;Parent=gene-C9E96_RS23740;Dbxref=GenBank:WP_080203927.1;Name=WP_080203927.1;gbkey=CDS;gene=stbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459331.1;locus_tag=C9E96_RS23740;product=fimbrial biogenesis chaperone StbE;protein_id=WP_080203927.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	5705	7030	.	-	.	ID=gene-C9E96_RS23745;Name=stbD;gbkey=Gene;gene=stbD;gene_biotype=protein_coding;locus_tag=C9E96_RS23745;old_locus_tag=C9E96_24335
NZ_PYJX01000250.1	Protein Homology	CDS	5705	7030	.	-	0	ID=cds-WP_023993801.1;Parent=gene-C9E96_RS23745;Dbxref=GenBank:WP_023993801.1;Name=WP_023993801.1;gbkey=CDS;gene=stbD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459332.1;locus_tag=C9E96_RS23745;product=fimbrial usher protein StbD;protein_id=WP_023993801.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	7035	9596	.	-	.	ID=gene-C9E96_RS23750;Name=C9E96_RS23750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23750;old_locus_tag=C9E96_24340
NZ_PYJX01000250.1	Protein Homology	CDS	7035	9596	.	-	0	ID=cds-WP_080203928.1;Parent=gene-C9E96_RS23750;Dbxref=GenBank:WP_080203928.1;Name=WP_080203928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459333.1;locus_tag=C9E96_RS23750;product=fimbrial outer membrane usher protein;protein_id=WP_080203928.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	9580	10341	.	-	.	ID=gene-C9E96_RS23755;Name=stbB;gbkey=Gene;gene=stbB;gene_biotype=protein_coding;locus_tag=C9E96_RS23755;old_locus_tag=C9E96_24345
NZ_PYJX01000250.1	Protein Homology	CDS	9580	10341	.	-	0	ID=cds-WP_080203929.1;Parent=gene-C9E96_RS23755;Dbxref=GenBank:WP_080203929.1;Name=WP_080203929.1;gbkey=CDS;gene=stbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459334.1;locus_tag=C9E96_RS23755;product=fimbrial biogenesis chaperone StbB;protein_id=WP_080203929.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	10403	10939	.	-	.	ID=gene-C9E96_RS23760;Name=C9E96_RS23760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23760;old_locus_tag=C9E96_24350
NZ_PYJX01000250.1	Protein Homology	CDS	10403	10939	.	-	0	ID=cds-WP_000062035.1;Parent=gene-C9E96_RS23760;Dbxref=GenBank:WP_000062035.1;Name=WP_000062035.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459335.1;locus_tag=C9E96_RS23760;product=fimbrial protein;protein_id=WP_000062035.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	11601	12335	.	+	.	ID=gene-C9E96_RS23765;Name=C9E96_RS23765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23765;old_locus_tag=C9E96_24355
NZ_PYJX01000250.1	Protein Homology	CDS	11601	12335	.	+	0	ID=cds-WP_139780576.1;Parent=gene-C9E96_RS23765;Dbxref=GenBank:WP_139780576.1;Name=WP_139780576.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001005860.1;locus_tag=C9E96_RS23765;product=winged helix-turn-helix domain-containing protein;protein_id=WP_139780576.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	pseudogene	12308	12608	.	+	.	ID=gene-C9E96_RS23770;Name=C9E96_RS23770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23770;old_locus_tag=C9E96_24360;pseudo=true
NZ_PYJX01000250.1	Protein Homology	CDS	12308	12608	.	+	0	ID=cds-C9E96_RS23770;Parent=gene-C9E96_RS23770;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459337.1;locus_tag=C9E96_RS23770;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	13108	14682	.	+	.	ID=gene-C9E96_RS23775;Name=C9E96_RS23775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23775;old_locus_tag=C9E96_24370
NZ_PYJX01000250.1	Protein Homology	CDS	13108	14682	.	+	0	ID=cds-WP_080203931.1;Parent=gene-C9E96_RS23775;Dbxref=GenBank:WP_080203931.1;Name=WP_080203931.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459338.1;locus_tag=C9E96_RS23775;product=EAL domain-containing protein;protein_id=WP_080203931.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	14782	15525	.	+	.	ID=gene-C9E96_RS23780;Name=C9E96_RS23780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23780;old_locus_tag=C9E96_24375
NZ_PYJX01000250.1	Protein Homology	CDS	14782	15525	.	+	0	ID=cds-WP_000081365.1;Parent=gene-C9E96_RS23780;Dbxref=GenBank:WP_000081365.1;Name=WP_000081365.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459339.1;locus_tag=C9E96_RS23780;product=transcriptional regulator;protein_id=WP_000081365.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	15498	15986	.	+	.	ID=gene-C9E96_RS23785;Name=C9E96_RS23785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23785;old_locus_tag=C9E96_24380
NZ_PYJX01000250.1	Protein Homology	CDS	15498	15986	.	+	0	ID=cds-WP_000545426.1;Parent=gene-C9E96_RS23785;Dbxref=GenBank:WP_000545426.1;Name=WP_000545426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459340.1;locus_tag=C9E96_RS23785;product=hypothetical protein;protein_id=WP_000545426.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	16387	16911	.	+	.	ID=gene-C9E96_RS23790;Name=C9E96_RS23790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23790;old_locus_tag=C9E96_24385
NZ_PYJX01000250.1	Protein Homology	CDS	16387	16911	.	+	0	ID=cds-WP_000830237.1;Parent=gene-C9E96_RS23790;Dbxref=GenBank:WP_000830237.1;Name=WP_000830237.1;Ontology_term=GO:0044384;gbkey=CDS;go_component=host outer membrane|0044384||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459341.1;locus_tag=C9E96_RS23790;product=Ail/Lom family outer membrane beta-barrel protein;protein_id=WP_000830237.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	17055	17696	.	+	.	ID=gene-C9E96_RS23795;Name=C9E96_RS23795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23795;old_locus_tag=C9E96_24390
NZ_PYJX01000250.1	Protein Homology	CDS	17055	17696	.	+	0	ID=cds-WP_000610824.1;Parent=gene-C9E96_RS23795;Dbxref=GenBank:WP_000610824.1;Name=WP_000610824.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459342.1;locus_tag=C9E96_RS23795;product=helix-turn-helix transcriptional regulator;protein_id=WP_000610824.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	17707	17931	.	+	.	ID=gene-C9E96_RS23800;Name=C9E96_RS23800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23800;old_locus_tag=C9E96_24395
NZ_PYJX01000250.1	Protein Homology	CDS	17707	17931	.	+	0	ID=cds-WP_080203932.1;Parent=gene-C9E96_RS23800;Dbxref=GenBank:WP_080203932.1;Name=WP_080203932.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459343.1;locus_tag=C9E96_RS23800;product=hypothetical protein;protein_id=WP_080203932.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	17989	18348	.	+	.	ID=gene-C9E96_RS23805;Name=C9E96_RS23805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS23805;old_locus_tag=C9E96_24400
NZ_PYJX01000250.1	Protein Homology	CDS	17989	18348	.	+	0	ID=cds-WP_000722978.1;Parent=gene-C9E96_RS23805;Dbxref=GenBank:WP_000722978.1;Name=WP_000722978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459344.1;locus_tag=C9E96_RS23805;product=DUF4156 domain-containing protein;protein_id=WP_000722978.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	gene	18418	19875	.	-	.	ID=gene-C9E96_RS23810;Name=mdsC;gbkey=Gene;gene=mdsC;gene_biotype=protein_coding;locus_tag=C9E96_RS23810;old_locus_tag=C9E96_24405
NZ_PYJX01000250.1	Protein Homology	CDS	18418	19875	.	-	0	ID=cds-WP_001575673.1;Parent=gene-C9E96_RS23810;Dbxref=GenBank:WP_001575673.1;Name=WP_001575673.1;gbkey=CDS;gene=mdsC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521068.1;locus_tag=C9E96_RS23810;product=multidrug efflux transporter outer membrane subunit MdsC;protein_id=WP_001575673.1;transl_table=11
NZ_PYJX01000250.1	RefSeq	pseudogene	19892	21535	.	-	.	ID=gene-C9E96_RS23815;Name=mdsB;end_range=21535,.;gbkey=Gene;gene=mdsB;gene_biotype=pseudogene;locus_tag=C9E96_RS23815;old_locus_tag=C9E96_24410;partial=true;pseudo=true
NZ_PYJX01000250.1	Protein Homology	CDS	19892	21535	.	-	0	ID=cds-C9E96_RS23815;Parent=gene-C9E96_RS23815;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=21535,.;gbkey=CDS;gene=mdsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459346.1;locus_tag=C9E96_RS23815;partial=true;product=multidrug efflux RND transporter permease subunit MdsB;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000098.1 1 21336
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000098.1	RefSeq	region	1	21336	.	+	.	ID=NZ_PYJX01000098.1:1..21336;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000098.1	RefSeq	gene	1	895	.	-	.	ID=gene-C9E96_RS08425;Name=rlpA;gbkey=Gene;gene=rlpA;gene_biotype=protein_coding;locus_tag=C9E96_RS08425;old_locus_tag=C9E96_08615;partial=true;start_range=.,1
NZ_PYJX01000098.1	Protein Homology	CDS	1	895	.	-	0	ID=cds-WP_135494080.1;Parent=gene-C9E96_RS08425;Dbxref=GenBank:WP_135494080.1;Name=WP_135494080.1;Ontology_term=GO:0042834;gbkey=CDS;gene=rlpA;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459630.1;locus_tag=C9E96_RS08425;partial=true;product=endolytic peptidoglycan transglycosylase RlpA;protein_id=WP_135494080.1;start_range=.,1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	906	2018	.	-	.	ID=gene-C9E96_RS08430;Name=mrdB;gbkey=Gene;gene=mrdB;gene_biotype=protein_coding;gene_synonym=rodA;locus_tag=C9E96_RS08430;old_locus_tag=C9E96_08620
NZ_PYJX01000098.1	Protein Homology	CDS	906	2018	.	-	0	ID=cds-WP_000131713.1;Parent=gene-C9E96_RS08430;Dbxref=GenBank:WP_000131713.1;Name=WP_000131713.1;Note=rod shape-determining protein RodA;gbkey=CDS;gene=mrdB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004885876.1;locus_tag=C9E96_RS08430;product=peptidoglycan glycosyltransferase MrdB;protein_id=WP_000131713.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	2021	3922	.	-	.	ID=gene-C9E96_RS08435;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=C9E96_RS08435;old_locus_tag=C9E96_08625
NZ_PYJX01000098.1	Protein Homology	CDS	2021	3922	.	-	0	ID=cds-WP_135494082.1;Parent=gene-C9E96_RS08435;Dbxref=GenBank:WP_135494082.1;Name=WP_135494082.1;Ontology_term=GO:0009252,GO:0008658,GO:0009002,GO:0016020;gbkey=CDS;gene=mrdA;go_component=membrane|0016020||IEA;go_function=penicillin binding|0008658||IEA,serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459632.1;locus_tag=C9E96_RS08435;product=peptidoglycan DD-transpeptidase MrdA;protein_id=WP_135494082.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	3953	4420	.	-	.	ID=gene-C9E96_RS08440;Name=rlmH;gbkey=Gene;gene=rlmH;gene_biotype=protein_coding;locus_tag=C9E96_RS08440;old_locus_tag=C9E96_08630
NZ_PYJX01000098.1	Protein Homology	CDS	3953	4420	.	-	0	ID=cds-WP_000776107.1;Parent=gene-C9E96_RS08440;Dbxref=GenBank:WP_000776107.1;Name=WP_000776107.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rlmH;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016245807.1;locus_tag=C9E96_RS08440;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=WP_000776107.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	4424	4741	.	-	.	ID=gene-C9E96_RS08445;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=C9E96_RS08445;old_locus_tag=C9E96_08635
NZ_PYJX01000098.1	Protein Homology	CDS	4424	4741	.	-	0	ID=cds-WP_001161670.1;Parent=gene-C9E96_RS08445;Dbxref=GenBank:WP_001161670.1;Name=WP_001161670.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007373852.1;locus_tag=C9E96_RS08445;product=ribosome silencing factor;protein_id=WP_001161670.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	5070	5678	.	-	.	ID=gene-C9E96_RS08450;Name=C9E96_RS08450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08450;old_locus_tag=C9E96_08640
NZ_PYJX01000098.1	Protein Homology	CDS	5070	5678	.	-	0	ID=cds-WP_023993213.1;Parent=gene-C9E96_RS08450;Dbxref=GenBank:WP_023993213.1;Name=WP_023993213.1;Ontology_term=GO:0009236,GO:0043755;gbkey=CDS;go_function=alpha-ribazole phosphatase activity|0043755||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459635.1;locus_tag=C9E96_RS08450;product=adenosylcobalamin/alpha-ribazole phosphatase;protein_id=WP_023993213.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	5775	6869	.	+	.	ID=gene-C9E96_RS08455;Name=cobD;gbkey=Gene;gene=cobD;gene_biotype=protein_coding;locus_tag=C9E96_RS08455;old_locus_tag=C9E96_08645
NZ_PYJX01000098.1	Protein Homology	CDS	5775	6869	.	+	0	ID=cds-WP_001173259.1;Parent=gene-C9E96_RS08455;Dbxref=GenBank:WP_001173259.1;Name=WP_001173259.1;Ontology_term=GO:0009236,GO:0003824;gbkey=CDS;gene=cobD;go_function=catalytic activity|0003824||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459636.1;locus_tag=C9E96_RS08455;product=threonine-phosphate decarboxylase CobD;protein_id=WP_001173259.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	6844	7485	.	-	.	ID=gene-C9E96_RS08460;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=C9E96_RS08460;old_locus_tag=C9E96_08650
NZ_PYJX01000098.1	Protein Homology	CDS	6844	7485	.	-	0	ID=cds-WP_001518902.1;Parent=gene-C9E96_RS08460;Dbxref=GenBank:WP_001518902.1;Name=WP_001518902.1;Ontology_term=GO:0009435,GO:0016779;gbkey=CDS;gene=nadD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459637.1;locus_tag=C9E96_RS08460;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_001518902.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	7487	8518	.	-	.	ID=gene-C9E96_RS08465;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=C9E96_RS08465;old_locus_tag=C9E96_08655
NZ_PYJX01000098.1	Protein Homology	CDS	7487	8518	.	-	0	ID=cds-WP_000620491.1;Parent=gene-C9E96_RS08465;Dbxref=GenBank:WP_000620491.1;Name=WP_000620491.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=holA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459638.1;locus_tag=C9E96_RS08465;product=DNA polymerase III subunit delta;protein_id=WP_000620491.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	8518	9108	.	-	.	ID=gene-C9E96_RS08470;Name=lptE;gbkey=Gene;gene=lptE;gene_biotype=protein_coding;locus_tag=C9E96_RS08470;old_locus_tag=C9E96_08660
NZ_PYJX01000098.1	Protein Homology	CDS	8518	9108	.	-	0	ID=cds-WP_001269950.1;Parent=gene-C9E96_RS08470;Dbxref=GenBank:WP_001269950.1;Name=WP_001269950.1;Ontology_term=GO:0043165,GO:0019867;gbkey=CDS;gene=lptE;go_component=outer membrane|0019867||IEA;go_process=Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459639.1;locus_tag=C9E96_RS08470;product=LPS assembly lipoprotein LptE;protein_id=WP_001269950.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	9123	11705	.	-	.	ID=gene-C9E96_RS08475;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=C9E96_RS08475;old_locus_tag=C9E96_08665
NZ_PYJX01000098.1	Protein Homology	CDS	9123	11705	.	-	0	ID=cds-WP_023993211.1;Parent=gene-C9E96_RS08475;Dbxref=GenBank:WP_023993211.1;Name=WP_023993211.1;Ontology_term=GO:0006429,GO:0000166,GO:0004823,GO:0005524;gbkey=CDS;gene=leuS;go_function=nucleotide binding|0000166||IEA,leucine-tRNA ligase activity|0004823||IEA,ATP binding|0005524||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008456064.1;locus_tag=C9E96_RS08475;product=leucine--tRNA ligase;protein_id=WP_023993211.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	11942	12283	.	+	.	ID=gene-C9E96_RS08480;Name=C9E96_RS08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08480;old_locus_tag=C9E96_08670
NZ_PYJX01000098.1	Protein Homology	CDS	11942	12283	.	+	0	ID=cds-WP_001574029.1;Parent=gene-C9E96_RS08480;Dbxref=GenBank:WP_001574029.1;Name=WP_001574029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447100.1;locus_tag=C9E96_RS08480;product=UxaA family hydrolase;protein_id=WP_001574029.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	12300	13472	.	+	.	ID=gene-C9E96_RS08485;Name=C9E96_RS08485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08485;old_locus_tag=C9E96_08675
NZ_PYJX01000098.1	Protein Homology	CDS	12300	13472	.	+	0	ID=cds-WP_001670689.1;Parent=gene-C9E96_RS08485;Dbxref=GenBank:WP_001670689.1;Name=WP_001670689.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447101.1;locus_tag=C9E96_RS08485;product=UxaA family hydrolase;protein_id=WP_001670689.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	13522	14475	.	+	.	ID=gene-C9E96_RS08490;Name=C9E96_RS08490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08490;old_locus_tag=C9E96_08680
NZ_PYJX01000098.1	Protein Homology	CDS	13522	14475	.	+	0	ID=cds-WP_023993210.1;Parent=gene-C9E96_RS08490;Dbxref=GenBank:WP_023993210.1;Name=WP_023993210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459643.1;locus_tag=C9E96_RS08490;product=2-keto-3-deoxygluconate permease;protein_id=WP_023993210.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	14543	16471	.	+	.	ID=gene-C9E96_RS08495;Name=C9E96_RS08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08495;old_locus_tag=C9E96_08685
NZ_PYJX01000098.1	Protein Homology	CDS	14543	16471	.	+	0	ID=cds-WP_001044182.1;Parent=gene-C9E96_RS08495;Dbxref=GenBank:WP_001044182.1;Name=WP_001044182.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459644.1;locus_tag=C9E96_RS08495;product=sigma-54 interaction domain-containing protein;protein_id=WP_001044182.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	16564	17037	.	+	.	ID=gene-C9E96_RS08500;Name=C9E96_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08500;old_locus_tag=C9E96_08690
NZ_PYJX01000098.1	Protein Homology	CDS	16564	17037	.	+	0	ID=cds-WP_001044885.1;Parent=gene-C9E96_RS08500;Dbxref=GenBank:WP_001044885.1;Name=WP_001044885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459645.1;locus_tag=C9E96_RS08500;product=zinc ribbon-containing protein;protein_id=WP_001044885.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	17076	18071	.	-	.	ID=gene-C9E96_RS08505;Name=C9E96_RS08505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08505;old_locus_tag=C9E96_08695
NZ_PYJX01000098.1	Protein Homology	CDS	17076	18071	.	-	0	ID=cds-WP_023993209.1;Parent=gene-C9E96_RS08505;Dbxref=GenBank:WP_023993209.1;Name=WP_023993209.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459646.1;locus_tag=C9E96_RS08505;product=tetratricopeptide repeat protein;protein_id=WP_023993209.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	18196	18903	.	+	.	ID=gene-C9E96_RS08510;Name=C9E96_RS08510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08510;old_locus_tag=C9E96_08700
NZ_PYJX01000098.1	Protein Homology	CDS	18196	18903	.	+	0	ID=cds-WP_001575803.1;Parent=gene-C9E96_RS08510;Dbxref=GenBank:WP_001575803.1;Name=WP_001575803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459647.1;locus_tag=C9E96_RS08510;product=DUF1266 domain-containing protein;protein_id=WP_001575803.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	18900	20333	.	+	.	ID=gene-C9E96_RS08515;Name=C9E96_RS08515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08515;old_locus_tag=C9E96_08705
NZ_PYJX01000098.1	Protein Homology	CDS	18900	20333	.	+	0	ID=cds-WP_000845201.1;Parent=gene-C9E96_RS08515;Dbxref=GenBank:WP_000845201.1;Name=WP_000845201.1;Ontology_term=GO:0006457;gbkey=CDS;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459648.1;locus_tag=C9E96_RS08515;product=J domain-containing protein;protein_id=WP_000845201.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	20345	21040	.	+	.	ID=gene-C9E96_RS08520;Name=C9E96_RS08520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08520;old_locus_tag=C9E96_08710
NZ_PYJX01000098.1	Protein Homology	CDS	20345	21040	.	+	0	ID=cds-WP_000356622.1;Parent=gene-C9E96_RS08520;Dbxref=GenBank:WP_000356622.1;Name=WP_000356622.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459649.1;locus_tag=C9E96_RS08520;product=DUF1266 domain-containing protein;protein_id=WP_000356622.1;transl_table=11
NZ_PYJX01000098.1	RefSeq	gene	21037	21336	.	+	.	ID=gene-C9E96_RS08525;Name=C9E96_RS08525;end_range=21336,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS08525;old_locus_tag=C9E96_08715;partial=true
NZ_PYJX01000098.1	Protein Homology	CDS	21037	21336	.	+	0	ID=cds-WP_135494084.1;Parent=gene-C9E96_RS08525;Dbxref=GenBank:WP_135494084.1;Name=WP_135494084.1;Ontology_term=GO:0006457;end_range=21336,.;gbkey=CDS;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459650.1;locus_tag=C9E96_RS08525;partial=true;product=J domain-containing protein;protein_id=WP_135494084.1;transl_table=11
##sequence-region NZ_PYJX01000030.1 1 21258
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000030.1	RefSeq	region	1	21258	.	+	.	ID=NZ_PYJX01000030.1:1..21258;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000030.1	RefSeq	pseudogene	1	201	.	-	.	ID=gene-C9E96_RS01470;Name=C9E96_RS01470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01470;old_locus_tag=C9E96_01500;partial=true;pseudo=true;start_range=.,1
NZ_PYJX01000030.1	Protein Homology	CDS	1	201	.	-	0	ID=cds-C9E96_RS01470;Parent=gene-C9E96_RS01470;Note=predicted SAM-dependent methyltransferase%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462494.1;locus_tag=C9E96_RS01470;partial=true;product=16S rRNA (guanine(1516)-N(2))-methyltransferase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	208	2250	.	-	.	ID=gene-C9E96_RS01475;Name=prlC;gbkey=Gene;gene=prlC;gene_biotype=protein_coding;locus_tag=C9E96_RS01475;old_locus_tag=C9E96_01505
NZ_PYJX01000030.1	Protein Homology	CDS	208	2250	.	-	0	ID=cds-WP_000184178.1;Parent=gene-C9E96_RS01475;Dbxref=GenBank:WP_000184178.1;Name=WP_000184178.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=prlC;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020317218.1;locus_tag=C9E96_RS01475;product=oligopeptidase A;protein_id=WP_000184178.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	2432	3703	.	-	.	ID=gene-C9E96_RS01480;Name=C9E96_RS01480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01480;old_locus_tag=C9E96_01510
NZ_PYJX01000030.1	Protein Homology	CDS	2432	3703	.	-	0	ID=cds-WP_000766151.1;Parent=gene-C9E96_RS01480;Dbxref=GenBank:WP_000766151.1;Name=WP_000766151.1;Ontology_term=GO:0016311,GO:0003993;gbkey=CDS;go_function=acid phosphatase activity|0003993||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462496.1;locus_tag=C9E96_RS01480;product=acid phosphatase;protein_id=WP_000766151.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	3914	4756	.	+	.	ID=gene-C9E96_RS01485;Name=C9E96_RS01485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01485;old_locus_tag=C9E96_01515
NZ_PYJX01000030.1	Protein Homology	CDS	3914	4756	.	+	0	ID=cds-WP_017465323.1;Parent=gene-C9E96_RS01485;Dbxref=GenBank:WP_017465323.1;Name=WP_017465323.1;Ontology_term=GO:0015976,GO:0070475,GO:0003723,GO:0008988,GO:1904047;gbkey=CDS;go_function=RNA binding|0003723||IEA,rRNA (adenine-N6-)-methyltransferase activity|0008988||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=carbon utilization|0015976||IEA,rRNA base methylation|0070475||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462497.1;locus_tag=C9E96_RS01485;product=23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ;protein_id=WP_017465323.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	4861	6213	.	+	.	ID=gene-C9E96_RS01490;Name=gorA;gbkey=Gene;gene=gorA;gene_biotype=protein_coding;locus_tag=C9E96_RS01490;old_locus_tag=C9E96_01520
NZ_PYJX01000030.1	Protein Homology	CDS	4861	6213	.	+	0	ID=cds-WP_000160764.1;Parent=gene-C9E96_RS01490;Dbxref=GenBank:WP_000160764.1;Name=WP_000160764.1;Ontology_term=GO:0006749,GO:0045454,GO:0004362,GO:0050660,GO:0050661;gbkey=CDS;gene=gorA;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;go_process=glutathione metabolic process|0006749||IEA,cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003861215.1;locus_tag=C9E96_RS01490;product=glutathione-disulfide reductase;protein_id=WP_000160764.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	6260	7303	.	-	.	ID=gene-C9E96_RS01495;Name=fraE;gbkey=Gene;gene=fraE;gene_biotype=protein_coding;locus_tag=C9E96_RS01495;old_locus_tag=C9E96_01525
NZ_PYJX01000030.1	Protein Homology	CDS	6260	7303	.	-	0	ID=cds-WP_000702747.1;Parent=gene-C9E96_RS01495;Dbxref=GenBank:WP_000702747.1;Name=WP_000702747.1;gbkey=CDS;gene=fraE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462499.1;locus_tag=C9E96_RS01495;product=fructose-asparagine asparaginase;protein_id=WP_000702747.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	7362	8681	.	-	.	ID=gene-C9E96_RS01500;Name=C9E96_RS01500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01500;old_locus_tag=C9E96_01530
NZ_PYJX01000030.1	Protein Homology	CDS	7362	8681	.	-	0	ID=cds-WP_000498935.1;Parent=gene-C9E96_RS01500;Dbxref=GenBank:WP_000498935.1;Name=WP_000498935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462500.1;locus_tag=C9E96_RS01500;product=anaerobic C4-dicarboxylate transporter family protein;protein_id=WP_000498935.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	8735	9580	.	-	.	ID=gene-C9E96_RS01505;Name=fraD;gbkey=Gene;gene=fraD;gene_biotype=protein_coding;locus_tag=C9E96_RS01505;old_locus_tag=C9E96_01535
NZ_PYJX01000030.1	Protein Homology	CDS	8735	9580	.	-	0	ID=cds-WP_023250589.1;Parent=gene-C9E96_RS01505;Dbxref=GenBank:WP_023250589.1;Name=WP_023250589.1;gbkey=CDS;gene=fraD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462501.1;locus_tag=C9E96_RS01505;product=fructose-aspartate kinase;protein_id=WP_023250589.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	9644	10621	.	-	.	ID=gene-C9E96_RS01510;Name=fraB;gbkey=Gene;gene=fraB;gene_biotype=protein_coding;locus_tag=C9E96_RS01510;old_locus_tag=C9E96_01540
NZ_PYJX01000030.1	Protein Homology	CDS	9644	10621	.	-	0	ID=cds-WP_077906047.1;Parent=gene-C9E96_RS01510;Dbxref=GenBank:WP_077906047.1;Name=WP_077906047.1;gbkey=CDS;gene=fraB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462502.1;locus_tag=C9E96_RS01510;product=6-phosphofructose-aspartate deglycase;protein_id=WP_077906047.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	10797	11516	.	-	.	ID=gene-C9E96_RS01515;Name=C9E96_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01515;old_locus_tag=C9E96_01545
NZ_PYJX01000030.1	Protein Homology	CDS	10797	11516	.	-	0	ID=cds-WP_000572569.1;Parent=gene-C9E96_RS01515;Dbxref=GenBank:WP_000572569.1;Name=WP_000572569.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462503.1;locus_tag=C9E96_RS01515;product=GntR family transcriptional regulator;protein_id=WP_000572569.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	11843	13492	.	+	.	ID=gene-C9E96_RS01520;Name=C9E96_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01520;old_locus_tag=C9E96_01550
NZ_PYJX01000030.1	Protein Homology	CDS	11843	13492	.	+	0	ID=cds-WP_000934257.1;Parent=gene-C9E96_RS01520;Dbxref=GenBank:WP_000934257.1;Name=WP_000934257.1;Ontology_term=GO:0005993,GO:0004555;gbkey=CDS;go_function=alpha%2Calpha-trehalase activity|0004555||IEA;go_process=trehalose catabolic process|0005993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462504.1;locus_tag=C9E96_RS01520;product=alpha%2Calpha-trehalase;protein_id=WP_000934257.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	13505	15094	.	-	.	ID=gene-C9E96_RS01525;Name=C9E96_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01525;old_locus_tag=C9E96_01555
NZ_PYJX01000030.1	Protein Homology	CDS	13505	15094	.	-	0	ID=cds-WP_135493763.1;Parent=gene-C9E96_RS01525;Dbxref=GenBank:WP_135493763.1;Name=WP_135493763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462505.1;locus_tag=C9E96_RS01525;product=STY4199 family HEPN domain-containing protein;protein_id=WP_135493763.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	15375	15731	.	+	.	ID=gene-C9E96_RS01530;Name=C9E96_RS01530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01530;old_locus_tag=C9E96_01560
NZ_PYJX01000030.1	Protein Homology	CDS	15375	15731	.	+	0	ID=cds-WP_001120252.1;Parent=gene-C9E96_RS01530;Dbxref=GenBank:WP_001120252.1;Name=WP_001120252.1;Ontology_term=GO:0009253,GO:0016998,GO:0003796;gbkey=CDS;go_function=lysozyme activity|0003796||IEA;go_process=peptidoglycan catabolic process|0009253||IEA,cell wall macromolecule catabolic process|0016998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462506.1;locus_tag=C9E96_RS01530;product=glycoside hydrolase family protein;protein_id=WP_001120252.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	15737	16339	.	-	.	ID=gene-C9E96_RS01535;Name=C9E96_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01535;old_locus_tag=C9E96_01565
NZ_PYJX01000030.1	Protein Homology	CDS	15737	16339	.	-	0	ID=cds-WP_001196084.1;Parent=gene-C9E96_RS01535;Dbxref=GenBank:WP_001196084.1;Name=WP_001196084.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462507.1;locus_tag=C9E96_RS01535;product=helix-turn-helix transcriptional regulator;protein_id=WP_001196084.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	16970	17869	.	+	.	ID=gene-C9E96_RS01540;Name=C9E96_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01540;old_locus_tag=C9E96_01570
NZ_PYJX01000030.1	Protein Homology	CDS	16970	17869	.	+	0	ID=cds-WP_000358050.1;Parent=gene-C9E96_RS01540;Dbxref=GenBank:WP_000358050.1;Name=WP_000358050.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462508.1;locus_tag=C9E96_RS01540;product=LysR family transcriptional regulator;protein_id=WP_000358050.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	17939	18970	.	+	.	ID=gene-C9E96_RS01545;Name=yhjD;gbkey=Gene;gene=yhjD;gene_biotype=protein_coding;locus_tag=C9E96_RS01545;old_locus_tag=C9E96_01575
NZ_PYJX01000030.1	Protein Homology	CDS	17939	18970	.	+	0	ID=cds-WP_135493765.1;Parent=gene-C9E96_RS01545;Dbxref=GenBank:WP_135493765.1;Name=WP_135493765.1;gbkey=CDS;gene=yhjD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462509.1;locus_tag=C9E96_RS01545;product=inner membrane protein YhjD;protein_id=WP_135493765.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	19321	20643	.	+	.	ID=gene-C9E96_RS01550;Name=C9E96_RS01550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01550;old_locus_tag=C9E96_01580
NZ_PYJX01000030.1	Protein Homology	CDS	19321	20643	.	+	0	ID=cds-WP_001748884.1;Parent=gene-C9E96_RS01550;Dbxref=GenBank:WP_001748884.1;Name=WP_001748884.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462510.1;locus_tag=C9E96_RS01550;product=MFS transporter;protein_id=WP_001748884.1;transl_table=11
NZ_PYJX01000030.1	RefSeq	gene	20683	21258	.	-	.	ID=gene-C9E96_RS01555;Name=C9E96_RS01555;end_range=21258,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01555;old_locus_tag=C9E96_01585;partial=true
NZ_PYJX01000030.1	Protein Homology	CDS	20683	21258	.	-	0	ID=cds-WP_135493767.1;Parent=gene-C9E96_RS01555;Dbxref=GenBank:WP_135493767.1;Name=WP_135493767.1;end_range=21258,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462511.1;locus_tag=C9E96_RS01555;partial=true;product=AsmA family protein;protein_id=WP_135493767.1;transl_table=11
##sequence-region NZ_PYJX01000084.1 1 84055
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000084.1	RefSeq	region	1	84055	.	+	.	ID=NZ_PYJX01000084.1:1..84055;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000084.1	RefSeq	gene	1	794	.	-	.	ID=gene-C9E96_RS07275;Name=C9E96_RS07275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07275;old_locus_tag=C9E96_07450;partial=true;start_range=.,1
NZ_PYJX01000084.1	Protein Homology	CDS	1	794	.	-	0	ID=cds-WP_135494042.1;Parent=gene-C9E96_RS07275;Dbxref=GenBank:WP_135494042.1;Name=WP_135494042.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461729.1;locus_tag=C9E96_RS07275;partial=true;product=PLP-dependent aminotransferase family protein;protein_id=WP_135494042.1;start_range=.,1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	883	1314	.	+	.	ID=gene-C9E96_RS07280;Name=C9E96_RS07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07280;old_locus_tag=C9E96_07455
NZ_PYJX01000084.1	Protein Homology	CDS	883	1314	.	+	0	ID=cds-WP_000209807.1;Parent=gene-C9E96_RS07280;Dbxref=GenBank:WP_000209807.1;Name=WP_000209807.1;Ontology_term=GO:0051920;gbkey=CDS;go_function=peroxiredoxin activity|0051920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461730.1;locus_tag=C9E96_RS07280;product=carboxymuconolactone decarboxylase family protein;protein_id=WP_000209807.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	1586	1831	.	+	.	ID=gene-C9E96_RS07290;Name=nrdH;gbkey=Gene;gene=nrdH;gene_biotype=protein_coding;locus_tag=C9E96_RS07290;old_locus_tag=C9E96_07465
NZ_PYJX01000084.1	Protein Homology	CDS	1586	1831	.	+	0	ID=cds-WP_000028873.1;Parent=gene-C9E96_RS07290;Dbxref=GenBank:WP_000028873.1;Name=WP_000028873.1;gbkey=CDS;gene=nrdH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461731.1;locus_tag=C9E96_RS07290;product=glutaredoxin-like protein NrdH;protein_id=WP_000028873.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	1828	2238	.	+	.	ID=gene-C9E96_RS07295;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;locus_tag=C9E96_RS07295;old_locus_tag=C9E96_07470
NZ_PYJX01000084.1	Protein Homology	CDS	1828	2238	.	+	0	ID=cds-WP_001275402.1;Parent=gene-C9E96_RS07295;Dbxref=GenBank:WP_001275402.1;Name=WP_001275402.1;Ontology_term=GO:0009263,GO:0036211,GO:0010181;gbkey=CDS;gene=nrdI;go_function=FMN binding|0010181||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA,protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461732.1;locus_tag=C9E96_RS07295;product=class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI;protein_id=WP_001275402.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	2238	4355	.	+	.	ID=gene-C9E96_RS07300;Name=nrdE;gbkey=Gene;gene=nrdE;gene_biotype=protein_coding;locus_tag=C9E96_RS07300;old_locus_tag=C9E96_07475
NZ_PYJX01000084.1	Protein Homology	CDS	2238	4355	.	+	0	ID=cds-WP_432431442.1;Parent=gene-C9E96_RS07300;Dbxref=GenBank:WP_432431442.1;Name=WP_432431442.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdE;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001526351.1;locus_tag=C9E96_RS07300;product=class 1b ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_432431442.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	4366	5325	.	+	.	ID=gene-C9E96_RS07305;Name=nrdF;gbkey=Gene;gene=nrdF;gene_biotype=protein_coding;locus_tag=C9E96_RS07305;old_locus_tag=C9E96_07480
NZ_PYJX01000084.1	Protein Homology	CDS	4366	5325	.	+	0	ID=cds-WP_080204036.1;Parent=gene-C9E96_RS07305;Dbxref=GenBank:WP_080204036.1;Name=WP_080204036.1;Ontology_term=GO:0009263,GO:0004748,GO:0005971;gbkey=CDS;gene=nrdF;go_component=ribonucleoside-diphosphate reductase complex|0005971||IEA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461734.1;locus_tag=C9E96_RS07305;product=class 1b ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_080204036.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	5680	6882	.	+	.	ID=gene-C9E96_RS07315;Name=proV;gbkey=Gene;gene=proV;gene_biotype=protein_coding;locus_tag=C9E96_RS07315;old_locus_tag=C9E96_07490
NZ_PYJX01000084.1	Protein Homology	CDS	5680	6882	.	+	0	ID=cds-WP_000985529.1;Parent=gene-C9E96_RS07315;Dbxref=GenBank:WP_000985529.1;Name=WP_000985529.1;Ontology_term=GO:0031460,GO:0005524;gbkey=CDS;gene=proV;go_function=ATP binding|0005524||IEA;go_process=glycine betaine transport|0031460||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461735.1;locus_tag=C9E96_RS07315;product=glycine betaine/L-proline ABC transporter ATP-binding protein ProV;protein_id=WP_000985529.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	6875	7939	.	+	.	ID=gene-C9E96_RS07320;Name=proW;gbkey=Gene;gene=proW;gene_biotype=protein_coding;locus_tag=C9E96_RS07320;old_locus_tag=C9E96_07495
NZ_PYJX01000084.1	Protein Homology	CDS	6875	7939	.	+	0	ID=cds-WP_000775021.1;Parent=gene-C9E96_RS07320;Dbxref=GenBank:WP_000775021.1;Name=WP_000775021.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=proW;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461736.1;locus_tag=C9E96_RS07320;product=glycine betaine/L-proline ABC transporter permease ProW;protein_id=WP_000775021.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	8009	9004	.	+	.	ID=gene-C9E96_RS07325;Name=proX;gbkey=Gene;gene=proX;gene_biotype=protein_coding;locus_tag=C9E96_RS07325;old_locus_tag=C9E96_07500
NZ_PYJX01000084.1	Protein Homology	CDS	8009	9004	.	+	0	ID=cds-WP_001216613.1;Parent=gene-C9E96_RS07325;Dbxref=GenBank:WP_001216613.1;Name=WP_001216613.1;Ontology_term=GO:0055085,GO:0022857,GO:0043190;gbkey=CDS;gene=proX;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461737.1;locus_tag=C9E96_RS07325;product=glycine betaine/L-proline ABC transporter substrate-binding protein ProX;protein_id=WP_001216613.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	9169	10353	.	+	.	ID=gene-C9E96_RS07330;Name=C9E96_RS07330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07330;old_locus_tag=C9E96_07505
NZ_PYJX01000084.1	Protein Homology	CDS	9169	10353	.	+	0	ID=cds-WP_000165769.1;Parent=gene-C9E96_RS07330;Dbxref=GenBank:WP_000165769.1;Name=WP_000165769.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461738.1;locus_tag=C9E96_RS07330;product=MFS transporter;protein_id=WP_000165769.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	10850	11380	.	+	.	ID=gene-C9E96_RS07335;Name=mprA;gbkey=Gene;gene=mprA;gene_biotype=protein_coding;locus_tag=C9E96_RS07335;old_locus_tag=C9E96_07510
NZ_PYJX01000084.1	Protein Homology	CDS	10850	11380	.	+	0	ID=cds-WP_000378431.1;Parent=gene-C9E96_RS07335;Dbxref=GenBank:WP_000378431.1;Name=WP_000378431.1;gbkey=CDS;gene=mprA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461739.1;locus_tag=C9E96_RS07335;product=transcriptional repressor MprA;protein_id=WP_000378431.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	11507	12679	.	+	.	ID=gene-C9E96_RS07340;Name=emrA;gbkey=Gene;gene=emrA;gene_biotype=protein_coding;locus_tag=C9E96_RS07340;old_locus_tag=C9E96_07515
NZ_PYJX01000084.1	Protein Homology	CDS	11507	12679	.	+	0	ID=cds-WP_001275602.1;Parent=gene-C9E96_RS07340;Dbxref=GenBank:WP_001275602.1;Name=WP_001275602.1;gbkey=CDS;gene=emrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461740.1;locus_tag=C9E96_RS07340;product=multidrug efflux MFS transporter periplasmic adaptor subunit EmrA;protein_id=WP_001275602.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	12696	14234	.	+	.	ID=gene-C9E96_RS07345;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=C9E96_RS07345;old_locus_tag=C9E96_07520
NZ_PYJX01000084.1	Protein Homology	CDS	12696	14234	.	+	0	ID=cds-WP_001187298.1;Parent=gene-C9E96_RS07345;Dbxref=GenBank:WP_001187298.1;Name=WP_001187298.1;gbkey=CDS;gene=emrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461741.1;locus_tag=C9E96_RS07345;product=multidrug efflux MFS transporter permease subunit EmrB;protein_id=WP_001187298.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	14283	15653	.	-	.	ID=gene-C9E96_RS07350;Name=C9E96_RS07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07350;old_locus_tag=C9E96_07525
NZ_PYJX01000084.1	Protein Homology	CDS	14283	15653	.	-	0	ID=cds-WP_023237386.1;Parent=gene-C9E96_RS07350;Dbxref=GenBank:WP_023237386.1;Name=WP_023237386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461742.1;locus_tag=C9E96_RS07350;product=carbohydrate porin;protein_id=WP_023237386.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	15999	16514	.	-	.	ID=gene-C9E96_RS07355;Name=luxS;gbkey=Gene;gene=luxS;gene_biotype=protein_coding;locus_tag=C9E96_RS07355;old_locus_tag=C9E96_07530
NZ_PYJX01000084.1	Protein Homology	CDS	15999	16514	.	-	0	ID=cds-WP_001130193.1;Parent=gene-C9E96_RS07355;Dbxref=GenBank:WP_001130193.1;Name=WP_001130193.1;gbkey=CDS;gene=luxS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008458247.1;locus_tag=C9E96_RS07355;product=S-ribosylhomocysteine lyase;protein_id=WP_001130193.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	16664	18220	.	-	.	ID=gene-C9E96_RS07360;Name=gshA;gbkey=Gene;gene=gshA;gene_biotype=protein_coding;locus_tag=C9E96_RS07360;old_locus_tag=C9E96_07535
NZ_PYJX01000084.1	Protein Homology	CDS	16664	18220	.	-	0	ID=cds-WP_000611821.1;Parent=gene-C9E96_RS07360;Dbxref=GenBank:WP_000611821.1;Name=WP_000611821.1;Ontology_term=GO:0006750,GO:0004357;gbkey=CDS;gene=gshA;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461744.1;locus_tag=C9E96_RS07360;product=glutamate--cysteine ligase;protein_id=WP_000611821.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	18297	18722	.	-	.	ID=gene-C9E96_RS07365;Name=C9E96_RS07365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07365;old_locus_tag=C9E96_07540
NZ_PYJX01000084.1	Protein Homology	CDS	18297	18722	.	-	0	ID=cds-WP_001279499.1;Parent=gene-C9E96_RS07365;Dbxref=GenBank:WP_001279499.1;Name=WP_001279499.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461745.1;locus_tag=C9E96_RS07365;product=YqaA family protein;protein_id=WP_001279499.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	18719	19285	.	-	.	ID=gene-C9E96_RS07370;Name=yqaB;gbkey=Gene;gene=yqaB;gene_biotype=protein_coding;locus_tag=C9E96_RS07370;old_locus_tag=C9E96_07545
NZ_PYJX01000084.1	Protein Homology	CDS	18719	19285	.	-	0	ID=cds-WP_000271296.1;Parent=gene-C9E96_RS07370;Dbxref=GenBank:WP_000271296.1;Name=WP_000271296.1;gbkey=CDS;gene=yqaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461746.1;locus_tag=C9E96_RS07370;product=fructose-1-phosphate/6-phosphogluconate phosphatase;protein_id=WP_000271296.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	19515	19591	.	-	.	ID=gene-C9E96_RS07375;Name=C9E96_RS07375;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS07375;old_locus_tag=C9E96_07550
NZ_PYJX01000084.1	tRNAscan-SE	tRNA	19515	19591	.	-	.	ID=rna-C9E96_RS07375;Parent=gene-C9E96_RS07375;anticodon=(pos:complement(19555..19557));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS07375;product=tRNA-Arg
NZ_PYJX01000084.1	tRNAscan-SE	exon	19515	19591	.	-	.	ID=exon-C9E96_RS07375-1;Parent=rna-C9E96_RS07375;anticodon=(pos:complement(19555..19557));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS07375;product=tRNA-Arg
NZ_PYJX01000084.1	RefSeq	gene	19654	19730	.	-	.	ID=gene-C9E96_RS07380;Name=C9E96_RS07380;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS07380;old_locus_tag=C9E96_07555
NZ_PYJX01000084.1	tRNAscan-SE	tRNA	19654	19730	.	-	.	ID=rna-C9E96_RS07380;Parent=gene-C9E96_RS07380;anticodon=(pos:complement(19694..19696));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS07380;product=tRNA-Arg
NZ_PYJX01000084.1	tRNAscan-SE	exon	19654	19730	.	-	.	ID=exon-C9E96_RS07380-1;Parent=rna-C9E96_RS07380;anticodon=(pos:complement(19694..19696));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS07380;product=tRNA-Arg
NZ_PYJX01000084.1	RefSeq	gene	19734	19826	.	-	.	ID=gene-C9E96_RS07385;Name=C9E96_RS07385;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS07385;old_locus_tag=C9E96_07560
NZ_PYJX01000084.1	tRNAscan-SE	tRNA	19734	19826	.	-	.	ID=rna-C9E96_RS07385;Parent=gene-C9E96_RS07385;anticodon=(pos:complement(19790..19792));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS07385;product=tRNA-Ser
NZ_PYJX01000084.1	tRNAscan-SE	exon	19734	19826	.	-	.	ID=exon-C9E96_RS07385-1;Parent=rna-C9E96_RS07385;anticodon=(pos:complement(19790..19792));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS07385;product=tRNA-Ser
NZ_PYJX01000084.1	RefSeq	gene	20130	20315	.	-	.	ID=gene-C9E96_RS07390;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;locus_tag=C9E96_RS07390;old_locus_tag=C9E96_07570
NZ_PYJX01000084.1	Protein Homology	CDS	20130	20315	.	-	0	ID=cds-WP_000906486.1;Parent=gene-C9E96_RS07390;Dbxref=GenBank:WP_000906486.1;Name=WP_000906486.1;gbkey=CDS;gene=csrA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001774971.1;locus_tag=C9E96_RS07390;product=carbon storage regulator CsrA;protein_id=WP_000906486.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	20550	23180	.	-	.	ID=gene-C9E96_RS07395;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=C9E96_RS07395;old_locus_tag=C9E96_07575
NZ_PYJX01000084.1	Protein Homology	CDS	20550	23180	.	-	0	ID=cds-WP_023259045.1;Parent=gene-C9E96_RS07395;Dbxref=GenBank:WP_023259045.1;Name=WP_023259045.1;Ontology_term=GO:0006419,GO:0000166,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461748.1;locus_tag=C9E96_RS07395;product=alanine--tRNA ligase;protein_id=WP_023259045.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	23416	23916	.	-	.	ID=gene-C9E96_RS07405;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=C9E96_RS07405;old_locus_tag=C9E96_07585
NZ_PYJX01000084.1	Protein Homology	CDS	23416	23916	.	-	0	ID=cds-WP_001294861.1;Parent=gene-C9E96_RS07405;Dbxref=GenBank:WP_001294861.1;Name=WP_001294861.1;gbkey=CDS;gene=recX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461749.1;locus_tag=C9E96_RS07405;product=recombination regulator RecX;protein_id=WP_001294861.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	24033	25094	.	-	.	ID=gene-C9E96_RS07410;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=C9E96_RS07410;old_locus_tag=C9E96_07590
NZ_PYJX01000084.1	Protein Homology	CDS	24033	25094	.	-	0	ID=cds-WP_135494046.1;Parent=gene-C9E96_RS07410;Dbxref=GenBank:WP_135494046.1;Name=WP_135494046.1;Ontology_term=GO:0006281,GO:0003677,GO:0003697,GO:0005524,GO:0008094;gbkey=CDS;gene=recA;go_function=DNA binding|0003677||IEA,single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461750.1;locus_tag=C9E96_RS07410;product=recombinase RecA;protein_id=WP_135494046.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	25179	25676	.	-	.	ID=gene-C9E96_RS07415;Name=pncC;gbkey=Gene;gene=pncC;gene_biotype=protein_coding;locus_tag=C9E96_RS07415;old_locus_tag=C9E96_07595
NZ_PYJX01000084.1	Protein Homology	CDS	25179	25676	.	-	0	ID=cds-WP_001528025.1;Parent=gene-C9E96_RS07415;Dbxref=GenBank:WP_001528025.1;Name=WP_001528025.1;gbkey=CDS;gene=pncC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461751.1;locus_tag=C9E96_RS07415;product=nicotinamide-nucleotide amidase;protein_id=WP_001528025.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	25872	26117	.	+	.	ID=gene-C9E96_RS24175;Name=C9E96_RS24175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24175;old_locus_tag=C9E96_07600
NZ_PYJX01000084.1	Protein Homology	CDS	25872	26117	.	+	0	ID=cds-WP_001519391.1;Parent=gene-C9E96_RS24175;Dbxref=GenBank:WP_001519391.1;Name=WP_001519391.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000053775.1;locus_tag=C9E96_RS24175;product=hypothetical protein;protein_id=WP_001519391.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	26155	27234	.	-	.	ID=gene-C9E96_RS07425;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=C9E96_RS07425;old_locus_tag=C9E96_07605
NZ_PYJX01000084.1	Protein Homology	CDS	26155	27234	.	-	0	ID=cds-WP_023206438.1;Parent=gene-C9E96_RS07425;Dbxref=GenBank:WP_023206438.1;Name=WP_023206438.1;gbkey=CDS;gene=mltB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461752.1;locus_tag=C9E96_RS07425;product=lytic murein transglycosylase B;protein_id=WP_023206438.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	27488	28051	.	+	.	ID=gene-C9E96_RS07430;Name=srlA;gbkey=Gene;gene=srlA;gene_biotype=protein_coding;locus_tag=C9E96_RS07430;old_locus_tag=C9E96_07610
NZ_PYJX01000084.1	Protein Homology	CDS	27488	28051	.	+	0	ID=cds-WP_000573333.1;Parent=gene-C9E96_RS07430;Dbxref=GenBank:WP_000573333.1;Name=WP_000573333.1;Ontology_term=GO:0009401,GO:0015795;gbkey=CDS;gene=srlA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,sorbitol transmembrane transport|0015795||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461753.1;locus_tag=C9E96_RS07430;product=PTS glucitol/sorbitol transporter subunit IIC;protein_id=WP_000573333.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	28048	29019	.	+	.	ID=gene-C9E96_RS07435;Name=srlE;gbkey=Gene;gene=srlE;gene_biotype=protein_coding;locus_tag=C9E96_RS07435;old_locus_tag=C9E96_07615
NZ_PYJX01000084.1	Protein Homology	CDS	28048	29019	.	+	0	ID=cds-WP_000199033.1;Parent=gene-C9E96_RS07435;Dbxref=GenBank:WP_000199033.1;Name=WP_000199033.1;Ontology_term=GO:0009401,GO:0015795,GO:0008982,GO:0016301;gbkey=CDS;gene=srlE;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,kinase activity|0016301||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,sorbitol transmembrane transport|0015795||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461754.1;locus_tag=C9E96_RS07435;product=PTS glucitol/sorbitol transporter subunit IIB;protein_id=WP_000199033.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	29031	29393	.	+	.	ID=gene-C9E96_RS07440;Name=srlB;gbkey=Gene;gene=srlB;gene_biotype=protein_coding;gene_synonym=gutB;locus_tag=C9E96_RS07440;old_locus_tag=C9E96_07620
NZ_PYJX01000084.1	Protein Homology	CDS	29031	29393	.	+	0	ID=cds-WP_000111553.1;Parent=gene-C9E96_RS07440;Dbxref=GenBank:WP_000111553.1;Name=WP_000111553.1;gbkey=CDS;gene=srlB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461755.1;locus_tag=C9E96_RS07440;product=PTS glucitol/sorbitol transporter subunit IIA;protein_id=WP_000111553.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	29405	30184	.	+	.	ID=gene-C9E96_RS07445;Name=srlD;gbkey=Gene;gene=srlD;gene_biotype=protein_coding;locus_tag=C9E96_RS07445;old_locus_tag=C9E96_07625
NZ_PYJX01000084.1	Protein Homology	CDS	29405	30184	.	+	0	ID=cds-WP_135494048.1;Parent=gene-C9E96_RS07445;Dbxref=GenBank:WP_135494048.1;Name=WP_135494048.1;Ontology_term=GO:0016491;gbkey=CDS;gene=srlD;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461756.1;locus_tag=C9E96_RS07445;product=sorbitol-6-phosphate dehydrogenase;protein_id=WP_135494048.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	30261	30620	.	+	.	ID=gene-C9E96_RS07450;Name=gutM;gbkey=Gene;gene=gutM;gene_biotype=protein_coding;locus_tag=C9E96_RS07450;old_locus_tag=C9E96_07630
NZ_PYJX01000084.1	Protein Homology	CDS	30261	30620	.	+	0	ID=cds-WP_000255198.1;Parent=gene-C9E96_RS07450;Dbxref=GenBank:WP_000255198.1;Name=WP_000255198.1;gbkey=CDS;gene=gutM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461757.1;locus_tag=C9E96_RS07450;product=transcriptional regulator GutM;protein_id=WP_000255198.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	30818	31591	.	+	.	ID=gene-C9E96_RS07455;Name=srlR;gbkey=Gene;gene=srlR;gene_biotype=protein_coding;gene_synonym=gutR;locus_tag=C9E96_RS07455;old_locus_tag=C9E96_07635
NZ_PYJX01000084.1	Protein Homology	CDS	30818	31591	.	+	0	ID=cds-WP_000804536.1;Parent=gene-C9E96_RS07455;Dbxref=GenBank:WP_000804536.1;Name=WP_000804536.1;Ontology_term=GO:0045892,GO:0003700;gbkey=CDS;gene=srlR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461758.1;locus_tag=C9E96_RS07455;product=glucitol operon DNA-binding transcriptional repressor SrlR;protein_id=WP_000804536.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	31584	32549	.	+	.	ID=gene-C9E96_RS07460;Name=gutQ;gbkey=Gene;gene=gutQ;gene_biotype=protein_coding;locus_tag=C9E96_RS07460;old_locus_tag=C9E96_07640
NZ_PYJX01000084.1	Protein Homology	CDS	31584	32549	.	+	0	ID=cds-WP_001278201.1;Parent=gene-C9E96_RS07460;Dbxref=GenBank:WP_001278201.1;Name=WP_001278201.1;gbkey=CDS;gene=gutQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311591.2;locus_tag=C9E96_RS07460;product=arabinose-5-phosphate isomerase GutQ;protein_id=WP_001278201.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	32546	34066	.	-	.	ID=gene-C9E96_RS07465;Name=norR;gbkey=Gene;gene=norR;gene_biotype=protein_coding;locus_tag=C9E96_RS07465;old_locus_tag=C9E96_07645
NZ_PYJX01000084.1	Protein Homology	CDS	32546	34066	.	-	0	ID=cds-WP_045342123.1;Parent=gene-C9E96_RS07465;Dbxref=GenBank:WP_045342123.1;Name=WP_045342123.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=norR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461760.1;locus_tag=C9E96_RS07465;product=nitric oxide reductase transcriptional regulator NorR;protein_id=WP_045342123.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	34252	35691	.	+	.	ID=gene-C9E96_RS07470;Name=norV;gbkey=Gene;gene=norV;gene_biotype=protein_coding;locus_tag=C9E96_RS07470;old_locus_tag=C9E96_07650
NZ_PYJX01000084.1	Protein Homology	CDS	34252	35691	.	+	0	ID=cds-WP_080203808.1;Parent=gene-C9E96_RS07470;Dbxref=GenBank:WP_080203808.1;Name=WP_080203808.1;Ontology_term=GO:0009055,GO:0010181,GO:0016966,GO:0046872;gbkey=CDS;gene=norV;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,nitric oxide reductase activity|0016966||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461761.1;locus_tag=C9E96_RS07470;product=anaerobic nitric oxide reductase flavorubredoxin;protein_id=WP_080203808.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	35688	36821	.	+	.	ID=gene-C9E96_RS07475;Name=norW;gbkey=Gene;gene=norW;gene_biotype=protein_coding;locus_tag=C9E96_RS07475;old_locus_tag=C9E96_07655
NZ_PYJX01000084.1	Protein Homology	CDS	35688	36821	.	+	0	ID=cds-WP_058107533.1;Parent=gene-C9E96_RS07475;Dbxref=GenBank:WP_058107533.1;Name=WP_058107533.1;Ontology_term=GO:0016731;gbkey=CDS;gene=norW;go_function=oxidoreductase activity%2C acting on iron-sulfur proteins as donors%2C NAD or NADP as acceptor|0016731||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461762.1;locus_tag=C9E96_RS07475;product=NADH:flavorubredoxin reductase NorW;protein_id=WP_058107533.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	36918	39158	.	-	.	ID=gene-C9E96_RS07480;Name=hypF;gbkey=Gene;gene=hypF;gene_biotype=protein_coding;locus_tag=C9E96_RS07480;old_locus_tag=C9E96_07660
NZ_PYJX01000084.1	Protein Homology	CDS	36918	39158	.	-	0	ID=cds-WP_080203809.1;Parent=gene-C9E96_RS07480;Dbxref=GenBank:WP_080203809.1;Name=WP_080203809.1;Ontology_term=GO:0036211,GO:0003998,GO:0016743,GO:0046872;gbkey=CDS;gene=hypF;go_function=acylphosphatase activity|0003998||IEA,carboxyl- or carbamoyltransferase activity|0016743||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461763.1;locus_tag=C9E96_RS07480;product=carbamoyltransferase HypF;protein_id=WP_080203809.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	39304	39849	.	-	.	ID=gene-C9E96_RS07485;Name=hydN;gbkey=Gene;gene=hydN;gene_biotype=protein_coding;locus_tag=C9E96_RS07485;old_locus_tag=C9E96_07665
NZ_PYJX01000084.1	Protein Homology	CDS	39304	39849	.	-	0	ID=cds-WP_001078791.1;Parent=gene-C9E96_RS07485;Dbxref=GenBank:WP_001078791.1;Name=WP_001078791.1;gbkey=CDS;gene=hydN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461764.1;locus_tag=C9E96_RS07485;product=electron transport protein HydN;protein_id=WP_001078791.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	40050	40859	.	-	.	ID=gene-C9E96_RS07490;Name=C9E96_RS07490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07490;old_locus_tag=C9E96_07670
NZ_PYJX01000084.1	Protein Homology	CDS	40050	40859	.	-	0	ID=cds-WP_000902280.1;Parent=gene-C9E96_RS07490;Dbxref=GenBank:WP_000902280.1;Name=WP_000902280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461765.1;locus_tag=C9E96_RS07490;product=hypothetical protein;protein_id=WP_000902280.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	40886	41356	.	-	.	ID=gene-C9E96_RS07495;Name=hycI;gbkey=Gene;gene=hycI;gene_biotype=protein_coding;locus_tag=C9E96_RS07495;old_locus_tag=C9E96_07675
NZ_PYJX01000084.1	Protein Homology	CDS	40886	41356	.	-	0	ID=cds-WP_000132984.1;Parent=gene-C9E96_RS07495;Dbxref=GenBank:WP_000132984.1;Name=WP_000132984.1;Ontology_term=GO:0036211,GO:0004190;gbkey=CDS;gene=hycI;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461766.1;locus_tag=C9E96_RS07495;product=hydrogenase maturation peptidase HycI;protein_id=WP_000132984.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	41349	41759	.	-	.	ID=gene-C9E96_RS07500;Name=C9E96_RS07500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07500;old_locus_tag=C9E96_07680
NZ_PYJX01000084.1	Protein Homology	CDS	41349	41759	.	-	0	ID=cds-WP_000003725.1;Parent=gene-C9E96_RS07500;Dbxref=GenBank:WP_000003725.1;Name=WP_000003725.1;Ontology_term=GO:0065003;gbkey=CDS;go_process=protein-containing complex assembly|0065003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461767.1;locus_tag=C9E96_RS07500;product=formate hydrogenlyase maturation HycH family protein;protein_id=WP_000003725.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	41756	42523	.	-	.	ID=gene-C9E96_RS07505;Name=hycG;gbkey=Gene;gene=hycG;gene_biotype=protein_coding;locus_tag=C9E96_RS07505;old_locus_tag=C9E96_07685
NZ_PYJX01000084.1	Protein Homology	CDS	41756	42523	.	-	0	ID=cds-WP_000067419.1;Parent=gene-C9E96_RS07505;Dbxref=GenBank:WP_000067419.1;Name=WP_000067419.1;gbkey=CDS;gene=hycG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461768.1;locus_tag=C9E96_RS07505;product=formate hydrogenlyase subunit HycG;protein_id=WP_000067419.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	42523	43065	.	-	.	ID=gene-C9E96_RS07510;Name=hycF;gbkey=Gene;gene=hycF;gene_biotype=protein_coding;locus_tag=C9E96_RS07510;old_locus_tag=C9E96_07690
NZ_PYJX01000084.1	Protein Homology	CDS	42523	43065	.	-	0	ID=cds-WP_000493773.1;Parent=gene-C9E96_RS07510;Dbxref=GenBank:WP_000493773.1;Name=WP_000493773.1;gbkey=CDS;gene=hycF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461769.1;locus_tag=C9E96_RS07510;product=formate hydrogenlyase subunit HycF;protein_id=WP_000493773.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	43075	44784	.	-	.	ID=gene-C9E96_RS07515;Name=hycE;gbkey=Gene;gene=hycE;gene_biotype=protein_coding;locus_tag=C9E96_RS07515;old_locus_tag=C9E96_07695
NZ_PYJX01000084.1	Protein Homology	CDS	43075	44784	.	-	0	ID=cds-WP_135494050.1;Parent=gene-C9E96_RS07515;Dbxref=GenBank:WP_135494050.1;Name=WP_135494050.1;gbkey=CDS;gene=hycE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130590.1;locus_tag=C9E96_RS07515;product=formate hydrogenlyase subunit HycE;protein_id=WP_135494050.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	44802	45725	.	-	.	ID=gene-C9E96_RS07520;Name=C9E96_RS07520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07520;old_locus_tag=C9E96_07700
NZ_PYJX01000084.1	Protein Homology	CDS	44802	45725	.	-	0	ID=cds-WP_000110563.1;Parent=gene-C9E96_RS07520;Dbxref=GenBank:WP_000110563.1;Name=WP_000110563.1;Ontology_term=GO:0022900,GO:0016491,GO:1990204;gbkey=CDS;go_component=oxidoreductase complex|1990204||IEA;go_function=oxidoreductase activity|0016491||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461771.1;locus_tag=C9E96_RS07520;product=respiratory chain complex I subunit 1 family protein;protein_id=WP_000110563.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	45728	47554	.	-	.	ID=gene-C9E96_RS07525;Name=hycC;gbkey=Gene;gene=hycC;gene_biotype=protein_coding;locus_tag=C9E96_RS07525;old_locus_tag=C9E96_07705
NZ_PYJX01000084.1	Protein Homology	CDS	45728	47554	.	-	0	ID=cds-WP_023203977.1;Parent=gene-C9E96_RS07525;Dbxref=GenBank:WP_023203977.1;Name=WP_023203977.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=hycC;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461772.2;locus_tag=C9E96_RS07525;product=formate hydrogenlyase subunit 3;protein_id=WP_023203977.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	47554	48162	.	-	.	ID=gene-C9E96_RS07530;Name=hycB;gbkey=Gene;gene=hycB;gene_biotype=protein_coding;locus_tag=C9E96_RS07530;old_locus_tag=C9E96_07710
NZ_PYJX01000084.1	Protein Homology	CDS	47554	48162	.	-	0	ID=cds-WP_001079164.1;Parent=gene-C9E96_RS07530;Dbxref=GenBank:WP_001079164.1;Name=WP_001079164.1;gbkey=CDS;gene=hycB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461773.1;locus_tag=C9E96_RS07530;product=formate hydrogenlyase subunit HycB;protein_id=WP_001079164.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	48308	48769	.	-	.	ID=gene-C9E96_RS07535;Name=hycA;gbkey=Gene;gene=hycA;gene_biotype=protein_coding;locus_tag=C9E96_RS07535;old_locus_tag=C9E96_07715
NZ_PYJX01000084.1	Protein Homology	CDS	48308	48769	.	-	0	ID=cds-WP_000158074.1;Parent=gene-C9E96_RS07535;Dbxref=GenBank:WP_000158074.1;Name=WP_000158074.1;gbkey=CDS;gene=hycA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461774.1;locus_tag=C9E96_RS07535;product=formate hydrogenlyase regulator HycA;protein_id=WP_000158074.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	48979	49335	.	+	.	ID=gene-C9E96_RS07545;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=C9E96_RS07545;old_locus_tag=C9E96_07725
NZ_PYJX01000084.1	Protein Homology	CDS	48979	49335	.	+	0	ID=cds-WP_000544461.1;Parent=gene-C9E96_RS07545;Dbxref=GenBank:WP_000544461.1;Name=WP_000544461.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461775.1;locus_tag=C9E96_RS07545;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544461.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	49404	50276	.	+	.	ID=gene-C9E96_RS07550;Name=hypB;gbkey=Gene;gene=hypB;gene_biotype=protein_coding;locus_tag=C9E96_RS07550;old_locus_tag=C9E96_07730
NZ_PYJX01000084.1	Protein Homology	CDS	49404	50276	.	+	0	ID=cds-WP_000337636.1;Parent=gene-C9E96_RS07550;Dbxref=GenBank:WP_000337636.1;Name=WP_000337636.1;Ontology_term=GO:0051604,GO:0003924,GO:0016151;gbkey=CDS;gene=hypB;go_function=GTPase activity|0003924||IEA,nickel cation binding|0016151||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461776.1;locus_tag=C9E96_RS07550;product=hydrogenase nickel incorporation protein HypB;protein_id=WP_000337636.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	50267	50539	.	+	.	ID=gene-C9E96_RS07555;Name=hypC;gbkey=Gene;gene=hypC;gene_biotype=protein_coding;locus_tag=C9E96_RS07555;old_locus_tag=C9E96_07735
NZ_PYJX01000084.1	Protein Homology	CDS	50267	50539	.	+	0	ID=cds-WP_000334871.1;Parent=gene-C9E96_RS07555;Dbxref=GenBank:WP_000334871.1;Name=WP_000334871.1;gbkey=CDS;gene=hypC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461777.1;locus_tag=C9E96_RS07555;product=hydrogenase 3 maturation protein HypC;protein_id=WP_000334871.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	50539	51660	.	+	.	ID=gene-C9E96_RS07560;Name=hypD;gbkey=Gene;gene=hypD;gene_biotype=protein_coding;locus_tag=C9E96_RS07560;old_locus_tag=C9E96_07740
NZ_PYJX01000084.1	Protein Homology	CDS	50539	51660	.	+	0	ID=cds-WP_080203810.1;Parent=gene-C9E96_RS07560;Dbxref=GenBank:WP_080203810.1;Name=WP_080203810.1;Ontology_term=GO:0036211,GO:0016530;gbkey=CDS;gene=hypD;go_function=metallochaperone activity|0016530||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461778.2;locus_tag=C9E96_RS07560;product=hydrogenase formation protein HypD;protein_id=WP_080203810.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	51657	52667	.	+	.	ID=gene-C9E96_RS07565;Name=hypE;gbkey=Gene;gene=hypE;gene_biotype=protein_coding;locus_tag=C9E96_RS07565;old_locus_tag=C9E96_07745
NZ_PYJX01000084.1	Protein Homology	CDS	51657	52667	.	+	0	ID=cds-WP_001059962.1;Parent=gene-C9E96_RS07565;Dbxref=GenBank:WP_001059962.1;Name=WP_001059962.1;gbkey=CDS;gene=hypE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417210.2;locus_tag=C9E96_RS07565;product=hydrogenase expression/formation protein HypE;protein_id=WP_001059962.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	52886	54964	.	+	.	ID=gene-C9E96_RS07570;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=C9E96_RS07570;old_locus_tag=C9E96_07750
NZ_PYJX01000084.1	Protein Homology	CDS	52886	54964	.	+	0	ID=cds-WP_000122692.1;Parent=gene-C9E96_RS07570;Dbxref=GenBank:WP_000122692.1;Name=WP_000122692.1;Ontology_term=GO:0006355,GO:0005515,GO:0005524,GO:0008134,GO:0043565;gbkey=CDS;gene=flhA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA,transcription factor binding|0008134||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461780.1;locus_tag=C9E96_RS07570;product=formate hydrogenlyase transcriptional activator FlhA;protein_id=WP_000122692.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	55026	55370	.	-	.	ID=gene-C9E96_RS07575;Name=C9E96_RS07575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07575;old_locus_tag=C9E96_07755
NZ_PYJX01000084.1	Protein Homology	CDS	55026	55370	.	-	0	ID=cds-WP_001117940.1;Parent=gene-C9E96_RS07575;Dbxref=GenBank:WP_001117940.1;Name=WP_001117940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461781.1;locus_tag=C9E96_RS07575;product=nitrous oxide-stimulated promoter family protein;protein_id=WP_001117940.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	55552	56469	.	+	.	ID=gene-C9E96_RS07580;Name=sitA;gbkey=Gene;gene=sitA;gene_biotype=protein_coding;locus_tag=C9E96_RS07580;old_locus_tag=C9E96_07760
NZ_PYJX01000084.1	Protein Homology	CDS	55552	56469	.	+	0	ID=cds-WP_000182930.1;Parent=gene-C9E96_RS07580;Dbxref=GenBank:WP_000182930.1;Name=WP_000182930.1;gbkey=CDS;gene=sitA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461782.1;locus_tag=C9E96_RS07580;product=iron/manganese ABC transporter substrate-binding protein SitA;protein_id=WP_000182930.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	56466	57287	.	+	.	ID=gene-C9E96_RS07585;Name=sitB;gbkey=Gene;gene=sitB;gene_biotype=protein_coding;locus_tag=C9E96_RS07585;old_locus_tag=C9E96_07765
NZ_PYJX01000084.1	Protein Homology	CDS	56466	57287	.	+	0	ID=cds-WP_000083151.1;Parent=gene-C9E96_RS07585;Dbxref=GenBank:WP_000083151.1;Name=WP_000083151.1;gbkey=CDS;gene=sitB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461783.1;locus_tag=C9E96_RS07585;product=iron/manganese ABC transporter ATP-binding protein SitB;protein_id=WP_000083151.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	57284	58144	.	+	.	ID=gene-C9E96_RS07590;Name=sitC;gbkey=Gene;gene=sitC;gene_biotype=protein_coding;locus_tag=C9E96_RS07590;old_locus_tag=C9E96_07770
NZ_PYJX01000084.1	Protein Homology	CDS	57284	58144	.	+	0	ID=cds-WP_001104336.1;Parent=gene-C9E96_RS07590;Dbxref=GenBank:WP_001104336.1;Name=WP_001104336.1;gbkey=CDS;gene=sitC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461784.1;locus_tag=C9E96_RS07590;product=iron/manganese ABC transporter permease subunit SitC;protein_id=WP_001104336.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	58135	58983	.	+	.	ID=gene-C9E96_RS07595;Name=sitD;gbkey=Gene;gene=sitD;gene_biotype=protein_coding;locus_tag=C9E96_RS07595;old_locus_tag=C9E96_07775
NZ_PYJX01000084.1	Protein Homology	CDS	58135	58983	.	+	0	ID=cds-WP_000480209.1;Parent=gene-C9E96_RS07595;Dbxref=GenBank:WP_000480209.1;Name=WP_000480209.1;gbkey=CDS;gene=sitD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461785.1;locus_tag=C9E96_RS07595;product=iron/manganese ABC transporter permease subunit SitD;protein_id=WP_000480209.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	59082	59990	.	-	.	ID=gene-C9E96_RS07600;Name=avrA;gbkey=Gene;gene=avrA;gene_biotype=protein_coding;locus_tag=C9E96_RS07600;old_locus_tag=C9E96_07780
NZ_PYJX01000084.1	Protein Homology	CDS	59082	59990	.	-	0	ID=cds-WP_077905364.1;Parent=gene-C9E96_RS07600;Dbxref=GenBank:WP_077905364.1;Name=WP_077905364.1;gbkey=CDS;gene=avrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461786.1;locus_tag=C9E96_RS07600;product=type III secretion system YopJ family effector AvrA;protein_id=WP_077905364.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	60151	60906	.	-	.	ID=gene-C9E96_RS07605;Name=sprB;gbkey=Gene;gene=sprB;gene_biotype=protein_coding;locus_tag=C9E96_RS07605;old_locus_tag=C9E96_07785
NZ_PYJX01000084.1	Protein Homology	CDS	60151	60906	.	-	0	ID=cds-WP_001246668.1;Parent=gene-C9E96_RS07605;Dbxref=GenBank:WP_001246668.1;Name=WP_001246668.1;gbkey=CDS;gene=sprB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461787.1;locus_tag=C9E96_RS07605;product=transcriptional regulator SprB;protein_id=WP_001246668.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	61291	62178	.	-	.	ID=gene-C9E96_RS07610;Name=hilC;gbkey=Gene;gene=hilC;gene_biotype=protein_coding;locus_tag=C9E96_RS07610;old_locus_tag=C9E96_07790
NZ_PYJX01000084.1	Protein Homology	CDS	61291	62178	.	-	0	ID=cds-WP_000243998.1;Parent=gene-C9E96_RS07610;Dbxref=GenBank:WP_000243998.1;Name=WP_000243998.1;gbkey=CDS;gene=hilC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461788.1;locus_tag=C9E96_RS07610;product=invasion transcriptional regulator HilC;protein_id=WP_000243998.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	62514	62966	.	-	.	ID=gene-C9E96_RS07615;Name=C9E96_RS07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07615;old_locus_tag=C9E96_07795
NZ_PYJX01000084.1	Protein Homology	CDS	62514	62966	.	-	0	ID=cds-WP_000612179.1;Parent=gene-C9E96_RS07615;Dbxref=GenBank:WP_000612179.1;Name=WP_000612179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461789.1;locus_tag=C9E96_RS07615;product=type III secretion system effector protein OrgC;protein_id=WP_000612179.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	62963	63643	.	-	.	ID=gene-C9E96_RS07620;Name=orgB;gbkey=Gene;gene=orgB;gene_biotype=protein_coding;locus_tag=C9E96_RS07620;old_locus_tag=C9E96_07800
NZ_PYJX01000084.1	Protein Homology	CDS	62963	63643	.	-	0	ID=cds-WP_000916654.1;Parent=gene-C9E96_RS07620;Dbxref=GenBank:WP_000916654.1;Name=WP_000916654.1;gbkey=CDS;gene=orgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461790.1;locus_tag=C9E96_RS07620;product=type III secretion system linker protein OrgB;protein_id=WP_000916654.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	63600	64199	.	-	.	ID=gene-C9E96_RS07625;Name=orgA;gbkey=Gene;gene=orgA;gene_biotype=protein_coding;locus_tag=C9E96_RS07625;old_locus_tag=C9E96_07805
NZ_PYJX01000084.1	Protein Homology	CDS	63600	64199	.	-	0	ID=cds-WP_001574876.1;Parent=gene-C9E96_RS07625;Dbxref=GenBank:WP_001574876.1;Name=WP_001574876.1;gbkey=CDS;gene=orgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461791.1;locus_tag=C9E96_RS07625;product=oxygen-regulated invasion protein OrgA;protein_id=WP_001574876.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	64171	64929	.	-	.	ID=gene-C9E96_RS07630;Name=prgK;gbkey=Gene;gene=prgK;gene_biotype=protein_coding;locus_tag=C9E96_RS07630;old_locus_tag=C9E96_07810
NZ_PYJX01000084.1	Protein Homology	CDS	64171	64929	.	-	0	ID=cds-WP_000621238.1;Parent=gene-C9E96_RS07630;Dbxref=GenBank:WP_000621238.1;Name=WP_000621238.1;gbkey=CDS;gene=prgK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461792.1;locus_tag=C9E96_RS07630;product=type III secretion system inner membrane ring lipoprotein PrgK;protein_id=WP_000621238.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	64926	65231	.	-	.	ID=gene-C9E96_RS07635;Name=prgJ;gbkey=Gene;gene=prgJ;gene_biotype=protein_coding;locus_tag=C9E96_RS07635;old_locus_tag=C9E96_07815
NZ_PYJX01000084.1	Protein Homology	CDS	64926	65231	.	-	0	ID=cds-WP_000020431.1;Parent=gene-C9E96_RS07635;Dbxref=GenBank:WP_000020431.1;Name=WP_000020431.1;gbkey=CDS;gene=prgJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461793.1;locus_tag=C9E96_RS07635;product=type III secretion system inner rod protein PrgJ;protein_id=WP_000020431.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	65250	65492	.	-	.	ID=gene-C9E96_RS07640;Name=prgI;gbkey=Gene;gene=prgI;gene_biotype=protein_coding;locus_tag=C9E96_RS07640;old_locus_tag=C9E96_07820
NZ_PYJX01000084.1	Protein Homology	CDS	65250	65492	.	-	0	ID=cds-WP_000235228.1;Parent=gene-C9E96_RS07640;Dbxref=GenBank:WP_000235228.1;Name=WP_000235228.1;gbkey=CDS;gene=prgI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461794.1;locus_tag=C9E96_RS07640;product=type III secretion system needle filament protein PrgI;protein_id=WP_000235228.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	65517	66695	.	-	.	ID=gene-C9E96_RS07645;Name=prgH;gbkey=Gene;gene=prgH;gene_biotype=protein_coding;locus_tag=C9E96_RS07645;old_locus_tag=C9E96_07825
NZ_PYJX01000084.1	Protein Homology	CDS	65517	66695	.	-	0	ID=cds-WP_000450196.1;Parent=gene-C9E96_RS07645;Dbxref=GenBank:WP_000450196.1;Name=WP_000450196.1;gbkey=CDS;gene=prgH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461795.1;locus_tag=C9E96_RS07645;product=type III secretion system inner membrane ring protein PrgH;protein_id=WP_000450196.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	67011	67940	.	+	.	ID=gene-C9E96_RS07650;Name=hilD;gbkey=Gene;gene=hilD;gene_biotype=protein_coding;locus_tag=C9E96_RS07650;old_locus_tag=C9E96_07830
NZ_PYJX01000084.1	Protein Homology	CDS	67011	67940	.	+	0	ID=cds-WP_000432700.1;Parent=gene-C9E96_RS07650;Dbxref=GenBank:WP_000432700.1;Name=WP_000432700.1;gbkey=CDS;gene=hilD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461796.1;locus_tag=C9E96_RS07650;product=transcriptional regulator HilD;protein_id=WP_000432700.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	69031	70692	.	+	.	ID=gene-C9E96_RS07655;Name=hilA;gbkey=Gene;gene=hilA;gene_biotype=protein_coding;locus_tag=C9E96_RS07655;old_locus_tag=C9E96_07835
NZ_PYJX01000084.1	Protein Homology	CDS	69031	70692	.	+	0	ID=cds-WP_001120086.1;Parent=gene-C9E96_RS07655;Dbxref=GenBank:WP_001120086.1;Name=WP_001120086.1;gbkey=CDS;gene=hilA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461797.1;locus_tag=C9E96_RS07655;product=transcriptional regulator HilA;protein_id=WP_001120086.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	70710	71192	.	+	.	ID=gene-C9E96_RS07660;Name=iagB;gbkey=Gene;gene=iagB;gene_biotype=protein_coding;locus_tag=C9E96_RS07660;old_locus_tag=C9E96_07840
NZ_PYJX01000084.1	Protein Homology	CDS	70710	71192	.	+	0	ID=cds-WP_000558928.1;Parent=gene-C9E96_RS07660;Dbxref=GenBank:WP_000558928.1;Name=WP_000558928.1;gbkey=CDS;gene=iagB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461798.1;locus_tag=C9E96_RS07660;product=SPI-1 type III secretion system invasion protein IagB;protein_id=WP_000558928.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	pseudogene	71246	72877	.	-	.	ID=gene-C9E96_RS07665;Name=sptP;gbkey=Gene;gene=sptP;gene_biotype=pseudogene;locus_tag=C9E96_RS07665;old_locus_tag=C9E96_07845;pseudo=true
NZ_PYJX01000084.1	Protein Homology	CDS	71246	72877	.	-	0	ID=cds-C9E96_RS07665;Parent=gene-C9E96_RS07665;Note=internal stop;gbkey=CDS;gene=sptP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461799.1;locus_tag=C9E96_RS07665;product=SPI-1 type III secretion system effector GTPase-activating protein SptP;pseudo=true;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	72864	73256	.	-	.	ID=gene-C9E96_RS07670;Name=sicP;gbkey=Gene;gene=sicP;gene_biotype=protein_coding;locus_tag=C9E96_RS07670;old_locus_tag=C9E96_07850
NZ_PYJX01000084.1	Protein Homology	CDS	72864	73256	.	-	0	ID=cds-WP_001147852.1;Parent=gene-C9E96_RS07670;Dbxref=GenBank:WP_001147852.1;Name=WP_001147852.1;gbkey=CDS;gene=sicP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461800.1;locus_tag=C9E96_RS07670;product=chaperone SicP;protein_id=WP_001147852.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	73283	73543	.	-	.	ID=gene-C9E96_RS07675;Name=C9E96_RS07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07675;old_locus_tag=C9E96_07855
NZ_PYJX01000084.1	Protein Homology	CDS	73283	73543	.	-	0	ID=cds-WP_000692254.1;Parent=gene-C9E96_RS07675;Dbxref=GenBank:WP_000692254.1;Name=WP_000692254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_449260.1;locus_tag=C9E96_RS07675;product=hypothetical protein;protein_id=WP_000692254.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	73587	73835	.	-	.	ID=gene-C9E96_RS07680;Name=C9E96_RS07680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07680;old_locus_tag=C9E96_07860
NZ_PYJX01000084.1	Protein Homology	CDS	73587	73835	.	-	0	ID=cds-WP_001055579.1;Parent=gene-C9E96_RS07680;Dbxref=GenBank:WP_001055579.1;Name=WP_001055579.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461802.1;locus_tag=C9E96_RS07680;product=acyl carrier protein;protein_id=WP_001055579.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	73854	75911	.	-	.	ID=gene-C9E96_RS07685;Name=sipA;gbkey=Gene;gene=sipA;gene_biotype=protein_coding;locus_tag=C9E96_RS07685;old_locus_tag=C9E96_07865
NZ_PYJX01000084.1	Protein Homology	CDS	73854	75911	.	-	0	ID=cds-WP_135494052.1;Parent=gene-C9E96_RS07685;Dbxref=GenBank:WP_135494052.1;Name=WP_135494052.1;gbkey=CDS;gene=sipA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461803.1;locus_tag=C9E96_RS07685;product=SPI-1 type III secretion system effector SipA;protein_id=WP_135494052.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	75930	76961	.	-	.	ID=gene-C9E96_RS07690;Name=sipD;gbkey=Gene;gene=sipD;gene_biotype=protein_coding;locus_tag=C9E96_RS07690;old_locus_tag=C9E96_07870
NZ_PYJX01000084.1	Protein Homology	CDS	75930	76961	.	-	0	ID=cds-WP_000932249.1;Parent=gene-C9E96_RS07690;Dbxref=GenBank:WP_000932249.1;Name=WP_000932249.1;gbkey=CDS;gene=sipD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461804.1;locus_tag=C9E96_RS07690;product=SPI-1 type III secretion system needle tip complex protein SipD;protein_id=WP_000932249.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	77032	78261	.	-	.	ID=gene-C9E96_RS07695;Name=sipC;gbkey=Gene;gene=sipC;gene_biotype=protein_coding;locus_tag=C9E96_RS07695;old_locus_tag=C9E96_07875
NZ_PYJX01000084.1	Protein Homology	CDS	77032	78261	.	-	0	ID=cds-WP_000909019.1;Parent=gene-C9E96_RS07695;Dbxref=GenBank:WP_000909019.1;Name=WP_000909019.1;gbkey=CDS;gene=sipC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461805.1;locus_tag=C9E96_RS07695;product=SPI-1 type III secretion system needle tip complex protein SipC;protein_id=WP_000909019.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	78289	80070	.	-	.	ID=gene-C9E96_RS07700;Name=sipB;gbkey=Gene;gene=sipB;gene_biotype=protein_coding;locus_tag=C9E96_RS07700;old_locus_tag=C9E96_07880
NZ_PYJX01000084.1	Protein Homology	CDS	78289	80070	.	-	0	ID=cds-WP_000245788.1;Parent=gene-C9E96_RS07700;Dbxref=GenBank:WP_000245788.1;Name=WP_000245788.1;gbkey=CDS;gene=sipB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461806.1;locus_tag=C9E96_RS07700;product=SPI-1 type III secretion system needle tip complex protein SipB;protein_id=WP_000245788.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	80073	80570	.	-	.	ID=gene-C9E96_RS07705;Name=sicA;gbkey=Gene;gene=sicA;gene_biotype=protein_coding;locus_tag=C9E96_RS07705;old_locus_tag=C9E96_07885
NZ_PYJX01000084.1	Protein Homology	CDS	80073	80570	.	-	0	ID=cds-WP_080203811.1;Parent=gene-C9E96_RS07705;Dbxref=GenBank:WP_080203811.1;Name=WP_080203811.1;gbkey=CDS;gene=sicA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461807.1;locus_tag=C9E96_RS07705;product=SycD/LcrH family type III secretion system chaperone SicA;protein_id=WP_080203811.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	80708	81778	.	-	.	ID=gene-C9E96_RS07710;Name=spaS;gbkey=Gene;gene=spaS;gene_biotype=protein_coding;locus_tag=C9E96_RS07710;old_locus_tag=C9E96_07890
NZ_PYJX01000084.1	Protein Homology	CDS	80708	81778	.	-	0	ID=cds-WP_000097717.1;Parent=gene-C9E96_RS07710;Dbxref=GenBank:WP_000097717.1;Name=WP_000097717.1;gbkey=CDS;gene=spaS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461808.1;locus_tag=C9E96_RS07710;product=SPI-1 type III secretion system export apparatus protein SpaS;protein_id=WP_000097717.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	81765	82556	.	-	.	ID=gene-C9E96_RS07715;Name=spaR;gbkey=Gene;gene=spaR;gene_biotype=protein_coding;locus_tag=C9E96_RS07715;old_locus_tag=C9E96_07895
NZ_PYJX01000084.1	Protein Homology	CDS	81765	82556	.	-	0	ID=cds-WP_000498965.1;Parent=gene-C9E96_RS07715;Dbxref=GenBank:WP_000498965.1;Name=WP_000498965.1;gbkey=CDS;gene=spaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461809.1;locus_tag=C9E96_RS07715;product=SPI-1 type III secretion system export apparatus protein SpaR;protein_id=WP_000498965.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	82560	82820	.	-	.	ID=gene-C9E96_RS07720;Name=spaQ;gbkey=Gene;gene=spaQ;gene_biotype=protein_coding;locus_tag=C9E96_RS07720;old_locus_tag=C9E96_07900
NZ_PYJX01000084.1	Protein Homology	CDS	82560	82820	.	-	0	ID=cds-WP_000342503.1;Parent=gene-C9E96_RS07720;Dbxref=GenBank:WP_000342503.1;Name=WP_000342503.1;gbkey=CDS;gene=spaQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461810.1;locus_tag=C9E96_RS07720;product=SPI-1 type III secretion system export apparatus protein SpaQ;protein_id=WP_000342503.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	gene	82846	83520	.	-	.	ID=gene-C9E96_RS07725;Name=spaP;gbkey=Gene;gene=spaP;gene_biotype=protein_coding;locus_tag=C9E96_RS07725;old_locus_tag=C9E96_07905
NZ_PYJX01000084.1	Protein Homology	CDS	82846	83520	.	-	0	ID=cds-WP_000526014.1;Parent=gene-C9E96_RS07725;Dbxref=GenBank:WP_000526014.1;Name=WP_000526014.1;gbkey=CDS;gene=spaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461811.1;locus_tag=C9E96_RS07725;product=SPI-1 type III secretion system export apparatus protein SpaP;protein_id=WP_000526014.1;transl_table=11
NZ_PYJX01000084.1	RefSeq	pseudogene	83510	84055	.	-	.	ID=gene-C9E96_RS07730;Name=spaO;end_range=84055,.;gbkey=Gene;gene=spaO;gene_biotype=pseudogene;locus_tag=C9E96_RS07730;old_locus_tag=C9E96_07910;partial=true;pseudo=true
NZ_PYJX01000084.1	Protein Homology	CDS	83510	84055	.	-	0	ID=cds-C9E96_RS07730;Parent=gene-C9E96_RS07730;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=84055,.;gbkey=CDS;gene=spaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461812.1;locus_tag=C9E96_RS07730;partial=true;product=SPI-1 type III secretion system protein SpaO;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000050.1 1 21219
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000050.1	RefSeq	region	1	21219	.	+	.	ID=NZ_PYJX01000050.1:1..21219;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000050.1	RefSeq	gene	1	2586	.	-	.	ID=gene-C9E96_RS04370;Name=C9E96_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04370;old_locus_tag=C9E96_04470;partial=true;start_range=.,1
NZ_PYJX01000050.1	Protein Homology	CDS	1	2586	.	-	0	ID=cds-WP_135493876.1;Parent=gene-C9E96_RS04370;Dbxref=GenBank:WP_135493876.1;Name=WP_135493876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001237670.1;locus_tag=C9E96_RS04370;partial=true;product=Ig-like domain-containing protein;protein_id=WP_135493876.1;start_range=.,1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	3204	3686	.	-	.	ID=gene-C9E96_RS04375;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=C9E96_RS04375;old_locus_tag=C9E96_04475
NZ_PYJX01000050.1	Protein Homology	CDS	3204	3686	.	-	0	ID=cds-WP_001518569.1;Parent=gene-C9E96_RS04375;Dbxref=GenBank:WP_001518569.1;Name=WP_001518569.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461618.1;locus_tag=C9E96_RS04375;product=SsrA-binding protein SmpB;protein_id=WP_001518569.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	3875	4312	.	+	.	ID=gene-C9E96_RS04380;Name=C9E96_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04380;old_locus_tag=C9E96_04480
NZ_PYJX01000050.1	Protein Homology	CDS	3875	4312	.	+	0	ID=cds-WP_001537508.1;Parent=gene-C9E96_RS04380;Dbxref=GenBank:WP_001537508.1;Name=WP_001537508.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001543334.1;locus_tag=C9E96_RS04380;product=type II toxin-antitoxin system RatA family toxin;protein_id=WP_001537508.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	4302	4592	.	+	.	ID=gene-C9E96_RS04385;Name=C9E96_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04385;old_locus_tag=C9E96_04485
NZ_PYJX01000050.1	Protein Homology	CDS	4302	4592	.	+	0	ID=cds-WP_001112990.1;Parent=gene-C9E96_RS04385;Dbxref=GenBank:WP_001112990.1;Name=WP_001112990.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461616.1;locus_tag=C9E96_RS04385;product=RnfH family protein;protein_id=WP_001112990.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	4758	5096	.	-	.	ID=gene-C9E96_RS04390;Name=bamE;gbkey=Gene;gene=bamE;gene_biotype=protein_coding;locus_tag=C9E96_RS04390;old_locus_tag=C9E96_04490
NZ_PYJX01000050.1	Protein Homology	CDS	4758	5096	.	-	0	ID=cds-WP_001203445.1;Parent=gene-C9E96_RS04390;Dbxref=GenBank:WP_001203445.1;Name=WP_001203445.1;gbkey=CDS;gene=bamE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461615.1;locus_tag=C9E96_RS04390;product=outer membrane protein assembly factor BamE;protein_id=WP_001203445.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	5245	6906	.	-	.	ID=gene-C9E96_RS04395;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=C9E96_RS04395;old_locus_tag=C9E96_04495
NZ_PYJX01000050.1	Protein Homology	CDS	5245	6906	.	-	0	ID=cds-WP_080204055.1;Parent=gene-C9E96_RS04395;Dbxref=GenBank:WP_080204055.1;Name=WP_080204055.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461614.1;locus_tag=C9E96_RS04395;product=DNA repair protein RecN;protein_id=WP_080204055.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	6992	7870	.	-	.	ID=gene-C9E96_RS04400;Name=nadK;gbkey=Gene;gene=nadK;gene_biotype=protein_coding;locus_tag=C9E96_RS04400;old_locus_tag=C9E96_04500
NZ_PYJX01000050.1	Protein Homology	CDS	6992	7870	.	-	0	ID=cds-WP_001059155.1;Parent=gene-C9E96_RS04400;Dbxref=GenBank:WP_001059155.1;Name=WP_001059155.1;Ontology_term=GO:0003951;gbkey=CDS;gene=nadK;go_function=NAD+ kinase activity|0003951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239499.1;locus_tag=C9E96_RS04400;product=NAD(+) kinase;protein_id=WP_001059155.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	7994	8584	.	+	.	ID=gene-C9E96_RS04410;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=C9E96_RS04410;old_locus_tag=C9E96_04510
NZ_PYJX01000050.1	Protein Homology	CDS	7994	8584	.	+	0	ID=cds-WP_001518875.1;Parent=gene-C9E96_RS04410;Dbxref=GenBank:WP_001518875.1;Name=WP_001518875.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461611.1;locus_tag=C9E96_RS04410;product=nucleotide exchange factor GrpE;protein_id=WP_001518875.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	8619	9224	.	-	.	ID=gene-C9E96_RS04415;Name=C9E96_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04415;old_locus_tag=C9E96_04515
NZ_PYJX01000050.1	Protein Homology	CDS	8619	9224	.	-	0	ID=cds-WP_135493878.1;Parent=gene-C9E96_RS04415;Dbxref=GenBank:WP_135493878.1;Name=WP_135493878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461610.1;locus_tag=C9E96_RS04415;product=DUF6630 family protein;protein_id=WP_135493878.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	9345	10631	.	-	.	ID=gene-C9E96_RS04420;Name=C9E96_RS04420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04420;old_locus_tag=C9E96_04520
NZ_PYJX01000050.1	Protein Homology	CDS	9345	10631	.	-	0	ID=cds-WP_135493880.1;Parent=gene-C9E96_RS04420;Dbxref=GenBank:WP_135493880.1;Name=WP_135493880.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026171.3;locus_tag=C9E96_RS04420;product=HlyC/CorC family transporter;protein_id=WP_135493880.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	10651	11442	.	-	.	ID=gene-C9E96_RS04425;Name=C9E96_RS04425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04425;old_locus_tag=C9E96_04525
NZ_PYJX01000050.1	Protein Homology	CDS	10651	11442	.	-	0	ID=cds-WP_001537507.1;Parent=gene-C9E96_RS04425;Dbxref=GenBank:WP_001537507.1;Name=WP_001537507.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461608.1;locus_tag=C9E96_RS04425;product=cytochrome C assembly family protein;protein_id=WP_001537507.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	11608	12969	.	+	.	ID=gene-C9E96_RS04435;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=C9E96_RS04435;old_locus_tag=C9E96_04535
NZ_PYJX01000050.1	Protein Homology	CDS	11608	12969	.	+	0	ID=cds-WP_135493882.1;Parent=gene-C9E96_RS04435;Dbxref=GenBank:WP_135493882.1;Name=WP_135493882.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0005525,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA,GTP binding|0005525||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130432.1;locus_tag=C9E96_RS04435;product=signal recognition particle protein;protein_id=WP_135493882.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	13222	13470	.	+	.	ID=gene-C9E96_RS04440;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=C9E96_RS04440;old_locus_tag=C9E96_04540
NZ_PYJX01000050.1	Protein Homology	CDS	13222	13470	.	+	0	ID=cds-WP_000256453.1;Parent=gene-C9E96_RS04440;Dbxref=GenBank:WP_000256453.1;Name=WP_000256453.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000256453.1;locus_tag=C9E96_RS04440;product=30S ribosomal protein S16;protein_id=WP_000256453.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	13489	14037	.	+	.	ID=gene-C9E96_RS04445;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=C9E96_RS04445;old_locus_tag=C9E96_04545
NZ_PYJX01000050.1	Protein Homology	CDS	13489	14037	.	+	0	ID=cds-WP_135493884.1;Parent=gene-C9E96_RS04445;Dbxref=GenBank:WP_135493884.1;Name=WP_135493884.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0043022,GO:0005840;gbkey=CDS;gene=rimM;go_component=ribosome|0005840||IEA;go_function=ribosome binding|0043022||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000043333.1;locus_tag=C9E96_RS04445;product=ribosome maturation factor RimM;protein_id=WP_135493884.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	14082	14849	.	+	.	ID=gene-C9E96_RS04450;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=C9E96_RS04450;old_locus_tag=C9E96_04550
NZ_PYJX01000050.1	Protein Homology	CDS	14082	14849	.	+	0	ID=cds-WP_000469807.1;Parent=gene-C9E96_RS04450;Dbxref=GenBank:WP_000469807.1;Name=WP_000469807.1;Ontology_term=GO:0030488,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N1)-methyltransferase activity|0052906||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461604.1;locus_tag=C9E96_RS04450;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_000469807.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	14890	15237	.	+	.	ID=gene-C9E96_RS04455;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=C9E96_RS04455;old_locus_tag=C9E96_04555
NZ_PYJX01000050.1	Protein Homology	CDS	14890	15237	.	+	0	ID=cds-WP_000065257.1;Parent=gene-C9E96_RS04455;Dbxref=GenBank:WP_000065257.1;Name=WP_000065257.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012768745.1;locus_tag=C9E96_RS04455;product=50S ribosomal protein L19;protein_id=WP_000065257.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	15393	16613	.	-	.	ID=gene-C9E96_RS04460;Name=dgcN;gbkey=Gene;gene=dgcN;gene_biotype=protein_coding;locus_tag=C9E96_RS04460;old_locus_tag=C9E96_04560
NZ_PYJX01000050.1	Protein Homology	CDS	15393	16613	.	-	0	ID=cds-WP_001030989.1;Parent=gene-C9E96_RS04460;Dbxref=GenBank:WP_001030989.1;Name=WP_001030989.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;gene=dgcN;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461602.1;locus_tag=C9E96_RS04460;product=diguanylate cyclase DgcN;protein_id=WP_001030989.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	16606	17124	.	-	.	ID=gene-C9E96_RS04465;Name=C9E96_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04465;old_locus_tag=C9E96_04565
NZ_PYJX01000050.1	Protein Homology	CDS	16606	17124	.	-	0	ID=cds-WP_079827262.1;Parent=gene-C9E96_RS04465;Dbxref=GenBank:WP_079827262.1;Name=WP_079827262.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461601.1;locus_tag=C9E96_RS04465;product=YfiR family protein;protein_id=WP_079827262.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	17564	18634	.	+	.	ID=gene-C9E96_RS04470;Name=aroF;gbkey=Gene;gene=aroF;gene_biotype=protein_coding;locus_tag=C9E96_RS04470;old_locus_tag=C9E96_04570
NZ_PYJX01000050.1	Protein Homology	CDS	17564	18634	.	+	0	ID=cds-WP_001168062.1;Parent=gene-C9E96_RS04470;Dbxref=GenBank:WP_001168062.1;Name=WP_001168062.1;gbkey=CDS;gene=aroF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461600.1;locus_tag=C9E96_RS04470;product=3-deoxy-7-phosphoheptulonate synthase AroF;protein_id=WP_001168062.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	18644	19765	.	+	.	ID=gene-C9E96_RS04475;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=C9E96_RS04475;old_locus_tag=C9E96_04575
NZ_PYJX01000050.1	Protein Homology	CDS	18644	19765	.	+	0	ID=cds-WP_058344343.1;Parent=gene-C9E96_RS04475;Dbxref=GenBank:WP_058344343.1;Name=WP_058344343.1;Ontology_term=GO:0006571,GO:0046417,GO:0004106,GO:0004665,GO:0008977;gbkey=CDS;gene=tyrA;go_function=chorismate mutase activity|0004106||IEA,prephenate dehydrogenase (NADP+) activity|0004665||IEA,prephenate dehydrogenase (NAD+) activity|0008977||IEA;go_process=tyrosine biosynthetic process|0006571||IEA,chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461599.1;locus_tag=C9E96_RS04475;product=bifunctional chorismate mutase/prephenate dehydrogenase;protein_id=WP_058344343.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	19823	20731	.	+	.	ID=gene-C9E96_RS04480;Name=C9E96_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04480;old_locus_tag=C9E96_04580
NZ_PYJX01000050.1	Protein Homology	CDS	19823	20731	.	+	0	ID=cds-WP_080182478.1;Parent=gene-C9E96_RS04480;Dbxref=GenBank:WP_080182478.1;Name=WP_080182478.1;Ontology_term=GO:0005509,GO:0016787,GO:0046872;gbkey=CDS;go_function=calcium ion binding|0005509||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461598.1;locus_tag=C9E96_RS04480;product=SMP-30/gluconolactonase/LRE family protein;protein_id=WP_080182478.1;transl_table=11
NZ_PYJX01000050.1	RefSeq	gene	20692	21219	.	-	.	ID=gene-C9E96_RS04485;Name=C9E96_RS04485;end_range=21219,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS04485;old_locus_tag=C9E96_04585;partial=true
NZ_PYJX01000050.1	Protein Homology	CDS	20692	21219	.	-	0	ID=cds-WP_280951849.1;Parent=gene-C9E96_RS04485;Dbxref=GenBank:WP_280951849.1;Name=WP_280951849.1;Ontology_term=GO:0009094,GO:0004664;end_range=21219,.;gbkey=CDS;go_function=prephenate dehydratase activity|0004664||IEA;go_process=L-phenylalanine biosynthetic process|0009094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461597.1;locus_tag=C9E96_RS04485;partial=true;product=prephenate dehydratase domain-containing protein;protein_id=WP_280951849.1;transl_table=11
##sequence-region NZ_PYJX01000145.1 1 21161
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000145.1	RefSeq	region	1	21161	.	+	.	ID=NZ_PYJX01000145.1:1..21161;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000145.1	RefSeq	pseudogene	44	337	.	+	.	ID=gene-C9E96_RS12910;Name=C9E96_RS12910;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS12910;old_locus_tag=C9E96_13220;partial=true;pseudo=true;start_range=.,44
NZ_PYJX01000145.1	Protein Homology	CDS	44	337	.	+	0	ID=cds-C9E96_RS12910;Parent=gene-C9E96_RS12910;Note=protein p43%3B inner membrane protein that exports enterobactin to the periplasmic space%3B member of the major facilitator superfamily (MFS) of transporters%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459585.1;locus_tag=C9E96_RS12910;partial=true;product=enterobactin transporter EntS;pseudo=true;start_range=.,44;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	400	1356	.	-	.	ID=gene-C9E96_RS12915;Name=fepB;gbkey=Gene;gene=fepB;gene_biotype=protein_coding;locus_tag=C9E96_RS12915;old_locus_tag=C9E96_13225
NZ_PYJX01000145.1	Protein Homology	CDS	400	1356	.	-	0	ID=cds-WP_001238992.1;Parent=gene-C9E96_RS12915;Dbxref=GenBank:WP_001238992.1;Name=WP_001238992.1;gbkey=CDS;gene=fepB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459586.1;locus_tag=C9E96_RS12915;product=Fe2+-enterobactin ABC transporter substrate-binding protein;protein_id=WP_001238992.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	1665	2840	.	+	.	ID=gene-C9E96_RS12920;Name=entC;gbkey=Gene;gene=entC;gene_biotype=protein_coding;locus_tag=C9E96_RS12920;old_locus_tag=C9E96_13230
NZ_PYJX01000145.1	Protein Homology	CDS	1665	2840	.	+	0	ID=cds-WP_000367596.1;Parent=gene-C9E96_RS12920;Dbxref=GenBank:WP_000367596.1;Name=WP_000367596.1;Ontology_term=GO:0008909;gbkey=CDS;gene=entC;go_function=isochorismate synthase activity|0008909||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459587.1;locus_tag=C9E96_RS12920;product=isochorismate synthase EntC;protein_id=WP_000367596.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	2850	4460	.	+	.	ID=gene-C9E96_RS12925;Name=entE;gbkey=Gene;gene=entE;gene_biotype=protein_coding;locus_tag=C9E96_RS12925;old_locus_tag=C9E96_13235
NZ_PYJX01000145.1	Protein Homology	CDS	2850	4460	.	+	0	ID=cds-WP_135494280.1;Parent=gene-C9E96_RS12925;Dbxref=GenBank:WP_135494280.1;Name=WP_135494280.1;gbkey=CDS;gene=entE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459588.1;locus_tag=C9E96_RS12925;product=(2%2C3-dihydroxybenzoyl)adenylate synthase EntE;protein_id=WP_135494280.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	4474	5331	.	+	.	ID=gene-C9E96_RS12930;Name=C9E96_RS12930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12930;old_locus_tag=C9E96_13240
NZ_PYJX01000145.1	Protein Homology	CDS	4474	5331	.	+	0	ID=cds-WP_001007166.1;Parent=gene-C9E96_RS12930;Dbxref=GenBank:WP_001007166.1;Name=WP_001007166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459589.1;locus_tag=C9E96_RS12930;product=isochorismatase;protein_id=WP_001007166.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	5331	6086	.	+	.	ID=gene-C9E96_RS12935;Name=entA;gbkey=Gene;gene=entA;gene_biotype=protein_coding;locus_tag=C9E96_RS12935;old_locus_tag=C9E96_13245
NZ_PYJX01000145.1	Protein Homology	CDS	5331	6086	.	+	0	ID=cds-WP_021000048.1;Parent=gene-C9E96_RS12935;Dbxref=GenBank:WP_021000048.1;Name=WP_021000048.1;gbkey=CDS;gene=entA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459590.1;locus_tag=C9E96_RS12935;product=2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase EntA;protein_id=WP_021000048.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	6089	6502	.	+	.	ID=gene-C9E96_RS12940;Name=entH;gbkey=Gene;gene=entH;gene_biotype=protein_coding;locus_tag=C9E96_RS12940;old_locus_tag=C9E96_13250
NZ_PYJX01000145.1	Protein Homology	CDS	6089	6502	.	+	0	ID=cds-WP_000637966.1;Parent=gene-C9E96_RS12940;Dbxref=GenBank:WP_000637966.1;Name=WP_000637966.1;gbkey=CDS;gene=entH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459591.1;locus_tag=C9E96_RS12940;product=proofreading thioesterase EntH;protein_id=WP_000637966.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	6684	8789	.	+	.	ID=gene-C9E96_RS12945;Name=cstA;gbkey=Gene;gene=cstA;gene_biotype=protein_coding;locus_tag=C9E96_RS12945;old_locus_tag=C9E96_13255
NZ_PYJX01000145.1	Protein Homology	CDS	6684	8789	.	+	0	ID=cds-WP_135494275.1;Parent=gene-C9E96_RS12945;Dbxref=GenBank:WP_135494275.1;Name=WP_135494275.1;Ontology_term=GO:0009267;gbkey=CDS;gene=cstA;go_process=cellular response to starvation|0009267||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459592.1;locus_tag=C9E96_RS12945;product=pyruvate/proton symporter CstA;protein_id=WP_135494275.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	8853	9050	.	+	.	ID=gene-C9E96_RS12950;Name=C9E96_RS12950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12950;old_locus_tag=C9E96_13260
NZ_PYJX01000145.1	Protein Homology	CDS	8853	9050	.	+	0	ID=cds-WP_000460619.1;Parent=gene-C9E96_RS12950;Dbxref=GenBank:WP_000460619.1;Name=WP_000460619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904950.1;locus_tag=C9E96_RS12950;product=YbdD/YjiX family protein;protein_id=WP_000460619.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	9086	10174	.	-	.	ID=gene-C9E96_RS12955;Name=C9E96_RS12955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12955;old_locus_tag=C9E96_13265
NZ_PYJX01000145.1	Protein Homology	CDS	9086	10174	.	-	0	ID=cds-WP_001016847.1;Parent=gene-C9E96_RS12955;Dbxref=GenBank:WP_001016847.1;Name=WP_001016847.1;Ontology_term=GO:0016491,GO:0046872;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459594.1;locus_tag=C9E96_RS12955;product=oxidoreductase;protein_id=WP_001016847.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	10301	11461	.	+	.	ID=gene-C9E96_RS12960;Name=C9E96_RS12960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12960;old_locus_tag=C9E96_13270
NZ_PYJX01000145.1	Protein Homology	CDS	10301	11461	.	+	0	ID=cds-WP_135369851.1;Parent=gene-C9E96_RS12960;Dbxref=GenBank:WP_135369851.1;Name=WP_135369851.1;Ontology_term=GO:0008483,GO:0016740;gbkey=CDS;go_function=transaminase activity|0008483||IEA,transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459595.1;locus_tag=C9E96_RS12960;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_135369851.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	11462	12079	.	-	.	ID=gene-C9E96_RS12965;Name=C9E96_RS12965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12965;old_locus_tag=C9E96_13275
NZ_PYJX01000145.1	Protein Homology	CDS	11462	12079	.	-	0	ID=cds-WP_001164755.1;Parent=gene-C9E96_RS12965;Dbxref=GenBank:WP_001164755.1;Name=WP_001164755.1;Ontology_term=GO:0071453,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cellular response to oxygen levels|0071453||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459596.1;locus_tag=C9E96_RS12965;product=IbrB-like domain-containing protein;protein_id=WP_001164755.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	12052	13287	.	-	.	ID=gene-C9E96_RS12970;Name=C9E96_RS12970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12970;old_locus_tag=C9E96_13280
NZ_PYJX01000145.1	Protein Homology	CDS	12052	13287	.	-	0	ID=cds-WP_000118142.1;Parent=gene-C9E96_RS12970;Dbxref=GenBank:WP_000118142.1;Name=WP_000118142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459597.1;locus_tag=C9E96_RS12970;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_000118142.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	13452	14357	.	-	.	ID=gene-C9E96_RS12975;Name=citR;gbkey=Gene;gene=citR;gene_biotype=protein_coding;gene_synonym=ybdO;locus_tag=C9E96_RS12975;old_locus_tag=C9E96_13285
NZ_PYJX01000145.1	Protein Homology	CDS	13452	14357	.	-	0	ID=cds-WP_061378695.1;Parent=gene-C9E96_RS12975;Dbxref=GenBank:WP_061378695.1;Name=WP_061378695.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=citR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459598.1;locus_tag=C9E96_RS12975;product=DNA-binding transcriptional repressor CitR;protein_id=WP_061378695.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	14674	15420	.	-	.	ID=gene-C9E96_RS12980;Name=dsbG;gbkey=Gene;gene=dsbG;gene_biotype=protein_coding;locus_tag=C9E96_RS12980;old_locus_tag=C9E96_13295
NZ_PYJX01000145.1	Protein Homology	CDS	14674	15420	.	-	0	ID=cds-WP_000597128.1;Parent=gene-C9E96_RS12980;Dbxref=GenBank:WP_000597128.1;Name=WP_000597128.1;gbkey=CDS;gene=dsbG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459599.1;locus_tag=C9E96_RS12980;product=thiol:disulfide interchange protein DsbG;protein_id=WP_000597128.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	15861	16424	.	+	.	ID=gene-C9E96_RS12985;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=C9E96_RS12985;old_locus_tag=C9E96_13300
NZ_PYJX01000145.1	Protein Homology	CDS	15861	16424	.	+	0	ID=cds-WP_135494277.1;Parent=gene-C9E96_RS12985;Dbxref=GenBank:WP_135494277.1;Name=WP_135494277.1;Ontology_term=GO:0006979,GO:0102039;gbkey=CDS;gene=ahpC;go_function=NADH-dependent peroxiredoxin activity|0102039||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003858764.1;locus_tag=C9E96_RS12985;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_135494277.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	16666	18231	.	+	.	ID=gene-C9E96_RS12990;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=C9E96_RS12990;old_locus_tag=C9E96_13305
NZ_PYJX01000145.1	Protein Homology	CDS	16666	18231	.	+	0	ID=cds-WP_000887644.1;Parent=gene-C9E96_RS12990;Dbxref=GenBank:WP_000887644.1;Name=WP_000887644.1;Ontology_term=GO:0000302,GO:0008785,GO:0050660,GO:0051287;gbkey=CDS;gene=ahpF;go_function=alkyl hydroperoxide reductase activity|0008785||IEA,flavin adenine dinucleotide binding|0050660||IEA,NAD binding|0051287||IEA;go_process=response to reactive oxygen species|0000302||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459601.1;locus_tag=C9E96_RS12990;product=alkyl hydroperoxide reductase subunit F;protein_id=WP_000887644.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	18564	19124	.	+	.	ID=gene-C9E96_RS12995;Name=C9E96_RS12995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12995;old_locus_tag=C9E96_13310
NZ_PYJX01000145.1	Protein Homology	CDS	18564	19124	.	+	0	ID=cds-WP_023993224.1;Parent=gene-C9E96_RS12995;Dbxref=GenBank:WP_023993224.1;Name=WP_023993224.1;Ontology_term=GO:0061077;gbkey=CDS;go_process=chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459602.1;locus_tag=C9E96_RS12995;product=TorD/DmsD family molecular chaperone;protein_id=WP_023993224.1;transl_table=11
NZ_PYJX01000145.1	RefSeq	gene	19117	21161	.	+	.	ID=gene-C9E96_RS13000;Name=C9E96_RS13000;end_range=21161,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13000;old_locus_tag=C9E96_13315;partial=true
NZ_PYJX01000145.1	Protein Homology	CDS	19117	21161	.	+	0	ID=cds-WP_135494279.1;Parent=gene-C9E96_RS13000;Dbxref=GenBank:WP_135494279.1;Name=WP_135494279.1;Ontology_term=GO:0016491;end_range=21161,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459603.1;locus_tag=C9E96_RS13000;partial=true;product=molybdopterin-dependent oxidoreductase;protein_id=WP_135494279.1;transl_table=11
##sequence-region NZ_PYJX01000206.1 1 21033
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000206.1	RefSeq	region	1	21033	.	+	.	ID=NZ_PYJX01000206.1:1..21033;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000206.1	RefSeq	gene	55	726	.	+	.	ID=gene-C9E96_RS20520;Name=C9E96_RS20520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20520;old_locus_tag=C9E96_21040
NZ_PYJX01000206.1	Protein Homology	CDS	55	726	.	+	0	ID=cds-WP_135494545.1;Parent=gene-C9E96_RS20520;Dbxref=GenBank:WP_135494545.1;Name=WP_135494545.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462949.1;locus_tag=C9E96_RS20520;product=GntR family transcriptional regulator;protein_id=WP_135494545.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	pseudogene	824	949	.	+	.	ID=gene-C9E96_RS24080;Name=C9E96_RS24080;end_range=949,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24080;old_locus_tag=C9E96_21045;partial=true;pseudo=true
NZ_PYJX01000206.1	Protein Homology	CDS	824	949	.	+	0	ID=cds-C9E96_RS24080;Parent=gene-C9E96_RS24080;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=949,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229472.1;locus_tag=C9E96_RS24080;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000206.1	RefSeq	pseudogene	1001	1141	.	+	.	ID=gene-C9E96_RS24085;Name=C9E96_RS24085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24085;old_locus_tag=C9E96_21050;partial=true;pseudo=true;start_range=.,1001
NZ_PYJX01000206.1	Protein Homology	CDS	1001	1141	.	+	0	ID=cds-C9E96_RS24085;Parent=gene-C9E96_RS24085;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0008654,GO:0008715,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=CDP-diacylglycerol diphosphatase activity|0008715||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462945.1;locus_tag=C9E96_RS24085;partial=true;product=CDP-diacylglycerol diphosphatase;pseudo=true;start_range=.,1001;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	1231	1581	.	-	.	ID=gene-C9E96_RS20535;Name=C9E96_RS20535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20535;old_locus_tag=C9E96_21055
NZ_PYJX01000206.1	Protein Homology	CDS	1231	1581	.	-	0	ID=cds-WP_001173080.1;Parent=gene-C9E96_RS20535;Dbxref=GenBank:WP_001173080.1;Name=WP_001173080.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742380.1;locus_tag=C9E96_RS20535;product=cupin domain-containing protein;protein_id=WP_001173080.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	1595	3187	.	-	.	ID=gene-C9E96_RS20540;Name=lsrK;gbkey=Gene;gene=lsrK;gene_biotype=protein_coding;locus_tag=C9E96_RS20540;old_locus_tag=C9E96_21060
NZ_PYJX01000206.1	Protein Homology	CDS	1595	3187	.	-	0	ID=cds-WP_135494547.1;Parent=gene-C9E96_RS20540;Dbxref=GenBank:WP_135494547.1;Name=WP_135494547.1;Ontology_term=GO:0005975,GO:0009372,GO:0071518;gbkey=CDS;gene=lsrK;go_function=autoinducer-2 kinase activity|0071518||IEA;go_process=carbohydrate metabolic process|0005975||IEA,quorum sensing|0009372||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462953.1;locus_tag=C9E96_RS20540;product=autoinducer-2 kinase;protein_id=WP_135494547.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	3274	4233	.	-	.	ID=gene-C9E96_RS20545;Name=lsrR;gbkey=Gene;gene=lsrR;gene_biotype=protein_coding;locus_tag=C9E96_RS20545;old_locus_tag=C9E96_21065
NZ_PYJX01000206.1	Protein Homology	CDS	3274	4233	.	-	0	ID=cds-WP_001283049.1;Parent=gene-C9E96_RS20545;Dbxref=GenBank:WP_001283049.1;Name=WP_001283049.1;gbkey=CDS;gene=lsrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462954.1;locus_tag=C9E96_RS20545;product=transcriptional regulator LsrR;protein_id=WP_001283049.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	4489	6024	.	+	.	ID=gene-C9E96_RS20550;Name=lsrA;gbkey=Gene;gene=lsrA;gene_biotype=protein_coding;locus_tag=C9E96_RS20550;old_locus_tag=C9E96_21070
NZ_PYJX01000206.1	Protein Homology	CDS	4489	6024	.	+	0	ID=cds-WP_001167248.1;Parent=gene-C9E96_RS20550;Dbxref=GenBank:WP_001167248.1;Name=WP_001167248.1;Ontology_term=GO:1905887,GO:0005524,GO:0042626,GO:0016020;gbkey=CDS;gene=lsrA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=autoinducer AI-2 transmembrane transport|1905887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462955.1;locus_tag=C9E96_RS20550;product=autoinducer 2 ABC transporter ATP-binding protein LsrA;protein_id=WP_001167248.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	6018	7061	.	+	.	ID=gene-C9E96_RS20555;Name=lsrC;gbkey=Gene;gene=lsrC;gene_biotype=protein_coding;locus_tag=C9E96_RS20555;old_locus_tag=C9E96_21075
NZ_PYJX01000206.1	Protein Homology	CDS	6018	7061	.	+	0	ID=cds-WP_000911133.1;Parent=gene-C9E96_RS20555;Dbxref=GenBank:WP_000911133.1;Name=WP_000911133.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=lsrC;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462956.1;locus_tag=C9E96_RS20555;product=autoinducer 2 ABC transporter permease LsrC;protein_id=WP_000911133.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	7058	8059	.	+	.	ID=gene-C9E96_RS20560;Name=lsrD;gbkey=Gene;gene=lsrD;gene_biotype=protein_coding;locus_tag=C9E96_RS20560;old_locus_tag=C9E96_21080
NZ_PYJX01000206.1	Protein Homology	CDS	7058	8059	.	+	0	ID=cds-WP_072100810.1;Parent=gene-C9E96_RS20560;Dbxref=GenBank:WP_072100810.1;Name=WP_072100810.1;gbkey=CDS;gene=lsrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462957.1;locus_tag=C9E96_RS20560;product=autoinducer 2 ABC transporter permease LsrD;protein_id=WP_072100810.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	8088	9110	.	+	.	ID=gene-C9E96_RS20565;Name=lsrB;gbkey=Gene;gene=lsrB;gene_biotype=protein_coding;locus_tag=C9E96_RS20565;old_locus_tag=C9E96_21085
NZ_PYJX01000206.1	Protein Homology	CDS	8088	9110	.	+	0	ID=cds-WP_135494549.1;Parent=gene-C9E96_RS20565;Dbxref=GenBank:WP_135494549.1;Name=WP_135494549.1;gbkey=CDS;gene=lsrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462958.1;locus_tag=C9E96_RS20565;product=autoinducer 2 ABC transporter substrate-binding protein LsrB;protein_id=WP_135494549.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	9139	10014	.	+	.	ID=gene-C9E96_RS20570;Name=lsrF;gbkey=Gene;gene=lsrF;gene_biotype=protein_coding;locus_tag=C9E96_RS20570;old_locus_tag=C9E96_21090
NZ_PYJX01000206.1	Protein Homology	CDS	9139	10014	.	+	0	ID=cds-WP_000774146.1;Parent=gene-C9E96_RS20570;Dbxref=GenBank:WP_000774146.1;Name=WP_000774146.1;gbkey=CDS;gene=lsrF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000774144.1;locus_tag=C9E96_RS20570;product=3-hydroxy-5-phosphonooxypentane-2%2C4-dione thiolase LsrF;protein_id=WP_000774146.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	10097	10387	.	+	.	ID=gene-C9E96_RS20575;Name=lsrG;gbkey=Gene;gene=lsrG;gene_biotype=protein_coding;locus_tag=C9E96_RS20575;old_locus_tag=C9E96_21095
NZ_PYJX01000206.1	Protein Homology	CDS	10097	10387	.	+	0	ID=cds-WP_001543603.1;Parent=gene-C9E96_RS20575;Dbxref=GenBank:WP_001543603.1;Name=WP_001543603.1;gbkey=CDS;gene=lsrG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310152.1;locus_tag=C9E96_RS20575;product=(4S)-4-hydroxy-5-phosphonooxypentane-2%2C3-dione isomerase;protein_id=WP_001543603.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	10397	11161	.	+	.	ID=gene-C9E96_RS20580;Name=C9E96_RS20580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20580;old_locus_tag=C9E96_21100
NZ_PYJX01000206.1	Protein Homology	CDS	10397	11161	.	+	0	ID=cds-WP_023993654.1;Parent=gene-C9E96_RS20580;Dbxref=GenBank:WP_023993654.1;Name=WP_023993654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462961.1;locus_tag=C9E96_RS20580;product=epimerase;protein_id=WP_023993654.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	11253	12020	.	-	.	ID=gene-C9E96_RS20585;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=C9E96_RS20585;old_locus_tag=C9E96_21105
NZ_PYJX01000206.1	Protein Homology	CDS	11253	12020	.	-	0	ID=cds-WP_001216339.1;Parent=gene-C9E96_RS20585;Dbxref=GenBank:WP_001216339.1;Name=WP_001216339.1;Ontology_term=GO:0006096,GO:0004807;gbkey=CDS;gene=tpiA;go_function=triose-phosphate isomerase activity|0004807||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462962.1;locus_tag=C9E96_RS20585;product=triose-phosphate isomerase;protein_id=WP_001216339.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	12133	12729	.	-	.	ID=gene-C9E96_RS20590;Name=C9E96_RS20590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20590;old_locus_tag=C9E96_21110
NZ_PYJX01000206.1	Protein Homology	CDS	12133	12729	.	-	0	ID=cds-WP_000802241.1;Parent=gene-C9E96_RS20590;Dbxref=GenBank:WP_000802241.1;Name=WP_000802241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462963.1;locus_tag=C9E96_RS20590;product=YiiQ family protein;protein_id=WP_000802241.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	12830	13258	.	+	.	ID=gene-C9E96_RS20595;Name=C9E96_RS20595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20595;old_locus_tag=C9E96_21115
NZ_PYJX01000206.1	Protein Homology	CDS	12830	13258	.	+	0	ID=cds-WP_000155237.1;Parent=gene-C9E96_RS20595;Dbxref=GenBank:WP_000155237.1;Name=WP_000155237.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462964.1;locus_tag=C9E96_RS20595;product=DUF805 domain-containing protein;protein_id=WP_000155237.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	13365	14111	.	-	.	ID=gene-C9E96_RS20600;Name=fpr;gbkey=Gene;gene=fpr;gene_biotype=protein_coding;locus_tag=C9E96_RS20600;old_locus_tag=C9E96_21120
NZ_PYJX01000206.1	Protein Homology	CDS	13365	14111	.	-	0	ID=cds-WP_000796289.1;Parent=gene-C9E96_RS20600;Dbxref=GenBank:WP_000796289.1;Name=WP_000796289.1;Ontology_term=GO:0004324;gbkey=CDS;gene=fpr;go_function=ferredoxin-NADP+ reductase activity|0004324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462965.1;locus_tag=C9E96_RS20600;product=ferredoxin--NADP(+) reductase;protein_id=WP_000796289.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	14208	15218	.	-	.	ID=gene-C9E96_RS20605;Name=glpX;gbkey=Gene;gene=glpX;gene_biotype=protein_coding;locus_tag=C9E96_RS20605;old_locus_tag=C9E96_21125
NZ_PYJX01000206.1	Protein Homology	CDS	14208	15218	.	-	0	ID=cds-WP_001250624.1;Parent=gene-C9E96_RS20605;Dbxref=GenBank:WP_001250624.1;Name=WP_001250624.1;Ontology_term=GO:0006071,GO:0006094,GO:0042132;gbkey=CDS;gene=glpX;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=glycerol metabolic process|0006071||IEA,gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462966.1;locus_tag=C9E96_RS20605;product=class II fructose-bisphosphatase;protein_id=WP_001250624.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	15330	16838	.	-	.	ID=gene-C9E96_RS20610;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=C9E96_RS20610;old_locus_tag=C9E96_21130
NZ_PYJX01000206.1	Protein Homology	CDS	15330	16838	.	-	0	ID=cds-WP_000136808.1;Parent=gene-C9E96_RS20610;Dbxref=GenBank:WP_000136808.1;Name=WP_000136808.1;Ontology_term=GO:0006072,GO:0004370;gbkey=CDS;gene=glpK;go_function=glycerol kinase activity|0004370||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462967.1;locus_tag=C9E96_RS20610;product=glycerol kinase GlpK;protein_id=WP_000136808.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	16859	17704	.	-	.	ID=gene-C9E96_RS20615;Name=C9E96_RS20615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20615;old_locus_tag=C9E96_21135
NZ_PYJX01000206.1	Protein Homology	CDS	16859	17704	.	-	0	ID=cds-WP_000084285.1;Parent=gene-C9E96_RS20615;Dbxref=GenBank:WP_000084285.1;Name=WP_000084285.1;Ontology_term=GO:0055085,GO:0015267;gbkey=CDS;go_function=channel activity|0015267||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462968.1;locus_tag=C9E96_RS20615;product=MIP/aquaporin family protein;protein_id=WP_000084285.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	18103	18342	.	+	.	ID=gene-C9E96_RS20620;Name=zapB;gbkey=Gene;gene=zapB;gene_biotype=protein_coding;locus_tag=C9E96_RS20620;old_locus_tag=C9E96_21140
NZ_PYJX01000206.1	Protein Homology	CDS	18103	18342	.	+	0	ID=cds-WP_000051370.1;Parent=gene-C9E96_RS20620;Dbxref=GenBank:WP_000051370.1;Name=WP_000051370.1;gbkey=CDS;gene=zapB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229475.1;locus_tag=C9E96_RS20620;product=septal ring assembly protein ZapB;protein_id=WP_000051370.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	18564	19049	.	-	.	ID=gene-C9E96_RS20625;Name=rraA;gbkey=Gene;gene=rraA;gene_biotype=protein_coding;locus_tag=C9E96_RS20625;old_locus_tag=C9E96_21145
NZ_PYJX01000206.1	Protein Homology	CDS	18564	19049	.	-	0	ID=cds-WP_135494551.1;Parent=gene-C9E96_RS20625;Dbxref=GenBank:WP_135494551.1;Name=WP_135494551.1;Ontology_term=GO:0051252,GO:0008428;gbkey=CDS;gene=rraA;go_function=ribonuclease inhibitor activity|0008428||IEA;go_process=regulation of RNA metabolic process|0051252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001392924.1;locus_tag=C9E96_RS20625;product=ribonuclease E activity regulator RraA;protein_id=WP_135494551.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	19142	20071	.	-	.	ID=gene-C9E96_RS20630;Name=menA;gbkey=Gene;gene=menA;gene_biotype=protein_coding;locus_tag=C9E96_RS20630;old_locus_tag=C9E96_21150
NZ_PYJX01000206.1	Protein Homology	CDS	19142	20071	.	-	0	ID=cds-WP_000139639.1;Parent=gene-C9E96_RS20630;Dbxref=GenBank:WP_000139639.1;Name=WP_000139639.1;gbkey=CDS;gene=menA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462971.1;locus_tag=C9E96_RS20630;product=1%2C4-dihydroxy-2-naphthoate polyprenyltransferase;protein_id=WP_000139639.1;transl_table=11
NZ_PYJX01000206.1	RefSeq	gene	20138	21033	.	-	.	ID=gene-C9E96_RS20635;Name=hslU;end_range=21033,.;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=C9E96_RS20635;old_locus_tag=C9E96_21155;partial=true
NZ_PYJX01000206.1	Protein Homology	CDS	20138	21033	.	-	2	ID=cds-WP_135494553.1;Parent=gene-C9E96_RS20635;Dbxref=GenBank:WP_135494553.1;Name=WP_135494553.1;Ontology_term=GO:0006508,GO:0004176,GO:0005524,GO:0009376;end_range=21033,.;gbkey=CDS;gene=hslU;go_component=HslUV protease complex|0009376||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,ATP binding|0005524||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019841241.1;locus_tag=C9E96_RS20635;partial=true;product=HslU--HslV peptidase ATPase subunit;protein_id=WP_135494553.1;transl_table=11
##sequence-region NZ_PYJX01000210.1 1 20374
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000210.1	RefSeq	region	1	20374	.	+	.	ID=NZ_PYJX01000210.1:1..20374;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000210.1	RefSeq	gene	1	194	.	-	.	ID=gene-C9E96_RS20945;Name=C9E96_RS20945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20945;old_locus_tag=C9E96_21470;partial=true;start_range=.,1
NZ_PYJX01000210.1	Protein Homology	CDS	1	194	.	-	0	ID=cds-WP_135494561.1;Parent=gene-C9E96_RS20945;Dbxref=GenBank:WP_135494561.1;Name=WP_135494561.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461197.1;locus_tag=C9E96_RS20945;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_135494561.1;start_range=.,1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	200	1600	.	-	.	ID=gene-C9E96_RS20950;Name=C9E96_RS20950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20950;old_locus_tag=C9E96_21475
NZ_PYJX01000210.1	Protein Homology	CDS	200	1600	.	-	0	ID=cds-WP_000724469.1;Parent=gene-C9E96_RS20950;Dbxref=GenBank:WP_000724469.1;Name=WP_000724469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462720.1;locus_tag=C9E96_RS20950;product=cytochrome-c peroxidase;protein_id=WP_000724469.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	1790	2422	.	-	.	ID=gene-C9E96_RS20955;Name=torD;gbkey=Gene;gene=torD;gene_biotype=protein_coding;locus_tag=C9E96_RS20955;old_locus_tag=C9E96_21480
NZ_PYJX01000210.1	Protein Homology	CDS	1790	2422	.	-	0	ID=cds-WP_001041512.1;Parent=gene-C9E96_RS20955;Dbxref=GenBank:WP_001041512.1;Name=WP_001041512.1;Ontology_term=GO:0051259;gbkey=CDS;gene=torD;go_process=protein complex oligomerization|0051259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462721.1;locus_tag=C9E96_RS20955;product=molecular chaperone TorD;protein_id=WP_001041512.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	2415	4967	.	-	.	ID=gene-C9E96_RS20960;Name=torA;gbkey=Gene;gene=torA;gene_biotype=protein_coding;locus_tag=C9E96_RS20960;old_locus_tag=C9E96_21485
NZ_PYJX01000210.1	Protein Homology	CDS	2415	4967	.	-	0	ID=cds-WP_135494563.1;Parent=gene-C9E96_RS20960;Dbxref=GenBank:WP_135494563.1;Name=WP_135494563.1;Ontology_term=GO:0030151,GO:0043546,GO:0050626,GO:0042597;gbkey=CDS;gene=torA;go_component=periplasmic space|0042597||IEA;go_function=molybdenum ion binding|0030151||IEA,molybdopterin cofactor binding|0043546||IEA,trimethylamine-N-oxide reductase (cytochrome c) activity|0050626||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462722.1;locus_tag=C9E96_RS20960;product=trimethylamine-N-oxide reductase TorA;protein_id=WP_135494563.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	4957	6141	.	-	.	ID=gene-C9E96_RS20965;Name=torC;gbkey=Gene;gene=torC;gene_biotype=protein_coding;locus_tag=C9E96_RS20965;old_locus_tag=C9E96_21490
NZ_PYJX01000210.1	Protein Homology	CDS	4957	6141	.	-	0	ID=cds-WP_001230254.1;Parent=gene-C9E96_RS20965;Dbxref=GenBank:WP_001230254.1;Name=WP_001230254.1;Ontology_term=GO:0009055,GO:0020037,GO:0016020;gbkey=CDS;gene=torC;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462723.1;locus_tag=C9E96_RS20965;product=pentaheme c-type cytochrome TorC;protein_id=WP_001230254.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	6271	6963	.	+	.	ID=gene-C9E96_RS20970;Name=torR;gbkey=Gene;gene=torR;gene_biotype=protein_coding;locus_tag=C9E96_RS20970;old_locus_tag=C9E96_21495
NZ_PYJX01000210.1	Protein Homology	CDS	6271	6963	.	+	0	ID=cds-WP_001747553.1;Parent=gene-C9E96_RS20970;Dbxref=GenBank:WP_001747553.1;Name=WP_001747553.1;gbkey=CDS;gene=torR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462724.1;locus_tag=C9E96_RS20970;product=two-component system response regulator TorR;protein_id=WP_001747553.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	6936	7976	.	-	.	ID=gene-C9E96_RS20975;Name=torT;gbkey=Gene;gene=torT;gene_biotype=protein_coding;locus_tag=C9E96_RS20975;old_locus_tag=C9E96_21500
NZ_PYJX01000210.1	Protein Homology	CDS	6936	7976	.	-	0	ID=cds-WP_080203976.1;Parent=gene-C9E96_RS20975;Dbxref=GenBank:WP_080203976.1;Name=WP_080203976.1;gbkey=CDS;gene=torT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462725.1;locus_tag=C9E96_RS20975;product=TMAO reductase system periplasmic protein TorT;protein_id=WP_080203976.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	8056	10791	.	+	.	ID=gene-C9E96_RS20980;Name=torS;gbkey=Gene;gene=torS;gene_biotype=protein_coding;locus_tag=C9E96_RS20980;old_locus_tag=C9E96_21505
NZ_PYJX01000210.1	Protein Homology	CDS	8056	10791	.	+	0	ID=cds-WP_135494566.1;Parent=gene-C9E96_RS20980;Dbxref=GenBank:WP_135494566.1;Name=WP_135494566.1;gbkey=CDS;gene=torS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462726.1;locus_tag=C9E96_RS20980;product=TMAO reductase system sensor histidine kinase/response regulator TorS;protein_id=WP_135494566.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	10896	12023	.	-	.	ID=gene-C9E96_RS20985;Name=C9E96_RS20985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20985;old_locus_tag=C9E96_21510
NZ_PYJX01000210.1	Protein Homology	CDS	10896	12023	.	-	0	ID=cds-WP_023993774.1;Parent=gene-C9E96_RS20985;Dbxref=GenBank:WP_023993774.1;Name=WP_023993774.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006762570.1;locus_tag=C9E96_RS20985;product=DUF4056 domain-containing protein;protein_id=WP_023993774.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	12020	13159	.	-	.	ID=gene-C9E96_RS20990;Name=C9E96_RS20990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20990;old_locus_tag=C9E96_21515
NZ_PYJX01000210.1	Protein Homology	CDS	12020	13159	.	-	0	ID=cds-WP_135494569.1;Parent=gene-C9E96_RS20990;Dbxref=GenBank:WP_135494569.1;Name=WP_135494569.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528293.1;locus_tag=C9E96_RS20990;product=BamA/TamA family outer membrane protein;protein_id=WP_135494569.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	13156	14178	.	-	.	ID=gene-C9E96_RS20995;Name=C9E96_RS20995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS20995;old_locus_tag=C9E96_21520
NZ_PYJX01000210.1	Protein Homology	CDS	13156	14178	.	-	0	ID=cds-WP_000747398.1;Parent=gene-C9E96_RS20995;Dbxref=GenBank:WP_000747398.1;Name=WP_000747398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528257.1;locus_tag=C9E96_RS20995;product=hypothetical protein;protein_id=WP_000747398.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	14380	15192	.	-	.	ID=gene-C9E96_RS21000;Name=yidA;gbkey=Gene;gene=yidA;gene_biotype=protein_coding;locus_tag=C9E96_RS21000;old_locus_tag=C9E96_21525
NZ_PYJX01000210.1	Protein Homology	CDS	14380	15192	.	-	0	ID=cds-WP_000985571.1;Parent=gene-C9E96_RS21000;Dbxref=GenBank:WP_000985571.1;Name=WP_000985571.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yidA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418152.1;locus_tag=C9E96_RS21000;product=sugar-phosphatase;protein_id=WP_000985571.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	15497	16759	.	+	.	ID=gene-C9E96_RS21005;Name=C9E96_RS21005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21005;old_locus_tag=C9E96_21530
NZ_PYJX01000210.1	Protein Homology	CDS	15497	16759	.	+	0	ID=cds-WP_000061257.1;Parent=gene-C9E96_RS21005;Dbxref=GenBank:WP_000061257.1;Name=WP_000061257.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462732.1;locus_tag=C9E96_RS21005;product=MFS transporter;protein_id=WP_000061257.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	16773	17966	.	+	.	ID=gene-C9E96_RS21010;Name=C9E96_RS21010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21010;old_locus_tag=C9E96_21535
NZ_PYJX01000210.1	Protein Homology	CDS	16773	17966	.	+	0	ID=cds-WP_135494572.1;Parent=gene-C9E96_RS21010;Dbxref=GenBank:WP_135494572.1;Name=WP_135494572.1;Ontology_term=GO:0000287,GO:0003824;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462733.1;locus_tag=C9E96_RS21010;product=mandelate racemase/muconate lactonizing enzyme family protein;protein_id=WP_135494572.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	18081	18977	.	+	.	ID=gene-C9E96_RS21015;Name=C9E96_RS21015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21015;old_locus_tag=C9E96_21540
NZ_PYJX01000210.1	Protein Homology	CDS	18081	18977	.	+	0	ID=cds-WP_023993771.1;Parent=gene-C9E96_RS21015;Dbxref=GenBank:WP_023993771.1;Name=WP_023993771.1;Ontology_term=GO:0003677,GO:0003700,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462734.1;locus_tag=C9E96_RS21015;product=LysR family transcriptional regulator;protein_id=WP_023993771.1;transl_table=11
NZ_PYJX01000210.1	RefSeq	gene	18996	20374	.	-	.	ID=gene-C9E96_RS21020;Name=C9E96_RS21020;end_range=20374,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21020;old_locus_tag=C9E96_21545;partial=true
NZ_PYJX01000210.1	Protein Homology	CDS	18996	20374	.	-	2	ID=cds-WP_245306439.1;Parent=gene-C9E96_RS21020;Dbxref=GenBank:WP_245306439.1;Name=WP_245306439.1;end_range=20374,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121480.1;locus_tag=C9E96_RS21020;partial=true;product=toprim domain-containing protein;protein_id=WP_245306439.1;transl_table=11
##sequence-region NZ_PYJX01000197.1 1 20332
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000197.1	RefSeq	region	1	20332	.	+	.	ID=NZ_PYJX01000197.1:1..20332;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000197.1	RefSeq	gene	1	762	.	+	.	ID=gene-C9E96_RS19610;Name=purK;gbkey=Gene;gene=purK;gene_biotype=protein_coding;locus_tag=C9E96_RS19610;old_locus_tag=C9E96_20125;partial=true;start_range=.,1
NZ_PYJX01000197.1	Protein Homology	CDS	1	762	.	+	0	ID=cds-WP_135494513.1;Parent=gene-C9E96_RS19610;Dbxref=GenBank:WP_135494513.1;Name=WP_135494513.1;Ontology_term=GO:0006189,GO:0004638,GO:0005524,GO:0046872;gbkey=CDS;gene=purK;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459528.1;locus_tag=C9E96_RS19610;partial=true;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=WP_135494513.1;start_range=.,1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	858	1943	.	+	.	ID=gene-C9E96_RS19615;Name=mnmH;gbkey=Gene;gene=mnmH;gene_biotype=protein_coding;locus_tag=C9E96_RS19615;old_locus_tag=C9E96_20130
NZ_PYJX01000197.1	Protein Homology	CDS	858	1943	.	+	0	ID=cds-WP_135494515.1;Parent=gene-C9E96_RS19615;Dbxref=GenBank:WP_135494515.1;Name=WP_135494515.1;Ontology_term=GO:0002098,GO:0043828;gbkey=CDS;gene=mnmH;go_function=tRNA 2-selenouridine synthase activity|0043828||IEA;go_process=tRNA wobble uridine modification|0002098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000997743.1;locus_tag=C9E96_RS19615;product=tRNA 2-selenouridine(34) synthase MnmH;protein_id=WP_135494515.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	1972	2631	.	-	.	ID=gene-C9E96_RS19620;Name=C9E96_RS19620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19620;old_locus_tag=C9E96_20135
NZ_PYJX01000197.1	Protein Homology	CDS	1972	2631	.	-	0	ID=cds-WP_000342247.1;Parent=gene-C9E96_RS19620;Dbxref=GenBank:WP_000342247.1;Name=WP_000342247.1;Ontology_term=GO:0048473,GO:0033232,GO:0042626;gbkey=CDS;go_function=ABC-type D-methionine transporter activity|0033232||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459507.1;locus_tag=C9E96_RS19620;product=methionine ABC transporter permease;protein_id=WP_000342247.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	2624	3640	.	-	.	ID=gene-C9E96_RS19625;Name=sfbB;gbkey=Gene;gene=sfbB;gene_biotype=protein_coding;locus_tag=C9E96_RS19625;old_locus_tag=C9E96_20140
NZ_PYJX01000197.1	Protein Homology	CDS	2624	3640	.	-	0	ID=cds-WP_000569660.1;Parent=gene-C9E96_RS19625;Dbxref=GenBank:WP_000569660.1;Name=WP_000569660.1;gbkey=CDS;gene=sfbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459506.1;locus_tag=C9E96_RS19625;product=virulence-associated ABC transporter ATP-binding protein SfbB;protein_id=WP_000569660.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	3677	4507	.	-	.	ID=gene-C9E96_RS19630;Name=C9E96_RS19630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19630;old_locus_tag=C9E96_20145
NZ_PYJX01000197.1	Protein Homology	CDS	3677	4507	.	-	0	ID=cds-WP_079950537.1;Parent=gene-C9E96_RS19630;Dbxref=GenBank:WP_079950537.1;Name=WP_079950537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459505.1;locus_tag=C9E96_RS19630;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=WP_079950537.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	4764	5897	.	-	.	ID=gene-C9E96_RS19635;Name=C9E96_RS19635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19635;old_locus_tag=C9E96_20150
NZ_PYJX01000197.1	Protein Homology	CDS	4764	5897	.	-	0	ID=cds-WP_000152869.1;Parent=gene-C9E96_RS19635;Dbxref=GenBank:WP_000152869.1;Name=WP_000152869.1;Ontology_term=GO:0015288,GO:0009279,GO:0016020;gbkey=CDS;go_component=cell outer membrane|0009279||IEA,membrane|0016020||IEA;go_function=porin activity|0015288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459504.1;locus_tag=C9E96_RS19635;product=porin;protein_id=WP_000152869.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	6083	8497	.	-	.	ID=gene-C9E96_RS19640;Name=ybbP;gbkey=Gene;gene=ybbP;gene_biotype=protein_coding;locus_tag=C9E96_RS19640;old_locus_tag=C9E96_20155
NZ_PYJX01000197.1	Protein Homology	CDS	6083	8497	.	-	0	ID=cds-WP_135369843.1;Parent=gene-C9E96_RS19640;Dbxref=GenBank:WP_135369843.1;Name=WP_135369843.1;gbkey=CDS;gene=ybbP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459503.1;locus_tag=C9E96_RS19640;product=putative ABC transporter permease subunit YbbP;protein_id=WP_135369843.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	8494	9180	.	-	.	ID=gene-C9E96_RS19645;Name=ybbA;gbkey=Gene;gene=ybbA;gene_biotype=protein_coding;locus_tag=C9E96_RS19645;old_locus_tag=C9E96_20160
NZ_PYJX01000197.1	Protein Homology	CDS	8494	9180	.	-	0	ID=cds-WP_079902554.1;Parent=gene-C9E96_RS19645;Dbxref=GenBank:WP_079902554.1;Name=WP_079902554.1;gbkey=CDS;gene=ybbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459502.1;locus_tag=C9E96_RS19645;product=putative ABC transporter ATP-binding protein YbbA;protein_id=WP_079902554.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	9151	9765	.	+	.	ID=gene-C9E96_RS19650;Name=tesA;gbkey=Gene;gene=tesA;gene_biotype=protein_coding;locus_tag=C9E96_RS19650;old_locus_tag=C9E96_20165
NZ_PYJX01000197.1	Protein Homology	CDS	9151	9765	.	+	0	ID=cds-WP_001010574.1;Parent=gene-C9E96_RS19650;Dbxref=GenBank:WP_001010574.1;Name=WP_001010574.1;Ontology_term=GO:0006629,GO:0016298;gbkey=CDS;gene=tesA;go_function=lipase activity|0016298||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459501.1;locus_tag=C9E96_RS19650;product=multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1;protein_id=WP_001010574.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	9920	10690	.	+	.	ID=gene-C9E96_RS19655;Name=C9E96_RS19655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19655;old_locus_tag=C9E96_20170
NZ_PYJX01000197.1	Protein Homology	CDS	9920	10690	.	+	0	ID=cds-WP_058331291.1;Parent=gene-C9E96_RS19655;Dbxref=GenBank:WP_058331291.1;Name=WP_058331291.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459500.1;locus_tag=C9E96_RS19655;product=SDR family oxidoreductase;protein_id=WP_058331291.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	10750	11604	.	+	.	ID=gene-C9E96_RS19660;Name=cnoX;gbkey=Gene;gene=cnoX;gene_biotype=protein_coding;locus_tag=C9E96_RS19660;old_locus_tag=C9E96_20175
NZ_PYJX01000197.1	Protein Homology	CDS	10750	11604	.	+	0	ID=cds-WP_000116060.1;Parent=gene-C9E96_RS19660;Dbxref=GenBank:WP_000116060.1;Name=WP_000116060.1;gbkey=CDS;gene=cnoX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459499.1;locus_tag=C9E96_RS19660;product=chaperedoxin;protein_id=WP_000116060.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	11690	12469	.	-	.	ID=gene-C9E96_RS19665;Name=fetB;gbkey=Gene;gene=fetB;gene_biotype=protein_coding;locus_tag=C9E96_RS19665;old_locus_tag=C9E96_20180
NZ_PYJX01000197.1	Protein Homology	CDS	11690	12469	.	-	0	ID=cds-WP_001002130.1;Parent=gene-C9E96_RS19665;Dbxref=GenBank:WP_001002130.1;Name=WP_001002130.1;Ontology_term=GO:1903988,GO:0005886;gbkey=CDS;gene=fetB;go_component=plasma membrane|0005886||IEA;go_process=iron ion export across plasma membrane|1903988||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459498.1;locus_tag=C9E96_RS19665;product=iron efflux ABC transporter permease subunit FetB;protein_id=WP_001002130.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	12456	13133	.	-	.	ID=gene-C9E96_RS19670;Name=fetA;gbkey=Gene;gene=fetA;gene_biotype=protein_coding;gene_synonym=ybbL;locus_tag=C9E96_RS19670;old_locus_tag=C9E96_20185
NZ_PYJX01000197.1	Protein Homology	CDS	12456	13133	.	-	0	ID=cds-WP_080230328.1;Parent=gene-C9E96_RS19670;Dbxref=GenBank:WP_080230328.1;Name=WP_080230328.1;Ontology_term=GO:1903988,GO:0016887;gbkey=CDS;gene=fetA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=iron ion export across plasma membrane|1903988||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459497.1;locus_tag=C9E96_RS19670;product=iron efflux ABC transporter ATP-binding subunit FetA;protein_id=WP_080230328.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	13280	14197	.	+	.	ID=gene-C9E96_RS19675;Name=C9E96_RS19675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19675;old_locus_tag=C9E96_20190
NZ_PYJX01000197.1	Protein Homology	CDS	13280	14197	.	+	0	ID=cds-WP_135494517.1;Parent=gene-C9E96_RS19675;Dbxref=GenBank:WP_135494517.1;Name=WP_135494517.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459496.1;locus_tag=C9E96_RS19675;product=SPFH domain-containing protein;protein_id=WP_135494517.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	14194	14646	.	+	.	ID=gene-C9E96_RS19680;Name=C9E96_RS19680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19680;old_locus_tag=C9E96_20195
NZ_PYJX01000197.1	Protein Homology	CDS	14194	14646	.	+	0	ID=cds-WP_000561177.1;Parent=gene-C9E96_RS19680;Dbxref=GenBank:WP_000561177.1;Name=WP_000561177.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459495.1;locus_tag=C9E96_RS19680;product=NfeD family protein;protein_id=WP_000561177.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	14647	15063	.	-	.	ID=gene-C9E96_RS19685;Name=cueR;gbkey=Gene;gene=cueR;gene_biotype=protein_coding;locus_tag=C9E96_RS19685;old_locus_tag=C9E96_20200
NZ_PYJX01000197.1	Protein Homology	CDS	14647	15063	.	-	0	ID=cds-WP_001026760.1;Parent=gene-C9E96_RS19685;Dbxref=GenBank:WP_001026760.1;Name=WP_001026760.1;gbkey=CDS;gene=cueR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459494.1;locus_tag=C9E96_RS19685;product=Cu(I)-responsive transcriptional regulator;protein_id=WP_001026760.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	15173	17674	.	+	.	ID=gene-C9E96_RS19690;Name=copA;gbkey=Gene;gene=copA;gene_biotype=protein_coding;locus_tag=C9E96_RS19690;old_locus_tag=C9E96_20205
NZ_PYJX01000197.1	Protein Homology	CDS	15173	17674	.	+	0	ID=cds-WP_135494519.1;Parent=gene-C9E96_RS19690;Dbxref=GenBank:WP_135494519.1;Name=WP_135494519.1;Ontology_term=GO:0006812,GO:0019829;gbkey=CDS;gene=copA;go_function=ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA;go_process=monoatomic cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459493.1;locus_tag=C9E96_RS19690;product=copper-exporting P-type ATPase CopA;protein_id=WP_135494519.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	17828	18655	.	+	.	ID=gene-C9E96_RS19695;Name=C9E96_RS19695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19695;old_locus_tag=C9E96_20210
NZ_PYJX01000197.1	Protein Homology	CDS	17828	18655	.	+	0	ID=cds-WP_001523411.1;Parent=gene-C9E96_RS19695;Dbxref=GenBank:WP_001523411.1;Name=WP_001523411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459492.1;locus_tag=C9E96_RS19695;product=lysozyme inhibitor LprI family protein;protein_id=WP_001523411.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	18741	19535	.	+	.	ID=gene-C9E96_RS19700;Name=C9E96_RS19700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS19700;old_locus_tag=C9E96_20215
NZ_PYJX01000197.1	Protein Homology	CDS	18741	19535	.	+	0	ID=cds-WP_000421861.1;Parent=gene-C9E96_RS19700;Dbxref=GenBank:WP_000421861.1;Name=WP_000421861.1;Ontology_term=GO:0008233;gbkey=CDS;go_function=peptidase activity|0008233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459491.1;locus_tag=C9E96_RS19700;product=TraB/GumN family protein;protein_id=WP_000421861.1;transl_table=11
NZ_PYJX01000197.1	RefSeq	gene	19737	20216	.	+	.	ID=gene-C9E96_RS19705;Name=ybaK;gbkey=Gene;gene=ybaK;gene_biotype=protein_coding;locus_tag=C9E96_RS19705;old_locus_tag=C9E96_20220
NZ_PYJX01000197.1	Protein Homology	CDS	19737	20216	.	+	0	ID=cds-WP_000186618.1;Parent=gene-C9E96_RS19705;Dbxref=GenBank:WP_000186618.1;Name=WP_000186618.1;Ontology_term=GO:0002161;gbkey=CDS;gene=ybaK;go_function=aminoacyl-tRNA deacylase activity|0002161||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818871.1;locus_tag=C9E96_RS19705;product=Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK;protein_id=WP_000186618.1;transl_table=11
##sequence-region NZ_PYJX01000129.1 1 19891
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000129.1	RefSeq	region	1	19891	.	+	.	ID=NZ_PYJX01000129.1:1..19891;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000129.1	RefSeq	gene	724	1911	.	+	.	ID=gene-C9E96_RS10885;Name=C9E96_RS10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10885;old_locus_tag=C9E96_11135
NZ_PYJX01000129.1	Protein Homology	CDS	724	1911	.	+	0	ID=cds-WP_079986922.1;Parent=gene-C9E96_RS10885;Dbxref=GenBank:WP_079986922.1;Name=WP_079986922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001608974.1;locus_tag=C9E96_RS10885;product=MFS transporter;protein_id=WP_079986922.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	1880	2839	.	+	.	ID=gene-C9E96_RS10890;Name=yidZ;gbkey=Gene;gene=yidZ;gene_biotype=protein_coding;locus_tag=C9E96_RS10890;old_locus_tag=C9E96_11140
NZ_PYJX01000129.1	Protein Homology	CDS	1880	2839	.	+	0	ID=cds-WP_000749365.1;Parent=gene-C9E96_RS10890;Dbxref=GenBank:WP_000749365.1;Name=WP_000749365.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yidZ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462747.1;locus_tag=C9E96_RS10890;product=HTH-type transcriptional regulator YidZ;protein_id=WP_000749365.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	2997	3752	.	+	.	ID=gene-C9E96_RS10895;Name=C9E96_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10895;old_locus_tag=C9E96_11145
NZ_PYJX01000129.1	Protein Homology	CDS	2997	3752	.	+	0	ID=cds-WP_000190678.1;Parent=gene-C9E96_RS10895;Dbxref=GenBank:WP_000190678.1;Name=WP_000190678.1;Ontology_term=GO:0008897;gbkey=CDS;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462748.1;locus_tag=C9E96_RS10895;product=4'-phosphopantetheinyl transferase family protein;protein_id=WP_000190678.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	3752	4336	.	+	.	ID=gene-C9E96_RS10900;Name=C9E96_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10900;old_locus_tag=C9E96_11150
NZ_PYJX01000129.1	Protein Homology	CDS	3752	4336	.	+	0	ID=cds-WP_079986924.1;Parent=gene-C9E96_RS10900;Dbxref=GenBank:WP_079986924.1;Name=WP_079986924.1;Ontology_term=GO:0008752,GO:0008753,GO:0010181,GO:0016491,GO:0050136,GO:0052873;gbkey=CDS;go_function=FMN reductase [NAD(P)H] activity|0008752||IEA,NADPH dehydrogenase (quinone) activity|0008753||IEA,FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA,NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,FMN reductase (NADPH) activity|0052873||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462749.3;locus_tag=C9E96_RS10900;product=NADPH-dependent FMN reductase;protein_id=WP_079986924.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	4381	5718	.	-	.	ID=gene-C9E96_RS10905;Name=adeP;gbkey=Gene;gene=adeP;gene_biotype=protein_coding;locus_tag=C9E96_RS10905;old_locus_tag=C9E96_11155
NZ_PYJX01000129.1	Protein Homology	CDS	4381	5718	.	-	0	ID=cds-WP_001519317.1;Parent=gene-C9E96_RS10905;Dbxref=GenBank:WP_001519317.1;Name=WP_001519317.1;gbkey=CDS;gene=adeP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312678.1;locus_tag=C9E96_RS10905;product=adenine permease AdeP;protein_id=WP_001519317.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	5887	6552	.	+	.	ID=gene-C9E96_RS10910;Name=yieH;gbkey=Gene;gene=yieH;gene_biotype=protein_coding;locus_tag=C9E96_RS10910;old_locus_tag=C9E96_11160
NZ_PYJX01000129.1	Protein Homology	CDS	5887	6552	.	+	0	ID=cds-WP_080203978.1;Parent=gene-C9E96_RS10910;Dbxref=GenBank:WP_080203978.1;Name=WP_080203978.1;gbkey=CDS;gene=yieH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462751.1;locus_tag=C9E96_RS10910;product=6-phosphogluconate phosphatase;protein_id=WP_080203978.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	6647	7372	.	-	.	ID=gene-C9E96_RS10915;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=C9E96_RS10915;old_locus_tag=C9E96_11165
NZ_PYJX01000129.1	Protein Homology	CDS	6647	7372	.	-	0	ID=cds-WP_000377800.1;Parent=gene-C9E96_RS10915;Dbxref=GenBank:WP_000377800.1;Name=WP_000377800.1;Ontology_term=GO:0030643;gbkey=CDS;gene=phoU;go_process=intracellular phosphate ion homeostasis|0030643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462752.1;locus_tag=C9E96_RS10915;product=phosphate signaling complex protein PhoU;protein_id=WP_000377800.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	7387	8160	.	-	.	ID=gene-C9E96_RS10920;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=C9E96_RS10920;old_locus_tag=C9E96_11170
NZ_PYJX01000129.1	Protein Homology	CDS	7387	8160	.	-	0	ID=cds-WP_000063118.1;Parent=gene-C9E96_RS10920;Dbxref=GenBank:WP_000063118.1;Name=WP_000063118.1;Ontology_term=GO:0006817,GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000063125.1;locus_tag=C9E96_RS10920;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_000063118.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	8247	9137	.	-	.	ID=gene-C9E96_RS10925;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=C9E96_RS10925;old_locus_tag=C9E96_11175
NZ_PYJX01000129.1	Protein Homology	CDS	8247	9137	.	-	0	ID=cds-WP_000212197.1;Parent=gene-C9E96_RS10925;Dbxref=GenBank:WP_000212197.1;Name=WP_000212197.1;Ontology_term=GO:0035435,GO:0005886;gbkey=CDS;gene=pstA;go_component=plasma membrane|0005886||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462754.1;locus_tag=C9E96_RS10925;product=phosphate ABC transporter permease PstA;protein_id=WP_000212197.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	9137	10096	.	-	.	ID=gene-C9E96_RS10930;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=C9E96_RS10930;old_locus_tag=C9E96_11180
NZ_PYJX01000129.1	Protein Homology	CDS	9137	10096	.	-	0	ID=cds-WP_000741630.1;Parent=gene-C9E96_RS10930;Dbxref=GenBank:WP_000741630.1;Name=WP_000741630.1;Ontology_term=GO:0006817,GO:0055085,GO:0016020;gbkey=CDS;gene=pstC;go_component=membrane|0016020||IEA;go_process=phosphate ion transport|0006817||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008806729.1;locus_tag=C9E96_RS10930;product=phosphate ABC transporter permease PstC;protein_id=WP_000741630.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	10232	11272	.	-	.	ID=gene-C9E96_RS10935;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=C9E96_RS10935;old_locus_tag=C9E96_11185
NZ_PYJX01000129.1	Protein Homology	CDS	10232	11272	.	-	0	ID=cds-WP_135494192.1;Parent=gene-C9E96_RS10935;Dbxref=GenBank:WP_135494192.1;Name=WP_135494192.1;Ontology_term=GO:0035435,GO:0042301,GO:0043190;gbkey=CDS;gene=pstS;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=phosphate ion binding|0042301||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462756.1;locus_tag=C9E96_RS10935;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_135494192.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	11439	12812	.	-	.	ID=gene-C9E96_RS10940;Name=C9E96_RS10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10940;old_locus_tag=C9E96_11190
NZ_PYJX01000129.1	Protein Homology	CDS	11439	12812	.	-	0	ID=cds-WP_135494194.1;Parent=gene-C9E96_RS10940;Dbxref=GenBank:WP_135494194.1;Name=WP_135494194.1;Ontology_term=GO:0009401,GO:0022877,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462757.1;locus_tag=C9E96_RS10940;product=fructose-specific PTS transporter subunit EIIC;protein_id=WP_135494194.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	12861	13679	.	-	.	ID=gene-C9E96_RS10945;Name=C9E96_RS10945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10945;old_locus_tag=C9E96_11195
NZ_PYJX01000129.1	Protein Homology	CDS	12861	13679	.	-	0	ID=cds-WP_000166709.1;Parent=gene-C9E96_RS10945;Dbxref=GenBank:WP_000166709.1;Name=WP_000166709.1;Ontology_term=GO:0004764;gbkey=CDS;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462758.1;locus_tag=C9E96_RS10945;product=shikimate 5-dehydrogenase;protein_id=WP_000166709.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	13774	15531	.	+	.	ID=gene-C9E96_RS10950;Name=C9E96_RS10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10950;old_locus_tag=C9E96_11200
NZ_PYJX01000129.1	Protein Homology	CDS	13774	15531	.	+	0	ID=cds-WP_023214828.1;Parent=gene-C9E96_RS10950;Dbxref=GenBank:WP_023214828.1;Name=WP_023214828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462759.1;locus_tag=C9E96_RS10950;product=SgrR family transcriptional regulator;protein_id=WP_023214828.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	15682	17511	.	-	.	ID=gene-C9E96_RS10955;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=C9E96_RS10955;old_locus_tag=C9E96_11205
NZ_PYJX01000129.1	Protein Homology	CDS	15682	17511	.	-	0	ID=cds-WP_000334073.1;Parent=gene-C9E96_RS10955;Dbxref=GenBank:WP_000334073.1;Name=WP_000334073.1;Ontology_term=GO:1901137,GO:0004360;gbkey=CDS;gene=glmS;go_function=glutamine-fructose-6-phosphate transaminase (isomerizing) activity|0004360||IEA;go_process=carbohydrate derivative biosynthetic process|1901137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121462.1;locus_tag=C9E96_RS10955;product=glutamine--fructose-6-phosphate transaminase (isomerizing);protein_id=WP_000334073.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	17700	19070	.	-	.	ID=gene-C9E96_RS10960;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=C9E96_RS10960;old_locus_tag=C9E96_11210
NZ_PYJX01000129.1	Protein Homology	CDS	17700	19070	.	-	0	ID=cds-WP_135494196.1;Parent=gene-C9E96_RS10960;Dbxref=GenBank:WP_135494196.1;Name=WP_135494196.1;Ontology_term=GO:0000902,GO:0006048,GO:0009252,GO:0000287,GO:0003977,GO:0019134;gbkey=CDS;gene=glmU;go_function=magnesium ion binding|0000287||IEA,UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA,glucosamine-1-phosphate N-acetyltransferase activity|0019134||IEA;go_process=cell morphogenesis|0000902||IEA,UDP-N-acetylglucosamine biosynthetic process|0006048||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462761.1;locus_tag=C9E96_RS10960;product=bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;protein_id=WP_135494196.1;transl_table=11
NZ_PYJX01000129.1	RefSeq	gene	19390	19891	.	-	.	ID=gene-C9E96_RS10970;Name=C9E96_RS10970;end_range=19891,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10970;old_locus_tag=C9E96_11220;partial=true
NZ_PYJX01000129.1	Protein Homology	CDS	19390	19891	.	-	1	ID=cds-WP_135494198.1;Parent=gene-C9E96_RS10970;Dbxref=GenBank:WP_135494198.1;Name=WP_135494198.1;Ontology_term=GO:0016020;end_range=19891,.;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462762.1;locus_tag=C9E96_RS10970;partial=true;product=Bax inhibitor-1/YccA family protein;protein_id=WP_135494198.1;transl_table=11
##sequence-region NZ_PYJX01000153.1 1 19741
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000153.1	RefSeq	region	1	19741	.	+	.	ID=NZ_PYJX01000153.1:1..19741;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000153.1	RefSeq	gene	119	277	.	+	.	ID=gene-C9E96_RS24525;Name=C9E96_RS24525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24525
NZ_PYJX01000153.1	Protein Homology	CDS	119	277	.	+	0	ID=cds-WP_217805114.1;Parent=gene-C9E96_RS24525;Dbxref=GenBank:WP_217805114.1;Name=WP_217805114.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013677.6;locus_tag=C9E96_RS24525;product=transposase;protein_id=WP_217805114.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	pseudogene	211	781	.	+	.	ID=gene-C9E96_RS13500;Name=C9E96_RS13500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13500;old_locus_tag=C9E96_13830;partial=true;pseudo=true;start_range=.,211
NZ_PYJX01000153.1	Protein Homology	CDS	211	781	.	+	0	ID=cds-C9E96_RS13500;Parent=gene-C9E96_RS13500;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611501.1;locus_tag=C9E96_RS13500;partial=true;product=integrase core domain-containing protein;pseudo=true;start_range=.,211;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	1546	2043	.	+	.	ID=gene-C9E96_RS13505;Name=C9E96_RS13505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13505;old_locus_tag=C9E96_13835
NZ_PYJX01000153.1	Protein Homology	CDS	1546	2043	.	+	0	ID=cds-WP_080204118.1;Parent=gene-C9E96_RS13505;Dbxref=GenBank:WP_080204118.1;Name=WP_080204118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000789648.1;locus_tag=C9E96_RS13505;product=Saf-pilin pilus formation protein SafA;protein_id=WP_080204118.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	pseudogene	2142	2858	.	+	.	ID=gene-C9E96_RS13510;Name=safB;gbkey=Gene;gene=safB;gene_biotype=pseudogene;locus_tag=C9E96_RS13510;old_locus_tag=C9E96_13840;pseudo=true
NZ_PYJX01000153.1	Protein Homology	CDS	2142	2858	.	+	0	ID=cds-C9E96_RS13510;Parent=gene-C9E96_RS13510;Note=internal stop;gbkey=CDS;gene=safB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000257370.1;locus_tag=C9E96_RS13510;product=pili assembly chaperone SafB;pseudo=true;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	2882	5392	.	+	.	ID=gene-C9E96_RS13515;Name=C9E96_RS13515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13515;old_locus_tag=C9E96_13845
NZ_PYJX01000153.1	Protein Homology	CDS	2882	5392	.	+	0	ID=cds-WP_023993991.1;Parent=gene-C9E96_RS13515;Dbxref=GenBank:WP_023993991.1;Name=WP_023993991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459299.1;locus_tag=C9E96_RS13515;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_023993991.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	5414	5884	.	+	.	ID=gene-C9E96_RS13520;Name=afaD;gbkey=Gene;gene=afaD;gene_biotype=protein_coding;locus_tag=C9E96_RS13520;old_locus_tag=C9E96_13850
NZ_PYJX01000153.1	Protein Homology	CDS	5414	5884	.	+	0	ID=cds-WP_000266939.1;Parent=gene-C9E96_RS13520;Dbxref=GenBank:WP_000266939.1;Name=WP_000266939.1;gbkey=CDS;gene=afaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459300.1;locus_tag=C9E96_RS13520;product=AfaD family invasin;protein_id=WP_000266939.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	6292	7113	.	+	.	ID=gene-C9E96_RS13525;Name=C9E96_RS13525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13525;old_locus_tag=C9E96_13855
NZ_PYJX01000153.1	Protein Homology	CDS	6292	7113	.	+	0	ID=cds-WP_023994368.1;Parent=gene-C9E96_RS13525;Dbxref=GenBank:WP_023994368.1;Name=WP_023994368.1;Ontology_term=GO:0005975,GO:0016787,GO:0016810,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459301.1;locus_tag=C9E96_RS13525;product=polysaccharide deacetylase family protein;protein_id=WP_023994368.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	pseudogene	7196	7433	.	+	.	ID=gene-C9E96_RS13530;Name=C9E96_RS13530;end_range=7433,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13530;old_locus_tag=C9E96_13860;partial=true;pseudo=true
NZ_PYJX01000153.1	Protein Homology	CDS	7196	7433	.	+	0	ID=cds-C9E96_RS13530;Parent=gene-C9E96_RS13530;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=7433,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012602066.1;locus_tag=C9E96_RS13530;partial=true;product=PerC family transcriptional regulator;pseudo=true;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	7930	8877	.	+	.	ID=gene-C9E96_RS13535;Name=C9E96_RS13535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13535;old_locus_tag=C9E96_13865
NZ_PYJX01000153.1	Protein Homology	CDS	7930	8877	.	+	0	ID=cds-WP_023993811.1;Parent=gene-C9E96_RS13535;Dbxref=GenBank:WP_023993811.1;Name=WP_023993811.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459302.1;locus_tag=C9E96_RS13535;product=LysR family transcriptional regulator;protein_id=WP_023993811.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	pseudogene	8997	9116	.	+	.	ID=gene-C9E96_RS13540;Name=C9E96_RS13540;end_range=9116,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13540;old_locus_tag=C9E96_13870;partial=true;pseudo=true
NZ_PYJX01000153.1	Protein Homology	CDS	8997	9116	.	+	0	ID=cds-C9E96_RS13540;Parent=gene-C9E96_RS13540;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=9116,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459303.1;locus_tag=C9E96_RS13540;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000153.1	RefSeq	pseudogene	9197	9358	.	+	.	ID=gene-C9E96_RS13545;Name=C9E96_RS13545;end_range=9358,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13545;old_locus_tag=C9E96_13875;partial=true;pseudo=true
NZ_PYJX01000153.1	Protein Homology	CDS	9197	9358	.	+	0	ID=cds-C9E96_RS13545;Parent=gene-C9E96_RS13545;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=9358,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611456.1;locus_tag=C9E96_RS13545;partial=true;product=transposase;pseudo=true;transl_table=11
NZ_PYJX01000153.1	RefSeq	pseudogene	9423	10013	.	-	.	ID=gene-C9E96_RS13550;Name=C9E96_RS13550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13550;old_locus_tag=C9E96_13880;pseudo=true
NZ_PYJX01000153.1	Protein Homology	CDS	9423	10013	.	-	0	ID=cds-C9E96_RS13550;Parent=gene-C9E96_RS13550;Note=internal stop;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: protein motif:HMM:NF013828.6;locus_tag=C9E96_RS13550;product=ATP-binding protein;pseudo=true;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	11016	11726	.	+	.	ID=gene-C9E96_RS13560;Name=tcfA;gbkey=Gene;gene=tcfA;gene_biotype=protein_coding;locus_tag=C9E96_RS13560;old_locus_tag=C9E96_13890
NZ_PYJX01000153.1	Protein Homology	CDS	11016	11726	.	+	0	ID=cds-WP_001009508.1;Parent=gene-C9E96_RS13560;Dbxref=GenBank:WP_001009508.1;Name=WP_001009508.1;gbkey=CDS;gene=tcfA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001009503.1;locus_tag=C9E96_RS13560;product=fimbrial chaperone TcfA;protein_id=WP_001009508.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	11777	12352	.	+	.	ID=gene-C9E96_RS13565;Name=tcfB;gbkey=Gene;gene=tcfB;gene_biotype=protein_coding;locus_tag=C9E96_RS13565;old_locus_tag=C9E96_13895
NZ_PYJX01000153.1	Protein Homology	CDS	11777	12352	.	+	0	ID=cds-WP_000287810.1;Parent=gene-C9E96_RS13565;Dbxref=GenBank:WP_000287810.1;Name=WP_000287810.1;gbkey=CDS;gene=tcfB;inference=COORDINATES: protein motif:HMM:NF011837.0;locus_tag=C9E96_RS13565;product=fimbrial protein TcfB;protein_id=WP_000287810.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	12461	15148	.	+	.	ID=gene-C9E96_RS13570;Name=tcfC;gbkey=Gene;gene=tcfC;gene_biotype=protein_coding;locus_tag=C9E96_RS13570;old_locus_tag=C9E96_13900
NZ_PYJX01000153.1	Protein Homology	CDS	12461	15148	.	+	0	ID=cds-WP_080204117.1;Parent=gene-C9E96_RS13570;Dbxref=GenBank:WP_080204117.1;Name=WP_080204117.1;gbkey=CDS;gene=tcfC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000092509.1;locus_tag=C9E96_RS13570;product=fimbrial outer membrane usher protein TcfC;protein_id=WP_080204117.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	15171	16250	.	+	.	ID=gene-C9E96_RS13575;Name=tcfD;gbkey=Gene;gene=tcfD;gene_biotype=protein_coding;locus_tag=C9E96_RS13575;old_locus_tag=C9E96_13905
NZ_PYJX01000153.1	Protein Homology	CDS	15171	16250	.	+	0	ID=cds-WP_000066479.1;Parent=gene-C9E96_RS13575;Dbxref=GenBank:WP_000066479.1;Name=WP_000066479.1;gbkey=CDS;gene=tcfD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000066477.1;locus_tag=C9E96_RS13575;product=fimbrial protein TcfD;protein_id=WP_000066479.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	16383	16838	.	+	.	ID=gene-C9E96_RS13580;Name=tinR;gbkey=Gene;gene=tinR;gene_biotype=protein_coding;locus_tag=C9E96_RS13580;old_locus_tag=C9E96_13910
NZ_PYJX01000153.1	Protein Homology	CDS	16383	16838	.	+	0	ID=cds-WP_000141548.1;Parent=gene-C9E96_RS13580;Dbxref=GenBank:WP_000141548.1;Name=WP_000141548.1;gbkey=CDS;gene=tinR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000219490.1;locus_tag=C9E96_RS13580;product=Lrp/AsnC family transcriptional regulator TinR;protein_id=WP_000141548.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	16978	17595	.	+	.	ID=gene-C9E96_RS13585;Name=tioA;gbkey=Gene;gene=tioA;gene_biotype=protein_coding;locus_tag=C9E96_RS13585;old_locus_tag=C9E96_13915
NZ_PYJX01000153.1	Protein Homology	CDS	16978	17595	.	+	0	ID=cds-WP_000241747.1;Parent=gene-C9E96_RS13585;Dbxref=GenBank:WP_000241747.1;Name=WP_000241747.1;gbkey=CDS;gene=tioA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000241754.1;locus_tag=C9E96_RS13585;product=protein TioA;protein_id=WP_000241747.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	pseudogene	18197	18309	.	-	.	ID=gene-C9E96_RS24055;Name=C9E96_RS24055;end_range=18309,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24055;partial=true;pseudo=true;start_range=.,18197
NZ_PYJX01000153.1	Protein Homology	CDS	18197	18309	.	-	0	ID=cds-C9E96_RS24055;Parent=gene-C9E96_RS24055;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=18309,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415949.3;locus_tag=C9E96_RS24055;partial=true;product=hypothetical protein;pseudo=true;start_range=.,18197;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	18366	18554	.	+	.	ID=gene-C9E96_RS13595;Name=C9E96_RS13595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13595;old_locus_tag=C9E96_13925
NZ_PYJX01000153.1	Protein Homology	CDS	18366	18554	.	+	0	ID=cds-WP_031603649.1;Parent=gene-C9E96_RS13595;Dbxref=GenBank:WP_031603649.1;Name=WP_031603649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012543323.1;locus_tag=C9E96_RS13595;product=hypothetical protein;protein_id=WP_031603649.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	gene	18558	19277	.	-	.	ID=gene-C9E96_RS13600;Name=pagN;gbkey=Gene;gene=pagN;gene_biotype=protein_coding;locus_tag=C9E96_RS13600;old_locus_tag=C9E96_13930
NZ_PYJX01000153.1	Protein Homology	CDS	18558	19277	.	-	0	ID=cds-WP_000787601.1;Parent=gene-C9E96_RS13600;Dbxref=GenBank:WP_000787601.1;Name=WP_000787601.1;gbkey=CDS;gene=pagN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459304.1;locus_tag=C9E96_RS13600;product=adhesin/invasin protein PagN;protein_id=WP_000787601.1;transl_table=11
NZ_PYJX01000153.1	RefSeq	pseudogene	19608	19741	.	-	.	ID=gene-C9E96_RS24250;Name=C9E96_RS24250;end_range=19741,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24250;partial=true;pseudo=true
NZ_PYJX01000153.1	Protein Homology	CDS	19608	19741	.	-	2	ID=cds-C9E96_RS24250;Parent=gene-C9E96_RS24250;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=19741,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459305.1;locus_tag=C9E96_RS24250;partial=true;product=Spy/CpxP family protein refolding chaperone;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000122.1 1 19516
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000122.1	RefSeq	region	1	19516	.	+	.	ID=NZ_PYJX01000122.1:1..19516;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000122.1	RefSeq	gene	1	500	.	-	.	ID=gene-C9E96_RS10510;Name=C9E96_RS10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10510;old_locus_tag=C9E96_10740;partial=true;start_range=.,1
NZ_PYJX01000122.1	Protein Homology	CDS	1	500	.	-	0	ID=cds-WP_210114524.1;Parent=gene-C9E96_RS10510;Dbxref=GenBank:WP_210114524.1;Name=WP_210114524.1;Ontology_term=GO:0006812,GO:0055085,GO:1902600,GO:0015297,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA;go_process=monoatomic cation transport|0006812||IEA,transmembrane transport|0055085||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463134.1;locus_tag=C9E96_RS10510;partial=true;product=cation:proton antiporter;protein_id=WP_210114524.1;start_range=.,1;transl_table=11
NZ_PYJX01000122.1	RefSeq	gene	650	1999	.	-	.	ID=gene-C9E96_RS10520;Name=ghxP;gbkey=Gene;gene=ghxP;gene_biotype=protein_coding;gene_synonym=yjcD;locus_tag=C9E96_RS10520;old_locus_tag=C9E96_10750
NZ_PYJX01000122.1	Protein Homology	CDS	650	1999	.	-	0	ID=cds-WP_000106901.1;Parent=gene-C9E96_RS10520;Dbxref=GenBank:WP_000106901.1;Name=WP_000106901.1;gbkey=CDS;gene=ghxP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132609.1;locus_tag=C9E96_RS10520;product=guanine/hypoxanthine transporter GhxP;protein_id=WP_000106901.1;transl_table=11
NZ_PYJX01000122.1	RefSeq	gene	2347	3015	.	-	.	ID=gene-C9E96_RS10525;Name=C9E96_RS10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10525;old_locus_tag=C9E96_10760
NZ_PYJX01000122.1	Protein Homology	CDS	2347	3015	.	-	0	ID=cds-WP_000958575.1;Parent=gene-C9E96_RS10525;Dbxref=GenBank:WP_000958575.1;Name=WP_000958575.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463132.1;locus_tag=C9E96_RS10525;product=glutathione S-transferase family protein;protein_id=WP_000958575.1;transl_table=11
NZ_PYJX01000122.1	RefSeq	gene	3308	3766	.	-	.	ID=gene-C9E96_RS10530;Name=soxR;gbkey=Gene;gene=soxR;gene_biotype=protein_coding;locus_tag=C9E96_RS10530;old_locus_tag=C9E96_10765
NZ_PYJX01000122.1	Protein Homology	CDS	3308	3766	.	-	0	ID=cds-WP_000412686.1;Parent=gene-C9E96_RS10530;Dbxref=GenBank:WP_000412686.1;Name=WP_000412686.1;Ontology_term=GO:0006355,GO:0006979,GO:0003700,GO:0051537;gbkey=CDS;gene=soxR;go_function=DNA-binding transcription factor activity|0003700||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463131.1;locus_tag=C9E96_RS10530;product=redox-sensitive transcriptional activator SoxR;protein_id=WP_000412686.1;transl_table=11
NZ_PYJX01000122.1	RefSeq	gene	3853	4176	.	+	.	ID=gene-C9E96_RS10535;Name=soxS;gbkey=Gene;gene=soxS;gene_biotype=protein_coding;locus_tag=C9E96_RS10535;old_locus_tag=C9E96_10770
NZ_PYJX01000122.1	Protein Homology	CDS	3853	4176	.	+	0	ID=cds-WP_000019483.1;Parent=gene-C9E96_RS10535;Dbxref=GenBank:WP_000019483.1;Name=WP_000019483.1;gbkey=CDS;gene=soxS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463130.1;locus_tag=C9E96_RS10535;product=superoxide response transcriptional regulator SoxS;protein_id=WP_000019483.1;transl_table=11
NZ_PYJX01000122.1	RefSeq	gene	4164	5765	.	-	.	ID=gene-C9E96_RS10540;Name=C9E96_RS10540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10540;old_locus_tag=C9E96_10775
NZ_PYJX01000122.1	Protein Homology	CDS	4164	5765	.	-	0	ID=cds-WP_000083651.1;Parent=gene-C9E96_RS10540;Dbxref=GenBank:WP_000083651.1;Name=WP_000083651.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463129.1;locus_tag=C9E96_RS10540;product=EAL domain-containing protein;protein_id=WP_000083651.1;transl_table=11
NZ_PYJX01000122.1	RefSeq	gene	6327	6608	.	+	.	ID=gene-C9E96_RS10545;Name=C9E96_RS10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS10545;old_locus_tag=C9E96_10780
NZ_PYJX01000122.1	Protein Homology	CDS	6327	6608	.	+	0	ID=cds-WP_000719058.1;Parent=gene-C9E96_RS10545;Dbxref=GenBank:WP_000719058.1;Name=WP_000719058.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463128.1;locus_tag=C9E96_RS10545;product=YjcB family protein;protein_id=WP_000719058.1;transl_table=11
NZ_PYJX01000122.1	RefSeq	gene	6886	8952	.	-	.	ID=gene-C9E96_RS10550;Name=siiF;gbkey=Gene;gene=siiF;gene_biotype=protein_coding;locus_tag=C9E96_RS10550;old_locus_tag=C9E96_10785
NZ_PYJX01000122.1	Protein Homology	CDS	6886	8952	.	-	0	ID=cds-WP_000358577.1;Parent=gene-C9E96_RS10550;Dbxref=GenBank:WP_000358577.1;Name=WP_000358577.1;gbkey=CDS;gene=siiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463127.1;locus_tag=C9E96_RS10550;product=SPI-4 type I secretion system protein SiiF;protein_id=WP_000358577.1;transl_table=11
NZ_PYJX01000122.1	RefSeq	pseudogene	8992	19516	.	-	.	ID=gene-C9E96_RS10555;Name=siiE;end_range=19516,.;gbkey=Gene;gene=siiE;gene_biotype=pseudogene;locus_tag=C9E96_RS10555;old_locus_tag=C9E96_10790;partial=true;pseudo=true
NZ_PYJX01000122.1	Protein Homology	CDS	8992	19516	.	-	1	ID=cds-C9E96_RS10555;Parent=gene-C9E96_RS10555;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=19516,.;gbkey=CDS;gene=siiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463126.1;locus_tag=C9E96_RS10555;partial=true;product=non-fimbrial adhesin SiiE;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000013.1 1 19436
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000013.1	RefSeq	region	1	19436	.	+	.	ID=NZ_PYJX01000013.1:1..19436;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000013.1	RefSeq	gene	1	1896	.	+	.	ID=gene-C9E96_RS00865;Name=mscK;gbkey=Gene;gene=mscK;gene_biotype=protein_coding;locus_tag=C9E96_RS00865;old_locus_tag=C9E96_00880;partial=true;start_range=.,1
NZ_PYJX01000013.1	Protein Homology	CDS	1	1896	.	+	0	ID=cds-WP_135493727.1;Parent=gene-C9E96_RS00865;Dbxref=GenBank:WP_135493727.1;Name=WP_135493727.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscK;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459473.1;locus_tag=C9E96_RS00865;partial=true;product=mechanosensitive channel MscK;protein_id=WP_135493727.1;start_range=.,1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	1938	2873	.	-	.	ID=gene-C9E96_RS00870;Name=C9E96_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00870;old_locus_tag=C9E96_00885
NZ_PYJX01000013.1	Protein Homology	CDS	1938	2873	.	-	0	ID=cds-WP_000440507.1;Parent=gene-C9E96_RS00870;Dbxref=GenBank:WP_000440507.1;Name=WP_000440507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459474.1;locus_tag=C9E96_RS00870;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_000440507.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	2943	3110	.	-	.	ID=gene-C9E96_RS00875;Name=rsmS;gbkey=Gene;gene=rsmS;gene_biotype=protein_coding;locus_tag=C9E96_RS00875;old_locus_tag=C9E96_00890
NZ_PYJX01000013.1	Protein Homology	CDS	2943	3110	.	-	0	ID=cds-WP_000051161.1;Parent=gene-C9E96_RS00875;Dbxref=GenBank:WP_000051161.1;Name=WP_000051161.1;gbkey=CDS;gene=rsmS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459475.1;locus_tag=C9E96_RS00875;product=pleiotropic regulatory protein RsmS;protein_id=WP_000051161.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	3124	3651	.	-	.	ID=gene-C9E96_RS00880;Name=priC;gbkey=Gene;gene=priC;gene_biotype=protein_coding;locus_tag=C9E96_RS00880;old_locus_tag=C9E96_00895
NZ_PYJX01000013.1	Protein Homology	CDS	3124	3651	.	-	0	ID=cds-WP_001519637.1;Parent=gene-C9E96_RS00880;Dbxref=GenBank:WP_001519637.1;Name=WP_001519637.1;gbkey=CDS;gene=priC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001454692.1;locus_tag=C9E96_RS00880;product=primosomal replication protein N'';protein_id=WP_001519637.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	3720	4097	.	+	.	ID=gene-C9E96_RS00885;Name=C9E96_RS00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00885;old_locus_tag=C9E96_00900
NZ_PYJX01000013.1	Protein Homology	CDS	3720	4097	.	+	0	ID=cds-WP_001189860.1;Parent=gene-C9E96_RS00885;Dbxref=GenBank:WP_001189860.1;Name=WP_001189860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459477.1;locus_tag=C9E96_RS00885;product=DUF454 family protein;protein_id=WP_001189860.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	4250	4801	.	+	.	ID=gene-C9E96_RS00890;Name=apt;gbkey=Gene;gene=apt;gene_biotype=protein_coding;locus_tag=C9E96_RS00890;old_locus_tag=C9E96_00910
NZ_PYJX01000013.1	Protein Homology	CDS	4250	4801	.	+	0	ID=cds-WP_000127350.1;Parent=gene-C9E96_RS00890;Dbxref=GenBank:WP_000127350.1;Name=WP_000127350.1;Ontology_term=GO:0006168,GO:0003999;gbkey=CDS;gene=apt;go_function=adenine phosphoribosyltransferase activity|0003999||IEA;go_process=adenine salvage|0006168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125198.1;locus_tag=C9E96_RS00890;product=adenine phosphoribosyltransferase;protein_id=WP_000127350.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	4915	6843	.	+	.	ID=gene-C9E96_RS00895;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=C9E96_RS00895;old_locus_tag=C9E96_00915
NZ_PYJX01000013.1	Protein Homology	CDS	4915	6843	.	+	0	ID=cds-WP_000121967.1;Parent=gene-C9E96_RS00895;Dbxref=GenBank:WP_000121967.1;Name=WP_000121967.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459479.1;locus_tag=C9E96_RS00895;product=DNA polymerase III subunit gamma/tau;protein_id=WP_000121967.1;transl_table=11
NZ_PYJX01000013.1	cmsearch	sequence_feature	6176	6240	.	+	.	ID=id-C9E96_RS00895;Dbxref=RFAM:RF00382;Note=DnaX frameshifting element;gbkey=misc_feature;gene=dnaX;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS00895
NZ_PYJX01000013.1	RefSeq	gene	6889	7218	.	+	.	ID=gene-C9E96_RS00900;Name=C9E96_RS00900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00900;old_locus_tag=C9E96_00920
NZ_PYJX01000013.1	Protein Homology	CDS	6889	7218	.	+	0	ID=cds-WP_000467098.1;Parent=gene-C9E96_RS00900;Dbxref=GenBank:WP_000467098.1;Name=WP_000467098.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001364632.1;locus_tag=C9E96_RS00900;product=YbaB/EbfC family nucleoid-associated protein;protein_id=WP_000467098.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	7218	7823	.	+	.	ID=gene-C9E96_RS00905;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=C9E96_RS00905;old_locus_tag=C9E96_00925
NZ_PYJX01000013.1	Protein Homology	CDS	7218	7823	.	+	0	ID=cds-WP_001195023.1;Parent=gene-C9E96_RS00905;Dbxref=GenBank:WP_001195023.1;Name=WP_001195023.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0046872;gbkey=CDS;gene=recR;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459481.1;locus_tag=C9E96_RS00905;product=recombination mediator RecR;protein_id=WP_001195023.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	7934	9808	.	+	.	ID=gene-C9E96_RS00910;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=C9E96_RS00910;old_locus_tag=C9E96_00930
NZ_PYJX01000013.1	Protein Homology	CDS	7934	9808	.	+	0	ID=cds-WP_135493729.1;Parent=gene-C9E96_RS00910;Dbxref=GenBank:WP_135493729.1;Name=WP_135493729.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887,GO:0051082;gbkey=CDS;gene=htpG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003903109.1;locus_tag=C9E96_RS00910;product=molecular chaperone HtpG;protein_id=WP_135493729.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	10050	10694	.	+	.	ID=gene-C9E96_RS00915;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;locus_tag=C9E96_RS00915;old_locus_tag=C9E96_00940
NZ_PYJX01000013.1	Protein Homology	CDS	10050	10694	.	+	0	ID=cds-WP_135493731.1;Parent=gene-C9E96_RS00915;Dbxref=GenBank:WP_135493731.1;Name=WP_135493731.1;Ontology_term=GO:0006139,GO:0004017,GO:0005524;gbkey=CDS;gene=adk;go_function=adenylate kinase activity|0004017||IEA,ATP binding|0005524||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007706188.1;locus_tag=C9E96_RS00915;product=adenylate kinase;protein_id=WP_135493731.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	10923	11885	.	+	.	ID=gene-C9E96_RS00920;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=C9E96_RS00920;old_locus_tag=C9E96_00950
NZ_PYJX01000013.1	Protein Homology	CDS	10923	11885	.	+	0	ID=cds-WP_080204026.1;Parent=gene-C9E96_RS00920;Dbxref=GenBank:WP_080204026.1;Name=WP_080204026.1;Ontology_term=GO:0006779,GO:0004325;gbkey=CDS;gene=hemH;go_function=ferrochelatase activity|0004325||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459484.1;locus_tag=C9E96_RS00920;product=ferrochelatase;protein_id=WP_080204026.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	11882	12853	.	-	.	ID=gene-C9E96_RS00925;Name=aes;gbkey=Gene;gene=aes;gene_biotype=protein_coding;locus_tag=C9E96_RS00925;old_locus_tag=C9E96_00955
NZ_PYJX01000013.1	Protein Homology	CDS	11882	12853	.	-	0	ID=cds-WP_080204027.1;Parent=gene-C9E96_RS00925;Dbxref=GenBank:WP_080204027.1;Name=WP_080204027.1;Ontology_term=GO:0016787;gbkey=CDS;gene=aes;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459485.1;locus_tag=C9E96_RS00925;product=acetyl esterase;protein_id=WP_080204027.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	13006	14310	.	+	.	ID=gene-C9E96_RS00930;Name=gsk;gbkey=Gene;gene=gsk;gene_biotype=protein_coding;locus_tag=C9E96_RS00930;old_locus_tag=C9E96_00960
NZ_PYJX01000013.1	Protein Homology	CDS	13006	14310	.	+	0	ID=cds-WP_000671592.1;Parent=gene-C9E96_RS00930;Dbxref=GenBank:WP_000671592.1;Name=WP_000671592.1;gbkey=CDS;gene=gsk;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459486.1;locus_tag=C9E96_RS00930;product=inosine/guanosine kinase;protein_id=WP_000671592.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	14359	16035	.	-	.	ID=gene-C9E96_RS00935;Name=ybaL;gbkey=Gene;gene=ybaL;gene_biotype=protein_coding;locus_tag=C9E96_RS00935;old_locus_tag=C9E96_00965
NZ_PYJX01000013.1	Protein Homology	CDS	14359	16035	.	-	0	ID=cds-WP_000546202.1;Parent=gene-C9E96_RS00935;Dbxref=GenBank:WP_000546202.1;Name=WP_000546202.1;Ontology_term=GO:0006813,GO:0008324,GO:0051139,GO:0016020;gbkey=CDS;gene=ybaL;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA,metal cation:proton antiporter activity|0051139||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459487.1;locus_tag=C9E96_RS00935;product=YbaL family putative K(+) efflux transporter;protein_id=WP_000546202.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	16250	17470	.	-	.	ID=gene-C9E96_RS00940;Name=C9E96_RS00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS00940;old_locus_tag=C9E96_00970
NZ_PYJX01000013.1	Protein Homology	CDS	16250	17470	.	-	0	ID=cds-WP_080204028.1;Parent=gene-C9E96_RS00940;Dbxref=GenBank:WP_080204028.1;Name=WP_080204028.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459488.1;locus_tag=C9E96_RS00940;product=MFS transporter;protein_id=WP_080204028.1;transl_table=11
NZ_PYJX01000013.1	RefSeq	gene	17643	19295	.	+	.	ID=gene-C9E96_RS00945;Name=ushA;gbkey=Gene;gene=ushA;gene_biotype=protein_coding;locus_tag=C9E96_RS00945;old_locus_tag=C9E96_00975
NZ_PYJX01000013.1	Protein Homology	CDS	17643	19295	.	+	0	ID=cds-WP_023245534.1;Parent=gene-C9E96_RS00945;Dbxref=GenBank:WP_023245534.1;Name=WP_023245534.1;Ontology_term=GO:0009166,GO:0000166,GO:0016787,GO:0046872;gbkey=CDS;gene=ushA;go_function=nucleotide binding|0000166||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459489.1;locus_tag=C9E96_RS00945;product=bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA;protein_id=WP_023245534.1;transl_table=11
##sequence-region NZ_PYJX01000240.1 1 19274
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000240.1	RefSeq	region	1	19274	.	+	.	ID=NZ_PYJX01000240.1:1..19274;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000240.1	RefSeq	gene	155	1618	.	-	.	ID=gene-C9E96_RS22740;Name=citT;gbkey=Gene;gene=citT;gene_biotype=protein_coding;locus_tag=C9E96_RS22740;old_locus_tag=C9E96_23320
NZ_PYJX01000240.1	Protein Homology	CDS	155	1618	.	-	0	ID=cds-WP_135494711.1;Parent=gene-C9E96_RS22740;Dbxref=GenBank:WP_135494711.1;Name=WP_135494711.1;gbkey=CDS;gene=citT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459610.1;locus_tag=C9E96_RS22740;product=citrate/succinate antiporter CitT;protein_id=WP_135494711.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	1656	2552	.	-	.	ID=gene-C9E96_RS22745;Name=citG;gbkey=Gene;gene=citG;gene_biotype=protein_coding;locus_tag=C9E96_RS22745;old_locus_tag=C9E96_23325
NZ_PYJX01000240.1	Protein Homology	CDS	1656	2552	.	-	0	ID=cds-WP_000982655.1;Parent=gene-C9E96_RS22745;Dbxref=GenBank:WP_000982655.1;Name=WP_000982655.1;gbkey=CDS;gene=citG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459611.1;locus_tag=C9E96_RS22745;product=triphosphoribosyl-dephospho-CoA synthase CitG;protein_id=WP_000982655.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	2524	3075	.	-	.	ID=gene-C9E96_RS22750;Name=citX;gbkey=Gene;gene=citX;gene_biotype=protein_coding;locus_tag=C9E96_RS22750;old_locus_tag=C9E96_23330
NZ_PYJX01000240.1	Protein Homology	CDS	2524	3075	.	-	0	ID=cds-WP_001236072.1;Parent=gene-C9E96_RS22750;Dbxref=GenBank:WP_001236072.1;Name=WP_001236072.1;Ontology_term=GO:0051191,GO:0050519;gbkey=CDS;gene=citX;go_function=holo-citrate lyase synthase activity|0050519||IEA;go_process=prosthetic group biosynthetic process|0051191||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459612.1;locus_tag=C9E96_RS22750;product=citrate lyase holo-[acyl-carrier protein] synthase;protein_id=WP_001236072.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	3079	4608	.	-	.	ID=gene-C9E96_RS22755;Name=citF;gbkey=Gene;gene=citF;gene_biotype=protein_coding;locus_tag=C9E96_RS22755;old_locus_tag=C9E96_23335
NZ_PYJX01000240.1	Protein Homology	CDS	3079	4608	.	-	0	ID=cds-WP_023993219.1;Parent=gene-C9E96_RS22755;Dbxref=GenBank:WP_023993219.1;Name=WP_023993219.1;Ontology_term=GO:0006113,GO:0008814,GO:0008815,GO:0009346;gbkey=CDS;gene=citF;go_component=ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate CoA-transferase activity|0008814||IEA,citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459613.1;locus_tag=C9E96_RS22755;product=citrate lyase subunit alpha;protein_id=WP_023993219.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	4618	5526	.	-	.	ID=gene-C9E96_RS22760;Name=C9E96_RS22760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22760;old_locus_tag=C9E96_23340
NZ_PYJX01000240.1	Protein Homology	CDS	4618	5526	.	-	0	ID=cds-WP_135494713.1;Parent=gene-C9E96_RS22760;Dbxref=GenBank:WP_135494713.1;Name=WP_135494713.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459614.1;locus_tag=C9E96_RS22760;product=aldolase/citrate lyase family protein;protein_id=WP_135494713.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	5523	5819	.	-	.	ID=gene-C9E96_RS22765;Name=citD;gbkey=Gene;gene=citD;gene_biotype=protein_coding;locus_tag=C9E96_RS22765;old_locus_tag=C9E96_23345
NZ_PYJX01000240.1	Protein Homology	CDS	5523	5819	.	-	0	ID=cds-WP_000700679.1;Parent=gene-C9E96_RS22765;Dbxref=GenBank:WP_000700679.1;Name=WP_000700679.1;Ontology_term=GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citD;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459615.1;locus_tag=C9E96_RS22765;product=citrate lyase acyl carrier protein;protein_id=WP_000700679.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	5816	6892	.	-	.	ID=gene-C9E96_RS22770;Name=citC;gbkey=Gene;gene=citC;gene_biotype=protein_coding;locus_tag=C9E96_RS22770;old_locus_tag=C9E96_23350
NZ_PYJX01000240.1	Protein Homology	CDS	5816	6892	.	-	0	ID=cds-WP_000467872.1;Parent=gene-C9E96_RS22770;Dbxref=GenBank:WP_000467872.1;Name=WP_000467872.1;Ontology_term=GO:0006101,GO:0008771;gbkey=CDS;gene=citC;go_function=[citrate (pro-3S)-lyase] ligase activity|0008771||IEA;go_process=citrate metabolic process|0006101||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459616.1;locus_tag=C9E96_RS22770;product=[citrate (pro-3S)-lyase] ligase;protein_id=WP_000467872.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	7277	8938	.	+	.	ID=gene-C9E96_RS22775;Name=dpiB;gbkey=Gene;gene=dpiB;gene_biotype=protein_coding;locus_tag=C9E96_RS22775;old_locus_tag=C9E96_23355
NZ_PYJX01000240.1	Protein Homology	CDS	7277	8938	.	+	0	ID=cds-WP_039585772.1;Parent=gene-C9E96_RS22775;Dbxref=GenBank:WP_039585772.1;Name=WP_039585772.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=dpiB;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459617.1;locus_tag=C9E96_RS22775;product=sensor histidine kinase DpiB;protein_id=WP_039585772.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	8907	9587	.	+	.	ID=gene-C9E96_RS22780;Name=dpiA;gbkey=Gene;gene=dpiA;gene_biotype=protein_coding;gene_synonym=citB;locus_tag=C9E96_RS22780;old_locus_tag=C9E96_23360
NZ_PYJX01000240.1	Protein Homology	CDS	8907	9587	.	+	0	ID=cds-WP_000138778.1;Parent=gene-C9E96_RS22780;Dbxref=GenBank:WP_000138778.1;Name=WP_000138778.1;gbkey=CDS;gene=dpiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459618.1;locus_tag=C9E96_RS22780;product=two-component response regulator DpiA;protein_id=WP_000138778.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	9641	11026	.	-	.	ID=gene-C9E96_RS22785;Name=dcuC;gbkey=Gene;gene=dcuC;gene_biotype=protein_coding;locus_tag=C9E96_RS22785;old_locus_tag=C9E96_23365
NZ_PYJX01000240.1	Protein Homology	CDS	9641	11026	.	-	0	ID=cds-WP_000958619.1;Parent=gene-C9E96_RS22785;Dbxref=GenBank:WP_000958619.1;Name=WP_000958619.1;Ontology_term=GO:0015740,GO:0015556;gbkey=CDS;gene=dcuC;go_function=C4-dicarboxylate transmembrane transporter activity|0015556||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459619.1;locus_tag=C9E96_RS22785;product=anaerobic C4-dicarboxylate transporter DcuC;protein_id=WP_000958619.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	11403	11975	.	+	.	ID=gene-C9E96_RS22790;Name=pagP;gbkey=Gene;gene=pagP;gene_biotype=protein_coding;locus_tag=C9E96_RS22790;old_locus_tag=C9E96_23370
NZ_PYJX01000240.1	Protein Homology	CDS	11403	11975	.	+	0	ID=cds-WP_001623090.1;Parent=gene-C9E96_RS22790;Dbxref=GenBank:WP_001623090.1;Name=WP_001623090.1;gbkey=CDS;gene=pagP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459620.1;locus_tag=C9E96_RS22790;product=lipid IV(A) palmitoyltransferase PagP;protein_id=WP_001623090.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	12163	12372	.	+	.	ID=gene-C9E96_RS22795;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=C9E96_RS22795;old_locus_tag=C9E96_23375
NZ_PYJX01000240.1	Protein Homology	CDS	12163	12372	.	+	0	ID=cds-WP_000034826.1;Parent=gene-C9E96_RS22795;Dbxref=GenBank:WP_000034826.1;Name=WP_000034826.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459621.1;locus_tag=C9E96_RS22795;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_000034826.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	12430	12813	.	-	.	ID=gene-C9E96_RS22800;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=C9E96_RS22800;old_locus_tag=C9E96_23380
NZ_PYJX01000240.1	Protein Homology	CDS	12430	12813	.	-	0	ID=cds-WP_000939753.1;Parent=gene-C9E96_RS22800;Dbxref=GenBank:WP_000939753.1;Name=WP_000939753.1;Ontology_term=GO:0016020;gbkey=CDS;gene=crcB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459622.1;locus_tag=C9E96_RS22800;product=fluoride efflux transporter CrcB;protein_id=WP_000939753.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	12904	13692	.	+	.	ID=gene-C9E96_RS22805;Name=C9E96_RS22805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22805;old_locus_tag=C9E96_23385
NZ_PYJX01000240.1	Protein Homology	CDS	12904	13692	.	+	0	ID=cds-WP_023993216.1;Parent=gene-C9E96_RS22805;Dbxref=GenBank:WP_023993216.1;Name=WP_023993216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459623.1;locus_tag=C9E96_RS22805;product=deaminated glutathione amidase;protein_id=WP_023993216.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	13821	14024	.	+	.	ID=gene-C9E96_RS22810;Name=tatE;gbkey=Gene;gene=tatE;gene_biotype=protein_coding;locus_tag=C9E96_RS22810;old_locus_tag=C9E96_23390
NZ_PYJX01000240.1	Protein Homology	CDS	13821	14024	.	+	0	ID=cds-WP_000503938.1;Parent=gene-C9E96_RS22810;Dbxref=GenBank:WP_000503938.1;Name=WP_000503938.1;gbkey=CDS;gene=tatE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459624.1;locus_tag=C9E96_RS22810;product=twin-arginine translocase subunit TatE;protein_id=WP_000503938.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	14110	15075	.	-	.	ID=gene-C9E96_RS22815;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=C9E96_RS22815;old_locus_tag=C9E96_23395
NZ_PYJX01000240.1	Protein Homology	CDS	14110	15075	.	-	0	ID=cds-WP_000042640.1;Parent=gene-C9E96_RS22815;Dbxref=GenBank:WP_000042640.1;Name=WP_000042640.1;Ontology_term=GO:0009107,GO:0016992,GO:0051539,GO:1904047;gbkey=CDS;gene=lipA;go_function=lipoate synthase activity|0016992||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=lipoate biosynthetic process|0009107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904980.1;locus_tag=C9E96_RS22815;product=lipoyl synthase;protein_id=WP_000042640.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	15281	16234	.	-	.	ID=gene-C9E96_RS22820;Name=C9E96_RS22820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22820;old_locus_tag=C9E96_23400
NZ_PYJX01000240.1	Protein Homology	CDS	15281	16234	.	-	0	ID=cds-WP_023993215.1;Parent=gene-C9E96_RS22820;Dbxref=GenBank:WP_023993215.1;Name=WP_023993215.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459626.1;locus_tag=C9E96_RS22820;product=YbeF family transcriptional regulator;protein_id=WP_023993215.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	16536	17177	.	-	.	ID=gene-C9E96_RS22825;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=C9E96_RS22825;old_locus_tag=C9E96_23405
NZ_PYJX01000240.1	Protein Homology	CDS	16536	17177	.	-	0	ID=cds-WP_000284009.1;Parent=gene-C9E96_RS22825;Dbxref=GenBank:WP_000284009.1;Name=WP_000284009.1;Ontology_term=GO:0009249,GO:0033819;gbkey=CDS;gene=lipB;go_function=lipoyl(octanoyl) transferase activity|0033819||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415163.2;locus_tag=C9E96_RS22825;product=lipoyl(octanoyl) transferase LipB;protein_id=WP_000284009.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	17277	17540	.	-	.	ID=gene-C9E96_RS22830;Name=ybeD;gbkey=Gene;gene=ybeD;gene_biotype=protein_coding;locus_tag=C9E96_RS22830;old_locus_tag=C9E96_23410
NZ_PYJX01000240.1	Protein Homology	CDS	17277	17540	.	-	0	ID=cds-WP_000850547.1;Parent=gene-C9E96_RS22830;Dbxref=GenBank:WP_000850547.1;Name=WP_000850547.1;gbkey=CDS;gene=ybeD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459628.1;locus_tag=C9E96_RS22830;product=DUF493 family protein YbeD;protein_id=WP_000850547.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	17648	18859	.	-	.	ID=gene-C9E96_RS22835;Name=dacA;gbkey=Gene;gene=dacA;gene_biotype=protein_coding;locus_tag=C9E96_RS22835;old_locus_tag=C9E96_23415
NZ_PYJX01000240.1	Protein Homology	CDS	17648	18859	.	-	0	ID=cds-WP_000858711.1;Parent=gene-C9E96_RS22835;Dbxref=GenBank:WP_000858711.1;Name=WP_000858711.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=dacA;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459629.1;locus_tag=C9E96_RS22835;product=D-alanyl-D-alanine carboxypeptidase DacA;protein_id=WP_000858711.1;transl_table=11
NZ_PYJX01000240.1	RefSeq	gene	18999	19274	.	-	.	ID=gene-C9E96_RS22840;Name=C9E96_RS22840;end_range=19274,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS22840;old_locus_tag=C9E96_23420;partial=true
NZ_PYJX01000240.1	Protein Homology	CDS	18999	19274	.	-	0	ID=cds-WP_210114535.1;Parent=gene-C9E96_RS22840;Dbxref=GenBank:WP_210114535.1;Name=WP_210114535.1;Ontology_term=GO:0042834;end_range=19274,.;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459630.1;locus_tag=C9E96_RS22840;partial=true;product=SPOR domain-containing protein;protein_id=WP_210114535.1;transl_table=11
##sequence-region NZ_PYJX01000137.1 1 72699
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000137.1	RefSeq	region	1	72699	.	+	.	ID=NZ_PYJX01000137.1:1..72699;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000137.1	RefSeq	gene	330	842	.	-	.	ID=gene-C9E96_RS11400;Name=C9E96_RS11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11400;old_locus_tag=C9E96_11680
NZ_PYJX01000137.1	Protein Homology	CDS	330	842	.	-	0	ID=cds-WP_001195556.1;Parent=gene-C9E96_RS11400;Dbxref=GenBank:WP_001195556.1;Name=WP_001195556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460071.1;locus_tag=C9E96_RS11400;product=4-hydroxyphenylacetate 3-monooxygenase reductase subunit;protein_id=WP_001195556.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	860	2422	.	-	.	ID=gene-C9E96_RS11405;Name=hpaB;gbkey=Gene;gene=hpaB;gene_biotype=protein_coding;locus_tag=C9E96_RS11405;old_locus_tag=C9E96_11685
NZ_PYJX01000137.1	Protein Homology	CDS	860	2422	.	-	0	ID=cds-WP_000801496.1;Parent=gene-C9E96_RS11405;Dbxref=GenBank:WP_000801496.1;Name=WP_000801496.1;Ontology_term=GO:0010124,GO:0016712,GO:0050660;gbkey=CDS;gene=hpaB;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C reduced flavin or flavoprotein as one donor%2C and incorporation of one atom of oxygen|0016712||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000801462.1;locus_tag=C9E96_RS11405;product=4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component;protein_id=WP_000801496.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	2640	3080	.	-	.	ID=gene-C9E96_RS11410;Name=hpaR;gbkey=Gene;gene=hpaR;gene_biotype=protein_coding;locus_tag=C9E96_RS11410;old_locus_tag=C9E96_11690
NZ_PYJX01000137.1	Protein Homology	CDS	2640	3080	.	-	0	ID=cds-WP_135494219.1;Parent=gene-C9E96_RS11410;Dbxref=GenBank:WP_135494219.1;Name=WP_135494219.1;Ontology_term=GO:0045892,GO:0003677,GO:0003700;gbkey=CDS;gene=hpaR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460073.1;locus_tag=C9E96_RS11410;product=homoprotocatechuate degradation operon regulator HpaR;protein_id=WP_135494219.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	3355	4644	.	+	.	ID=gene-C9E96_RS11415;Name=hpaG;gbkey=Gene;gene=hpaG;gene_biotype=protein_coding;locus_tag=C9E96_RS11415;old_locus_tag=C9E96_11695
NZ_PYJX01000137.1	Protein Homology	CDS	3355	4644	.	+	0	ID=cds-WP_000679210.1;Parent=gene-C9E96_RS11415;Dbxref=GenBank:WP_000679210.1;Name=WP_000679210.1;Ontology_term=GO:1901023,GO:0008704,GO:0018800;gbkey=CDS;gene=hpaG;go_function=5-carboxymethyl-2-hydroxymuconate delta-isomerase activity|0008704||IEA,5-oxopent-3-ene-1%2C2%2C5-tricarboxylate decarboxylase activity|0018800||IEA;go_process=4-hydroxyphenylacetate catabolic process|1901023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460074.1;locus_tag=C9E96_RS11415;product=4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase;protein_id=WP_000679210.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	4641	6107	.	+	.	ID=gene-C9E96_RS11420;Name=hpaE;gbkey=Gene;gene=hpaE;gene_biotype=protein_coding;locus_tag=C9E96_RS11420;old_locus_tag=C9E96_11700
NZ_PYJX01000137.1	Protein Homology	CDS	4641	6107	.	+	0	ID=cds-WP_000723529.1;Parent=gene-C9E96_RS11420;Dbxref=GenBank:WP_000723529.1;Name=WP_000723529.1;Ontology_term=GO:1901023,GO:0018480;gbkey=CDS;gene=hpaE;go_function=5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity|0018480||IEA;go_process=4-hydroxyphenylacetate catabolic process|1901023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460075.1;locus_tag=C9E96_RS11420;product=5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase;protein_id=WP_000723529.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	6109	6960	.	+	.	ID=gene-C9E96_RS11425;Name=hpaD;gbkey=Gene;gene=hpaD;gene_biotype=protein_coding;locus_tag=C9E96_RS11425;old_locus_tag=C9E96_11705
NZ_PYJX01000137.1	Protein Homology	CDS	6109	6960	.	+	0	ID=cds-WP_000516978.1;Parent=gene-C9E96_RS11425;Dbxref=GenBank:WP_000516978.1;Name=WP_000516978.1;Ontology_term=GO:0008152,GO:0008198,GO:0008687;gbkey=CDS;gene=hpaD;go_function=ferrous iron binding|0008198||IEA,3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase activity|0008687||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460076.1;locus_tag=C9E96_RS11425;product=3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase;protein_id=WP_000516978.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	6971	7351	.	+	.	ID=gene-C9E96_RS11430;Name=C9E96_RS11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11430;old_locus_tag=C9E96_11710
NZ_PYJX01000137.1	Protein Homology	CDS	6971	7351	.	+	0	ID=cds-WP_001119849.1;Parent=gene-C9E96_RS11430;Dbxref=GenBank:WP_001119849.1;Name=WP_001119849.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460077.1;locus_tag=C9E96_RS11430;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase;protein_id=WP_001119849.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	7495	8298	.	+	.	ID=gene-C9E96_RS11440;Name=hpaH;gbkey=Gene;gene=hpaH;gene_biotype=protein_coding;locus_tag=C9E96_RS11440;old_locus_tag=C9E96_11720
NZ_PYJX01000137.1	Protein Homology	CDS	7495	8298	.	+	0	ID=cds-WP_000884795.1;Parent=gene-C9E96_RS11440;Dbxref=GenBank:WP_000884795.1;Name=WP_000884795.1;Ontology_term=GO:0009056,GO:0018817;gbkey=CDS;gene=hpaH;go_function=2-oxo-hept-3-ene-1%2C7-dioate hydratase activity|0018817||IEA;go_process=catabolic process|0009056||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460078.1;locus_tag=C9E96_RS11440;product=2-oxo-hept-4-ene-1%2C7-dioate hydratase;protein_id=WP_000884795.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	8309	9100	.	+	.	ID=gene-C9E96_RS11445;Name=hpaI;gbkey=Gene;gene=hpaI;gene_biotype=protein_coding;locus_tag=C9E96_RS11445;old_locus_tag=C9E96_11725
NZ_PYJX01000137.1	Protein Homology	CDS	8309	9100	.	+	0	ID=cds-WP_080203873.1;Parent=gene-C9E96_RS11445;Dbxref=GenBank:WP_080203873.1;Name=WP_080203873.1;Ontology_term=GO:0010124;gbkey=CDS;gene=hpaI;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460079.1;locus_tag=C9E96_RS11445;product=4-hydroxy-2-oxoheptanedioate aldolase;protein_id=WP_080203873.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	9172	10548	.	+	.	ID=gene-C9E96_RS11450;Name=hpaX;gbkey=Gene;gene=hpaX;gene_biotype=protein_coding;locus_tag=C9E96_RS11450;old_locus_tag=C9E96_11730
NZ_PYJX01000137.1	Protein Homology	CDS	9172	10548	.	+	0	ID=cds-WP_001285803.1;Parent=gene-C9E96_RS11450;Dbxref=GenBank:WP_001285803.1;Name=WP_001285803.1;Ontology_term=GO:1900754,GO:1901241;gbkey=CDS;gene=hpaX;go_function=4-hydroxyphenylacetate transmembrane transporter activity|1901241||IEA;go_process=4-hydroxyphenylacetate transport|1900754||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460080.1;locus_tag=C9E96_RS11450;product=4-hydroxyphenylacetate permease;protein_id=WP_001285803.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	10558	11454	.	+	.	ID=gene-C9E96_RS11455;Name=hpaA;gbkey=Gene;gene=hpaA;gene_biotype=protein_coding;locus_tag=C9E96_RS11455;old_locus_tag=C9E96_11735
NZ_PYJX01000137.1	Protein Homology	CDS	10558	11454	.	+	0	ID=cds-WP_000336602.1;Parent=gene-C9E96_RS11455;Dbxref=GenBank:WP_000336602.1;Name=WP_000336602.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=hpaA;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460081.1;locus_tag=C9E96_RS11455;product=4-hydroxyphenylacetate catabolism regulatory protein HpaA;protein_id=WP_000336602.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	11468	12406	.	+	.	ID=gene-C9E96_RS11460;Name=C9E96_RS11460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11460;old_locus_tag=C9E96_11740
NZ_PYJX01000137.1	Protein Homology	CDS	11468	12406	.	+	0	ID=cds-WP_000976561.1;Parent=gene-C9E96_RS11460;Dbxref=GenBank:WP_000976561.1;Name=WP_000976561.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460082.1;locus_tag=C9E96_RS11460;product=MBL fold metallo-hydrolase;protein_id=WP_000976561.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	12814	13176	.	-	.	ID=gene-C9E96_RS11465;Name=C9E96_RS11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11465;old_locus_tag=C9E96_11745
NZ_PYJX01000137.1	Protein Homology	CDS	12814	13176	.	-	0	ID=cds-WP_001537781.1;Parent=gene-C9E96_RS11465;Dbxref=GenBank:WP_001537781.1;Name=WP_001537781.1;Ontology_term=GO:0043856,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=anti-sigma factor antagonist activity|0043856||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460083.1;locus_tag=C9E96_RS11465;product=anti-adapter protein IraM;protein_id=WP_001537781.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	13830	14135	.	-	.	ID=gene-C9E96_RS11475;Name=cbpM;gbkey=Gene;gene=cbpM;gene_biotype=protein_coding;locus_tag=C9E96_RS11475;old_locus_tag=C9E96_11755
NZ_PYJX01000137.1	Protein Homology	CDS	13830	14135	.	-	0	ID=cds-WP_001284251.1;Parent=gene-C9E96_RS11475;Dbxref=GenBank:WP_001284251.1;Name=WP_001284251.1;gbkey=CDS;gene=cbpM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460084.1;locus_tag=C9E96_RS11475;product=chaperone modulator CbpM;protein_id=WP_001284251.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	14135	15055	.	-	.	ID=gene-C9E96_RS11480;Name=cbpA;gbkey=Gene;gene=cbpA;gene_biotype=protein_coding;locus_tag=C9E96_RS11480;old_locus_tag=C9E96_11760
NZ_PYJX01000137.1	Protein Homology	CDS	14135	15055	.	-	0	ID=cds-WP_080203874.1;Parent=gene-C9E96_RS11480;Dbxref=GenBank:WP_080203874.1;Name=WP_080203874.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=cbpA;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460085.1;locus_tag=C9E96_RS11480;product=curved DNA-binding protein;protein_id=WP_080203874.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	15291	15653	.	+	.	ID=gene-C9E96_RS11485;Name=C9E96_RS11485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11485;old_locus_tag=C9E96_11770
NZ_PYJX01000137.1	Protein Homology	CDS	15291	15653	.	+	0	ID=cds-WP_001118902.1;Parent=gene-C9E96_RS11485;Dbxref=GenBank:WP_001118902.1;Name=WP_001118902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460086.1;locus_tag=C9E96_RS11485;product=copper resistance protein;protein_id=WP_001118902.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	15702	17588	.	+	.	ID=gene-C9E96_RS11490;Name=C9E96_RS11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11490;old_locus_tag=C9E96_11775
NZ_PYJX01000137.1	Protein Homology	CDS	15702	17588	.	+	0	ID=cds-WP_080219596.1;Parent=gene-C9E96_RS11490;Dbxref=GenBank:WP_080219596.1;Name=WP_080219596.1;Ontology_term=GO:0009055,GO:0015036;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460087.1;locus_tag=C9E96_RS11490;product=protein-disulfide reductase DsbD family protein;protein_id=WP_080219596.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	17585	18208	.	+	.	ID=gene-C9E96_RS11495;Name=C9E96_RS11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11495;old_locus_tag=C9E96_11780
NZ_PYJX01000137.1	Protein Homology	CDS	17585	18208	.	+	0	ID=cds-WP_000876687.1;Parent=gene-C9E96_RS11495;Dbxref=GenBank:WP_000876687.1;Name=WP_000876687.1;Ontology_term=GO:0015036;gbkey=CDS;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460088.1;locus_tag=C9E96_RS11495;product=DsbA family protein;protein_id=WP_000876687.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	18198	18704	.	+	.	ID=gene-C9E96_RS11500;Name=C9E96_RS11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11500;old_locus_tag=C9E96_11785
NZ_PYJX01000137.1	Protein Homology	CDS	18198	18704	.	+	0	ID=cds-WP_000907530.1;Parent=gene-C9E96_RS11500;Dbxref=GenBank:WP_000907530.1;Name=WP_000907530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460089.1;locus_tag=C9E96_RS11500;product=protein disulfide oxidoreductase;protein_id=WP_000907530.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	18837	20078	.	+	.	ID=gene-C9E96_RS11505;Name=agp;gbkey=Gene;gene=agp;gene_biotype=protein_coding;locus_tag=C9E96_RS11505;old_locus_tag=C9E96_11790
NZ_PYJX01000137.1	Protein Homology	CDS	18837	20078	.	+	0	ID=cds-WP_000749194.1;Parent=gene-C9E96_RS11505;Dbxref=GenBank:WP_000749194.1;Name=WP_000749194.1;gbkey=CDS;gene=agp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460090.1;locus_tag=C9E96_RS11505;product=bifunctional glucose-1-phosphatase/inositol phosphatase;protein_id=WP_000749194.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	20112	20339	.	-	.	ID=gene-C9E96_RS11510;Name=C9E96_RS11510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11510;old_locus_tag=C9E96_11795
NZ_PYJX01000137.1	Protein Homology	CDS	20112	20339	.	-	0	ID=cds-WP_001143125.1;Parent=gene-C9E96_RS11510;Dbxref=GenBank:WP_001143125.1;Name=WP_001143125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002898701.1;locus_tag=C9E96_RS11510;product=YccJ family protein;protein_id=WP_001143125.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	20360	20956	.	-	.	ID=gene-C9E96_RS11515;Name=wrbA;gbkey=Gene;gene=wrbA;gene_biotype=protein_coding;locus_tag=C9E96_RS11515;old_locus_tag=C9E96_11800
NZ_PYJX01000137.1	Protein Homology	CDS	20360	20956	.	-	0	ID=cds-WP_001062898.1;Parent=gene-C9E96_RS11515;Dbxref=GenBank:WP_001062898.1;Name=WP_001062898.1;Ontology_term=GO:0003955,GO:0010181;gbkey=CDS;gene=wrbA;go_function=NAD(P)H dehydrogenase (quinone) activity|0003955||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460092.1;locus_tag=C9E96_RS11515;product=NAD(P)H:quinone oxidoreductase;protein_id=WP_001062898.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	21341	21508	.	+	.	ID=gene-C9E96_RS11520;Name=C9E96_RS11520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11520;old_locus_tag=C9E96_11805
NZ_PYJX01000137.1	Protein Homology	CDS	21341	21508	.	+	0	ID=cds-WP_001273663.1;Parent=gene-C9E96_RS11520;Dbxref=GenBank:WP_001273663.1;Name=WP_001273663.1;Ontology_term=GO:0006950;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460093.1;locus_tag=C9E96_RS11520;product=general stress protein;protein_id=WP_001273663.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	pseudogene	21645	22283	.	+	.	ID=gene-C9E96_RS11525;Name=rutR;gbkey=Gene;gene=rutR;gene_biotype=pseudogene;locus_tag=C9E96_RS11525;old_locus_tag=C9E96_11810;pseudo=true
NZ_PYJX01000137.1	Protein Homology	CDS	21645	22283	.	+	0	ID=cds-C9E96_RS11525;Parent=gene-C9E96_RS11525;Note=internal stop;Ontology_term=GO:0045892,GO:0003677;gbkey=CDS;gene=rutR;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460094.1;locus_tag=C9E96_RS11525;product=HTH-type transcriptional regulator RutR;pseudo=true;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	22280	22675	.	-	.	ID=gene-C9E96_RS11530;Name=C9E96_RS11530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11530;old_locus_tag=C9E96_11815
NZ_PYJX01000137.1	Protein Homology	CDS	22280	22675	.	-	0	ID=cds-WP_080203876.1;Parent=gene-C9E96_RS11530;Dbxref=GenBank:WP_080203876.1;Name=WP_080203876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008320276.1;locus_tag=C9E96_RS11530;product=lysozyme inhibitor LprI family protein;protein_id=WP_080203876.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	22734	26696	.	-	.	ID=gene-C9E96_RS11535;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=C9E96_RS11535;old_locus_tag=C9E96_11820
NZ_PYJX01000137.1	Protein Homology	CDS	22734	26696	.	-	0	ID=cds-WP_080203877.1;Parent=gene-C9E96_RS11535;Dbxref=GenBank:WP_080203877.1;Name=WP_080203877.1;Ontology_term=GO:0006355,GO:0006561,GO:0003700,GO:0003842,GO:0004657,GO:0016620;gbkey=CDS;gene=putA;go_function=DNA-binding transcription factor activity|0003700||IEA,1-pyrroline-5-carboxylate dehydrogenase activity|0003842||IEA,proline dehydrogenase activity|0004657||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447555.1;locus_tag=C9E96_RS11535;product=trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase;protein_id=WP_080203877.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	27118	28626	.	+	.	ID=gene-C9E96_RS11540;Name=putP;gbkey=Gene;gene=putP;gene_biotype=protein_coding;locus_tag=C9E96_RS11540;old_locus_tag=C9E96_11830
NZ_PYJX01000137.1	Protein Homology	CDS	27118	28626	.	+	0	ID=cds-WP_001018463.1;Parent=gene-C9E96_RS11540;Dbxref=GenBank:WP_001018463.1;Name=WP_001018463.1;Ontology_term=GO:0006814,GO:0015824,GO:0055085,GO:0005298,GO:0031402,GO:0016020;gbkey=CDS;gene=putP;go_component=membrane|0016020||IEA;go_function=proline:sodium symporter activity|0005298||IEA,sodium ion binding|0031402||IEA;go_process=sodium ion transport|0006814||IEA,proline transport|0015824||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460097.1;locus_tag=C9E96_RS11540;product=sodium/proline symporter PutP;protein_id=WP_001018463.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	29519	30307	.	+	.	ID=gene-C9E96_RS11545;Name=phoH;gbkey=Gene;gene=phoH;gene_biotype=protein_coding;locus_tag=C9E96_RS11545;old_locus_tag=C9E96_11840
NZ_PYJX01000137.1	Protein Homology	CDS	29519	30307	.	+	0	ID=cds-WP_000533527.1;Parent=gene-C9E96_RS11545;Dbxref=GenBank:WP_000533527.1;Name=WP_000533527.1;gbkey=CDS;gene=phoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001741490.1;locus_tag=C9E96_RS11545;product=phosphate starvation-inducible protein PhoH;protein_id=WP_000533527.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	30413	31294	.	-	.	ID=gene-C9E96_RS11550;Name=C9E96_RS11550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11550;old_locus_tag=C9E96_11845
NZ_PYJX01000137.1	Protein Homology	CDS	30413	31294	.	-	0	ID=cds-WP_000433673.1;Parent=gene-C9E96_RS11550;Dbxref=GenBank:WP_000433673.1;Name=WP_000433673.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460099.1;locus_tag=C9E96_RS11550;product=MurR/RpiR family transcriptional regulator;protein_id=WP_000433673.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	31580	33076	.	-	.	ID=gene-C9E96_RS11555;Name=C9E96_RS11555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11555;old_locus_tag=C9E96_11850
NZ_PYJX01000137.1	Protein Homology	CDS	31580	33076	.	-	0	ID=cds-WP_000628085.1;Parent=gene-C9E96_RS11555;Dbxref=GenBank:WP_000628085.1;Name=WP_000628085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460100.1;locus_tag=C9E96_RS11555;product=sodium:solute symporter;protein_id=WP_000628085.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	33405	34085	.	-	.	ID=gene-C9E96_RS11560;Name=C9E96_RS11560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11560;old_locus_tag=C9E96_11860
NZ_PYJX01000137.1	Protein Homology	CDS	33405	34085	.	-	0	ID=cds-WP_001535983.1;Parent=gene-C9E96_RS11560;Dbxref=GenBank:WP_001535983.1;Name=WP_001535983.1;Ontology_term=GO:0005975,GO:0006051,GO:0019262,GO:0047465;gbkey=CDS;go_function=N-acylglucosamine-6-phosphate 2-epimerase activity|0047465||IEA;go_process=carbohydrate metabolic process|0005975||IEA,N-acetylmannosamine metabolic process|0006051||IEA,N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460101.1;locus_tag=C9E96_RS11560;product=N-acetylmannosamine-6-phosphate 2-epimerase;protein_id=WP_001535983.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	34591	35745	.	+	.	ID=gene-C9E96_RS11565;Name=C9E96_RS11565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11565;old_locus_tag=C9E96_11865
NZ_PYJX01000137.1	Protein Homology	CDS	34591	35745	.	+	0	ID=cds-WP_000525761.1;Parent=gene-C9E96_RS11565;Dbxref=GenBank:WP_000525761.1;Name=WP_000525761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460102.1;locus_tag=C9E96_RS11565;product=N-acetylneuraminate epimerase;protein_id=WP_000525761.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	35791	36483	.	+	.	ID=gene-C9E96_RS11570;Name=C9E96_RS11570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11570;old_locus_tag=C9E96_11870
NZ_PYJX01000137.1	Protein Homology	CDS	35791	36483	.	+	0	ID=cds-WP_135369831.1;Parent=gene-C9E96_RS11570;Dbxref=GenBank:WP_135369831.1;Name=WP_135369831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460103.1;locus_tag=C9E96_RS11570;product=oligogalacturonate-specific porin KdgM family protein;protein_id=WP_135369831.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	36766	38046	.	+	.	ID=gene-C9E96_RS11575;Name=C9E96_RS11575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11575;old_locus_tag=C9E96_11875
NZ_PYJX01000137.1	Protein Homology	CDS	36766	38046	.	+	0	ID=cds-WP_000560758.1;Parent=gene-C9E96_RS11575;Dbxref=GenBank:WP_000560758.1;Name=WP_000560758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460104.1;locus_tag=C9E96_RS11575;product=MFS transporter;protein_id=WP_000560758.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	38057	39163	.	+	.	ID=gene-C9E96_RS11580;Name=C9E96_RS11580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11580;old_locus_tag=C9E96_11880
NZ_PYJX01000137.1	Protein Homology	CDS	38057	39163	.	+	0	ID=cds-WP_000988589.1;Parent=gene-C9E96_RS11580;Dbxref=GenBank:WP_000988589.1;Name=WP_000988589.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460105.1;locus_tag=C9E96_RS11580;product=Gfo/Idh/MocA family protein;protein_id=WP_000988589.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	39315	39450	.	-	.	ID=gene-C9E96_RS11585;Name=C9E96_RS11585;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9E96_RS11585;old_locus_tag=C9E96_11885
NZ_PYJX01000137.1	cmsearch	ncRNA	39315	39450	.	-	.	ID=rna-C9E96_RS11585;Parent=gene-C9E96_RS11585;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS11585;product=RtT sRNA
NZ_PYJX01000137.1	cmsearch	exon	39315	39450	.	-	.	ID=exon-C9E96_RS11585-1;Parent=rna-C9E96_RS11585;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS11585;product=RtT sRNA
NZ_PYJX01000137.1	RefSeq	gene	39499	39586	.	-	.	ID=gene-C9E96_RS11590;Name=C9E96_RS11590;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS11590;old_locus_tag=C9E96_11890
NZ_PYJX01000137.1	tRNAscan-SE	tRNA	39499	39586	.	-	.	ID=rna-C9E96_RS11590;Parent=gene-C9E96_RS11590;anticodon=(pos:complement(39550..39552));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS11590;product=tRNA-Ser
NZ_PYJX01000137.1	tRNAscan-SE	exon	39499	39586	.	-	.	ID=exon-C9E96_RS11590-1;Parent=rna-C9E96_RS11590;anticodon=(pos:complement(39550..39552));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS11590;product=tRNA-Ser
NZ_PYJX01000137.1	RefSeq	gene	39823	40761	.	+	.	ID=gene-C9E96_RS11600;Name=ghrA;gbkey=Gene;gene=ghrA;gene_biotype=protein_coding;locus_tag=C9E96_RS11600;old_locus_tag=C9E96_11900
NZ_PYJX01000137.1	Protein Homology	CDS	39823	40761	.	+	0	ID=cds-WP_000402552.1;Parent=gene-C9E96_RS11600;Dbxref=GenBank:WP_000402552.1;Name=WP_000402552.1;Ontology_term=GO:0016618,GO:0030267,GO:0051287;gbkey=CDS;gene=ghrA;go_function=hydroxypyruvate reductase [NAD(P)H] activity|0016618||IEA,glyoxylate reductase (NADPH) activity|0030267||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460106.1;locus_tag=C9E96_RS11600;product=glyoxylate/hydroxypyruvate reductase GhrA;protein_id=WP_000402552.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	40846	41583	.	+	.	ID=gene-C9E96_RS11605;Name=C9E96_RS11605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11605;old_locus_tag=C9E96_11905
NZ_PYJX01000137.1	Protein Homology	CDS	40846	41583	.	+	0	ID=cds-WP_000283643.1;Parent=gene-C9E96_RS11605;Dbxref=GenBank:WP_000283643.1;Name=WP_000283643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460107.1;locus_tag=C9E96_RS11605;product=phosphatase;protein_id=WP_000283643.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	41607	42161	.	+	.	ID=gene-C9E96_RS11610;Name=C9E96_RS11610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11610;old_locus_tag=C9E96_11910
NZ_PYJX01000137.1	Protein Homology	CDS	41607	42161	.	+	0	ID=cds-WP_001001883.1;Parent=gene-C9E96_RS11610;Dbxref=GenBank:WP_001001883.1;Name=WP_001001883.1;Ontology_term=GO:0061077;gbkey=CDS;go_process=chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460108.1;locus_tag=C9E96_RS11610;product=TorD/DmsD family molecular chaperone;protein_id=WP_001001883.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	42262	42744	.	+	.	ID=gene-C9E96_RS11615;Name=C9E96_RS11615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11615;old_locus_tag=C9E96_11915
NZ_PYJX01000137.1	Protein Homology	CDS	42262	42744	.	+	0	ID=cds-WP_001546652.1;Parent=gene-C9E96_RS11615;Dbxref=GenBank:WP_001546652.1;Name=WP_001546652.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675581.1;locus_tag=C9E96_RS11615;product=DUF1097 domain-containing protein;protein_id=WP_001546652.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	42783	43616	.	-	.	ID=gene-C9E96_RS11620;Name=csgG;gbkey=Gene;gene=csgG;gene_biotype=protein_coding;locus_tag=C9E96_RS11620;old_locus_tag=C9E96_11920
NZ_PYJX01000137.1	Protein Homology	CDS	42783	43616	.	-	0	ID=cds-WP_001137620.1;Parent=gene-C9E96_RS11620;Dbxref=GenBank:WP_001137620.1;Name=WP_001137620.1;gbkey=CDS;gene=csgG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460110.1;locus_tag=C9E96_RS11620;product=curli production assembly/transport protein CsgG;protein_id=WP_001137620.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	43643	44059	.	-	.	ID=gene-C9E96_RS11625;Name=csgF;gbkey=Gene;gene=csgF;gene_biotype=protein_coding;locus_tag=C9E96_RS11625;old_locus_tag=C9E96_11925
NZ_PYJX01000137.1	Protein Homology	CDS	43643	44059	.	-	0	ID=cds-WP_001264073.1;Parent=gene-C9E96_RS11625;Dbxref=GenBank:WP_001264073.1;Name=WP_001264073.1;gbkey=CDS;gene=csgF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460111.1;locus_tag=C9E96_RS11625;product=curli production assembly/transport protein CsgF;protein_id=WP_001264073.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	44086	44481	.	-	.	ID=gene-C9E96_RS11630;Name=csgE;gbkey=Gene;gene=csgE;gene_biotype=protein_coding;locus_tag=C9E96_RS11630;old_locus_tag=C9E96_11930
NZ_PYJX01000137.1	Protein Homology	CDS	44086	44481	.	-	0	ID=cds-WP_000833307.1;Parent=gene-C9E96_RS11630;Dbxref=GenBank:WP_000833307.1;Name=WP_000833307.1;gbkey=CDS;gene=csgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460112.1;locus_tag=C9E96_RS11630;product=curli production assembly/transport protein CsgE;protein_id=WP_000833307.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	44486	45136	.	-	.	ID=gene-C9E96_RS11635;Name=csgD;gbkey=Gene;gene=csgD;gene_biotype=protein_coding;locus_tag=C9E96_RS11635;old_locus_tag=C9E96_11935
NZ_PYJX01000137.1	Protein Homology	CDS	44486	45136	.	-	0	ID=cds-WP_023993496.1;Parent=gene-C9E96_RS11635;Dbxref=GenBank:WP_023993496.1;Name=WP_023993496.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=csgD;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460113.1;locus_tag=C9E96_RS11635;product=biofilm master transcriptional regulator CsgD;protein_id=WP_023993496.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	45891	46346	.	+	.	ID=gene-C9E96_RS11640;Name=csgB;gbkey=Gene;gene=csgB;gene_biotype=protein_coding;locus_tag=C9E96_RS11640;old_locus_tag=C9E96_11945
NZ_PYJX01000137.1	Protein Homology	CDS	45891	46346	.	+	0	ID=cds-WP_000791655.1;Parent=gene-C9E96_RS11640;Dbxref=GenBank:WP_000791655.1;Name=WP_000791655.1;gbkey=CDS;gene=csgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460114.1;locus_tag=C9E96_RS11640;product=curli minor subunit CsgB;protein_id=WP_000791655.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	46388	46843	.	+	.	ID=gene-C9E96_RS11645;Name=csgA;gbkey=Gene;gene=csgA;gene_biotype=protein_coding;locus_tag=C9E96_RS11645;old_locus_tag=C9E96_11950
NZ_PYJX01000137.1	Protein Homology	CDS	46388	46843	.	+	0	ID=cds-WP_000771416.1;Parent=gene-C9E96_RS11645;Dbxref=GenBank:WP_000771416.1;Name=WP_000771416.1;gbkey=CDS;gene=csgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460115.1;locus_tag=C9E96_RS11645;product=curli major subunit CsgA;protein_id=WP_000771416.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	46905	47231	.	+	.	ID=gene-C9E96_RS11650;Name=csgC;gbkey=Gene;gene=csgC;gene_biotype=protein_coding;locus_tag=C9E96_RS11650;old_locus_tag=C9E96_11955
NZ_PYJX01000137.1	Protein Homology	CDS	46905	47231	.	+	0	ID=cds-WP_000557256.1;Parent=gene-C9E96_RS11650;Dbxref=GenBank:WP_000557256.1;Name=WP_000557256.1;gbkey=CDS;gene=csgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460116.1;locus_tag=C9E96_RS11650;product=curli assembly chaperone CsgC;protein_id=WP_000557256.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	47362	47682	.	+	.	ID=gene-C9E96_RS11655;Name=C9E96_RS11655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11655;old_locus_tag=C9E96_11960
NZ_PYJX01000137.1	Protein Homology	CDS	47362	47682	.	+	0	ID=cds-WP_023993495.1;Parent=gene-C9E96_RS11655;Dbxref=GenBank:WP_023993495.1;Name=WP_023993495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460117.1;locus_tag=C9E96_RS11655;product=type 1 fimbrial protein;protein_id=WP_023993495.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	47772	48311	.	+	.	ID=gene-C9E96_RS11660;Name=ymdB;gbkey=Gene;gene=ymdB;gene_biotype=protein_coding;locus_tag=C9E96_RS11660;old_locus_tag=C9E96_11965
NZ_PYJX01000137.1	Protein Homology	CDS	47772	48311	.	+	0	ID=cds-WP_000203941.1;Parent=gene-C9E96_RS11660;Dbxref=GenBank:WP_000203941.1;Name=WP_000203941.1;Ontology_term=GO:0003824;gbkey=CDS;gene=ymdB;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460118.1;locus_tag=C9E96_RS11660;product=O-acetyl-ADP-ribose deacetylase;protein_id=WP_000203941.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	48247	49734	.	+	.	ID=gene-C9E96_RS11665;Name=C9E96_RS11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11665;old_locus_tag=C9E96_11970
NZ_PYJX01000137.1	Protein Homology	CDS	48247	49734	.	+	0	ID=cds-WP_000976323.1;Parent=gene-C9E96_RS11665;Dbxref=GenBank:WP_000976323.1;Name=WP_000976323.1;Ontology_term=GO:0032049,GO:0090483;gbkey=CDS;go_function=phosphatidylglycerol-phosphatidylethanolamine phosphatidyltransferase activity|0090483||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706957.2;locus_tag=C9E96_RS11665;product=phospholipase D family protein;protein_id=WP_000976323.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	49751	50905	.	-	.	ID=gene-C9E96_RS11670;Name=mdoC;gbkey=Gene;gene=mdoC;gene_biotype=protein_coding;locus_tag=C9E96_RS11670;old_locus_tag=C9E96_11975
NZ_PYJX01000137.1	Protein Homology	CDS	49751	50905	.	-	0	ID=cds-WP_000100066.1;Parent=gene-C9E96_RS11670;Dbxref=GenBank:WP_000100066.1;Name=WP_000100066.1;Ontology_term=GO:0016740;gbkey=CDS;gene=mdoC;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460120.1;locus_tag=C9E96_RS11670;product=glucans biosynthesis protein MdoC;protein_id=WP_000100066.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	51177	52712	.	+	.	ID=gene-C9E96_RS11680;Name=mdoG;gbkey=Gene;gene=mdoG;gene_biotype=protein_coding;locus_tag=C9E96_RS11680;old_locus_tag=C9E96_11980
NZ_PYJX01000137.1	Protein Homology	CDS	51177	52712	.	+	0	ID=cds-WP_001562609.1;Parent=gene-C9E96_RS11680;Dbxref=GenBank:WP_001562609.1;Name=WP_001562609.1;gbkey=CDS;gene=mdoG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460121.1;locus_tag=C9E96_RS11680;product=glucans biosynthesis protein MdoG;protein_id=WP_001562609.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	52705	55248	.	+	.	ID=gene-C9E96_RS11685;Name=mdoH;gbkey=Gene;gene=mdoH;gene_biotype=protein_coding;locus_tag=C9E96_RS11685;old_locus_tag=C9E96_11985
NZ_PYJX01000137.1	Protein Homology	CDS	52705	55248	.	+	0	ID=cds-WP_001044607.1;Parent=gene-C9E96_RS11685;Dbxref=GenBank:WP_001044607.1;Name=WP_001044607.1;Ontology_term=GO:0016758;gbkey=CDS;gene=mdoH;go_function=hexosyltransferase activity|0016758||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001044602.1;locus_tag=C9E96_RS11685;product=glucans biosynthesis glucosyltransferase MdoH;protein_id=WP_001044607.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	55322	55549	.	+	.	ID=gene-C9E96_RS11690;Name=C9E96_RS11690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11690;old_locus_tag=C9E96_11990
NZ_PYJX01000137.1	Protein Homology	CDS	55322	55549	.	+	0	ID=cds-WP_001217832.1;Parent=gene-C9E96_RS11690;Dbxref=GenBank:WP_001217832.1;Name=WP_001217832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460123.1;locus_tag=C9E96_RS11690;product=YceK/YidQ family lipoprotein;protein_id=WP_001217832.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	55550	55924	.	-	.	ID=gene-C9E96_RS11695;Name=C9E96_RS11695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11695;old_locus_tag=C9E96_11995
NZ_PYJX01000137.1	Protein Homology	CDS	55550	55924	.	-	0	ID=cds-WP_000180050.1;Parent=gene-C9E96_RS11695;Dbxref=GenBank:WP_000180050.1;Name=WP_000180050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460124.1;locus_tag=C9E96_RS11695;product=MysB family protein;protein_id=WP_000180050.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	56006	57220	.	-	.	ID=gene-C9E96_RS11700;Name=mdtG;gbkey=Gene;gene=mdtG;gene_biotype=protein_coding;locus_tag=C9E96_RS11700;old_locus_tag=C9E96_12000
NZ_PYJX01000137.1	Protein Homology	CDS	56006	57220	.	-	0	ID=cds-WP_000075053.1;Parent=gene-C9E96_RS11700;Dbxref=GenBank:WP_000075053.1;Name=WP_000075053.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=mdtG;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460125.1;locus_tag=C9E96_RS11700;product=multidrug efflux MFS transporter MdtG;protein_id=WP_000075053.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	57375	58295	.	-	.	ID=gene-C9E96_RS11705;Name=C9E96_RS11705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11705;old_locus_tag=C9E96_12010
NZ_PYJX01000137.1	Protein Homology	CDS	57375	58295	.	-	0	ID=cds-WP_000163977.1;Parent=gene-C9E96_RS11705;Dbxref=GenBank:WP_000163977.1;Name=WP_000163977.1;Ontology_term=GO:0036104,GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=Kdo2-lipid A biosynthetic process|0036104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460126.1;locus_tag=C9E96_RS11705;product=Kdo(2)-lipid IV(A) acyltransferase;protein_id=WP_000163977.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	58515	59567	.	+	.	ID=gene-C9E96_RS11710;Name=C9E96_RS11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11710;old_locus_tag=C9E96_12015
NZ_PYJX01000137.1	Protein Homology	CDS	58515	59567	.	+	0	ID=cds-WP_001748342.1;Parent=gene-C9E96_RS11710;Dbxref=GenBank:WP_001748342.1;Name=WP_001748342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460127.1;locus_tag=C9E96_RS11710;product=rhodanese-related sulfurtransferase;protein_id=WP_001748342.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	59619	60194	.	-	.	ID=gene-C9E96_RS11715;Name=C9E96_RS11715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11715;old_locus_tag=C9E96_12020
NZ_PYJX01000137.1	Protein Homology	CDS	59619	60194	.	-	0	ID=cds-WP_000739886.1;Parent=gene-C9E96_RS11715;Dbxref=GenBank:WP_000739886.1;Name=WP_000739886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460128.1;locus_tag=C9E96_RS11715;product=YceI family protein;protein_id=WP_000739886.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	60191	60763	.	-	.	ID=gene-C9E96_RS11720;Name=C9E96_RS11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11720;old_locus_tag=C9E96_12025
NZ_PYJX01000137.1	Protein Homology	CDS	60191	60763	.	-	0	ID=cds-WP_001159776.1;Parent=gene-C9E96_RS11720;Dbxref=GenBank:WP_001159776.1;Name=WP_001159776.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460129.1;locus_tag=C9E96_RS11720;product=cytochrome b;protein_id=WP_001159776.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	61026	61139	.	-	.	ID=gene-C9E96_RS11725;Name=C9E96_RS11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11725;old_locus_tag=C9E96_12030
NZ_PYJX01000137.1	Protein Homology	CDS	61026	61139	.	-	0	ID=cds-WP_001253282.1;Parent=gene-C9E96_RS11725;Dbxref=GenBank:WP_001253282.1;Name=WP_001253282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460130.1;locus_tag=C9E96_RS11725;product=YceO family protein;protein_id=WP_001253282.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	61180	62298	.	-	.	ID=gene-C9E96_RS11730;Name=solA;gbkey=Gene;gene=solA;gene_biotype=protein_coding;locus_tag=C9E96_RS11730;old_locus_tag=C9E96_12035
NZ_PYJX01000137.1	Protein Homology	CDS	61180	62298	.	-	0	ID=cds-WP_080203880.1;Parent=gene-C9E96_RS11730;Dbxref=GenBank:WP_080203880.1;Name=WP_080203880.1;Ontology_term=GO:0050131;gbkey=CDS;gene=solA;go_function=N-methyl-L-amino-acid oxidase activity|0050131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460131.1;locus_tag=C9E96_RS11730;product=N-methyl-L-tryptophan oxidase;protein_id=WP_080203880.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	62411	62665	.	-	.	ID=gene-C9E96_RS11735;Name=bssS;gbkey=Gene;gene=bssS;gene_biotype=protein_coding;locus_tag=C9E96_RS11735;old_locus_tag=C9E96_12040
NZ_PYJX01000137.1	Protein Homology	CDS	62411	62665	.	-	0	ID=cds-WP_000414441.1;Parent=gene-C9E96_RS11735;Dbxref=GenBank:WP_000414441.1;Name=WP_000414441.1;gbkey=CDS;gene=bssS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460132.3;locus_tag=C9E96_RS11735;product=biofilm formation regulator BssS;protein_id=WP_000414441.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	62955	63200	.	-	.	ID=gene-C9E96_RS11740;Name=dinI;gbkey=Gene;gene=dinI;gene_biotype=protein_coding;locus_tag=C9E96_RS11740;old_locus_tag=C9E96_12045
NZ_PYJX01000137.1	Protein Homology	CDS	62955	63200	.	-	0	ID=cds-WP_001217763.1;Parent=gene-C9E96_RS11740;Dbxref=GenBank:WP_001217763.1;Name=WP_001217763.1;gbkey=CDS;gene=dinI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460133.1;locus_tag=C9E96_RS11740;product=DNA damage-inducible protein I;protein_id=WP_001217763.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	63273	64319	.	-	.	ID=gene-C9E96_RS11745;Name=pyrC;gbkey=Gene;gene=pyrC;gene_biotype=protein_coding;locus_tag=C9E96_RS11745;old_locus_tag=C9E96_12050
NZ_PYJX01000137.1	Protein Homology	CDS	63273	64319	.	-	0	ID=cds-WP_000126597.1;Parent=gene-C9E96_RS11745;Dbxref=GenBank:WP_000126597.1;Name=WP_000126597.1;Ontology_term=GO:0019856,GO:0004151;gbkey=CDS;gene=pyrC;go_function=dihydroorotase activity|0004151||IEA;go_process=pyrimidine nucleobase biosynthetic process|0019856||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460134.1;locus_tag=C9E96_RS11745;product=dihydroorotase;protein_id=WP_000126597.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	64423	64983	.	-	.	ID=gene-C9E96_RS11750;Name=C9E96_RS11750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11750;old_locus_tag=C9E96_12055
NZ_PYJX01000137.1	Protein Homology	CDS	64423	64983	.	-	0	ID=cds-WP_000713054.1;Parent=gene-C9E96_RS11750;Dbxref=GenBank:WP_000713054.1;Name=WP_000713054.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460135.1;locus_tag=C9E96_RS11750;product=lipoprotein;protein_id=WP_000713054.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	65108	65755	.	-	.	ID=gene-C9E96_RS11755;Name=grxB;gbkey=Gene;gene=grxB;gene_biotype=protein_coding;locus_tag=C9E96_RS11755;old_locus_tag=C9E96_12060
NZ_PYJX01000137.1	Protein Homology	CDS	65108	65755	.	-	0	ID=cds-WP_000780893.1;Parent=gene-C9E96_RS11755;Dbxref=GenBank:WP_000780893.1;Name=WP_000780893.1;Ontology_term=GO:0006749,GO:0004362,GO:0005515;gbkey=CDS;gene=grxB;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460136.1;locus_tag=C9E96_RS11755;product=glutaredoxin 2;protein_id=WP_000780893.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	65819	67027	.	-	.	ID=gene-C9E96_RS11760;Name=mdtH;gbkey=Gene;gene=mdtH;gene_biotype=protein_coding;locus_tag=C9E96_RS11760;old_locus_tag=C9E96_12065
NZ_PYJX01000137.1	Protein Homology	CDS	65819	67027	.	-	0	ID=cds-WP_000092178.1;Parent=gene-C9E96_RS11760;Dbxref=GenBank:WP_000092178.1;Name=WP_000092178.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=mdtH;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460137.1;locus_tag=C9E96_RS11760;product=multidrug efflux MFS transporter MdtH;protein_id=WP_000092178.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	67264	67848	.	+	.	ID=gene-C9E96_RS11765;Name=rimJ;gbkey=Gene;gene=rimJ;gene_biotype=protein_coding;locus_tag=C9E96_RS11765;old_locus_tag=C9E96_12070
NZ_PYJX01000137.1	Protein Homology	CDS	67264	67848	.	+	0	ID=cds-WP_000468204.1;Parent=gene-C9E96_RS11765;Dbxref=GenBank:WP_000468204.1;Name=WP_000468204.1;Ontology_term=GO:0008080;gbkey=CDS;gene=rimJ;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460138.1;locus_tag=C9E96_RS11765;product=ribosomal protein S5-alanine N-acetyltransferase;protein_id=WP_000468204.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	67884	68531	.	+	.	ID=gene-C9E96_RS11770;Name=C9E96_RS11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11770;old_locus_tag=C9E96_12075
NZ_PYJX01000137.1	Protein Homology	CDS	67884	68531	.	+	0	ID=cds-WP_000873045.1;Parent=gene-C9E96_RS11770;Dbxref=GenBank:WP_000873045.1;Name=WP_000873045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460139.1;locus_tag=C9E96_RS11770;product=YceH family protein;protein_id=WP_000873045.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	68533	69456	.	+	.	ID=gene-C9E96_RS11775;Name=C9E96_RS11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11775;old_locus_tag=C9E96_12080
NZ_PYJX01000137.1	Protein Homology	CDS	68533	69456	.	+	0	ID=cds-WP_023993493.1;Parent=gene-C9E96_RS11775;Dbxref=GenBank:WP_023993493.1;Name=WP_023993493.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460140.1;locus_tag=C9E96_RS11775;product=Gfo/Idh/MocA family protein;protein_id=WP_023993493.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	69760	71295	.	+	.	ID=gene-C9E96_RS11780;Name=murJ;gbkey=Gene;gene=murJ;gene_biotype=protein_coding;locus_tag=C9E96_RS11780;old_locus_tag=C9E96_12085
NZ_PYJX01000137.1	Protein Homology	CDS	69760	71295	.	+	0	ID=cds-WP_135494221.1;Parent=gene-C9E96_RS11780;Dbxref=GenBank:WP_135494221.1;Name=WP_135494221.1;Ontology_term=GO:0009252,GO:0034204;gbkey=CDS;gene=murJ;go_process=peptidoglycan biosynthetic process|0009252||IEA,lipid translocation|0034204||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226258.1;locus_tag=C9E96_RS11780;product=murein biosynthesis integral membrane protein MurJ;protein_id=WP_135494221.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	71377	71799	.	-	.	ID=gene-C9E96_RS11785;Name=flgN;gbkey=Gene;gene=flgN;gene_biotype=protein_coding;locus_tag=C9E96_RS11785;old_locus_tag=C9E96_12090
NZ_PYJX01000137.1	Protein Homology	CDS	71377	71799	.	-	0	ID=cds-WP_000197547.1;Parent=gene-C9E96_RS11785;Dbxref=GenBank:WP_000197547.1;Name=WP_000197547.1;gbkey=CDS;gene=flgN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460142.1;locus_tag=C9E96_RS11785;product=flagella biosynthesis chaperone FlgN;protein_id=WP_000197547.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	71804	72097	.	-	.	ID=gene-C9E96_RS11790;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=C9E96_RS11790;old_locus_tag=C9E96_12095
NZ_PYJX01000137.1	Protein Homology	CDS	71804	72097	.	-	0	ID=cds-WP_000020893.1;Parent=gene-C9E96_RS11790;Dbxref=GenBank:WP_000020893.1;Name=WP_000020893.1;Ontology_term=GO:0045892;gbkey=CDS;gene=flgM;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460143.1;locus_tag=C9E96_RS11790;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=WP_000020893.1;transl_table=11
NZ_PYJX01000137.1	RefSeq	gene	72189	72699	.	-	.	ID=gene-C9E96_RS11795;Name=flgA;end_range=72699,.;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=C9E96_RS11795;old_locus_tag=C9E96_12100;partial=true
NZ_PYJX01000137.1	Protein Homology	CDS	72189	72699	.	-	1	ID=cds-WP_135494223.1;Parent=gene-C9E96_RS11795;Dbxref=GenBank:WP_135494223.1;Name=WP_135494223.1;Ontology_term=GO:0001539,GO:0005198,GO:0009428;end_range=72699,.;gbkey=CDS;gene=flgA;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460144.1;locus_tag=C9E96_RS11795;partial=true;product=flagellar basal body P-ring formation chaperone FlgA;protein_id=WP_135494223.1;transl_table=11
##sequence-region NZ_PYJX01000148.1 1 19135
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000148.1	RefSeq	region	1	19135	.	+	.	ID=NZ_PYJX01000148.1:1..19135;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000148.1	RefSeq	gene	193	555	.	+	.	ID=gene-C9E96_RS13070;Name=yeaR;gbkey=Gene;gene=yeaR;gene_biotype=protein_coding;locus_tag=C9E96_RS13070;old_locus_tag=C9E96_13385
NZ_PYJX01000148.1	Protein Homology	CDS	193	555	.	+	0	ID=cds-WP_001248993.1;Parent=gene-C9E96_RS13070;Dbxref=GenBank:WP_001248993.1;Name=WP_001248993.1;gbkey=CDS;gene=yeaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460237.1;locus_tag=C9E96_RS13070;product=DUF1971 domain-containing protein YeaR;protein_id=WP_001248993.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	558	740	.	+	.	ID=gene-C9E96_RS13075;Name=C9E96_RS13075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13075;old_locus_tag=C9E96_13390
NZ_PYJX01000148.1	Protein Homology	CDS	558	740	.	+	0	ID=cds-WP_000513733.1;Parent=gene-C9E96_RS13075;Dbxref=GenBank:WP_000513733.1;Name=WP_000513733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460238.1;locus_tag=C9E96_RS13075;product=DUF1869 domain-containing protein;protein_id=WP_000513733.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	970	1611	.	+	.	ID=gene-C9E96_RS13080;Name=C9E96_RS13080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13080;old_locus_tag=C9E96_13395
NZ_PYJX01000148.1	Protein Homology	CDS	970	1611	.	+	0	ID=cds-WP_001669273.1;Parent=gene-C9E96_RS13080;Dbxref=GenBank:WP_001669273.1;Name=WP_001669273.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460239.1;locus_tag=C9E96_RS13080;product=hypothetical protein;protein_id=WP_001669273.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	1925	2173	.	+	.	ID=gene-C9E96_RS13090;Name=C9E96_RS13090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13090;old_locus_tag=C9E96_13405
NZ_PYJX01000148.1	Protein Homology	CDS	1925	2173	.	+	0	ID=cds-WP_000512149.1;Parent=gene-C9E96_RS13090;Dbxref=GenBank:WP_000512149.1;Name=WP_000512149.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460240.1;locus_tag=C9E96_RS13090;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000512149.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	2312	2410	.	-	.	ID=gene-C9E96_RS13095;Name=C9E96_RS13095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13095;old_locus_tag=C9E96_13410
NZ_PYJX01000148.1	Protein Homology	CDS	2312	2410	.	-	0	ID=cds-WP_135494284.1;Parent=gene-C9E96_RS13095;Dbxref=GenBank:WP_135494284.1;Name=WP_135494284.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791242.1;locus_tag=C9E96_RS13095;product=YoaK family small membrane protein;protein_id=WP_135494284.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	2606	2857	.	+	.	ID=gene-C9E96_RS13100;Name=C9E96_RS13100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13100;old_locus_tag=C9E96_13415
NZ_PYJX01000148.1	Protein Homology	CDS	2606	2857	.	+	0	ID=cds-WP_000673492.1;Parent=gene-C9E96_RS13100;Dbxref=GenBank:WP_000673492.1;Name=WP_000673492.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460241.1;locus_tag=C9E96_RS13100;product=putative hemolysin;protein_id=WP_000673492.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	2926	3237	.	+	.	ID=gene-C9E96_RS13105;Name=C9E96_RS13105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13105;old_locus_tag=C9E96_13420
NZ_PYJX01000148.1	Protein Homology	CDS	2926	3237	.	+	0	ID=cds-WP_000487129.1;Parent=gene-C9E96_RS13105;Dbxref=GenBank:WP_000487129.1;Name=WP_000487129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460242.1;locus_tag=C9E96_RS13105;product=hypothetical protein;protein_id=WP_000487129.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	3223	3570	.	-	.	ID=gene-C9E96_RS13110;Name=C9E96_RS13110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13110;old_locus_tag=C9E96_13425
NZ_PYJX01000148.1	Protein Homology	CDS	3223	3570	.	-	0	ID=cds-WP_001222527.1;Parent=gene-C9E96_RS13110;Dbxref=GenBank:WP_001222527.1;Name=WP_001222527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460243.1;locus_tag=C9E96_RS13110;product=DUF488 domain-containing protein;protein_id=WP_001222527.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	3689	4873	.	-	.	ID=gene-C9E96_RS13115;Name=C9E96_RS13115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13115;old_locus_tag=C9E96_13430
NZ_PYJX01000148.1	Protein Homology	CDS	3689	4873	.	-	0	ID=cds-WP_023138644.1;Parent=gene-C9E96_RS13115;Dbxref=GenBank:WP_023138644.1;Name=WP_023138644.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460244.1;locus_tag=C9E96_RS13115;product=CynX/NimT family MFS transporter;protein_id=WP_023138644.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	4974	5768	.	+	.	ID=gene-C9E96_RS13120;Name=C9E96_RS13120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13120;old_locus_tag=C9E96_13435
NZ_PYJX01000148.1	Protein Homology	CDS	4974	5768	.	+	0	ID=cds-WP_080219642.1;Parent=gene-C9E96_RS13120;Dbxref=GenBank:WP_080219642.1;Name=WP_080219642.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460245.1;locus_tag=C9E96_RS13120;product=AraC family transcriptional regulator;protein_id=WP_080219642.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	5748	6194	.	-	.	ID=gene-C9E96_RS13125;Name=C9E96_RS13125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13125;old_locus_tag=C9E96_13440
NZ_PYJX01000148.1	Protein Homology	CDS	5748	6194	.	-	0	ID=cds-WP_000460698.1;Parent=gene-C9E96_RS13125;Dbxref=GenBank:WP_000460698.1;Name=WP_000460698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460246.2;locus_tag=C9E96_RS13125;product=DUF441 domain-containing protein;protein_id=WP_000460698.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	6400	6507	.	+	.	ID=gene-C9E96_RS13130;Name=yoaI;gbkey=Gene;gene=yoaI;gene_biotype=protein_coding;locus_tag=C9E96_RS13130;old_locus_tag=C9E96_13445
NZ_PYJX01000148.1	Protein Homology	CDS	6400	6507	.	+	0	ID=cds-WP_000272237.1;Parent=gene-C9E96_RS13130;Dbxref=GenBank:WP_000272237.1;Name=WP_000272237.1;gbkey=CDS;gene=yoaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460247.1;locus_tag=C9E96_RS13130;product=small membrane protein YoaI;protein_id=WP_000272237.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	6504	7022	.	-	.	ID=gene-C9E96_RS13135;Name=C9E96_RS13135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13135;old_locus_tag=C9E96_13450
NZ_PYJX01000148.1	Protein Homology	CDS	6504	7022	.	-	0	ID=cds-WP_167852891.1;Parent=gene-C9E96_RS13135;Dbxref=GenBank:WP_167852891.1;Name=WP_167852891.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460248.1;locus_tag=C9E96_RS13135;product=YbaK/prolyl-tRNA synthetase associated domain-containing protein;protein_id=WP_167852891.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	7072	8565	.	-	.	ID=gene-C9E96_RS13140;Name=dgcJ;gbkey=Gene;gene=dgcJ;gene_biotype=protein_coding;locus_tag=C9E96_RS13140;old_locus_tag=C9E96_13455
NZ_PYJX01000148.1	Protein Homology	CDS	7072	8565	.	-	0	ID=cds-WP_080219640.1;Parent=gene-C9E96_RS13140;Dbxref=GenBank:WP_080219640.1;Name=WP_080219640.1;Ontology_term=GO:0043709,GO:1902201,GO:0052621;gbkey=CDS;gene=dgcJ;go_function=diguanylate cyclase activity|0052621||IEA;go_process=cell adhesion involved in single-species biofilm formation|0043709||IEA,negative regulation of bacterial-type flagellum-dependent cell motility|1902201||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460249.1;locus_tag=C9E96_RS13140;product=diguanylate cyclase DgcJ;protein_id=WP_080219640.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	8859	9056	.	+	.	ID=gene-C9E96_RS13145;Name=C9E96_RS13145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13145;old_locus_tag=C9E96_13460
NZ_PYJX01000148.1	GeneMarkS-2+	CDS	8859	9056	.	+	0	ID=cds-WP_001805136.1;Parent=gene-C9E96_RS13145;Dbxref=GenBank:WP_001805136.1;Name=WP_001805136.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9E96_RS13145;product=hypothetical protein;protein_id=WP_001805136.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	9206	10492	.	-	.	ID=gene-C9E96_RS13150;Name=C9E96_RS13150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13150;old_locus_tag=C9E96_13465
NZ_PYJX01000148.1	Protein Homology	CDS	9206	10492	.	-	0	ID=cds-WP_079950397.1;Parent=gene-C9E96_RS13150;Dbxref=GenBank:WP_079950397.1;Name=WP_079950397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460250.1;locus_tag=C9E96_RS13150;product=YeaH/YhbH family protein;protein_id=WP_079950397.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	10615	12549	.	-	.	ID=gene-C9E96_RS13155;Name=yeaG;gbkey=Gene;gene=yeaG;gene_biotype=protein_coding;locus_tag=C9E96_RS13155;old_locus_tag=C9E96_13470
NZ_PYJX01000148.1	Protein Homology	CDS	10615	12549	.	-	0	ID=cds-WP_135494288.1;Parent=gene-C9E96_RS13155;Dbxref=GenBank:WP_135494288.1;Name=WP_135494288.1;gbkey=CDS;gene=yeaG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011411173.1;locus_tag=C9E96_RS13155;product=protein kinase YeaG;protein_id=WP_135494288.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	12975	13721	.	+	.	ID=gene-C9E96_RS13160;Name=C9E96_RS13160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13160;old_locus_tag=C9E96_13475
NZ_PYJX01000148.1	Protein Homology	CDS	12975	13721	.	+	0	ID=cds-WP_000163762.1;Parent=gene-C9E96_RS13160;Dbxref=GenBank:WP_000163762.1;Name=WP_000163762.1;Ontology_term=GO:0009252,GO:0030674,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=protein-macromolecule adaptor activity|0030674||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460252.1;locus_tag=C9E96_RS13160;product=MipA/OmpV family protein;protein_id=WP_000163762.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	pseudogene	14011	15207	.	+	.	ID=gene-C9E96_RS13165;Name=C9E96_RS13165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS13165;old_locus_tag=C9E96_13480;pseudo=true
NZ_PYJX01000148.1	Protein Homology	CDS	14011	15207	.	+	0	ID=cds-C9E96_RS13165;Parent=gene-C9E96_RS13165;Note=internal stop;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460253.1;locus_tag=C9E96_RS13165;product=anaerobic sulfatase maturase;pseudo=true;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	15304	16161	.	+	.	ID=gene-C9E96_RS13170;Name=C9E96_RS13170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13170;old_locus_tag=C9E96_13485
NZ_PYJX01000148.1	Protein Homology	CDS	15304	16161	.	+	0	ID=cds-WP_000843751.1;Parent=gene-C9E96_RS13170;Dbxref=GenBank:WP_000843751.1;Name=WP_000843751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460254.1;locus_tag=C9E96_RS13170;product=aldo/keto reductase;protein_id=WP_000843751.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	16260	17144	.	-	.	ID=gene-C9E96_RS13175;Name=C9E96_RS13175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13175;old_locus_tag=C9E96_13490
NZ_PYJX01000148.1	Protein Homology	CDS	16260	17144	.	-	0	ID=cds-WP_000608660.1;Parent=gene-C9E96_RS13175;Dbxref=GenBank:WP_000608660.1;Name=WP_000608660.1;Ontology_term=GO:0005975,GO:0016857;gbkey=CDS;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460255.1;locus_tag=C9E96_RS13175;product=D-hexose-6-phosphate mutarotase;protein_id=WP_000608660.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	gene	17479	18474	.	-	.	ID=gene-C9E96_RS13185;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=C9E96_RS13185;old_locus_tag=C9E96_13500
NZ_PYJX01000148.1	Protein Homology	CDS	17479	18474	.	-	0	ID=cds-WP_135494290.1;Parent=gene-C9E96_RS13185;Dbxref=GenBank:WP_135494290.1;Name=WP_135494290.1;gbkey=CDS;gene=gapA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006322611.1;locus_tag=C9E96_RS13185;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_135494290.1;transl_table=11
NZ_PYJX01000148.1	RefSeq	pseudogene	18816	19058	.	+	.	ID=gene-C9E96_RS13190;Name=msrB;end_range=19058,.;gbkey=Gene;gene=msrB;gene_biotype=pseudogene;locus_tag=C9E96_RS13190;old_locus_tag=C9E96_13505;partial=true;pseudo=true
NZ_PYJX01000148.1	Protein Homology	CDS	18816	19058	.	+	0	ID=cds-C9E96_RS13190;Parent=gene-C9E96_RS13190;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006979,GO:0030091,GO:0033743;end_range=19058,.;gbkey=CDS;gene=msrB;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310514.1;locus_tag=C9E96_RS13190;partial=true;product=peptide-methionine (R)-S-oxide reductase MsrB;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000218.1 1 18859
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000218.1	RefSeq	region	1	18859	.	+	.	ID=NZ_PYJX01000218.1:1..18859;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000218.1	RefSeq	gene	1	581	.	-	.	ID=gene-C9E96_RS21680;Name=phoP;gbkey=Gene;gene=phoP;gene_biotype=protein_coding;locus_tag=C9E96_RS21680;old_locus_tag=C9E96_22210;partial=true;start_range=.,1
NZ_PYJX01000218.1	Protein Homology	CDS	1	581	.	-	0	ID=cds-WP_167852902.1;Parent=gene-C9E96_RS21680;Dbxref=GenBank:WP_167852902.1;Name=WP_167852902.1;gbkey=CDS;gene=phoP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707059.1;locus_tag=C9E96_RS21680;partial=true;product=two-component system response regulator PhoP;protein_id=WP_167852902.1;start_range=.,1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	708	2078	.	-	.	ID=gene-C9E96_RS21685;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=C9E96_RS21685;old_locus_tag=C9E96_22215
NZ_PYJX01000218.1	Protein Homology	CDS	708	2078	.	-	0	ID=cds-WP_000423766.1;Parent=gene-C9E96_RS21685;Dbxref=GenBank:WP_000423766.1;Name=WP_000423766.1;Ontology_term=GO:0006188,GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=IMP biosynthetic process|0006188||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002950897.1;locus_tag=C9E96_RS21685;product=adenylosuccinate lyase;protein_id=WP_000423766.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	2082	2723	.	-	.	ID=gene-C9E96_RS21690;Name=hflD;gbkey=Gene;gene=hflD;gene_biotype=protein_coding;locus_tag=C9E96_RS21690;old_locus_tag=C9E96_22220
NZ_PYJX01000218.1	Protein Homology	CDS	2082	2723	.	-	0	ID=cds-WP_001519653.1;Parent=gene-C9E96_RS21690;Dbxref=GenBank:WP_001519653.1;Name=WP_001519653.1;gbkey=CDS;gene=hflD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415650.1;locus_tag=C9E96_RS21690;product=high frequency lysogenization protein HflD;protein_id=WP_001519653.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	2810	3916	.	-	.	ID=gene-C9E96_RS21695;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;gene_synonym=trmU;locus_tag=C9E96_RS21695;old_locus_tag=C9E96_22225
NZ_PYJX01000218.1	Protein Homology	CDS	2810	3916	.	-	0	ID=cds-WP_000004540.1;Parent=gene-C9E96_RS21695;Dbxref=GenBank:WP_000004540.1;Name=WP_000004540.1;Ontology_term=GO:0002143,GO:0006396,GO:0004808,GO:0016783,GO:0005737;gbkey=CDS;gene=mnmA;go_component=cytoplasm|0005737||IEA;go_function=tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity|0004808||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA wobble position uridine thiolation|0002143||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309632.2;locus_tag=C9E96_RS21695;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_000004540.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	3970	4431	.	-	.	ID=gene-C9E96_RS21700;Name=C9E96_RS21700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21700;old_locus_tag=C9E96_22230
NZ_PYJX01000218.1	Protein Homology	CDS	3970	4431	.	-	0	ID=cds-WP_000476069.1;Parent=gene-C9E96_RS21700;Dbxref=GenBank:WP_000476069.1;Name=WP_000476069.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460205.1;locus_tag=C9E96_RS21700;product=NUDIX hydrolase;protein_id=WP_000476069.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	4443	4772	.	-	.	ID=gene-C9E96_RS21705;Name=C9E96_RS21705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21705;old_locus_tag=C9E96_22235
NZ_PYJX01000218.1	Protein Homology	CDS	4443	4772	.	-	0	ID=cds-WP_000825956.1;Parent=gene-C9E96_RS21705;Dbxref=GenBank:WP_000825956.1;Name=WP_000825956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460206.1;locus_tag=C9E96_RS21705;product=lysozyme inhibitor LprI family protein;protein_id=WP_000825956.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	4769	5434	.	-	.	ID=gene-C9E96_RS21710;Name=rluE;gbkey=Gene;gene=rluE;gene_biotype=protein_coding;locus_tag=C9E96_RS21710;old_locus_tag=C9E96_22240
NZ_PYJX01000218.1	Protein Homology	CDS	4769	5434	.	-	0	ID=cds-WP_023208616.1;Parent=gene-C9E96_RS21710;Dbxref=GenBank:WP_023208616.1;Name=WP_023208616.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;gene=rluE;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460207.1;locus_tag=C9E96_RS21710;product=23S rRNA pseudouridine(2457) synthase RluE;protein_id=WP_023208616.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	5606	6856	.	+	.	ID=gene-C9E96_RS21715;Name=icd;gbkey=Gene;gene=icd;gene_biotype=protein_coding;locus_tag=C9E96_RS21715;old_locus_tag=C9E96_22245
NZ_PYJX01000218.1	Protein Homology	CDS	5606	6856	.	+	0	ID=cds-WP_000444508.1;Parent=gene-C9E96_RS21715;Dbxref=GenBank:WP_000444508.1;Name=WP_000444508.1;Ontology_term=GO:0006099,GO:0000287,GO:0004450,GO:0051287;gbkey=CDS;gene=icd;go_function=magnesium ion binding|0000287||IEA,isocitrate dehydrogenase (NADP+) activity|0004450||IEA,NAD binding|0051287||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000444467.1;locus_tag=C9E96_RS21715;product=NADP-dependent isocitrate dehydrogenase;protein_id=WP_000444508.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	7304	8428	.	+	.	ID=gene-C9E96_RS21720;Name=sopF;gbkey=Gene;gene=sopF;gene_biotype=protein_coding;locus_tag=C9E96_RS21720;old_locus_tag=C9E96_22250
NZ_PYJX01000218.1	Protein Homology	CDS	7304	8428	.	+	0	ID=cds-WP_000917269.1;Parent=gene-C9E96_RS21720;Dbxref=GenBank:WP_000917269.1;Name=WP_000917269.1;gbkey=CDS;gene=sopF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460209.1;locus_tag=C9E96_RS21720;product=type III secretion system effector SopF;protein_id=WP_000917269.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	8890	9096	.	-	.	ID=gene-C9E96_RS24460;Name=C9E96_RS24460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS24460;old_locus_tag=C9E96_22260
NZ_PYJX01000218.1	Protein Homology	CDS	8890	9096	.	-	0	ID=cds-WP_000787625.1;Parent=gene-C9E96_RS24460;Dbxref=GenBank:WP_000787625.1;Name=WP_000787625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000787631.1;locus_tag=C9E96_RS24460;product=hypothetical protein;protein_id=WP_000787625.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	9418	10206	.	-	.	ID=gene-C9E96_RS21730;Name=envF;gbkey=Gene;gene=envF;gene_biotype=protein_coding;locus_tag=C9E96_RS21730;old_locus_tag=C9E96_22270
NZ_PYJX01000218.1	Protein Homology	CDS	9418	10206	.	-	0	ID=cds-WP_001033399.1;Parent=gene-C9E96_RS21730;Dbxref=GenBank:WP_001033399.1;Name=WP_001033399.1;gbkey=CDS;gene=envF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460210.1;locus_tag=C9E96_RS21730;product=putative envelope lipoprotein EnvF;protein_id=WP_001033399.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	10696	10935	.	-	.	ID=gene-C9E96_RS21735;Name=msgA;gbkey=Gene;gene=msgA;gene_biotype=protein_coding;locus_tag=C9E96_RS21735;old_locus_tag=C9E96_22275
NZ_PYJX01000218.1	Protein Homology	CDS	10696	10935	.	-	0	ID=cds-WP_000497451.1;Parent=gene-C9E96_RS21735;Dbxref=GenBank:WP_000497451.1;Name=WP_000497451.1;gbkey=CDS;gene=msgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460211.1;locus_tag=C9E96_RS21735;product=virulence protein MsgA;protein_id=WP_000497451.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	11126	11647	.	-	.	ID=gene-C9E96_RS21740;Name=C9E96_RS21740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21740;old_locus_tag=C9E96_22280
NZ_PYJX01000218.1	Protein Homology	CDS	11126	11647	.	-	0	ID=cds-WP_011233071.1;Parent=gene-C9E96_RS21740;Dbxref=GenBank:WP_011233071.1;Name=WP_011233071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460212.1;locus_tag=C9E96_RS21740;product=RICIN domain-containing protein;protein_id=WP_011233071.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	12062	12274	.	-	.	ID=gene-C9E96_RS21745;Name=cspF;gbkey=Gene;gene=cspF;gene_biotype=protein_coding;locus_tag=C9E96_RS21745;old_locus_tag=C9E96_22285
NZ_PYJX01000218.1	Protein Homology	CDS	12062	12274	.	-	0	ID=cds-WP_052909607.1;Parent=gene-C9E96_RS21745;Dbxref=GenBank:WP_052909607.1;Name=WP_052909607.1;gbkey=CDS;gene=cspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460213.1;locus_tag=C9E96_RS21745;product=cold shock-like protein CspF;protein_id=WP_052909607.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	12406	12669	.	-	.	ID=gene-C9E96_RS21750;Name=pagD;gbkey=Gene;gene=pagD;gene_biotype=protein_coding;locus_tag=C9E96_RS21750;old_locus_tag=C9E96_22290
NZ_PYJX01000218.1	Protein Homology	CDS	12406	12669	.	-	0	ID=cds-WP_012664625.1;Parent=gene-C9E96_RS21750;Dbxref=GenBank:WP_012664625.1;Name=WP_012664625.1;gbkey=CDS;gene=pagD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460214.1;locus_tag=C9E96_RS21750;product=virulence protein PagD;protein_id=WP_012664625.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	13481	14038	.	+	.	ID=gene-C9E96_RS21765;Name=pagC;gbkey=Gene;gene=pagC;gene_biotype=protein_coding;locus_tag=C9E96_RS21765;old_locus_tag=C9E96_22305
NZ_PYJX01000218.1	Protein Homology	CDS	13481	14038	.	+	0	ID=cds-WP_000789471.1;Parent=gene-C9E96_RS21765;Dbxref=GenBank:WP_000789471.1;Name=WP_000789471.1;gbkey=CDS;gene=pagC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460215.1;locus_tag=C9E96_RS21765;product=virulence membrane protein PagC;protein_id=WP_000789471.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	14429	14505	.	+	.	ID=gene-C9E96_RS21770;Name=C9E96_RS21770;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS21770;old_locus_tag=C9E96_22310
NZ_PYJX01000218.1	tRNAscan-SE	tRNA	14429	14505	.	+	.	ID=rna-C9E96_RS21770;Parent=gene-C9E96_RS21770;anticodon=(pos:14463..14465);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS21770;product=tRNA-Arg
NZ_PYJX01000218.1	tRNAscan-SE	exon	14429	14505	.	+	.	ID=exon-C9E96_RS21770-1;Parent=rna-C9E96_RS21770;anticodon=(pos:14463..14465);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS21770;product=tRNA-Arg
NZ_PYJX01000218.1	RefSeq	gene	15260	15604	.	-	.	ID=gene-C9E96_RS21775;Name=C9E96_RS21775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21775;old_locus_tag=C9E96_22315
NZ_PYJX01000218.1	Protein Homology	CDS	15260	15604	.	-	0	ID=cds-WP_000977725.1;Parent=gene-C9E96_RS21775;Dbxref=GenBank:WP_000977725.1;Name=WP_000977725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460216.1;locus_tag=C9E96_RS21775;product=c-type lysozyme inhibitor;protein_id=WP_000977725.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	16307	16579	.	+	.	ID=gene-C9E96_RS21785;Name=C9E96_RS21785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21785;old_locus_tag=C9E96_22325
NZ_PYJX01000218.1	Protein Homology	CDS	16307	16579	.	+	0	ID=cds-WP_000927827.1;Parent=gene-C9E96_RS21785;Dbxref=GenBank:WP_000927827.1;Name=WP_000927827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460217.1;locus_tag=C9E96_RS21785;product=hypothetical protein;protein_id=WP_000927827.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	16732	17199	.	+	.	ID=gene-C9E96_RS21790;Name=C9E96_RS21790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21790;old_locus_tag=C9E96_22330
NZ_PYJX01000218.1	Protein Homology	CDS	16732	17199	.	+	0	ID=cds-WP_001218120.1;Parent=gene-C9E96_RS21790;Dbxref=GenBank:WP_001218120.1;Name=WP_001218120.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460218.1;locus_tag=C9E96_RS21790;product=Hsp20 family protein;protein_id=WP_001218120.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	17538	18581	.	+	.	ID=gene-C9E96_RS21795;Name=C9E96_RS21795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21795;old_locus_tag=C9E96_22335
NZ_PYJX01000218.1	Protein Homology	CDS	17538	18581	.	+	0	ID=cds-WP_000761734.1;Parent=gene-C9E96_RS21795;Dbxref=GenBank:WP_000761734.1;Name=WP_000761734.1;Ontology_term=GO:0005975,GO:0004308,GO:0016997;gbkey=CDS;go_function=exo-alpha-sialidase activity|0004308||IEA,alpha-sialidase activity|0016997||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460219.1;locus_tag=C9E96_RS21795;product=sialidase family protein;protein_id=WP_000761734.1;transl_table=11
NZ_PYJX01000218.1	RefSeq	gene	18664	18859	.	-	.	ID=gene-C9E96_RS21800;Name=C9E96_RS21800;end_range=18859,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21800;old_locus_tag=C9E96_22340;partial=true
NZ_PYJX01000218.1	Protein Homology	CDS	18664	18859	.	-	1	ID=cds-WP_210114533.1;Parent=gene-C9E96_RS21800;Dbxref=GenBank:WP_210114533.1;Name=WP_210114533.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;end_range=18859,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460220.1;locus_tag=C9E96_RS21800;partial=true;product=cytochrome b;protein_id=WP_210114533.1;transl_table=11
##sequence-region NZ_PYJX01000083.1 1 18749
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000083.1	RefSeq	region	1	18749	.	+	.	ID=NZ_PYJX01000083.1:1..18749;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000083.1	RefSeq	gene	1	460	.	-	.	ID=gene-C9E96_RS07165;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=protein_coding;locus_tag=C9E96_RS07165;old_locus_tag=C9E96_07340;partial=true;start_range=.,1
NZ_PYJX01000083.1	Protein Homology	CDS	1	460	.	-	0	ID=cds-WP_041027741.1;Parent=gene-C9E96_RS07165;Dbxref=GenBank:WP_041027741.1;Name=WP_041027741.1;Ontology_term=GO:0009236,GO:0000166,GO:0043752;gbkey=CDS;gene=cobU;go_function=nucleotide binding|0000166||IEA,adenosylcobinamide kinase activity|0043752||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460963.1;locus_tag=C9E96_RS07165;partial=true;product=bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase;protein_id=WP_041027741.1;start_range=.,1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	457	1977	.	-	.	ID=gene-C9E96_RS07170;Name=C9E96_RS07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07170;old_locus_tag=C9E96_07345
NZ_PYJX01000083.1	Protein Homology	CDS	457	1977	.	-	0	ID=cds-WP_023993356.1;Parent=gene-C9E96_RS07170;Dbxref=GenBank:WP_023993356.1;Name=WP_023993356.1;Ontology_term=GO:0009236,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460964.1;locus_tag=C9E96_RS07170;product=cobyric acid synthase;protein_id=WP_023993356.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	1974	2789	.	-	.	ID=gene-C9E96_RS07175;Name=C9E96_RS07175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07175;old_locus_tag=C9E96_07350
NZ_PYJX01000083.1	Protein Homology	CDS	1974	2789	.	-	0	ID=cds-WP_023993357.1;Parent=gene-C9E96_RS07175;Dbxref=GenBank:WP_023993357.1;Name=WP_023993357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460965.1;locus_tag=C9E96_RS07175;product=energy-coupling factor ABC transporter ATP-binding protein;protein_id=WP_023993357.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	2798	3475	.	-	.	ID=gene-C9E96_RS07180;Name=C9E96_RS07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07180;old_locus_tag=C9E96_07355
NZ_PYJX01000083.1	Protein Homology	CDS	2798	3475	.	-	0	ID=cds-WP_135494040.1;Parent=gene-C9E96_RS07180;Dbxref=GenBank:WP_135494040.1;Name=WP_135494040.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460966.1;locus_tag=C9E96_RS07180;product=energy-coupling factor ABC transporter transmembrane protein;protein_id=WP_135494040.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	3462	3743	.	-	.	ID=gene-C9E96_RS07185;Name=C9E96_RS07185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07185;old_locus_tag=C9E96_07360
NZ_PYJX01000083.1	Protein Homology	CDS	3462	3743	.	-	0	ID=cds-WP_000753212.1;Parent=gene-C9E96_RS07185;Dbxref=GenBank:WP_000753212.1;Name=WP_000753212.1;Ontology_term=GO:0006824,GO:0009236,GO:0015087,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=cobalt ion transmembrane transporter activity|0015087||IEA;go_process=cobalt ion transport|0006824||IEA,cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460967.1;locus_tag=C9E96_RS07185;product=energy-coupling factor ABC transporter substrate-binding protein;protein_id=WP_000753212.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	pseudogene	3745	4482	.	-	.	ID=gene-C9E96_RS07190;Name=cbiM;gbkey=Gene;gene=cbiM;gene_biotype=pseudogene;locus_tag=C9E96_RS07190;old_locus_tag=C9E96_07365;pseudo=true
NZ_PYJX01000083.1	Protein Homology	CDS	3745	4482	.	-	0	ID=cds-C9E96_RS07190;Parent=gene-C9E96_RS07190;Note=internal stop;Ontology_term=GO:0006824,GO:0009236,GO:0016020,GO:0043190;gbkey=CDS;gene=cbiM;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=cobalt ion transport|0006824||IEA,cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460968.3;locus_tag=C9E96_RS07190;product=cobalt ECF transporter S component CbiM;pseudo=true;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	4479	5192	.	-	.	ID=gene-C9E96_RS07195;Name=C9E96_RS07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07195;old_locus_tag=C9E96_07370
NZ_PYJX01000083.1	Protein Homology	CDS	4479	5192	.	-	0	ID=cds-WP_080203687.1;Parent=gene-C9E96_RS07195;Dbxref=GenBank:WP_080203687.1;Name=WP_080203687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460969.1;locus_tag=C9E96_RS07195;product=cobalt-factor II C(20)-methyltransferase;protein_id=WP_080203687.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	5189	5983	.	-	.	ID=gene-C9E96_RS07200;Name=cbiK;gbkey=Gene;gene=cbiK;gene_biotype=protein_coding;locus_tag=C9E96_RS07200;old_locus_tag=C9E96_07375
NZ_PYJX01000083.1	Protein Homology	CDS	5189	5983	.	-	0	ID=cds-WP_000709784.1;Parent=gene-C9E96_RS07200;Dbxref=GenBank:WP_000709784.1;Name=WP_000709784.1;Ontology_term=GO:0006779,GO:0016852,GO:0046906;gbkey=CDS;gene=cbiK;go_function=sirohydrochlorin cobaltochelatase activity|0016852||IEA,tetrapyrrole binding|0046906||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460970.1;locus_tag=C9E96_RS07200;product=sirohydrochlorin cobaltochelatase;protein_id=WP_000709784.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	5986	6777	.	-	.	ID=gene-C9E96_RS07205;Name=C9E96_RS07205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07205;old_locus_tag=C9E96_07380
NZ_PYJX01000083.1	Protein Homology	CDS	5986	6777	.	-	0	ID=cds-WP_020437396.1;Parent=gene-C9E96_RS07205;Dbxref=GenBank:WP_020437396.1;Name=WP_020437396.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460971.1;locus_tag=C9E96_RS07205;product=cobalt-precorrin-6A reductase;protein_id=WP_020437396.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	6774	7499	.	-	.	ID=gene-C9E96_RS07210;Name=C9E96_RS07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07210;old_locus_tag=C9E96_07385
NZ_PYJX01000083.1	Protein Homology	CDS	6774	7499	.	-	0	ID=cds-WP_135494032.1;Parent=gene-C9E96_RS07210;Dbxref=GenBank:WP_135494032.1;Name=WP_135494032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460972.1;locus_tag=C9E96_RS07210;product=precorrin-3B C(17)-methyltransferase;protein_id=WP_135494032.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	7499	8554	.	-	.	ID=gene-C9E96_RS07215;Name=cbiG;gbkey=Gene;gene=cbiG;gene_biotype=protein_coding;locus_tag=C9E96_RS07215;old_locus_tag=C9E96_07390
NZ_PYJX01000083.1	Protein Homology	CDS	7499	8554	.	-	0	ID=cds-WP_023993360.1;Parent=gene-C9E96_RS07215;Dbxref=GenBank:WP_023993360.1;Name=WP_023993360.1;gbkey=CDS;gene=cbiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460973.1;locus_tag=C9E96_RS07215;product=cobalt-precorrin 5A hydrolase;protein_id=WP_023993360.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	8535	9308	.	-	.	ID=gene-C9E96_RS07220;Name=C9E96_RS07220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07220;old_locus_tag=C9E96_07395
NZ_PYJX01000083.1	Protein Homology	CDS	8535	9308	.	-	0	ID=cds-WP_017465525.1;Parent=gene-C9E96_RS07220;Dbxref=GenBank:WP_017465525.1;Name=WP_017465525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460974.1;locus_tag=C9E96_RS07220;product=cobalt-precorrin-4 methyltransferase;protein_id=WP_017465525.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	9292	9870	.	-	.	ID=gene-C9E96_RS07225;Name=C9E96_RS07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07225;old_locus_tag=C9E96_07400
NZ_PYJX01000083.1	Protein Homology	CDS	9292	9870	.	-	0	ID=cds-WP_135494034.1;Parent=gene-C9E96_RS07225;Dbxref=GenBank:WP_135494034.1;Name=WP_135494034.1;Ontology_term=GO:0009236,GO:0008276;gbkey=CDS;go_function=protein methyltransferase activity|0008276||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460975.1;locus_tag=C9E96_RS07225;product=decarboxylating cobalt-precorrin-6B (C(15))-methyltransferase;protein_id=WP_135494034.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	9860	10465	.	-	.	ID=gene-C9E96_RS07230;Name=C9E96_RS07230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07230;old_locus_tag=C9E96_07405
NZ_PYJX01000083.1	Protein Homology	CDS	9860	10465	.	-	0	ID=cds-WP_000958841.1;Parent=gene-C9E96_RS07230;Dbxref=GenBank:WP_000958841.1;Name=WP_000958841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460976.1;locus_tag=C9E96_RS07230;product=cobalt-precorrin-7 (C(5))-methyltransferase;protein_id=WP_000958841.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	10459	11598	.	-	.	ID=gene-C9E96_RS07235;Name=cbiD;gbkey=Gene;gene=cbiD;gene_biotype=protein_coding;locus_tag=C9E96_RS07235;old_locus_tag=C9E96_07410
NZ_PYJX01000083.1	Protein Homology	CDS	10459	11598	.	-	0	ID=cds-WP_001292914.1;Parent=gene-C9E96_RS07235;Dbxref=GenBank:WP_001292914.1;Name=WP_001292914.1;Ontology_term=GO:0009236,GO:0005737;gbkey=CDS;gene=cbiD;go_component=cytoplasm|0005737||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460977.1;locus_tag=C9E96_RS07235;product=cobalt-precorrin-5B (C(1))-methyltransferase CbiD;protein_id=WP_001292914.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	11598	12230	.	-	.	ID=gene-C9E96_RS07240;Name=C9E96_RS07240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07240;old_locus_tag=C9E96_07415
NZ_PYJX01000083.1	Protein Homology	CDS	11598	12230	.	-	0	ID=cds-WP_000558995.1;Parent=gene-C9E96_RS07240;Dbxref=GenBank:WP_000558995.1;Name=WP_000558995.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460978.1;locus_tag=C9E96_RS07240;product=cobalt-precorrin-8 methylmutase;protein_id=WP_000558995.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	12241	13200	.	-	.	ID=gene-C9E96_RS07245;Name=cbiB;gbkey=Gene;gene=cbiB;gene_biotype=protein_coding;locus_tag=C9E96_RS07245;old_locus_tag=C9E96_07420
NZ_PYJX01000083.1	Protein Homology	CDS	12241	13200	.	-	0	ID=cds-WP_135494036.1;Parent=gene-C9E96_RS07245;Dbxref=GenBank:WP_135494036.1;Name=WP_135494036.1;Ontology_term=GO:0009236,GO:0048472,GO:0016020;gbkey=CDS;gene=cbiB;go_component=membrane|0016020||IEA;go_function=threonine-phosphate decarboxylase activity|0048472||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460979.1;locus_tag=C9E96_RS07245;product=adenosylcobinamide-phosphate synthase CbiB;protein_id=WP_135494036.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	13197	14576	.	-	.	ID=gene-C9E96_RS07250;Name=C9E96_RS07250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS07250;old_locus_tag=C9E96_07425
NZ_PYJX01000083.1	Protein Homology	CDS	13197	14576	.	-	0	ID=cds-WP_135494038.1;Parent=gene-C9E96_RS07250;Dbxref=GenBank:WP_135494038.1;Name=WP_135494038.1;Ontology_term=GO:0042242;gbkey=CDS;go_function=cobyrinic acid a%2Cc-diamide synthase activity|0042242||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460980.1;locus_tag=C9E96_RS07250;product=cobyrinate a%2Cc-diamide synthase;protein_id=WP_135494038.1;transl_table=11
NZ_PYJX01000083.1	cmsearch	riboswitch	14674	14848	.	-	.	ID=id-NZ_PYJX01000083.1:14674..14848;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYJX01000083.1	RefSeq	gene	15174	16085	.	-	.	ID=gene-C9E96_RS07255;Name=pocR;gbkey=Gene;gene=pocR;gene_biotype=protein_coding;locus_tag=C9E96_RS07255;old_locus_tag=C9E96_07430
NZ_PYJX01000083.1	Protein Homology	CDS	15174	16085	.	-	0	ID=cds-WP_000622326.1;Parent=gene-C9E96_RS07255;Dbxref=GenBank:WP_000622326.1;Name=WP_000622326.1;Ontology_term=GO:0009236,GO:0051144,GO:0003700,GO:0043565;gbkey=CDS;gene=pocR;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=cobalamin biosynthetic process|0009236||IEA,propanediol catabolic process|0051144||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460981.1;locus_tag=C9E96_RS07255;product=transcriptional regulator PocR;protein_id=WP_000622326.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	16302	17096	.	-	.	ID=gene-C9E96_RS07260;Name=pduF;gbkey=Gene;gene=pduF;gene_biotype=protein_coding;locus_tag=C9E96_RS07260;old_locus_tag=C9E96_07435
NZ_PYJX01000083.1	Protein Homology	CDS	16302	17096	.	-	0	ID=cds-WP_001000023.1;Parent=gene-C9E96_RS07260;Dbxref=GenBank:WP_001000023.1;Name=WP_001000023.1;gbkey=CDS;gene=pduF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460982.1;locus_tag=C9E96_RS07260;product=propanediol diffusion facilitator PduF;protein_id=WP_001000023.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	17621	17905	.	+	.	ID=gene-C9E96_RS07265;Name=pduA;gbkey=Gene;gene=pduA;gene_biotype=protein_coding;locus_tag=C9E96_RS07265;old_locus_tag=C9E96_07440
NZ_PYJX01000083.1	Protein Homology	CDS	17621	17905	.	+	0	ID=cds-WP_001183618.1;Parent=gene-C9E96_RS07265;Dbxref=GenBank:WP_001183618.1;Name=WP_001183618.1;gbkey=CDS;gene=pduA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460983.1;locus_tag=C9E96_RS07265;product=propanediol utilization microcompartment protein PduA;protein_id=WP_001183618.1;transl_table=11
NZ_PYJX01000083.1	RefSeq	gene	17902	18749	.	+	.	ID=gene-C9E96_RS07270;Name=pduB;end_range=18749,.;gbkey=Gene;gene=pduB;gene_biotype=protein_coding;locus_tag=C9E96_RS07270;old_locus_tag=C9E96_07445;partial=true
NZ_PYJX01000083.1	Protein Homology	CDS	17902	18749	.	+	0	ID=cds-WP_245306427.1;Parent=gene-C9E96_RS07270;Dbxref=GenBank:WP_245306427.1;Name=WP_245306427.1;Ontology_term=GO:0005198,GO:0031469;end_range=18749,.;gbkey=CDS;gene=pduB;go_component=bacterial microcompartment|0031469||IEA;go_function=structural molecule activity|0005198||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128019.1;locus_tag=C9E96_RS07270;partial=true;product=propanediol utilization microcompartment protein PduB;protein_id=WP_245306427.1;transl_table=11
##sequence-region NZ_PYJX01000174.1 1 18621
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000174.1	RefSeq	region	1	18621	.	+	.	ID=NZ_PYJX01000174.1:1..18621;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000174.1	RefSeq	gene	808	1053	.	+	.	ID=gene-C9E96_RS16635;Name=C9E96_RS16635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16635;old_locus_tag=C9E96_17055
NZ_PYJX01000174.1	Protein Homology	CDS	808	1053	.	+	0	ID=cds-WP_023193134.1;Parent=gene-C9E96_RS16635;Dbxref=GenBank:WP_023193134.1;Name=WP_023193134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001543206.1;locus_tag=C9E96_RS16635;product=hypothetical protein;protein_id=WP_023193134.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	pseudogene	1144	1472	.	+	.	ID=gene-C9E96_RS16640;Name=C9E96_RS16640;end_range=1472,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS16640;old_locus_tag=C9E96_17060;partial=true;pseudo=true;start_range=.,1144
NZ_PYJX01000174.1	Protein Homology	CDS	1144	1472	.	+	0	ID=cds-C9E96_RS16640;Parent=gene-C9E96_RS16640;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=1472,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015869530.1;locus_tag=C9E96_RS16640;partial=true;product=transposase;pseudo=true;start_range=.,1144;transl_table=11
NZ_PYJX01000174.1	RefSeq	pseudogene	1453	1694	.	+	.	ID=gene-C9E96_RS16645;Name=C9E96_RS16645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS16645;old_locus_tag=C9E96_17065;partial=true;pseudo=true;start_range=.,1453
NZ_PYJX01000174.1	Protein Homology	CDS	1453	1694	.	+	0	ID=cds-C9E96_RS16645;Parent=gene-C9E96_RS16645;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015995291.1;locus_tag=C9E96_RS16645;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,1453;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	1710	1786	.	-	.	ID=gene-C9E96_RS16650;Name=C9E96_RS16650;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS16650;old_locus_tag=C9E96_17070
NZ_PYJX01000174.1	tRNAscan-SE	tRNA	1710	1786	.	-	.	ID=rna-C9E96_RS16650;Parent=gene-C9E96_RS16650;anticodon=(pos:complement(1750..1752));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS16650;product=tRNA-Arg
NZ_PYJX01000174.1	tRNAscan-SE	exon	1710	1786	.	-	.	ID=exon-C9E96_RS16650-1;Parent=rna-C9E96_RS16650;anticodon=(pos:complement(1750..1752));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS16650;product=tRNA-Arg
NZ_PYJX01000174.1	RefSeq	gene	2041	2637	.	+	.	ID=gene-C9E96_RS16660;Name=fimW;gbkey=Gene;gene=fimW;gene_biotype=protein_coding;locus_tag=C9E96_RS16660;old_locus_tag=C9E96_17080
NZ_PYJX01000174.1	Protein Homology	CDS	2041	2637	.	+	0	ID=cds-WP_000948629.1;Parent=gene-C9E96_RS16660;Dbxref=GenBank:WP_000948629.1;Name=WP_000948629.1;gbkey=CDS;gene=fimW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459547.1;locus_tag=C9E96_RS16660;product=fimbria biosynthesis transcriptional regulator FimW;protein_id=WP_000948629.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	2799	3110	.	+	.	ID=gene-C9E96_RS16665;Name=C9E96_RS16665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16665;old_locus_tag=C9E96_17085
NZ_PYJX01000174.1	Protein Homology	CDS	2799	3110	.	+	0	ID=cds-WP_023203049.1;Parent=gene-C9E96_RS16665;Dbxref=GenBank:WP_023203049.1;Name=WP_023203049.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459546.1;locus_tag=C9E96_RS16665;product=hypothetical protein;protein_id=WP_023203049.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	3129	3851	.	+	.	ID=gene-C9E96_RS16670;Name=fimY;gbkey=Gene;gene=fimY;gene_biotype=protein_coding;locus_tag=C9E96_RS16670;old_locus_tag=C9E96_17090
NZ_PYJX01000174.1	Protein Homology	CDS	3129	3851	.	+	0	ID=cds-WP_023993876.1;Parent=gene-C9E96_RS16670;Dbxref=GenBank:WP_023993876.1;Name=WP_023993876.1;gbkey=CDS;gene=fimY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459545.1;locus_tag=C9E96_RS16670;product=fimbria biosynthesis regulator FimY;protein_id=WP_023993876.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	4455	5087	.	+	.	ID=gene-C9E96_RS16675;Name=fimZ;gbkey=Gene;gene=fimZ;gene_biotype=protein_coding;locus_tag=C9E96_RS16675;old_locus_tag=C9E96_17095
NZ_PYJX01000174.1	Protein Homology	CDS	4455	5087	.	+	0	ID=cds-WP_000801273.1;Parent=gene-C9E96_RS16675;Dbxref=GenBank:WP_000801273.1;Name=WP_000801273.1;gbkey=CDS;gene=fimZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459544.1;locus_tag=C9E96_RS16675;product=fimbria biosynthesis transcriptional regulator FimZ;protein_id=WP_000801273.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	5133	5651	.	-	.	ID=gene-C9E96_RS16680;Name=sfmF;gbkey=Gene;gene=sfmF;gene_biotype=protein_coding;locus_tag=C9E96_RS16680;old_locus_tag=C9E96_17100
NZ_PYJX01000174.1	Protein Homology	CDS	5133	5651	.	-	0	ID=cds-WP_000577507.1;Parent=gene-C9E96_RS16680;Dbxref=GenBank:WP_000577507.1;Name=WP_000577507.1;gbkey=CDS;gene=sfmF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459543.1;locus_tag=C9E96_RS16680;product=fimbria assembly protein;protein_id=WP_000577507.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	5661	6668	.	-	.	ID=gene-C9E96_RS16685;Name=fimH;gbkey=Gene;gene=fimH;gene_biotype=protein_coding;locus_tag=C9E96_RS16685;old_locus_tag=C9E96_17105
NZ_PYJX01000174.1	Protein Homology	CDS	5661	6668	.	-	0	ID=cds-WP_080204029.1;Parent=gene-C9E96_RS16685;Dbxref=GenBank:WP_080204029.1;Name=WP_080204029.1;Ontology_term=GO:0007155;gbkey=CDS;gene=fimH;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459542.1;locus_tag=C9E96_RS16685;product=type 1 fimbria D-mannose specific adhesin FimH;protein_id=WP_080204029.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	6683	9295	.	-	.	ID=gene-C9E96_RS16690;Name=C9E96_RS16690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16690;old_locus_tag=C9E96_17110
NZ_PYJX01000174.1	Protein Homology	CDS	6683	9295	.	-	0	ID=cds-WP_080204030.1;Parent=gene-C9E96_RS16690;Dbxref=GenBank:WP_080204030.1;Name=WP_080204030.1;Ontology_term=GO:0009297,GO:0005515,GO:0015473,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA,fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459541.1;locus_tag=C9E96_RS16690;product=fimbrial biogenesis usher protein;protein_id=WP_080204030.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	9326	10018	.	-	.	ID=gene-C9E96_RS16695;Name=fimC;gbkey=Gene;gene=fimC;gene_biotype=protein_coding;locus_tag=C9E96_RS16695;old_locus_tag=C9E96_17115
NZ_PYJX01000174.1	Protein Homology	CDS	9326	10018	.	-	0	ID=cds-WP_080204033.1;Parent=gene-C9E96_RS16695;Dbxref=GenBank:WP_080204033.1;Name=WP_080204033.1;gbkey=CDS;gene=fimC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459540.1;locus_tag=C9E96_RS16695;product=type 1 fimbria chaperone FimC;protein_id=WP_080204033.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	10062	10595	.	-	.	ID=gene-C9E96_RS16700;Name=fimI;gbkey=Gene;gene=fimI;gene_biotype=protein_coding;locus_tag=C9E96_RS16700;old_locus_tag=C9E96_17120
NZ_PYJX01000174.1	Protein Homology	CDS	10062	10595	.	-	0	ID=cds-WP_000619618.1;Parent=gene-C9E96_RS16700;Dbxref=GenBank:WP_000619618.1;Name=WP_000619618.1;gbkey=CDS;gene=fimI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459539.1;locus_tag=C9E96_RS16700;product=type 1 fimbrial protein subunit FimI;protein_id=WP_000619618.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	10670	11227	.	-	.	ID=gene-C9E96_RS16705;Name=fimA;gbkey=Gene;gene=fimA;gene_biotype=protein_coding;locus_tag=C9E96_RS16705;old_locus_tag=C9E96_17125
NZ_PYJX01000174.1	Protein Homology	CDS	10670	11227	.	-	0	ID=cds-WP_000681031.1;Parent=gene-C9E96_RS16705;Dbxref=GenBank:WP_000681031.1;Name=WP_000681031.1;gbkey=CDS;gene=fimA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459538.3;locus_tag=C9E96_RS16705;product=type 1 fimbrial protein subunit FimA;protein_id=WP_000681031.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	11774	12640	.	+	.	ID=gene-C9E96_RS16715;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=C9E96_RS16715;old_locus_tag=C9E96_17135
NZ_PYJX01000174.1	Protein Homology	CDS	11774	12640	.	+	0	ID=cds-WP_135494417.1;Parent=gene-C9E96_RS16715;Dbxref=GenBank:WP_135494417.1;Name=WP_135494417.1;Ontology_term=GO:0004488;gbkey=CDS;gene=folD;go_function=methylenetetrahydrofolate dehydrogenase (NADP+) activity|0004488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459537.1;locus_tag=C9E96_RS16715;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD;protein_id=WP_135494417.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	12642	12854	.	+	.	ID=gene-C9E96_RS16720;Name=ybcJ;gbkey=Gene;gene=ybcJ;gene_biotype=protein_coding;locus_tag=C9E96_RS16720;old_locus_tag=C9E96_17140
NZ_PYJX01000174.1	Protein Homology	CDS	12642	12854	.	+	0	ID=cds-WP_135494419.1;Parent=gene-C9E96_RS16720;Dbxref=GenBank:WP_135494419.1;Name=WP_135494419.1;gbkey=CDS;gene=ybcJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459536.1;locus_tag=C9E96_RS16720;product=ribosome-associated protein YbcJ;protein_id=WP_135494419.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	12981	13526	.	+	.	ID=gene-C9E96_RS16725;Name=C9E96_RS16725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16725;old_locus_tag=C9E96_17145
NZ_PYJX01000174.1	Protein Homology	CDS	12981	13526	.	+	0	ID=cds-WP_001143571.1;Parent=gene-C9E96_RS16725;Dbxref=GenBank:WP_001143571.1;Name=WP_001143571.1;Ontology_term=GO:0016787,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459535.1;locus_tag=C9E96_RS16725;product=metal-dependent hydrolase;protein_id=WP_001143571.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	13519	13956	.	+	.	ID=gene-C9E96_RS16730;Name=C9E96_RS16730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16730;old_locus_tag=C9E96_17150
NZ_PYJX01000174.1	Protein Homology	CDS	13519	13956	.	+	0	ID=cds-WP_001038580.1;Parent=gene-C9E96_RS16730;Dbxref=GenBank:WP_001038580.1;Name=WP_001038580.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459534.1;locus_tag=C9E96_RS16730;product=STM0539 family protein;protein_id=WP_001038580.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	13953	14777	.	+	.	ID=gene-C9E96_RS16735;Name=C9E96_RS16735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16735;old_locus_tag=C9E96_17155
NZ_PYJX01000174.1	Protein Homology	CDS	13953	14777	.	+	0	ID=cds-WP_080204031.1;Parent=gene-C9E96_RS16735;Dbxref=GenBank:WP_080204031.1;Name=WP_080204031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459533.1;locus_tag=C9E96_RS16735;product=DUF2145 domain-containing protein;protein_id=WP_080204031.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	14821	16206	.	-	.	ID=gene-C9E96_RS16740;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=C9E96_RS16740;old_locus_tag=C9E96_17160
NZ_PYJX01000174.1	Protein Homology	CDS	14821	16206	.	-	0	ID=cds-WP_000912376.1;Parent=gene-C9E96_RS16740;Dbxref=GenBank:WP_000912376.1;Name=WP_000912376.1;Ontology_term=GO:0006423,GO:0004817,GO:0005524,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA,ATP binding|0005524||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125243.1;locus_tag=C9E96_RS16740;product=cysteine--tRNA ligase;protein_id=WP_000912376.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	16379	16873	.	+	.	ID=gene-C9E96_RS16745;Name=ppiB;gbkey=Gene;gene=ppiB;gene_biotype=protein_coding;locus_tag=C9E96_RS16745;old_locus_tag=C9E96_17165
NZ_PYJX01000174.1	Protein Homology	CDS	16379	16873	.	+	0	ID=cds-WP_000255991.1;Parent=gene-C9E96_RS16745;Dbxref=GenBank:WP_000255991.1;Name=WP_000255991.1;gbkey=CDS;gene=ppiB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465360.1;locus_tag=C9E96_RS16745;product=peptidylprolyl isomerase B;protein_id=WP_000255991.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	16876	17598	.	+	.	ID=gene-C9E96_RS16750;Name=lpxH;gbkey=Gene;gene=lpxH;gene_biotype=protein_coding;locus_tag=C9E96_RS16750;old_locus_tag=C9E96_17170
NZ_PYJX01000174.1	Protein Homology	CDS	16876	17598	.	+	0	ID=cds-WP_135369841.1;Parent=gene-C9E96_RS16750;Dbxref=GenBank:WP_135369841.1;Name=WP_135369841.1;Ontology_term=GO:0009245,GO:0008758,GO:0016462,GO:0005737;gbkey=CDS;gene=lpxH;go_component=cytoplasm|0005737||IEA;go_function=UDP-2%2C3-diacylglucosamine hydrolase activity|0008758||IEA,pyrophosphatase activity|0016462||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459530.1;locus_tag=C9E96_RS16750;product=UDP-2%2C3-diacylglucosamine diphosphatase;protein_id=WP_135369841.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	17716	18225	.	+	.	ID=gene-C9E96_RS16755;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=C9E96_RS16755;old_locus_tag=C9E96_17180
NZ_PYJX01000174.1	Protein Homology	CDS	17716	18225	.	+	0	ID=cds-WP_000098736.1;Parent=gene-C9E96_RS16755;Dbxref=GenBank:WP_000098736.1;Name=WP_000098736.1;Ontology_term=GO:0006189,GO:0009152,GO:0004638,GO:0009320;gbkey=CDS;gene=purE;go_component=phosphoribosylaminoimidazole carboxylase complex|0009320||IEA;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459529.1;locus_tag=C9E96_RS16755;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=WP_000098736.1;transl_table=11
NZ_PYJX01000174.1	RefSeq	gene	18222	18621	.	+	.	ID=gene-C9E96_RS16760;Name=C9E96_RS16760;end_range=18621,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS16760;old_locus_tag=C9E96_17185;partial=true
NZ_PYJX01000174.1	Protein Homology	CDS	18222	18621	.	+	0	ID=cds-WP_135494421.1;Parent=gene-C9E96_RS16760;Dbxref=GenBank:WP_135494421.1;Name=WP_135494421.1;end_range=18621,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459528.1;locus_tag=C9E96_RS16760;partial=true;product=ATP-grasp domain-containing protein;protein_id=WP_135494421.1;transl_table=11
##sequence-region NZ_PYJX01000152.1 1 18546
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000152.1	RefSeq	region	1	18546	.	+	.	ID=NZ_PYJX01000152.1:1..18546;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000152.1	RefSeq	gene	1	1101	.	+	.	ID=gene-C9E96_RS13420;Name=C9E96_RS13420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS13420;old_locus_tag=C9E96_13735;partial=true;start_range=.,1
NZ_PYJX01000152.1	Protein Homology	CDS	1	1101	.	+	0	ID=cds-WP_245306430.1;Parent=gene-C9E96_RS13420;Dbxref=GenBank:WP_245306430.1;Name=WP_245306430.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459217.1;locus_tag=C9E96_RS13420;partial=true;product=MFS transporter;protein_id=WP_245306430.1;start_range=.,1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	1138	1962	.	-	.	ID=gene-C9E96_RS13425;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=C9E96_RS13425;old_locus_tag=C9E96_13740
NZ_PYJX01000152.1	Protein Homology	CDS	1138	1962	.	-	0	ID=cds-WP_001186673.1;Parent=gene-C9E96_RS13425;Dbxref=GenBank:WP_001186673.1;Name=WP_001186673.1;Ontology_term=GO:0009089,GO:0008666;gbkey=CDS;gene=dapD;go_function=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase activity|0008666||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132123.1;locus_tag=C9E96_RS13425;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_001186673.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	1992	4664	.	-	.	ID=gene-C9E96_RS13430;Name=glnD;gbkey=Gene;gene=glnD;gene_biotype=protein_coding;locus_tag=C9E96_RS13430;old_locus_tag=C9E96_13745
NZ_PYJX01000152.1	Protein Homology	CDS	1992	4664	.	-	0	ID=cds-WP_001094523.1;Parent=gene-C9E96_RS13430;Dbxref=GenBank:WP_001094523.1;Name=WP_001094523.1;Ontology_term=GO:0008152,GO:0016779;gbkey=CDS;gene=glnD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459219.1;locus_tag=C9E96_RS13430;product=bifunctional uridylyltransferase/uridylyl-removing protein GlnD;protein_id=WP_001094523.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	4902	5696	.	-	.	ID=gene-C9E96_RS13435;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=C9E96_RS13435;old_locus_tag=C9E96_13755
NZ_PYJX01000152.1	Protein Homology	CDS	4902	5696	.	-	0	ID=cds-WP_001018214.1;Parent=gene-C9E96_RS13435;Dbxref=GenBank:WP_001018214.1;Name=WP_001018214.1;Ontology_term=GO:0006508,GO:0070006;gbkey=CDS;gene=map;go_function=metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459220.1;locus_tag=C9E96_RS13435;product=type I methionyl aminopeptidase;protein_id=WP_001018214.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	6147	6872	.	+	.	ID=gene-C9E96_RS13440;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=C9E96_RS13440;old_locus_tag=C9E96_13760
NZ_PYJX01000152.1	Protein Homology	CDS	6147	6872	.	+	0	ID=cds-WP_000246886.1;Parent=gene-C9E96_RS13440;Dbxref=GenBank:WP_000246886.1;Name=WP_000246886.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsB;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132117.1;locus_tag=C9E96_RS13440;product=30S ribosomal protein S2;protein_id=WP_000246886.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	7130	7981	.	+	.	ID=gene-C9E96_RS13445;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=C9E96_RS13445;old_locus_tag=C9E96_13770
NZ_PYJX01000152.1	Protein Homology	CDS	7130	7981	.	+	0	ID=cds-WP_000808106.1;Parent=gene-C9E96_RS13445;Dbxref=GenBank:WP_000808106.1;Name=WP_000808106.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132116.1;locus_tag=C9E96_RS13445;product=translation elongation factor Ts;protein_id=WP_000808106.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	8126	8851	.	+	.	ID=gene-C9E96_RS13450;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=C9E96_RS13450;old_locus_tag=C9E96_13775
NZ_PYJX01000152.1	Protein Homology	CDS	8126	8851	.	+	0	ID=cds-WP_000224567.1;Parent=gene-C9E96_RS13450;Dbxref=GenBank:WP_000224567.1;Name=WP_000224567.1;Ontology_term=GO:0006221,GO:0015949,GO:0033862,GO:0005737;gbkey=CDS;gene=pyrH;go_component=cytoplasm|0005737||IEA;go_function=UMP kinase activity|0033862||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000224576.1;locus_tag=C9E96_RS13450;product=UMP kinase;protein_id=WP_000224567.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	8998	9555	.	+	.	ID=gene-C9E96_RS13455;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=C9E96_RS13455;old_locus_tag=C9E96_13780
NZ_PYJX01000152.1	Protein Homology	CDS	8998	9555	.	+	0	ID=cds-WP_000622423.1;Parent=gene-C9E96_RS13455;Dbxref=GenBank:WP_000622423.1;Name=WP_000622423.1;Ontology_term=GO:0006412,GO:0008135;gbkey=CDS;gene=frr;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000622421.1;locus_tag=C9E96_RS13455;product=ribosome recycling factor;protein_id=WP_000622423.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	9697	10893	.	+	.	ID=gene-C9E96_RS13460;Name=ispC;gbkey=Gene;gene=ispC;gene_biotype=protein_coding;locus_tag=C9E96_RS13460;old_locus_tag=C9E96_13785
NZ_PYJX01000152.1	Protein Homology	CDS	9697	10893	.	+	0	ID=cds-WP_080203738.1;Parent=gene-C9E96_RS13460;Dbxref=GenBank:WP_080203738.1;Name=WP_080203738.1;Ontology_term=GO:0008299,GO:0005515,GO:0030604,GO:0046872,GO:0070402;gbkey=CDS;gene=ispC;go_function=protein binding|0005515||IEA,1-deoxy-D-xylulose-5-phosphate reductoisomerase activity|0030604||IEA,metal ion binding|0046872||IEA,NADPH binding|0070402||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459225.1;locus_tag=C9E96_RS13460;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=WP_080203738.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	11206	11964	.	+	.	ID=gene-C9E96_RS13465;Name=ispU;gbkey=Gene;gene=ispU;gene_biotype=protein_coding;gene_synonym=uppS;locus_tag=C9E96_RS13465;old_locus_tag=C9E96_13795
NZ_PYJX01000152.1	Protein Homology	CDS	11206	11964	.	+	0	ID=cds-WP_000947413.1;Parent=gene-C9E96_RS13465;Dbxref=GenBank:WP_000947413.1;Name=WP_000947413.1;Ontology_term=GO:0043164,GO:0004659,GO:0008834;gbkey=CDS;gene=ispU;go_function=prenyltransferase activity|0004659||IEA,ditrans%2Cpolycis-undecaprenyl-diphosphate synthase [(2E%2C6E)-farnesyl-diphosphate specific] activity|0008834||IEA;go_process=Gram-negative-bacterium-type cell wall biogenesis|0043164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459226.1;locus_tag=C9E96_RS13465;product=(2E%2C6E)-farnesyl-diphosphate-specific ditrans%2Cpolycis-undecaprenyl-diphosphate synthase;protein_id=WP_000947413.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	11977	12834	.	+	.	ID=gene-C9E96_RS13470;Name=cdsA;gbkey=Gene;gene=cdsA;gene_biotype=protein_coding;locus_tag=C9E96_RS13470;old_locus_tag=C9E96_13800
NZ_PYJX01000152.1	Protein Homology	CDS	11977	12834	.	+	0	ID=cds-WP_000922422.1;Parent=gene-C9E96_RS13470;Dbxref=GenBank:WP_000922422.1;Name=WP_000922422.1;Ontology_term=GO:0016772;gbkey=CDS;gene=cdsA;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459227.1;locus_tag=C9E96_RS13470;product=phosphatidate cytidylyltransferase;protein_id=WP_000922422.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	12846	14198	.	+	.	ID=gene-C9E96_RS13475;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=C9E96_RS13475;old_locus_tag=C9E96_13805
NZ_PYJX01000152.1	Protein Homology	CDS	12846	14198	.	+	0	ID=cds-WP_000949017.1;Parent=gene-C9E96_RS13475;Dbxref=GenBank:WP_000949017.1;Name=WP_000949017.1;Ontology_term=GO:0006508,GO:0004222,GO:0005515,GO:0016020;gbkey=CDS;gene=rseP;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132106.1;locus_tag=C9E96_RS13475;product=sigma E protease regulator RseP;protein_id=WP_000949017.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	14230	16641	.	+	.	ID=gene-C9E96_RS13480;Name=bamA;gbkey=Gene;gene=bamA;gene_biotype=protein_coding;locus_tag=C9E96_RS13480;old_locus_tag=C9E96_13810
NZ_PYJX01000152.1	Protein Homology	CDS	14230	16641	.	+	0	ID=cds-WP_001240923.1;Parent=gene-C9E96_RS13480;Dbxref=GenBank:WP_001240923.1;Name=WP_001240923.1;Ontology_term=GO:0071709,GO:0009279;gbkey=CDS;gene=bamA;go_component=cell outer membrane|0009279||IEA;go_process=membrane assembly|0071709||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459229.1;locus_tag=C9E96_RS13480;product=outer membrane protein assembly factor BamA;protein_id=WP_001240923.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	16765	17250	.	+	.	ID=gene-C9E96_RS13485;Name=skp;gbkey=Gene;gene=skp;gene_biotype=protein_coding;gene_synonym=hlpA,ompH;locus_tag=C9E96_RS13485;old_locus_tag=C9E96_13815
NZ_PYJX01000152.1	Protein Homology	CDS	16765	17250	.	+	0	ID=cds-WP_000758966.1;Parent=gene-C9E96_RS13485;Dbxref=GenBank:WP_000758966.1;Name=WP_000758966.1;gbkey=CDS;gene=skp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459230.1;locus_tag=C9E96_RS13485;product=molecular chaperone Skp;protein_id=WP_000758966.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	gene	17254	18279	.	+	.	ID=gene-C9E96_RS13490;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=C9E96_RS13490;old_locus_tag=C9E96_13820
NZ_PYJX01000152.1	Protein Homology	CDS	17254	18279	.	+	0	ID=cds-WP_001139265.1;Parent=gene-C9E96_RS13490;Dbxref=GenBank:WP_001139265.1;Name=WP_001139265.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;gene=lpxD;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132101.1;locus_tag=C9E96_RS13490;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_001139265.1;transl_table=11
NZ_PYJX01000152.1	RefSeq	pseudogene	18385	18483	.	+	.	ID=gene-C9E96_RS23965;Name=C9E96_RS23965;end_range=18483,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS23965;partial=true;pseudo=true
NZ_PYJX01000152.1	Protein Homology	CDS	18385	18483	.	+	0	ID=cds-C9E96_RS23965;Parent=gene-C9E96_RS23965;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=18483,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000210741.1;locus_tag=C9E96_RS23965;partial=true;product=3-hydroxyacyl-ACP dehydratase FabZ;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000215.1 1 18054
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000215.1	RefSeq	region	1	18054	.	+	.	ID=NZ_PYJX01000215.1:1..18054;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000215.1	RefSeq	gene	1	566	.	-	.	ID=gene-C9E96_RS21345;Name=C9E96_RS21345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21345;old_locus_tag=C9E96_21870;partial=true;start_range=.,1
NZ_PYJX01000215.1	Protein Homology	CDS	1	566	.	-	0	ID=cds-WP_210114531.1;Parent=gene-C9E96_RS21345;Dbxref=GenBank:WP_210114531.1;Name=WP_210114531.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460024.1;locus_tag=C9E96_RS21345;partial=true;product=prophage tail fiber N-terminal domain-containing protein;protein_id=WP_210114531.1;start_range=.,1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	620	862	.	-	.	ID=gene-C9E96_RS21350;Name=C9E96_RS21350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21350;old_locus_tag=C9E96_21875
NZ_PYJX01000215.1	Protein Homology	CDS	620	862	.	-	0	ID=cds-WP_000178826.1;Parent=gene-C9E96_RS21350;Dbxref=GenBank:WP_000178826.1;Name=WP_000178826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000178849.1;locus_tag=C9E96_RS21350;product=hypothetical protein;protein_id=WP_000178826.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	901	4263	.	-	.	ID=gene-C9E96_RS21355;Name=gpJ;gbkey=Gene;gene=gpJ;gene_biotype=protein_coding;locus_tag=C9E96_RS21355;old_locus_tag=C9E96_21880
NZ_PYJX01000215.1	Protein Homology	CDS	901	4263	.	-	0	ID=cds-WP_135369858.1;Parent=gene-C9E96_RS21355;Dbxref=GenBank:WP_135369858.1;Name=WP_135369858.1;gbkey=CDS;gene=gpJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461525.2;locus_tag=C9E96_RS21355;product=phage attachment tail tip protein J;protein_id=WP_135369858.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	4325	4972	.	-	.	ID=gene-C9E96_RS21360;Name=C9E96_RS21360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21360;old_locus_tag=C9E96_21885
NZ_PYJX01000215.1	Protein Homology	CDS	4325	4972	.	-	0	ID=cds-WP_023228907.1;Parent=gene-C9E96_RS21360;Dbxref=GenBank:WP_023228907.1;Name=WP_023228907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461526.1;locus_tag=C9E96_RS21360;product=tail assembly protein;protein_id=WP_023228907.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	4870	5607	.	-	.	ID=gene-C9E96_RS21365;Name=C9E96_RS21365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21365;old_locus_tag=C9E96_21890
NZ_PYJX01000215.1	Protein Homology	CDS	4870	5607	.	-	0	ID=cds-WP_000662740.1;Parent=gene-C9E96_RS21365;Dbxref=GenBank:WP_000662740.1;Name=WP_000662740.1;Ontology_term=GO:0006508,GO:0008234,GO:0008235,GO:0008270;gbkey=CDS;go_function=cysteine-type peptidase activity|0008234||IEA,metalloexopeptidase activity|0008235||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000662739.1;locus_tag=C9E96_RS21365;product=C40 family peptidase;protein_id=WP_000662740.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	5614	6312	.	-	.	ID=gene-C9E96_RS21370;Name=C9E96_RS21370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21370;old_locus_tag=C9E96_21895
NZ_PYJX01000215.1	Protein Homology	CDS	5614	6312	.	-	0	ID=cds-WP_001152689.1;Parent=gene-C9E96_RS21370;Dbxref=GenBank:WP_001152689.1;Name=WP_001152689.1;Ontology_term=GO:0046718,GO:0051536,GO:0030430;gbkey=CDS;go_component=host cell cytoplasm|0030430||IEA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=symbiont entry into host cell|0046718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461528.1;locus_tag=C9E96_RS21370;product=phage minor tail protein L;protein_id=WP_001152689.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	6322	6651	.	-	.	ID=gene-C9E96_RS21375;Name=C9E96_RS21375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21375;old_locus_tag=C9E96_21900
NZ_PYJX01000215.1	Protein Homology	CDS	6322	6651	.	-	0	ID=cds-WP_000447369.1;Parent=gene-C9E96_RS21375;Dbxref=GenBank:WP_000447369.1;Name=WP_000447369.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461529.1;locus_tag=C9E96_RS21375;product=phage tail protein;protein_id=WP_000447369.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	6654	9695	.	-	.	ID=gene-C9E96_RS21380;Name=C9E96_RS21380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21380;old_locus_tag=C9E96_21905
NZ_PYJX01000215.1	Protein Homology	CDS	6654	9695	.	-	0	ID=cds-WP_135494598.1;Parent=gene-C9E96_RS21380;Dbxref=GenBank:WP_135494598.1;Name=WP_135494598.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006669503.1;locus_tag=C9E96_RS21380;product=phage tail tape measure protein;protein_id=WP_135494598.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	9667	10005	.	-	.	ID=gene-C9E96_RS21385;Name=C9E96_RS21385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21385;old_locus_tag=C9E96_21910
NZ_PYJX01000215.1	Protein Homology	CDS	9667	10005	.	-	0	ID=cds-WP_010989052.1;Parent=gene-C9E96_RS21385;Dbxref=GenBank:WP_010989052.1;Name=WP_010989052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461531.1;locus_tag=C9E96_RS21385;product=phage tail assembly protein T;protein_id=WP_010989052.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	10002	10397	.	-	.	ID=gene-C9E96_RS21390;Name=gpG;gbkey=Gene;gene=gpG;gene_biotype=protein_coding;locus_tag=C9E96_RS21390;old_locus_tag=C9E96_21915
NZ_PYJX01000215.1	Protein Homology	CDS	10002	10397	.	-	0	ID=cds-WP_000479607.1;Parent=gene-C9E96_RS21390;Dbxref=GenBank:WP_000479607.1;Name=WP_000479607.1;gbkey=CDS;gene=gpG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461532.1;locus_tag=C9E96_RS21390;product=phage tail assembly chaperone G;protein_id=WP_000479607.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	10448	11194	.	-	.	ID=gene-C9E96_RS21395;Name=C9E96_RS21395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21395;old_locus_tag=C9E96_21920
NZ_PYJX01000215.1	Protein Homology	CDS	10448	11194	.	-	0	ID=cds-WP_000971954.1;Parent=gene-C9E96_RS21395;Dbxref=GenBank:WP_000971954.1;Name=WP_000971954.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461533.1;locus_tag=C9E96_RS21395;product=phage tail tube protein;protein_id=WP_000971954.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	11202	11603	.	-	.	ID=gene-C9E96_RS21400;Name=C9E96_RS21400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21400;old_locus_tag=C9E96_21925
NZ_PYJX01000215.1	Protein Homology	CDS	11202	11603	.	-	0	ID=cds-WP_000033885.1;Parent=gene-C9E96_RS21400;Dbxref=GenBank:WP_000033885.1;Name=WP_000033885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461534.1;locus_tag=C9E96_RS21400;product=phage minor tail U family protein;protein_id=WP_000033885.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	11647	12225	.	-	.	ID=gene-C9E96_RS21405;Name=C9E96_RS21405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21405;old_locus_tag=C9E96_21930
NZ_PYJX01000215.1	Protein Homology	CDS	11647	12225	.	-	0	ID=cds-WP_001534814.1;Parent=gene-C9E96_RS21405;Dbxref=GenBank:WP_001534814.1;Name=WP_001534814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461536.1;locus_tag=C9E96_RS21405;product=phage tail protein;protein_id=WP_001534814.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	12212	12589	.	-	.	ID=gene-C9E96_RS21410;Name=C9E96_RS21410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21410;old_locus_tag=C9E96_21935
NZ_PYJX01000215.1	Protein Homology	CDS	12212	12589	.	-	0	ID=cds-WP_023251960.1;Parent=gene-C9E96_RS21410;Dbxref=GenBank:WP_023251960.1;Name=WP_023251960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000083295.1;locus_tag=C9E96_RS21410;product=head-tail joining protein;protein_id=WP_023251960.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	12600	12959	.	-	.	ID=gene-C9E96_RS21415;Name=C9E96_RS21415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21415;old_locus_tag=C9E96_21940
NZ_PYJX01000215.1	Protein Homology	CDS	12600	12959	.	-	0	ID=cds-WP_023251959.1;Parent=gene-C9E96_RS21415;Dbxref=GenBank:WP_023251959.1;Name=WP_023251959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461538.1;locus_tag=C9E96_RS21415;product=DNA-packaging protein FI;protein_id=WP_023251959.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	13017	14045	.	-	.	ID=gene-C9E96_RS21420;Name=C9E96_RS21420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21420;old_locus_tag=C9E96_21945
NZ_PYJX01000215.1	Protein Homology	CDS	13017	14045	.	-	0	ID=cds-WP_000522566.1;Parent=gene-C9E96_RS21420;Dbxref=GenBank:WP_000522566.1;Name=WP_000522566.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461539.1;locus_tag=C9E96_RS21420;product=major capsid protein;protein_id=WP_000522566.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	14100	14447	.	-	.	ID=gene-C9E96_RS21425;Name=C9E96_RS21425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21425;old_locus_tag=C9E96_21950
NZ_PYJX01000215.1	Protein Homology	CDS	14100	14447	.	-	0	ID=cds-WP_135369857.1;Parent=gene-C9E96_RS21425;Dbxref=GenBank:WP_135369857.1;Name=WP_135369857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461540.1;locus_tag=C9E96_RS21425;product=head decoration protein;protein_id=WP_135369857.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	14460	15956	.	-	.	ID=gene-C9E96_RS21430;Name=C9E96_RS21430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21430;old_locus_tag=C9E96_21955
NZ_PYJX01000215.1	Protein Homology	CDS	14460	15956	.	-	0	ID=cds-WP_023251958.1;Parent=gene-C9E96_RS21430;Dbxref=GenBank:WP_023251958.1;Name=WP_023251958.1;Ontology_term=GO:0006508,GO:0008233,GO:0008236;gbkey=CDS;go_function=peptidase activity|0008233||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461541.1;locus_tag=C9E96_RS21430;product=S49 family peptidase;protein_id=WP_023251958.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	15946	17526	.	-	.	ID=gene-C9E96_RS21435;Name=C9E96_RS21435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21435;old_locus_tag=C9E96_21960
NZ_PYJX01000215.1	Protein Homology	CDS	15946	17526	.	-	0	ID=cds-WP_000831821.1;Parent=gene-C9E96_RS21435;Dbxref=GenBank:WP_000831821.1;Name=WP_000831821.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461542.1;locus_tag=C9E96_RS21435;product=phage portal protein;protein_id=WP_000831821.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	17523	17726	.	-	.	ID=gene-C9E96_RS21440;Name=C9E96_RS21440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21440;old_locus_tag=C9E96_21965
NZ_PYJX01000215.1	Protein Homology	CDS	17523	17726	.	-	0	ID=cds-WP_000201415.1;Parent=gene-C9E96_RS21440;Dbxref=GenBank:WP_000201415.1;Name=WP_000201415.1;Ontology_term=GO:0019058;gbkey=CDS;go_process=viral life cycle|0019058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461543.1;locus_tag=C9E96_RS21440;product=phage head-tail joining protein;protein_id=WP_000201415.1;transl_table=11
NZ_PYJX01000215.1	RefSeq	gene	17710	18054	.	-	.	ID=gene-C9E96_RS21445;Name=C9E96_RS21445;end_range=18054,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS21445;old_locus_tag=C9E96_21970;partial=true
NZ_PYJX01000215.1	Protein Homology	CDS	17710	18054	.	-	0	ID=cds-WP_245306441.1;Parent=gene-C9E96_RS21445;Dbxref=GenBank:WP_245306441.1;Name=WP_245306441.1;Ontology_term=GO:0004519;end_range=18054,.;gbkey=CDS;go_function=endonuclease activity|0004519||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001026811.1;locus_tag=C9E96_RS21445;partial=true;product=terminase gpA endonuclease subunit;protein_id=WP_245306441.1;transl_table=11
##sequence-region NZ_PYJX01000044.1 1 17969
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000044.1	RefSeq	region	1	17969	.	+	.	ID=NZ_PYJX01000044.1:1..17969;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000044.1	RefSeq	pseudogene	212	640	.	+	.	ID=gene-C9E96_RS03320;Name=C9E96_RS03320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS03320;old_locus_tag=C9E96_03375;partial=true;pseudo=true;start_range=.,212
NZ_PYJX01000044.1	Protein Homology	CDS	212	640	.	+	0	ID=cds-C9E96_RS03320;Parent=gene-C9E96_RS03320;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0032196,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611947.1;locus_tag=C9E96_RS03320;partial=true;product=transposase;pseudo=true;start_range=.,212;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	759	1409	.	-	.	ID=gene-C9E96_RS03325;Name=C9E96_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03325;old_locus_tag=C9E96_03380
NZ_PYJX01000044.1	Protein Homology	CDS	759	1409	.	-	0	ID=cds-WP_023993641.1;Parent=gene-C9E96_RS03325;Dbxref=GenBank:WP_023993641.1;Name=WP_023993641.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004247421.1;locus_tag=C9E96_RS03325;product=GntR family transcriptional regulator;protein_id=WP_023993641.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	1495	2697	.	+	.	ID=gene-C9E96_RS03330;Name=C9E96_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03330;old_locus_tag=C9E96_03385
NZ_PYJX01000044.1	Protein Homology	CDS	1495	2697	.	+	0	ID=cds-WP_080204126.1;Parent=gene-C9E96_RS03330;Dbxref=GenBank:WP_080204126.1;Name=WP_080204126.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017628845.1;locus_tag=C9E96_RS03330;product=MFS transporter;protein_id=WP_080204126.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	pseudogene	2738	3344	.	+	.	ID=gene-C9E96_RS03335;Name=C9E96_RS03335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS03335;old_locus_tag=C9E96_03390;pseudo=true
NZ_PYJX01000044.1	Protein Homology	CDS	2738	3344	.	+	0	ID=cds-C9E96_RS03335;Parent=gene-C9E96_RS03335;Note=frameshifted;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005227035.1;locus_tag=C9E96_RS03335;product=cysteine hydrolase family protein;pseudo=true;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	3510	3797	.	+	.	ID=gene-C9E96_RS03340;Name=C9E96_RS03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03340;old_locus_tag=C9E96_03395
NZ_PYJX01000044.1	Protein Homology	CDS	3510	3797	.	+	0	ID=cds-WP_000965886.1;Parent=gene-C9E96_RS03340;Dbxref=GenBank:WP_000965886.1;Name=WP_000965886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462553.1;locus_tag=C9E96_RS03340;product=DUF1778 domain-containing protein;protein_id=WP_000965886.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	3785	4270	.	+	.	ID=gene-C9E96_RS03345;Name=C9E96_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03345;old_locus_tag=C9E96_03400
NZ_PYJX01000044.1	Protein Homology	CDS	3785	4270	.	+	0	ID=cds-WP_080204125.1;Parent=gene-C9E96_RS03345;Dbxref=GenBank:WP_080204125.1;Name=WP_080204125.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462552.1;locus_tag=C9E96_RS03345;product=GNAT family N-acetyltransferase;protein_id=WP_080204125.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	4641	5180	.	-	.	ID=gene-C9E96_RS03350;Name=cueP;gbkey=Gene;gene=cueP;gene_biotype=protein_coding;locus_tag=C9E96_RS03350;old_locus_tag=C9E96_03405
NZ_PYJX01000044.1	Protein Homology	CDS	4641	5180	.	-	0	ID=cds-WP_000047149.1;Parent=gene-C9E96_RS03350;Dbxref=GenBank:WP_000047149.1;Name=WP_000047149.1;gbkey=CDS;gene=cueP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462551.1;locus_tag=C9E96_RS03350;product=copper-binding periplasmic metallochaperone CueP;protein_id=WP_000047149.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	5363	5575	.	-	.	ID=gene-C9E96_RS03355;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=C9E96_RS03355;old_locus_tag=C9E96_03410
NZ_PYJX01000044.1	Protein Homology	CDS	5363	5575	.	-	0	ID=cds-WP_000014594.1;Parent=gene-C9E96_RS03355;Dbxref=GenBank:WP_000014594.1;Name=WP_000014594.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312468.1;locus_tag=C9E96_RS03355;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_000014594.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	5863	6153	.	-	.	ID=gene-C9E96_RS03360;Name=C9E96_RS03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03360;old_locus_tag=C9E96_03415
NZ_PYJX01000044.1	Protein Homology	CDS	5863	6153	.	-	0	ID=cds-WP_000455790.1;Parent=gene-C9E96_RS03360;Dbxref=GenBank:WP_000455790.1;Name=WP_000455790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462549.1;locus_tag=C9E96_RS03360;product=HTH-type transcriptional regulator;protein_id=WP_000455790.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	6592	7302	.	+	.	ID=gene-C9E96_RS03365;Name=C9E96_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03365;old_locus_tag=C9E96_03420
NZ_PYJX01000044.1	Protein Homology	CDS	6592	7302	.	+	0	ID=cds-WP_000190524.1;Parent=gene-C9E96_RS03365;Dbxref=GenBank:WP_000190524.1;Name=WP_000190524.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462548.1;locus_tag=C9E96_RS03365;product=DUF3053 domain-containing protein;protein_id=WP_000190524.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	7352	8326	.	-	.	ID=gene-C9E96_RS03370;Name=ghrB;gbkey=Gene;gene=ghrB;gene_biotype=protein_coding;locus_tag=C9E96_RS03370;old_locus_tag=C9E96_03425
NZ_PYJX01000044.1	Protein Homology	CDS	7352	8326	.	-	0	ID=cds-WP_080068147.1;Parent=gene-C9E96_RS03370;Dbxref=GenBank:WP_080068147.1;Name=WP_080068147.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=ghrB;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462547.1;locus_tag=C9E96_RS03370;product=glyoxylate/hydroxypyruvate reductase GhrB;protein_id=WP_080068147.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	8545	9207	.	-	.	ID=gene-C9E96_RS03375;Name=C9E96_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03375;old_locus_tag=C9E96_03430
NZ_PYJX01000044.1	Protein Homology	CDS	8545	9207	.	-	0	ID=cds-WP_000747548.1;Parent=gene-C9E96_RS03375;Dbxref=GenBank:WP_000747548.1;Name=WP_000747548.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462546.1;locus_tag=C9E96_RS03375;product=OmpA family lipoprotein;protein_id=WP_000747548.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	9359	11692	.	+	.	ID=gene-C9E96_RS03380;Name=C9E96_RS03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03380;old_locus_tag=C9E96_03435
NZ_PYJX01000044.1	Protein Homology	CDS	9359	11692	.	+	0	ID=cds-WP_135369884.1;Parent=gene-C9E96_RS03380;Dbxref=GenBank:WP_135369884.1;Name=WP_135369884.1;Ontology_term=GO:0016491,GO:0043546;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462545.1;locus_tag=C9E96_RS03380;product=molybdopterin guanine dinucleotide-containing S/N-oxide reductase;protein_id=WP_135369884.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	11661	12101	.	-	.	ID=gene-C9E96_RS03385;Name=C9E96_RS03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03385;old_locus_tag=C9E96_03440
NZ_PYJX01000044.1	Protein Homology	CDS	11661	12101	.	-	0	ID=cds-WP_000619902.1;Parent=gene-C9E96_RS03385;Dbxref=GenBank:WP_000619902.1;Name=WP_000619902.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462544.1;locus_tag=C9E96_RS03385;product=N-acetyltransferase;protein_id=WP_000619902.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	12079	12660	.	-	.	ID=gene-C9E96_RS03390;Name=tag;gbkey=Gene;gene=tag;gene_biotype=protein_coding;locus_tag=C9E96_RS03390;old_locus_tag=C9E96_03445
NZ_PYJX01000044.1	Protein Homology	CDS	12079	12660	.	-	0	ID=cds-WP_115276190.1;Parent=gene-C9E96_RS03390;Dbxref=GenBank:WP_115276190.1;Name=WP_115276190.1;gbkey=CDS;gene=tag;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462543.1;locus_tag=C9E96_RS03390;product=DNA-3-methyladenine glycosylase I;protein_id=WP_115276190.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	12817	13521	.	+	.	ID=gene-C9E96_RS03395;Name=C9E96_RS03395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS03395;old_locus_tag=C9E96_03450
NZ_PYJX01000044.1	Protein Homology	CDS	12817	13521	.	+	0	ID=cds-WP_000637072.1;Parent=gene-C9E96_RS03395;Dbxref=GenBank:WP_000637072.1;Name=WP_000637072.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462542.1;locus_tag=C9E96_RS03395;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_000637072.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	14039	14563	.	+	.	ID=gene-C9E96_RS03400;Name=lpfA;gbkey=Gene;gene=lpfA;gene_biotype=protein_coding;locus_tag=C9E96_RS03400;old_locus_tag=C9E96_03455
NZ_PYJX01000044.1	Protein Homology	CDS	14039	14563	.	+	0	ID=cds-WP_207301664.1;Parent=gene-C9E96_RS03400;Dbxref=GenBank:WP_207301664.1;Name=WP_207301664.1;gbkey=CDS;gene=lpfA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519917.1;locus_tag=C9E96_RS03400;product=long polar fimbrial major subunit LpfA;protein_id=WP_207301664.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	14648	15346	.	+	.	ID=gene-C9E96_RS03405;Name=lpfB;gbkey=Gene;gene=lpfB;gene_biotype=protein_coding;locus_tag=C9E96_RS03405;old_locus_tag=C9E96_03460
NZ_PYJX01000044.1	Protein Homology	CDS	14648	15346	.	+	0	ID=cds-WP_001082125.1;Parent=gene-C9E96_RS03405;Dbxref=GenBank:WP_001082125.1;Name=WP_001082125.1;gbkey=CDS;gene=lpfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462540.1;locus_tag=C9E96_RS03405;product=long polar fimbrial chaperone LpfB;protein_id=WP_001082125.1;transl_table=11
NZ_PYJX01000044.1	RefSeq	gene	15369	17897	.	+	.	ID=gene-C9E96_RS03410;Name=lpfC;gbkey=Gene;gene=lpfC;gene_biotype=protein_coding;locus_tag=C9E96_RS03410;old_locus_tag=C9E96_03465
NZ_PYJX01000044.1	Protein Homology	CDS	15369	17897	.	+	0	ID=cds-WP_135493843.1;Parent=gene-C9E96_RS03410;Dbxref=GenBank:WP_135493843.1;Name=WP_135493843.1;gbkey=CDS;gene=lpfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462539.1;locus_tag=C9E96_RS03410;product=outer membrane usher protein LpfC;protein_id=WP_135493843.1;transl_table=11
##sequence-region NZ_PYJX01000024.1 1 17559
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000024.1	RefSeq	region	1	17559	.	+	.	ID=NZ_PYJX01000024.1:1..17559;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000024.1	RefSeq	gene	1	1518	.	-	.	ID=gene-C9E96_RS01375;Name=C9E96_RS01375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01375;old_locus_tag=C9E96_01405;partial=true;start_range=.,1
NZ_PYJX01000024.1	Protein Homology	CDS	1	1518	.	-	0	ID=cds-WP_135493755.1;Parent=gene-C9E96_RS01375;Dbxref=GenBank:WP_135493755.1;Name=WP_135493755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462511.1;locus_tag=C9E96_RS01375;partial=true;product=AsmA family protein;protein_id=WP_135493755.1;start_range=.,1;transl_table=11
NZ_PYJX01000024.1	RefSeq	gene	1628	2395	.	-	.	ID=gene-C9E96_RS01380;Name=pdeH;gbkey=Gene;gene=pdeH;gene_biotype=protein_coding;locus_tag=C9E96_RS01380;old_locus_tag=C9E96_01410
NZ_PYJX01000024.1	Protein Homology	CDS	1628	2395	.	-	0	ID=cds-WP_000595626.1;Parent=gene-C9E96_RS01380;Dbxref=GenBank:WP_000595626.1;Name=WP_000595626.1;gbkey=CDS;gene=pdeH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462512.1;locus_tag=C9E96_RS01380;product=cyclic-guanylate-specific phosphodiesterase;protein_id=WP_000595626.1;transl_table=11
NZ_PYJX01000024.1	RefSeq	gene	2624	3553	.	+	.	ID=gene-C9E96_RS01385;Name=C9E96_RS01385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS01385;old_locus_tag=C9E96_01415
NZ_PYJX01000024.1	Protein Homology	CDS	2624	3553	.	+	0	ID=cds-WP_135493757.1;Parent=gene-C9E96_RS01385;Dbxref=GenBank:WP_135493757.1;Name=WP_135493757.1;Ontology_term=GO:0005975,GO:0019200,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462513.1;locus_tag=C9E96_RS01385;product=sugar kinase;protein_id=WP_135493757.1;transl_table=11
NZ_PYJX01000024.1	RefSeq	pseudogene	3610	5094	.	-	.	ID=gene-C9E96_RS01390;Name=C9E96_RS01390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS01390;old_locus_tag=C9E96_01420;partial=true;pseudo=true;start_range=.,3610
NZ_PYJX01000024.1	Protein Homology	CDS	3610	5094	.	-	0	ID=cds-C9E96_RS01390;Parent=gene-C9E96_RS01390;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0008237,GO:0046872;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462514.1;locus_tag=C9E96_RS01390;partial=true;product=M16 family metallopeptidase;pseudo=true;start_range=.,3610;transl_table=11
NZ_PYJX01000024.1	RefSeq	gene	5314	6600	.	-	.	ID=gene-C9E96_RS01395;Name=dctA;gbkey=Gene;gene=dctA;gene_biotype=protein_coding;locus_tag=C9E96_RS01395;old_locus_tag=C9E96_01425
NZ_PYJX01000024.1	Protein Homology	CDS	5314	6600	.	-	0	ID=cds-WP_000858228.1;Parent=gene-C9E96_RS01395;Dbxref=GenBank:WP_000858228.1;Name=WP_000858228.1;gbkey=CDS;gene=dctA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462515.1;locus_tag=C9E96_RS01395;product=C4-dicarboxylate transporter DctC;protein_id=WP_000858228.1;transl_table=11
NZ_PYJX01000024.1	RefSeq	gene	6758	8764	.	-	.	ID=gene-C9E96_RS01400;Name=hmsP;gbkey=Gene;gene=hmsP;gene_biotype=protein_coding;locus_tag=C9E96_RS01400;old_locus_tag=C9E96_01430
NZ_PYJX01000024.1	Protein Homology	CDS	6758	8764	.	-	0	ID=cds-WP_135493759.1;Parent=gene-C9E96_RS01400;Dbxref=GenBank:WP_135493759.1;Name=WP_135493759.1;Ontology_term=GO:0007165;gbkey=CDS;gene=hmsP;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001266355.1;locus_tag=C9E96_RS01400;product=biofilm formation regulator HmsP;protein_id=WP_135493759.1;transl_table=11
NZ_PYJX01000024.1	RefSeq	gene	8938	12480	.	-	.	ID=gene-C9E96_RS01410;Name=bcsC;gbkey=Gene;gene=bcsC;gene_biotype=protein_coding;locus_tag=C9E96_RS01410;old_locus_tag=C9E96_01440
NZ_PYJX01000024.1	Protein Homology	CDS	8938	12480	.	-	0	ID=cds-WP_080170011.1;Parent=gene-C9E96_RS01410;Dbxref=GenBank:WP_080170011.1;Name=WP_080170011.1;Ontology_term=GO:0030244,GO:0005515,GO:0019867;gbkey=CDS;gene=bcsC;go_component=outer membrane|0019867||IEA;go_function=protein binding|0005515||IEA;go_process=cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462517.1;locus_tag=C9E96_RS01410;product=cellulose synthase complex outer membrane protein BcsC;protein_id=WP_080170011.1;transl_table=11
NZ_PYJX01000024.1	RefSeq	gene	12462	13571	.	-	.	ID=gene-C9E96_RS01415;Name=bcsZ;gbkey=Gene;gene=bcsZ;gene_biotype=protein_coding;locus_tag=C9E96_RS01415;old_locus_tag=C9E96_01445
NZ_PYJX01000024.1	Protein Homology	CDS	12462	13571	.	-	0	ID=cds-WP_000988802.1;Parent=gene-C9E96_RS01415;Dbxref=GenBank:WP_000988802.1;Name=WP_000988802.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=bcsZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462518.1;locus_tag=C9E96_RS01415;product=cellulose synthase complex periplasmic endoglucanase BcsZ;protein_id=WP_000988802.1;transl_table=11
NZ_PYJX01000024.1	RefSeq	gene	13575	15875	.	-	.	ID=gene-C9E96_RS01420;Name=bcsB;gbkey=Gene;gene=bcsB;gene_biotype=protein_coding;locus_tag=C9E96_RS01420;old_locus_tag=C9E96_01450
NZ_PYJX01000024.1	Protein Homology	CDS	13575	15875	.	-	0	ID=cds-WP_000823807.1;Parent=gene-C9E96_RS01420;Dbxref=GenBank:WP_000823807.1;Name=WP_000823807.1;gbkey=CDS;gene=bcsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462519.1;locus_tag=C9E96_RS01420;product=cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB;protein_id=WP_000823807.1;transl_table=11
NZ_PYJX01000024.1	RefSeq	gene	15886	17559	.	-	.	ID=gene-C9E96_RS01425;Name=bcsA;end_range=17559,.;gbkey=Gene;gene=bcsA;gene_biotype=protein_coding;locus_tag=C9E96_RS01425;old_locus_tag=C9E96_01455;partial=true
NZ_PYJX01000024.1	Protein Homology	CDS	15886	17559	.	-	0	ID=cds-WP_135493761.1;Parent=gene-C9E96_RS01425;Dbxref=GenBank:WP_135493761.1;Name=WP_135493761.1;Ontology_term=GO:0006011,GO:0030244,GO:0016760,GO:0035438,GO:0016020;end_range=17559,.;gbkey=CDS;gene=bcsA;go_component=membrane|0016020||IEA;go_function=cellulose synthase (UDP-forming) activity|0016760||IEA,cyclic-di-GMP binding|0035438||IEA;go_process=UDP-alpha-D-glucose metabolic process|0006011||IEA,cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462520.1;locus_tag=C9E96_RS01425;partial=true;product=UDP-forming cellulose synthase catalytic subunit;protein_id=WP_135493761.1;transl_table=11
##sequence-region NZ_PYJX01000059.1 1 16398
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000059.1	RefSeq	region	1	16398	.	+	.	ID=NZ_PYJX01000059.1:1..16398;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000059.1	RefSeq	pseudogene	49	714	.	-	.	ID=gene-C9E96_RS04995;Name=C9E96_RS04995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS04995;old_locus_tag=C9E96_05110;partial=true;pseudo=true;start_range=.,49
NZ_PYJX01000059.1	Protein Homology	CDS	49	714	.	-	0	ID=cds-C9E96_RS04995;Parent=gene-C9E96_RS04995;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461005.1;locus_tag=C9E96_RS04995;partial=true;product=FUSC family protein;pseudo=true;start_range=.,49;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	833	1300	.	-	.	ID=gene-C9E96_RS05000;Name=sbmC;gbkey=Gene;gene=sbmC;gene_biotype=protein_coding;locus_tag=C9E96_RS05000;old_locus_tag=C9E96_05120
NZ_PYJX01000059.1	Protein Homology	CDS	833	1300	.	-	0	ID=cds-WP_000384326.1;Parent=gene-C9E96_RS05000;Dbxref=GenBank:WP_000384326.1;Name=WP_000384326.1;gbkey=CDS;gene=sbmC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461006.1;locus_tag=C9E96_RS05000;product=DNA gyrase inhibitor SbmC;protein_id=WP_000384326.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	1451	2623	.	-	.	ID=gene-C9E96_RS05005;Name=dacD;gbkey=Gene;gene=dacD;gene_biotype=protein_coding;locus_tag=C9E96_RS05005;old_locus_tag=C9E96_05125
NZ_PYJX01000059.1	Protein Homology	CDS	1451	2623	.	-	0	ID=cds-WP_135493906.1;Parent=gene-C9E96_RS05005;Dbxref=GenBank:WP_135493906.1;Name=WP_135493906.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=dacD;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461007.1;locus_tag=C9E96_RS05005;product=serine-type D-Ala-D-Ala carboxypeptidase DacD;protein_id=WP_135493906.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	2747	3511	.	-	.	ID=gene-C9E96_RS05010;Name=phsC;gbkey=Gene;gene=phsC;gene_biotype=protein_coding;locus_tag=C9E96_RS05010;old_locus_tag=C9E96_05130
NZ_PYJX01000059.1	Protein Homology	CDS	2747	3511	.	-	0	ID=cds-WP_001092553.1;Parent=gene-C9E96_RS05010;Dbxref=GenBank:WP_001092553.1;Name=WP_001092553.1;gbkey=CDS;gene=phsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461008.1;locus_tag=C9E96_RS05010;product=thiosulfate reductase cytochrome B subunit;protein_id=WP_001092553.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	3508	4086	.	-	.	ID=gene-C9E96_RS05015;Name=phsB;gbkey=Gene;gene=phsB;gene_biotype=protein_coding;locus_tag=C9E96_RS05015;old_locus_tag=C9E96_05135
NZ_PYJX01000059.1	Protein Homology	CDS	3508	4086	.	-	0	ID=cds-WP_001016236.1;Parent=gene-C9E96_RS05015;Dbxref=GenBank:WP_001016236.1;Name=WP_001016236.1;gbkey=CDS;gene=phsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461009.1;locus_tag=C9E96_RS05015;product=thiosulfate reductase electron transport protein PhsB;protein_id=WP_001016236.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	4101	6377	.	-	.	ID=gene-C9E96_RS05020;Name=phsA;gbkey=Gene;gene=phsA;gene_biotype=protein_coding;locus_tag=C9E96_RS05020;old_locus_tag=C9E96_05140
NZ_PYJX01000059.1	Protein Homology	CDS	4101	6377	.	-	0	ID=cds-WP_000028219.1;Parent=gene-C9E96_RS05020;Dbxref=GenBank:WP_000028219.1;Name=WP_000028219.1;Ontology_term=GO:0016491,GO:0043546,GO:0051539;gbkey=CDS;gene=phsA;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461010.1;locus_tag=C9E96_RS05020;product=thiosulfate reductase PhsA;protein_id=WP_000028219.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	pseudogene	6637	6729	.	-	.	ID=gene-C9E96_RS05025;Name=C9E96_RS05025;end_range=6729,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05025;old_locus_tag=C9E96_05145;partial=true;pseudo=true;start_range=.,6637
NZ_PYJX01000059.1	Protein Homology	CDS	6637	6729	.	-	0	ID=cds-C9E96_RS05025;Parent=gene-C9E96_RS05025;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=6729,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459907.1;locus_tag=C9E96_RS05025;partial=true;product=heavy metal-binding domain-containing protein;pseudo=true;start_range=.,6637;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	6996	9344	.	+	.	ID=gene-C9E96_RS05030;Name=sopA;gbkey=Gene;gene=sopA;gene_biotype=protein_coding;locus_tag=C9E96_RS05030;old_locus_tag=C9E96_05155
NZ_PYJX01000059.1	Protein Homology	CDS	6996	9344	.	+	0	ID=cds-WP_061378822.1;Parent=gene-C9E96_RS05030;Dbxref=GenBank:WP_061378822.1;Name=WP_061378822.1;gbkey=CDS;gene=sopA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461011.1;locus_tag=C9E96_RS05030;product=SPI-1 type III secretion system effector HECT-type E3 ubiquitin transferase SopA;protein_id=WP_061378822.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	pseudogene	9474	9551	.	-	.	ID=gene-C9E96_RS24155;Name=C9E96_RS24155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24155;partial=true;pseudo=true;start_range=.,9474
NZ_PYJX01000059.1	Protein Homology	CDS	9474	9551	.	-	0	ID=cds-C9E96_RS24155;Parent=gene-C9E96_RS24155;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226536.1;locus_tag=C9E96_RS24155;partial=true;product=hypothetical protein;pseudo=true;start_range=.,9474;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	9687	11117	.	+	.	ID=gene-C9E96_RS05035;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=C9E96_RS05035;old_locus_tag=C9E96_05160
NZ_PYJX01000059.1	Protein Homology	CDS	9687	11117	.	+	0	ID=cds-WP_000216702.1;Parent=gene-C9E96_RS05035;Dbxref=GenBank:WP_000216702.1;Name=WP_000216702.1;Ontology_term=GO:0006281,GO:0000175,GO:0003676,GO:0008310;gbkey=CDS;gene=sbcB;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA,single-stranded DNA 3'-5' DNA exonuclease activity|0008310||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461012.1;locus_tag=C9E96_RS05035;product=exodeoxyribonuclease I;protein_id=WP_000216702.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	11253	12611	.	-	.	ID=gene-C9E96_RS05040;Name=plaP;gbkey=Gene;gene=plaP;gene_biotype=protein_coding;locus_tag=C9E96_RS05040;old_locus_tag=C9E96_05165
NZ_PYJX01000059.1	Protein Homology	CDS	11253	12611	.	-	0	ID=cds-WP_001519005.1;Parent=gene-C9E96_RS05040;Dbxref=GenBank:WP_001519005.1;Name=WP_001519005.1;gbkey=CDS;gene=plaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416518.2;locus_tag=C9E96_RS05040;product=putrescine/proton symporter PlaP;protein_id=WP_001519005.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	12601	12663	.	-	.	ID=gene-C9E96_RS05045;Name=yoeI;gbkey=Gene;gene=yoeI;gene_biotype=protein_coding;locus_tag=C9E96_RS05045;old_locus_tag=C9E96_05170
NZ_PYJX01000059.1	Protein Homology	CDS	12601	12663	.	-	0	ID=cds-WP_096335044.1;Parent=gene-C9E96_RS05045;Dbxref=GenBank:WP_096335044.1;Name=WP_096335044.1;gbkey=CDS;gene=yoeI;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791246.1;locus_tag=C9E96_RS05045;product=membrane protein YoeI;protein_id=WP_096335044.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	12897	13811	.	-	.	ID=gene-C9E96_RS05050;Name=C9E96_RS05050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05050;old_locus_tag=C9E96_05175
NZ_PYJX01000059.1	Protein Homology	CDS	12897	13811	.	-	0	ID=cds-WP_135493908.1;Parent=gene-C9E96_RS05050;Dbxref=GenBank:WP_135493908.1;Name=WP_135493908.1;Ontology_term=GO:0001216,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461014.1;locus_tag=C9E96_RS05050;product=LysR family transcriptional regulator;protein_id=WP_135493908.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	13857	14681	.	-	.	ID=gene-C9E96_RS05055;Name=C9E96_RS05055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS05055;old_locus_tag=C9E96_05180
NZ_PYJX01000059.1	Protein Homology	CDS	13857	14681	.	-	0	ID=cds-WP_000754712.1;Parent=gene-C9E96_RS05055;Dbxref=GenBank:WP_000754712.1;Name=WP_000754712.1;Ontology_term=GO:0016491,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461015.1;locus_tag=C9E96_RS05055;product=SDR family oxidoreductase;protein_id=WP_000754712.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	gene	14844	14894	.	+	.	ID=gene-C9E96_RS05060;Name=hisL;gbkey=Gene;gene=hisL;gene_biotype=protein_coding;locus_tag=C9E96_RS05060;old_locus_tag=C9E96_05185
NZ_PYJX01000059.1	Protein Homology	CDS	14844	14894	.	+	0	ID=cds-WP_001364200.1;Parent=gene-C9E96_RS05060;Dbxref=GenBank:WP_001364200.1;Name=WP_001364200.1;Ontology_term=GO:0000105;gbkey=CDS;gene=hisL;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416522.1;locus_tag=C9E96_RS05060;product=his operon leader peptide;protein_id=WP_001364200.1;transl_table=11
NZ_PYJX01000059.1	cmsearch	sequence_feature	14870	14993	.	+	.	ID=id-NZ_PYJX01000059.1:14870..14993;Dbxref=RFAM:RF00514;Note=His leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYJX01000059.1	RefSeq	gene	15040	15939	.	+	.	ID=gene-C9E96_RS05065;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=C9E96_RS05065;old_locus_tag=C9E96_05190
NZ_PYJX01000059.1	Protein Homology	CDS	15040	15939	.	+	0	ID=cds-WP_000886600.1;Parent=gene-C9E96_RS05065;Dbxref=GenBank:WP_000886600.1;Name=WP_000886600.1;Ontology_term=GO:0000105,GO:0003879,GO:0005737;gbkey=CDS;gene=hisG;go_component=cytoplasm|0005737||IEA;go_function=ATP phosphoribosyltransferase activity|0003879||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128078.1;locus_tag=C9E96_RS05065;product=ATP phosphoribosyltransferase;protein_id=WP_000886600.1;transl_table=11
NZ_PYJX01000059.1	RefSeq	pseudogene	16042	16347	.	+	.	ID=gene-C9E96_RS05070;Name=C9E96_RS05070;end_range=16347,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS05070;old_locus_tag=C9E96_05195;partial=true;pseudo=true
NZ_PYJX01000059.1	Protein Homology	CDS	16042	16347	.	+	0	ID=cds-C9E96_RS05070;Parent=gene-C9E96_RS05070;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0016616,GO:0046872,GO:0051287;end_range=16347,.;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,metal ion binding|0046872||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416524.1;locus_tag=C9E96_RS05070;partial=true;product=histidinol dehydrogenase;pseudo=true;transl_table=11
##sequence-region NZ_PYJX01000038.1 1 16194
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000038.1	RefSeq	region	1	16194	.	+	.	ID=NZ_PYJX01000038.1:1..16194;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000038.1	RefSeq	gene	168	257	.	-	.	ID=gene-C9E96_RS02430;Name=C9E96_RS02430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02430;old_locus_tag=C9E96_02470
NZ_PYJX01000038.1	Protein Homology	CDS	168	257	.	-	0	ID=cds-WP_135369882.1;Parent=gene-C9E96_RS02430;Dbxref=GenBank:WP_135369882.1;Name=WP_135369882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502657.1;locus_tag=C9E96_RS02430;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_135369882.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	pseudogene	630	782	.	+	.	ID=gene-C9E96_RS24145;Name=C9E96_RS24145;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24145;partial=true;pseudo=true;start_range=.,630
NZ_PYJX01000038.1	Protein Homology	CDS	630	782	.	+	0	ID=cds-C9E96_RS24145;Parent=gene-C9E96_RS24145;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0019346,GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: protein motif:HMM:NF013237.6;locus_tag=C9E96_RS24145;partial=true;product=PLP-dependent transferase;pseudo=true;start_range=.,630;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	900	2198	.	+	.	ID=gene-C9E96_RS02440;Name=C9E96_RS02440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02440;old_locus_tag=C9E96_02480
NZ_PYJX01000038.1	Protein Homology	CDS	900	2198	.	+	0	ID=cds-WP_001150169.1;Parent=gene-C9E96_RS02440;Dbxref=GenBank:WP_001150169.1;Name=WP_001150169.1;Ontology_term=GO:0003333;gbkey=CDS;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462527.1;locus_tag=C9E96_RS02440;product=aromatic amino acid transport family protein;protein_id=WP_001150169.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	2299	3312	.	-	.	ID=gene-C9E96_RS02445;Name=dppF;gbkey=Gene;gene=dppF;gene_biotype=protein_coding;locus_tag=C9E96_RS02445;old_locus_tag=C9E96_02485
NZ_PYJX01000038.1	Protein Homology	CDS	2299	3312	.	-	0	ID=cds-WP_000103563.1;Parent=gene-C9E96_RS02445;Dbxref=GenBank:WP_000103563.1;Name=WP_000103563.1;gbkey=CDS;gene=dppF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462528.1;locus_tag=C9E96_RS02445;product=dipeptide ABC transporter ATP-binding subunit DppF;protein_id=WP_000103563.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	3309	4292	.	-	.	ID=gene-C9E96_RS02450;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=protein_coding;locus_tag=C9E96_RS02450;old_locus_tag=C9E96_02490
NZ_PYJX01000038.1	Protein Homology	CDS	3309	4292	.	-	0	ID=cds-WP_001196509.1;Parent=gene-C9E96_RS02450;Dbxref=GenBank:WP_001196509.1;Name=WP_001196509.1;Ontology_term=GO:0015833,GO:0000166,GO:0005524;gbkey=CDS;gene=dppD;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462529.1;locus_tag=C9E96_RS02450;product=dipeptide ABC transporter ATP-binding protein;protein_id=WP_001196509.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	4303	5205	.	-	.	ID=gene-C9E96_RS02455;Name=dppC;gbkey=Gene;gene=dppC;gene_biotype=protein_coding;locus_tag=C9E96_RS02455;old_locus_tag=C9E96_02495
NZ_PYJX01000038.1	Protein Homology	CDS	4303	5205	.	-	0	ID=cds-WP_135493805.1;Parent=gene-C9E96_RS02455;Dbxref=GenBank:WP_135493805.1;Name=WP_135493805.1;Ontology_term=GO:0055085;gbkey=CDS;gene=dppC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010426221.1;locus_tag=C9E96_RS02455;product=dipeptide ABC transporter permease DppC;protein_id=WP_135493805.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	5215	6234	.	-	.	ID=gene-C9E96_RS02460;Name=dppB;gbkey=Gene;gene=dppB;gene_biotype=protein_coding;locus_tag=C9E96_RS02460;old_locus_tag=C9E96_02500
NZ_PYJX01000038.1	Protein Homology	CDS	5215	6234	.	-	0	ID=cds-WP_000938843.1;Parent=gene-C9E96_RS02460;Dbxref=GenBank:WP_000938843.1;Name=WP_000938843.1;gbkey=CDS;gene=dppB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133865.1;locus_tag=C9E96_RS02460;product=dipeptide ABC transporter permease DppB;protein_id=WP_000938843.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	6391	7998	.	-	.	ID=gene-C9E96_RS02465;Name=dppA;gbkey=Gene;gene=dppA;gene_biotype=protein_coding;locus_tag=C9E96_RS02465;old_locus_tag=C9E96_02505
NZ_PYJX01000038.1	Protein Homology	CDS	6391	7998	.	-	0	ID=cds-WP_000028047.1;Parent=gene-C9E96_RS02465;Dbxref=GenBank:WP_000028047.1;Name=WP_000028047.1;Ontology_term=GO:0042938,GO:0071916,GO:0030288;gbkey=CDS;gene=dppA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=dipeptide transmembrane transporter activity|0071916||IEA;go_process=dipeptide transport|0042938||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462532.1;locus_tag=C9E96_RS02465;product=dipeptide ABC transporter periplasmic-binding protein DppA;protein_id=WP_000028047.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	8554	9879	.	-	.	ID=gene-C9E96_RS02470;Name=C9E96_RS02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02470;old_locus_tag=C9E96_02510
NZ_PYJX01000038.1	Protein Homology	CDS	8554	9879	.	-	0	ID=cds-WP_135369883.1;Parent=gene-C9E96_RS02470;Dbxref=GenBank:WP_135369883.1;Name=WP_135369883.1;Ontology_term=GO:0015851,GO:0055085,GO:0015205,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=nucleobase transmembrane transporter activity|0015205||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleobase transport|0015851||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462533.1;locus_tag=C9E96_RS02470;product=uracil-xanthine permease family protein;protein_id=WP_135369883.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	9937	11061	.	-	.	ID=gene-C9E96_RS02475;Name=C9E96_RS02475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02475;old_locus_tag=C9E96_02515
NZ_PYJX01000038.1	Protein Homology	CDS	9937	11061	.	-	0	ID=cds-WP_135493807.1;Parent=gene-C9E96_RS02475;Dbxref=GenBank:WP_135493807.1;Name=WP_135493807.1;Ontology_term=GO:0004062;gbkey=CDS;go_function=aryl sulfotransferase activity|0004062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462534.1;locus_tag=C9E96_RS02475;product=aryl-sulfate sulfotransferase;protein_id=WP_135493807.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	11211	12218	.	+	.	ID=gene-C9E96_RS02480;Name=C9E96_RS02480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS02480;old_locus_tag=C9E96_02520
NZ_PYJX01000038.1	Protein Homology	CDS	11211	12218	.	+	0	ID=cds-WP_000290707.1;Parent=gene-C9E96_RS02480;Dbxref=GenBank:WP_000290707.1;Name=WP_000290707.1;Ontology_term=GO:0006351,GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462535.1;locus_tag=C9E96_RS02480;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000290707.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	12209	12327	.	-	.	ID=gene-C9E96_RS02485;Name=C9E96_RS02485;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9E96_RS02485;old_locus_tag=C9E96_02525
NZ_PYJX01000038.1	cmsearch	ncRNA	12209	12327	.	-	.	ID=rna-C9E96_RS02485;Parent=gene-C9E96_RS02485;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS02485;product=RtT sRNA
NZ_PYJX01000038.1	cmsearch	exon	12209	12327	.	-	.	ID=exon-C9E96_RS02485-1;Parent=rna-C9E96_RS02485;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS02485;product=RtT sRNA
NZ_PYJX01000038.1	RefSeq	gene	12362	12495	.	-	.	ID=gene-C9E96_RS02490;Name=C9E96_RS02490;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9E96_RS02490;old_locus_tag=C9E96_02530
NZ_PYJX01000038.1	cmsearch	ncRNA	12362	12495	.	-	.	ID=rna-C9E96_RS02490;Parent=gene-C9E96_RS02490;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS02490;product=RtT sRNA
NZ_PYJX01000038.1	cmsearch	exon	12362	12495	.	-	.	ID=exon-C9E96_RS02490-1;Parent=rna-C9E96_RS02490;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9E96_RS02490;product=RtT sRNA
NZ_PYJX01000038.1	RefSeq	gene	12531	12607	.	-	.	ID=gene-C9E96_RS02495;Name=C9E96_RS02495;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9E96_RS02495;old_locus_tag=C9E96_02535
NZ_PYJX01000038.1	tRNAscan-SE	tRNA	12531	12607	.	-	.	ID=rna-C9E96_RS02495;Parent=gene-C9E96_RS02495;anticodon=(pos:complement(12571..12573));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS02495;product=tRNA-Pro
NZ_PYJX01000038.1	tRNAscan-SE	exon	12531	12607	.	-	.	ID=exon-C9E96_RS02495-1;Parent=rna-C9E96_RS02495;anticodon=(pos:complement(12571..12573));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9E96_RS02495;product=tRNA-Pro
NZ_PYJX01000038.1	RefSeq	gene	12698	14389	.	-	.	ID=gene-C9E96_RS02500;Name=eptB;gbkey=Gene;gene=eptB;gene_biotype=protein_coding;locus_tag=C9E96_RS02500;old_locus_tag=C9E96_02540
NZ_PYJX01000038.1	Protein Homology	CDS	12698	14389	.	-	0	ID=cds-WP_001269246.1;Parent=gene-C9E96_RS02500;Dbxref=GenBank:WP_001269246.1;Name=WP_001269246.1;Ontology_term=GO:0008484;gbkey=CDS;gene=eptB;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462536.1;locus_tag=C9E96_RS02500;product=kdo(2)-lipid A phosphoethanolamine 7''-transferase;protein_id=WP_001269246.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	14607	15134	.	-	.	ID=gene-C9E96_RS02505;Name=lpfE;gbkey=Gene;gene=lpfE;gene_biotype=protein_coding;locus_tag=C9E96_RS02505;old_locus_tag=C9E96_02545
NZ_PYJX01000038.1	Protein Homology	CDS	14607	15134	.	-	0	ID=cds-WP_061378565.1;Parent=gene-C9E96_RS02505;Dbxref=GenBank:WP_061378565.1;Name=WP_061378565.1;gbkey=CDS;gene=lpfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462537.1;locus_tag=C9E96_RS02505;product=long polar fimbrial protein LpfE;protein_id=WP_061378565.1;transl_table=11
NZ_PYJX01000038.1	RefSeq	gene	15140	16174	.	-	.	ID=gene-C9E96_RS02510;Name=lpfD;gbkey=Gene;gene=lpfD;gene_biotype=protein_coding;locus_tag=C9E96_RS02510;old_locus_tag=C9E96_02550
NZ_PYJX01000038.1	Protein Homology	CDS	15140	16174	.	-	0	ID=cds-WP_245306423.1;Parent=gene-C9E96_RS02510;Dbxref=GenBank:WP_245306423.1;Name=WP_245306423.1;gbkey=CDS;gene=lpfD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001541094.1;locus_tag=C9E96_RS02510;product=long polar fimbrial protein LpfD;protein_id=WP_245306423.1;transl_table=11
##sequence-region NZ_PYJX01000138.1 1 66370
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=595
NZ_PYJX01000138.1	RefSeq	region	1	66370	.	+	.	ID=NZ_PYJX01000138.1:1..66370;Dbxref=taxon:595;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Infantis;strain=88sa;sub-species=enterica
NZ_PYJX01000138.1	RefSeq	gene	57	2492	.	-	.	ID=gene-C9E96_RS11800;Name=ynfF;gbkey=Gene;gene=ynfF;gene_biotype=protein_coding;locus_tag=C9E96_RS11800;old_locus_tag=C9E96_12105
NZ_PYJX01000138.1	Protein Homology	CDS	57	2492	.	-	0	ID=cds-WP_135494225.1;Parent=gene-C9E96_RS11800;Dbxref=GenBank:WP_135494225.1;Name=WP_135494225.1;gbkey=CDS;gene=ynfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460458.1;locus_tag=C9E96_RS11800;product=selenate/tellurate reductase subunit YnfF;protein_id=WP_135494225.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	2591	5029	.	-	.	ID=gene-C9E96_RS11805;Name=ynfE;gbkey=Gene;gene=ynfE;gene_biotype=protein_coding;locus_tag=C9E96_RS11805;old_locus_tag=C9E96_12110
NZ_PYJX01000138.1	Protein Homology	CDS	2591	5029	.	-	0	ID=cds-WP_135494227.1;Parent=gene-C9E96_RS11805;Dbxref=GenBank:WP_135494227.1;Name=WP_135494227.1;gbkey=CDS;gene=ynfE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006788576.1;locus_tag=C9E96_RS11805;product=selenate/tellurate reductase subunit YnfE;protein_id=WP_135494227.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	5186	5494	.	-	.	ID=gene-C9E96_RS11810;Name=C9E96_RS11810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11810;old_locus_tag=C9E96_12115
NZ_PYJX01000138.1	Protein Homology	CDS	5186	5494	.	-	0	ID=cds-WP_000975516.1;Parent=gene-C9E96_RS11810;Dbxref=GenBank:WP_000975516.1;Name=WP_000975516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460460.1;locus_tag=C9E96_RS11810;product=DUF1161 domain-containing protein;protein_id=WP_000975516.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	5598	6308	.	+	.	ID=gene-C9E96_RS11815;Name=C9E96_RS11815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11815;old_locus_tag=C9E96_12120
NZ_PYJX01000138.1	Protein Homology	CDS	5598	6308	.	+	0	ID=cds-WP_080203898.1;Parent=gene-C9E96_RS11815;Dbxref=GenBank:WP_080203898.1;Name=WP_080203898.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465701.1;locus_tag=C9E96_RS11815;product=YnfC family lipoprotein;protein_id=WP_080203898.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	6349	6909	.	-	.	ID=gene-C9E96_RS11820;Name=speG;gbkey=Gene;gene=speG;gene_biotype=protein_coding;locus_tag=C9E96_RS11820;old_locus_tag=C9E96_12125
NZ_PYJX01000138.1	Protein Homology	CDS	6349	6909	.	-	0	ID=cds-WP_000199997.1;Parent=gene-C9E96_RS11820;Dbxref=GenBank:WP_000199997.1;Name=WP_000199997.1;Ontology_term=GO:0008080;gbkey=CDS;gene=speG;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460462.1;locus_tag=C9E96_RS11820;product=spermidine N1-acetyltransferase;protein_id=WP_000199997.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	6945	7286	.	-	.	ID=gene-C9E96_RS11825;Name=C9E96_RS11825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11825;old_locus_tag=C9E96_12130
NZ_PYJX01000138.1	Protein Homology	CDS	6945	7286	.	-	0	ID=cds-WP_001066440.1;Parent=gene-C9E96_RS11825;Dbxref=GenBank:WP_001066440.1;Name=WP_001066440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460463.1;locus_tag=C9E96_RS11825;product=DUF1283 family protein;protein_id=WP_001066440.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	7439	7765	.	+	.	ID=gene-C9E96_RS11830;Name=C9E96_RS11830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11830;old_locus_tag=C9E96_12135
NZ_PYJX01000138.1	Protein Homology	CDS	7439	7765	.	+	0	ID=cds-WP_000921389.1;Parent=gene-C9E96_RS11830;Dbxref=GenBank:WP_000921389.1;Name=WP_000921389.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460464.1;locus_tag=C9E96_RS11830;product=YnfA family protein;protein_id=WP_000921389.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	7887	9101	.	+	.	ID=gene-C9E96_RS11835;Name=rspA;gbkey=Gene;gene=rspA;gene_biotype=protein_coding;locus_tag=C9E96_RS11835;old_locus_tag=C9E96_12140
NZ_PYJX01000138.1	Protein Homology	CDS	7887	9101	.	+	0	ID=cds-WP_000706265.1;Parent=gene-C9E96_RS11835;Dbxref=GenBank:WP_000706265.1;Name=WP_000706265.1;gbkey=CDS;gene=rspA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001625315.1;locus_tag=C9E96_RS11835;product=starvation-sensing protein RspA;protein_id=WP_000706265.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	9112	10131	.	+	.	ID=gene-C9E96_RS11840;Name=C9E96_RS11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11840;old_locus_tag=C9E96_12145
NZ_PYJX01000138.1	Protein Homology	CDS	9112	10131	.	+	0	ID=cds-WP_023993252.1;Parent=gene-C9E96_RS11840;Dbxref=GenBank:WP_023993252.1;Name=WP_023993252.1;Ontology_term=GO:0008270,GO:0016491;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460466.1;locus_tag=C9E96_RS11840;product=Zn-dependent oxidoreductase;protein_id=WP_023993252.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	10185	11564	.	+	.	ID=gene-C9E96_RS11845;Name=C9E96_RS11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11845;old_locus_tag=C9E96_12150
NZ_PYJX01000138.1	Protein Homology	CDS	10185	11564	.	+	0	ID=cds-WP_000192118.1;Parent=gene-C9E96_RS11845;Dbxref=GenBank:WP_000192118.1;Name=WP_000192118.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012210164.1;locus_tag=C9E96_RS11845;product=MFS transporter;protein_id=WP_000192118.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	11708	13174	.	+	.	ID=gene-C9E96_RS11850;Name=C9E96_RS11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11850;old_locus_tag=C9E96_12155
NZ_PYJX01000138.1	Protein Homology	CDS	11708	13174	.	+	0	ID=cds-WP_080203899.1;Parent=gene-C9E96_RS11850;Dbxref=GenBank:WP_080203899.1;Name=WP_080203899.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460468.1;locus_tag=C9E96_RS11850;product=mannitol dehydrogenase family protein;protein_id=WP_080203899.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	13241	13444	.	-	.	ID=gene-C9E96_RS11855;Name=ydfZ;gbkey=Gene;gene=ydfZ;gene_biotype=protein_coding;locus_tag=C9E96_RS11855;old_locus_tag=C9E96_12160
NZ_PYJX01000138.1	Protein Homology	CDS	13241	13444	.	-	0	ID=cds-WP_000989267.1;Parent=gene-C9E96_RS11855;Dbxref=GenBank:WP_000989267.1;Name=WP_000989267.1;gbkey=CDS;gene=ydfZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460469.1;locus_tag=C9E96_RS11855;product=putative selenium delivery protein YdfZ;protein_id=WP_000989267.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	13625	14311	.	-	.	ID=gene-C9E96_RS11860;Name=C9E96_RS11860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11860;old_locus_tag=C9E96_12165
NZ_PYJX01000138.1	Protein Homology	CDS	13625	14311	.	-	0	ID=cds-WP_000215563.1;Parent=gene-C9E96_RS11860;Dbxref=GenBank:WP_000215563.1;Name=WP_000215563.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460470.1;locus_tag=C9E96_RS11860;product=GntR family transcriptional regulator;protein_id=WP_000215563.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	14441	15187	.	-	.	ID=gene-C9E96_RS11865;Name=ydfG;gbkey=Gene;gene=ydfG;gene_biotype=protein_coding;locus_tag=C9E96_RS11865;old_locus_tag=C9E96_12170
NZ_PYJX01000138.1	Protein Homology	CDS	14441	15187	.	-	0	ID=cds-WP_000636564.1;Parent=gene-C9E96_RS11865;Dbxref=GenBank:WP_000636564.1;Name=WP_000636564.1;Ontology_term=GO:0016491;gbkey=CDS;gene=ydfG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460471.1;locus_tag=C9E96_RS11865;product=bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG;protein_id=WP_000636564.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	15326	17368	.	+	.	ID=gene-C9E96_RS11870;Name=dcp;gbkey=Gene;gene=dcp;gene_biotype=protein_coding;locus_tag=C9E96_RS11870;old_locus_tag=C9E96_12175
NZ_PYJX01000138.1	Protein Homology	CDS	15326	17368	.	+	0	ID=cds-WP_000106261.1;Parent=gene-C9E96_RS11870;Dbxref=GenBank:WP_000106261.1;Name=WP_000106261.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=dcp;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460472.1;locus_tag=C9E96_RS11870;product=peptidyl-dipeptidase Dcp;protein_id=WP_000106261.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	17713	17895	.	+	.	ID=gene-C9E96_RS11880;Name=C9E96_RS11880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11880;old_locus_tag=C9E96_12185
NZ_PYJX01000138.1	Protein Homology	CDS	17713	17895	.	+	0	ID=cds-WP_000807642.1;Parent=gene-C9E96_RS11880;Dbxref=GenBank:WP_000807642.1;Name=WP_000807642.1;Ontology_term=GO:0006950;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460473.1;locus_tag=C9E96_RS11880;product=general stress protein;protein_id=WP_000807642.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	18015	18542	.	-	.	ID=gene-C9E96_RS11885;Name=C9E96_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11885;old_locus_tag=C9E96_12190
NZ_PYJX01000138.1	Protein Homology	CDS	18015	18542	.	-	0	ID=cds-WP_001235357.1;Parent=gene-C9E96_RS11885;Dbxref=GenBank:WP_001235357.1;Name=WP_001235357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460474.1;locus_tag=C9E96_RS11885;product=2-oxo-tetronate isomerase;protein_id=WP_001235357.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	18968	19360	.	+	.	ID=gene-C9E96_RS11890;Name=C9E96_RS11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11890;old_locus_tag=C9E96_12195
NZ_PYJX01000138.1	Protein Homology	CDS	18968	19360	.	+	0	ID=cds-WP_000776348.1;Parent=gene-C9E96_RS11890;Dbxref=GenBank:WP_000776348.1;Name=WP_000776348.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460475.1;locus_tag=C9E96_RS11890;product=YdeI family stress tolerance OB fold protein;protein_id=WP_000776348.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	19707	19802	.	-	.	ID=gene-C9E96_RS11900;Name=mgtS;gbkey=Gene;gene=mgtS;gene_biotype=protein_coding;locus_tag=C9E96_RS11900;old_locus_tag=C9E96_12205
NZ_PYJX01000138.1	Protein Homology	CDS	19707	19802	.	-	0	ID=cds-WP_000901531.1;Parent=gene-C9E96_RS11900;Dbxref=GenBank:WP_000901531.1;Name=WP_000901531.1;gbkey=CDS;gene=mgtS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165319.1;locus_tag=C9E96_RS11900;product=protein MgtS;protein_id=WP_000901531.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	20050	21237	.	-	.	ID=gene-C9E96_RS11905;Name=ydeE;gbkey=Gene;gene=ydeE;gene_biotype=protein_coding;locus_tag=C9E96_RS11905;old_locus_tag=C9E96_12210
NZ_PYJX01000138.1	Protein Homology	CDS	20050	21237	.	-	0	ID=cds-WP_001068050.1;Parent=gene-C9E96_RS11905;Dbxref=GenBank:WP_001068050.1;Name=WP_001068050.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=ydeE;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460476.1;locus_tag=C9E96_RS11905;product=efflux MFS transporter YdeE;protein_id=WP_001068050.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	21465	22367	.	+	.	ID=gene-C9E96_RS11910;Name=eamA;gbkey=Gene;gene=eamA;gene_biotype=protein_coding;locus_tag=C9E96_RS11910;old_locus_tag=C9E96_12215
NZ_PYJX01000138.1	Protein Homology	CDS	21465	22367	.	+	0	ID=cds-WP_000987753.1;Parent=gene-C9E96_RS11910;Dbxref=GenBank:WP_000987753.1;Name=WP_000987753.1;Ontology_term=GO:0016020;gbkey=CDS;gene=eamA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460477.1;locus_tag=C9E96_RS11910;product=O-acetylserine/cysteine exporter;protein_id=WP_000987753.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	22486	22701	.	-	.	ID=gene-C9E96_RS11915;Name=marB;gbkey=Gene;gene=marB;gene_biotype=protein_coding;locus_tag=C9E96_RS11915;old_locus_tag=C9E96_12220
NZ_PYJX01000138.1	Protein Homology	CDS	22486	22701	.	-	0	ID=cds-WP_000783049.1;Parent=gene-C9E96_RS11915;Dbxref=GenBank:WP_000783049.1;Name=WP_000783049.1;gbkey=CDS;gene=marB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460478.1;locus_tag=C9E96_RS11915;product=multiple antibiotic resistance protein MarB;protein_id=WP_000783049.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	22730	23113	.	-	.	ID=gene-C9E96_RS11920;Name=marA;gbkey=Gene;gene=marA;gene_biotype=protein_coding;locus_tag=C9E96_RS11920;old_locus_tag=C9E96_12225
NZ_PYJX01000138.1	Protein Homology	CDS	22730	23113	.	-	0	ID=cds-WP_000091194.1;Parent=gene-C9E96_RS11920;Dbxref=GenBank:WP_000091194.1;Name=WP_000091194.1;gbkey=CDS;gene=marA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000091194.1;locus_tag=C9E96_RS11920;product=MDR efflux pump AcrAB transcriptional activator MarA;protein_id=WP_000091194.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	23133	23567	.	-	.	ID=gene-C9E96_RS11925;Name=marR;gbkey=Gene;gene=marR;gene_biotype=protein_coding;locus_tag=C9E96_RS11925;old_locus_tag=C9E96_12230
NZ_PYJX01000138.1	Protein Homology	CDS	23133	23567	.	-	0	ID=cds-WP_135369861.1;Parent=gene-C9E96_RS11925;Dbxref=GenBank:WP_135369861.1;Name=WP_135369861.1;gbkey=CDS;gene=marR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460480.1;locus_tag=C9E96_RS11925;product=multiple antibiotic resistance transcriptional regulator MarR;protein_id=WP_135369861.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	23826	24491	.	+	.	ID=gene-C9E96_RS11930;Name=C9E96_RS11930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11930;old_locus_tag=C9E96_12235
NZ_PYJX01000138.1	Protein Homology	CDS	23826	24491	.	+	0	ID=cds-WP_080203900.1;Parent=gene-C9E96_RS11930;Dbxref=GenBank:WP_080203900.1;Name=WP_080203900.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460481.1;locus_tag=C9E96_RS11930;product=MarC family NAAT transporter;protein_id=WP_080203900.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	24538	25728	.	-	.	ID=gene-C9E96_RS11935;Name=C9E96_RS11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11935;old_locus_tag=C9E96_12240
NZ_PYJX01000138.1	Protein Homology	CDS	24538	25728	.	-	0	ID=cds-WP_000154614.1;Parent=gene-C9E96_RS11935;Dbxref=GenBank:WP_000154614.1;Name=WP_000154614.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460482.1;locus_tag=C9E96_RS11935;product=sugar transporter;protein_id=WP_000154614.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	25844	26716	.	-	.	ID=gene-C9E96_RS11940;Name=ptrR;gbkey=Gene;gene=ptrR;gene_biotype=protein_coding;locus_tag=C9E96_RS11940;old_locus_tag=C9E96_12245
NZ_PYJX01000138.1	Protein Homology	CDS	25844	26716	.	-	0	ID=cds-WP_000366539.1;Parent=gene-C9E96_RS11940;Dbxref=GenBank:WP_000366539.1;Name=WP_000366539.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ptrR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460483.1;locus_tag=C9E96_RS11940;product=putrescine utilization regulator PtrR;protein_id=WP_000366539.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	26819	28207	.	+	.	ID=gene-C9E96_RS11945;Name=sad;gbkey=Gene;gene=sad;gene_biotype=protein_coding;locus_tag=C9E96_RS11945;old_locus_tag=C9E96_12250
NZ_PYJX01000138.1	Protein Homology	CDS	26819	28207	.	+	0	ID=cds-WP_135494229.1;Parent=gene-C9E96_RS11945;Dbxref=GenBank:WP_135494229.1;Name=WP_135494229.1;Ontology_term=GO:0004030;gbkey=CDS;gene=sad;go_function=aldehyde dehydrogenase [NAD(P)+] activity|0004030||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460484.1;locus_tag=C9E96_RS11945;product=succinate-semialdehyde dehydrogenase;protein_id=WP_135494229.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	28280	29206	.	+	.	ID=gene-C9E96_RS11950;Name=glsB;gbkey=Gene;gene=glsB;gene_biotype=protein_coding;locus_tag=C9E96_RS11950;old_locus_tag=C9E96_12255
NZ_PYJX01000138.1	Protein Homology	CDS	28280	29206	.	+	0	ID=cds-WP_000312240.1;Parent=gene-C9E96_RS11950;Dbxref=GenBank:WP_000312240.1;Name=WP_000312240.1;Ontology_term=GO:0006541,GO:0004359;gbkey=CDS;gene=glsB;go_function=glutaminase activity|0004359||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460485.1;locus_tag=C9E96_RS11950;product=glutaminase B;protein_id=WP_000312240.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	29206	29565	.	+	.	ID=gene-C9E96_RS11955;Name=C9E96_RS11955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11955;old_locus_tag=C9E96_12260
NZ_PYJX01000138.1	Protein Homology	CDS	29206	29565	.	+	0	ID=cds-WP_000992451.1;Parent=gene-C9E96_RS11955;Dbxref=GenBank:WP_000992451.1;Name=WP_000992451.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460486.1;locus_tag=C9E96_RS11955;product=DUF4186 domain-containing protein;protein_id=WP_000992451.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	29821	30735	.	+	.	ID=gene-C9E96_RS11960;Name=C9E96_RS11960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11960;old_locus_tag=C9E96_12265
NZ_PYJX01000138.1	Protein Homology	CDS	29821	30735	.	+	0	ID=cds-WP_001675544.1;Parent=gene-C9E96_RS11960;Dbxref=GenBank:WP_001675544.1;Name=WP_001675544.1;Ontology_term=GO:0005254;gbkey=CDS;go_function=chloride channel activity|0005254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416037.2;locus_tag=C9E96_RS11960;product=bestrophin family protein;protein_id=WP_001675544.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	30791	31333	.	-	.	ID=gene-C9E96_RS11965;Name=C9E96_RS11965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11965;old_locus_tag=C9E96_12270
NZ_PYJX01000138.1	Protein Homology	CDS	30791	31333	.	-	0	ID=cds-WP_000513122.1;Parent=gene-C9E96_RS11965;Dbxref=GenBank:WP_000513122.1;Name=WP_000513122.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460488.1;locus_tag=C9E96_RS11965;product=YybH family protein;protein_id=WP_000513122.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	32050	33168	.	+	.	ID=gene-C9E96_RS11970;Name=ompC;gbkey=Gene;gene=ompC;gene_biotype=protein_coding;locus_tag=C9E96_RS11970;old_locus_tag=C9E96_12275
NZ_PYJX01000138.1	Protein Homology	CDS	32050	33168	.	+	0	ID=cds-WP_000758336.1;Parent=gene-C9E96_RS11970;Dbxref=GenBank:WP_000758336.1;Name=WP_000758336.1;Ontology_term=GO:0034220,GO:0015288;gbkey=CDS;gene=ompC;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460490.1;locus_tag=C9E96_RS11970;product=porin OmpC;protein_id=WP_000758336.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	33309	33650	.	-	.	ID=gene-C9E96_RS11975;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=C9E96_RS11975;old_locus_tag=C9E96_12280
NZ_PYJX01000138.1	Protein Homology	CDS	33309	33650	.	-	0	ID=cds-WP_000544772.1;Parent=gene-C9E96_RS11975;Dbxref=GenBank:WP_000544772.1;Name=WP_000544772.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460491.1;locus_tag=C9E96_RS11975;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544772.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	33663	34550	.	-	.	ID=gene-C9E96_RS11980;Name=C9E96_RS11980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11980;old_locus_tag=C9E96_12285
NZ_PYJX01000138.1	Protein Homology	CDS	33663	34550	.	-	0	ID=cds-WP_001189406.1;Parent=gene-C9E96_RS11980;Dbxref=GenBank:WP_001189406.1;Name=WP_001189406.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460492.1;locus_tag=C9E96_RS11980;product=ATP/GTP-binding protein;protein_id=WP_001189406.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	34538	35599	.	-	.	ID=gene-C9E96_RS11985;Name=C9E96_RS11985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11985;old_locus_tag=C9E96_12290
NZ_PYJX01000138.1	Protein Homology	CDS	34538	35599	.	-	0	ID=cds-WP_001660060.1;Parent=gene-C9E96_RS11985;Dbxref=GenBank:WP_001660060.1;Name=WP_001660060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460493.1;locus_tag=C9E96_RS11985;product=hydrogenase expression/formation C-terminal domain-containing protein;protein_id=WP_001660060.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	35617	36027	.	-	.	ID=gene-C9E96_RS11990;Name=C9E96_RS11990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS11990;old_locus_tag=C9E96_12295
NZ_PYJX01000138.1	Protein Homology	CDS	35617	36027	.	-	0	ID=cds-WP_000155985.1;Parent=gene-C9E96_RS11990;Dbxref=GenBank:WP_000155985.1;Name=WP_000155985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460494.1;locus_tag=C9E96_RS11990;product=hydrogenase;protein_id=WP_000155985.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	36024	36323	.	-	.	ID=gene-C9E96_RS11995;Name=hypC;gbkey=Gene;gene=hypC;gene_biotype=protein_coding;locus_tag=C9E96_RS11995;old_locus_tag=C9E96_12300
NZ_PYJX01000138.1	Protein Homology	CDS	36024	36323	.	-	0	ID=cds-WP_000334904.1;Parent=gene-C9E96_RS11995;Dbxref=GenBank:WP_000334904.1;Name=WP_000334904.1;Ontology_term=GO:0065003,GO:0016530,GO:0051082;gbkey=CDS;gene=hypC;go_function=metallochaperone activity|0016530||IEA,unfolded protein binding|0051082||IEA;go_process=protein-containing complex assembly|0065003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460495.1;locus_tag=C9E96_RS11995;product=HypC/HybG/HupF family hydrogenase formation chaperone;protein_id=WP_000334904.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	36323	36931	.	-	.	ID=gene-C9E96_RS12000;Name=hybD;gbkey=Gene;gene=hybD;gene_biotype=protein_coding;locus_tag=C9E96_RS12000;old_locus_tag=C9E96_12305
NZ_PYJX01000138.1	Protein Homology	CDS	36323	36931	.	-	0	ID=cds-WP_000852663.1;Parent=gene-C9E96_RS12000;Dbxref=GenBank:WP_000852663.1;Name=WP_000852663.1;Ontology_term=GO:0051604,GO:0004190,GO:0046872,GO:0009375;gbkey=CDS;gene=hybD;go_component=ferredoxin hydrogenase complex|0009375||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA,metal ion binding|0046872||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460496.1;locus_tag=C9E96_RS12000;product=HyaD/HybD family hydrogenase maturation endopeptidase;protein_id=WP_000852663.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	36937	37680	.	-	.	ID=gene-C9E96_RS12005;Name=cybH;gbkey=Gene;gene=cybH;gene_biotype=protein_coding;locus_tag=C9E96_RS12005;old_locus_tag=C9E96_12310
NZ_PYJX01000138.1	Protein Homology	CDS	36937	37680	.	-	0	ID=cds-WP_000924456.1;Parent=gene-C9E96_RS12005;Dbxref=GenBank:WP_000924456.1;Name=WP_000924456.1;Ontology_term=GO:0022904,GO:0005506,GO:0009055,GO:0016020;gbkey=CDS;gene=cybH;go_component=membrane|0016020||IEA;go_function=iron ion binding|0005506||IEA,electron transfer activity|0009055||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460497.1;locus_tag=C9E96_RS12005;product=Ni/Fe-hydrogenase%2C b-type cytochrome subunit;protein_id=WP_000924456.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	37631	39433	.	-	.	ID=gene-C9E96_RS12010;Name=C9E96_RS12010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12010;old_locus_tag=C9E96_12315
NZ_PYJX01000138.1	Protein Homology	CDS	37631	39433	.	-	0	ID=cds-WP_135494231.1;Parent=gene-C9E96_RS12010;Dbxref=GenBank:WP_135494231.1;Name=WP_135494231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460498.1;locus_tag=C9E96_RS12010;product=nickel-dependent hydrogenase large subunit;protein_id=WP_135494231.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	39436	40539	.	-	.	ID=gene-C9E96_RS12015;Name=C9E96_RS12015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12015;old_locus_tag=C9E96_12320
NZ_PYJX01000138.1	Protein Homology	CDS	39436	40539	.	-	0	ID=cds-WP_080203902.1;Parent=gene-C9E96_RS12015;Dbxref=GenBank:WP_080203902.1;Name=WP_080203902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460499.1;locus_tag=C9E96_RS12015;product=hydrogenase small subunit;protein_id=WP_080203902.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	40968	42059	.	+	.	ID=gene-C9E96_RS12020;Name=C9E96_RS12020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12020;old_locus_tag=C9E96_12325
NZ_PYJX01000138.1	Protein Homology	CDS	40968	42059	.	+	0	ID=cds-WP_000981375.1;Parent=gene-C9E96_RS12020;Dbxref=GenBank:WP_000981375.1;Name=WP_000981375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460500.1;locus_tag=C9E96_RS12020;product=choloylglycine hydrolase family protein;protein_id=WP_000981375.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	42105	42896	.	+	.	ID=gene-C9E96_RS12025;Name=C9E96_RS12025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12025;old_locus_tag=C9E96_12330
NZ_PYJX01000138.1	Protein Homology	CDS	42105	42896	.	+	0	ID=cds-WP_072101097.1;Parent=gene-C9E96_RS12025;Dbxref=GenBank:WP_072101097.1;Name=WP_072101097.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460501.1;locus_tag=C9E96_RS12025;product=FadR/GntR family transcriptional regulator;protein_id=WP_072101097.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	42955	43980	.	-	.	ID=gene-C9E96_RS12030;Name=C9E96_RS12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12030;old_locus_tag=C9E96_12335
NZ_PYJX01000138.1	Protein Homology	CDS	42955	43980	.	-	0	ID=cds-WP_000864935.1;Parent=gene-C9E96_RS12030;Dbxref=GenBank:WP_000864935.1;Name=WP_000864935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460502.1;locus_tag=C9E96_RS12030;product=zinc-binding alcohol dehydrogenase family protein;protein_id=WP_000864935.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	43955	45241	.	-	.	ID=gene-C9E96_RS12035;Name=C9E96_RS12035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12035;old_locus_tag=C9E96_12340
NZ_PYJX01000138.1	Protein Homology	CDS	43955	45241	.	-	0	ID=cds-WP_135494233.1;Parent=gene-C9E96_RS12035;Dbxref=GenBank:WP_135494233.1;Name=WP_135494233.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460503.1;locus_tag=C9E96_RS12035;product=MFS transporter;protein_id=WP_135494233.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	45418	46974	.	-	.	ID=gene-C9E96_RS12040;Name=C9E96_RS12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12040;old_locus_tag=C9E96_12345
NZ_PYJX01000138.1	Protein Homology	CDS	45418	46974	.	-	0	ID=cds-WP_080203903.1;Parent=gene-C9E96_RS12040;Dbxref=GenBank:WP_080203903.1;Name=WP_080203903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460504.1;locus_tag=C9E96_RS12040;product=PhoPQ-activated pathogenicity-related family protein;protein_id=WP_080203903.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	47044	48285	.	-	.	ID=gene-C9E96_RS12045;Name=C9E96_RS12045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12045;old_locus_tag=C9E96_12350
NZ_PYJX01000138.1	Protein Homology	CDS	47044	48285	.	-	0	ID=cds-WP_080203904.1;Parent=gene-C9E96_RS12045;Dbxref=GenBank:WP_080203904.1;Name=WP_080203904.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460505.1;locus_tag=C9E96_RS12045;product=MFS transporter;protein_id=WP_080203904.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	48275	49783	.	-	.	ID=gene-C9E96_RS12050;Name=C9E96_RS12050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12050;old_locus_tag=C9E96_12355
NZ_PYJX01000138.1	Protein Homology	CDS	48275	49783	.	-	0	ID=cds-WP_000199413.1;Parent=gene-C9E96_RS12050;Dbxref=GenBank:WP_000199413.1;Name=WP_000199413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460506.1;locus_tag=C9E96_RS12050;product=FAD-dependent oxidoreductase;protein_id=WP_000199413.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	49828	50316	.	+	.	ID=gene-C9E96_RS12055;Name=C9E96_RS12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12055;old_locus_tag=C9E96_12360
NZ_PYJX01000138.1	Protein Homology	CDS	49828	50316	.	+	0	ID=cds-WP_080203905.1;Parent=gene-C9E96_RS12055;Dbxref=GenBank:WP_080203905.1;Name=WP_080203905.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460507.1;locus_tag=C9E96_RS12055;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_080203905.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	50509	51582	.	+	.	ID=gene-C9E96_RS12060;Name=C9E96_RS12060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12060;old_locus_tag=C9E96_12365
NZ_PYJX01000138.1	Protein Homology	CDS	50509	51582	.	+	0	ID=cds-WP_080203906.1;Parent=gene-C9E96_RS12060;Dbxref=GenBank:WP_080203906.1;Name=WP_080203906.1;Ontology_term=GO:0016740,GO:0016853;gbkey=CDS;go_function=transferase activity|0016740||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001527732.1;locus_tag=C9E96_RS12060;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=WP_080203906.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	51640	52029	.	-	.	ID=gene-C9E96_RS12065;Name=C9E96_RS12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12065;old_locus_tag=C9E96_12370
NZ_PYJX01000138.1	Protein Homology	CDS	51640	52029	.	-	0	ID=cds-WP_079972972.1;Parent=gene-C9E96_RS12065;Dbxref=GenBank:WP_079972972.1;Name=WP_079972972.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460509.1;locus_tag=C9E96_RS12065;product=RidA family protein;protein_id=WP_079972972.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	52200	52484	.	-	.	ID=gene-C9E96_RS12070;Name=C9E96_RS12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12070;old_locus_tag=C9E96_12375
NZ_PYJX01000138.1	Protein Homology	CDS	52200	52484	.	-	0	ID=cds-WP_000221343.1;Parent=gene-C9E96_RS12070;Dbxref=GenBank:WP_000221343.1;Name=WP_000221343.1;Ontology_term=GO:0017148,GO:0004521,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=RNA endonuclease activity|0004521||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460510.1;locus_tag=C9E96_RS12070;product=type II toxin-antitoxin system RelE family toxin;protein_id=WP_000221343.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	52474	52722	.	-	.	ID=gene-C9E96_RS12075;Name=C9E96_RS12075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12075;old_locus_tag=C9E96_12380
NZ_PYJX01000138.1	Protein Homology	CDS	52474	52722	.	-	0	ID=cds-WP_000885424.1;Parent=gene-C9E96_RS12075;Dbxref=GenBank:WP_000885424.1;Name=WP_000885424.1;Ontology_term=GO:0006355,GO:0045927,GO:0003677,GO:0097351,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=DNA binding|0003677||IEA,toxin sequestering activity|0097351||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,positive regulation of growth|0045927||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460511.1;locus_tag=C9E96_RS12075;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_000885424.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	pseudogene	52987	53085	.	+	.	ID=gene-C9E96_RS24430;Name=C9E96_RS24430;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS24430;partial=true;pseudo=true;start_range=.,52987
NZ_PYJX01000138.1	Protein Homology	CDS	52987	53085	.	+	0	ID=cds-C9E96_RS24430;Parent=gene-C9E96_RS24430;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_090138499.1;locus_tag=C9E96_RS24430;partial=true;product=STM2901 family protein;pseudo=true;start_range=.,52987;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	53079	53411	.	+	.	ID=gene-C9E96_RS12085;Name=C9E96_RS12085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12085;old_locus_tag=C9E96_12390
NZ_PYJX01000138.1	Protein Homology	CDS	53079	53411	.	+	0	ID=cds-WP_000253154.1;Parent=gene-C9E96_RS12085;Dbxref=GenBank:WP_000253154.1;Name=WP_000253154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000253166.1;locus_tag=C9E96_RS12085;product=DUF1493 family protein;protein_id=WP_000253154.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	pseudogene	53691	53892	.	+	.	ID=gene-C9E96_RS12090;Name=C9E96_RS12090;end_range=53892,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS12090;old_locus_tag=C9E96_12395;partial=true;pseudo=true
NZ_PYJX01000138.1	Protein Homology	CDS	53691	53892	.	+	0	ID=cds-C9E96_RS12090;Parent=gene-C9E96_RS12090;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=53892,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460512.1;locus_tag=C9E96_RS12090;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYJX01000138.1	RefSeq	pseudogene	53884	54330	.	-	.	ID=gene-C9E96_RS12095;Name=C9E96_RS12095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS12095;old_locus_tag=C9E96_12400;partial=true;pseudo=true;start_range=.,53884
NZ_PYJX01000138.1	Protein Homology	CDS	53884	54330	.	-	0	ID=cds-C9E96_RS12095;Parent=gene-C9E96_RS12095;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000996655.1;locus_tag=C9E96_RS12095;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,53884;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	55236	56144	.	+	.	ID=gene-C9E96_RS12105;Name=C9E96_RS12105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12105;old_locus_tag=C9E96_12410
NZ_PYJX01000138.1	Protein Homology	CDS	55236	56144	.	+	0	ID=cds-WP_135494235.1;Parent=gene-C9E96_RS12105;Dbxref=GenBank:WP_135494235.1;Name=WP_135494235.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001176636.1;locus_tag=C9E96_RS12105;product=LysR family transcriptional regulator;protein_id=WP_135494235.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	56318	57298	.	+	.	ID=gene-C9E96_RS12110;Name=C9E96_RS12110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12110;old_locus_tag=C9E96_12415
NZ_PYJX01000138.1	Protein Homology	CDS	56318	57298	.	+	0	ID=cds-WP_023993266.1;Parent=gene-C9E96_RS12110;Dbxref=GenBank:WP_023993266.1;Name=WP_023993266.1;Ontology_term=GO:0004497,GO:0010181,GO:0016703;gbkey=CDS;go_function=monooxygenase activity|0004497||IEA,FMN binding|0010181||IEA,oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)|0016703||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441349.1;locus_tag=C9E96_RS12110;product=NAD(P)H-dependent flavin oxidoreductase;protein_id=WP_023993266.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	57564	59030	.	-	.	ID=gene-C9E96_RS12115;Name=C9E96_RS12115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12115;old_locus_tag=C9E96_12420
NZ_PYJX01000138.1	Protein Homology	CDS	57564	59030	.	-	0	ID=cds-WP_023994283.1;Parent=gene-C9E96_RS12115;Dbxref=GenBank:WP_023994283.1;Name=WP_023994283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460513.1;locus_tag=C9E96_RS12115;product=hypothetical protein;protein_id=WP_023994283.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	59288	60295	.	+	.	ID=gene-C9E96_RS12120;Name=C9E96_RS12120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12120;old_locus_tag=C9E96_12425
NZ_PYJX01000138.1	Protein Homology	CDS	59288	60295	.	+	0	ID=cds-WP_135494237.1;Parent=gene-C9E96_RS12120;Dbxref=GenBank:WP_135494237.1;Name=WP_135494237.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460514.1;locus_tag=C9E96_RS12120;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_135494237.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	60439	61890	.	+	.	ID=gene-C9E96_RS12125;Name=nhaC;gbkey=Gene;gene=nhaC;gene_biotype=protein_coding;locus_tag=C9E96_RS12125;old_locus_tag=C9E96_12430
NZ_PYJX01000138.1	Protein Homology	CDS	60439	61890	.	+	0	ID=cds-WP_001276631.1;Parent=gene-C9E96_RS12125;Dbxref=GenBank:WP_001276631.1;Name=WP_001276631.1;Ontology_term=GO:0006814,GO:1902600,GO:0015297,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaC;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA,sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460515.1;locus_tag=C9E96_RS12125;product=Na+/H+ antiporter NhaC;protein_id=WP_001276631.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	61903	63105	.	+	.	ID=gene-C9E96_RS12130;Name=C9E96_RS12130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9E96_RS12130;old_locus_tag=C9E96_12435
NZ_PYJX01000138.1	Protein Homology	CDS	61903	63105	.	+	0	ID=cds-WP_135494239.1;Parent=gene-C9E96_RS12130;Dbxref=GenBank:WP_135494239.1;Name=WP_135494239.1;Ontology_term=GO:0009086,GO:0030170,GO:0047804;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine-S-conjugate beta-lyase activity|0047804||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460516.1;locus_tag=C9E96_RS12130;product=MalY/PatB family protein;protein_id=WP_135494239.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	gene	63219	65294	.	-	.	ID=gene-C9E96_RS12135;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=C9E96_RS12135;old_locus_tag=C9E96_12440
NZ_PYJX01000138.1	Protein Homology	CDS	63219	65294	.	-	0	ID=cds-WP_080203907.1;Parent=gene-C9E96_RS12135;Dbxref=GenBank:WP_080203907.1;Name=WP_080203907.1;Ontology_term=GO:0005980,GO:0120549;gbkey=CDS;gene=glgX;go_function=limit dextrin alpha-1%2C6-maltotetraose-hydrolase activity|0120549||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460517.1;locus_tag=C9E96_RS12135;product=glycogen debranching protein GlgX;protein_id=WP_080203907.1;transl_table=11
NZ_PYJX01000138.1	RefSeq	pseudogene	65351	66307	.	-	.	ID=gene-C9E96_RS12140;Name=C9E96_RS12140;end_range=66307,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9E96_RS12140;old_locus_tag=C9E96_12445;partial=true;pseudo=true
NZ_PYJX01000138.1	Protein Homology	CDS	65351	66307	.	-	0	ID=cds-C9E96_RS12140;Parent=gene-C9E96_RS12140;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=66307,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460518.1;locus_tag=C9E96_RS12140;partial=true;product=malto-oligosyltrehalose synthase;pseudo=true;transl_table=11
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