##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM474501v1
#!genome-build-accession NCBI_Assembly:GCF_004745015.1
#!annotation-date 08/17/2025 13:08:21
#!annotation-source NCBI RefSeq GCF_004745015.1-RS_2025_08_17
##sequence-region NZ_PYKE01000210.1 1 724
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000210.1	RefSeq	region	1	724	.	+	.	ID=NZ_PYKE01000210.1:1..724;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000210.1	RefSeq	pseudogene	1	484	.	-	.	ID=gene-C9F05_RS13680;Name=C9F05_RS13680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS13680;old_locus_tag=C9F05_14070;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000210.1	Protein Homology	CDS	1	484	.	-	0	ID=cds-C9F05_RS13680;Parent=gene-C9F05_RS13680;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462381.1;locus_tag=C9F05_RS13680;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000299.1 1 19066
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000299.1	RefSeq	region	1	19066	.	+	.	ID=NZ_PYKE01000299.1:1..19066;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000299.1	RefSeq	gene	360	1478	.	+	.	ID=gene-C9F05_RS20445;Name=ompC;gbkey=Gene;gene=ompC;gene_biotype=protein_coding;locus_tag=C9F05_RS20445;old_locus_tag=C9F05_21010
NZ_PYKE01000299.1	Protein Homology	CDS	360	1478	.	+	0	ID=cds-WP_000758335.1;Parent=gene-C9F05_RS20445;Dbxref=GenBank:WP_000758335.1;Name=WP_000758335.1;Ontology_term=GO:0034220,GO:0015288;gbkey=CDS;gene=ompC;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460490.1;locus_tag=C9F05_RS20445;product=porin OmpC;protein_id=WP_000758335.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	1619	1960	.	-	.	ID=gene-C9F05_RS20450;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=C9F05_RS20450;old_locus_tag=C9F05_21015
NZ_PYKE01000299.1	Protein Homology	CDS	1619	1960	.	-	0	ID=cds-WP_000544776.1;Parent=gene-C9F05_RS20450;Dbxref=GenBank:WP_000544776.1;Name=WP_000544776.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460491.1;locus_tag=C9F05_RS20450;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544776.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	1973	2860	.	-	.	ID=gene-C9F05_RS20455;Name=C9F05_RS20455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20455;old_locus_tag=C9F05_21020
NZ_PYKE01000299.1	Protein Homology	CDS	1973	2860	.	-	0	ID=cds-WP_135370589.1;Parent=gene-C9F05_RS20455;Dbxref=GenBank:WP_135370589.1;Name=WP_135370589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460492.1;locus_tag=C9F05_RS20455;product=ATP/GTP-binding protein;protein_id=WP_135370589.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	2848	3909	.	-	.	ID=gene-C9F05_RS20460;Name=C9F05_RS20460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20460;old_locus_tag=C9F05_21025
NZ_PYKE01000299.1	Protein Homology	CDS	2848	3909	.	-	0	ID=cds-WP_135370590.1;Parent=gene-C9F05_RS20460;Dbxref=GenBank:WP_135370590.1;Name=WP_135370590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460493.1;locus_tag=C9F05_RS20460;product=hydrogenase expression/formation C-terminal domain-containing protein;protein_id=WP_135370590.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	3927	4337	.	-	.	ID=gene-C9F05_RS20465;Name=C9F05_RS20465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20465;old_locus_tag=C9F05_21030
NZ_PYKE01000299.1	Protein Homology	CDS	3927	4337	.	-	0	ID=cds-WP_000155986.1;Parent=gene-C9F05_RS20465;Dbxref=GenBank:WP_000155986.1;Name=WP_000155986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460494.1;locus_tag=C9F05_RS20465;product=hydrogenase;protein_id=WP_000155986.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	4334	4633	.	-	.	ID=gene-C9F05_RS20470;Name=hypC;gbkey=Gene;gene=hypC;gene_biotype=protein_coding;locus_tag=C9F05_RS20470;old_locus_tag=C9F05_21035
NZ_PYKE01000299.1	Protein Homology	CDS	4334	4633	.	-	0	ID=cds-WP_000334904.1;Parent=gene-C9F05_RS20470;Dbxref=GenBank:WP_000334904.1;Name=WP_000334904.1;Ontology_term=GO:0065003,GO:0016530,GO:0051082;gbkey=CDS;gene=hypC;go_function=metallochaperone activity|0016530||IEA,unfolded protein binding|0051082||IEA;go_process=protein-containing complex assembly|0065003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460495.1;locus_tag=C9F05_RS20470;product=HypC/HybG/HupF family hydrogenase formation chaperone;protein_id=WP_000334904.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	4633	5241	.	-	.	ID=gene-C9F05_RS20475;Name=hybD;gbkey=Gene;gene=hybD;gene_biotype=protein_coding;locus_tag=C9F05_RS20475;old_locus_tag=C9F05_21040
NZ_PYKE01000299.1	Protein Homology	CDS	4633	5241	.	-	0	ID=cds-WP_135370591.1;Parent=gene-C9F05_RS20475;Dbxref=GenBank:WP_135370591.1;Name=WP_135370591.1;Ontology_term=GO:0051604,GO:0004190,GO:0046872,GO:0009375;gbkey=CDS;gene=hybD;go_component=ferredoxin hydrogenase complex|0009375||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA,metal ion binding|0046872||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460496.1;locus_tag=C9F05_RS20475;product=HyaD/HybD family hydrogenase maturation endopeptidase;protein_id=WP_135370591.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	5247	5990	.	-	.	ID=gene-C9F05_RS20480;Name=cybH;gbkey=Gene;gene=cybH;gene_biotype=protein_coding;locus_tag=C9F05_RS20480;old_locus_tag=C9F05_21045
NZ_PYKE01000299.1	Protein Homology	CDS	5247	5990	.	-	0	ID=cds-WP_000924456.1;Parent=gene-C9F05_RS20480;Dbxref=GenBank:WP_000924456.1;Name=WP_000924456.1;Ontology_term=GO:0022904,GO:0005506,GO:0009055,GO:0016020;gbkey=CDS;gene=cybH;go_component=membrane|0016020||IEA;go_function=iron ion binding|0005506||IEA,electron transfer activity|0009055||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460497.1;locus_tag=C9F05_RS20480;product=Ni/Fe-hydrogenase%2C b-type cytochrome subunit;protein_id=WP_000924456.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	5941	7743	.	-	.	ID=gene-C9F05_RS20485;Name=C9F05_RS20485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20485;old_locus_tag=C9F05_21050
NZ_PYKE01000299.1	Protein Homology	CDS	5941	7743	.	-	0	ID=cds-WP_000331200.1;Parent=gene-C9F05_RS20485;Dbxref=GenBank:WP_000331200.1;Name=WP_000331200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460498.1;locus_tag=C9F05_RS20485;product=nickel-dependent hydrogenase large subunit;protein_id=WP_000331200.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	7746	8849	.	-	.	ID=gene-C9F05_RS20490;Name=C9F05_RS20490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20490;old_locus_tag=C9F05_21055
NZ_PYKE01000299.1	Protein Homology	CDS	7746	8849	.	-	0	ID=cds-WP_001194448.1;Parent=gene-C9F05_RS20490;Dbxref=GenBank:WP_001194448.1;Name=WP_001194448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460499.1;locus_tag=C9F05_RS20490;product=hydrogenase small subunit;protein_id=WP_001194448.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	9278	10369	.	+	.	ID=gene-C9F05_RS20495;Name=C9F05_RS20495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20495;old_locus_tag=C9F05_21060
NZ_PYKE01000299.1	Protein Homology	CDS	9278	10369	.	+	0	ID=cds-WP_135370592.1;Parent=gene-C9F05_RS20495;Dbxref=GenBank:WP_135370592.1;Name=WP_135370592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460500.1;locus_tag=C9F05_RS20495;product=choloylglycine hydrolase family protein;protein_id=WP_135370592.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	10415	11206	.	+	.	ID=gene-C9F05_RS20500;Name=C9F05_RS20500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20500;old_locus_tag=C9F05_21065
NZ_PYKE01000299.1	Protein Homology	CDS	10415	11206	.	+	0	ID=cds-WP_001518759.1;Parent=gene-C9F05_RS20500;Dbxref=GenBank:WP_001518759.1;Name=WP_001518759.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460501.1;locus_tag=C9F05_RS20500;product=FadR/GntR family transcriptional regulator;protein_id=WP_001518759.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	11265	12290	.	-	.	ID=gene-C9F05_RS20505;Name=C9F05_RS20505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20505;old_locus_tag=C9F05_21070
NZ_PYKE01000299.1	Protein Homology	CDS	11265	12290	.	-	0	ID=cds-WP_000864924.1;Parent=gene-C9F05_RS20505;Dbxref=GenBank:WP_000864924.1;Name=WP_000864924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460502.1;locus_tag=C9F05_RS20505;product=zinc-binding alcohol dehydrogenase family protein;protein_id=WP_000864924.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	12265	13551	.	-	.	ID=gene-C9F05_RS20510;Name=C9F05_RS20510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20510;old_locus_tag=C9F05_21075
NZ_PYKE01000299.1	Protein Homology	CDS	12265	13551	.	-	0	ID=cds-WP_000824240.1;Parent=gene-C9F05_RS20510;Dbxref=GenBank:WP_000824240.1;Name=WP_000824240.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460503.1;locus_tag=C9F05_RS20510;product=MFS transporter;protein_id=WP_000824240.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	13728	15284	.	-	.	ID=gene-C9F05_RS20515;Name=C9F05_RS20515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20515;old_locus_tag=C9F05_21080
NZ_PYKE01000299.1	Protein Homology	CDS	13728	15284	.	-	0	ID=cds-WP_135370593.1;Parent=gene-C9F05_RS20515;Dbxref=GenBank:WP_135370593.1;Name=WP_135370593.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460504.1;locus_tag=C9F05_RS20515;product=PhoPQ-activated pathogenicity-related family protein;protein_id=WP_135370593.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	15354	16595	.	-	.	ID=gene-C9F05_RS20520;Name=C9F05_RS20520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20520;old_locus_tag=C9F05_21085
NZ_PYKE01000299.1	Protein Homology	CDS	15354	16595	.	-	0	ID=cds-WP_080217742.1;Parent=gene-C9F05_RS20520;Dbxref=GenBank:WP_080217742.1;Name=WP_080217742.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460505.1;locus_tag=C9F05_RS20520;product=MFS transporter;protein_id=WP_080217742.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	16585	18093	.	-	.	ID=gene-C9F05_RS20525;Name=C9F05_RS20525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20525;old_locus_tag=C9F05_21090
NZ_PYKE01000299.1	Protein Homology	CDS	16585	18093	.	-	0	ID=cds-WP_135370594.1;Parent=gene-C9F05_RS20525;Dbxref=GenBank:WP_135370594.1;Name=WP_135370594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460506.1;locus_tag=C9F05_RS20525;product=FAD-dependent oxidoreductase;protein_id=WP_135370594.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	18138	18626	.	+	.	ID=gene-C9F05_RS20530;Name=C9F05_RS20530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20530;old_locus_tag=C9F05_21095
NZ_PYKE01000299.1	Protein Homology	CDS	18138	18626	.	+	0	ID=cds-WP_001293637.1;Parent=gene-C9F05_RS20530;Dbxref=GenBank:WP_001293637.1;Name=WP_001293637.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460507.1;locus_tag=C9F05_RS20530;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_001293637.1;transl_table=11
NZ_PYKE01000299.1	RefSeq	gene	18819	19066	.	+	.	ID=gene-C9F05_RS20535;Name=C9F05_RS20535;end_range=19066,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20535;old_locus_tag=C9F05_21100;partial=true
NZ_PYKE01000299.1	Protein Homology	CDS	18819	19066	.	+	0	ID=cds-WP_167854926.1;Parent=gene-C9F05_RS20535;Dbxref=GenBank:WP_167854926.1;Name=WP_167854926.1;Ontology_term=GO:0016740,GO:0016853;end_range=19066,.;gbkey=CDS;go_function=transferase activity|0016740||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000954687.1;locus_tag=C9F05_RS20535;partial=true;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=WP_167854926.1;transl_table=11
##sequence-region NZ_PYKE01000207.1 1 711
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000207.1	RefSeq	region	1	711	.	+	.	ID=NZ_PYKE01000207.1:1..711;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000207.1	RefSeq	gene	1	61	.	-	.	ID=gene-C9F05_RS13405;Name=C9F05_RS13405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13405;partial=true;start_range=.,1
NZ_PYKE01000207.1	Protein Homology	CDS	1	61	.	-	0	ID=cds-WP_001545491.1;Parent=gene-C9F05_RS13405;Dbxref=GenBank:WP_001545491.1;Name=WP_001545491.1;Ontology_term=GO:0019645,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309008.1;locus_tag=C9F05_RS13405;partial=true;product=DmsC/YnfH family molybdoenzyme membrane anchor subunit;protein_id=WP_001545491.1;start_range=.,1;transl_table=11
NZ_PYKE01000207.1	RefSeq	gene	63	680	.	-	.	ID=gene-C9F05_RS13410;Name=dmsB;gbkey=Gene;gene=dmsB;gene_biotype=protein_coding;locus_tag=C9F05_RS13410;old_locus_tag=C9F05_13790
NZ_PYKE01000207.1	Protein Homology	CDS	63	680	.	-	0	ID=cds-WP_000213069.1;Parent=gene-C9F05_RS13410;Dbxref=GenBank:WP_000213069.1;Name=WP_000213069.1;gbkey=CDS;gene=dmsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000213046.1;locus_tag=C9F05_RS13410;product=dimethylsulfoxide reductase iron-sulfur subunit DmsB;protein_id=WP_000213069.1;transl_table=11
##sequence-region NZ_PYKE01000239.1 1 708
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000239.1	RefSeq	region	1	708	.	+	.	ID=NZ_PYKE01000239.1:1..708;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000239.1	RefSeq	pseudogene	607	708	.	+	.	ID=gene-C9F05_RS23875;Name=C9F05_RS23875;end_range=708,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23875;partial=true;pseudo=true
NZ_PYKE01000239.1	Protein Homology	CDS	607	708	.	+	0	ID=cds-C9F05_RS23875;Parent=gene-C9F05_RS23875;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=708,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463122.1;locus_tag=C9F05_RS23875;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000002.1 1 701
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000002.1	RefSeq	region	1	701	.	+	.	ID=NZ_PYKE01000002.1:1..701;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000002.1	RefSeq	gene	50	701	.	+	.	ID=gene-C9F05_RS00010;Name=waaZ;end_range=701,.;gbkey=Gene;gene=waaZ;gene_biotype=protein_coding;locus_tag=C9F05_RS00010;old_locus_tag=C9F05_00010;partial=true
NZ_PYKE01000002.1	Protein Homology	CDS	50	701	.	+	0	ID=cds-WP_135369897.1;Parent=gene-C9F05_RS00010;Dbxref=GenBank:WP_135369897.1;Name=WP_135369897.1;end_range=701,.;gbkey=CDS;gene=waaZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462615.1;locus_tag=C9F05_RS00010;partial=true;product=3-deoxy-D-manno-oct-2-ulosonate III transferase WaaZ;protein_id=WP_135369897.1;transl_table=11
##sequence-region NZ_PYKE01000166.1 1 699
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000166.1	RefSeq	region	1	699	.	+	.	ID=NZ_PYKE01000166.1:1..699;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000166.1	RefSeq	pseudogene	358	699	.	-	.	ID=gene-C9F05_RS11555;Name=C9F05_RS11555;end_range=699,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS11555;old_locus_tag=C9F05_11880;partial=true;pseudo=true
NZ_PYKE01000166.1	Protein Homology	CDS	358	699	.	-	0	ID=cds-C9F05_RS11555;Parent=gene-C9F05_RS11555;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=699,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460656.1;locus_tag=C9F05_RS11555;partial=true;product=Secreted effector kinase SteC;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000035.1 1 19020
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000035.1	RefSeq	region	1	19020	.	+	.	ID=NZ_PYKE01000035.1:1..19020;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000035.1	RefSeq	gene	23	313	.	-	.	ID=gene-C9F05_RS02035;Name=C9F05_RS02035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02035;old_locus_tag=C9F05_02075
NZ_PYKE01000035.1	Protein Homology	CDS	23	313	.	-	0	ID=cds-WP_135369981.1;Parent=gene-C9F05_RS02035;Dbxref=GenBank:WP_135369981.1;Name=WP_135369981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463062.1;locus_tag=C9F05_RS02035;product=hypothetical protein;protein_id=WP_135369981.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	565	1020	.	-	.	ID=gene-C9F05_RS02040;Name=C9F05_RS02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02040;old_locus_tag=C9F05_02080
NZ_PYKE01000035.1	Protein Homology	CDS	565	1020	.	-	0	ID=cds-WP_023203255.1;Parent=gene-C9F05_RS02040;Dbxref=GenBank:WP_023203255.1;Name=WP_023203255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463063.1;locus_tag=C9F05_RS02040;product=hypothetical protein;protein_id=WP_023203255.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	1017	1622	.	-	.	ID=gene-C9F05_RS02045;Name=C9F05_RS02045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02045;old_locus_tag=C9F05_02085
NZ_PYKE01000035.1	Protein Homology	CDS	1017	1622	.	-	0	ID=cds-WP_135369982.1;Parent=gene-C9F05_RS02045;Dbxref=GenBank:WP_135369982.1;Name=WP_135369982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463064.1;locus_tag=C9F05_RS02045;product=DUF4376 domain-containing protein;protein_id=WP_135369982.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	1627	3396	.	-	.	ID=gene-C9F05_RS02050;Name=C9F05_RS02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02050;old_locus_tag=C9F05_02090
NZ_PYKE01000035.1	Protein Homology	CDS	1627	3396	.	-	0	ID=cds-WP_135369983.1;Parent=gene-C9F05_RS02050;Dbxref=GenBank:WP_135369983.1;Name=WP_135369983.1;Ontology_term=GO:0019062,GO:0046718;gbkey=CDS;go_process=virion attachment to host cell|0019062||IEA,symbiont entry into host cell|0046718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894561.1;locus_tag=C9F05_RS02050;product=tail fiber protein;protein_id=WP_135369983.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	3399	4031	.	-	.	ID=gene-C9F05_RS02055;Name=C9F05_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02055;old_locus_tag=C9F05_02095
NZ_PYKE01000035.1	Protein Homology	CDS	3399	4031	.	-	0	ID=cds-WP_000359503.1;Parent=gene-C9F05_RS02055;Dbxref=GenBank:WP_000359503.1;Name=WP_000359503.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463066.1;locus_tag=C9F05_RS02055;product=phage tail protein I;protein_id=WP_000359503.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	4024	5139	.	-	.	ID=gene-C9F05_RS02060;Name=C9F05_RS02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02060;old_locus_tag=C9F05_02100
NZ_PYKE01000035.1	Protein Homology	CDS	4024	5139	.	-	0	ID=cds-WP_135369984.1;Parent=gene-C9F05_RS02060;Dbxref=GenBank:WP_135369984.1;Name=WP_135369984.1;Ontology_term=GO:0098045,GO:0098025;gbkey=CDS;go_component=virus tail%2C baseplate|0098025||IEA;go_process=virus baseplate assembly|0098045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463067.1;locus_tag=C9F05_RS02060;product=baseplate assembly protein;protein_id=WP_135369984.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	5130	5489	.	-	.	ID=gene-C9F05_RS02065;Name=C9F05_RS02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02065;old_locus_tag=C9F05_02105
NZ_PYKE01000035.1	Protein Homology	CDS	5130	5489	.	-	0	ID=cds-WP_001093502.1;Parent=gene-C9F05_RS02065;Dbxref=GenBank:WP_001093502.1;Name=WP_001093502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463068.1;locus_tag=C9F05_RS02065;product=GPW/gp25 family protein;protein_id=WP_001093502.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	5653	7200	.	-	.	ID=gene-C9F05_RS02070;Name=C9F05_RS02070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02070;old_locus_tag=C9F05_02110
NZ_PYKE01000035.1	Protein Homology	CDS	5653	7200	.	-	0	ID=cds-WP_135369985.1;Parent=gene-C9F05_RS02070;Dbxref=GenBank:WP_135369985.1;Name=WP_135369985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463069.1;locus_tag=C9F05_RS02070;product=DUF6056 family protein;protein_id=WP_135369985.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	7200	8129	.	-	.	ID=gene-C9F05_RS02075;Name=C9F05_RS02075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02075;old_locus_tag=C9F05_02115
NZ_PYKE01000035.1	Protein Homology	CDS	7200	8129	.	-	0	ID=cds-WP_023137582.1;Parent=gene-C9F05_RS02075;Dbxref=GenBank:WP_023137582.1;Name=WP_023137582.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463070.1;locus_tag=C9F05_RS02075;product=glycosyltransferase family 2 protein;protein_id=WP_023137582.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	8126	8488	.	-	.	ID=gene-C9F05_RS02080;Name=C9F05_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02080;old_locus_tag=C9F05_02120
NZ_PYKE01000035.1	Protein Homology	CDS	8126	8488	.	-	0	ID=cds-WP_000593184.1;Parent=gene-C9F05_RS02080;Dbxref=GenBank:WP_000593184.1;Name=WP_000593184.1;Ontology_term=GO:0000271,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463071.1;locus_tag=C9F05_RS02080;product=GtrA family protein;protein_id=WP_000593184.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	8815	9537	.	-	.	ID=gene-C9F05_RS02090;Name=C9F05_RS02090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02090;old_locus_tag=C9F05_02130
NZ_PYKE01000035.1	Protein Homology	CDS	8815	9537	.	-	0	ID=cds-WP_135369986.1;Parent=gene-C9F05_RS02090;Dbxref=GenBank:WP_135369986.1;Name=WP_135369986.1;Ontology_term=GO:0098003,GO:0046872,GO:0098025;gbkey=CDS;go_component=virus tail%2C baseplate|0098025||IEA;go_function=metal ion binding|0046872||IEA;go_process=viral tail assembly|0098003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463072.1;locus_tag=C9F05_RS02090;product=phage baseplate assembly protein V;protein_id=WP_135369986.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	9547	10590	.	-	.	ID=gene-C9F05_RS02095;Name=C9F05_RS02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02095;old_locus_tag=C9F05_02135
NZ_PYKE01000035.1	Protein Homology	CDS	9547	10590	.	-	0	ID=cds-WP_135369987.1;Parent=gene-C9F05_RS02095;Dbxref=GenBank:WP_135369987.1;Name=WP_135369987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463073.1;locus_tag=C9F05_RS02095;product=phage late control D family protein;protein_id=WP_135369987.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	10578	10787	.	-	.	ID=gene-C9F05_RS02100;Name=C9F05_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02100;old_locus_tag=C9F05_02140
NZ_PYKE01000035.1	Protein Homology	CDS	10578	10787	.	-	0	ID=cds-WP_001269716.1;Parent=gene-C9F05_RS02100;Dbxref=GenBank:WP_001269716.1;Name=WP_001269716.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463074.1;locus_tag=C9F05_RS02100;product=tail protein X;protein_id=WP_001269716.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	10787	11740	.	-	.	ID=gene-C9F05_RS02105;Name=C9F05_RS02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02105;old_locus_tag=C9F05_02145
NZ_PYKE01000035.1	Protein Homology	CDS	10787	11740	.	-	0	ID=cds-WP_000271425.1;Parent=gene-C9F05_RS02105;Dbxref=GenBank:WP_000271425.1;Name=WP_000271425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463075.1;locus_tag=C9F05_RS02105;product=phage tail protein;protein_id=WP_000271425.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	11740	14094	.	-	.	ID=gene-C9F05_RS02110;Name=C9F05_RS02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02110;old_locus_tag=C9F05_02150
NZ_PYKE01000035.1	Protein Homology	CDS	11740	14094	.	-	0	ID=cds-WP_135369988.1;Parent=gene-C9F05_RS02110;Dbxref=GenBank:WP_135369988.1;Name=WP_135369988.1;Ontology_term=GO:0016032,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463076.1;locus_tag=C9F05_RS02110;product=phage tail tape measure protein;protein_id=WP_135369988.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	14188	14316	.	-	.	ID=gene-C9F05_RS24000;Name=C9F05_RS24000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24000;old_locus_tag=C9F05_02155
NZ_PYKE01000035.1	Protein Homology	CDS	14188	14316	.	-	0	ID=cds-WP_135369989.1;Parent=gene-C9F05_RS24000;Dbxref=GenBank:WP_135369989.1;Name=WP_135369989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001728452.1;locus_tag=C9F05_RS24000;product=GpE family phage tail protein;protein_id=WP_135369989.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	14276	14593	.	-	.	ID=gene-C9F05_RS02120;Name=C9F05_RS02120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02120;old_locus_tag=C9F05_02160
NZ_PYKE01000035.1	Protein Homology	CDS	14276	14593	.	-	0	ID=cds-WP_001003640.1;Parent=gene-C9F05_RS02120;Dbxref=GenBank:WP_001003640.1;Name=WP_001003640.1;Ontology_term=GO:0098003;gbkey=CDS;go_process=viral tail assembly|0098003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001003637.1;locus_tag=C9F05_RS02120;product=phage tail assembly protein;protein_id=WP_001003640.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	14645	15169	.	-	.	ID=gene-C9F05_RS02125;Name=C9F05_RS02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02125;old_locus_tag=C9F05_02165
NZ_PYKE01000035.1	Protein Homology	CDS	14645	15169	.	-	0	ID=cds-WP_135369990.1;Parent=gene-C9F05_RS02125;Dbxref=GenBank:WP_135369990.1;Name=WP_135369990.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463077.1;locus_tag=C9F05_RS02125;product=phage major tail tube protein;protein_id=WP_135369990.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	15169	16596	.	-	.	ID=gene-C9F05_RS02130;Name=C9F05_RS02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02130;old_locus_tag=C9F05_02170
NZ_PYKE01000035.1	Protein Homology	CDS	15169	16596	.	-	0	ID=cds-WP_135369991.1;Parent=gene-C9F05_RS02130;Dbxref=GenBank:WP_135369991.1;Name=WP_135369991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463078.1;locus_tag=C9F05_RS02130;product=phage tail sheath subtilisin-like domain-containing protein;protein_id=WP_135369991.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	16586	16783	.	-	.	ID=gene-C9F05_RS02135;Name=C9F05_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02135;old_locus_tag=C9F05_02175
NZ_PYKE01000035.1	Protein Homology	CDS	16586	16783	.	-	0	ID=cds-WP_080212881.1;Parent=gene-C9F05_RS02135;Dbxref=GenBank:WP_080212881.1;Name=WP_080212881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463079.1;locus_tag=C9F05_RS02135;product=hypothetical protein;protein_id=WP_080212881.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	16780	17235	.	-	.	ID=gene-C9F05_RS02140;Name=C9F05_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02140;old_locus_tag=C9F05_02180
NZ_PYKE01000035.1	Protein Homology	CDS	16780	17235	.	-	0	ID=cds-WP_135369992.1;Parent=gene-C9F05_RS02140;Dbxref=GenBank:WP_135369992.1;Name=WP_135369992.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463080.1;locus_tag=C9F05_RS02140;product=Gp37 family protein;protein_id=WP_135369992.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	17395	17709	.	-	.	ID=gene-C9F05_RS02145;Name=C9F05_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02145;old_locus_tag=C9F05_02185
NZ_PYKE01000035.1	Protein Homology	CDS	17395	17709	.	-	0	ID=cds-WP_000777266.1;Parent=gene-C9F05_RS02145;Dbxref=GenBank:WP_000777266.1;Name=WP_000777266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463081.1;locus_tag=C9F05_RS02145;product=membrane protein;protein_id=WP_000777266.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	17722	18327	.	-	.	ID=gene-C9F05_RS02150;Name=C9F05_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02150;old_locus_tag=C9F05_02190
NZ_PYKE01000035.1	Protein Homology	CDS	17722	18327	.	-	0	ID=cds-WP_001270438.1;Parent=gene-C9F05_RS02150;Dbxref=GenBank:WP_001270438.1;Name=WP_001270438.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463082.1;locus_tag=C9F05_RS02150;product=lytic transglycosylase domain-containing protein;protein_id=WP_001270438.1;transl_table=11
NZ_PYKE01000035.1	RefSeq	gene	18330	18617	.	-	.	ID=gene-C9F05_RS02155;Name=C9F05_RS02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02155;old_locus_tag=C9F05_02195
NZ_PYKE01000035.1	Protein Homology	CDS	18330	18617	.	-	0	ID=cds-WP_001226440.1;Parent=gene-C9F05_RS02155;Dbxref=GenBank:WP_001226440.1;Name=WP_001226440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463083.1;locus_tag=C9F05_RS02155;product=putative holin;protein_id=WP_001226440.1;transl_table=11
##sequence-region NZ_PYKE01000019.1 1 680
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000019.1	RefSeq	region	1	680	.	+	.	ID=NZ_PYKE01000019.1:1..680;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000019.1	RefSeq	gene	1	584	.	+	.	ID=gene-C9F05_RS00845;Name=rfaY;gbkey=Gene;gene=rfaY;gene_biotype=protein_coding;locus_tag=C9F05_RS00845;old_locus_tag=C9F05_00855;partial=true;start_range=.,1
NZ_PYKE01000019.1	Protein Homology	CDS	1	584	.	+	2	ID=cds-WP_135369937.1;Parent=gene-C9F05_RS00845;Dbxref=GenBank:WP_135369937.1;Name=WP_135369937.1;gbkey=CDS;gene=rfaY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462616.1;locus_tag=C9F05_RS00845;partial=true;product=lipopolysaccharide core heptose(II) kinase RfaY;protein_id=WP_135369937.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000117.1 1 19016
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000117.1	RefSeq	region	1	19016	.	+	.	ID=NZ_PYKE01000117.1:1..19016;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000117.1	RefSeq	gene	336	899	.	+	.	ID=gene-C9F05_RS08555;Name=pagL;gbkey=Gene;gene=pagL;gene_biotype=protein_coding;locus_tag=C9F05_RS08555;old_locus_tag=C9F05_08770
NZ_PYKE01000117.1	Protein Homology	CDS	336	899	.	+	0	ID=cds-WP_000281868.1;Parent=gene-C9F05_RS08555;Dbxref=GenBank:WP_000281868.1;Name=WP_000281868.1;gbkey=CDS;gene=pagL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461188.1;locus_tag=C9F05_RS08555;product=lipid A 3-O-deacylase PagL;protein_id=WP_000281868.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	1092	1295	.	-	.	ID=gene-C9F05_RS08560;Name=C9F05_RS08560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08560;old_locus_tag=C9F05_08775
NZ_PYKE01000117.1	Protein Homology	CDS	1092	1295	.	-	0	ID=cds-WP_115409496.1;Parent=gene-C9F05_RS08560;Dbxref=GenBank:WP_115409496.1;Name=WP_115409496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461187.1;locus_tag=C9F05_RS08560;product=DinI-like family protein;protein_id=WP_115409496.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	pseudogene	1289	1381	.	-	.	ID=gene-C9F05_RS23775;Name=C9F05_RS23775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23775;partial=true;pseudo=true;start_range=.,1289
NZ_PYKE01000117.1	Protein Homology	CDS	1289	1381	.	-	0	ID=cds-C9F05_RS23775;Parent=gene-C9F05_RS23775;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460028.1;locus_tag=C9F05_RS23775;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1289;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	1337	1413	.	-	.	ID=gene-C9F05_RS08565;Name=C9F05_RS08565;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS08565;old_locus_tag=C9F05_08780
NZ_PYKE01000117.1	tRNAscan-SE	tRNA	1337	1413	.	-	.	ID=rna-C9F05_RS08565;Parent=gene-C9F05_RS08565;anticodon=(pos:complement(1377..1379));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS08565;product=tRNA-Pro
NZ_PYKE01000117.1	tRNAscan-SE	exon	1337	1413	.	-	.	ID=exon-C9F05_RS08565-1;Parent=rna-C9F05_RS08565;anticodon=(pos:complement(1377..1379));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS08565;product=tRNA-Pro
NZ_PYKE01000117.1	RefSeq	gene	1487	3247	.	-	.	ID=gene-C9F05_RS08570;Name=yejM;gbkey=Gene;gene=yejM;gene_biotype=protein_coding;locus_tag=C9F05_RS08570;old_locus_tag=C9F05_08785
NZ_PYKE01000117.1	Protein Homology	CDS	1487	3247	.	-	0	ID=cds-WP_000256153.1;Parent=gene-C9F05_RS08570;Dbxref=GenBank:WP_000256153.1;Name=WP_000256153.1;Ontology_term=GO:0008484;gbkey=CDS;gene=yejM;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461172.1;locus_tag=C9F05_RS08570;product=LPS biosynthesis-modulating metalloenzyme YejM;protein_id=WP_000256153.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	3279	3506	.	-	.	ID=gene-C9F05_RS08575;Name=C9F05_RS08575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08575;old_locus_tag=C9F05_08790
NZ_PYKE01000117.1	Protein Homology	CDS	3279	3506	.	-	0	ID=cds-WP_001135904.1;Parent=gene-C9F05_RS08575;Dbxref=GenBank:WP_001135904.1;Name=WP_001135904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461171.1;locus_tag=C9F05_RS08575;product=YejL family protein;protein_id=WP_001135904.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	3686	4693	.	+	.	ID=gene-C9F05_RS08580;Name=yejK;gbkey=Gene;gene=yejK;gene_biotype=protein_coding;locus_tag=C9F05_RS08580;old_locus_tag=C9F05_08795
NZ_PYKE01000117.1	Protein Homology	CDS	3686	4693	.	+	0	ID=cds-WP_045900582.1;Parent=gene-C9F05_RS08580;Dbxref=GenBank:WP_045900582.1;Name=WP_045900582.1;Ontology_term=GO:0009295;gbkey=CDS;gene=yejK;go_component=nucleoid|0009295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461170.1;locus_tag=C9F05_RS08580;product=nucleoid-associated protein YejK;protein_id=WP_045900582.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	4721	5341	.	+	.	ID=gene-C9F05_RS08585;Name=C9F05_RS08585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08585;old_locus_tag=C9F05_08800
NZ_PYKE01000117.1	Protein Homology	CDS	4721	5341	.	+	0	ID=cds-WP_000033432.1;Parent=gene-C9F05_RS08585;Dbxref=GenBank:WP_000033432.1;Name=WP_000033432.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461169.1;locus_tag=C9F05_RS08585;product=hypothetical protein;protein_id=WP_000033432.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	5450	5734	.	-	.	ID=gene-C9F05_RS08590;Name=rplY;gbkey=Gene;gene=rplY;gene_biotype=protein_coding;locus_tag=C9F05_RS08590;old_locus_tag=C9F05_08805
NZ_PYKE01000117.1	Protein Homology	CDS	5450	5734	.	-	0	ID=cds-WP_000494192.1;Parent=gene-C9F05_RS08590;Dbxref=GenBank:WP_000494192.1;Name=WP_000494192.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplY;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000494192.1;locus_tag=C9F05_RS08590;product=50S ribosomal protein L25;protein_id=WP_000494192.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	5859	7619	.	-	.	ID=gene-C9F05_RS08595;Name=C9F05_RS08595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08595;old_locus_tag=C9F05_08810
NZ_PYKE01000117.1	Protein Homology	CDS	5859	7619	.	-	0	ID=cds-WP_000578121.1;Parent=gene-C9F05_RS08595;Dbxref=GenBank:WP_000578121.1;Name=WP_000578121.1;Ontology_term=GO:0003676,GO:0004386,GO:0005524,GO:0016887;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461167.1;locus_tag=C9F05_RS08595;product=DEAD/DEAH box helicase;protein_id=WP_000578121.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	7771	8466	.	+	.	ID=gene-C9F05_RS08600;Name=rsuA;gbkey=Gene;gene=rsuA;gene_biotype=protein_coding;locus_tag=C9F05_RS08600;old_locus_tag=C9F05_08815
NZ_PYKE01000117.1	Protein Homology	CDS	7771	8466	.	+	0	ID=cds-WP_001234836.1;Parent=gene-C9F05_RS08600;Dbxref=GenBank:WP_001234836.1;Name=WP_001234836.1;gbkey=CDS;gene=rsuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461166.1;locus_tag=C9F05_RS08600;product=16S rRNA pseudouridine(516) synthase RsuA;protein_id=WP_001234836.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	8494	9684	.	+	.	ID=gene-C9F05_RS08605;Name=C9F05_RS08605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08605;old_locus_tag=C9F05_08820
NZ_PYKE01000117.1	Protein Homology	CDS	8494	9684	.	+	0	ID=cds-WP_000213349.1;Parent=gene-C9F05_RS08605;Dbxref=GenBank:WP_000213349.1;Name=WP_000213349.1;Ontology_term=GO:0042908,GO:1990961,GO:0042910,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic transport|0042908||IEA,xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461165.1;locus_tag=C9F05_RS08605;product=Bcr/CflA family multidrug efflux MFS transporter;protein_id=WP_000213349.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	10075	10419	.	+	.	ID=gene-C9F05_RS08610;Name=C9F05_RS08610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08610;old_locus_tag=C9F05_08830
NZ_PYKE01000117.1	Protein Homology	CDS	10075	10419	.	+	0	ID=cds-WP_001094639.1;Parent=gene-C9F05_RS08610;Dbxref=GenBank:WP_001094639.1;Name=WP_001094639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461164.1;locus_tag=C9F05_RS08610;product=YejG family protein;protein_id=WP_001094639.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	10423	12012	.	-	.	ID=gene-C9F05_RS08615;Name=yejF;gbkey=Gene;gene=yejF;gene_biotype=protein_coding;locus_tag=C9F05_RS08615;old_locus_tag=C9F05_08835
NZ_PYKE01000117.1	Protein Homology	CDS	10423	12012	.	-	0	ID=cds-WP_135370183.1;Parent=gene-C9F05_RS08615;Dbxref=GenBank:WP_135370183.1;Name=WP_135370183.1;Ontology_term=GO:0006810,GO:0000166,GO:0005524;gbkey=CDS;gene=yejF;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461163.1;locus_tag=C9F05_RS08615;product=microcin C ABC transporter ATP-binding protein YejF;protein_id=WP_135370183.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	12014	13039	.	-	.	ID=gene-C9F05_RS08620;Name=C9F05_RS08620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08620;old_locus_tag=C9F05_08840
NZ_PYKE01000117.1	Protein Homology	CDS	12014	13039	.	-	0	ID=cds-WP_001137761.1;Parent=gene-C9F05_RS08620;Dbxref=GenBank:WP_001137761.1;Name=WP_001137761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461162.1;locus_tag=C9F05_RS08620;product=ABC transporter permease;protein_id=WP_001137761.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	13039	14133	.	-	.	ID=gene-C9F05_RS08625;Name=C9F05_RS08625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08625;old_locus_tag=C9F05_08845
NZ_PYKE01000117.1	Protein Homology	CDS	13039	14133	.	-	0	ID=cds-WP_000501623.1;Parent=gene-C9F05_RS08625;Dbxref=GenBank:WP_000501623.1;Name=WP_000501623.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461161.1;locus_tag=C9F05_RS08625;product=microcin C ABC transporter permease YejB;protein_id=WP_000501623.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	14143	15948	.	-	.	ID=gene-C9F05_RS08630;Name=C9F05_RS08630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08630;old_locus_tag=C9F05_08850
NZ_PYKE01000117.1	Protein Homology	CDS	14143	15948	.	-	0	ID=cds-WP_000561742.1;Parent=gene-C9F05_RS08630;Dbxref=GenBank:WP_000561742.1;Name=WP_000561742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461160.1;locus_tag=C9F05_RS08630;product=extracellular solute-binding protein;protein_id=WP_000561742.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	16055	17611	.	-	.	ID=gene-C9F05_RS08635;Name=C9F05_RS08635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08635;old_locus_tag=C9F05_08855
NZ_PYKE01000117.1	Protein Homology	CDS	16055	17611	.	-	0	ID=cds-WP_135370184.1;Parent=gene-C9F05_RS08635;Dbxref=GenBank:WP_135370184.1;Name=WP_135370184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461159.1;locus_tag=C9F05_RS08635;product=cyclic di-GMP phosphodiesterase;protein_id=WP_135370184.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	gene	17937	18509	.	-	.	ID=gene-C9F05_RS08640;Name=mepS;gbkey=Gene;gene=mepS;gene_biotype=protein_coding;locus_tag=C9F05_RS08640;old_locus_tag=C9F05_08865
NZ_PYKE01000117.1	Protein Homology	CDS	17937	18509	.	-	0	ID=cds-WP_000241015.1;Parent=gene-C9F05_RS08640;Dbxref=GenBank:WP_000241015.1;Name=WP_000241015.1;gbkey=CDS;gene=mepS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461158.1;locus_tag=C9F05_RS08640;product=bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase;protein_id=WP_000241015.1;transl_table=11
NZ_PYKE01000117.1	RefSeq	pseudogene	18923	19016	.	-	.	ID=gene-C9F05_RS23780;Name=C9F05_RS23780;end_range=19016,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23780;partial=true;pseudo=true
NZ_PYKE01000117.1	Protein Homology	CDS	18923	19016	.	-	1	ID=cds-C9F05_RS23780;Parent=gene-C9F05_RS23780;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=19016,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461157.1;locus_tag=C9F05_RS23780;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000101.1 1 18974
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000101.1	RefSeq	region	1	18974	.	+	.	ID=NZ_PYKE01000101.1:1..18974;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000101.1	RefSeq	gene	432	764	.	-	.	ID=gene-C9F05_RS07415;Name=C9F05_RS07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07415;old_locus_tag=C9F05_07565
NZ_PYKE01000101.1	Protein Homology	CDS	432	764	.	-	0	ID=cds-WP_080217914.1;Parent=gene-C9F05_RS07415;Dbxref=GenBank:WP_080217914.1;Name=WP_080217914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_449164.1;locus_tag=C9F05_RS07415;product=hypothetical protein;protein_id=WP_080217914.1;transl_table=11
NZ_PYKE01000101.1	RefSeq	gene	939	1991	.	-	.	ID=gene-C9F05_RS07420;Name=pipB2;gbkey=Gene;gene=pipB2;gene_biotype=protein_coding;locus_tag=C9F05_RS07420;old_locus_tag=C9F05_07570
NZ_PYKE01000101.1	Protein Homology	CDS	939	1991	.	-	0	ID=cds-WP_135370154.1;Parent=gene-C9F05_RS07420;Dbxref=GenBank:WP_135370154.1;Name=WP_135370154.1;gbkey=CDS;gene=pipB2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461706.1;locus_tag=C9F05_RS07420;product=type III secretion system effector PipB2;protein_id=WP_135370154.1;transl_table=11
NZ_PYKE01000101.1	RefSeq	pseudogene	2359	2445	.	-	.	ID=gene-C9F05_RS07425;Name=C9F05_RS07425;end_range=2445,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS07425;old_locus_tag=C9F05_07580;partial=true;pseudo=true
NZ_PYKE01000101.1	Protein Homology	CDS	2359	2445	.	-	0	ID=cds-C9F05_RS07425;Parent=gene-C9F05_RS07425;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2445,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477181.1;locus_tag=C9F05_RS07425;partial=true;product=IS1 family transposase;pseudo=true;transl_table=11
NZ_PYKE01000101.1	RefSeq	gene	2460	9770	.	-	.	ID=gene-C9F05_RS07430;Name=ratB;gbkey=Gene;gene=ratB;gene_biotype=protein_coding;locus_tag=C9F05_RS07430;old_locus_tag=C9F05_07585
NZ_PYKE01000101.1	Protein Homology	CDS	2460	9770	.	-	0	ID=cds-WP_135370155.1;Parent=gene-C9F05_RS07430;Dbxref=GenBank:WP_135370155.1;Name=WP_135370155.1;gbkey=CDS;gene=ratB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461449.1;locus_tag=C9F05_RS07430;product=DUF823/DUF824 repeat adhesin RatB;protein_id=WP_135370155.1;transl_table=11
NZ_PYKE01000101.1	RefSeq	gene	9936	15539	.	-	.	ID=gene-C9F05_RS07435;Name=ratA;gbkey=Gene;gene=ratA;gene_biotype=protein_coding;locus_tag=C9F05_RS07435;old_locus_tag=C9F05_07590
NZ_PYKE01000101.1	Protein Homology	CDS	9936	15539	.	-	0	ID=cds-WP_135370156.1;Parent=gene-C9F05_RS07435;Dbxref=GenBank:WP_135370156.1;Name=WP_135370156.1;gbkey=CDS;gene=ratA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461450.1;locus_tag=C9F05_RS07435;product=DUF823/DUF824 repeat adhesin RatA;protein_id=WP_135370156.1;transl_table=11
NZ_PYKE01000101.1	RefSeq	gene	15659	16630	.	-	.	ID=gene-C9F05_RS07440;Name=C9F05_RS07440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07440;old_locus_tag=C9F05_07595
NZ_PYKE01000101.1	Protein Homology	CDS	15659	16630	.	-	0	ID=cds-WP_135370157.1;Parent=gene-C9F05_RS07440;Dbxref=GenBank:WP_135370157.1;Name=WP_135370157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461451.1;locus_tag=C9F05_RS07440;product=SinI family autotransporter-associated protein;protein_id=WP_135370157.1;transl_table=11
NZ_PYKE01000101.1	RefSeq	gene	16688	18880	.	-	.	ID=gene-C9F05_RS07445;Name=sinH;gbkey=Gene;gene=sinH;gene_biotype=protein_coding;locus_tag=C9F05_RS07445;old_locus_tag=C9F05_07600
NZ_PYKE01000101.1	Protein Homology	CDS	16688	18880	.	-	0	ID=cds-WP_000252220.1;Parent=gene-C9F05_RS07445;Dbxref=GenBank:WP_000252220.1;Name=WP_000252220.1;gbkey=CDS;gene=sinH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461452.1;locus_tag=C9F05_RS07445;product=intimin-like inverse autotransporter SinH;protein_id=WP_000252220.1;transl_table=11
##sequence-region NZ_PYKE01000025.1 1 646
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000025.1	RefSeq	region	1	646	.	+	.	ID=NZ_PYKE01000025.1:1..646;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000025.1	RefSeq	pseudogene	1	620	.	-	.	ID=gene-C9F05_RS01030;Name=siiD;gbkey=Gene;gene=siiD;gene_biotype=pseudogene;locus_tag=C9F05_RS01030;old_locus_tag=C9F05_01040;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000025.1	Protein Homology	CDS	1	620	.	-	0	ID=cds-C9F05_RS01030;Parent=gene-C9F05_RS01030;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=siiD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463125.1;locus_tag=C9F05_RS01030;partial=true;product=SPI-4 type I secretion system protein SiiD;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000134.1 1 639
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000134.1	RefSeq	region	1	639	.	+	.	ID=NZ_PYKE01000134.1:1..639;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000134.1	RefSeq	gene	1	639	.	-	.	ID=gene-C9F05_RS09780;Name=C9F05_RS09780;end_range=639,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09780;old_locus_tag=C9F05_10025;partial=true;start_range=.,1
NZ_PYKE01000134.1	Protein Homology	CDS	1	639	.	-	2	ID=cds-WP_167854902.1;Parent=gene-C9F05_RS09780;Dbxref=GenBank:WP_167854902.1;Name=WP_167854902.1;Ontology_term=GO:0016787;end_range=639,.;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9F05_RS09780;partial=true;product=amidohydrolase family protein;protein_id=WP_167854902.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000286.1 1 18889
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000286.1	RefSeq	region	1	18889	.	+	.	ID=NZ_PYKE01000286.1:1..18889;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000286.1	RefSeq	gene	165	347	.	+	.	ID=gene-C9F05_RS18880;Name=C9F05_RS18880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18880;old_locus_tag=C9F05_19420
NZ_PYKE01000286.1	Protein Homology	CDS	165	347	.	+	0	ID=cds-WP_000807657.1;Parent=gene-C9F05_RS18880;Dbxref=GenBank:WP_000807657.1;Name=WP_000807657.1;Ontology_term=GO:0006950;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460687.1;locus_tag=C9F05_RS18880;product=general stress protein;protein_id=WP_000807657.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	437	940	.	+	.	ID=gene-C9F05_RS18885;Name=C9F05_RS18885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18885;old_locus_tag=C9F05_19425
NZ_PYKE01000286.1	Protein Homology	CDS	437	940	.	+	0	ID=cds-WP_001022822.1;Parent=gene-C9F05_RS18885;Dbxref=GenBank:WP_001022822.1;Name=WP_001022822.1;Ontology_term=GO:0004322,GO:0005506,GO:0046872;gbkey=CDS;go_function=ferroxidase activity|0004322||IEA,iron ion binding|0005506||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460688.1;locus_tag=C9F05_RS18885;product=YciE/YciF ferroxidase family protein;protein_id=WP_001022822.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	1014	1520	.	+	.	ID=gene-C9F05_RS18890;Name=C9F05_RS18890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18890;old_locus_tag=C9F05_19430
NZ_PYKE01000286.1	Protein Homology	CDS	1014	1520	.	+	0	ID=cds-WP_001109977.1;Parent=gene-C9F05_RS18890;Dbxref=GenBank:WP_001109977.1;Name=WP_001109977.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460689.1;locus_tag=C9F05_RS18890;product=ferritin-like domain-containing protein;protein_id=WP_001109977.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	1540	2418	.	+	.	ID=gene-C9F05_RS18895;Name=C9F05_RS18895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18895;old_locus_tag=C9F05_19435
NZ_PYKE01000286.1	Protein Homology	CDS	1540	2418	.	+	0	ID=cds-WP_000488348.1;Parent=gene-C9F05_RS18895;Dbxref=GenBank:WP_000488348.1;Name=WP_000488348.1;Ontology_term=GO:0004096,GO:0046872;gbkey=CDS;go_function=catalase activity|0004096||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460690.1;locus_tag=C9F05_RS18895;product=manganese catalase family protein;protein_id=WP_000488348.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	2500	3138	.	-	.	ID=gene-C9F05_RS18900;Name=ompW;gbkey=Gene;gene=ompW;gene_biotype=protein_coding;locus_tag=C9F05_RS18900;old_locus_tag=C9F05_19440
NZ_PYKE01000286.1	Protein Homology	CDS	2500	3138	.	-	0	ID=cds-WP_000714798.1;Parent=gene-C9F05_RS18900;Dbxref=GenBank:WP_000714798.1;Name=WP_000714798.1;Ontology_term=GO:0019867;gbkey=CDS;gene=ompW;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460691.1;locus_tag=C9F05_RS18900;product=outer membrane protein OmpW;protein_id=WP_000714798.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	3475	3879	.	+	.	ID=gene-C9F05_RS18905;Name=C9F05_RS18905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18905;old_locus_tag=C9F05_19445
NZ_PYKE01000286.1	Protein Homology	CDS	3475	3879	.	+	0	ID=cds-WP_000114955.1;Parent=gene-C9F05_RS18905;Dbxref=GenBank:WP_000114955.1;Name=WP_000114955.1;Ontology_term=GO:0046872,GO:0051536;gbkey=CDS;go_function=metal ion binding|0046872||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460692.1;locus_tag=C9F05_RS18905;product=YkgJ family cysteine cluster protein;protein_id=WP_000114955.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	3905	4648	.	+	.	ID=gene-C9F05_RS18910;Name=C9F05_RS18910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18910;old_locus_tag=C9F05_19450
NZ_PYKE01000286.1	Protein Homology	CDS	3905	4648	.	+	0	ID=cds-WP_000028507.1;Parent=gene-C9F05_RS18910;Dbxref=GenBank:WP_000028507.1;Name=WP_000028507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460693.1;locus_tag=C9F05_RS18910;product=YciC family protein;protein_id=WP_000028507.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	4705	5244	.	+	.	ID=gene-C9F05_RS18915;Name=C9F05_RS18915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18915;old_locus_tag=C9F05_19455
NZ_PYKE01000286.1	Protein Homology	CDS	4705	5244	.	+	0	ID=cds-WP_000808682.1;Parent=gene-C9F05_RS18915;Dbxref=GenBank:WP_000808682.1;Name=WP_000808682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460694.1;locus_tag=C9F05_RS18915;product=septation protein A;protein_id=WP_000808682.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	5405	5806	.	+	.	ID=gene-C9F05_RS18920;Name=yciA;gbkey=Gene;gene=yciA;gene_biotype=protein_coding;locus_tag=C9F05_RS18920;old_locus_tag=C9F05_19460
NZ_PYKE01000286.1	Protein Homology	CDS	5405	5806	.	+	0	ID=cds-WP_000210317.1;Parent=gene-C9F05_RS18920;Dbxref=GenBank:WP_000210317.1;Name=WP_000210317.1;Ontology_term=GO:0016790;gbkey=CDS;gene=yciA;go_function=thiolester hydrolase activity|0016790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460695.1;locus_tag=C9F05_RS18920;product=acyl-CoA thioester hydrolase YciA;protein_id=WP_000210317.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	5866	6594	.	-	.	ID=gene-C9F05_RS18925;Name=tonB;gbkey=Gene;gene=tonB;gene_biotype=protein_coding;locus_tag=C9F05_RS18925;old_locus_tag=C9F05_19465
NZ_PYKE01000286.1	Protein Homology	CDS	5866	6594	.	-	0	ID=cds-WP_001525247.1;Parent=gene-C9F05_RS18925;Dbxref=GenBank:WP_001525247.1;Name=WP_001525247.1;Ontology_term=GO:0015891,GO:0055085,GO:0015343,GO:0030288;gbkey=CDS;gene=tonB;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=siderophore-iron transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460696.1;locus_tag=C9F05_RS18925;product=TonB system transport protein TonB;protein_id=WP_001525247.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	6818	7114	.	+	.	ID=gene-C9F05_RS18930;Name=C9F05_RS18930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18930;old_locus_tag=C9F05_19470
NZ_PYKE01000286.1	Protein Homology	CDS	6818	7114	.	+	0	ID=cds-WP_000967605.1;Parent=gene-C9F05_RS18930;Dbxref=GenBank:WP_000967605.1;Name=WP_000967605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460697.1;locus_tag=C9F05_RS18930;product=YciI family protein;protein_id=WP_000967605.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	7158	7331	.	-	.	ID=gene-C9F05_RS18935;Name=C9F05_RS18935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18935
NZ_PYKE01000286.1	Protein Homology	CDS	7158	7331	.	-	0	ID=cds-WP_001531561.1;Parent=gene-C9F05_RS18935;Dbxref=GenBank:WP_001531561.1;Name=WP_001531561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165316.1;locus_tag=C9F05_RS18935;product=YciY family protein;protein_id=WP_001531561.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	7474	8934	.	+	.	ID=gene-C9F05_RS18940;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=C9F05_RS18940;old_locus_tag=C9F05_19475
NZ_PYKE01000286.1	Protein Homology	CDS	7474	8934	.	+	0	ID=cds-WP_000206886.1;Parent=gene-C9F05_RS18940;Dbxref=GenBank:WP_000206886.1;Name=WP_000206886.1;Ontology_term=GO:0032049,GO:0008808,GO:0016780;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126413.1;locus_tag=C9F05_RS18940;product=cardiolipin synthase;protein_id=WP_000206886.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	8968	9297	.	+	.	ID=gene-C9F05_RS18945;Name=C9F05_RS18945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18945;old_locus_tag=C9F05_19480
NZ_PYKE01000286.1	Protein Homology	CDS	8968	9297	.	+	0	ID=cds-WP_000425070.1;Parent=gene-C9F05_RS18945;Dbxref=GenBank:WP_000425070.1;Name=WP_000425070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448158.1;locus_tag=C9F05_RS18945;product=HI1450 family dsDNA-mimic protein;protein_id=WP_000425070.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	9345	10181	.	-	.	ID=gene-C9F05_RS18950;Name=C9F05_RS18950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18950;old_locus_tag=C9F05_19485
NZ_PYKE01000286.1	Protein Homology	CDS	9345	10181	.	-	0	ID=cds-WP_135370544.1;Parent=gene-C9F05_RS18950;Dbxref=GenBank:WP_135370544.1;Name=WP_135370544.1;Ontology_term=GO:0006811,GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=monoatomic ion transport|0006811||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460700.1;locus_tag=C9F05_RS18950;product=ion transporter;protein_id=WP_135370544.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	10229	11233	.	-	.	ID=gene-C9F05_RS18955;Name=oppF;gbkey=Gene;gene=oppF;gene_biotype=protein_coding;locus_tag=C9F05_RS18955;old_locus_tag=C9F05_19490
NZ_PYKE01000286.1	Protein Homology	CDS	10229	11233	.	-	0	ID=cds-WP_000994696.1;Parent=gene-C9F05_RS18955;Dbxref=GenBank:WP_000994696.1;Name=WP_000994696.1;gbkey=CDS;gene=oppF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506804.1;locus_tag=C9F05_RS18955;product=murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF;protein_id=WP_000994696.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	11230	12237	.	-	.	ID=gene-C9F05_RS18960;Name=C9F05_RS18960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18960;old_locus_tag=C9F05_19495
NZ_PYKE01000286.1	Protein Homology	CDS	11230	12237	.	-	0	ID=cds-WP_000058857.1;Parent=gene-C9F05_RS18960;Dbxref=GenBank:WP_000058857.1;Name=WP_000058857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460702.1;locus_tag=C9F05_RS18960;product=ABC transporter ATP-binding protein;protein_id=WP_000058857.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	12249	13157	.	-	.	ID=gene-C9F05_RS18965;Name=oppC;gbkey=Gene;gene=oppC;gene_biotype=protein_coding;locus_tag=C9F05_RS18965;old_locus_tag=C9F05_19500
NZ_PYKE01000286.1	Protein Homology	CDS	12249	13157	.	-	0	ID=cds-WP_000979653.1;Parent=gene-C9F05_RS18965;Dbxref=GenBank:WP_000979653.1;Name=WP_000979653.1;Ontology_term=GO:0055085;gbkey=CDS;gene=oppC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000979653.1;locus_tag=C9F05_RS18965;product=oligopeptide ABC transporter permease OppC;protein_id=WP_000979653.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	13172	14092	.	-	.	ID=gene-C9F05_RS18970;Name=oppB;gbkey=Gene;gene=oppB;gene_biotype=protein_coding;locus_tag=C9F05_RS18970;old_locus_tag=C9F05_19505
NZ_PYKE01000286.1	Protein Homology	CDS	13172	14092	.	-	0	ID=cds-WP_000911097.1;Parent=gene-C9F05_RS18970;Dbxref=GenBank:WP_000911097.1;Name=WP_000911097.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=oppB;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126405.1;locus_tag=C9F05_RS18970;product=oligopeptide ABC transporter permease OppB;protein_id=WP_000911097.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	14215	15846	.	-	.	ID=gene-C9F05_RS18975;Name=oppA;gbkey=Gene;gene=oppA;gene_biotype=protein_coding;locus_tag=C9F05_RS18975;old_locus_tag=C9F05_19510
NZ_PYKE01000286.1	Protein Homology	CDS	14215	15846	.	-	0	ID=cds-WP_001527794.1;Parent=gene-C9F05_RS18975;Dbxref=GenBank:WP_001527794.1;Name=WP_001527794.1;Ontology_term=GO:0055085,GO:0043190;gbkey=CDS;gene=oppA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675662.1;locus_tag=C9F05_RS18975;product=oligopeptide ABC transporter substrate-binding protein OppA;protein_id=WP_001527794.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	16610	17257	.	-	.	ID=gene-C9F05_RS18985;Name=C9F05_RS18985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18985;old_locus_tag=C9F05_19520
NZ_PYKE01000286.1	Protein Homology	CDS	16610	17257	.	-	0	ID=cds-WP_000615840.1;Parent=gene-C9F05_RS18985;Dbxref=GenBank:WP_000615840.1;Name=WP_000615840.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460707.1;locus_tag=C9F05_RS18985;product=YchE family NAAT transporter;protein_id=WP_000615840.1;transl_table=11
NZ_PYKE01000286.1	RefSeq	gene	17734	18889	.	+	.	ID=gene-C9F05_RS18990;Name=C9F05_RS18990;end_range=18889,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18990;old_locus_tag=C9F05_19525;partial=true
NZ_PYKE01000286.1	Protein Homology	CDS	17734	18889	.	+	0	ID=cds-WP_133308241.1;Parent=gene-C9F05_RS18990;Dbxref=GenBank:WP_133308241.1;Name=WP_133308241.1;Ontology_term=GO:0016491;end_range=18889,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460708.1;locus_tag=C9F05_RS18990;partial=true;product=aldehyde dehydrogenase family protein;protein_id=WP_133308241.1;transl_table=11
##sequence-region NZ_PYKE01000007.1 1 626
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000007.1	RefSeq	region	1	626	.	+	.	ID=NZ_PYKE01000007.1:1..626;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000007.1	RefSeq	gene	1	504	.	-	.	ID=gene-C9F05_RS00385;Name=C9F05_RS00385;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9F05_RS00385;old_locus_tag=C9F05_00390;partial=true;start_range=.,1
NZ_PYKE01000007.1	cmsearch	rRNA	1	504	.	-	.	ID=rna-C9F05_RS00385;Parent=gene-C9F05_RS00385;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS00385;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYKE01000007.1	cmsearch	exon	1	504	.	-	.	ID=exon-C9F05_RS00385-1;Parent=rna-C9F05_RS00385;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS00385;partial=true;product=23S ribosomal RNA;start_range=.,1
##sequence-region NZ_PYKE01000165.1 1 624
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000165.1	RefSeq	region	1	624	.	+	.	ID=NZ_PYKE01000165.1:1..624;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000165.1	RefSeq	gene	54	302	.	-	.	ID=gene-C9F05_RS11550;Name=C9F05_RS11550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11550;old_locus_tag=C9F05_11875
NZ_PYKE01000165.1	Protein Homology	CDS	54	302	.	-	0	ID=cds-WP_000208086.1;Parent=gene-C9F05_RS11550;Dbxref=GenBank:WP_000208086.1;Name=WP_000208086.1;Ontology_term=GO:0071468,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cellular response to acidic pH|0071468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460233.1;locus_tag=C9F05_RS11550;product=biofilm/acid-resistance regulator YmgB/AriR;protein_id=WP_000208086.1;transl_table=11
NZ_PYKE01000165.1	RefSeq	pseudogene	381	535	.	-	.	ID=gene-C9F05_RS23820;Name=C9F05_RS23820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23820;pseudo=true
NZ_PYKE01000165.1	Protein Homology	CDS	381	535	.	-	0	ID=cds-C9F05_RS23820;Parent=gene-C9F05_RS23820;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460234.1;locus_tag=C9F05_RS23820;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000069.1 1 18880
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000069.1	RefSeq	region	1	18880	.	+	.	ID=NZ_PYKE01000069.1:1..18880;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000069.1	RefSeq	gene	144	872	.	+	.	ID=gene-C9F05_RS04430;Name=C9F05_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04430;old_locus_tag=C9F05_04495
NZ_PYKE01000069.1	Protein Homology	CDS	144	872	.	+	0	ID=cds-WP_023200869.1;Parent=gene-C9F05_RS04430;Dbxref=GenBank:WP_023200869.1;Name=WP_023200869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463061.1;locus_tag=C9F05_RS04430;product=hypothetical protein;protein_id=WP_023200869.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	1134	2075	.	+	.	ID=gene-C9F05_RS04435;Name=panS;gbkey=Gene;gene=panS;gene_biotype=protein_coding;locus_tag=C9F05_RS04435;old_locus_tag=C9F05_04500
NZ_PYKE01000069.1	Protein Homology	CDS	1134	2075	.	+	0	ID=cds-WP_135370051.1;Parent=gene-C9F05_RS04435;Dbxref=GenBank:WP_135370051.1;Name=WP_135370051.1;gbkey=CDS;gene=panS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463060.1;locus_tag=C9F05_RS04435;product=ketopantoate/pantoate/pantothenate transporter PanS;protein_id=WP_135370051.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	2173	2445	.	+	.	ID=gene-C9F05_RS04440;Name=C9F05_RS04440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04440;old_locus_tag=C9F05_04505
NZ_PYKE01000069.1	Protein Homology	CDS	2173	2445	.	+	0	ID=cds-WP_001207628.1;Parent=gene-C9F05_RS04440;Dbxref=GenBank:WP_001207628.1;Name=WP_001207628.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463059.1;locus_tag=C9F05_RS04440;product=DUF3811 domain-containing protein;protein_id=WP_001207628.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	2442	3311	.	-	.	ID=gene-C9F05_RS04445;Name=rluF;gbkey=Gene;gene=rluF;gene_biotype=protein_coding;locus_tag=C9F05_RS04445;old_locus_tag=C9F05_04510
NZ_PYKE01000069.1	Protein Homology	CDS	2442	3311	.	-	0	ID=cds-WP_000954618.1;Parent=gene-C9F05_RS04445;Dbxref=GenBank:WP_000954618.1;Name=WP_000954618.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluF;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463058.1;locus_tag=C9F05_RS04445;product=23S rRNA pseudouridine(2604) synthase RluF;protein_id=WP_000954618.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	3358	3897	.	-	.	ID=gene-C9F05_RS04450;Name=C9F05_RS04450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04450;old_locus_tag=C9F05_04515
NZ_PYKE01000069.1	Protein Homology	CDS	3358	3897	.	-	0	ID=cds-WP_001096724.1;Parent=gene-C9F05_RS04450;Dbxref=GenBank:WP_001096724.1;Name=WP_001096724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463057.1;locus_tag=C9F05_RS04450;product=DUF2058 domain-containing protein;protein_id=WP_001096724.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	3932	4033	.	-	.	ID=gene-C9F05_RS04455;Name=C9F05_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04455;old_locus_tag=C9F05_04520
NZ_PYKE01000069.1	Protein Homology	CDS	3932	4033	.	-	0	ID=cds-WP_135370052.1;Parent=gene-C9F05_RS04455;Dbxref=GenBank:WP_135370052.1;Name=WP_135370052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463056.1;locus_tag=C9F05_RS04455;product=hypothetical protein;protein_id=WP_135370052.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	4105	4794	.	+	.	ID=gene-C9F05_RS04460;Name=pepE;gbkey=Gene;gene=pepE;gene_biotype=protein_coding;locus_tag=C9F05_RS04460;old_locus_tag=C9F05_04525
NZ_PYKE01000069.1	Protein Homology	CDS	4105	4794	.	+	0	ID=cds-WP_000421776.1;Parent=gene-C9F05_RS04460;Dbxref=GenBank:WP_000421776.1;Name=WP_000421776.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;gene=pepE;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463055.1;locus_tag=C9F05_RS04460;product=dipeptidase PepE;protein_id=WP_000421776.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	4870	6501	.	-	.	ID=gene-C9F05_RS04465;Name=C9F05_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04465;old_locus_tag=C9F05_04530
NZ_PYKE01000069.1	Protein Homology	CDS	4870	6501	.	-	0	ID=cds-WP_000956811.1;Parent=gene-C9F05_RS04465;Dbxref=GenBank:WP_000956811.1;Name=WP_000956811.1;Ontology_term=GO:0044341,GO:0005436,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=sodium:phosphate symporter activity|0005436||IEA;go_process=sodium-dependent phosphate transport|0044341||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463054.1;locus_tag=C9F05_RS04465;product=Na/Pi cotransporter family protein;protein_id=WP_000956811.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	6768	10451	.	-	.	ID=gene-C9F05_RS04470;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=C9F05_RS04470;old_locus_tag=C9F05_04535
NZ_PYKE01000069.1	Protein Homology	CDS	6768	10451	.	-	0	ID=cds-WP_135370053.1;Parent=gene-C9F05_RS04470;Dbxref=GenBank:WP_135370053.1;Name=WP_135370053.1;Ontology_term=GO:0009086,GO:0008270,GO:0008705,GO:0031419;gbkey=CDS;gene=metH;go_function=zinc ion binding|0008270||IEA,methionine synthase activity|0008705||IEA,cobalamin binding|0031419||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312964.1;locus_tag=C9F05_RS04470;product=methionine synthase;protein_id=WP_135370053.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	10755	11579	.	+	.	ID=gene-C9F05_RS04475;Name=iclR;gbkey=Gene;gene=iclR;gene_biotype=protein_coding;locus_tag=C9F05_RS04475;old_locus_tag=C9F05_04540
NZ_PYKE01000069.1	Protein Homology	CDS	10755	11579	.	+	0	ID=cds-WP_000226430.1;Parent=gene-C9F05_RS04475;Dbxref=GenBank:WP_000226430.1;Name=WP_000226430.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=iclR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463052.1;locus_tag=C9F05_RS04475;product=glyoxylate bypass operon transcriptional repressor IclR;protein_id=WP_000226430.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	11590	11997	.	+	.	ID=gene-C9F05_RS04480;Name=C9F05_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04480;old_locus_tag=C9F05_04545
NZ_PYKE01000069.1	Protein Homology	CDS	11590	11997	.	+	0	ID=cds-WP_010989091.1;Parent=gene-C9F05_RS04480;Dbxref=GenBank:WP_010989091.1;Name=WP_010989091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463051.1;locus_tag=C9F05_RS04480;product=ASCH domain-containing protein;protein_id=WP_010989091.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	11961	13712	.	-	.	ID=gene-C9F05_RS04485;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=protein_coding;locus_tag=C9F05_RS04485;old_locus_tag=C9F05_04550
NZ_PYKE01000069.1	Protein Homology	CDS	11961	13712	.	-	0	ID=cds-WP_135370054.1;Parent=gene-C9F05_RS04485;Dbxref=GenBank:WP_135370054.1;Name=WP_135370054.1;Ontology_term=GO:0006006,GO:0008772,GO:0016791;gbkey=CDS;gene=aceK;go_function=[isocitrate dehydrogenase (NADP+)] kinase activity|0008772||IEA,phosphatase activity|0016791||IEA;go_process=glucose metabolic process|0006006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463050.1;locus_tag=C9F05_RS04485;product=bifunctional isocitrate dehydrogenase kinase/phosphatase;protein_id=WP_135370054.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	13814	15118	.	-	.	ID=gene-C9F05_RS04490;Name=aceA;gbkey=Gene;gene=aceA;gene_biotype=protein_coding;locus_tag=C9F05_RS04490;old_locus_tag=C9F05_04555
NZ_PYKE01000069.1	Protein Homology	CDS	13814	15118	.	-	0	ID=cds-WP_000857884.1;Parent=gene-C9F05_RS04490;Dbxref=GenBank:WP_000857884.1;Name=WP_000857884.1;Ontology_term=GO:0019752,GO:0004451;gbkey=CDS;gene=aceA;go_function=isocitrate lyase activity|0004451||IEA;go_process=carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463049.1;locus_tag=C9F05_RS04490;product=isocitrate lyase;protein_id=WP_000857884.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	15150	16751	.	-	.	ID=gene-C9F05_RS04495;Name=aceB;gbkey=Gene;gene=aceB;gene_biotype=protein_coding;locus_tag=C9F05_RS04495;old_locus_tag=C9F05_04560
NZ_PYKE01000069.1	Protein Homology	CDS	15150	16751	.	-	0	ID=cds-WP_001069371.1;Parent=gene-C9F05_RS04495;Dbxref=GenBank:WP_001069371.1;Name=WP_001069371.1;Ontology_term=GO:0006097,GO:0004474;gbkey=CDS;gene=aceB;go_function=malate synthase activity|0004474||IEA;go_process=glyoxylate cycle|0006097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463048.1;locus_tag=C9F05_RS04495;product=malate synthase A;protein_id=WP_001069371.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	17020	17949	.	-	.	ID=gene-C9F05_RS04500;Name=metA;gbkey=Gene;gene=metA;gene_biotype=protein_coding;locus_tag=C9F05_RS04500;old_locus_tag=C9F05_04565
NZ_PYKE01000069.1	Protein Homology	CDS	17020	17949	.	-	0	ID=cds-WP_001122767.1;Parent=gene-C9F05_RS04500;Dbxref=GenBank:WP_001122767.1;Name=WP_001122767.1;Ontology_term=GO:0019281,GO:0008899,GO:0005737;gbkey=CDS;gene=metA;go_component=cytoplasm|0005737||IEA;go_function=homoserine O-succinyltransferase activity|0008899||IEA;go_process=L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine|0019281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132837.1;locus_tag=C9F05_RS04500;product=homoserine O-acetyltransferase MetA;protein_id=WP_001122767.1;transl_table=11
NZ_PYKE01000069.1	RefSeq	gene	18106	18543	.	+	.	ID=gene-C9F05_RS04505;Name=C9F05_RS04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04505;old_locus_tag=C9F05_04570
NZ_PYKE01000069.1	Protein Homology	CDS	18106	18543	.	+	0	ID=cds-WP_000973248.1;Parent=gene-C9F05_RS04505;Dbxref=GenBank:WP_000973248.1;Name=WP_000973248.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463046.1;locus_tag=C9F05_RS04505;product=acetyltransferase;protein_id=WP_000973248.1;transl_table=11
##sequence-region NZ_PYKE01000001.1 1 617
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000001.1	RefSeq	region	1	617	.	+	.	ID=NZ_PYKE01000001.1:1..617;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000001.1	RefSeq	gene	1	617	.	+	.	ID=gene-C9F05_RS00005;Name=C9F05_RS00005;end_range=617,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9F05_RS00005;old_locus_tag=C9F05_00005;partial=true;start_range=.,1
NZ_PYKE01000001.1	cmsearch	rRNA	1	617	.	+	.	ID=rna-C9F05_RS00005;Parent=gene-C9F05_RS00005;Dbxref=RFAM:RF02541;end_range=617,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS00005;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYKE01000001.1	cmsearch	exon	1	617	.	+	.	ID=exon-C9F05_RS00005-1;Parent=rna-C9F05_RS00005;Dbxref=RFAM:RF02541;end_range=617,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS00005;partial=true;product=23S ribosomal RNA;start_range=.,1
##sequence-region NZ_PYKE01000169.1 1 18848
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000169.1	RefSeq	region	1	18848	.	+	.	ID=NZ_PYKE01000169.1:1..18848;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000169.1	RefSeq	gene	376	1965	.	+	.	ID=gene-C9F05_RS11630;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=C9F05_RS11630;old_locus_tag=C9F05_11960
NZ_PYKE01000169.1	Protein Homology	CDS	376	1965	.	+	0	ID=cds-WP_135370296.1;Parent=gene-C9F05_RS11630;Dbxref=GenBank:WP_135370296.1;Name=WP_135370296.1;Ontology_term=GO:0009152,GO:0003937,GO:0004643;gbkey=CDS;gene=purH;go_function=IMP cyclohydrolase activity|0003937||IEA,phosphoribosylaminoimidazolecarboxamide formyltransferase activity|0004643||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132841.1;locus_tag=C9F05_RS11630;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=WP_135370296.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	1977	3266	.	+	.	ID=gene-C9F05_RS11635;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=C9F05_RS11635;old_locus_tag=C9F05_11965
NZ_PYKE01000169.1	Protein Homology	CDS	1977	3266	.	+	0	ID=cds-WP_135370297.1;Parent=gene-C9F05_RS11635;Dbxref=GenBank:WP_135370297.1;Name=WP_135370297.1;Ontology_term=GO:0009113,GO:0004637;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463044.1;locus_tag=C9F05_RS11635;product=phosphoribosylamine--glycine ligase;protein_id=WP_135370297.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	3263	4588	.	-	.	ID=gene-C9F05_RS11640;Name=zraR;gbkey=Gene;gene=zraR;gene_biotype=protein_coding;locus_tag=C9F05_RS11640;old_locus_tag=C9F05_11970
NZ_PYKE01000169.1	Protein Homology	CDS	3263	4588	.	-	0	ID=cds-WP_135370298.1;Parent=gene-C9F05_RS11640;Dbxref=GenBank:WP_135370298.1;Name=WP_135370298.1;Ontology_term=GO:0000160,GO:0006355,GO:0043565;gbkey=CDS;gene=zraR;go_function=sequence-specific DNA binding|0043565||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463043.1;locus_tag=C9F05_RS11640;product=sigma-54-dependent response regulator transcription factor ZraR;protein_id=WP_135370298.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	4594	5991	.	-	.	ID=gene-C9F05_RS11645;Name=zraS;gbkey=Gene;gene=zraS;gene_biotype=protein_coding;locus_tag=C9F05_RS11645;old_locus_tag=C9F05_11975
NZ_PYKE01000169.1	Protein Homology	CDS	4594	5991	.	-	0	ID=cds-WP_064044125.1;Parent=gene-C9F05_RS11645;Dbxref=GenBank:WP_064044125.1;Name=WP_064044125.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155;gbkey=CDS;gene=zraS;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463042.1;locus_tag=C9F05_RS11645;product=two-component system sensor histidine kinase ZraS;protein_id=WP_064044125.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	6245	6700	.	+	.	ID=gene-C9F05_RS11650;Name=zraP;gbkey=Gene;gene=zraP;gene_biotype=protein_coding;locus_tag=C9F05_RS11650;old_locus_tag=C9F05_11980
NZ_PYKE01000169.1	Protein Homology	CDS	6245	6700	.	+	0	ID=cds-WP_000828129.1;Parent=gene-C9F05_RS11650;Dbxref=GenBank:WP_000828129.1;Name=WP_000828129.1;gbkey=CDS;gene=zraP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463041.1;locus_tag=C9F05_RS11650;product=zinc resistance sensor/chaperone ZraP;protein_id=WP_000828129.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	6742	7434	.	-	.	ID=gene-C9F05_RS11655;Name=C9F05_RS11655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11655;old_locus_tag=C9F05_11985
NZ_PYKE01000169.1	Protein Homology	CDS	6742	7434	.	-	0	ID=cds-WP_001083931.1;Parent=gene-C9F05_RS11655;Dbxref=GenBank:WP_001083931.1;Name=WP_001083931.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463040.1;locus_tag=C9F05_RS11655;product=DUF1481 domain-containing protein;protein_id=WP_001083931.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	7446	7718	.	-	.	ID=gene-C9F05_RS11660;Name=hupA;gbkey=Gene;gene=hupA;gene_biotype=protein_coding;locus_tag=C9F05_RS11660;old_locus_tag=C9F05_11990
NZ_PYKE01000169.1	Protein Homology	CDS	7446	7718	.	-	0	ID=cds-WP_001044509.1;Parent=gene-C9F05_RS11660;Dbxref=GenBank:WP_001044509.1;Name=WP_001044509.1;gbkey=CDS;gene=hupA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017460010.1;locus_tag=C9F05_RS11660;product=nucleoid-associated protein HU-alpha;protein_id=WP_001044509.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	7905	8495	.	-	.	ID=gene-C9F05_RS11665;Name=C9F05_RS11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11665;old_locus_tag=C9F05_11995
NZ_PYKE01000169.1	Protein Homology	CDS	7905	8495	.	-	0	ID=cds-WP_000940092.1;Parent=gene-C9F05_RS11665;Dbxref=GenBank:WP_000940092.1;Name=WP_000940092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463038.1;locus_tag=C9F05_RS11665;product=YjaG family protein;protein_id=WP_000940092.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	8537	9208	.	-	.	ID=gene-C9F05_RS11670;Name=nfi;gbkey=Gene;gene=nfi;gene_biotype=protein_coding;locus_tag=C9F05_RS11670;old_locus_tag=C9F05_12000
NZ_PYKE01000169.1	Protein Homology	CDS	8537	9208	.	-	0	ID=cds-WP_000362359.1;Parent=gene-C9F05_RS11670;Dbxref=GenBank:WP_000362359.1;Name=WP_000362359.1;Note=cleaves DNA at apurinic or apyrimidinic sites;Ontology_term=GO:0006281,GO:0004519;gbkey=CDS;gene=nfi;go_function=endonuclease activity|0004519||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463037.1;locus_tag=C9F05_RS11670;product=deoxyribonuclease V;protein_id=WP_000362359.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	9218	10282	.	-	.	ID=gene-C9F05_RS11675;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=C9F05_RS11675;old_locus_tag=C9F05_12005
NZ_PYKE01000169.1	Protein Homology	CDS	9218	10282	.	-	0	ID=cds-WP_000137619.1;Parent=gene-C9F05_RS11675;Dbxref=GenBank:WP_000137619.1;Name=WP_000137619.1;Ontology_term=GO:0006779,GO:0004853;gbkey=CDS;gene=hemE;go_function=uroporphyrinogen decarboxylase activity|0004853||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463036.2;locus_tag=C9F05_RS11675;product=uroporphyrinogen decarboxylase;protein_id=WP_000137619.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	10323	11096	.	-	.	ID=gene-C9F05_RS11680;Name=nudC;gbkey=Gene;gene=nudC;gene_biotype=protein_coding;locus_tag=C9F05_RS11680;old_locus_tag=C9F05_12010
NZ_PYKE01000169.1	Protein Homology	CDS	10323	11096	.	-	0	ID=cds-WP_000373960.1;Parent=gene-C9F05_RS11680;Dbxref=GenBank:WP_000373960.1;Name=WP_000373960.1;Ontology_term=GO:0000210,GO:0016787;gbkey=CDS;gene=nudC;go_function=NAD+ diphosphatase activity|0000210||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463035.1;locus_tag=C9F05_RS11680;product=NAD(+) diphosphatase;protein_id=WP_000373960.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	11189	11677	.	+	.	ID=gene-C9F05_RS11685;Name=rsd;gbkey=Gene;gene=rsd;gene_biotype=protein_coding;locus_tag=C9F05_RS11685;old_locus_tag=C9F05_12015
NZ_PYKE01000169.1	Protein Homology	CDS	11189	11677	.	+	0	ID=cds-WP_000934315.1;Parent=gene-C9F05_RS11685;Dbxref=GenBank:WP_000934315.1;Name=WP_000934315.1;Ontology_term=GO:0006355;gbkey=CDS;gene=rsd;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463034.1;locus_tag=C9F05_RS11685;product=sigma D regulator;protein_id=WP_000934315.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	12041	13936	.	+	.	ID=gene-C9F05_RS11690;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=C9F05_RS11690;old_locus_tag=C9F05_12020
NZ_PYKE01000169.1	Protein Homology	CDS	12041	13936	.	+	0	ID=cds-WP_135370299.1;Parent=gene-C9F05_RS11690;Dbxref=GenBank:WP_135370299.1;Name=WP_135370299.1;Ontology_term=GO:0009228,GO:0051536;gbkey=CDS;gene=thiC;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463033.1;locus_tag=C9F05_RS11690;product=phosphomethylpyrimidine synthase ThiC;protein_id=WP_135370299.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	13936	14571	.	+	.	ID=gene-C9F05_RS11695;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=C9F05_RS11695;old_locus_tag=C9F05_12025
NZ_PYKE01000169.1	Protein Homology	CDS	13936	14571	.	+	0	ID=cds-WP_135370300.1;Parent=gene-C9F05_RS11695;Dbxref=GenBank:WP_135370300.1;Name=WP_135370300.1;Ontology_term=GO:0009228,GO:0004789;gbkey=CDS;gene=thiE;go_function=thiamine-phosphate diphosphorylase activity|0004789||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463032.1;locus_tag=C9F05_RS11695;product=thiamine phosphate synthase;protein_id=WP_135370300.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	14564	15322	.	+	.	ID=gene-C9F05_RS11700;Name=thiF;gbkey=Gene;gene=thiF;gene_biotype=protein_coding;locus_tag=C9F05_RS11700;old_locus_tag=C9F05_12030
NZ_PYKE01000169.1	Protein Homology	CDS	14564	15322	.	+	0	ID=cds-WP_135370301.1;Parent=gene-C9F05_RS11700;Dbxref=GenBank:WP_135370301.1;Name=WP_135370301.1;Ontology_term=GO:0009228,GO:0016779;gbkey=CDS;gene=thiF;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463031.1;locus_tag=C9F05_RS11700;product=thiazole biosynthesis adenylyltransferase ThiF;protein_id=WP_135370301.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	15303	15503	.	+	.	ID=gene-C9F05_RS11705;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=C9F05_RS11705;old_locus_tag=C9F05_12035
NZ_PYKE01000169.1	Protein Homology	CDS	15303	15503	.	+	0	ID=cds-WP_020838417.1;Parent=gene-C9F05_RS11705;Dbxref=GenBank:WP_020838417.1;Name=WP_020838417.1;Ontology_term=GO:0009228,GO:0003824;gbkey=CDS;gene=thiS;go_function=catalytic activity|0003824||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463030.1;locus_tag=C9F05_RS11705;product=sulfur carrier protein ThiS;protein_id=WP_020838417.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	15505	16275	.	+	.	ID=gene-C9F05_RS11710;Name=thiG;gbkey=Gene;gene=thiG;gene_biotype=protein_coding;locus_tag=C9F05_RS11710;old_locus_tag=C9F05_12040
NZ_PYKE01000169.1	Protein Homology	CDS	15505	16275	.	+	0	ID=cds-WP_135370302.1;Parent=gene-C9F05_RS11710;Dbxref=GenBank:WP_135370302.1;Name=WP_135370302.1;gbkey=CDS;gene=thiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463029.1;locus_tag=C9F05_RS11710;product=thiazole synthase;protein_id=WP_135370302.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	16272	17405	.	+	.	ID=gene-C9F05_RS11715;Name=thiH;gbkey=Gene;gene=thiH;gene_biotype=protein_coding;locus_tag=C9F05_RS11715;old_locus_tag=C9F05_12045
NZ_PYKE01000169.1	Protein Homology	CDS	16272	17405	.	+	0	ID=cds-WP_135370303.1;Parent=gene-C9F05_RS11715;Dbxref=GenBank:WP_135370303.1;Name=WP_135370303.1;Ontology_term=GO:0009228,GO:0005506,GO:0016829,GO:0051539,GO:1904047;gbkey=CDS;gene=thiH;go_function=iron ion binding|0005506||IEA,lyase activity|0016829||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463028.1;locus_tag=C9F05_RS11715;product=2-iminoacetate synthase ThiH;protein_id=WP_135370303.1;transl_table=11
NZ_PYKE01000169.1	RefSeq	gene	17626	18654	.	-	.	ID=gene-C9F05_RS11720;Name=C9F05_RS11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11720;old_locus_tag=C9F05_12050
NZ_PYKE01000169.1	Protein Homology	CDS	17626	18654	.	-	0	ID=cds-WP_047607392.1;Parent=gene-C9F05_RS11720;Dbxref=GenBank:WP_047607392.1;Name=WP_047607392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000400600.1;locus_tag=C9F05_RS11720;product=type III secretion system effector arginine glycosyltransferase SseK1;protein_id=WP_047607392.1;transl_table=11
##sequence-region NZ_PYKE01000331.1 1 595
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000331.1	RefSeq	region	1	595	.	+	.	ID=NZ_PYKE01000331.1:1..595;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000331.1	RefSeq	gene	96	595	.	-	.	ID=gene-C9F05_RS22505;Name=C9F05_RS22505;end_range=595,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22505;old_locus_tag=C9F05_23100;partial=true
NZ_PYKE01000331.1	Protein Homology	CDS	96	595	.	-	2	ID=cds-WP_303396431.1;Parent=gene-C9F05_RS22505;Dbxref=GenBank:WP_303396431.1;Name=WP_303396431.1;end_range=595,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007766018.1;locus_tag=C9F05_RS22505;partial=true;product=RHS repeat-associated core domain-containing protein;protein_id=WP_303396431.1;transl_table=11
##sequence-region NZ_PYKE01000156.1 1 18656
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000156.1	RefSeq	region	1	18656	.	+	.	ID=NZ_PYKE01000156.1:1..18656;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000156.1	RefSeq	gene	1	594	.	-	.	ID=gene-C9F05_RS10925;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=protein_coding;locus_tag=C9F05_RS10925;old_locus_tag=C9F05_11210;partial=true;start_range=.,1
NZ_PYKE01000156.1	Protein Homology	CDS	1	594	.	-	0	ID=cds-WP_135370269.1;Parent=gene-C9F05_RS10925;Dbxref=GenBank:WP_135370269.1;Name=WP_135370269.1;Ontology_term=GO:0031167,GO:0046118,GO:0008168;gbkey=CDS;gene=rsmG;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462772.3;locus_tag=C9F05_RS10925;partial=true;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;protein_id=WP_135370269.1;start_range=.,1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	697	2586	.	-	.	ID=gene-C9F05_RS10930;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=C9F05_RS10930;old_locus_tag=C9F05_11215
NZ_PYKE01000156.1	Protein Homology	CDS	697	2586	.	-	0	ID=cds-WP_000499872.1;Parent=gene-C9F05_RS10930;Dbxref=GenBank:WP_000499872.1;Name=WP_000499872.1;Ontology_term=GO:0002098,GO:0008033;gbkey=CDS;gene=mnmG;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000499793.1;locus_tag=C9F05_RS10930;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=WP_000499872.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	2965	3408	.	-	.	ID=gene-C9F05_RS10940;Name=mioC;gbkey=Gene;gene=mioC;gene_biotype=protein_coding;locus_tag=C9F05_RS10940;old_locus_tag=C9F05_11225
NZ_PYKE01000156.1	Protein Homology	CDS	2965	3408	.	-	0	ID=cds-WP_000763722.1;Parent=gene-C9F05_RS10940;Dbxref=GenBank:WP_000763722.1;Name=WP_000763722.1;Ontology_term=GO:0010181;gbkey=CDS;gene=mioC;go_function=FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462774.1;locus_tag=C9F05_RS10940;product=FMN-binding protein MioC;protein_id=WP_000763722.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	3498	3956	.	-	.	ID=gene-C9F05_RS10945;Name=asnC;gbkey=Gene;gene=asnC;gene_biotype=protein_coding;locus_tag=C9F05_RS10945;old_locus_tag=C9F05_11230
NZ_PYKE01000156.1	Protein Homology	CDS	3498	3956	.	-	0	ID=cds-WP_000433016.1;Parent=gene-C9F05_RS10945;Dbxref=GenBank:WP_000433016.1;Name=WP_000433016.1;Ontology_term=GO:0043565;gbkey=CDS;gene=asnC;go_function=sequence-specific DNA binding|0043565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462775.1;locus_tag=C9F05_RS10945;product=transcriptional regulator AsnC;protein_id=WP_000433016.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	4107	5099	.	+	.	ID=gene-C9F05_RS10950;Name=asnA;gbkey=Gene;gene=asnA;gene_biotype=protein_coding;locus_tag=C9F05_RS10950;old_locus_tag=C9F05_11235
NZ_PYKE01000156.1	Protein Homology	CDS	4107	5099	.	+	0	ID=cds-WP_000845123.1;Parent=gene-C9F05_RS10950;Dbxref=GenBank:WP_000845123.1;Name=WP_000845123.1;Ontology_term=GO:0006529,GO:0004071,GO:0005737;gbkey=CDS;gene=asnA;go_component=cytoplasm|0005737||IEA;go_function=aspartate-ammonia ligase activity|0004071||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462776.1;locus_tag=C9F05_RS10950;product=aspartate--ammonia ligase;protein_id=WP_000845123.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	5104	6555	.	-	.	ID=gene-C9F05_RS10955;Name=viaA;gbkey=Gene;gene=viaA;gene_biotype=protein_coding;locus_tag=C9F05_RS10955;old_locus_tag=C9F05_11240
NZ_PYKE01000156.1	Protein Homology	CDS	5104	6555	.	-	0	ID=cds-WP_000956592.1;Parent=gene-C9F05_RS10955;Dbxref=GenBank:WP_000956592.1;Name=WP_000956592.1;gbkey=CDS;gene=viaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312714.1;locus_tag=C9F05_RS10955;product=ATPase RavA stimulator ViaA;protein_id=WP_000956592.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	6549	8045	.	-	.	ID=gene-C9F05_RS10960;Name=ravA;gbkey=Gene;gene=ravA;gene_biotype=protein_coding;locus_tag=C9F05_RS10960;old_locus_tag=C9F05_11245
NZ_PYKE01000156.1	Protein Homology	CDS	6549	8045	.	-	0	ID=cds-WP_000940996.1;Parent=gene-C9F05_RS10960;Dbxref=GenBank:WP_000940996.1;Name=WP_000940996.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=ravA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462778.1;locus_tag=C9F05_RS10960;product=ATPase RavA;protein_id=WP_000940996.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	8393	10261	.	+	.	ID=gene-C9F05_RS10965;Name=kup;gbkey=Gene;gene=kup;gene_biotype=protein_coding;locus_tag=C9F05_RS10965;old_locus_tag=C9F05_11250
NZ_PYKE01000156.1	Protein Homology	CDS	8393	10261	.	+	0	ID=cds-WP_000102338.1;Parent=gene-C9F05_RS10965;Dbxref=GenBank:WP_000102338.1;Name=WP_000102338.1;Ontology_term=GO:0015079,GO:0016020;gbkey=CDS;gene=kup;go_component=membrane|0016020||IEA;go_function=potassium ion transmembrane transporter activity|0015079||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000102304.1;locus_tag=C9F05_RS10965;product=low affinity potassium transporter Kup;protein_id=WP_000102338.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	10478	10897	.	+	.	ID=gene-C9F05_RS10970;Name=rbsD;gbkey=Gene;gene=rbsD;gene_biotype=protein_coding;locus_tag=C9F05_RS10970;old_locus_tag=C9F05_11255
NZ_PYKE01000156.1	Protein Homology	CDS	10478	10897	.	+	0	ID=cds-WP_000715944.1;Parent=gene-C9F05_RS10970;Dbxref=GenBank:WP_000715944.1;Name=WP_000715944.1;Ontology_term=GO:0016872;gbkey=CDS;gene=rbsD;go_function=intramolecular lyase activity|0016872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462780.1;locus_tag=C9F05_RS10970;product=D-ribose pyranase;protein_id=WP_000715944.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	10905	12410	.	+	.	ID=gene-C9F05_RS10975;Name=rbsA;gbkey=Gene;gene=rbsA;gene_biotype=protein_coding;locus_tag=C9F05_RS10975;old_locus_tag=C9F05_11260
NZ_PYKE01000156.1	Protein Homology	CDS	10905	12410	.	+	0	ID=cds-WP_000339359.1;Parent=gene-C9F05_RS10975;Dbxref=GenBank:WP_000339359.1;Name=WP_000339359.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rbsA;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462781.1;locus_tag=C9F05_RS10975;product=ribose ABC transporter ATP-binding protein RbsA;protein_id=WP_000339359.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	12416	13381	.	+	.	ID=gene-C9F05_RS10980;Name=rbsC;gbkey=Gene;gene=rbsC;gene_biotype=protein_coding;locus_tag=C9F05_RS10980;old_locus_tag=C9F05_11265
NZ_PYKE01000156.1	Protein Homology	CDS	12416	13381	.	+	0	ID=cds-WP_000211345.1;Parent=gene-C9F05_RS10980;Dbxref=GenBank:WP_000211345.1;Name=WP_000211345.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=rbsC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002882531.1;locus_tag=C9F05_RS10980;product=ribose ABC transporter permease;protein_id=WP_000211345.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	13406	14296	.	+	.	ID=gene-C9F05_RS10985;Name=rbsB;gbkey=Gene;gene=rbsB;gene_biotype=protein_coding;locus_tag=C9F05_RS10985;old_locus_tag=C9F05_11270
NZ_PYKE01000156.1	Protein Homology	CDS	13406	14296	.	+	0	ID=cds-WP_001056260.1;Parent=gene-C9F05_RS10985;Dbxref=GenBank:WP_001056260.1;Name=WP_001056260.1;gbkey=CDS;gene=rbsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462783.1;locus_tag=C9F05_RS10985;product=ribose ABC transporter substrate-binding protein RbsB;protein_id=WP_001056260.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	14429	15358	.	+	.	ID=gene-C9F05_RS10990;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=protein_coding;locus_tag=C9F05_RS10990;old_locus_tag=C9F05_11275
NZ_PYKE01000156.1	Protein Homology	CDS	14429	15358	.	+	0	ID=cds-WP_000844730.1;Parent=gene-C9F05_RS10990;Dbxref=GenBank:WP_000844730.1;Name=WP_000844730.1;Ontology_term=GO:0006014,GO:0004747;gbkey=CDS;gene=rbsK;go_function=ribokinase activity|0004747||IEA;go_process=D-ribose metabolic process|0006014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462784.1;locus_tag=C9F05_RS10990;product=ribokinase;protein_id=WP_000844730.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	15362	16360	.	+	.	ID=gene-C9F05_RS10995;Name=rbsR;gbkey=Gene;gene=rbsR;gene_biotype=protein_coding;locus_tag=C9F05_RS10995;old_locus_tag=C9F05_11280
NZ_PYKE01000156.1	Protein Homology	CDS	15362	16360	.	+	0	ID=cds-WP_000224487.1;Parent=gene-C9F05_RS10995;Dbxref=GenBank:WP_000224487.1;Name=WP_000224487.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rbsR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462785.1;locus_tag=C9F05_RS10995;product=ribose operon transcriptional repressor RbsR;protein_id=WP_000224487.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	16326	17753	.	-	.	ID=gene-C9F05_RS11000;Name=mdtD;gbkey=Gene;gene=mdtD;gene_biotype=protein_coding;locus_tag=C9F05_RS11000;old_locus_tag=C9F05_11285
NZ_PYKE01000156.1	Protein Homology	CDS	16326	17753	.	-	0	ID=cds-WP_000202071.1;Parent=gene-C9F05_RS11000;Dbxref=GenBank:WP_000202071.1;Name=WP_000202071.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mdtD;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462786.1;locus_tag=C9F05_RS11000;product=multidrug transporter subunit MdtD;protein_id=WP_000202071.1;transl_table=11
NZ_PYKE01000156.1	RefSeq	gene	17765	18469	.	-	.	ID=gene-C9F05_RS11005;Name=C9F05_RS11005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11005;old_locus_tag=C9F05_11290
NZ_PYKE01000156.1	Protein Homology	CDS	17765	18469	.	-	0	ID=cds-WP_001131144.1;Parent=gene-C9F05_RS11005;Dbxref=GenBank:WP_001131144.1;Name=WP_001131144.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462787.1;locus_tag=C9F05_RS11005;product=FadR/GntR family transcriptional regulator;protein_id=WP_001131144.1;transl_table=11
##sequence-region NZ_PYKE01000219.1 1 59264
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000219.1	RefSeq	region	1	59264	.	+	.	ID=NZ_PYKE01000219.1:1..59264;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000219.1	RefSeq	pseudogene	1	614	.	+	.	ID=gene-C9F05_RS14185;Name=sipB;gbkey=Gene;gene=sipB;gene_biotype=pseudogene;locus_tag=C9F05_RS14185;old_locus_tag=C9F05_14590;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000219.1	Protein Homology	CDS	1	614	.	+	2	ID=cds-C9F05_RS14185;Parent=gene-C9F05_RS14185;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=sipB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461806.1;locus_tag=C9F05_RS14185;partial=true;product=SPI-1 type III secretion system needle tip complex protein SipB;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	642	1871	.	+	.	ID=gene-C9F05_RS14190;Name=sipC;gbkey=Gene;gene=sipC;gene_biotype=protein_coding;locus_tag=C9F05_RS14190;old_locus_tag=C9F05_14595
NZ_PYKE01000219.1	Protein Homology	CDS	642	1871	.	+	0	ID=cds-WP_000909019.1;Parent=gene-C9F05_RS14190;Dbxref=GenBank:WP_000909019.1;Name=WP_000909019.1;gbkey=CDS;gene=sipC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461805.1;locus_tag=C9F05_RS14190;product=SPI-1 type III secretion system needle tip complex protein SipC;protein_id=WP_000909019.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	1942	2973	.	+	.	ID=gene-C9F05_RS14195;Name=sipD;gbkey=Gene;gene=sipD;gene_biotype=protein_coding;locus_tag=C9F05_RS14195;old_locus_tag=C9F05_14600
NZ_PYKE01000219.1	Protein Homology	CDS	1942	2973	.	+	0	ID=cds-WP_135370398.1;Parent=gene-C9F05_RS14195;Dbxref=GenBank:WP_135370398.1;Name=WP_135370398.1;gbkey=CDS;gene=sipD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461804.1;locus_tag=C9F05_RS14195;product=SPI-1 type III secretion system needle tip complex protein SipD;protein_id=WP_135370398.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	2992	5049	.	+	.	ID=gene-C9F05_RS14200;Name=sipA;gbkey=Gene;gene=sipA;gene_biotype=protein_coding;locus_tag=C9F05_RS14200;old_locus_tag=C9F05_14605
NZ_PYKE01000219.1	Protein Homology	CDS	2992	5049	.	+	0	ID=cds-WP_135370399.1;Parent=gene-C9F05_RS14200;Dbxref=GenBank:WP_135370399.1;Name=WP_135370399.1;gbkey=CDS;gene=sipA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461803.1;locus_tag=C9F05_RS14200;product=SPI-1 type III secretion system effector SipA;protein_id=WP_135370399.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	5068	5316	.	+	.	ID=gene-C9F05_RS14205;Name=C9F05_RS14205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14205;old_locus_tag=C9F05_14610
NZ_PYKE01000219.1	Protein Homology	CDS	5068	5316	.	+	0	ID=cds-WP_023227559.1;Parent=gene-C9F05_RS14205;Dbxref=GenBank:WP_023227559.1;Name=WP_023227559.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001055583.1;locus_tag=C9F05_RS14205;product=acyl carrier protein;protein_id=WP_023227559.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	5360	5620	.	+	.	ID=gene-C9F05_RS14210;Name=C9F05_RS14210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14210;old_locus_tag=C9F05_14615
NZ_PYKE01000219.1	Protein Homology	CDS	5360	5620	.	+	0	ID=cds-WP_000692250.1;Parent=gene-C9F05_RS14210;Dbxref=GenBank:WP_000692250.1;Name=WP_000692250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_449260.1;locus_tag=C9F05_RS14210;product=hypothetical protein;protein_id=WP_000692250.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	5647	6039	.	+	.	ID=gene-C9F05_RS14215;Name=sicP;gbkey=Gene;gene=sicP;gene_biotype=protein_coding;locus_tag=C9F05_RS14215;old_locus_tag=C9F05_14620
NZ_PYKE01000219.1	Protein Homology	CDS	5647	6039	.	+	0	ID=cds-WP_001748715.1;Parent=gene-C9F05_RS14215;Dbxref=GenBank:WP_001748715.1;Name=WP_001748715.1;gbkey=CDS;gene=sicP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461800.1;locus_tag=C9F05_RS14215;product=chaperone SicP;protein_id=WP_001748715.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	6026	7657	.	+	.	ID=gene-C9F05_RS14220;Name=sptP;gbkey=Gene;gene=sptP;gene_biotype=protein_coding;locus_tag=C9F05_RS14220;old_locus_tag=C9F05_14625
NZ_PYKE01000219.1	Protein Homology	CDS	6026	7657	.	+	0	ID=cds-WP_135370400.1;Parent=gene-C9F05_RS14220;Dbxref=GenBank:WP_135370400.1;Name=WP_135370400.1;gbkey=CDS;gene=sptP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461799.1;locus_tag=C9F05_RS14220;product=SPI-1 type III secretion system effector GTPase-activating protein SptP;protein_id=WP_135370400.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	7711	8193	.	-	.	ID=gene-C9F05_RS14225;Name=iagB;gbkey=Gene;gene=iagB;gene_biotype=protein_coding;locus_tag=C9F05_RS14225;old_locus_tag=C9F05_14630
NZ_PYKE01000219.1	Protein Homology	CDS	7711	8193	.	-	0	ID=cds-WP_000558930.1;Parent=gene-C9F05_RS14225;Dbxref=GenBank:WP_000558930.1;Name=WP_000558930.1;gbkey=CDS;gene=iagB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461798.1;locus_tag=C9F05_RS14225;product=SPI-1 type III secretion system invasion protein IagB;protein_id=WP_000558930.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	8211	9872	.	-	.	ID=gene-C9F05_RS14230;Name=hilA;gbkey=Gene;gene=hilA;gene_biotype=protein_coding;locus_tag=C9F05_RS14230;old_locus_tag=C9F05_14635
NZ_PYKE01000219.1	Protein Homology	CDS	8211	9872	.	-	0	ID=cds-WP_001120085.1;Parent=gene-C9F05_RS14230;Dbxref=GenBank:WP_001120085.1;Name=WP_001120085.1;gbkey=CDS;gene=hilA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461797.1;locus_tag=C9F05_RS14230;product=transcriptional regulator HilA;protein_id=WP_001120085.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	10961	11890	.	-	.	ID=gene-C9F05_RS14235;Name=hilD;gbkey=Gene;gene=hilD;gene_biotype=protein_coding;locus_tag=C9F05_RS14235;old_locus_tag=C9F05_14640
NZ_PYKE01000219.1	Protein Homology	CDS	10961	11890	.	-	0	ID=cds-WP_000432702.1;Parent=gene-C9F05_RS14235;Dbxref=GenBank:WP_000432702.1;Name=WP_000432702.1;gbkey=CDS;gene=hilD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461796.1;locus_tag=C9F05_RS14235;product=transcriptional regulator HilD;protein_id=WP_000432702.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	12206	13384	.	+	.	ID=gene-C9F05_RS14240;Name=prgH;gbkey=Gene;gene=prgH;gene_biotype=protein_coding;locus_tag=C9F05_RS14240;old_locus_tag=C9F05_14645
NZ_PYKE01000219.1	Protein Homology	CDS	12206	13384	.	+	0	ID=cds-WP_135370401.1;Parent=gene-C9F05_RS14240;Dbxref=GenBank:WP_135370401.1;Name=WP_135370401.1;gbkey=CDS;gene=prgH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461795.1;locus_tag=C9F05_RS14240;product=type III secretion system inner membrane ring protein PrgH;protein_id=WP_135370401.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	13409	13651	.	+	.	ID=gene-C9F05_RS14245;Name=prgI;gbkey=Gene;gene=prgI;gene_biotype=protein_coding;locus_tag=C9F05_RS14245;old_locus_tag=C9F05_14650
NZ_PYKE01000219.1	Protein Homology	CDS	13409	13651	.	+	0	ID=cds-WP_000235229.1;Parent=gene-C9F05_RS14245;Dbxref=GenBank:WP_000235229.1;Name=WP_000235229.1;gbkey=CDS;gene=prgI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461794.1;locus_tag=C9F05_RS14245;product=type III secretion system needle filament protein PrgI;protein_id=WP_000235229.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	13670	13975	.	+	.	ID=gene-C9F05_RS14250;Name=prgJ;gbkey=Gene;gene=prgJ;gene_biotype=protein_coding;locus_tag=C9F05_RS14250;old_locus_tag=C9F05_14655
NZ_PYKE01000219.1	Protein Homology	CDS	13670	13975	.	+	0	ID=cds-WP_000020431.1;Parent=gene-C9F05_RS14250;Dbxref=GenBank:WP_000020431.1;Name=WP_000020431.1;gbkey=CDS;gene=prgJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461793.1;locus_tag=C9F05_RS14250;product=type III secretion system inner rod protein PrgJ;protein_id=WP_000020431.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	13972	14730	.	+	.	ID=gene-C9F05_RS14255;Name=prgK;gbkey=Gene;gene=prgK;gene_biotype=protein_coding;locus_tag=C9F05_RS14255;old_locus_tag=C9F05_14660
NZ_PYKE01000219.1	Protein Homology	CDS	13972	14730	.	+	0	ID=cds-WP_000621238.1;Parent=gene-C9F05_RS14255;Dbxref=GenBank:WP_000621238.1;Name=WP_000621238.1;gbkey=CDS;gene=prgK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461792.1;locus_tag=C9F05_RS14255;product=type III secretion system inner membrane ring lipoprotein PrgK;protein_id=WP_000621238.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	14702	15301	.	+	.	ID=gene-C9F05_RS14260;Name=orgA;gbkey=Gene;gene=orgA;gene_biotype=protein_coding;locus_tag=C9F05_RS14260;old_locus_tag=C9F05_14665
NZ_PYKE01000219.1	Protein Homology	CDS	14702	15301	.	+	0	ID=cds-WP_001591231.1;Parent=gene-C9F05_RS14260;Dbxref=GenBank:WP_001591231.1;Name=WP_001591231.1;gbkey=CDS;gene=orgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461791.1;locus_tag=C9F05_RS14260;product=oxygen-regulated invasion protein OrgA;protein_id=WP_001591231.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	15258	15929	.	+	.	ID=gene-C9F05_RS14265;Name=orgB;gbkey=Gene;gene=orgB;gene_biotype=protein_coding;locus_tag=C9F05_RS14265;old_locus_tag=C9F05_14670
NZ_PYKE01000219.1	Protein Homology	CDS	15258	15929	.	+	0	ID=cds-WP_000916655.1;Parent=gene-C9F05_RS14265;Dbxref=GenBank:WP_000916655.1;Name=WP_000916655.1;gbkey=CDS;gene=orgB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835247.1;locus_tag=C9F05_RS14265;product=type III secretion system linker protein OrgB;protein_id=WP_000916655.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	15945	16397	.	+	.	ID=gene-C9F05_RS14270;Name=C9F05_RS14270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14270;old_locus_tag=C9F05_14675
NZ_PYKE01000219.1	Protein Homology	CDS	15945	16397	.	+	0	ID=cds-WP_000612184.1;Parent=gene-C9F05_RS14270;Dbxref=GenBank:WP_000612184.1;Name=WP_000612184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461789.1;locus_tag=C9F05_RS14270;product=type III secretion system effector protein OrgC;protein_id=WP_000612184.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	16742	17629	.	+	.	ID=gene-C9F05_RS14275;Name=hilC;gbkey=Gene;gene=hilC;gene_biotype=protein_coding;locus_tag=C9F05_RS14275;old_locus_tag=C9F05_14680
NZ_PYKE01000219.1	Protein Homology	CDS	16742	17629	.	+	0	ID=cds-WP_000243998.1;Parent=gene-C9F05_RS14275;Dbxref=GenBank:WP_000243998.1;Name=WP_000243998.1;gbkey=CDS;gene=hilC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461788.1;locus_tag=C9F05_RS14275;product=invasion transcriptional regulator HilC;protein_id=WP_000243998.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	18013	18768	.	+	.	ID=gene-C9F05_RS14280;Name=sprB;gbkey=Gene;gene=sprB;gene_biotype=protein_coding;locus_tag=C9F05_RS14280;old_locus_tag=C9F05_14690
NZ_PYKE01000219.1	Protein Homology	CDS	18013	18768	.	+	0	ID=cds-WP_017441148.1;Parent=gene-C9F05_RS14280;Dbxref=GenBank:WP_017441148.1;Name=WP_017441148.1;gbkey=CDS;gene=sprB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461787.1;locus_tag=C9F05_RS14280;product=transcriptional regulator SprB;protein_id=WP_017441148.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	18929	19837	.	+	.	ID=gene-C9F05_RS14285;Name=avrA;gbkey=Gene;gene=avrA;gene_biotype=protein_coding;locus_tag=C9F05_RS14285;old_locus_tag=C9F05_14695
NZ_PYKE01000219.1	Protein Homology	CDS	18929	19837	.	+	0	ID=cds-WP_077905364.1;Parent=gene-C9F05_RS14285;Dbxref=GenBank:WP_077905364.1;Name=WP_077905364.1;gbkey=CDS;gene=avrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461786.1;locus_tag=C9F05_RS14285;product=type III secretion system YopJ family effector AvrA;protein_id=WP_077905364.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	19936	20784	.	-	.	ID=gene-C9F05_RS14290;Name=sitD;gbkey=Gene;gene=sitD;gene_biotype=protein_coding;locus_tag=C9F05_RS14290;old_locus_tag=C9F05_14700
NZ_PYKE01000219.1	Protein Homology	CDS	19936	20784	.	-	0	ID=cds-WP_000480209.1;Parent=gene-C9F05_RS14290;Dbxref=GenBank:WP_000480209.1;Name=WP_000480209.1;gbkey=CDS;gene=sitD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461785.1;locus_tag=C9F05_RS14290;product=iron/manganese ABC transporter permease subunit SitD;protein_id=WP_000480209.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	20775	21635	.	-	.	ID=gene-C9F05_RS14295;Name=sitC;gbkey=Gene;gene=sitC;gene_biotype=protein_coding;locus_tag=C9F05_RS14295;old_locus_tag=C9F05_14705
NZ_PYKE01000219.1	Protein Homology	CDS	20775	21635	.	-	0	ID=cds-WP_001104336.1;Parent=gene-C9F05_RS14295;Dbxref=GenBank:WP_001104336.1;Name=WP_001104336.1;gbkey=CDS;gene=sitC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461784.1;locus_tag=C9F05_RS14295;product=iron/manganese ABC transporter permease subunit SitC;protein_id=WP_001104336.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	21632	22453	.	-	.	ID=gene-C9F05_RS14300;Name=sitB;gbkey=Gene;gene=sitB;gene_biotype=protein_coding;locus_tag=C9F05_RS14300;old_locus_tag=C9F05_14710
NZ_PYKE01000219.1	Protein Homology	CDS	21632	22453	.	-	0	ID=cds-WP_000083153.1;Parent=gene-C9F05_RS14300;Dbxref=GenBank:WP_000083153.1;Name=WP_000083153.1;gbkey=CDS;gene=sitB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461783.1;locus_tag=C9F05_RS14300;product=iron/manganese ABC transporter ATP-binding protein SitB;protein_id=WP_000083153.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	22450	23367	.	-	.	ID=gene-C9F05_RS14305;Name=sitA;gbkey=Gene;gene=sitA;gene_biotype=protein_coding;locus_tag=C9F05_RS14305;old_locus_tag=C9F05_14715
NZ_PYKE01000219.1	Protein Homology	CDS	22450	23367	.	-	0	ID=cds-WP_000182930.1;Parent=gene-C9F05_RS14305;Dbxref=GenBank:WP_000182930.1;Name=WP_000182930.1;gbkey=CDS;gene=sitA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461782.1;locus_tag=C9F05_RS14305;product=iron/manganese ABC transporter substrate-binding protein SitA;protein_id=WP_000182930.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	23549	23893	.	+	.	ID=gene-C9F05_RS14310;Name=C9F05_RS14310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14310;old_locus_tag=C9F05_14720
NZ_PYKE01000219.1	Protein Homology	CDS	23549	23893	.	+	0	ID=cds-WP_045901655.1;Parent=gene-C9F05_RS14310;Dbxref=GenBank:WP_045901655.1;Name=WP_045901655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461781.1;locus_tag=C9F05_RS14310;product=nitrous oxide-stimulated promoter family protein;protein_id=WP_045901655.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	23955	26033	.	-	.	ID=gene-C9F05_RS14315;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=C9F05_RS14315;old_locus_tag=C9F05_14725
NZ_PYKE01000219.1	Protein Homology	CDS	23955	26033	.	-	0	ID=cds-WP_000122692.1;Parent=gene-C9F05_RS14315;Dbxref=GenBank:WP_000122692.1;Name=WP_000122692.1;Ontology_term=GO:0006355,GO:0005515,GO:0005524,GO:0008134,GO:0043565;gbkey=CDS;gene=flhA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA,transcription factor binding|0008134||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461780.1;locus_tag=C9F05_RS14315;product=formate hydrogenlyase transcriptional activator FlhA;protein_id=WP_000122692.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	26252	27262	.	-	.	ID=gene-C9F05_RS14320;Name=hypE;gbkey=Gene;gene=hypE;gene_biotype=protein_coding;locus_tag=C9F05_RS14320;old_locus_tag=C9F05_14730
NZ_PYKE01000219.1	Protein Homology	CDS	26252	27262	.	-	0	ID=cds-WP_001059962.1;Parent=gene-C9F05_RS14320;Dbxref=GenBank:WP_001059962.1;Name=WP_001059962.1;gbkey=CDS;gene=hypE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417210.2;locus_tag=C9F05_RS14320;product=hydrogenase expression/formation protein HypE;protein_id=WP_001059962.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	27259	28380	.	-	.	ID=gene-C9F05_RS14325;Name=hypD;gbkey=Gene;gene=hypD;gene_biotype=protein_coding;locus_tag=C9F05_RS14325;old_locus_tag=C9F05_14735
NZ_PYKE01000219.1	Protein Homology	CDS	27259	28380	.	-	0	ID=cds-WP_001212958.1;Parent=gene-C9F05_RS14325;Dbxref=GenBank:WP_001212958.1;Name=WP_001212958.1;Ontology_term=GO:0036211,GO:0016530;gbkey=CDS;gene=hypD;go_function=metallochaperone activity|0016530||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461778.2;locus_tag=C9F05_RS14325;product=hydrogenase formation protein HypD;protein_id=WP_001212958.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	28380	28652	.	-	.	ID=gene-C9F05_RS14330;Name=hypC;gbkey=Gene;gene=hypC;gene_biotype=protein_coding;locus_tag=C9F05_RS14330;old_locus_tag=C9F05_14740
NZ_PYKE01000219.1	Protein Homology	CDS	28380	28652	.	-	0	ID=cds-WP_000334871.1;Parent=gene-C9F05_RS14330;Dbxref=GenBank:WP_000334871.1;Name=WP_000334871.1;gbkey=CDS;gene=hypC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461777.1;locus_tag=C9F05_RS14330;product=hydrogenase 3 maturation protein HypC;protein_id=WP_000334871.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	28643	29515	.	-	.	ID=gene-C9F05_RS14335;Name=hypB;gbkey=Gene;gene=hypB;gene_biotype=protein_coding;locus_tag=C9F05_RS14335;old_locus_tag=C9F05_14745
NZ_PYKE01000219.1	Protein Homology	CDS	28643	29515	.	-	0	ID=cds-WP_000337636.1;Parent=gene-C9F05_RS14335;Dbxref=GenBank:WP_000337636.1;Name=WP_000337636.1;Ontology_term=GO:0051604,GO:0003924,GO:0016151;gbkey=CDS;gene=hypB;go_function=GTPase activity|0003924||IEA,nickel cation binding|0016151||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461776.1;locus_tag=C9F05_RS14335;product=hydrogenase nickel incorporation protein HypB;protein_id=WP_000337636.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	29584	29940	.	-	.	ID=gene-C9F05_RS14340;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=C9F05_RS14340;old_locus_tag=C9F05_14750
NZ_PYKE01000219.1	Protein Homology	CDS	29584	29940	.	-	0	ID=cds-WP_000544461.1;Parent=gene-C9F05_RS14340;Dbxref=GenBank:WP_000544461.1;Name=WP_000544461.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461775.1;locus_tag=C9F05_RS14340;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544461.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	30150	30611	.	+	.	ID=gene-C9F05_RS14350;Name=hycA;gbkey=Gene;gene=hycA;gene_biotype=protein_coding;locus_tag=C9F05_RS14350;old_locus_tag=C9F05_14760
NZ_PYKE01000219.1	Protein Homology	CDS	30150	30611	.	+	0	ID=cds-WP_000158075.1;Parent=gene-C9F05_RS14350;Dbxref=GenBank:WP_000158075.1;Name=WP_000158075.1;gbkey=CDS;gene=hycA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461774.1;locus_tag=C9F05_RS14350;product=formate hydrogenlyase regulator HycA;protein_id=WP_000158075.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	30757	31365	.	+	.	ID=gene-C9F05_RS14355;Name=hycB;gbkey=Gene;gene=hycB;gene_biotype=protein_coding;locus_tag=C9F05_RS14355;old_locus_tag=C9F05_14765
NZ_PYKE01000219.1	Protein Homology	CDS	30757	31365	.	+	0	ID=cds-WP_001079164.1;Parent=gene-C9F05_RS14355;Dbxref=GenBank:WP_001079164.1;Name=WP_001079164.1;gbkey=CDS;gene=hycB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461773.1;locus_tag=C9F05_RS14355;product=formate hydrogenlyase subunit HycB;protein_id=WP_001079164.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	31365	33191	.	+	.	ID=gene-C9F05_RS14360;Name=hycC;gbkey=Gene;gene=hycC;gene_biotype=protein_coding;locus_tag=C9F05_RS14360;old_locus_tag=C9F05_14770
NZ_PYKE01000219.1	Protein Homology	CDS	31365	33191	.	+	0	ID=cds-WP_114064068.1;Parent=gene-C9F05_RS14360;Dbxref=GenBank:WP_114064068.1;Name=WP_114064068.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=hycC;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461772.2;locus_tag=C9F05_RS14360;product=formate hydrogenlyase subunit 3;protein_id=WP_114064068.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	33194	34117	.	+	.	ID=gene-C9F05_RS14365;Name=C9F05_RS14365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14365;old_locus_tag=C9F05_14775
NZ_PYKE01000219.1	Protein Homology	CDS	33194	34117	.	+	0	ID=cds-WP_000110563.1;Parent=gene-C9F05_RS14365;Dbxref=GenBank:WP_000110563.1;Name=WP_000110563.1;Ontology_term=GO:0022900,GO:0016491,GO:1990204;gbkey=CDS;go_component=oxidoreductase complex|1990204||IEA;go_function=oxidoreductase activity|0016491||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461771.1;locus_tag=C9F05_RS14365;product=respiratory chain complex I subunit 1 family protein;protein_id=WP_000110563.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	34135	35844	.	+	.	ID=gene-C9F05_RS14370;Name=hycE;gbkey=Gene;gene=hycE;gene_biotype=protein_coding;locus_tag=C9F05_RS14370;old_locus_tag=C9F05_14780
NZ_PYKE01000219.1	Protein Homology	CDS	34135	35844	.	+	0	ID=cds-WP_001288155.1;Parent=gene-C9F05_RS14370;Dbxref=GenBank:WP_001288155.1;Name=WP_001288155.1;gbkey=CDS;gene=hycE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130590.1;locus_tag=C9F05_RS14370;product=formate hydrogenlyase subunit HycE;protein_id=WP_001288155.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	35854	36396	.	+	.	ID=gene-C9F05_RS14375;Name=hycF;gbkey=Gene;gene=hycF;gene_biotype=protein_coding;locus_tag=C9F05_RS14375;old_locus_tag=C9F05_14785
NZ_PYKE01000219.1	Protein Homology	CDS	35854	36396	.	+	0	ID=cds-WP_000493767.1;Parent=gene-C9F05_RS14375;Dbxref=GenBank:WP_000493767.1;Name=WP_000493767.1;gbkey=CDS;gene=hycF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461769.1;locus_tag=C9F05_RS14375;product=formate hydrogenlyase subunit HycF;protein_id=WP_000493767.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	36396	37163	.	+	.	ID=gene-C9F05_RS14380;Name=hycG;gbkey=Gene;gene=hycG;gene_biotype=protein_coding;locus_tag=C9F05_RS14380;old_locus_tag=C9F05_14790
NZ_PYKE01000219.1	Protein Homology	CDS	36396	37163	.	+	0	ID=cds-WP_000067419.1;Parent=gene-C9F05_RS14380;Dbxref=GenBank:WP_000067419.1;Name=WP_000067419.1;gbkey=CDS;gene=hycG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461768.1;locus_tag=C9F05_RS14380;product=formate hydrogenlyase subunit HycG;protein_id=WP_000067419.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	37160	37570	.	+	.	ID=gene-C9F05_RS14385;Name=C9F05_RS14385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14385;old_locus_tag=C9F05_14795
NZ_PYKE01000219.1	Protein Homology	CDS	37160	37570	.	+	0	ID=cds-WP_000003725.1;Parent=gene-C9F05_RS14385;Dbxref=GenBank:WP_000003725.1;Name=WP_000003725.1;Ontology_term=GO:0065003;gbkey=CDS;go_process=protein-containing complex assembly|0065003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461767.1;locus_tag=C9F05_RS14385;product=formate hydrogenlyase maturation HycH family protein;protein_id=WP_000003725.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	37563	38033	.	+	.	ID=gene-C9F05_RS14390;Name=hycI;gbkey=Gene;gene=hycI;gene_biotype=protein_coding;locus_tag=C9F05_RS14390;old_locus_tag=C9F05_14800
NZ_PYKE01000219.1	Protein Homology	CDS	37563	38033	.	+	0	ID=cds-WP_000132992.1;Parent=gene-C9F05_RS14390;Dbxref=GenBank:WP_000132992.1;Name=WP_000132992.1;Ontology_term=GO:0036211,GO:0004190;gbkey=CDS;gene=hycI;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461766.1;locus_tag=C9F05_RS14390;product=hydrogenase maturation peptidase HycI;protein_id=WP_000132992.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	38060	38869	.	+	.	ID=gene-C9F05_RS14395;Name=C9F05_RS14395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14395;old_locus_tag=C9F05_14805
NZ_PYKE01000219.1	Protein Homology	CDS	38060	38869	.	+	0	ID=cds-WP_023244857.1;Parent=gene-C9F05_RS14395;Dbxref=GenBank:WP_023244857.1;Name=WP_023244857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461765.1;locus_tag=C9F05_RS14395;product=hypothetical protein;protein_id=WP_023244857.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	39070	39615	.	+	.	ID=gene-C9F05_RS14400;Name=hydN;gbkey=Gene;gene=hydN;gene_biotype=protein_coding;locus_tag=C9F05_RS14400;old_locus_tag=C9F05_14810
NZ_PYKE01000219.1	Protein Homology	CDS	39070	39615	.	+	0	ID=cds-WP_001078791.1;Parent=gene-C9F05_RS14400;Dbxref=GenBank:WP_001078791.1;Name=WP_001078791.1;gbkey=CDS;gene=hydN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461764.1;locus_tag=C9F05_RS14400;product=electron transport protein HydN;protein_id=WP_001078791.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	39761	42001	.	+	.	ID=gene-C9F05_RS14405;Name=hypF;gbkey=Gene;gene=hypF;gene_biotype=protein_coding;locus_tag=C9F05_RS14405;old_locus_tag=C9F05_14815
NZ_PYKE01000219.1	Protein Homology	CDS	39761	42001	.	+	0	ID=cds-WP_114064069.1;Parent=gene-C9F05_RS14405;Dbxref=GenBank:WP_114064069.1;Name=WP_114064069.1;Ontology_term=GO:0036211,GO:0003998,GO:0016743,GO:0046872;gbkey=CDS;gene=hypF;go_function=acylphosphatase activity|0003998||IEA,carboxyl- or carbamoyltransferase activity|0016743||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461763.1;locus_tag=C9F05_RS14405;product=carbamoyltransferase HypF;protein_id=WP_114064069.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	42098	43231	.	-	.	ID=gene-C9F05_RS14410;Name=norW;gbkey=Gene;gene=norW;gene_biotype=protein_coding;locus_tag=C9F05_RS14410;old_locus_tag=C9F05_14820
NZ_PYKE01000219.1	Protein Homology	CDS	42098	43231	.	-	0	ID=cds-WP_001748723.1;Parent=gene-C9F05_RS14410;Dbxref=GenBank:WP_001748723.1;Name=WP_001748723.1;Ontology_term=GO:0016731;gbkey=CDS;gene=norW;go_function=oxidoreductase activity%2C acting on iron-sulfur proteins as donors%2C NAD or NADP as acceptor|0016731||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461762.1;locus_tag=C9F05_RS14410;product=NADH:flavorubredoxin reductase NorW;protein_id=WP_001748723.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	43228	44667	.	-	.	ID=gene-C9F05_RS14415;Name=norV;gbkey=Gene;gene=norV;gene_biotype=protein_coding;locus_tag=C9F05_RS14415;old_locus_tag=C9F05_14825
NZ_PYKE01000219.1	Protein Homology	CDS	43228	44667	.	-	0	ID=cds-WP_000026012.1;Parent=gene-C9F05_RS14415;Dbxref=GenBank:WP_000026012.1;Name=WP_000026012.1;Ontology_term=GO:0009055,GO:0010181,GO:0016966,GO:0046872;gbkey=CDS;gene=norV;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,nitric oxide reductase activity|0016966||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461761.1;locus_tag=C9F05_RS14415;product=anaerobic nitric oxide reductase flavorubredoxin;protein_id=WP_000026012.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	44853	46373	.	+	.	ID=gene-C9F05_RS14420;Name=norR;gbkey=Gene;gene=norR;gene_biotype=protein_coding;locus_tag=C9F05_RS14420;old_locus_tag=C9F05_14830
NZ_PYKE01000219.1	Protein Homology	CDS	44853	46373	.	+	0	ID=cds-WP_114064070.1;Parent=gene-C9F05_RS14420;Dbxref=GenBank:WP_114064070.1;Name=WP_114064070.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=norR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461760.1;locus_tag=C9F05_RS14420;product=nitric oxide reductase transcriptional regulator NorR;protein_id=WP_114064070.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	46370	47335	.	-	.	ID=gene-C9F05_RS14425;Name=gutQ;gbkey=Gene;gene=gutQ;gene_biotype=protein_coding;locus_tag=C9F05_RS14425;old_locus_tag=C9F05_14835
NZ_PYKE01000219.1	Protein Homology	CDS	46370	47335	.	-	0	ID=cds-WP_001278201.1;Parent=gene-C9F05_RS14425;Dbxref=GenBank:WP_001278201.1;Name=WP_001278201.1;gbkey=CDS;gene=gutQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311591.2;locus_tag=C9F05_RS14425;product=arabinose-5-phosphate isomerase GutQ;protein_id=WP_001278201.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	47328	48101	.	-	.	ID=gene-C9F05_RS14430;Name=srlR;gbkey=Gene;gene=srlR;gene_biotype=protein_coding;gene_synonym=gutR;locus_tag=C9F05_RS14430;old_locus_tag=C9F05_14840
NZ_PYKE01000219.1	Protein Homology	CDS	47328	48101	.	-	0	ID=cds-WP_000804536.1;Parent=gene-C9F05_RS14430;Dbxref=GenBank:WP_000804536.1;Name=WP_000804536.1;Ontology_term=GO:0045892,GO:0003700;gbkey=CDS;gene=srlR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461758.1;locus_tag=C9F05_RS14430;product=glucitol operon DNA-binding transcriptional repressor SrlR;protein_id=WP_000804536.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	48299	48658	.	-	.	ID=gene-C9F05_RS14435;Name=gutM;gbkey=Gene;gene=gutM;gene_biotype=protein_coding;locus_tag=C9F05_RS14435;old_locus_tag=C9F05_14845
NZ_PYKE01000219.1	Protein Homology	CDS	48299	48658	.	-	0	ID=cds-WP_000255198.1;Parent=gene-C9F05_RS14435;Dbxref=GenBank:WP_000255198.1;Name=WP_000255198.1;gbkey=CDS;gene=gutM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461757.1;locus_tag=C9F05_RS14435;product=transcriptional regulator GutM;protein_id=WP_000255198.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	48735	49514	.	-	.	ID=gene-C9F05_RS14440;Name=srlD;gbkey=Gene;gene=srlD;gene_biotype=protein_coding;locus_tag=C9F05_RS14440;old_locus_tag=C9F05_14850
NZ_PYKE01000219.1	Protein Homology	CDS	48735	49514	.	-	0	ID=cds-WP_001077372.1;Parent=gene-C9F05_RS14440;Dbxref=GenBank:WP_001077372.1;Name=WP_001077372.1;Ontology_term=GO:0016491;gbkey=CDS;gene=srlD;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461756.1;locus_tag=C9F05_RS14440;product=sorbitol-6-phosphate dehydrogenase;protein_id=WP_001077372.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	49526	49888	.	-	.	ID=gene-C9F05_RS14445;Name=srlB;gbkey=Gene;gene=srlB;gene_biotype=protein_coding;gene_synonym=gutB;locus_tag=C9F05_RS14445;old_locus_tag=C9F05_14855
NZ_PYKE01000219.1	Protein Homology	CDS	49526	49888	.	-	0	ID=cds-WP_000111555.1;Parent=gene-C9F05_RS14445;Dbxref=GenBank:WP_000111555.1;Name=WP_000111555.1;gbkey=CDS;gene=srlB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461755.1;locus_tag=C9F05_RS14445;product=PTS glucitol/sorbitol transporter subunit IIA;protein_id=WP_000111555.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	49900	50871	.	-	.	ID=gene-C9F05_RS14450;Name=srlE;gbkey=Gene;gene=srlE;gene_biotype=protein_coding;locus_tag=C9F05_RS14450;old_locus_tag=C9F05_14860
NZ_PYKE01000219.1	Protein Homology	CDS	49900	50871	.	-	0	ID=cds-WP_000199033.1;Parent=gene-C9F05_RS14450;Dbxref=GenBank:WP_000199033.1;Name=WP_000199033.1;Ontology_term=GO:0009401,GO:0015795,GO:0008982,GO:0016301;gbkey=CDS;gene=srlE;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,kinase activity|0016301||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,sorbitol transmembrane transport|0015795||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461754.1;locus_tag=C9F05_RS14450;product=PTS glucitol/sorbitol transporter subunit IIB;protein_id=WP_000199033.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	50868	51431	.	-	.	ID=gene-C9F05_RS14455;Name=srlA;gbkey=Gene;gene=srlA;gene_biotype=protein_coding;locus_tag=C9F05_RS14455;old_locus_tag=C9F05_14865
NZ_PYKE01000219.1	Protein Homology	CDS	50868	51431	.	-	0	ID=cds-WP_000573335.1;Parent=gene-C9F05_RS14455;Dbxref=GenBank:WP_000573335.1;Name=WP_000573335.1;Ontology_term=GO:0009401,GO:0015795;gbkey=CDS;gene=srlA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,sorbitol transmembrane transport|0015795||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461753.1;locus_tag=C9F05_RS14455;product=PTS glucitol/sorbitol transporter subunit IIC;protein_id=WP_000573335.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	51685	52764	.	+	.	ID=gene-C9F05_RS14460;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=C9F05_RS14460;old_locus_tag=C9F05_14870
NZ_PYKE01000219.1	Protein Homology	CDS	51685	52764	.	+	0	ID=cds-WP_135370402.1;Parent=gene-C9F05_RS14460;Dbxref=GenBank:WP_135370402.1;Name=WP_135370402.1;gbkey=CDS;gene=mltB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461752.1;locus_tag=C9F05_RS14460;product=lytic murein transglycosylase B;protein_id=WP_135370402.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	52801	53046	.	-	.	ID=gene-C9F05_RS23870;Name=C9F05_RS23870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23870;old_locus_tag=C9F05_14875
NZ_PYKE01000219.1	Protein Homology	CDS	52801	53046	.	-	0	ID=cds-WP_021000688.1;Parent=gene-C9F05_RS23870;Dbxref=GenBank:WP_021000688.1;Name=WP_021000688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000053775.1;locus_tag=C9F05_RS23870;product=hypothetical protein;protein_id=WP_021000688.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	53242	53739	.	+	.	ID=gene-C9F05_RS14470;Name=pncC;gbkey=Gene;gene=pncC;gene_biotype=protein_coding;locus_tag=C9F05_RS14470;old_locus_tag=C9F05_14880
NZ_PYKE01000219.1	Protein Homology	CDS	53242	53739	.	+	0	ID=cds-WP_000132239.1;Parent=gene-C9F05_RS14470;Dbxref=GenBank:WP_000132239.1;Name=WP_000132239.1;gbkey=CDS;gene=pncC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461751.1;locus_tag=C9F05_RS14470;product=nicotinamide-nucleotide amidase;protein_id=WP_000132239.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	53824	54885	.	+	.	ID=gene-C9F05_RS14475;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=C9F05_RS14475;old_locus_tag=C9F05_14885
NZ_PYKE01000219.1	Protein Homology	CDS	53824	54885	.	+	0	ID=cds-WP_000963152.1;Parent=gene-C9F05_RS14475;Dbxref=GenBank:WP_000963152.1;Name=WP_000963152.1;Ontology_term=GO:0006281,GO:0003677,GO:0003697,GO:0005524,GO:0008094;gbkey=CDS;gene=recA;go_function=DNA binding|0003677||IEA,single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461750.1;locus_tag=C9F05_RS14475;product=recombinase RecA;protein_id=WP_000963152.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	55001	55501	.	+	.	ID=gene-C9F05_RS14480;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=C9F05_RS14480;old_locus_tag=C9F05_14890
NZ_PYKE01000219.1	Protein Homology	CDS	55001	55501	.	+	0	ID=cds-WP_001294863.1;Parent=gene-C9F05_RS14480;Dbxref=GenBank:WP_001294863.1;Name=WP_001294863.1;gbkey=CDS;gene=recX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461749.1;locus_tag=C9F05_RS14480;product=recombination regulator RecX;protein_id=WP_001294863.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	55737	58367	.	+	.	ID=gene-C9F05_RS14490;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=C9F05_RS14490;old_locus_tag=C9F05_14900
NZ_PYKE01000219.1	Protein Homology	CDS	55737	58367	.	+	0	ID=cds-WP_135370403.1;Parent=gene-C9F05_RS14490;Dbxref=GenBank:WP_135370403.1;Name=WP_135370403.1;Ontology_term=GO:0006419,GO:0000166,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461748.1;locus_tag=C9F05_RS14490;product=alanine--tRNA ligase;protein_id=WP_135370403.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	58602	58787	.	+	.	ID=gene-C9F05_RS14495;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;locus_tag=C9F05_RS14495;old_locus_tag=C9F05_14905
NZ_PYKE01000219.1	Protein Homology	CDS	58602	58787	.	+	0	ID=cds-WP_000906486.1;Parent=gene-C9F05_RS14495;Dbxref=GenBank:WP_000906486.1;Name=WP_000906486.1;gbkey=CDS;gene=csrA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001774971.1;locus_tag=C9F05_RS14495;product=carbon storage regulator CsrA;protein_id=WP_000906486.1;transl_table=11
NZ_PYKE01000219.1	RefSeq	gene	59091	59183	.	+	.	ID=gene-C9F05_RS14500;Name=C9F05_RS14500;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS14500;old_locus_tag=C9F05_14915
NZ_PYKE01000219.1	tRNAscan-SE	tRNA	59091	59183	.	+	.	ID=rna-C9F05_RS14500;Parent=gene-C9F05_RS14500;anticodon=(pos:59125..59127);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS14500;product=tRNA-Ser
NZ_PYKE01000219.1	tRNAscan-SE	exon	59091	59183	.	+	.	ID=exon-C9F05_RS14500-1;Parent=rna-C9F05_RS14500;anticodon=(pos:59125..59127);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS14500;product=tRNA-Ser
NZ_PYKE01000219.1	RefSeq	gene	59187	59263	.	+	.	ID=gene-C9F05_RS14505;Name=C9F05_RS14505;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS14505;old_locus_tag=C9F05_14920
NZ_PYKE01000219.1	tRNAscan-SE	tRNA	59187	59263	.	+	.	ID=rna-C9F05_RS14505;Parent=gene-C9F05_RS14505;anticodon=(pos:59221..59223);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS14505;product=tRNA-Arg
NZ_PYKE01000219.1	tRNAscan-SE	exon	59187	59263	.	+	.	ID=exon-C9F05_RS14505-1;Parent=rna-C9F05_RS14505;anticodon=(pos:59221..59223);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS14505;product=tRNA-Arg
##sequence-region NZ_PYKE01000324.1 1 544
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000324.1	RefSeq	region	1	544	.	+	.	ID=NZ_PYKE01000324.1:1..544;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000324.1	RefSeq	pseudogene	12	355	.	-	.	ID=gene-C9F05_RS22195;Name=C9F05_RS22195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS22195;old_locus_tag=C9F05_22780;pseudo=true
NZ_PYKE01000324.1	Protein Homology	CDS	12	355	.	-	0	ID=cds-C9F05_RS22195;Parent=gene-C9F05_RS22195;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463025.1;locus_tag=C9F05_RS22195;product=cytoplasmic protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000083.1 1 18635
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000083.1	RefSeq	region	1	18635	.	+	.	ID=NZ_PYKE01000083.1:1..18635;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000083.1	RefSeq	gene	316	624	.	-	.	ID=gene-C9F05_RS05620;Name=C9F05_RS05620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05620;old_locus_tag=C9F05_05715
NZ_PYKE01000083.1	Protein Homology	CDS	316	624	.	-	0	ID=cds-WP_001199743.1;Parent=gene-C9F05_RS05620;Dbxref=GenBank:WP_001199743.1;Name=WP_001199743.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001199743.1;locus_tag=C9F05_RS05620;product=CcdB family protein;protein_id=WP_001199743.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	627	866	.	-	.	ID=gene-C9F05_RS05625;Name=C9F05_RS05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05625;old_locus_tag=C9F05_05720
NZ_PYKE01000083.1	Protein Homology	CDS	627	866	.	-	0	ID=cds-WP_000016244.1;Parent=gene-C9F05_RS05625;Dbxref=GenBank:WP_000016244.1;Name=WP_000016244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001118105.1;locus_tag=C9F05_RS05625;product=type II toxin-antitoxin system CcdA family antitoxin;protein_id=WP_000016244.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	979	1227	.	-	.	ID=gene-C9F05_RS05630;Name=C9F05_RS05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05630;old_locus_tag=C9F05_05725
NZ_PYKE01000083.1	Protein Homology	CDS	979	1227	.	-	0	ID=cds-WP_050068098.1;Parent=gene-C9F05_RS05630;Dbxref=GenBank:WP_050068098.1;Name=WP_050068098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000168389.1;locus_tag=C9F05_RS05630;product=CopG family ribbon-helix-helix protein;protein_id=WP_050068098.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	pseudogene	1304	1612	.	-	.	ID=gene-C9F05_RS05635;Name=C9F05_RS05635;end_range=1612,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS05635;old_locus_tag=C9F05_05730;partial=true;pseudo=true
NZ_PYKE01000083.1	Protein Homology	CDS	1304	1612	.	-	0	ID=cds-C9F05_RS05635;Parent=gene-C9F05_RS05635;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1612,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014227719.1;locus_tag=C9F05_RS05635;partial=true;product=DUF4942 domain-containing protein;pseudo=true;transl_table=11
NZ_PYKE01000083.1	RefSeq	pseudogene	1632	2609	.	-	.	ID=gene-C9F05_RS05640;Name=C9F05_RS05640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS05640;old_locus_tag=C9F05_05735;pseudo=true
NZ_PYKE01000083.1	Protein Homology	CDS	1632	2609	.	-	0	ID=cds-C9F05_RS05640;Parent=gene-C9F05_RS05640;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041206064.1;locus_tag=C9F05_RS05640;product=IS630 family transposase;pseudo=true;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	3059	3143	.	-	.	ID=gene-C9F05_RS05645;Name=C9F05_RS05645;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS05645;old_locus_tag=C9F05_05740
NZ_PYKE01000083.1	tRNAscan-SE	tRNA	3059	3143	.	-	.	ID=rna-C9F05_RS05645;Parent=gene-C9F05_RS05645;anticodon=(pos:complement(3107..3109));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS05645;product=tRNA-Leu
NZ_PYKE01000083.1	tRNAscan-SE	exon	3059	3143	.	-	.	ID=exon-C9F05_RS05645-1;Parent=rna-C9F05_RS05645;anticodon=(pos:complement(3107..3109));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS05645;product=tRNA-Leu
NZ_PYKE01000083.1	RefSeq	gene	3366	4385	.	+	.	ID=gene-C9F05_RS05650;Name=ahr;gbkey=Gene;gene=ahr;gene_biotype=protein_coding;locus_tag=C9F05_RS05650;old_locus_tag=C9F05_05745
NZ_PYKE01000083.1	Protein Homology	CDS	3366	4385	.	+	0	ID=cds-WP_135370098.1;Parent=gene-C9F05_RS05650;Dbxref=GenBank:WP_135370098.1;Name=WP_135370098.1;Ontology_term=GO:0006631,GO:0008106,GO:0016616;gbkey=CDS;gene=ahr;go_function=alcohol dehydrogenase (NADP+) activity|0008106||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463346.1;locus_tag=C9F05_RS05650;product=NADPH-dependent aldehyde reductase Ahr;protein_id=WP_135370098.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	4413	4943	.	-	.	ID=gene-C9F05_RS05655;Name=idnK;gbkey=Gene;gene=idnK;gene_biotype=protein_coding;locus_tag=C9F05_RS05655;old_locus_tag=C9F05_05750
NZ_PYKE01000083.1	Protein Homology	CDS	4413	4943	.	-	0	ID=cds-WP_000896756.1;Parent=gene-C9F05_RS05655;Dbxref=GenBank:WP_000896756.1;Name=WP_000896756.1;gbkey=CDS;gene=idnK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463345.1;locus_tag=C9F05_RS05655;product=gluconokinase;protein_id=WP_000896756.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	5160	6191	.	+	.	ID=gene-C9F05_RS05660;Name=idnD;gbkey=Gene;gene=idnD;gene_biotype=protein_coding;locus_tag=C9F05_RS05660;old_locus_tag=C9F05_05755
NZ_PYKE01000083.1	Protein Homology	CDS	5160	6191	.	+	0	ID=cds-WP_023204850.1;Parent=gene-C9F05_RS05660;Dbxref=GenBank:WP_023204850.1;Name=WP_023204850.1;gbkey=CDS;gene=idnD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463344.1;locus_tag=C9F05_RS05660;product=L-idonate 5-dehydrogenase;protein_id=WP_023204850.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	6216	6980	.	+	.	ID=gene-C9F05_RS05665;Name=idnO;gbkey=Gene;gene=idnO;gene_biotype=protein_coding;locus_tag=C9F05_RS05665;old_locus_tag=C9F05_05760
NZ_PYKE01000083.1	Protein Homology	CDS	6216	6980	.	+	0	ID=cds-WP_000998684.1;Parent=gene-C9F05_RS05665;Dbxref=GenBank:WP_000998684.1;Name=WP_000998684.1;gbkey=CDS;gene=idnO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463343.1;locus_tag=C9F05_RS05665;product=gluconate 5-dehydrogenase;protein_id=WP_000998684.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	7042	8361	.	+	.	ID=gene-C9F05_RS05670;Name=idnT;gbkey=Gene;gene=idnT;gene_biotype=protein_coding;locus_tag=C9F05_RS05670;old_locus_tag=C9F05_05765
NZ_PYKE01000083.1	Protein Homology	CDS	7042	8361	.	+	0	ID=cds-WP_001128356.1;Parent=gene-C9F05_RS05670;Dbxref=GenBank:WP_001128356.1;Name=WP_001128356.1;gbkey=CDS;gene=idnT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463342.1;locus_tag=C9F05_RS05670;product=gnt-II system L-idonate transporter;protein_id=WP_001128356.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	8425	9423	.	+	.	ID=gene-C9F05_RS05675;Name=idnR;gbkey=Gene;gene=idnR;gene_biotype=protein_coding;gene_synonym=gntH,yjgS;locus_tag=C9F05_RS05675;old_locus_tag=C9F05_05770
NZ_PYKE01000083.1	Protein Homology	CDS	8425	9423	.	+	0	ID=cds-WP_001244065.1;Parent=gene-C9F05_RS05675;Dbxref=GenBank:WP_001244065.1;Name=WP_001244065.1;Ontology_term=GO:0006355,GO:0019521,GO:0003700;gbkey=CDS;gene=idnR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,D-gluconate metabolic process|0019521||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463341.1;locus_tag=C9F05_RS05675;product=DNA-binding transcriptional regulator IdnR;protein_id=WP_001244065.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	9640	10722	.	-	.	ID=gene-C9F05_RS05680;Name=lptG;gbkey=Gene;gene=lptG;gene_biotype=protein_coding;locus_tag=C9F05_RS05680;old_locus_tag=C9F05_05775
NZ_PYKE01000083.1	Protein Homology	CDS	9640	10722	.	-	0	ID=cds-WP_001182242.1;Parent=gene-C9F05_RS05680;Dbxref=GenBank:WP_001182242.1;Name=WP_001182242.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptG;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463340.1;locus_tag=C9F05_RS05680;product=LPS export ABC transporter permease LptG;protein_id=WP_001182242.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	10722	11822	.	-	.	ID=gene-C9F05_RS05685;Name=lptF;gbkey=Gene;gene=lptF;gene_biotype=protein_coding;locus_tag=C9F05_RS05685;old_locus_tag=C9F05_05780
NZ_PYKE01000083.1	Protein Homology	CDS	10722	11822	.	-	0	ID=cds-WP_000584132.1;Parent=gene-C9F05_RS05685;Dbxref=GenBank:WP_000584132.1;Name=WP_000584132.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptF;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463339.1;locus_tag=C9F05_RS05685;product=LPS export ABC transporter permease LptF;protein_id=WP_000584132.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	11886	11936	.	-	.	ID=gene-C9F05_RS23650;Name=C9F05_RS23650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23650
NZ_PYKE01000083.1	Protein Homology	CDS	11886	11936	.	-	0	ID=cds-WP_212724070.1;Parent=gene-C9F05_RS23650;Dbxref=GenBank:WP_212724070.1;Name=WP_212724070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051214.1;locus_tag=C9F05_RS23650;product=hypothetical protein;protein_id=WP_212724070.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	12217	13728	.	+	.	ID=gene-C9F05_RS05695;Name=pepA;gbkey=Gene;gene=pepA;gene_biotype=protein_coding;locus_tag=C9F05_RS05695;old_locus_tag=C9F05_05795
NZ_PYKE01000083.1	Protein Homology	CDS	12217	13728	.	+	0	ID=cds-WP_000397158.1;Parent=gene-C9F05_RS05695;Dbxref=GenBank:WP_000397158.1;Name=WP_000397158.1;Ontology_term=GO:0006508,GO:0019538,GO:0030145,GO:0070006;gbkey=CDS;gene=pepA;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA,protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463337.1;locus_tag=C9F05_RS05695;product=leucyl aminopeptidase;protein_id=WP_000397158.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	13865	14308	.	+	.	ID=gene-C9F05_RS05700;Name=holC;gbkey=Gene;gene=holC;gene_biotype=protein_coding;locus_tag=C9F05_RS05700;old_locus_tag=C9F05_05800
NZ_PYKE01000083.1	Protein Homology	CDS	13865	14308	.	+	0	ID=cds-WP_001523689.1;Parent=gene-C9F05_RS05700;Dbxref=GenBank:WP_001523689.1;Name=WP_001523689.1;gbkey=CDS;gene=holC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004098129.1;locus_tag=C9F05_RS05700;product=DNA polymerase III subunit chi;protein_id=WP_001523689.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	14308	17163	.	+	.	ID=gene-C9F05_RS05705;Name=C9F05_RS05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05705;old_locus_tag=C9F05_05805
NZ_PYKE01000083.1	Protein Homology	CDS	14308	17163	.	+	0	ID=cds-WP_064043035.1;Parent=gene-C9F05_RS05705;Dbxref=GenBank:WP_064043035.1;Name=WP_064043035.1;Ontology_term=GO:0006438,GO:0000166,GO:0004812,GO:0004832,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,valine-tRNA ligase activity|0004832||IEA,ATP binding|0005524||IEA;go_process=valyl-tRNA aminoacylation|0006438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000416368.1;locus_tag=C9F05_RS05705;product=valine--tRNA ligase;protein_id=WP_064043035.1;transl_table=11
NZ_PYKE01000083.1	RefSeq	gene	17305	18492	.	-	.	ID=gene-C9F05_RS05710;Name=C9F05_RS05710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05710;old_locus_tag=C9F05_05810
NZ_PYKE01000083.1	Protein Homology	CDS	17305	18492	.	-	0	ID=cds-WP_001066974.1;Parent=gene-C9F05_RS05710;Dbxref=GenBank:WP_001066974.1;Name=WP_001066974.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463334.1;locus_tag=C9F05_RS05710;product=YjgN family protein;protein_id=WP_001066974.1;transl_table=11
##sequence-region NZ_PYKE01000021.1 1 512
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000021.1	RefSeq	region	1	512	.	+	.	ID=NZ_PYKE01000021.1:1..512;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000021.1	RefSeq	gene	37	512	.	-	.	ID=gene-C9F05_RS00975;Name=C9F05_RS00975;end_range=512,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00975;old_locus_tag=C9F05_00985;partial=true
NZ_PYKE01000021.1	Protein Homology	CDS	37	512	.	-	2	ID=cds-WP_135369946.1;Parent=gene-C9F05_RS00975;Dbxref=GenBank:WP_135369946.1;Name=WP_135369946.1;end_range=512,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9F05_RS00975;partial=true;product=biotin/lipoyl-containing protein;protein_id=WP_135369946.1;transl_table=11
##sequence-region NZ_PYKE01000107.1 1 18455
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000107.1	RefSeq	region	1	18455	.	+	.	ID=NZ_PYKE01000107.1:1..18455;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000107.1	RefSeq	gene	195	725	.	-	.	ID=gene-C9F05_RS07905;Name=cybB;gbkey=Gene;gene=cybB;gene_biotype=protein_coding;locus_tag=C9F05_RS07905;old_locus_tag=C9F05_08090
NZ_PYKE01000107.1	Protein Homology	CDS	195	725	.	-	0	ID=cds-WP_000527277.1;Parent=gene-C9F05_RS07905;Dbxref=GenBank:WP_000527277.1;Name=WP_000527277.1;Ontology_term=GO:0022904,GO:0009055,GO:0016020;gbkey=CDS;gene=cybB;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460598.1;locus_tag=C9F05_RS07905;product=cytochrome b561;protein_id=WP_000527277.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	842	1642	.	-	.	ID=gene-C9F05_RS07910;Name=C9F05_RS07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07910;old_locus_tag=C9F05_08095
NZ_PYKE01000107.1	Protein Homology	CDS	842	1642	.	-	0	ID=cds-WP_023242334.1;Parent=gene-C9F05_RS07910;Dbxref=GenBank:WP_023242334.1;Name=WP_023242334.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460599.1;locus_tag=C9F05_RS07910;product=YdcF family protein;protein_id=WP_023242334.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	1706	5608	.	-	.	ID=gene-C9F05_RS07915;Name=hrpA;gbkey=Gene;gene=hrpA;gene_biotype=protein_coding;locus_tag=C9F05_RS07915;old_locus_tag=C9F05_08100
NZ_PYKE01000107.1	Protein Homology	CDS	1706	5608	.	-	0	ID=cds-WP_115409372.1;Parent=gene-C9F05_RS07915;Dbxref=GenBank:WP_115409372.1;Name=WP_115409372.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=hrpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460600.3;locus_tag=C9F05_RS07915;product=ATP-dependent RNA helicase HrpA;protein_id=WP_115409372.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	5809	6414	.	+	.	ID=gene-C9F05_RS07920;Name=azoR;gbkey=Gene;gene=azoR;gene_biotype=protein_coding;locus_tag=C9F05_RS07920;old_locus_tag=C9F05_08105
NZ_PYKE01000107.1	Protein Homology	CDS	5809	6414	.	+	0	ID=cds-WP_000048924.1;Parent=gene-C9F05_RS07920;Dbxref=GenBank:WP_000048924.1;Name=WP_000048924.1;gbkey=CDS;gene=azoR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460601.1;locus_tag=C9F05_RS07920;product=FMN-dependent NADH-azoreductase;protein_id=WP_000048924.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	6411	6860	.	-	.	ID=gene-C9F05_RS07925;Name=C9F05_RS07925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07925;old_locus_tag=C9F05_08110
NZ_PYKE01000107.1	Protein Homology	CDS	6411	6860	.	-	0	ID=cds-WP_001531579.1;Parent=gene-C9F05_RS07925;Dbxref=GenBank:WP_001531579.1;Name=WP_001531579.1;Ontology_term=GO:0016846,GO:0046872;gbkey=CDS;go_function=carbon-sulfur lyase activity|0016846||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460602.1;locus_tag=C9F05_RS07925;product=GFA family protein;protein_id=WP_001531579.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	7003	7326	.	-	.	ID=gene-C9F05_RS07930;Name=C9F05_RS07930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07930;old_locus_tag=C9F05_08115
NZ_PYKE01000107.1	Protein Homology	CDS	7003	7326	.	-	0	ID=cds-WP_000760414.1;Parent=gene-C9F05_RS07930;Dbxref=GenBank:WP_000760414.1;Name=WP_000760414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460603.1;locus_tag=C9F05_RS07930;product=YdbL family protein;protein_id=WP_000760414.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	7334	7525	.	-	.	ID=gene-C9F05_RS07935;Name=C9F05_RS07935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07935;old_locus_tag=C9F05_08120
NZ_PYKE01000107.1	Protein Homology	CDS	7334	7525	.	-	0	ID=cds-WP_000784063.1;Parent=gene-C9F05_RS07935;Dbxref=GenBank:WP_000784063.1;Name=WP_000784063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460604.1;locus_tag=C9F05_RS07935;product=YnbE family lipoprotein;protein_id=WP_000784063.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	7525	10161	.	-	.	ID=gene-C9F05_RS07940;Name=C9F05_RS07940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07940;old_locus_tag=C9F05_08125
NZ_PYKE01000107.1	Protein Homology	CDS	7525	10161	.	-	0	ID=cds-WP_000677012.1;Parent=gene-C9F05_RS07940;Dbxref=GenBank:WP_000677012.1;Name=WP_000677012.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460605.1;locus_tag=C9F05_RS07940;product=YdbH family protein;protein_id=WP_000677012.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	10401	11390	.	+	.	ID=gene-C9F05_RS07945;Name=ldhA;gbkey=Gene;gene=ldhA;gene_biotype=protein_coding;locus_tag=C9F05_RS07945;old_locus_tag=C9F05_08130
NZ_PYKE01000107.1	Protein Homology	CDS	10401	11390	.	+	0	ID=cds-WP_000762206.1;Parent=gene-C9F05_RS07945;Dbxref=GenBank:WP_000762206.1;Name=WP_000762206.1;gbkey=CDS;gene=ldhA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460606.1;locus_tag=C9F05_RS07945;product=D-lactate dehydrogenase;protein_id=WP_000762206.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	11501	11911	.	+	.	ID=gene-C9F05_RS07950;Name=hslJ;gbkey=Gene;gene=hslJ;gene_biotype=protein_coding;locus_tag=C9F05_RS07950;old_locus_tag=C9F05_08135
NZ_PYKE01000107.1	Protein Homology	CDS	11501	11911	.	+	0	ID=cds-WP_000750316.1;Parent=gene-C9F05_RS07950;Dbxref=GenBank:WP_000750316.1;Name=WP_000750316.1;gbkey=CDS;gene=hslJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460607.1;locus_tag=C9F05_RS07950;product=heat shock protein HslJ;protein_id=WP_000750316.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	11955	12221	.	-	.	ID=gene-C9F05_RS07955;Name=C9F05_RS07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07955;old_locus_tag=C9F05_08140
NZ_PYKE01000107.1	Protein Homology	CDS	11955	12221	.	-	0	ID=cds-WP_001200680.1;Parent=gene-C9F05_RS07955;Dbxref=GenBank:WP_001200680.1;Name=WP_001200680.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588453.1;locus_tag=C9F05_RS07955;product=putative hemolysin;protein_id=WP_001200680.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	12125	12436	.	+	.	ID=gene-C9F05_RS07960;Name=C9F05_RS07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07960;old_locus_tag=C9F05_08145
NZ_PYKE01000107.1	Protein Homology	CDS	12125	12436	.	+	0	ID=cds-WP_031609604.1;Parent=gene-C9F05_RS07960;Dbxref=GenBank:WP_031609604.1;Name=WP_031609604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460609.1;locus_tag=C9F05_RS07960;product=hypothetical protein;protein_id=WP_031609604.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	12497	16021	.	+	.	ID=gene-C9F05_RS07965;Name=nifJ;gbkey=Gene;gene=nifJ;gene_biotype=protein_coding;locus_tag=C9F05_RS07965;old_locus_tag=C9F05_08150
NZ_PYKE01000107.1	Protein Homology	CDS	12497	16021	.	+	0	ID=cds-WP_135370166.1;Parent=gene-C9F05_RS07965;Dbxref=GenBank:WP_135370166.1;Name=WP_135370166.1;Ontology_term=GO:0022900,GO:0005506,GO:0016903,GO:0030976;gbkey=CDS;gene=nifJ;go_function=iron ion binding|0005506||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors|0016903||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460610.1;locus_tag=C9F05_RS07965;product=pyruvate:ferredoxin (flavodoxin) oxidoreductase;protein_id=WP_135370166.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	16503	16937	.	+	.	ID=gene-C9F05_RS07970;Name=uspF;gbkey=Gene;gene=uspF;gene_biotype=protein_coding;locus_tag=C9F05_RS07970;old_locus_tag=C9F05_08160
NZ_PYKE01000107.1	Protein Homology	CDS	16503	16937	.	+	0	ID=cds-WP_001082296.1;Parent=gene-C9F05_RS07970;Dbxref=GenBank:WP_001082296.1;Name=WP_001082296.1;gbkey=CDS;gene=uspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460611.1;locus_tag=C9F05_RS07970;product=universal stress protein UspF;protein_id=WP_001082296.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	16990	17328	.	-	.	ID=gene-C9F05_RS07975;Name=C9F05_RS07975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07975;old_locus_tag=C9F05_08165
NZ_PYKE01000107.1	Protein Homology	CDS	16990	17328	.	-	0	ID=cds-WP_000159242.1;Parent=gene-C9F05_RS07975;Dbxref=GenBank:WP_000159242.1;Name=WP_000159242.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460612.1;locus_tag=C9F05_RS07975;product=SMR family transporter;protein_id=WP_000159242.1;transl_table=11
NZ_PYKE01000107.1	RefSeq	gene	17602	18455	.	-	.	ID=gene-C9F05_RS07980;Name=C9F05_RS07980;end_range=18455,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07980;old_locus_tag=C9F05_08170;partial=true
NZ_PYKE01000107.1	Protein Homology	CDS	17602	18455	.	-	2	ID=cds-WP_135370167.1;Parent=gene-C9F05_RS07980;Dbxref=GenBank:WP_135370167.1;Name=WP_135370167.1;end_range=18455,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835222.1;locus_tag=C9F05_RS07980;partial=true;product=DUF4765 family protein;protein_id=WP_135370167.1;transl_table=11
##sequence-region NZ_PYKE01000268.1 1 482
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000268.1	RefSeq	region	1	482	.	+	.	ID=NZ_PYKE01000268.1:1..482;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000268.1	RefSeq	pseudogene	116	372	.	+	.	ID=gene-C9F05_RS17925;Name=C9F05_RS17925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS17925;old_locus_tag=C9F05_18435;pseudo=true
NZ_PYKE01000268.1	Protein Homology	CDS	116	372	.	+	0	ID=cds-C9F05_RS17925;Parent=gene-C9F05_RS17925;Note=frameshifted%3B internal stop;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000994230.1;locus_tag=C9F05_RS17925;product=SymE family type I addiction module toxin;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000321.1 1 18424
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000321.1	RefSeq	region	1	18424	.	+	.	ID=NZ_PYKE01000321.1:1..18424;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000321.1	RefSeq	gene	211	286	.	-	.	ID=gene-C9F05_RS22075;Name=C9F05_RS22075;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS22075;old_locus_tag=C9F05_22660
NZ_PYKE01000321.1	tRNAscan-SE	tRNA	211	286	.	-	.	ID=rna-C9F05_RS22075;Parent=gene-C9F05_RS22075;anticodon=(pos:complement(251..253));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS22075;product=tRNA-Gly
NZ_PYKE01000321.1	tRNAscan-SE	exon	211	286	.	-	.	ID=exon-C9F05_RS22075-1;Parent=rna-C9F05_RS22075;anticodon=(pos:complement(251..253));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS22075;product=tRNA-Gly
NZ_PYKE01000321.1	RefSeq	gene	562	1302	.	+	.	ID=gene-C9F05_RS22080;Name=C9F05_RS22080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22080;old_locus_tag=C9F05_22665
NZ_PYKE01000321.1	Protein Homology	CDS	562	1302	.	+	0	ID=cds-WP_000727892.1;Parent=gene-C9F05_RS22080;Dbxref=GenBank:WP_000727892.1;Name=WP_000727892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463215.3;locus_tag=C9F05_RS22080;product=arginine ABC transporter substrate-binding protein;protein_id=WP_000727892.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	1364	1909	.	-	.	ID=gene-C9F05_RS22085;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=C9F05_RS22085;old_locus_tag=C9F05_22670
NZ_PYKE01000321.1	Protein Homology	CDS	1364	1909	.	-	0	ID=cds-WP_001271546.1;Parent=gene-C9F05_RS22085;Dbxref=GenBank:WP_001271546.1;Name=WP_001271546.1;Ontology_term=GO:0000175,GO:0003676;gbkey=CDS;gene=orn;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882950.1;locus_tag=C9F05_RS22085;product=oligoribonuclease;protein_id=WP_001271546.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	2016	3068	.	+	.	ID=gene-C9F05_RS22090;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=C9F05_RS22090;old_locus_tag=C9F05_22675
NZ_PYKE01000321.1	Protein Homology	CDS	2016	3068	.	+	0	ID=cds-WP_000041945.1;Parent=gene-C9F05_RS22090;Dbxref=GenBank:WP_000041945.1;Name=WP_000041945.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=rsgA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313167.2;locus_tag=C9F05_RS22090;product=small ribosomal subunit biogenesis GTPase RsgA;protein_id=WP_000041945.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	3161	4129	.	+	.	ID=gene-C9F05_RS22095;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=C9F05_RS22095;old_locus_tag=C9F05_22680
NZ_PYKE01000321.1	Protein Homology	CDS	3161	4129	.	+	0	ID=cds-WP_000934949.1;Parent=gene-C9F05_RS22095;Dbxref=GenBank:WP_000934949.1;Name=WP_000934949.1;Note=Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein.;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=asd;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463212.1;locus_tag=C9F05_RS22095;product=archaetidylserine decarboxylase;protein_id=WP_000934949.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	4148	7474	.	+	.	ID=gene-C9F05_RS22100;Name=mscM;gbkey=Gene;gene=mscM;gene_biotype=protein_coding;locus_tag=C9F05_RS22100;old_locus_tag=C9F05_22685
NZ_PYKE01000321.1	Protein Homology	CDS	4148	7474	.	+	0	ID=cds-WP_001236755.1;Parent=gene-C9F05_RS22100;Dbxref=GenBank:WP_001236755.1;Name=WP_001236755.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscM;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463211.1;locus_tag=C9F05_RS22100;product=miniconductance mechanosensitive channel MscM;protein_id=WP_001236755.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	7541	7855	.	-	.	ID=gene-C9F05_RS22105;Name=C9F05_RS22105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22105;old_locus_tag=C9F05_22690
NZ_PYKE01000321.1	Protein Homology	CDS	7541	7855	.	-	0	ID=cds-WP_135370638.1;Parent=gene-C9F05_RS22105;Dbxref=GenBank:WP_135370638.1;Name=WP_135370638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463210.1;locus_tag=C9F05_RS22105;product=YjeO family protein;protein_id=WP_135370638.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	7907	9409	.	-	.	ID=gene-C9F05_RS22110;Name=yjeM;gbkey=Gene;gene=yjeM;gene_biotype=protein_coding;locus_tag=C9F05_RS22110;old_locus_tag=C9F05_22695
NZ_PYKE01000321.1	Protein Homology	CDS	7907	9409	.	-	0	ID=cds-WP_000149876.1;Parent=gene-C9F05_RS22110;Dbxref=GenBank:WP_000149876.1;Name=WP_000149876.1;Ontology_term=GO:0022857;gbkey=CDS;gene=yjeM;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463209.1;locus_tag=C9F05_RS22110;product=glutamate/gamma-aminobutyrate family transporter YjeM;protein_id=WP_000149876.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	9635	10612	.	-	.	ID=gene-C9F05_RS22115;Name=epmA;gbkey=Gene;gene=epmA;gene_biotype=protein_coding;locus_tag=C9F05_RS22115;old_locus_tag=C9F05_22700
NZ_PYKE01000321.1	Protein Homology	CDS	9635	10612	.	-	0	ID=cds-WP_000004797.1;Parent=gene-C9F05_RS22115;Dbxref=GenBank:WP_000004797.1;Name=WP_000004797.1;Ontology_term=GO:0006418,GO:0004812;gbkey=CDS;gene=epmA;go_function=aminoacyl-tRNA ligase activity|0004812||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000004771.1;locus_tag=C9F05_RS22115;product=elongation factor P--(R)-beta-lysine ligase;protein_id=WP_000004797.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	10935	12725	.	+	.	ID=gene-C9F05_RS22120;Name=frdA;gbkey=Gene;gene=frdA;gene_biotype=protein_coding;locus_tag=C9F05_RS22120;old_locus_tag=C9F05_22705
NZ_PYKE01000321.1	Protein Homology	CDS	10935	12725	.	+	0	ID=cds-WP_001192954.1;Parent=gene-C9F05_RS22120;Dbxref=GenBank:WP_001192954.1;Name=WP_001192954.1;Ontology_term=GO:0009061,GO:0022900,GO:0016491,GO:0050660;gbkey=CDS;gene=frdA;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=anaerobic respiration|0009061||IEA,electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463207.1;locus_tag=C9F05_RS22120;product=fumarate reductase (quinol) flavoprotein subunit;protein_id=WP_001192954.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	12718	13452	.	+	.	ID=gene-C9F05_RS22125;Name=frdB;gbkey=Gene;gene=frdB;gene_biotype=protein_coding;locus_tag=C9F05_RS22125;old_locus_tag=C9F05_22710
NZ_PYKE01000321.1	Protein Homology	CDS	12718	13452	.	+	0	ID=cds-WP_000829509.1;Parent=gene-C9F05_RS22125;Dbxref=GenBank:WP_000829509.1;Name=WP_000829509.1;gbkey=CDS;gene=frdB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882957.1;locus_tag=C9F05_RS22125;product=fumarate reductase iron-sulfur protein;protein_id=WP_000829509.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	13463	13858	.	+	.	ID=gene-C9F05_RS22130;Name=frdC;gbkey=Gene;gene=frdC;gene_biotype=protein_coding;locus_tag=C9F05_RS22130;old_locus_tag=C9F05_22715
NZ_PYKE01000321.1	Protein Homology	CDS	13463	13858	.	+	0	ID=cds-WP_000208749.1;Parent=gene-C9F05_RS22130;Dbxref=GenBank:WP_000208749.1;Name=WP_000208749.1;Ontology_term=GO:0016020;gbkey=CDS;gene=frdC;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463205.1;locus_tag=C9F05_RS22130;product=fumarate reductase subunit FrdC;protein_id=WP_000208749.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	13869	14228	.	+	.	ID=gene-C9F05_RS22135;Name=frdD;gbkey=Gene;gene=frdD;gene_biotype=protein_coding;locus_tag=C9F05_RS22135;old_locus_tag=C9F05_22720
NZ_PYKE01000321.1	Protein Homology	CDS	13869	14228	.	+	0	ID=cds-WP_000609650.1;Parent=gene-C9F05_RS22135;Dbxref=GenBank:WP_000609650.1;Name=WP_000609650.1;gbkey=CDS;gene=frdD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463204.1;locus_tag=C9F05_RS22135;product=fumarate reductase subunit FrdD;protein_id=WP_000609650.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	14340	14873	.	+	.	ID=gene-C9F05_RS22140;Name=C9F05_RS22140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22140;old_locus_tag=C9F05_22725
NZ_PYKE01000321.1	Protein Homology	CDS	14340	14873	.	+	0	ID=cds-WP_001238398.1;Parent=gene-C9F05_RS22140;Dbxref=GenBank:WP_001238398.1;Name=WP_001238398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463203.1;locus_tag=C9F05_RS22140;product=lipocalin family protein;protein_id=WP_001238398.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	14890	15207	.	-	.	ID=gene-C9F05_RS22145;Name=sugE;gbkey=Gene;gene=sugE;gene_biotype=protein_coding;locus_tag=C9F05_RS22145;old_locus_tag=C9F05_22730
NZ_PYKE01000321.1	Protein Homology	CDS	14890	15207	.	-	0	ID=cds-WP_000118469.1;Parent=gene-C9F05_RS22145;Dbxref=GenBank:WP_000118469.1;Name=WP_000118469.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;gene=sugE;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463202.1;locus_tag=C9F05_RS22145;product=quaternary ammonium compound efflux SMR transporter SugE;protein_id=WP_000118469.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	15463	16050	.	+	.	ID=gene-C9F05_RS22150;Name=C9F05_RS22150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22150;old_locus_tag=C9F05_22735
NZ_PYKE01000321.1	Protein Homology	CDS	15463	16050	.	+	0	ID=cds-WP_000912959.1;Parent=gene-C9F05_RS22150;Dbxref=GenBank:WP_000912959.1;Name=WP_000912959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463201.1;locus_tag=C9F05_RS22150;product=helix-turn-helix transcriptional regulator;protein_id=WP_000912959.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	16081	16227	.	-	.	ID=gene-C9F05_RS22155;Name=ecnB;gbkey=Gene;gene=ecnB;gene_biotype=protein_coding;locus_tag=C9F05_RS22155;old_locus_tag=C9F05_22740
NZ_PYKE01000321.1	Protein Homology	CDS	16081	16227	.	-	0	ID=cds-WP_000239598.1;Parent=gene-C9F05_RS22155;Dbxref=GenBank:WP_000239598.1;Name=WP_000239598.1;gbkey=CDS;gene=ecnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463200.1;locus_tag=C9F05_RS22155;product=lipoprotein toxin entericidin B;protein_id=WP_000239598.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	16335	16469	.	-	.	ID=gene-C9F05_RS22165;Name=C9F05_RS22165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22165;old_locus_tag=C9F05_22750
NZ_PYKE01000321.1	Protein Homology	CDS	16335	16469	.	-	0	ID=cds-WP_000977687.1;Parent=gene-C9F05_RS22165;Dbxref=GenBank:WP_000977687.1;Name=WP_000977687.1;Ontology_term=GO:0009636,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=response to toxic substance|0009636||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026283.1;locus_tag=C9F05_RS22165;product=entericidin A/B family lipoprotein;protein_id=WP_000977687.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	16530	17096	.	-	.	ID=gene-C9F05_RS22170;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=C9F05_RS22170;old_locus_tag=C9F05_22755
NZ_PYKE01000321.1	Protein Homology	CDS	16530	17096	.	-	0	ID=cds-WP_000257282.1;Parent=gene-C9F05_RS22170;Dbxref=GenBank:WP_000257282.1;Name=WP_000257282.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004871142.1;locus_tag=C9F05_RS22170;product=elongation factor P;protein_id=WP_000257282.1;transl_table=11
NZ_PYKE01000321.1	RefSeq	gene	17137	18165	.	+	.	ID=gene-C9F05_RS22175;Name=epmB;gbkey=Gene;gene=epmB;gene_biotype=protein_coding;locus_tag=C9F05_RS22175;old_locus_tag=C9F05_22760
NZ_PYKE01000321.1	Protein Homology	CDS	17137	18165	.	+	0	ID=cds-WP_000940484.1;Parent=gene-C9F05_RS22175;Dbxref=GenBank:WP_000940484.1;Name=WP_000940484.1;gbkey=CDS;gene=epmB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463197.1;locus_tag=C9F05_RS22175;product=EF-P beta-lysylation protein EpmB;protein_id=WP_000940484.1;transl_table=11
##sequence-region NZ_PYKE01000303.1 1 458
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000303.1	RefSeq	region	1	458	.	+	.	ID=NZ_PYKE01000303.1:1..458;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000303.1	RefSeq	gene	62	137	.	+	.	ID=gene-C9F05_RS20715;Name=C9F05_RS20715;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS20715;old_locus_tag=C9F05_21295
NZ_PYKE01000303.1	tRNAscan-SE	tRNA	62	137	.	+	.	ID=rna-C9F05_RS20715;Parent=gene-C9F05_RS20715;anticodon=(pos:95..97);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS20715;product=tRNA-Thr
NZ_PYKE01000303.1	tRNAscan-SE	exon	62	137	.	+	.	ID=exon-C9F05_RS20715-1;Parent=rna-C9F05_RS20715;anticodon=(pos:95..97);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS20715;product=tRNA-Thr
NZ_PYKE01000303.1	RefSeq	gene	177	292	.	+	.	ID=gene-C9F05_RS20720;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9F05_RS20720;old_locus_tag=C9F05_21300
NZ_PYKE01000303.1	cmsearch	rRNA	177	292	.	+	.	ID=rna-C9F05_RS20720;Parent=gene-C9F05_RS20720;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS20720;product=5S ribosomal RNA
NZ_PYKE01000303.1	cmsearch	exon	177	292	.	+	.	ID=exon-C9F05_RS20720-1;Parent=rna-C9F05_RS20720;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS20720;product=5S ribosomal RNA
##sequence-region NZ_PYKE01000208.1 1 455
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000208.1	RefSeq	region	1	455	.	+	.	ID=NZ_PYKE01000208.1:1..455;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000208.1	RefSeq	pseudogene	81	455	.	-	.	ID=gene-C9F05_RS13415;Name=C9F05_RS13415;end_range=455,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS13415;old_locus_tag=C9F05_13795;partial=true;pseudo=true
NZ_PYKE01000208.1	Protein Homology	CDS	81	455	.	-	0	ID=cds-C9F05_RS13415;Parent=gene-C9F05_RS13415;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=455,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011233008.1;locus_tag=C9F05_RS13415;partial=true;product=transferase;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000031.1 1 452
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000031.1	RefSeq	region	1	452	.	+	.	ID=NZ_PYKE01000031.1:1..452;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000031.1	RefSeq	gene	76	152	.	+	.	ID=gene-C9F05_RS01940;Name=C9F05_RS01940;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS01940;old_locus_tag=C9F05_01975
NZ_PYKE01000031.1	tRNAscan-SE	tRNA	76	152	.	+	.	ID=rna-C9F05_RS01940;Parent=gene-C9F05_RS01940;anticodon=(pos:110..112);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01940;product=tRNA-Ile
NZ_PYKE01000031.1	tRNAscan-SE	exon	76	152	.	+	.	ID=exon-C9F05_RS01940-1;Parent=rna-C9F05_RS01940;anticodon=(pos:110..112);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01940;product=tRNA-Ile
NZ_PYKE01000031.1	RefSeq	gene	262	337	.	+	.	ID=gene-C9F05_RS01945;Name=C9F05_RS01945;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS01945;old_locus_tag=C9F05_01980
NZ_PYKE01000031.1	tRNAscan-SE	tRNA	262	337	.	+	.	ID=rna-C9F05_RS01945;Parent=gene-C9F05_RS01945;anticodon=(pos:295..297);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01945;product=tRNA-Ala
NZ_PYKE01000031.1	tRNAscan-SE	exon	262	337	.	+	.	ID=exon-C9F05_RS01945-1;Parent=rna-C9F05_RS01945;anticodon=(pos:295..297);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01945;product=tRNA-Ala
##sequence-region NZ_PYKE01000312.1 1 18049
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000312.1	RefSeq	region	1	18049	.	+	.	ID=NZ_PYKE01000312.1:1..18049;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000312.1	RefSeq	gene	95	1234	.	+	.	ID=gene-C9F05_RS21260;Name=arnB;gbkey=Gene;gene=arnB;gene_biotype=protein_coding;locus_tag=C9F05_RS21260;old_locus_tag=C9F05_21850
NZ_PYKE01000312.1	Protein Homology	CDS	95	1234	.	+	0	ID=cds-WP_001279284.1;Parent=gene-C9F05_RS21260;Dbxref=GenBank:WP_001279284.1;Name=WP_001279284.1;Ontology_term=GO:0008483;gbkey=CDS;gene=arnB;go_function=transaminase activity|0008483||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_024188371.1;locus_tag=C9F05_RS21260;product=UDP-4-amino-4-deoxy-L-arabinose aminotransferase;protein_id=WP_001279284.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	1237	2220	.	+	.	ID=gene-C9F05_RS21265;Name=arnC;gbkey=Gene;gene=arnC;gene_biotype=protein_coding;locus_tag=C9F05_RS21265;old_locus_tag=C9F05_21855
NZ_PYKE01000312.1	Protein Homology	CDS	1237	2220	.	+	0	ID=cds-WP_000458893.1;Parent=gene-C9F05_RS21265;Dbxref=GenBank:WP_000458893.1;Name=WP_000458893.1;Ontology_term=GO:0016780;gbkey=CDS;gene=arnC;go_function=phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461240.1;locus_tag=C9F05_RS21265;product=undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase;protein_id=WP_000458893.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	2217	4199	.	+	.	ID=gene-C9F05_RS21270;Name=arnA;gbkey=Gene;gene=arnA;gene_biotype=protein_coding;locus_tag=C9F05_RS21270;old_locus_tag=C9F05_21860
NZ_PYKE01000312.1	Protein Homology	CDS	2217	4199	.	+	0	ID=cds-WP_135370621.1;Parent=gene-C9F05_RS21270;Dbxref=GenBank:WP_135370621.1;Name=WP_135370621.1;Ontology_term=GO:0009058,GO:0016742;gbkey=CDS;gene=arnA;go_function=hydroxymethyl-%2C formyl- and related transferase activity|0016742||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461241.1;locus_tag=C9F05_RS21270;product=bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;protein_id=WP_135370621.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	4196	5095	.	+	.	ID=gene-C9F05_RS21275;Name=arnD;gbkey=Gene;gene=arnD;gene_biotype=protein_coding;locus_tag=C9F05_RS21275;old_locus_tag=C9F05_21865
NZ_PYKE01000312.1	Protein Homology	CDS	4196	5095	.	+	0	ID=cds-WP_000169766.1;Parent=gene-C9F05_RS21275;Dbxref=GenBank:WP_000169766.1;Name=WP_000169766.1;Ontology_term=GO:0016810;gbkey=CDS;gene=arnD;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461242.1;locus_tag=C9F05_RS21275;product=4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase;protein_id=WP_000169766.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	5092	6738	.	+	.	ID=gene-C9F05_RS21280;Name=arnT;gbkey=Gene;gene=arnT;gene_biotype=protein_coding;locus_tag=C9F05_RS21280;old_locus_tag=C9F05_21870
NZ_PYKE01000312.1	Protein Homology	CDS	5092	6738	.	+	0	ID=cds-WP_000978038.1;Parent=gene-C9F05_RS21280;Dbxref=GenBank:WP_000978038.1;Name=WP_000978038.1;Ontology_term=GO:0006493,GO:0000030,GO:0016763,GO:0016020;gbkey=CDS;gene=arnT;go_component=membrane|0016020||IEA;go_function=mannosyltransferase activity|0000030||IEA,pentosyltransferase activity|0016763||IEA;go_process=protein O-linked glycosylation|0006493||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461243.1;locus_tag=C9F05_RS21280;product=lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase;protein_id=WP_000978038.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	6735	7070	.	+	.	ID=gene-C9F05_RS21285;Name=arnE;gbkey=Gene;gene=arnE;gene_biotype=protein_coding;locus_tag=C9F05_RS21285;old_locus_tag=C9F05_21875
NZ_PYKE01000312.1	Protein Homology	CDS	6735	7070	.	+	0	ID=cds-WP_000580688.1;Parent=gene-C9F05_RS21285;Dbxref=GenBank:WP_000580688.1;Name=WP_000580688.1;gbkey=CDS;gene=arnE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461244.1;locus_tag=C9F05_RS21285;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE;protein_id=WP_000580688.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	7070	7447	.	+	.	ID=gene-C9F05_RS21290;Name=arnF;gbkey=Gene;gene=arnF;gene_biotype=protein_coding;locus_tag=C9F05_RS21290;old_locus_tag=C9F05_21880
NZ_PYKE01000312.1	Protein Homology	CDS	7070	7447	.	+	0	ID=cds-WP_000538696.1;Parent=gene-C9F05_RS21290;Dbxref=GenBank:WP_000538696.1;Name=WP_000538696.1;gbkey=CDS;gene=arnF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461245.1;locus_tag=C9F05_RS21290;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF;protein_id=WP_000538696.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	7442	7699	.	-	.	ID=gene-C9F05_RS21295;Name=pmrD;gbkey=Gene;gene=pmrD;gene_biotype=protein_coding;locus_tag=C9F05_RS21295;old_locus_tag=C9F05_21885
NZ_PYKE01000312.1	Protein Homology	CDS	7442	7699	.	-	0	ID=cds-WP_000455132.1;Parent=gene-C9F05_RS21295;Dbxref=GenBank:WP_000455132.1;Name=WP_000455132.1;gbkey=CDS;gene=pmrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461246.1;locus_tag=C9F05_RS21295;product=signal transduction protein PmrD;protein_id=WP_000455132.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	7797	9164	.	-	.	ID=gene-C9F05_RS21300;Name=menE;gbkey=Gene;gene=menE;gene_biotype=protein_coding;locus_tag=C9F05_RS21300;old_locus_tag=C9F05_21890
NZ_PYKE01000312.1	Protein Homology	CDS	7797	9164	.	-	0	ID=cds-WP_135370622.1;Parent=gene-C9F05_RS21300;Dbxref=GenBank:WP_135370622.1;Name=WP_135370622.1;Ontology_term=GO:0009234,GO:0005524,GO:0008756;gbkey=CDS;gene=menE;go_function=ATP binding|0005524||IEA,o-succinylbenzoate-CoA ligase activity|0008756||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461247.1;locus_tag=C9F05_RS21300;product=o-succinylbenzoate--CoA ligase;protein_id=WP_135370622.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	9161	10123	.	-	.	ID=gene-C9F05_RS21305;Name=menC;gbkey=Gene;gene=menC;gene_biotype=protein_coding;locus_tag=C9F05_RS21305;old_locus_tag=C9F05_21895
NZ_PYKE01000312.1	Protein Homology	CDS	9161	10123	.	-	0	ID=cds-WP_001255560.1;Parent=gene-C9F05_RS21305;Dbxref=GenBank:WP_001255560.1;Name=WP_001255560.1;Ontology_term=GO:0009234,GO:0000287,GO:0016836;gbkey=CDS;gene=menC;go_function=magnesium ion binding|0000287||IEA,hydro-lyase activity|0016836||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461248.1;locus_tag=C9F05_RS21305;product=o-succinylbenzoate synthase;protein_id=WP_001255560.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	10123	10980	.	-	.	ID=gene-C9F05_RS21310;Name=menB;gbkey=Gene;gene=menB;gene_biotype=protein_coding;locus_tag=C9F05_RS21310;old_locus_tag=C9F05_21900
NZ_PYKE01000312.1	Protein Homology	CDS	10123	10980	.	-	0	ID=cds-WP_000640013.1;Parent=gene-C9F05_RS21310;Dbxref=GenBank:WP_000640013.1;Name=WP_000640013.1;Ontology_term=GO:0009234,GO:0008935;gbkey=CDS;gene=menB;go_function=1%2C4-dihydroxy-2-naphthoyl-CoA synthase activity|0008935||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001641973.1;locus_tag=C9F05_RS21310;product=1%2C4-dihydroxy-2-naphthoyl-CoA synthase;protein_id=WP_000640013.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	10995	11753	.	-	.	ID=gene-C9F05_RS21315;Name=menH;gbkey=Gene;gene=menH;gene_biotype=protein_coding;locus_tag=C9F05_RS21315;old_locus_tag=C9F05_21905
NZ_PYKE01000312.1	Protein Homology	CDS	10995	11753	.	-	0	ID=cds-WP_024155126.1;Parent=gene-C9F05_RS21315;Dbxref=GenBank:WP_024155126.1;Name=WP_024155126.1;Ontology_term=GO:0009234,GO:0070205;gbkey=CDS;gene=menH;go_function=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase activity|0070205||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461250.1;locus_tag=C9F05_RS21315;product=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase;protein_id=WP_024155126.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	11750	13420	.	-	.	ID=gene-C9F05_RS21320;Name=menD;gbkey=Gene;gene=menD;gene_biotype=protein_coding;locus_tag=C9F05_RS21320;old_locus_tag=C9F05_21910
NZ_PYKE01000312.1	Protein Homology	CDS	11750	13420	.	-	0	ID=cds-WP_000116382.1;Parent=gene-C9F05_RS21320;Dbxref=GenBank:WP_000116382.1;Name=WP_000116382.1;Ontology_term=GO:0009234,GO:0030976,GO:0070204;gbkey=CDS;gene=menD;go_function=thiamine pyrophosphate binding|0030976||IEA,2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity|0070204||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461251.1;locus_tag=C9F05_RS21320;product=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase;protein_id=WP_000116382.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	13506	14801	.	-	.	ID=gene-C9F05_RS21325;Name=menF;gbkey=Gene;gene=menF;gene_biotype=protein_coding;locus_tag=C9F05_RS21325;old_locus_tag=C9F05_21915
NZ_PYKE01000312.1	Protein Homology	CDS	13506	14801	.	-	0	ID=cds-WP_135370623.1;Parent=gene-C9F05_RS21325;Dbxref=GenBank:WP_135370623.1;Name=WP_135370623.1;Ontology_term=GO:0008909;gbkey=CDS;gene=menF;go_function=isochorismate synthase activity|0008909||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461252.1;locus_tag=C9F05_RS21325;product=isochorismate synthase MenF;protein_id=WP_135370623.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	14902	15207	.	-	.	ID=gene-C9F05_RS21330;Name=elaB;gbkey=Gene;gene=elaB;gene_biotype=protein_coding;locus_tag=C9F05_RS21330;old_locus_tag=C9F05_21920
NZ_PYKE01000312.1	Protein Homology	CDS	14902	15207	.	-	0	ID=cds-WP_001522308.1;Parent=gene-C9F05_RS21330;Dbxref=GenBank:WP_001522308.1;Name=WP_001522308.1;gbkey=CDS;gene=elaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311181.1;locus_tag=C9F05_RS21330;product=stress response protein ElaB;protein_id=WP_001522308.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	15262	15723	.	-	.	ID=gene-C9F05_RS21335;Name=C9F05_RS21335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21335;old_locus_tag=C9F05_21925
NZ_PYKE01000312.1	Protein Homology	CDS	15262	15723	.	-	0	ID=cds-WP_000568155.1;Parent=gene-C9F05_RS21335;Dbxref=GenBank:WP_000568155.1;Name=WP_000568155.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461254.1;locus_tag=C9F05_RS21335;product=GNAT family N-acetyltransferase;protein_id=WP_000568155.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	15784	16701	.	+	.	ID=gene-C9F05_RS21340;Name=rbn;gbkey=Gene;gene=rbn;gene_biotype=protein_coding;locus_tag=C9F05_RS21340;old_locus_tag=C9F05_21930
NZ_PYKE01000312.1	Protein Homology	CDS	15784	16701	.	+	0	ID=cds-WP_135370624.1;Parent=gene-C9F05_RS21340;Dbxref=GenBank:WP_135370624.1;Name=WP_135370624.1;Ontology_term=GO:0042780,GO:0016891;gbkey=CDS;gene=rbn;go_function=RNA endonuclease activity producing 5'-phosphomonoesters%2C hydrolytic mechanism|0016891||IEA;go_process=tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461255.1;locus_tag=C9F05_RS21340;product=ribonuclease BN;protein_id=WP_135370624.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	16767	17768	.	+	.	ID=gene-C9F05_RS21345;Name=C9F05_RS21345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21345;old_locus_tag=C9F05_21935
NZ_PYKE01000312.1	Protein Homology	CDS	16767	17768	.	+	0	ID=cds-WP_000368558.1;Parent=gene-C9F05_RS21345;Dbxref=GenBank:WP_000368558.1;Name=WP_000368558.1;Ontology_term=GO:0000160,GO:0006935,GO:0000156;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,chemotaxis|0006935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461256.1;locus_tag=C9F05_RS21345;product=chemotaxis protein;protein_id=WP_000368558.1;transl_table=11
NZ_PYKE01000312.1	RefSeq	gene	17809	18049	.	-	.	ID=gene-C9F05_RS21350;Name=C9F05_RS21350;end_range=18049,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21350;old_locus_tag=C9F05_21940;partial=true
NZ_PYKE01000312.1	Protein Homology	CDS	17809	18049	.	-	1	ID=cds-WP_135370625.1;Parent=gene-C9F05_RS21350;Dbxref=GenBank:WP_135370625.1;Name=WP_135370625.1;end_range=18049,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461257.1;locus_tag=C9F05_RS21350;partial=true;product=YfbK domain-containing protein;protein_id=WP_135370625.1;transl_table=11
##sequence-region NZ_PYKE01000298.1 1 446
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000298.1	RefSeq	region	1	446	.	+	.	ID=NZ_PYKE01000298.1:1..446;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000298.1	RefSeq	pseudogene	1	446	.	-	.	ID=gene-C9F05_RS20440;Name=C9F05_RS20440;end_range=446,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS20440;old_locus_tag=C9F05_21005;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000298.1	Protein Homology	CDS	1	446	.	-	0	ID=cds-C9F05_RS20440;Parent=gene-C9F05_RS20440;Note=catalyzes the formation of pyruvate from oxaloacetate%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=446,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9F05_RS20440;partial=true;product=sodium-extruding oxaloacetate decarboxylase subunit alpha;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000157.1 1 17999
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000157.1	RefSeq	region	1	17999	.	+	.	ID=NZ_PYKE01000157.1:1..17999;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000157.1	RefSeq	gene	139	831	.	-	.	ID=gene-C9F05_RS11010;Name=C9F05_RS11010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11010;old_locus_tag=C9F05_11295
NZ_PYKE01000157.1	Protein Homology	CDS	139	831	.	-	0	ID=cds-WP_080194663.1;Parent=gene-C9F05_RS11010;Dbxref=GenBank:WP_080194663.1;Name=WP_080194663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000691472.1;locus_tag=C9F05_RS11010;product=hypothetical protein;protein_id=WP_080194663.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	1271	2116	.	+	.	ID=gene-C9F05_RS11015;Name=yidA;gbkey=Gene;gene=yidA;gene_biotype=protein_coding;locus_tag=C9F05_RS11015;old_locus_tag=C9F05_11300
NZ_PYKE01000157.1	Protein Homology	CDS	1271	2116	.	+	0	ID=cds-WP_000985570.1;Parent=gene-C9F05_RS11015;Dbxref=GenBank:WP_000985570.1;Name=WP_000985570.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yidA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462731.1;locus_tag=C9F05_RS11015;product=sugar-phosphatase;protein_id=WP_000985570.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	2377	3066	.	+	.	ID=gene-C9F05_RS11020;Name=dgoR;gbkey=Gene;gene=dgoR;gene_biotype=protein_coding;locus_tag=C9F05_RS11020;old_locus_tag=C9F05_11305
NZ_PYKE01000157.1	Protein Homology	CDS	2377	3066	.	+	0	ID=cds-WP_000174317.1;Parent=gene-C9F05_RS11020;Dbxref=GenBank:WP_000174317.1;Name=WP_000174317.1;gbkey=CDS;gene=dgoR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462730.1;locus_tag=C9F05_RS11020;product=D-galactonate utilization transcriptional regulator DgoR;protein_id=WP_000174317.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	3063	3941	.	+	.	ID=gene-C9F05_RS11025;Name=C9F05_RS11025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11025;old_locus_tag=C9F05_11310
NZ_PYKE01000157.1	Protein Homology	CDS	3063	3941	.	+	0	ID=cds-WP_000127129.1;Parent=gene-C9F05_RS11025;Dbxref=GenBank:WP_000127129.1;Name=WP_000127129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462729.1;locus_tag=C9F05_RS11025;product=2-dehydro-3-deoxygalactonokinase;protein_id=WP_000127129.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	3925	4542	.	+	.	ID=gene-C9F05_RS11030;Name=C9F05_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11030;old_locus_tag=C9F05_11315
NZ_PYKE01000157.1	Protein Homology	CDS	3925	4542	.	+	0	ID=cds-WP_001198741.1;Parent=gene-C9F05_RS11030;Dbxref=GenBank:WP_001198741.1;Name=WP_001198741.1;Ontology_term=GO:0034194,GO:0008674;gbkey=CDS;go_function=2-dehydro-3-deoxy-6-phosphogalactonate aldolase activity|0008674||IEA;go_process=D-galactonate catabolic process|0034194||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229569.1;locus_tag=C9F05_RS11030;product=2-dehydro-3-deoxy-6-phosphogalactonate aldolase;protein_id=WP_001198741.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	4539	5687	.	+	.	ID=gene-C9F05_RS11035;Name=dgoD;gbkey=Gene;gene=dgoD;gene_biotype=protein_coding;locus_tag=C9F05_RS11035;old_locus_tag=C9F05_11320
NZ_PYKE01000157.1	Protein Homology	CDS	4539	5687	.	+	0	ID=cds-WP_000704735.1;Parent=gene-C9F05_RS11035;Dbxref=GenBank:WP_000704735.1;Name=WP_000704735.1;Ontology_term=GO:0009063,GO:0008869;gbkey=CDS;gene=dgoD;go_function=galactonate dehydratase activity|0008869||IEA;go_process=amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020077623.1;locus_tag=C9F05_RS11035;product=galactonate dehydratase;protein_id=WP_000704735.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	5772	7109	.	+	.	ID=gene-C9F05_RS11040;Name=C9F05_RS11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11040;old_locus_tag=C9F05_11325
NZ_PYKE01000157.1	Protein Homology	CDS	5772	7109	.	+	0	ID=cds-WP_000253524.1;Parent=gene-C9F05_RS11040;Dbxref=GenBank:WP_000253524.1;Name=WP_000253524.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462727.1;locus_tag=C9F05_RS11040;product=MFS transporter;protein_id=WP_000253524.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	7135	9870	.	-	.	ID=gene-C9F05_RS11045;Name=torS;gbkey=Gene;gene=torS;gene_biotype=protein_coding;locus_tag=C9F05_RS11045;old_locus_tag=C9F05_11330
NZ_PYKE01000157.1	Protein Homology	CDS	7135	9870	.	-	0	ID=cds-WP_135370270.1;Parent=gene-C9F05_RS11045;Dbxref=GenBank:WP_135370270.1;Name=WP_135370270.1;gbkey=CDS;gene=torS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462726.1;locus_tag=C9F05_RS11045;product=TMAO reductase system sensor histidine kinase/response regulator TorS;protein_id=WP_135370270.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	9950	10990	.	+	.	ID=gene-C9F05_RS11050;Name=torT;gbkey=Gene;gene=torT;gene_biotype=protein_coding;locus_tag=C9F05_RS11050;old_locus_tag=C9F05_11335
NZ_PYKE01000157.1	Protein Homology	CDS	9950	10990	.	+	0	ID=cds-WP_135370271.1;Parent=gene-C9F05_RS11050;Dbxref=GenBank:WP_135370271.1;Name=WP_135370271.1;gbkey=CDS;gene=torT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462725.1;locus_tag=C9F05_RS11050;product=TMAO reductase system periplasmic protein TorT;protein_id=WP_135370271.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	10963	11655	.	-	.	ID=gene-C9F05_RS11055;Name=torR;gbkey=Gene;gene=torR;gene_biotype=protein_coding;locus_tag=C9F05_RS11055;old_locus_tag=C9F05_11340
NZ_PYKE01000157.1	Protein Homology	CDS	10963	11655	.	-	0	ID=cds-WP_001562512.1;Parent=gene-C9F05_RS11055;Dbxref=GenBank:WP_001562512.1;Name=WP_001562512.1;gbkey=CDS;gene=torR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462724.1;locus_tag=C9F05_RS11055;product=two-component system response regulator TorR;protein_id=WP_001562512.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	11785	12969	.	+	.	ID=gene-C9F05_RS11060;Name=torC;gbkey=Gene;gene=torC;gene_biotype=protein_coding;locus_tag=C9F05_RS11060;old_locus_tag=C9F05_11345
NZ_PYKE01000157.1	Protein Homology	CDS	11785	12969	.	+	0	ID=cds-WP_001230254.1;Parent=gene-C9F05_RS11060;Dbxref=GenBank:WP_001230254.1;Name=WP_001230254.1;Ontology_term=GO:0009055,GO:0020037,GO:0016020;gbkey=CDS;gene=torC;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462723.1;locus_tag=C9F05_RS11060;product=pentaheme c-type cytochrome TorC;protein_id=WP_001230254.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	12959	15511	.	+	.	ID=gene-C9F05_RS11065;Name=torA;gbkey=Gene;gene=torA;gene_biotype=protein_coding;locus_tag=C9F05_RS11065;old_locus_tag=C9F05_11350
NZ_PYKE01000157.1	Protein Homology	CDS	12959	15511	.	+	0	ID=cds-WP_135370272.1;Parent=gene-C9F05_RS11065;Dbxref=GenBank:WP_135370272.1;Name=WP_135370272.1;Ontology_term=GO:0030151,GO:0043546,GO:0050626,GO:0042597;gbkey=CDS;gene=torA;go_component=periplasmic space|0042597||IEA;go_function=molybdenum ion binding|0030151||IEA,molybdopterin cofactor binding|0043546||IEA,trimethylamine-N-oxide reductase (cytochrome c) activity|0050626||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462722.1;locus_tag=C9F05_RS11065;product=trimethylamine-N-oxide reductase TorA;protein_id=WP_135370272.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	15504	16136	.	+	.	ID=gene-C9F05_RS11070;Name=torD;gbkey=Gene;gene=torD;gene_biotype=protein_coding;locus_tag=C9F05_RS11070;old_locus_tag=C9F05_11355
NZ_PYKE01000157.1	Protein Homology	CDS	15504	16136	.	+	0	ID=cds-WP_001041512.1;Parent=gene-C9F05_RS11070;Dbxref=GenBank:WP_001041512.1;Name=WP_001041512.1;Ontology_term=GO:0051259;gbkey=CDS;gene=torD;go_process=protein complex oligomerization|0051259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462721.1;locus_tag=C9F05_RS11070;product=molecular chaperone TorD;protein_id=WP_001041512.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	16326	17726	.	+	.	ID=gene-C9F05_RS11075;Name=C9F05_RS11075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11075;old_locus_tag=C9F05_11360
NZ_PYKE01000157.1	Protein Homology	CDS	16326	17726	.	+	0	ID=cds-WP_000724469.1;Parent=gene-C9F05_RS11075;Dbxref=GenBank:WP_000724469.1;Name=WP_000724469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462720.1;locus_tag=C9F05_RS11075;product=cytochrome-c peroxidase;protein_id=WP_000724469.1;transl_table=11
NZ_PYKE01000157.1	RefSeq	gene	17732	17999	.	+	.	ID=gene-C9F05_RS11080;Name=C9F05_RS11080;end_range=17999,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11080;old_locus_tag=C9F05_11365;partial=true
NZ_PYKE01000157.1	Protein Homology	CDS	17732	17999	.	+	0	ID=cds-WP_135370273.1;Parent=gene-C9F05_RS11080;Dbxref=GenBank:WP_135370273.1;Name=WP_135370273.1;Ontology_term=GO:0005524;end_range=17999,.;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461197.1;locus_tag=C9F05_RS11080;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_135370273.1;transl_table=11
##sequence-region NZ_PYKE01000311.1 1 17306
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000311.1	RefSeq	region	1	17306	.	+	.	ID=NZ_PYKE01000311.1:1..17306;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000311.1	RefSeq	gene	128	859	.	-	.	ID=gene-C9F05_RS21185;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=C9F05_RS21185;old_locus_tag=C9F05_21775
NZ_PYKE01000311.1	Protein Homology	CDS	128	859	.	-	0	ID=cds-WP_001293274.1;Parent=gene-C9F05_RS21185;Dbxref=GenBank:WP_001293274.1;Name=WP_001293274.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463230.1;locus_tag=C9F05_RS21185;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_001293274.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	950	3388	.	-	.	ID=gene-C9F05_RS21190;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;locus_tag=C9F05_RS21190;old_locus_tag=C9F05_21780
NZ_PYKE01000311.1	Protein Homology	CDS	950	3388	.	-	0	ID=cds-WP_000076357.1;Parent=gene-C9F05_RS21190;Dbxref=GenBank:WP_000076357.1;Name=WP_000076357.1;Ontology_term=GO:0016070,GO:0004540;gbkey=CDS;gene=rnr;go_function=RNA nuclease activity|0004540||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463229.1;locus_tag=C9F05_RS21190;product=ribonuclease R;protein_id=WP_000076357.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	3426	3851	.	-	.	ID=gene-C9F05_RS21195;Name=nsrR;gbkey=Gene;gene=nsrR;gene_biotype=protein_coding;locus_tag=C9F05_RS21195;old_locus_tag=C9F05_21785
NZ_PYKE01000311.1	Protein Homology	CDS	3426	3851	.	-	0	ID=cds-WP_001177632.1;Parent=gene-C9F05_RS21195;Dbxref=GenBank:WP_001177632.1;Name=WP_001177632.1;gbkey=CDS;gene=nsrR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134424.1;locus_tag=C9F05_RS21195;product=nitric oxide-sensing transcriptional repressor NsrR;protein_id=WP_001177632.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	4059	5357	.	-	.	ID=gene-C9F05_RS21200;Name=purA;gbkey=Gene;gene=purA;gene_biotype=protein_coding;locus_tag=C9F05_RS21200;old_locus_tag=C9F05_21790
NZ_PYKE01000311.1	Protein Homology	CDS	4059	5357	.	-	0	ID=cds-WP_000527972.1;Parent=gene-C9F05_RS21200;Dbxref=GenBank:WP_000527972.1;Name=WP_000527972.1;Ontology_term=GO:0009152,GO:0004019;gbkey=CDS;gene=purA;go_function=adenylosuccinate synthase activity|0004019||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019842885.1;locus_tag=C9F05_RS21200;product=adenylosuccinate synthase;protein_id=WP_000527972.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	5460	5657	.	-	.	ID=gene-C9F05_RS21205;Name=C9F05_RS21205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21205;old_locus_tag=C9F05_21795
NZ_PYKE01000311.1	Protein Homology	CDS	5460	5657	.	-	0	ID=cds-WP_001089290.1;Parent=gene-C9F05_RS21205;Dbxref=GenBank:WP_001089290.1;Name=WP_001089290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463226.1;locus_tag=C9F05_RS21205;product=DUF2065 domain-containing protein;protein_id=WP_001089290.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	5736	6740	.	-	.	ID=gene-C9F05_RS21210;Name=hflC;gbkey=Gene;gene=hflC;gene_biotype=protein_coding;locus_tag=C9F05_RS21210;old_locus_tag=C9F05_21800
NZ_PYKE01000311.1	Protein Homology	CDS	5736	6740	.	-	0	ID=cds-WP_001232417.1;Parent=gene-C9F05_RS21210;Dbxref=GenBank:WP_001232417.1;Name=WP_001232417.1;gbkey=CDS;gene=hflC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463225.1;locus_tag=C9F05_RS21210;product=protease modulator HflC;protein_id=WP_001232417.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	6743	8002	.	-	.	ID=gene-C9F05_RS21215;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=C9F05_RS21215;old_locus_tag=C9F05_21805
NZ_PYKE01000311.1	Protein Homology	CDS	6743	8002	.	-	0	ID=cds-WP_000312505.1;Parent=gene-C9F05_RS21215;Dbxref=GenBank:WP_000312505.1;Name=WP_000312505.1;Ontology_term=GO:0016020;gbkey=CDS;gene=hflK;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463224.1;locus_tag=C9F05_RS21215;product=FtsH protease activity modulator HflK;protein_id=WP_000312505.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	8217	9497	.	-	.	ID=gene-C9F05_RS21220;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=C9F05_RS21220;old_locus_tag=C9F05_21810
NZ_PYKE01000311.1	Protein Homology	CDS	8217	9497	.	-	0	ID=cds-WP_000460338.1;Parent=gene-C9F05_RS21220;Dbxref=GenBank:WP_000460338.1;Name=WP_000460338.1;Ontology_term=GO:0005525;gbkey=CDS;gene=hflX;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463223.1;locus_tag=C9F05_RS21220;product=ribosome rescue GTPase HflX;protein_id=WP_000460338.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	9569	9877	.	-	.	ID=gene-C9F05_RS21225;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=C9F05_RS21225;old_locus_tag=C9F05_21815
NZ_PYKE01000311.1	Protein Homology	CDS	9569	9877	.	-	0	ID=cds-WP_001051875.1;Parent=gene-C9F05_RS21225;Dbxref=GenBank:WP_001051875.1;Name=WP_001051875.1;Ontology_term=GO:0006355,GO:0003723;gbkey=CDS;gene=hfq;go_function=RNA binding|0003723||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463222.1;locus_tag=C9F05_RS21225;product=RNA chaperone Hfq;protein_id=WP_001051875.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	9960	10910	.	-	.	ID=gene-C9F05_RS21230;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=C9F05_RS21230;old_locus_tag=C9F05_21820
NZ_PYKE01000311.1	Protein Homology	CDS	9960	10910	.	-	0	ID=cds-WP_001000734.1;Parent=gene-C9F05_RS21230;Dbxref=GenBank:WP_001000734.1;Name=WP_001000734.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463221.1;locus_tag=C9F05_RS21230;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_001000734.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	pseudogene	10903	12759	.	-	.	ID=gene-C9F05_RS21235;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=pseudogene;locus_tag=C9F05_RS21235;old_locus_tag=C9F05_21825;pseudo=true
NZ_PYKE01000311.1	Protein Homology	CDS	10903	12759	.	-	0	ID=cds-C9F05_RS21235;Parent=gene-C9F05_RS21235;Note=internal stop;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463220.1;locus_tag=C9F05_RS21235;product=DNA mismatch repair endonuclease MutL;pseudo=true;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	12769	14091	.	-	.	ID=gene-C9F05_RS21240;Name=amiB;gbkey=Gene;gene=amiB;gene_biotype=protein_coding;locus_tag=C9F05_RS21240;old_locus_tag=C9F05_21830
NZ_PYKE01000311.1	Protein Homology	CDS	12769	14091	.	-	0	ID=cds-WP_135370620.1;Parent=gene-C9F05_RS21240;Dbxref=GenBank:WP_135370620.1;Name=WP_135370620.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=amiB;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463219.1;locus_tag=C9F05_RS21240;product=N-acetylmuramoyl-L-alanine amidase AmiB;protein_id=WP_135370620.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	14108	14569	.	-	.	ID=gene-C9F05_RS21245;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=C9F05_RS21245;old_locus_tag=C9F05_21835
NZ_PYKE01000311.1	Protein Homology	CDS	14108	14569	.	-	0	ID=cds-WP_000981984.1;Parent=gene-C9F05_RS21245;Dbxref=GenBank:WP_000981984.1;Name=WP_000981984.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaE;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463218.1;locus_tag=C9F05_RS21245;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=WP_000981984.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	14541	16088	.	-	.	ID=gene-C9F05_RS21250;Name=nnr;gbkey=Gene;gene=nnr;gene_biotype=protein_coding;locus_tag=C9F05_RS21250;old_locus_tag=C9F05_21840
NZ_PYKE01000311.1	Protein Homology	CDS	14541	16088	.	-	0	ID=cds-WP_000968670.1;Parent=gene-C9F05_RS21250;Dbxref=GenBank:WP_000968670.1;Name=WP_000968670.1;Ontology_term=GO:0052855;gbkey=CDS;gene=nnr;go_function=ADP-dependent NAD(P)H-hydrate dehydratase activity|0052855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463217.1;locus_tag=C9F05_RS21250;product=bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase;protein_id=WP_000968670.1;transl_table=11
NZ_PYKE01000311.1	RefSeq	gene	16087	17226	.	+	.	ID=gene-C9F05_RS21255;Name=queG;gbkey=Gene;gene=queG;gene_biotype=protein_coding;locus_tag=C9F05_RS21255;old_locus_tag=C9F05_21845
NZ_PYKE01000311.1	Protein Homology	CDS	16087	17226	.	+	0	ID=cds-WP_001615111.1;Parent=gene-C9F05_RS21255;Dbxref=GenBank:WP_001615111.1;Name=WP_001615111.1;Ontology_term=GO:0008033,GO:0008616,GO:0051539,GO:0052693;gbkey=CDS;gene=queG;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=tRNA processing|0008033||IEA,tRNA queuosine(34) biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418587.1;locus_tag=C9F05_RS21255;product=tRNA epoxyqueuosine(34) reductase QueG;protein_id=WP_001615111.1;transl_table=11
##sequence-region NZ_PYKE01000004.1 1 59205
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000004.1	RefSeq	region	1	59205	.	+	.	ID=NZ_PYKE01000004.1:1..59205;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000004.1	RefSeq	gene	173	1093	.	+	.	ID=gene-C9F05_RS00025;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=protein_coding;locus_tag=C9F05_RS00025;old_locus_tag=C9F05_00025
NZ_PYKE01000004.1	Protein Homology	CDS	173	1093	.	+	0	ID=cds-WP_023993455.1;Parent=gene-C9F05_RS00025;Dbxref=GenBank:WP_023993455.1;Name=WP_023993455.1;Ontology_term=GO:0006014,GO:0004747;gbkey=CDS;gene=rbsK;go_function=ribokinase activity|0004747||IEA;go_process=D-ribose metabolic process|0006014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462692.1;locus_tag=C9F05_RS00025;product=ribokinase;protein_id=WP_023993455.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	1124	2440	.	+	.	ID=gene-C9F05_RS00030;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=C9F05_RS00030;old_locus_tag=C9F05_00030
NZ_PYKE01000004.1	Protein Homology	CDS	1124	2440	.	+	0	ID=cds-WP_000998359.1;Parent=gene-C9F05_RS00030;Dbxref=GenBank:WP_000998359.1;Name=WP_000998359.1;Ontology_term=GO:0015756,GO:0015150,GO:0015535;gbkey=CDS;gene=fucP;go_function=fucose transmembrane transporter activity|0015150||IEA,fucose:proton symporter activity|0015535||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462691.1;locus_tag=C9F05_RS00030;product=L-fucose:H+ symporter permease;protein_id=WP_000998359.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	2452	3465	.	+	.	ID=gene-C9F05_RS00035;Name=C9F05_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00035;old_locus_tag=C9F05_00035
NZ_PYKE01000004.1	Protein Homology	CDS	2452	3465	.	+	0	ID=cds-WP_135369900.1;Parent=gene-C9F05_RS00035;Dbxref=GenBank:WP_135369900.1;Name=WP_135369900.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462690.1;locus_tag=C9F05_RS00035;product=aldose 1-epimerase family protein;protein_id=WP_135369900.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	3540	4130	.	+	.	ID=gene-C9F05_RS00040;Name=uhpA;gbkey=Gene;gene=uhpA;gene_biotype=protein_coding;locus_tag=C9F05_RS00040;old_locus_tag=C9F05_00040
NZ_PYKE01000004.1	Protein Homology	CDS	3540	4130	.	+	0	ID=cds-WP_000633672.1;Parent=gene-C9F05_RS00040;Dbxref=GenBank:WP_000633672.1;Name=WP_000633672.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=uhpA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462689.1;locus_tag=C9F05_RS00040;product=transcriptional regulator UhpA;protein_id=WP_000633672.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	4130	5632	.	+	.	ID=gene-C9F05_RS00045;Name=uhpB;gbkey=Gene;gene=uhpB;gene_biotype=protein_coding;locus_tag=C9F05_RS00045;old_locus_tag=C9F05_00045
NZ_PYKE01000004.1	Protein Homology	CDS	4130	5632	.	+	0	ID=cds-WP_135369901.1;Parent=gene-C9F05_RS00045;Dbxref=GenBank:WP_135369901.1;Name=WP_135369901.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=uhpB;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462688.1;locus_tag=C9F05_RS00045;product=signal transduction histidine-protein kinase/phosphatase UhpB;protein_id=WP_135369901.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	5642	6970	.	+	.	ID=gene-C9F05_RS00050;Name=C9F05_RS00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00050;old_locus_tag=C9F05_00050
NZ_PYKE01000004.1	Protein Homology	CDS	5642	6970	.	+	0	ID=cds-WP_000948164.1;Parent=gene-C9F05_RS00050;Dbxref=GenBank:WP_000948164.1;Name=WP_000948164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462687.1;locus_tag=C9F05_RS00050;product=MFS transporter;protein_id=WP_000948164.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	7113	8504	.	+	.	ID=gene-C9F05_RS00055;Name=uhpT;gbkey=Gene;gene=uhpT;gene_biotype=protein_coding;locus_tag=C9F05_RS00055;old_locus_tag=C9F05_00055
NZ_PYKE01000004.1	Protein Homology	CDS	7113	8504	.	+	0	ID=cds-WP_000879181.1;Parent=gene-C9F05_RS00055;Dbxref=GenBank:WP_000879181.1;Name=WP_000879181.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=uhpT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462686.1;locus_tag=C9F05_RS00055;product=hexose-6-phosphate:phosphate antiporter;protein_id=WP_000879181.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	8697	9149	.	+	.	ID=gene-C9F05_RS00060;Name=C9F05_RS00060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00060;old_locus_tag=C9F05_00060
NZ_PYKE01000004.1	Protein Homology	CDS	8697	9149	.	+	0	ID=cds-WP_001519640.1;Parent=gene-C9F05_RS00060;Dbxref=GenBank:WP_001519640.1;Name=WP_001519640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462685.1;locus_tag=C9F05_RS00060;product=DUF1198 domain-containing protein;protein_id=WP_001519640.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	9502	10245	.	+	.	ID=gene-C9F05_RS00065;Name=C9F05_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00065;old_locus_tag=C9F05_00065
NZ_PYKE01000004.1	Protein Homology	CDS	9502	10245	.	+	0	ID=cds-WP_000854956.1;Parent=gene-C9F05_RS00065;Dbxref=GenBank:WP_000854956.1;Name=WP_000854956.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462684.1;locus_tag=C9F05_RS00065;product=GntR family transcriptional regulator;protein_id=WP_000854956.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	10263	10736	.	+	.	ID=gene-C9F05_RS00070;Name=C9F05_RS00070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00070;old_locus_tag=C9F05_00070
NZ_PYKE01000004.1	Protein Homology	CDS	10263	10736	.	+	0	ID=cds-WP_001152237.1;Parent=gene-C9F05_RS00070;Dbxref=GenBank:WP_001152237.1;Name=WP_001152237.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462683.1;locus_tag=C9F05_RS00070;product=PTS sugar transporter subunit IIA;protein_id=WP_001152237.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	10733	11020	.	+	.	ID=gene-C9F05_RS00075;Name=C9F05_RS00075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00075;old_locus_tag=C9F05_00075
NZ_PYKE01000004.1	Protein Homology	CDS	10733	11020	.	+	0	ID=cds-WP_000041396.1;Parent=gene-C9F05_RS00075;Dbxref=GenBank:WP_000041396.1;Name=WP_000041396.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462682.1;locus_tag=C9F05_RS00075;product=PTS sugar transporter subunit IIB;protein_id=WP_000041396.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	11096	12454	.	+	.	ID=gene-C9F05_RS00080;Name=C9F05_RS00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00080;old_locus_tag=C9F05_00080
NZ_PYKE01000004.1	Protein Homology	CDS	11096	12454	.	+	0	ID=cds-WP_000997825.1;Parent=gene-C9F05_RS00080;Dbxref=GenBank:WP_000997825.1;Name=WP_000997825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462681.1;locus_tag=C9F05_RS00080;product=PTS galactitol transporter subunit IIC;protein_id=WP_000997825.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	12447	13931	.	+	.	ID=gene-C9F05_RS00085;Name=C9F05_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00085;old_locus_tag=C9F05_00085
NZ_PYKE01000004.1	Protein Homology	CDS	12447	13931	.	+	0	ID=cds-WP_135369902.1;Parent=gene-C9F05_RS00085;Dbxref=GenBank:WP_135369902.1;Name=WP_135369902.1;Ontology_term=GO:0005975,GO:0016310,GO:0005524,GO:0019200;gbkey=CDS;go_function=ATP binding|0005524||IEA,carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462680.1;locus_tag=C9F05_RS00085;product=FGGY-family carbohydrate kinase;protein_id=WP_135369902.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	13994	14854	.	+	.	ID=gene-C9F05_RS00090;Name=C9F05_RS00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00090;old_locus_tag=C9F05_00090
NZ_PYKE01000004.1	Protein Homology	CDS	13994	14854	.	+	0	ID=cds-WP_001131797.1;Parent=gene-C9F05_RS00090;Dbxref=GenBank:WP_001131797.1;Name=WP_001131797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462679.1;locus_tag=C9F05_RS00090;product=class II aldolase;protein_id=WP_001131797.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	14864	15133	.	+	.	ID=gene-C9F05_RS00095;Name=C9F05_RS00095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00095;old_locus_tag=C9F05_00095
NZ_PYKE01000004.1	Protein Homology	CDS	14864	15133	.	+	0	ID=cds-WP_000621109.1;Parent=gene-C9F05_RS00095;Dbxref=GenBank:WP_000621109.1;Name=WP_000621109.1;Ontology_term=GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462678.1;locus_tag=C9F05_RS00095;product=HPr family phosphocarrier protein;protein_id=WP_000621109.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	15224	15547	.	-	.	ID=gene-C9F05_RS00100;Name=C9F05_RS00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00100;old_locus_tag=C9F05_00100
NZ_PYKE01000004.1	Protein Homology	CDS	15224	15547	.	-	0	ID=cds-WP_135369903.1;Parent=gene-C9F05_RS00100;Dbxref=GenBank:WP_135369903.1;Name=WP_135369903.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462677.1;locus_tag=C9F05_RS00100;product=helix-turn-helix domain-containing protein;protein_id=WP_135369903.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	15531	15890	.	-	.	ID=gene-C9F05_RS00105;Name=C9F05_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00105;old_locus_tag=C9F05_00105
NZ_PYKE01000004.1	Protein Homology	CDS	15531	15890	.	-	0	ID=cds-WP_001217951.1;Parent=gene-C9F05_RS00105;Dbxref=GenBank:WP_001217951.1;Name=WP_001217951.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462676.1;locus_tag=C9F05_RS00105;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_001217951.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	16106	17299	.	+	.	ID=gene-C9F05_RS00110;Name=nepI;gbkey=Gene;gene=nepI;gene_biotype=protein_coding;locus_tag=C9F05_RS00110;old_locus_tag=C9F05_00110
NZ_PYKE01000004.1	Protein Homology	CDS	16106	17299	.	+	0	ID=cds-WP_001004798.1;Parent=gene-C9F05_RS00110;Dbxref=GenBank:WP_001004798.1;Name=WP_001004798.1;Ontology_term=GO:0015860,GO:0015211,GO:0016020;gbkey=CDS;gene=nepI;go_component=membrane|0016020||IEA;go_function=purine nucleoside transmembrane transporter activity|0015211||IEA;go_process=purine nucleoside transmembrane transport|0015860||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462675.1;locus_tag=C9F05_RS00110;product=purine ribonucleoside efflux pump NepI;protein_id=WP_001004798.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	17359	18741	.	-	.	ID=gene-C9F05_RS00115;Name=C9F05_RS00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00115;old_locus_tag=C9F05_00115
NZ_PYKE01000004.1	Protein Homology	CDS	17359	18741	.	-	0	ID=cds-WP_001270479.1;Parent=gene-C9F05_RS00115;Dbxref=GenBank:WP_001270479.1;Name=WP_001270479.1;Ontology_term=GO:0005975,GO:0016798;gbkey=CDS;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462674.1;locus_tag=C9F05_RS00115;product=glycoside hydrolase family 1 protein;protein_id=WP_001270479.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	18847	19140	.	-	.	ID=gene-C9F05_RS00120;Name=C9F05_RS00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00120;old_locus_tag=C9F05_00120
NZ_PYKE01000004.1	Protein Homology	CDS	18847	19140	.	-	0	ID=cds-WP_000824212.1;Parent=gene-C9F05_RS00120;Dbxref=GenBank:WP_000824212.1;Name=WP_000824212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462673.1;locus_tag=C9F05_RS00120;product=YicS family protein;protein_id=WP_000824212.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	pseudogene	19337	21717	.	+	.	ID=gene-C9F05_RS00125;Name=C9F05_RS00125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS00125;old_locus_tag=C9F05_00125;pseudo=true
NZ_PYKE01000004.1	Protein Homology	CDS	19337	21717	.	+	0	ID=cds-C9F05_RS00125;Parent=gene-C9F05_RS00125;Note=frameshifted;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462672.1;locus_tag=C9F05_RS00125;product=sigma 54-interacting transcriptional regulator;pseudo=true;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	21936	22361	.	+	.	ID=gene-C9F05_RS00135;Name=C9F05_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00135;old_locus_tag=C9F05_00130
NZ_PYKE01000004.1	Protein Homology	CDS	21936	22361	.	+	0	ID=cds-WP_000214106.1;Parent=gene-C9F05_RS00135;Dbxref=GenBank:WP_000214106.1;Name=WP_000214106.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462671.1;locus_tag=C9F05_RS00135;product=PTS sugar transporter subunit IIA;protein_id=WP_000214106.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	22372	22857	.	+	.	ID=gene-C9F05_RS00140;Name=C9F05_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00140;old_locus_tag=C9F05_00135
NZ_PYKE01000004.1	Protein Homology	CDS	22372	22857	.	+	0	ID=cds-WP_001284295.1;Parent=gene-C9F05_RS00140;Dbxref=GenBank:WP_001284295.1;Name=WP_001284295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462670.1;locus_tag=C9F05_RS00140;product=PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB;protein_id=WP_001284295.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	23003	23752	.	+	.	ID=gene-C9F05_RS00145;Name=C9F05_RS00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00145;old_locus_tag=C9F05_00140
NZ_PYKE01000004.1	Protein Homology	CDS	23003	23752	.	+	0	ID=cds-WP_000380259.1;Parent=gene-C9F05_RS00145;Dbxref=GenBank:WP_000380259.1;Name=WP_000380259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462669.1;locus_tag=C9F05_RS00145;product=PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC;protein_id=WP_000380259.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	23749	24609	.	+	.	ID=gene-C9F05_RS00150;Name=C9F05_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00150;old_locus_tag=C9F05_00145
NZ_PYKE01000004.1	Protein Homology	CDS	23749	24609	.	+	0	ID=cds-WP_167851646.1;Parent=gene-C9F05_RS00150;Dbxref=GenBank:WP_167851646.1;Name=WP_167851646.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462668.3;locus_tag=C9F05_RS00150;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_167851646.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	24613	25722	.	+	.	ID=gene-C9F05_RS00155;Name=dgaE;gbkey=Gene;gene=dgaE;gene_biotype=protein_coding;locus_tag=C9F05_RS00155;old_locus_tag=C9F05_00150
NZ_PYKE01000004.1	Protein Homology	CDS	24613	25722	.	+	0	ID=cds-WP_000188473.1;Parent=gene-C9F05_RS00155;Dbxref=GenBank:WP_000188473.1;Name=WP_000188473.1;Ontology_term=GO:0016829;gbkey=CDS;gene=dgaE;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462667.1;locus_tag=C9F05_RS00155;product=D-glucosaminate-6-phosphate ammonia lyase;protein_id=WP_000188473.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	25709	26452	.	+	.	ID=gene-C9F05_RS00160;Name=dagF;gbkey=Gene;gene=dagF;gene_biotype=protein_coding;locus_tag=C9F05_RS00160;old_locus_tag=C9F05_00155
NZ_PYKE01000004.1	Protein Homology	CDS	25709	26452	.	+	0	ID=cds-WP_001186140.1;Parent=gene-C9F05_RS00160;Dbxref=GenBank:WP_001186140.1;Name=WP_001186140.1;Ontology_term=GO:0008675;gbkey=CDS;gene=dagF;go_function=2-dehydro-3-deoxy-phosphogluconate aldolase activity|0008675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462666.1;locus_tag=C9F05_RS00160;product=2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_001186140.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	26688	27629	.	+	.	ID=gene-C9F05_RS00165;Name=C9F05_RS00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00165;old_locus_tag=C9F05_00160
NZ_PYKE01000004.1	Protein Homology	CDS	26688	27629	.	+	0	ID=cds-WP_000749540.1;Parent=gene-C9F05_RS00165;Dbxref=GenBank:WP_000749540.1;Name=WP_000749540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462665.1;locus_tag=C9F05_RS00165;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_000749540.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	27672	28574	.	-	.	ID=gene-C9F05_RS00170;Name=C9F05_RS00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00170;old_locus_tag=C9F05_00165
NZ_PYKE01000004.1	Protein Homology	CDS	27672	28574	.	-	0	ID=cds-WP_000535970.1;Parent=gene-C9F05_RS00170;Dbxref=GenBank:WP_000535970.1;Name=WP_000535970.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462664.1;locus_tag=C9F05_RS00170;product=EamA family transporter;protein_id=WP_000535970.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	29081	29776	.	+	.	ID=gene-C9F05_RS00175;Name=C9F05_RS00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00175;old_locus_tag=C9F05_00170
NZ_PYKE01000004.1	Protein Homology	CDS	29081	29776	.	+	0	ID=cds-WP_000392694.1;Parent=gene-C9F05_RS00175;Dbxref=GenBank:WP_000392694.1;Name=WP_000392694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462663.1;locus_tag=C9F05_RS00175;product=MgtC family protein;protein_id=WP_000392694.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	29996	32722	.	+	.	ID=gene-C9F05_RS00180;Name=mgtA;gbkey=Gene;gene=mgtA;gene_biotype=protein_coding;locus_tag=C9F05_RS00180;old_locus_tag=C9F05_00175
NZ_PYKE01000004.1	Protein Homology	CDS	29996	32722	.	+	0	ID=cds-WP_135369904.1;Parent=gene-C9F05_RS00180;Dbxref=GenBank:WP_135369904.1;Name=WP_135369904.1;Ontology_term=GO:0015693,GO:0015444,GO:0016020;gbkey=CDS;gene=mgtA;go_component=membrane|0016020||IEA;go_function=P-type magnesium transporter activity|0015444||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462662.1;locus_tag=C9F05_RS00180;product=magnesium-translocating P-type ATPase;protein_id=WP_135369904.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	32744	32836	.	+	.	ID=gene-C9F05_RS00185;Name=mgtR;gbkey=Gene;gene=mgtR;gene_biotype=protein_coding;locus_tag=C9F05_RS00185;old_locus_tag=C9F05_00180
NZ_PYKE01000004.1	Protein Homology	CDS	32744	32836	.	+	0	ID=cds-WP_001082117.1;Parent=gene-C9F05_RS00185;Dbxref=GenBank:WP_001082117.1;Name=WP_001082117.1;gbkey=CDS;gene=mgtR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001082117.1;locus_tag=C9F05_RS00185;product=protein MgtR;protein_id=WP_001082117.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	32849	32935	.	+	.	ID=gene-C9F05_RS23715;Name=mgtU;gbkey=Gene;gene=mgtU;gene_biotype=protein_coding;locus_tag=C9F05_RS23715
NZ_PYKE01000004.1	Protein Homology	CDS	32849	32935	.	+	0	ID=cds-WP_252515021.1;Parent=gene-C9F05_RS23715;Dbxref=GenBank:WP_252515021.1;Name=WP_252515021.1;gbkey=CDS;gene=mgtU;inference=COORDINATES: similar to AA sequence:RefSeq:WP_251009859.1;locus_tag=C9F05_RS23715;product=magnesium transporter protection protein MgtU;protein_id=WP_252515021.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	33037	33516	.	+	.	ID=gene-C9F05_RS00190;Name=cigR;gbkey=Gene;gene=cigR;gene_biotype=protein_coding;locus_tag=C9F05_RS00190;old_locus_tag=C9F05_00185
NZ_PYKE01000004.1	Protein Homology	CDS	33037	33516	.	+	0	ID=cds-WP_001065327.1;Parent=gene-C9F05_RS00190;Dbxref=GenBank:WP_001065327.1;Name=WP_001065327.1;gbkey=CDS;gene=cigR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462661.1;locus_tag=C9F05_RS00190;product=anti-virulence regulatory inner membrane protein CigR;protein_id=WP_001065327.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	33745	34425	.	-	.	ID=gene-C9F05_RS00195;Name=C9F05_RS00195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00195;old_locus_tag=C9F05_00195
NZ_PYKE01000004.1	Protein Homology	CDS	33745	34425	.	-	0	ID=cds-WP_000106464.1;Parent=gene-C9F05_RS00195;Dbxref=GenBank:WP_000106464.1;Name=WP_000106464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462660.1;locus_tag=C9F05_RS00195;product=isochorismatase family protein;protein_id=WP_000106464.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	35209	36066	.	+	.	ID=gene-C9F05_RS00205;Name=C9F05_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00205;old_locus_tag=C9F05_00205
NZ_PYKE01000004.1	Protein Homology	CDS	35209	36066	.	+	0	ID=cds-WP_135369910.1;Parent=gene-C9F05_RS00205;Dbxref=GenBank:WP_135369910.1;Name=WP_135369910.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462658.4;locus_tag=C9F05_RS00205;product=winged helix-turn-helix domain-containing protein;protein_id=WP_135369910.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	36077	36541	.	+	.	ID=gene-C9F05_RS00210;Name=C9F05_RS00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00210;old_locus_tag=C9F05_00210
NZ_PYKE01000004.1	Protein Homology	CDS	36077	36541	.	+	0	ID=cds-WP_023213975.1;Parent=gene-C9F05_RS00210;Dbxref=GenBank:WP_023213975.1;Name=WP_023213975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462657.1;locus_tag=C9F05_RS00210;product=hypothetical protein;protein_id=WP_023213975.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	36636	39503	.	-	.	ID=gene-C9F05_RS00215;Name=misL;gbkey=Gene;gene=misL;gene_biotype=protein_coding;locus_tag=C9F05_RS00215;old_locus_tag=C9F05_00215
NZ_PYKE01000004.1	Protein Homology	CDS	36636	39503	.	-	0	ID=cds-WP_135369905.1;Parent=gene-C9F05_RS00215;Dbxref=GenBank:WP_135369905.1;Name=WP_135369905.1;gbkey=CDS;gene=misL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462656.1;locus_tag=C9F05_RS00215;product=intestinal colonization autotransporter adhesin MisL;protein_id=WP_135369905.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	39578	40195	.	-	.	ID=gene-C9F05_RS00220;Name=C9F05_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00220;old_locus_tag=C9F05_00220
NZ_PYKE01000004.1	Protein Homology	CDS	39578	40195	.	-	0	ID=cds-WP_000984812.1;Parent=gene-C9F05_RS00220;Dbxref=GenBank:WP_000984812.1;Name=WP_000984812.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462655.1;locus_tag=C9F05_RS00220;product=helix-turn-helix transcriptional regulator;protein_id=WP_000984812.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	pseudogene	41443	41782	.	+	.	ID=gene-C9F05_RS00225;Name=C9F05_RS00225;end_range=41782,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS00225;old_locus_tag=C9F05_00225;partial=true;pseudo=true
NZ_PYKE01000004.1	Protein Homology	CDS	41443	41782	.	+	0	ID=cds-C9F05_RS00225;Parent=gene-C9F05_RS00225;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=41782,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611920.1;locus_tag=C9F05_RS00225;partial=true;product=transposase;pseudo=true;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	41818	41912	.	-	.	ID=gene-C9F05_RS00230;Name=C9F05_RS00230;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS00230;old_locus_tag=C9F05_00230
NZ_PYKE01000004.1	tRNAscan-SE	tRNA	41818	41912	.	-	.	ID=rna-C9F05_RS00230;Parent=gene-C9F05_RS00230;anticodon=(pos:complement(41876..41878));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS00230;product=tRNA-Sec
NZ_PYKE01000004.1	tRNAscan-SE	exon	41818	41912	.	-	.	ID=exon-C9F05_RS00230-1;Parent=rna-C9F05_RS00230;anticodon=(pos:complement(41876..41878));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS00230;product=tRNA-Sec
NZ_PYKE01000004.1	RefSeq	gene	42200	43582	.	+	.	ID=gene-C9F05_RS00235;Name=C9F05_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00235;old_locus_tag=C9F05_00235
NZ_PYKE01000004.1	Protein Homology	CDS	42200	43582	.	+	0	ID=cds-WP_000834259.1;Parent=gene-C9F05_RS00235;Dbxref=GenBank:WP_000834259.1;Name=WP_000834259.1;Ontology_term=GO:0006814,GO:0008643,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462650.1;locus_tag=C9F05_RS00235;product=glycoside-pentoside-hexuronide family transporter;protein_id=WP_000834259.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	43594	45912	.	+	.	ID=gene-C9F05_RS00240;Name=yicI;gbkey=Gene;gene=yicI;gene_biotype=protein_coding;locus_tag=C9F05_RS00240;old_locus_tag=C9F05_00240
NZ_PYKE01000004.1	Protein Homology	CDS	43594	45912	.	+	0	ID=cds-WP_135369906.1;Parent=gene-C9F05_RS00240;Dbxref=GenBank:WP_135369906.1;Name=WP_135369906.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=yicI;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462649.1;locus_tag=C9F05_RS00240;product=alpha-xylosidase;protein_id=WP_135369906.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	46015	47724	.	-	.	ID=gene-C9F05_RS00245;Name=C9F05_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00245;old_locus_tag=C9F05_00245
NZ_PYKE01000004.1	Protein Homology	CDS	46015	47724	.	-	0	ID=cds-WP_000766665.1;Parent=gene-C9F05_RS00245;Dbxref=GenBank:WP_000766665.1;Name=WP_000766665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462648.1;locus_tag=C9F05_RS00245;product=AsmA family protein;protein_id=WP_000766665.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	47845	49236	.	-	.	ID=gene-C9F05_RS00250;Name=xanP;gbkey=Gene;gene=xanP;gene_biotype=protein_coding;locus_tag=C9F05_RS00250;old_locus_tag=C9F05_00250
NZ_PYKE01000004.1	Protein Homology	CDS	47845	49236	.	-	0	ID=cds-WP_000115428.1;Parent=gene-C9F05_RS00250;Dbxref=GenBank:WP_000115428.1;Name=WP_000115428.1;gbkey=CDS;gene=xanP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462647.1;locus_tag=C9F05_RS00250;product=xanthine/proton symporter XanP;protein_id=WP_000115428.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	49464	50669	.	+	.	ID=gene-C9F05_RS00255;Name=gltS;gbkey=Gene;gene=gltS;gene_biotype=protein_coding;locus_tag=C9F05_RS00255;old_locus_tag=C9F05_00255
NZ_PYKE01000004.1	Protein Homology	CDS	49464	50669	.	+	0	ID=cds-WP_135369907.1;Parent=gene-C9F05_RS00255;Dbxref=GenBank:WP_135369907.1;Name=WP_135369907.1;Ontology_term=GO:0015813,GO:0015501,GO:0016020;gbkey=CDS;gene=gltS;go_component=membrane|0016020||IEA;go_function=glutamate:sodium symporter activity|0015501||IEA;go_process=L-glutamate transmembrane transport|0015813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016507315.1;locus_tag=C9F05_RS00255;product=sodium/glutamate symporter;protein_id=WP_135369907.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	50705	52786	.	-	.	ID=gene-C9F05_RS00260;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=C9F05_RS00260;old_locus_tag=C9F05_00260
NZ_PYKE01000004.1	Protein Homology	CDS	50705	52786	.	-	0	ID=cds-WP_000016748.1;Parent=gene-C9F05_RS00260;Dbxref=GenBank:WP_000016748.1;Name=WP_000016748.1;Ontology_term=GO:0006281,GO:0006310,GO:0003676,GO:0003678,GO:0005524;gbkey=CDS;gene=recG;go_function=nucleic acid binding|0003676||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462644.1;locus_tag=C9F05_RS00260;product=ATP-dependent DNA helicase RecG;protein_id=WP_000016748.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	52792	53481	.	-	.	ID=gene-C9F05_RS00265;Name=trmH;gbkey=Gene;gene=trmH;gene_biotype=protein_coding;locus_tag=C9F05_RS00265;old_locus_tag=C9F05_00265
NZ_PYKE01000004.1	Protein Homology	CDS	52792	53481	.	-	0	ID=cds-WP_001068436.1;Parent=gene-C9F05_RS00265;Dbxref=GenBank:WP_001068436.1;Name=WP_001068436.1;Ontology_term=GO:0030488,GO:0141100;gbkey=CDS;gene=trmH;go_function=tRNA (guanine(18)-2'-O)-methyltransferase activity|0141100||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462643.1;locus_tag=C9F05_RS00265;product=tRNA (guanosine(18)-2'-O)-methyltransferase TrmH;protein_id=WP_001068436.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	53486	55597	.	-	.	ID=gene-C9F05_RS00270;Name=spoT;gbkey=Gene;gene=spoT;gene_biotype=protein_coding;locus_tag=C9F05_RS00270;old_locus_tag=C9F05_00270
NZ_PYKE01000004.1	Protein Homology	CDS	53486	55597	.	-	0	ID=cds-WP_000280481.1;Parent=gene-C9F05_RS00270;Dbxref=GenBank:WP_000280481.1;Name=WP_000280481.1;Ontology_term=GO:0015969,GO:0008728,GO:0008893;gbkey=CDS;gene=spoT;go_function=GTP diphosphokinase activity|0008728||IEA,guanosine-3'%2C5'-bis(diphosphate) 3'-diphosphatase activity|0008893||IEA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462642.1;locus_tag=C9F05_RS00270;product=bifunctional GTP diphosphokinase/guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase;protein_id=WP_000280481.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	55616	55891	.	-	.	ID=gene-C9F05_RS00275;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=C9F05_RS00275;old_locus_tag=C9F05_00275
NZ_PYKE01000004.1	Protein Homology	CDS	55616	55891	.	-	0	ID=cds-WP_000135058.1;Parent=gene-C9F05_RS00275;Dbxref=GenBank:WP_000135058.1;Name=WP_000135058.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;gene=rpoZ;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013511051.1;locus_tag=C9F05_RS00275;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_000135058.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	55946	56569	.	-	.	ID=gene-C9F05_RS00280;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=C9F05_RS00280;old_locus_tag=C9F05_00280
NZ_PYKE01000004.1	Protein Homology	CDS	55946	56569	.	-	0	ID=cds-WP_000046966.1;Parent=gene-C9F05_RS00280;Dbxref=GenBank:WP_000046966.1;Name=WP_000046966.1;Ontology_term=GO:0006163,GO:0004385;gbkey=CDS;gene=gmk;go_function=GMP kinase activity|0004385||IEA;go_process=purine nucleotide metabolic process|0006163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000046969.1;locus_tag=C9F05_RS00280;product=guanylate kinase;protein_id=WP_000046966.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	56826	58511	.	+	.	ID=gene-C9F05_RS00285;Name=ligB;gbkey=Gene;gene=ligB;gene_biotype=protein_coding;locus_tag=C9F05_RS00285;old_locus_tag=C9F05_00285
NZ_PYKE01000004.1	Protein Homology	CDS	56826	58511	.	+	0	ID=cds-WP_135369908.1;Parent=gene-C9F05_RS00285;Dbxref=GenBank:WP_135369908.1;Name=WP_135369908.1;Ontology_term=GO:0006260,GO:0006281,GO:0003911;gbkey=CDS;gene=ligB;go_function=DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462639.1;locus_tag=C9F05_RS00285;product=NAD-dependent DNA ligase LigB;protein_id=WP_135369908.1;transl_table=11
NZ_PYKE01000004.1	RefSeq	gene	58508	59125	.	-	.	ID=gene-C9F05_RS00290;Name=C9F05_RS00290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00290;old_locus_tag=C9F05_00290
NZ_PYKE01000004.1	Protein Homology	CDS	58508	59125	.	-	0	ID=cds-WP_000924334.1;Parent=gene-C9F05_RS00290;Dbxref=GenBank:WP_000924334.1;Name=WP_000924334.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462638.1;locus_tag=C9F05_RS00290;product=trimeric intracellular cation channel family protein;protein_id=WP_000924334.1;transl_table=11
##sequence-region NZ_PYKE01000264.1 1 432
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000264.1	RefSeq	region	1	432	.	+	.	ID=NZ_PYKE01000264.1:1..432;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000264.1	RefSeq	pseudogene	1	432	.	-	.	ID=gene-C9F05_RS17620;Name=C9F05_RS17620;end_range=432,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS17620;old_locus_tag=C9F05_18110;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000264.1	Protein Homology	CDS	1	432	.	-	2	ID=cds-C9F05_RS17620;Parent=gene-C9F05_RS17620;Note=catalyzes the formation of pyruvate from oxaloacetate%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=432,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9F05_RS17620;partial=true;product=sodium-extruding oxaloacetate decarboxylase subunit alpha;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000265.1 1 17304
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000265.1	RefSeq	region	1	17304	.	+	.	ID=NZ_PYKE01000265.1:1..17304;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000265.1	RefSeq	gene	474	779	.	-	.	ID=gene-C9F05_RS17630;Name=cbpM;gbkey=Gene;gene=cbpM;gene_biotype=protein_coding;locus_tag=C9F05_RS17630;old_locus_tag=C9F05_18120
NZ_PYKE01000265.1	Protein Homology	CDS	474	779	.	-	0	ID=cds-WP_001284251.1;Parent=gene-C9F05_RS17630;Dbxref=GenBank:WP_001284251.1;Name=WP_001284251.1;gbkey=CDS;gene=cbpM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460084.1;locus_tag=C9F05_RS17630;product=chaperone modulator CbpM;protein_id=WP_001284251.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	779	1699	.	-	.	ID=gene-C9F05_RS17635;Name=cbpA;gbkey=Gene;gene=cbpA;gene_biotype=protein_coding;locus_tag=C9F05_RS17635;old_locus_tag=C9F05_18125
NZ_PYKE01000265.1	Protein Homology	CDS	779	1699	.	-	0	ID=cds-WP_000420603.1;Parent=gene-C9F05_RS17635;Dbxref=GenBank:WP_000420603.1;Name=WP_000420603.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=cbpA;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460085.1;locus_tag=C9F05_RS17635;product=curved DNA-binding protein;protein_id=WP_000420603.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	1935	2297	.	+	.	ID=gene-C9F05_RS17640;Name=C9F05_RS17640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17640;old_locus_tag=C9F05_18135
NZ_PYKE01000265.1	Protein Homology	CDS	1935	2297	.	+	0	ID=cds-WP_001118902.1;Parent=gene-C9F05_RS17640;Dbxref=GenBank:WP_001118902.1;Name=WP_001118902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460086.1;locus_tag=C9F05_RS17640;product=copper resistance protein;protein_id=WP_001118902.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	2346	4232	.	+	.	ID=gene-C9F05_RS17645;Name=C9F05_RS17645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17645;old_locus_tag=C9F05_18140
NZ_PYKE01000265.1	Protein Homology	CDS	2346	4232	.	+	0	ID=cds-WP_135370507.1;Parent=gene-C9F05_RS17645;Dbxref=GenBank:WP_135370507.1;Name=WP_135370507.1;Ontology_term=GO:0009055,GO:0015036;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460087.1;locus_tag=C9F05_RS17645;product=protein-disulfide reductase DsbD family protein;protein_id=WP_135370507.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	4229	4852	.	+	.	ID=gene-C9F05_RS17650;Name=C9F05_RS17650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17650;old_locus_tag=C9F05_18145
NZ_PYKE01000265.1	Protein Homology	CDS	4229	4852	.	+	0	ID=cds-WP_000876687.1;Parent=gene-C9F05_RS17650;Dbxref=GenBank:WP_000876687.1;Name=WP_000876687.1;Ontology_term=GO:0015036;gbkey=CDS;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460088.1;locus_tag=C9F05_RS17650;product=DsbA family protein;protein_id=WP_000876687.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	4842	5348	.	+	.	ID=gene-C9F05_RS17655;Name=C9F05_RS17655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17655;old_locus_tag=C9F05_18150
NZ_PYKE01000265.1	Protein Homology	CDS	4842	5348	.	+	0	ID=cds-WP_000729206.1;Parent=gene-C9F05_RS17655;Dbxref=GenBank:WP_000729206.1;Name=WP_000729206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460089.1;locus_tag=C9F05_RS17655;product=protein disulfide oxidoreductase;protein_id=WP_000729206.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	5481	6722	.	+	.	ID=gene-C9F05_RS17660;Name=agp;gbkey=Gene;gene=agp;gene_biotype=protein_coding;locus_tag=C9F05_RS17660;old_locus_tag=C9F05_18155
NZ_PYKE01000265.1	Protein Homology	CDS	5481	6722	.	+	0	ID=cds-WP_000749202.1;Parent=gene-C9F05_RS17660;Dbxref=GenBank:WP_000749202.1;Name=WP_000749202.1;gbkey=CDS;gene=agp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460090.1;locus_tag=C9F05_RS17660;product=bifunctional glucose-1-phosphatase/inositol phosphatase;protein_id=WP_000749202.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	6756	6983	.	-	.	ID=gene-C9F05_RS17665;Name=C9F05_RS17665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17665;old_locus_tag=C9F05_18160
NZ_PYKE01000265.1	Protein Homology	CDS	6756	6983	.	-	0	ID=cds-WP_001143125.1;Parent=gene-C9F05_RS17665;Dbxref=GenBank:WP_001143125.1;Name=WP_001143125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002898701.1;locus_tag=C9F05_RS17665;product=YccJ family protein;protein_id=WP_001143125.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	7004	7600	.	-	.	ID=gene-C9F05_RS17670;Name=wrbA;gbkey=Gene;gene=wrbA;gene_biotype=protein_coding;locus_tag=C9F05_RS17670;old_locus_tag=C9F05_18165
NZ_PYKE01000265.1	Protein Homology	CDS	7004	7600	.	-	0	ID=cds-WP_001062898.1;Parent=gene-C9F05_RS17670;Dbxref=GenBank:WP_001062898.1;Name=WP_001062898.1;Ontology_term=GO:0003955,GO:0010181;gbkey=CDS;gene=wrbA;go_function=NAD(P)H dehydrogenase (quinone) activity|0003955||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460092.1;locus_tag=C9F05_RS17670;product=NAD(P)H:quinone oxidoreductase;protein_id=WP_001062898.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	7985	8152	.	+	.	ID=gene-C9F05_RS17675;Name=C9F05_RS17675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17675;old_locus_tag=C9F05_18170
NZ_PYKE01000265.1	Protein Homology	CDS	7985	8152	.	+	0	ID=cds-WP_001273663.1;Parent=gene-C9F05_RS17675;Dbxref=GenBank:WP_001273663.1;Name=WP_001273663.1;Ontology_term=GO:0006950;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460093.1;locus_tag=C9F05_RS17675;product=general stress protein;protein_id=WP_001273663.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	8289	8927	.	+	.	ID=gene-C9F05_RS17680;Name=rutR;gbkey=Gene;gene=rutR;gene_biotype=protein_coding;locus_tag=C9F05_RS17680;old_locus_tag=C9F05_18175
NZ_PYKE01000265.1	Protein Homology	CDS	8289	8927	.	+	0	ID=cds-WP_000083128.1;Parent=gene-C9F05_RS17680;Dbxref=GenBank:WP_000083128.1;Name=WP_000083128.1;Ontology_term=GO:0045892,GO:0003677;gbkey=CDS;gene=rutR;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460094.1;locus_tag=C9F05_RS17680;product=HTH-type transcriptional regulator RutR;protein_id=WP_000083128.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	8924	9319	.	-	.	ID=gene-C9F05_RS17685;Name=C9F05_RS17685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17685;old_locus_tag=C9F05_18180
NZ_PYKE01000265.1	Protein Homology	CDS	8924	9319	.	-	0	ID=cds-WP_000821059.1;Parent=gene-C9F05_RS17685;Dbxref=GenBank:WP_000821059.1;Name=WP_000821059.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460095.1;locus_tag=C9F05_RS17685;product=lysozyme inhibitor LprI family protein;protein_id=WP_000821059.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	9378	13340	.	-	.	ID=gene-C9F05_RS17690;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=C9F05_RS17690;old_locus_tag=C9F05_18185
NZ_PYKE01000265.1	Protein Homology	CDS	9378	13340	.	-	0	ID=cds-WP_135370508.1;Parent=gene-C9F05_RS17690;Dbxref=GenBank:WP_135370508.1;Name=WP_135370508.1;Ontology_term=GO:0006355,GO:0055129,GO:0003700,GO:0003842,GO:0004657,GO:0016620;gbkey=CDS;gene=putA;go_function=DNA-binding transcription factor activity|0003700||IEA,L-glutamate gamma-semialdehyde dehydrogenase activity|0003842||IEA,proline dehydrogenase activity|0004657||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,L-proline biosynthetic process|0055129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447555.1;locus_tag=C9F05_RS17690;product=trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase;protein_id=WP_135370508.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	13761	15269	.	+	.	ID=gene-C9F05_RS17695;Name=putP;gbkey=Gene;gene=putP;gene_biotype=protein_coding;locus_tag=C9F05_RS17695;old_locus_tag=C9F05_18195
NZ_PYKE01000265.1	Protein Homology	CDS	13761	15269	.	+	0	ID=cds-WP_001018467.1;Parent=gene-C9F05_RS17695;Dbxref=GenBank:WP_001018467.1;Name=WP_001018467.1;Ontology_term=GO:0006814,GO:0015824,GO:0055085,GO:0005298,GO:0031402,GO:0016020;gbkey=CDS;gene=putP;go_component=membrane|0016020||IEA;go_function=proline:sodium symporter activity|0005298||IEA,sodium ion binding|0031402||IEA;go_process=sodium ion transport|0006814||IEA,proline transport|0015824||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460097.1;locus_tag=C9F05_RS17695;product=sodium/proline symporter PutP;protein_id=WP_001018467.1;transl_table=11
NZ_PYKE01000265.1	RefSeq	gene	16162	16950	.	+	.	ID=gene-C9F05_RS17700;Name=phoH;gbkey=Gene;gene=phoH;gene_biotype=protein_coding;locus_tag=C9F05_RS17700;old_locus_tag=C9F05_18205
NZ_PYKE01000265.1	Protein Homology	CDS	16162	16950	.	+	0	ID=cds-WP_000533526.1;Parent=gene-C9F05_RS17700;Dbxref=GenBank:WP_000533526.1;Name=WP_000533526.1;gbkey=CDS;gene=phoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000533526.1;locus_tag=C9F05_RS17700;product=phosphate starvation-inducible protein PhoH;protein_id=WP_000533526.1;transl_table=11
##sequence-region NZ_PYKE01000015.1 1 16987
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000015.1	RefSeq	region	1	16987	.	+	.	ID=NZ_PYKE01000015.1:1..16987;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000015.1	RefSeq	gene	305	1711	.	+	.	ID=gene-C9F05_RS00705;Name=chiP;gbkey=Gene;gene=chiP;gene_biotype=protein_coding;locus_tag=C9F05_RS00705;old_locus_tag=C9F05_00720
NZ_PYKE01000015.1	Protein Homology	CDS	305	1711	.	+	0	ID=cds-WP_001258803.1;Parent=gene-C9F05_RS00705;Dbxref=GenBank:WP_001258803.1;Name=WP_001258803.1;Ontology_term=GO:0015774,GO:0052778,GO:0015288;gbkey=CDS;gene=chiP;go_function=porin activity|0015288||IEA;go_process=polysaccharide transport|0015774||IEA,diacetylchitobiose metabolic process|0052778||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459672.1;locus_tag=C9F05_RS00705;product=chitoporin ChiP;protein_id=WP_001258803.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	1761	2093	.	+	.	ID=gene-C9F05_RS00710;Name=chiQ;gbkey=Gene;gene=chiQ;gene_biotype=protein_coding;locus_tag=C9F05_RS00710;old_locus_tag=C9F05_00725
NZ_PYKE01000015.1	Protein Homology	CDS	1761	2093	.	+	0	ID=cds-WP_000722260.1;Parent=gene-C9F05_RS00710;Dbxref=GenBank:WP_000722260.1;Name=WP_000722260.1;gbkey=CDS;gene=chiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459673.1;locus_tag=C9F05_RS00710;product=ChiQ/YbfN family lipoprotein;protein_id=WP_000722260.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	2142	3446	.	-	.	ID=gene-C9F05_RS00715;Name=tcuC;gbkey=Gene;gene=tcuC;gene_biotype=protein_coding;locus_tag=C9F05_RS00715;old_locus_tag=C9F05_00730
NZ_PYKE01000015.1	Protein Homology	CDS	2142	3446	.	-	0	ID=cds-WP_000057014.1;Parent=gene-C9F05_RS00715;Dbxref=GenBank:WP_000057014.1;Name=WP_000057014.1;gbkey=CDS;gene=tcuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459674.1;locus_tag=C9F05_RS00715;product=tricarballylate/proton symporter TcuC;protein_id=WP_000057014.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	3497	4636	.	-	.	ID=gene-C9F05_RS00720;Name=tcuB;gbkey=Gene;gene=tcuB;gene_biotype=protein_coding;locus_tag=C9F05_RS00720;old_locus_tag=C9F05_00735
NZ_PYKE01000015.1	Protein Homology	CDS	3497	4636	.	-	0	ID=cds-WP_000811134.1;Parent=gene-C9F05_RS00720;Dbxref=GenBank:WP_000811134.1;Name=WP_000811134.1;gbkey=CDS;gene=tcuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459675.1;locus_tag=C9F05_RS00720;product=tricarballylate utilization protein TcuB;protein_id=WP_000811134.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	4623	6026	.	-	.	ID=gene-C9F05_RS00725;Name=tcuA;gbkey=Gene;gene=tcuA;gene_biotype=protein_coding;locus_tag=C9F05_RS00725;old_locus_tag=C9F05_00740
NZ_PYKE01000015.1	Protein Homology	CDS	4623	6026	.	-	0	ID=cds-WP_135369934.1;Parent=gene-C9F05_RS00725;Dbxref=GenBank:WP_135369934.1;Name=WP_135369934.1;gbkey=CDS;gene=tcuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459676.1;locus_tag=C9F05_RS00725;product=FAD-dependent tricarballylate dehydrogenase TcuA;protein_id=WP_135369934.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	6124	7050	.	-	.	ID=gene-C9F05_RS00730;Name=tcuR;gbkey=Gene;gene=tcuR;gene_biotype=protein_coding;locus_tag=C9F05_RS00730;old_locus_tag=C9F05_00745
NZ_PYKE01000015.1	Protein Homology	CDS	6124	7050	.	-	0	ID=cds-WP_000423371.1;Parent=gene-C9F05_RS00730;Dbxref=GenBank:WP_000423371.1;Name=WP_000423371.1;gbkey=CDS;gene=tcuR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459677.1;locus_tag=C9F05_RS00730;product=tricarballylate utilization LysR family transcriptional regulator TcuR;protein_id=WP_000423371.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	7165	7617	.	-	.	ID=gene-C9F05_RS00735;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=C9F05_RS00735;old_locus_tag=C9F05_00750
NZ_PYKE01000015.1	Protein Homology	CDS	7165	7617	.	-	0	ID=cds-WP_000131699.1;Parent=gene-C9F05_RS00735;Dbxref=GenBank:WP_000131699.1;Name=WP_000131699.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=fur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459678.1;locus_tag=C9F05_RS00735;product=ferric iron uptake transcriptional regulator;protein_id=WP_000131699.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	pseudogene	7610	7695	.	-	.	ID=gene-C9F05_RS23620;Name=C9F05_RS23620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23620;pseudo=true
NZ_PYKE01000015.1	Protein Homology	CDS	7610	7695	.	-	0	ID=cds-C9F05_RS23620;Parent=gene-C9F05_RS23620;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001491546.1;locus_tag=C9F05_RS23620;product=fur leader peptide;pseudo=true;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	7899	8429	.	-	.	ID=gene-C9F05_RS00740;Name=fldA;gbkey=Gene;gene=fldA;gene_biotype=protein_coding;locus_tag=C9F05_RS00740;old_locus_tag=C9F05_00755
NZ_PYKE01000015.1	Protein Homology	CDS	7899	8429	.	-	0	ID=cds-WP_001018621.1;Parent=gene-C9F05_RS00740;Dbxref=GenBank:WP_001018621.1;Name=WP_001018621.1;gbkey=CDS;gene=fldA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459679.1;locus_tag=C9F05_RS00740;product=flavodoxin FldA;protein_id=WP_001018621.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	8580	8873	.	-	.	ID=gene-C9F05_RS00745;Name=ybfE;gbkey=Gene;gene=ybfE;gene_biotype=protein_coding;locus_tag=C9F05_RS00745;old_locus_tag=C9F05_00760
NZ_PYKE01000015.1	Protein Homology	CDS	8580	8873	.	-	0	ID=cds-WP_135369935.1;Parent=gene-C9F05_RS00745;Dbxref=GenBank:WP_135369935.1;Name=WP_135369935.1;gbkey=CDS;gene=ybfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459680.1;locus_tag=C9F05_RS00745;product=LexA regulated protein;protein_id=WP_135369935.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	9007	9777	.	-	.	ID=gene-C9F05_RS00750;Name=ybfF;gbkey=Gene;gene=ybfF;gene_biotype=protein_coding;locus_tag=C9F05_RS00750;old_locus_tag=C9F05_00765
NZ_PYKE01000015.1	Protein Homology	CDS	9007	9777	.	-	0	ID=cds-WP_000773245.1;Parent=gene-C9F05_RS00750;Dbxref=GenBank:WP_000773245.1;Name=WP_000773245.1;gbkey=CDS;gene=ybfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459681.1;locus_tag=C9F05_RS00750;product=esterase;protein_id=WP_000773245.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	9962	10504	.	+	.	ID=gene-C9F05_RS00755;Name=seqA;gbkey=Gene;gene=seqA;gene_biotype=protein_coding;locus_tag=C9F05_RS00755;old_locus_tag=C9F05_00770
NZ_PYKE01000015.1	Protein Homology	CDS	9962	10504	.	+	0	ID=cds-WP_000848395.1;Parent=gene-C9F05_RS00755;Dbxref=GenBank:WP_000848395.1;Name=WP_000848395.1;Ontology_term=GO:0032297,GO:0003677;gbkey=CDS;gene=seqA;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated DNA replication initiation|0032297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459682.1;locus_tag=C9F05_RS00755;product=replication initiation negative regulator SeqA;protein_id=WP_000848395.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	10529	12169	.	+	.	ID=gene-C9F05_RS00760;Name=pgm;gbkey=Gene;gene=pgm;gene_biotype=protein_coding;locus_tag=C9F05_RS00760;old_locus_tag=C9F05_00775
NZ_PYKE01000015.1	Protein Homology	CDS	10529	12169	.	+	0	ID=cds-WP_000974385.1;Parent=gene-C9F05_RS00760;Dbxref=GenBank:WP_000974385.1;Name=WP_000974385.1;Ontology_term=GO:0005975,GO:0004614;gbkey=CDS;gene=pgm;go_function=phosphoglucomutase activity|0004614||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459683.1;locus_tag=C9F05_RS00760;product=phosphoglucomutase (alpha-D-glucose-1%2C6-bisphosphate-dependent);protein_id=WP_000974385.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	12284	12769	.	-	.	ID=gene-C9F05_RS00765;Name=C9F05_RS00765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00765;old_locus_tag=C9F05_00780
NZ_PYKE01000015.1	Protein Homology	CDS	12284	12769	.	-	0	ID=cds-WP_079942214.1;Parent=gene-C9F05_RS00765;Dbxref=GenBank:WP_079942214.1;Name=WP_079942214.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459684.1;locus_tag=C9F05_RS00765;product=pyridoxamine 5'-phosphate oxidase family protein;protein_id=WP_079942214.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	12834	14153	.	-	.	ID=gene-C9F05_RS00770;Name=potE;gbkey=Gene;gene=potE;gene_biotype=protein_coding;locus_tag=C9F05_RS00770;old_locus_tag=C9F05_00785
NZ_PYKE01000015.1	Protein Homology	CDS	12834	14153	.	-	0	ID=cds-WP_000042658.1;Parent=gene-C9F05_RS00770;Dbxref=GenBank:WP_000042658.1;Name=WP_000042658.1;Ontology_term=GO:0015822,GO:0015847,GO:0055085,GO:0015496,GO:0016020;gbkey=CDS;gene=potE;go_component=membrane|0016020||IEA;go_function=putrescine:ornithine antiporter activity|0015496||IEA;go_process=ornithine transport|0015822||IEA,putrescine transport|0015847||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459685.1;locus_tag=C9F05_RS00770;product=putrescine-ornithine antiporter;protein_id=WP_000042658.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	14150	16348	.	-	.	ID=gene-C9F05_RS00775;Name=speF;gbkey=Gene;gene=speF;gene_biotype=protein_coding;locus_tag=C9F05_RS00775;old_locus_tag=C9F05_00790
NZ_PYKE01000015.1	Protein Homology	CDS	14150	16348	.	-	0	ID=cds-WP_001292402.1;Parent=gene-C9F05_RS00775;Dbxref=GenBank:WP_001292402.1;Name=WP_001292402.1;Ontology_term=GO:0006520,GO:0004586;gbkey=CDS;gene=speF;go_function=ornithine decarboxylase activity|0004586||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459686.1;locus_tag=C9F05_RS00775;product=ornithine decarboxylase SpeF;protein_id=WP_001292402.1;transl_table=11
NZ_PYKE01000015.1	RefSeq	gene	16728	16832	.	-	.	ID=gene-C9F05_RS00780;Name=speFL;gbkey=Gene;gene=speFL;gene_biotype=protein_coding;locus_tag=C9F05_RS00780
NZ_PYKE01000015.1	Protein Homology	CDS	16728	16832	.	-	0	ID=cds-WP_015632840.1;Parent=gene-C9F05_RS00780;Dbxref=GenBank:WP_015632840.1;Name=WP_015632840.1;gbkey=CDS;gene=speFL;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051176.1;locus_tag=C9F05_RS00780;product=leader peptide SpeFL;protein_id=WP_015632840.1;transl_table=11
##sequence-region NZ_PYKE01000109.1 1 16812
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000109.1	RefSeq	region	1	16812	.	+	.	ID=NZ_PYKE01000109.1:1..16812;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000109.1	RefSeq	gene	1	1177	.	-	.	ID=gene-C9F05_RS08025;Name=sipB;gbkey=Gene;gene=sipB;gene_biotype=protein_coding;locus_tag=C9F05_RS08025;old_locus_tag=C9F05_08215;partial=true;start_range=.,1
NZ_PYKE01000109.1	Protein Homology	CDS	1	1177	.	-	0	ID=cds-WP_135370169.1;Parent=gene-C9F05_RS08025;Dbxref=GenBank:WP_135370169.1;Name=WP_135370169.1;gbkey=CDS;gene=sipB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461806.1;locus_tag=C9F05_RS08025;partial=true;product=SPI-1 type III secretion system needle tip complex protein SipB;protein_id=WP_135370169.1;start_range=.,1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	1180	1677	.	-	.	ID=gene-C9F05_RS08030;Name=sicA;gbkey=Gene;gene=sicA;gene_biotype=protein_coding;locus_tag=C9F05_RS08030;old_locus_tag=C9F05_08220
NZ_PYKE01000109.1	Protein Homology	CDS	1180	1677	.	-	0	ID=cds-WP_000386309.1;Parent=gene-C9F05_RS08030;Dbxref=GenBank:WP_000386309.1;Name=WP_000386309.1;gbkey=CDS;gene=sicA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461807.1;locus_tag=C9F05_RS08030;product=SycD/LcrH family type III secretion system chaperone SicA;protein_id=WP_000386309.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	1815	2885	.	-	.	ID=gene-C9F05_RS08035;Name=spaS;gbkey=Gene;gene=spaS;gene_biotype=protein_coding;locus_tag=C9F05_RS08035;old_locus_tag=C9F05_08225
NZ_PYKE01000109.1	Protein Homology	CDS	1815	2885	.	-	0	ID=cds-WP_000097719.1;Parent=gene-C9F05_RS08035;Dbxref=GenBank:WP_000097719.1;Name=WP_000097719.1;gbkey=CDS;gene=spaS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461808.1;locus_tag=C9F05_RS08035;product=SPI-1 type III secretion system export apparatus protein SpaS;protein_id=WP_000097719.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	2872	3663	.	-	.	ID=gene-C9F05_RS08040;Name=spaR;gbkey=Gene;gene=spaR;gene_biotype=protein_coding;locus_tag=C9F05_RS08040;old_locus_tag=C9F05_08230
NZ_PYKE01000109.1	Protein Homology	CDS	2872	3663	.	-	0	ID=cds-WP_000498965.1;Parent=gene-C9F05_RS08040;Dbxref=GenBank:WP_000498965.1;Name=WP_000498965.1;gbkey=CDS;gene=spaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461809.1;locus_tag=C9F05_RS08040;product=SPI-1 type III secretion system export apparatus protein SpaR;protein_id=WP_000498965.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	3667	3927	.	-	.	ID=gene-C9F05_RS08045;Name=spaQ;gbkey=Gene;gene=spaQ;gene_biotype=protein_coding;locus_tag=C9F05_RS08045;old_locus_tag=C9F05_08235
NZ_PYKE01000109.1	Protein Homology	CDS	3667	3927	.	-	0	ID=cds-WP_000342503.1;Parent=gene-C9F05_RS08045;Dbxref=GenBank:WP_000342503.1;Name=WP_000342503.1;gbkey=CDS;gene=spaQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461810.1;locus_tag=C9F05_RS08045;product=SPI-1 type III secretion system export apparatus protein SpaQ;protein_id=WP_000342503.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	3953	4627	.	-	.	ID=gene-C9F05_RS08050;Name=spaP;gbkey=Gene;gene=spaP;gene_biotype=protein_coding;locus_tag=C9F05_RS08050;old_locus_tag=C9F05_08240
NZ_PYKE01000109.1	Protein Homology	CDS	3953	4627	.	-	0	ID=cds-WP_000526016.1;Parent=gene-C9F05_RS08050;Dbxref=GenBank:WP_000526016.1;Name=WP_000526016.1;gbkey=CDS;gene=spaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461811.1;locus_tag=C9F05_RS08050;product=SPI-1 type III secretion system export apparatus protein SpaP;protein_id=WP_000526016.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	4617	5528	.	-	.	ID=gene-C9F05_RS08055;Name=spaO;gbkey=Gene;gene=spaO;gene_biotype=protein_coding;locus_tag=C9F05_RS08055;old_locus_tag=C9F05_08245
NZ_PYKE01000109.1	Protein Homology	CDS	4617	5528	.	-	0	ID=cds-WP_000058734.1;Parent=gene-C9F05_RS08055;Dbxref=GenBank:WP_000058734.1;Name=WP_000058734.1;gbkey=CDS;gene=spaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461812.1;locus_tag=C9F05_RS08055;product=SPI-1 type III secretion system protein SpaO;protein_id=WP_000058734.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	5528	6538	.	-	.	ID=gene-C9F05_RS08060;Name=spaN;gbkey=Gene;gene=spaN;gene_biotype=protein_coding;locus_tag=C9F05_RS08060;old_locus_tag=C9F05_08250
NZ_PYKE01000109.1	Protein Homology	CDS	5528	6538	.	-	0	ID=cds-WP_135370170.1;Parent=gene-C9F05_RS08060;Dbxref=GenBank:WP_135370170.1;Name=WP_135370170.1;gbkey=CDS;gene=spaN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461813.1;locus_tag=C9F05_RS08060;product=SPI-1 type III secretion system protein SpaN;protein_id=WP_135370170.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	6538	6981	.	-	.	ID=gene-C9F05_RS08065;Name=spaM;gbkey=Gene;gene=spaM;gene_biotype=protein_coding;locus_tag=C9F05_RS08065;old_locus_tag=C9F05_08255
NZ_PYKE01000109.1	Protein Homology	CDS	6538	6981	.	-	0	ID=cds-WP_080190138.1;Parent=gene-C9F05_RS08065;Dbxref=GenBank:WP_080190138.1;Name=WP_080190138.1;gbkey=CDS;gene=spaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461814.1;locus_tag=C9F05_RS08065;product=SPI-1 type III secretion system protein SpaM;protein_id=WP_080190138.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	6959	8254	.	-	.	ID=gene-C9F05_RS08070;Name=invC;gbkey=Gene;gene=invC;gene_biotype=protein_coding;locus_tag=C9F05_RS08070;old_locus_tag=C9F05_08260
NZ_PYKE01000109.1	Protein Homology	CDS	6959	8254	.	-	0	ID=cds-WP_045342102.1;Parent=gene-C9F05_RS08070;Dbxref=GenBank:WP_045342102.1;Name=WP_045342102.1;gbkey=CDS;gene=invC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461815.1;locus_tag=C9F05_RS08070;product=SctN family type III secretion system ATPase InvC;protein_id=WP_045342102.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	8251	8658	.	-	.	ID=gene-C9F05_RS08075;Name=spaK;gbkey=Gene;gene=spaK;gene_biotype=protein_coding;locus_tag=C9F05_RS08075;old_locus_tag=C9F05_08265
NZ_PYKE01000109.1	Protein Homology	CDS	8251	8658	.	-	0	ID=cds-WP_001164066.1;Parent=gene-C9F05_RS08075;Dbxref=GenBank:WP_001164066.1;Name=WP_001164066.1;gbkey=CDS;gene=spaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461816.1;locus_tag=C9F05_RS08075;product=SPI-1 type III secretion system chaperone SpaK;protein_id=WP_001164066.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	8682	10739	.	-	.	ID=gene-C9F05_RS08080;Name=invA;gbkey=Gene;gene=invA;gene_biotype=protein_coding;locus_tag=C9F05_RS08080;old_locus_tag=C9F05_08270
NZ_PYKE01000109.1	Protein Homology	CDS	8682	10739	.	-	0	ID=cds-WP_000927219.1;Parent=gene-C9F05_RS08080;Dbxref=GenBank:WP_000927219.1;Name=WP_000927219.1;gbkey=CDS;gene=invA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461817.1;locus_tag=C9F05_RS08080;product=type III secretion system export apparatus protein InvA;protein_id=WP_000927219.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	10764	11882	.	-	.	ID=gene-C9F05_RS08085;Name=invE;gbkey=Gene;gene=invE;gene_biotype=protein_coding;locus_tag=C9F05_RS08085;old_locus_tag=C9F05_08275
NZ_PYKE01000109.1	Protein Homology	CDS	10764	11882	.	-	0	ID=cds-WP_000612171.1;Parent=gene-C9F05_RS08085;Dbxref=GenBank:WP_000612171.1;Name=WP_000612171.1;gbkey=CDS;gene=invE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461818.1;locus_tag=C9F05_RS08085;product=type III secretion system gatekeeper InvE;protein_id=WP_000612171.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	11879	13567	.	-	.	ID=gene-C9F05_RS08090;Name=invG;gbkey=Gene;gene=invG;gene_biotype=protein_coding;locus_tag=C9F05_RS08090;old_locus_tag=C9F05_08280
NZ_PYKE01000109.1	Protein Homology	CDS	11879	13567	.	-	0	ID=cds-WP_000848102.1;Parent=gene-C9F05_RS08090;Dbxref=GenBank:WP_000848102.1;Name=WP_000848102.1;gbkey=CDS;gene=invG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461819.1;locus_tag=C9F05_RS08090;product=type III secretion system outer membrane ring protein InvG;protein_id=WP_000848102.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	13564	14214	.	-	.	ID=gene-C9F05_RS08095;Name=invF;gbkey=Gene;gene=invF;gene_biotype=protein_coding;locus_tag=C9F05_RS08095;old_locus_tag=C9F05_08285
NZ_PYKE01000109.1	Protein Homology	CDS	13564	14214	.	-	0	ID=cds-WP_001674874.1;Parent=gene-C9F05_RS08095;Dbxref=GenBank:WP_001674874.1;Name=WP_001674874.1;gbkey=CDS;gene=invF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461820.1;locus_tag=C9F05_RS08095;product=type III secretion system transcriptional activator InvF;protein_id=WP_001674874.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	14670	15113	.	+	.	ID=gene-C9F05_RS08100;Name=invH;gbkey=Gene;gene=invH;gene_biotype=protein_coding;locus_tag=C9F05_RS08100;old_locus_tag=C9F05_08290
NZ_PYKE01000109.1	Protein Homology	CDS	14670	15113	.	+	0	ID=cds-WP_000715096.1;Parent=gene-C9F05_RS08100;Dbxref=GenBank:WP_000715096.1;Name=WP_000715096.1;gbkey=CDS;gene=invH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461821.1;locus_tag=C9F05_RS08100;product=SPI-1 type III secretion system invasion lipoprotein InvH;protein_id=WP_000715096.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	15545	15994	.	+	.	ID=gene-C9F05_RS08105;Name=C9F05_RS08105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08105;old_locus_tag=C9F05_08295
NZ_PYKE01000109.1	Protein Homology	CDS	15545	15994	.	+	0	ID=cds-WP_023201504.1;Parent=gene-C9F05_RS08105;Dbxref=GenBank:WP_023201504.1;Name=WP_023201504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461822.1;locus_tag=C9F05_RS08105;product=STM2901 family protein;protein_id=WP_023201504.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	gene	15979	16326	.	+	.	ID=gene-C9F05_RS08110;Name=C9F05_RS08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08110;old_locus_tag=C9F05_08300
NZ_PYKE01000109.1	Protein Homology	CDS	15979	16326	.	+	0	ID=cds-WP_077946802.1;Parent=gene-C9F05_RS08110;Dbxref=GenBank:WP_077946802.1;Name=WP_077946802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461823.1;locus_tag=C9F05_RS08110;product=DUF1493 family protein;protein_id=WP_077946802.1;transl_table=11
NZ_PYKE01000109.1	RefSeq	pseudogene	16599	16805	.	-	.	ID=gene-C9F05_RS08115;Name=C9F05_RS08115;end_range=16805,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS08115;old_locus_tag=C9F05_08305;partial=true;pseudo=true
NZ_PYKE01000109.1	Protein Homology	CDS	16599	16805	.	-	0	ID=cds-C9F05_RS08115;Parent=gene-C9F05_RS08115;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=16805,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461824.1;locus_tag=C9F05_RS08115;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000326.1 1 396
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000326.1	RefSeq	region	1	396	.	+	.	ID=NZ_PYKE01000326.1:1..396;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000326.1	RefSeq	gene	1	396	.	+	.	ID=gene-C9F05_RS22220;Name=C9F05_RS22220;end_range=396,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22220;old_locus_tag=C9F05_22805;partial=true;start_range=.,1
NZ_PYKE01000326.1	Protein Homology	CDS	1	396	.	+	2	ID=cds-WP_303396436.1;Parent=gene-C9F05_RS22220;Dbxref=GenBank:WP_303396436.1;Name=WP_303396436.1;end_range=396,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9F05_RS22220;partial=true;product=biotin/lipoyl-containing protein;protein_id=WP_303396436.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000059.1 1 16789
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000059.1	RefSeq	region	1	16789	.	+	.	ID=NZ_PYKE01000059.1:1..16789;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000059.1	RefSeq	pseudogene	1	601	.	-	.	ID=gene-C9F05_RS03535;Name=C9F05_RS03535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS03535;old_locus_tag=C9F05_03595;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000059.1	Protein Homology	CDS	1	601	.	-	0	ID=cds-C9F05_RS03535;Parent=gene-C9F05_RS03535;Note=catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase%3B also catalyzes the reverse reaction - deadenylation%3B adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462116.1;locus_tag=C9F05_RS03535;partial=true;product=bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	719	2020	.	-	.	ID=gene-C9F05_RS03540;Name=C9F05_RS03540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03540;old_locus_tag=C9F05_03600
NZ_PYKE01000059.1	Protein Homology	CDS	719	2020	.	-	0	ID=cds-WP_135370035.1;Parent=gene-C9F05_RS03540;Dbxref=GenBank:WP_135370035.1;Name=WP_135370035.1;Ontology_term=GO:0046872,GO:0050355;gbkey=CDS;go_function=metal ion binding|0046872||IEA,inorganic triphosphate phosphatase activity|0050355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462117.1;locus_tag=C9F05_RS03540;product=CYTH domain-containing protein;protein_id=WP_135370035.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	2262	2876	.	+	.	ID=gene-C9F05_RS03545;Name=C9F05_RS03545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03545;old_locus_tag=C9F05_03610
NZ_PYKE01000059.1	Protein Homology	CDS	2262	2876	.	+	0	ID=cds-WP_001125341.1;Parent=gene-C9F05_RS03545;Dbxref=GenBank:WP_001125341.1;Name=WP_001125341.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462118.1;locus_tag=C9F05_RS03545;product=TIGR04211 family SH3 domain-containing protein;protein_id=WP_001125341.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	2939	4180	.	+	.	ID=gene-C9F05_RS03550;Name=C9F05_RS03550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03550;old_locus_tag=C9F05_03615
NZ_PYKE01000059.1	Protein Homology	CDS	2939	4180	.	+	0	ID=cds-WP_000708447.1;Parent=gene-C9F05_RS03550;Dbxref=GenBank:WP_000708447.1;Name=WP_000708447.1;Ontology_term=GO:0001680,GO:0003723,GO:0004810,GO:0005524;gbkey=CDS;go_function=RNA binding|0003723||IEA,CCA tRNA nucleotidyltransferase activity|0004810||IEA,ATP binding|0005524||IEA;go_process=tRNA 3'-terminal CCA addition|0001680||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462119.1;locus_tag=C9F05_RS03550;product=multifunctional CCA addition/repair protein;protein_id=WP_000708447.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	4285	5106	.	-	.	ID=gene-C9F05_RS03555;Name=bacA;gbkey=Gene;gene=bacA;gene_biotype=protein_coding;locus_tag=C9F05_RS03555;old_locus_tag=C9F05_03620
NZ_PYKE01000059.1	Protein Homology	CDS	4285	5106	.	-	0	ID=cds-WP_001281933.1;Parent=gene-C9F05_RS03555;Dbxref=GenBank:WP_001281933.1;Name=WP_001281933.1;Ontology_term=GO:0016311,GO:0050380,GO:0016020;gbkey=CDS;gene=bacA;go_component=membrane|0016020||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311967.1;locus_tag=C9F05_RS03555;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_001281933.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	5204	5563	.	-	.	ID=gene-C9F05_RS03560;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=C9F05_RS03560;old_locus_tag=C9F05_03625
NZ_PYKE01000059.1	Protein Homology	CDS	5204	5563	.	-	0	ID=cds-WP_000355776.1;Parent=gene-C9F05_RS03560;Dbxref=GenBank:WP_000355776.1;Name=WP_000355776.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folB;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001681574.1;locus_tag=C9F05_RS03560;product=bifunctional dihydroneopterin aldolase/7%2C8-dihydroneopterin epimerase;protein_id=WP_000355776.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	5670	6281	.	+	.	ID=gene-C9F05_RS03565;Name=plsY;gbkey=Gene;gene=plsY;gene_biotype=protein_coding;locus_tag=C9F05_RS03565;old_locus_tag=C9F05_03630
NZ_PYKE01000059.1	Protein Homology	CDS	5670	6281	.	+	0	ID=cds-WP_001272784.1;Parent=gene-C9F05_RS03565;Dbxref=GenBank:WP_001272784.1;Name=WP_001272784.1;Ontology_term=GO:0006654,GO:0008374,GO:0005886;gbkey=CDS;gene=plsY;go_component=plasma membrane|0005886||IEA;go_function=O-acyltransferase activity|0008374||IEA;go_process=phosphatidic acid biosynthetic process|0006654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462122.1;locus_tag=C9F05_RS03565;product=glycerol-3-phosphate 1-O-acyltransferase PlsY;protein_id=WP_001272784.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	pseudogene	6265	6408	.	+	.	ID=gene-C9F05_RS23540;Name=C9F05_RS23540;end_range=6408,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23540;partial=true;pseudo=true;start_range=.,6265
NZ_PYKE01000059.1	Protein Homology	CDS	6265	6408	.	+	0	ID=cds-C9F05_RS23540;Parent=gene-C9F05_RS23540;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0016829;end_range=6408,.;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311971.1;locus_tag=C9F05_RS23540;partial=true;product=fumarate hydratase;pseudo=true;start_range=.,6265;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	6531	7544	.	-	.	ID=gene-C9F05_RS03575;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=C9F05_RS03575;old_locus_tag=C9F05_03640
NZ_PYKE01000059.1	Protein Homology	CDS	6531	7544	.	-	0	ID=cds-WP_001264391.1;Parent=gene-C9F05_RS03575;Dbxref=GenBank:WP_001264391.1;Name=WP_001264391.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaD;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001264383.1;locus_tag=C9F05_RS03575;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_001264391.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	7772	7987	.	+	.	ID=gene-C9F05_RS03580;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=C9F05_RS03580;old_locus_tag=C9F05_03645
NZ_PYKE01000059.1	Protein Homology	CDS	7772	7987	.	+	0	ID=cds-WP_001144069.1;Parent=gene-C9F05_RS03580;Dbxref=GenBank:WP_001144069.1;Name=WP_001144069.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsU;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311975.1;locus_tag=C9F05_RS03580;product=30S ribosomal protein S21;protein_id=WP_001144069.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	8223	9968	.	+	.	ID=gene-C9F05_RS03585;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=C9F05_RS03585;old_locus_tag=C9F05_03650
NZ_PYKE01000059.1	Protein Homology	CDS	8223	9968	.	+	0	ID=cds-WP_000918865.1;Parent=gene-C9F05_RS03585;Dbxref=GenBank:WP_000918865.1;Name=WP_000918865.1;Ontology_term=GO:0006269,GO:0003899;gbkey=CDS;gene=dnaG;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA replication%2C synthesis of primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462125.1;locus_tag=C9F05_RS03585;product=DNA primase;protein_id=WP_000918865.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	9983	11965	.	+	.	ID=gene-C9F05_RS03590;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=C9F05_RS03590;old_locus_tag=C9F05_03655
NZ_PYKE01000059.1	Protein Homology	CDS	9983	11965	.	+	0	ID=cds-WP_001120159.1;Parent=gene-C9F05_RS03590;Dbxref=GenBank:WP_001120159.1;Name=WP_001120159.1;Ontology_term=GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: protein motif:HMM:NF004208.0;locus_tag=C9F05_RS03590;product=RNA polymerase sigma factor RpoD;protein_id=WP_001120159.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	12025	12588	.	+	.	ID=gene-C9F05_RS03595;Name=C9F05_RS03595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03595;old_locus_tag=C9F05_03660
NZ_PYKE01000059.1	Protein Homology	CDS	12025	12588	.	+	0	ID=cds-WP_001183951.1;Parent=gene-C9F05_RS03595;Dbxref=GenBank:WP_001183951.1;Name=WP_001183951.1;Ontology_term=GO:0016799;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001183949.1;locus_tag=C9F05_RS03595;product=NADAR family protein;protein_id=WP_001183951.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	12645	13151	.	-	.	ID=gene-C9F05_RS03600;Name=mug;gbkey=Gene;gene=mug;gene_biotype=protein_coding;locus_tag=C9F05_RS03600;old_locus_tag=C9F05_03665
NZ_PYKE01000059.1	Protein Homology	CDS	12645	13151	.	-	0	ID=cds-WP_000237780.1;Parent=gene-C9F05_RS03600;Dbxref=GenBank:WP_000237780.1;Name=WP_000237780.1;Ontology_term=GO:0006285,GO:0000700;gbkey=CDS;gene=mug;go_function=mismatch base pair DNA N-glycosylase activity|0000700||IEA;go_process=base-excision repair%2C AP site formation|0006285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462127.1;locus_tag=C9F05_RS03600;product=G/U mismatch-specific DNA glycosylase;protein_id=WP_000237780.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	13277	13352	.	+	.	ID=gene-C9F05_RS03605;Name=C9F05_RS03605;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS03605;old_locus_tag=C9F05_03670
NZ_PYKE01000059.1	tRNAscan-SE	tRNA	13277	13352	.	+	.	ID=rna-C9F05_RS03605;Parent=gene-C9F05_RS03605;anticodon=(pos:13310..13312);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS03605;product=tRNA-Ile
NZ_PYKE01000059.1	tRNAscan-SE	exon	13277	13352	.	+	.	ID=exon-C9F05_RS03605-1;Parent=rna-C9F05_RS03605;anticodon=(pos:13310..13312);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS03605;product=tRNA-Ile
NZ_PYKE01000059.1	RefSeq	gene	13432	14199	.	-	.	ID=gene-C9F05_RS03610;Name=C9F05_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03610;old_locus_tag=C9F05_03675
NZ_PYKE01000059.1	Protein Homology	CDS	13432	14199	.	-	0	ID=cds-WP_135370036.1;Parent=gene-C9F05_RS03610;Dbxref=GenBank:WP_135370036.1;Name=WP_135370036.1;Ontology_term=GO:0015891,GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462128.1;locus_tag=C9F05_RS03610;product=siderophore-interacting protein;protein_id=WP_135370036.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	14430	15077	.	+	.	ID=gene-C9F05_RS03615;Name=C9F05_RS03615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03615;old_locus_tag=C9F05_03680
NZ_PYKE01000059.1	Protein Homology	CDS	14430	15077	.	+	0	ID=cds-WP_000983434.1;Parent=gene-C9F05_RS03615;Dbxref=GenBank:WP_000983434.1;Name=WP_000983434.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462129.1;locus_tag=C9F05_RS03615;product=PadR family transcriptional regulator;protein_id=WP_000983434.1;transl_table=11
NZ_PYKE01000059.1	RefSeq	gene	15074	16642	.	-	.	ID=gene-C9F05_RS03620;Name=C9F05_RS03620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03620;old_locus_tag=C9F05_03685
NZ_PYKE01000059.1	Protein Homology	CDS	15074	16642	.	-	0	ID=cds-WP_000478462.1;Parent=gene-C9F05_RS03620;Dbxref=GenBank:WP_000478462.1;Name=WP_000478462.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462130.1;locus_tag=C9F05_RS03620;product=methyl-accepting chemotaxis protein;protein_id=WP_000478462.1;transl_table=11
##sequence-region NZ_PYKE01000160.1 1 16745
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000160.1	RefSeq	region	1	16745	.	+	.	ID=NZ_PYKE01000160.1:1..16745;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000160.1	RefSeq	gene	3	719	.	-	.	ID=gene-C9F05_RS11345;Name=C9F05_RS11345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11345;old_locus_tag=C9F05_11635
NZ_PYKE01000160.1	Protein Homology	CDS	3	719	.	-	0	ID=cds-WP_000532937.1;Parent=gene-C9F05_RS11345;Dbxref=GenBank:WP_000532937.1;Name=WP_000532937.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310807.1;locus_tag=C9F05_RS11345;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_000532937.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	1279	2910	.	-	.	ID=gene-C9F05_RS11350;Name=C9F05_RS11350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11350;old_locus_tag=C9F05_11645
NZ_PYKE01000160.1	Protein Homology	CDS	1279	2910	.	-	0	ID=cds-WP_135370284.1;Parent=gene-C9F05_RS11350;Dbxref=GenBank:WP_135370284.1;Name=WP_135370284.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463359.1;locus_tag=C9F05_RS11350;product=class I SAM-dependent methyltransferase;protein_id=WP_135370284.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	2915	3172	.	-	.	ID=gene-C9F05_RS11355;Name=C9F05_RS11355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11355;old_locus_tag=C9F05_11650
NZ_PYKE01000160.1	Protein Homology	CDS	2915	3172	.	-	0	ID=cds-WP_001054380.1;Parent=gene-C9F05_RS11355;Dbxref=GenBank:WP_001054380.1;Name=WP_001054380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463360.1;locus_tag=C9F05_RS11355;product=YjhX family toxin;protein_id=WP_001054380.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	3661	4269	.	+	.	ID=gene-C9F05_RS11365;Name=C9F05_RS11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11365;old_locus_tag=C9F05_11665
NZ_PYKE01000160.1	Protein Homology	CDS	3661	4269	.	+	0	ID=cds-WP_000864865.1;Parent=gene-C9F05_RS11365;Dbxref=GenBank:WP_000864865.1;Name=WP_000864865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463361.1;locus_tag=C9F05_RS11365;product=DUF1062 domain-containing protein;protein_id=WP_000864865.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	4645	5556	.	+	.	ID=gene-C9F05_RS11370;Name=C9F05_RS11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11370;old_locus_tag=C9F05_11670
NZ_PYKE01000160.1	Protein Homology	CDS	4645	5556	.	+	0	ID=cds-WP_135370285.1;Parent=gene-C9F05_RS11370;Dbxref=GenBank:WP_135370285.1;Name=WP_135370285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463363.1;locus_tag=C9F05_RS11370;product=STM4504/CBY_0614 family protein;protein_id=WP_135370285.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	5761	6222	.	+	.	ID=gene-C9F05_RS11375;Name=C9F05_RS11375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11375;old_locus_tag=C9F05_11675
NZ_PYKE01000160.1	Protein Homology	CDS	5761	6222	.	+	0	ID=cds-WP_001654330.1;Parent=gene-C9F05_RS11375;Dbxref=GenBank:WP_001654330.1;Name=WP_001654330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463364.1;locus_tag=C9F05_RS11375;product=DUF302 domain-containing protein;protein_id=WP_001654330.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	6219	6893	.	-	.	ID=gene-C9F05_RS11380;Name=C9F05_RS11380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11380;old_locus_tag=C9F05_11680
NZ_PYKE01000160.1	Protein Homology	CDS	6219	6893	.	-	0	ID=cds-WP_135370286.1;Parent=gene-C9F05_RS11380;Dbxref=GenBank:WP_135370286.1;Name=WP_135370286.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463365.1;locus_tag=C9F05_RS11380;product=dienelactone hydrolase family protein;protein_id=WP_135370286.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	7243	8016	.	+	.	ID=gene-C9F05_RS11385;Name=uxuR;gbkey=Gene;gene=uxuR;gene_biotype=protein_coding;locus_tag=C9F05_RS11385;old_locus_tag=C9F05_11690
NZ_PYKE01000160.1	Protein Homology	CDS	7243	8016	.	+	0	ID=cds-WP_000841654.1;Parent=gene-C9F05_RS11385;Dbxref=GenBank:WP_000841654.1;Name=WP_000841654.1;gbkey=CDS;gene=uxuR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463366.1;locus_tag=C9F05_RS11385;product=Uxu operon transcriptional regulator;protein_id=WP_000841654.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	8017	9030	.	-	.	ID=gene-C9F05_RS11390;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=C9F05_RS11390;old_locus_tag=C9F05_11695
NZ_PYKE01000160.1	Protein Homology	CDS	8017	9030	.	-	0	ID=cds-WP_001094611.1;Parent=gene-C9F05_RS11390;Dbxref=GenBank:WP_001094611.1;Name=WP_001094611.1;Ontology_term=GO:0006436,GO:0000166,GO:0004830,GO:0005524;gbkey=CDS;gene=trpS;go_function=nucleotide binding|0000166||IEA,tryptophan-tRNA ligase activity|0004830||IEA,ATP binding|0005524||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463367.1;locus_tag=C9F05_RS11390;product=tryptophan--tRNA ligase;protein_id=WP_001094611.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	9748	10278	.	+	.	ID=gene-C9F05_RS11395;Name=C9F05_RS11395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11395;old_locus_tag=C9F05_11700
NZ_PYKE01000160.1	Protein Homology	CDS	9748	10278	.	+	0	ID=cds-WP_000907671.1;Parent=gene-C9F05_RS11395;Dbxref=GenBank:WP_000907671.1;Name=WP_000907671.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463368.3;locus_tag=C9F05_RS11395;product=Hcp family type VI secretion system effector;protein_id=WP_000907671.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	10517	11251	.	+	.	ID=gene-C9F05_RS11400;Name=C9F05_RS11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11400;old_locus_tag=C9F05_11710
NZ_PYKE01000160.1	Protein Homology	CDS	10517	11251	.	+	0	ID=cds-WP_000683251.1;Parent=gene-C9F05_RS11400;Dbxref=GenBank:WP_000683251.1;Name=WP_000683251.1;Ontology_term=GO:0047661;gbkey=CDS;go_function=amino-acid racemase activity|0047661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463369.1;locus_tag=C9F05_RS11400;product=aspartate/glutamate racemase family protein;protein_id=WP_000683251.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	11257	12165	.	-	.	ID=gene-C9F05_RS11405;Name=hypT;gbkey=Gene;gene=hypT;gene_biotype=protein_coding;gene_synonym=qseD;locus_tag=C9F05_RS11405;old_locus_tag=C9F05_11715
NZ_PYKE01000160.1	Protein Homology	CDS	11257	12165	.	-	0	ID=cds-WP_000383509.1;Parent=gene-C9F05_RS11405;Dbxref=GenBank:WP_000383509.1;Name=WP_000383509.1;gbkey=CDS;gene=hypT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463370.1;locus_tag=C9F05_RS11405;product=hypochlorite stress DNA-binding transcriptional regulator HypT;protein_id=WP_000383509.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	12284	13456	.	-	.	ID=gene-C9F05_RS11410;Name=iadA;gbkey=Gene;gene=iadA;gene_biotype=protein_coding;locus_tag=C9F05_RS11410;old_locus_tag=C9F05_11720
NZ_PYKE01000160.1	Protein Homology	CDS	12284	13456	.	-	0	ID=cds-WP_001113052.1;Parent=gene-C9F05_RS11410;Dbxref=GenBank:WP_001113052.1;Name=WP_001113052.1;Ontology_term=GO:0008798;gbkey=CDS;gene=iadA;go_function=beta-aspartyl-peptidase activity|0008798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463371.1;locus_tag=C9F05_RS11410;product=beta-aspartyl-peptidase;protein_id=WP_001113052.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	13469	13930	.	-	.	ID=gene-C9F05_RS11415;Name=C9F05_RS11415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11415;old_locus_tag=C9F05_11725
NZ_PYKE01000160.1	Protein Homology	CDS	13469	13930	.	-	0	ID=cds-WP_000211979.1;Parent=gene-C9F05_RS11415;Dbxref=GenBank:WP_000211979.1;Name=WP_000211979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463372.1;locus_tag=C9F05_RS11415;product=YjiG family protein;protein_id=WP_000211979.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	13927	14598	.	-	.	ID=gene-C9F05_RS11420;Name=C9F05_RS11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11420;old_locus_tag=C9F05_11730
NZ_PYKE01000160.1	Protein Homology	CDS	13927	14598	.	-	0	ID=cds-WP_000068752.1;Parent=gene-C9F05_RS11420;Dbxref=GenBank:WP_000068752.1;Name=WP_000068752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418750.2;locus_tag=C9F05_RS11420;product=nucleoside recognition domain-containing protein;protein_id=WP_000068752.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	15470	16597	.	-	.	ID=gene-C9F05_RS11425;Name=C9F05_RS11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11425;old_locus_tag=C9F05_11740
NZ_PYKE01000160.1	Protein Homology	CDS	15470	16597	.	-	0	ID=cds-WP_255121305.1;Parent=gene-C9F05_RS11425;Dbxref=GenBank:WP_255121305.1;Name=WP_255121305.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014341265.1;locus_tag=C9F05_RS11425;product=MFS transporter;protein_id=WP_255121305.1;transl_table=11
NZ_PYKE01000160.1	RefSeq	gene	16506	16745	.	-	.	ID=gene-C9F05_RS23815;Name=C9F05_RS23815;end_range=16745,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23815;partial=true
NZ_PYKE01000160.1	GeneMarkS-2+	CDS	16506	16745	.	-	0	ID=cds-WP_255121306.1;Parent=gene-C9F05_RS23815;Dbxref=GenBank:WP_255121306.1;Name=WP_255121306.1;end_range=16745,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23815;partial=true;product=hypothetical protein;protein_id=WP_255121306.1;transl_table=11
##sequence-region NZ_PYKE01000267.1 1 16561
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000267.1	RefSeq	region	1	16561	.	+	.	ID=NZ_PYKE01000267.1:1..16561;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000267.1	RefSeq	gene	240	316	.	+	.	ID=gene-C9F05_RS17835;Name=C9F05_RS17835;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17835;old_locus_tag=C9F05_18345
NZ_PYKE01000267.1	tRNAscan-SE	tRNA	240	316	.	+	.	ID=rna-C9F05_RS17835;Parent=gene-C9F05_RS17835;anticodon=(pos:274..276);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17835;product=tRNA-Asp
NZ_PYKE01000267.1	tRNAscan-SE	exon	240	316	.	+	.	ID=exon-C9F05_RS17835-1;Parent=rna-C9F05_RS17835;anticodon=(pos:274..276);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17835;product=tRNA-Asp
NZ_PYKE01000267.1	RefSeq	gene	481	1284	.	+	.	ID=gene-C9F05_RS17840;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=protein_coding;locus_tag=C9F05_RS17840;old_locus_tag=C9F05_18350
NZ_PYKE01000267.1	Protein Homology	CDS	481	1284	.	+	0	ID=cds-WP_135370512.1;Parent=gene-C9F05_RS17840;Dbxref=GenBank:WP_135370512.1;Name=WP_135370512.1;Ontology_term=GO:0047834;gbkey=CDS;gene=dkgB;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459253.1;locus_tag=C9F05_RS17840;product=2%2C5-didehydrogluconate reductase DkgB;protein_id=WP_135370512.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	1305	2219	.	-	.	ID=gene-C9F05_RS17845;Name=yafC;gbkey=Gene;gene=yafC;gene_biotype=protein_coding;locus_tag=C9F05_RS17845;old_locus_tag=C9F05_18355
NZ_PYKE01000267.1	Protein Homology	CDS	1305	2219	.	-	0	ID=cds-WP_000648536.1;Parent=gene-C9F05_RS17845;Dbxref=GenBank:WP_000648536.1;Name=WP_000648536.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yafC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459254.1;locus_tag=C9F05_RS17845;product=DNA-binding transcriptional regulator YafC;protein_id=WP_000648536.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	2324	3499	.	+	.	ID=gene-C9F05_RS17850;Name=C9F05_RS17850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17850;old_locus_tag=C9F05_18360
NZ_PYKE01000267.1	Protein Homology	CDS	2324	3499	.	+	0	ID=cds-WP_023261587.1;Parent=gene-C9F05_RS17850;Dbxref=GenBank:WP_023261587.1;Name=WP_023261587.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459255.1;locus_tag=C9F05_RS17850;product=MFS transporter;protein_id=WP_023261587.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	3631	4431	.	+	.	ID=gene-C9F05_RS17855;Name=C9F05_RS17855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17855;old_locus_tag=C9F05_18365
NZ_PYKE01000267.1	Protein Homology	CDS	3631	4431	.	+	0	ID=cds-WP_001230970.1;Parent=gene-C9F05_RS17855;Dbxref=GenBank:WP_001230970.1;Name=WP_001230970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414745.1;locus_tag=C9F05_RS17855;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_001230970.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	4509	5279	.	+	.	ID=gene-C9F05_RS17860;Name=C9F05_RS17860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17860;old_locus_tag=C9F05_18370
NZ_PYKE01000267.1	Protein Homology	CDS	4509	5279	.	+	0	ID=cds-WP_000207222.1;Parent=gene-C9F05_RS17860;Dbxref=GenBank:WP_000207222.1;Name=WP_000207222.1;Ontology_term=GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459257.1;locus_tag=C9F05_RS17860;product=class I SAM-dependent methyltransferase;protein_id=WP_000207222.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	5335	6702	.	-	.	ID=gene-C9F05_RS17865;Name=mltD;gbkey=Gene;gene=mltD;gene_biotype=protein_coding;locus_tag=C9F05_RS17865;old_locus_tag=C9F05_18375
NZ_PYKE01000267.1	Protein Homology	CDS	5335	6702	.	-	0	ID=cds-WP_000644706.1;Parent=gene-C9F05_RS17865;Dbxref=GenBank:WP_000644706.1;Name=WP_000644706.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltD;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459258.1;locus_tag=C9F05_RS17865;product=murein transglycosylase D;protein_id=WP_000644706.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	6774	7529	.	-	.	ID=gene-C9F05_RS17870;Name=gloB;gbkey=Gene;gene=gloB;gene_biotype=protein_coding;locus_tag=C9F05_RS17870;old_locus_tag=C9F05_18380
NZ_PYKE01000267.1	Protein Homology	CDS	6774	7529	.	-	0	ID=cds-WP_001052774.1;Parent=gene-C9F05_RS17870;Dbxref=GenBank:WP_001052774.1;Name=WP_001052774.1;Ontology_term=GO:0019243,GO:0004416;gbkey=CDS;gene=gloB;go_function=hydroxyacylglutathione hydrolase activity|0004416||IEA;go_process=methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione|0019243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459259.1;locus_tag=C9F05_RS17870;product=hydroxyacylglutathione hydrolase;protein_id=WP_001052774.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	7564	8286	.	+	.	ID=gene-C9F05_RS17875;Name=C9F05_RS17875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17875;old_locus_tag=C9F05_18385
NZ_PYKE01000267.1	Protein Homology	CDS	7564	8286	.	+	0	ID=cds-WP_000801238.1;Parent=gene-C9F05_RS17875;Dbxref=GenBank:WP_000801238.1;Name=WP_000801238.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459260.1;locus_tag=C9F05_RS17875;product=class I SAM-dependent methyltransferase;protein_id=WP_000801238.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	8283	8750	.	-	.	ID=gene-C9F05_RS17880;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=C9F05_RS17880;old_locus_tag=C9F05_18390
NZ_PYKE01000267.1	Protein Homology	CDS	8283	8750	.	-	0	ID=cds-WP_000917872.1;Parent=gene-C9F05_RS17880;Dbxref=GenBank:WP_000917872.1;Name=WP_000917872.1;Ontology_term=GO:0003676,GO:0004523;gbkey=CDS;gene=rnhA;go_function=nucleic acid binding|0003676||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459261.1;locus_tag=C9F05_RS17880;product=ribonuclease HI;protein_id=WP_000917872.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	8814	9545	.	+	.	ID=gene-C9F05_RS17885;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=C9F05_RS17885;old_locus_tag=C9F05_18395
NZ_PYKE01000267.1	Protein Homology	CDS	8814	9545	.	+	0	ID=cds-WP_001670675.1;Parent=gene-C9F05_RS17885;Dbxref=GenBank:WP_001670675.1;Name=WP_001670675.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459262.1;locus_tag=C9F05_RS17885;product=DNA polymerase III subunit epsilon;protein_id=WP_001670675.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	9679	9755	.	+	.	ID=gene-C9F05_RS17890;Name=C9F05_RS17890;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17890;old_locus_tag=C9F05_18400
NZ_PYKE01000267.1	tRNAscan-SE	tRNA	9679	9755	.	+	.	ID=rna-C9F05_RS17890;Parent=gene-C9F05_RS17890;anticodon=(pos:9713..9715);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17890;product=tRNA-Asp
NZ_PYKE01000267.1	tRNAscan-SE	exon	9679	9755	.	+	.	ID=exon-C9F05_RS17890-1;Parent=rna-C9F05_RS17890;anticodon=(pos:9713..9715);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17890;product=tRNA-Asp
NZ_PYKE01000267.1	RefSeq	gene	10079	11134	.	-	.	ID=gene-C9F05_RS17895;Name=C9F05_RS17895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17895;old_locus_tag=C9F05_18405
NZ_PYKE01000267.1	Protein Homology	CDS	10079	11134	.	-	0	ID=cds-WP_000367619.1;Parent=gene-C9F05_RS17895;Dbxref=GenBank:WP_000367619.1;Name=WP_000367619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459263.1;locus_tag=C9F05_RS17895;product=ImpA family type VI secretion system protein;protein_id=WP_000367619.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	11145	12140	.	-	.	ID=gene-C9F05_RS17900;Name=tssG;gbkey=Gene;gene=tssG;gene_biotype=protein_coding;locus_tag=C9F05_RS17900;old_locus_tag=C9F05_18410
NZ_PYKE01000267.1	Protein Homology	CDS	11145	12140	.	-	0	ID=cds-WP_079984679.1;Parent=gene-C9F05_RS17900;Dbxref=GenBank:WP_079984679.1;Name=WP_079984679.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssG;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459264.1;locus_tag=C9F05_RS17900;product=type VI secretion system baseplate subunit TssG;protein_id=WP_079984679.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	12137	14020	.	-	.	ID=gene-C9F05_RS17905;Name=tssF;gbkey=Gene;gene=tssF;gene_biotype=protein_coding;locus_tag=C9F05_RS17905;old_locus_tag=C9F05_18415
NZ_PYKE01000267.1	Protein Homology	CDS	12137	14020	.	-	0	ID=cds-WP_000371506.1;Parent=gene-C9F05_RS17905;Dbxref=GenBank:WP_000371506.1;Name=WP_000371506.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssF;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459265.1;locus_tag=C9F05_RS17905;product=type VI secretion system baseplate subunit TssF;protein_id=WP_000371506.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	14036	14530	.	-	.	ID=gene-C9F05_RS17910;Name=tssE;gbkey=Gene;gene=tssE;gene_biotype=protein_coding;locus_tag=C9F05_RS17910;old_locus_tag=C9F05_18420
NZ_PYKE01000267.1	Protein Homology	CDS	14036	14530	.	-	0	ID=cds-WP_000108007.1;Parent=gene-C9F05_RS17910;Dbxref=GenBank:WP_000108007.1;Name=WP_000108007.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssE;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459266.1;locus_tag=C9F05_RS17910;product=type VI secretion system baseplate subunit TssE;protein_id=WP_000108007.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	14527	15351	.	-	.	ID=gene-C9F05_RS17915;Name=C9F05_RS17915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17915;old_locus_tag=C9F05_18425
NZ_PYKE01000267.1	Protein Homology	CDS	14527	15351	.	-	0	ID=cds-WP_135370513.1;Parent=gene-C9F05_RS17915;Dbxref=GenBank:WP_135370513.1;Name=WP_135370513.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459267.1;locus_tag=C9F05_RS17915;product=type VI secretion system accessory protein TagJ;protein_id=WP_135370513.1;transl_table=11
NZ_PYKE01000267.1	RefSeq	gene	15338	16240	.	-	.	ID=gene-C9F05_RS17920;Name=tagK;gbkey=Gene;gene=tagK;gene_biotype=protein_coding;locus_tag=C9F05_RS17920;old_locus_tag=C9F05_18430
NZ_PYKE01000267.1	Protein Homology	CDS	15338	16240	.	-	0	ID=cds-WP_001524811.1;Parent=gene-C9F05_RS17920;Dbxref=GenBank:WP_001524811.1;Name=WP_001524811.1;gbkey=CDS;gene=tagK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459268.1;locus_tag=C9F05_RS17920;product=type VI secretion system-associated protein TagK;protein_id=WP_001524811.1;transl_table=11
##sequence-region NZ_PYKE01000256.1 1 16336
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000256.1	RefSeq	region	1	16336	.	+	.	ID=NZ_PYKE01000256.1:1..16336;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000256.1	RefSeq	gene	1	514	.	+	.	ID=gene-C9F05_RS16660;Name=argO;gbkey=Gene;gene=argO;gene_biotype=protein_coding;locus_tag=C9F05_RS16660;old_locus_tag=C9F05_17145;partial=true;start_range=.,1
NZ_PYKE01000256.1	Protein Homology	CDS	1	514	.	+	1	ID=cds-WP_135370479.1;Parent=gene-C9F05_RS16660;Dbxref=GenBank:WP_135370479.1;Name=WP_135370479.1;Ontology_term=GO:1903826,GO:0061459,GO:0016020;gbkey=CDS;gene=argO;go_component=membrane|0016020||IEA;go_function=L-arginine transmembrane transporter activity|0061459||IEA;go_process=L-arginine transmembrane transport|1903826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461982.1;locus_tag=C9F05_RS16660;partial=true;product=arginine exporter ArgO;protein_id=WP_135370479.1;start_range=.,1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	608	1354	.	+	.	ID=gene-C9F05_RS16665;Name=C9F05_RS16665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16665;old_locus_tag=C9F05_17150
NZ_PYKE01000256.1	Protein Homology	CDS	608	1354	.	+	0	ID=cds-WP_000669854.1;Parent=gene-C9F05_RS16665;Dbxref=GenBank:WP_000669854.1;Name=WP_000669854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461981.1;locus_tag=C9F05_RS16665;product=oxidative stress defense protein;protein_id=WP_000669854.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	1620	2513	.	-	.	ID=gene-C9F05_RS16675;Name=argP;gbkey=Gene;gene=argP;gene_biotype=protein_coding;locus_tag=C9F05_RS16675;old_locus_tag=C9F05_17160
NZ_PYKE01000256.1	Protein Homology	CDS	1620	2513	.	-	0	ID=cds-WP_000828345.1;Parent=gene-C9F05_RS16675;Dbxref=GenBank:WP_000828345.1;Name=WP_000828345.1;gbkey=CDS;gene=argP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461980.1;locus_tag=C9F05_RS16675;product=DNA-binding transcriptional regulator ArgP;protein_id=WP_000828345.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	2667	3326	.	+	.	ID=gene-C9F05_RS16680;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=C9F05_RS16680;old_locus_tag=C9F05_17165
NZ_PYKE01000256.1	Protein Homology	CDS	2667	3326	.	+	0	ID=cds-WP_000189741.1;Parent=gene-C9F05_RS16680;Dbxref=GenBank:WP_000189741.1;Name=WP_000189741.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiA;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461979.1;locus_tag=C9F05_RS16680;product=ribose-5-phosphate isomerase RpiA;protein_id=WP_000189741.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	3593	4825	.	+	.	ID=gene-C9F05_RS16685;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=C9F05_RS16685;old_locus_tag=C9F05_17170
NZ_PYKE01000256.1	Protein Homology	CDS	3593	4825	.	+	0	ID=cds-WP_001151627.1;Parent=gene-C9F05_RS16685;Dbxref=GenBank:WP_001151627.1;Name=WP_001151627.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=serA;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461978.1;locus_tag=C9F05_RS16685;product=phosphoglycerate dehydrogenase;protein_id=WP_001151627.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	5206	5802	.	-	.	ID=gene-C9F05_RS16690;Name=C9F05_RS16690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16690;old_locus_tag=C9F05_17175
NZ_PYKE01000256.1	Protein Homology	CDS	5206	5802	.	-	0	ID=cds-WP_001519554.1;Parent=gene-C9F05_RS16690;Dbxref=GenBank:WP_001519554.1;Name=WP_001519554.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311809.4;locus_tag=C9F05_RS16690;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_001519554.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	5823	6006	.	-	.	ID=gene-C9F05_RS16695;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=C9F05_RS16695;old_locus_tag=C9F05_17180
NZ_PYKE01000256.1	cmsearch	ncRNA	5823	6006	.	-	.	ID=rna-C9F05_RS16695;Parent=gene-C9F05_RS16695;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS16695;product=6S RNA
NZ_PYKE01000256.1	cmsearch	exon	5823	6006	.	-	.	ID=exon-C9F05_RS16695-1;Parent=rna-C9F05_RS16695;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS16695;product=6S RNA
NZ_PYKE01000256.1	RefSeq	gene	6048	6377	.	-	.	ID=gene-C9F05_RS16700;Name=zapA;gbkey=Gene;gene=zapA;gene_biotype=protein_coding;locus_tag=C9F05_RS16700;old_locus_tag=C9F05_17185
NZ_PYKE01000256.1	Protein Homology	CDS	6048	6377	.	-	0	ID=cds-WP_001276011.1;Parent=gene-C9F05_RS16700;Dbxref=GenBank:WP_001276011.1;Name=WP_001276011.1;gbkey=CDS;gene=zapA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461976.1;locus_tag=C9F05_RS16700;product=cell division protein ZapA;protein_id=WP_001276011.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	6544	7122	.	+	.	ID=gene-C9F05_RS16705;Name=C9F05_RS16705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16705;old_locus_tag=C9F05_17195
NZ_PYKE01000256.1	Protein Homology	CDS	6544	7122	.	+	0	ID=cds-WP_000027236.1;Parent=gene-C9F05_RS16705;Dbxref=GenBank:WP_000027236.1;Name=WP_000027236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708672.2;locus_tag=C9F05_RS16705;product=YecA/YgfB family protein;protein_id=WP_000027236.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	7148	8464	.	+	.	ID=gene-C9F05_RS16710;Name=pepP;gbkey=Gene;gene=pepP;gene_biotype=protein_coding;locus_tag=C9F05_RS16710;old_locus_tag=C9F05_17200
NZ_PYKE01000256.1	Protein Homology	CDS	7148	8464	.	+	0	ID=cds-WP_001650619.1;Parent=gene-C9F05_RS16710;Dbxref=GenBank:WP_001650619.1;Name=WP_001650619.1;Ontology_term=GO:0070006;gbkey=CDS;gene=pepP;go_function=metalloaminopeptidase activity|0070006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461974.1;locus_tag=C9F05_RS16710;product=Xaa-Pro aminopeptidase;protein_id=WP_001650619.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	8461	9639	.	+	.	ID=gene-C9F05_RS16715;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;gene_synonym=visB;locus_tag=C9F05_RS16715;old_locus_tag=C9F05_17205
NZ_PYKE01000256.1	Protein Homology	CDS	8461	9639	.	+	0	ID=cds-WP_000111140.1;Parent=gene-C9F05_RS16715;Dbxref=GenBank:WP_000111140.1;Name=WP_000111140.1;Ontology_term=GO:0006744,GO:0008681,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiH;go_function=2-octaprenyl-6-methoxyphenol hydroxylase activity|0008681||IEA,oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461973.2;locus_tag=C9F05_RS16715;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_000111140.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	9765	10967	.	+	.	ID=gene-C9F05_RS16720;Name=ubiI;gbkey=Gene;gene=ubiI;gene_biotype=protein_coding;gene_synonym=visC;locus_tag=C9F05_RS16720;old_locus_tag=C9F05_17210
NZ_PYKE01000256.1	Protein Homology	CDS	9765	10967	.	+	0	ID=cds-WP_001192144.1;Parent=gene-C9F05_RS16720;Dbxref=GenBank:WP_001192144.1;Name=WP_001192144.1;Ontology_term=GO:0006744,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiI;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461972.1;locus_tag=C9F05_RS16720;product=FAD-dependent 2-octaprenylphenol hydroxylase;protein_id=WP_001192144.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	11422	12516	.	+	.	ID=gene-C9F05_RS16725;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=C9F05_RS16725;old_locus_tag=C9F05_17215
NZ_PYKE01000256.1	Protein Homology	CDS	11422	12516	.	+	0	ID=cds-WP_000068738.1;Parent=gene-C9F05_RS16725;Dbxref=GenBank:WP_000068738.1;Name=WP_000068738.1;Ontology_term=GO:0019464,GO:0004047,GO:0005737;gbkey=CDS;gene=gcvT;go_component=cytoplasm|0005737||IEA;go_function=aminomethyltransferase activity|0004047||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461971.1;locus_tag=C9F05_RS16725;product=glycine cleavage system aminomethyltransferase GcvT;protein_id=WP_000068738.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	12542	12931	.	+	.	ID=gene-C9F05_RS16730;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;locus_tag=C9F05_RS16730;old_locus_tag=C9F05_17220
NZ_PYKE01000256.1	Protein Homology	CDS	12542	12931	.	+	0	ID=cds-WP_001295377.1;Parent=gene-C9F05_RS16730;Dbxref=GenBank:WP_001295377.1;Name=WP_001295377.1;Ontology_term=GO:0019464,GO:0005960;gbkey=CDS;gene=gcvH;go_component=glycine cleavage complex|0005960||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123344.1;locus_tag=C9F05_RS16730;product=glycine cleavage system protein GcvH;protein_id=WP_001295377.1;transl_table=11
NZ_PYKE01000256.1	RefSeq	gene	13094	15967	.	+	.	ID=gene-C9F05_RS16735;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=C9F05_RS16735;old_locus_tag=C9F05_17225
NZ_PYKE01000256.1	Protein Homology	CDS	13094	15967	.	+	0	ID=cds-WP_000194964.1;Parent=gene-C9F05_RS16735;Dbxref=GenBank:WP_000194964.1;Name=WP_000194964.1;Ontology_term=GO:0019464,GO:0004375;gbkey=CDS;gene=gcvP;go_function=glycine dehydrogenase (decarboxylating) activity|0004375||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461969.1;locus_tag=C9F05_RS16735;product=aminomethyl-transferring glycine dehydrogenase;protein_id=WP_000194964.1;transl_table=11
##sequence-region NZ_PYKE01000329.1 1 57641
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000329.1	RefSeq	region	1	57641	.	+	.	ID=NZ_PYKE01000329.1:1..57641;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000329.1	RefSeq	gene	192	2954	.	+	.	ID=gene-C9F05_RS22255;Name=C9F05_RS22255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22255;old_locus_tag=C9F05_22840
NZ_PYKE01000329.1	Protein Homology	CDS	192	2954	.	+	0	ID=cds-WP_135370645.1;Parent=gene-C9F05_RS22255;Dbxref=GenBank:WP_135370645.1;Name=WP_135370645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460357.1;locus_tag=C9F05_RS22255;product=two component system sensor kinase;protein_id=WP_135370645.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	2985	3623	.	+	.	ID=gene-C9F05_RS22260;Name=C9F05_RS22260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22260;old_locus_tag=C9F05_22845
NZ_PYKE01000329.1	Protein Homology	CDS	2985	3623	.	+	0	ID=cds-WP_000666334.1;Parent=gene-C9F05_RS22260;Dbxref=GenBank:WP_000666334.1;Name=WP_000666334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460356.1;locus_tag=C9F05_RS22260;product=two component system response regulator;protein_id=WP_000666334.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	3802	4530	.	+	.	ID=gene-C9F05_RS22265;Name=C9F05_RS22265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22265;old_locus_tag=C9F05_22850
NZ_PYKE01000329.1	Protein Homology	CDS	3802	4530	.	+	0	ID=cds-WP_000122320.1;Parent=gene-C9F05_RS22265;Dbxref=GenBank:WP_000122320.1;Name=WP_000122320.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460355.1;locus_tag=C9F05_RS22265;product=MerR family transcriptional regulator;protein_id=WP_000122320.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	4702	5661	.	+	.	ID=gene-C9F05_RS22270;Name=mlrB;gbkey=Gene;gene=mlrB;gene_biotype=protein_coding;locus_tag=C9F05_RS22270;old_locus_tag=C9F05_22855
NZ_PYKE01000329.1	Protein Homology	CDS	4702	5661	.	+	0	ID=cds-WP_001060723.1;Parent=gene-C9F05_RS22270;Dbxref=GenBank:WP_001060723.1;Name=WP_001060723.1;gbkey=CDS;gene=mlrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460354.1;locus_tag=C9F05_RS22270;product=transcriptional regulator MlrB;protein_id=WP_001060723.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	5757	5969	.	-	.	ID=gene-C9F05_RS22275;Name=fumD;gbkey=Gene;gene=fumD;gene_biotype=protein_coding;locus_tag=C9F05_RS22275;old_locus_tag=C9F05_22860
NZ_PYKE01000329.1	Protein Homology	CDS	5757	5969	.	-	0	ID=cds-WP_000165779.1;Parent=gene-C9F05_RS22275;Dbxref=GenBank:WP_000165779.1;Name=WP_000165779.1;gbkey=CDS;gene=fumD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460353.1;locus_tag=C9F05_RS22275;product=fumarate hydratase FumD;protein_id=WP_000165779.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	6067	6687	.	-	.	ID=gene-C9F05_RS22280;Name=ttrR;gbkey=Gene;gene=ttrR;gene_biotype=protein_coding;locus_tag=C9F05_RS22280;old_locus_tag=C9F05_22865
NZ_PYKE01000329.1	Protein Homology	CDS	6067	6687	.	-	0	ID=cds-WP_000190927.1;Parent=gene-C9F05_RS22280;Dbxref=GenBank:WP_000190927.1;Name=WP_000190927.1;gbkey=CDS;gene=ttrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460352.3;locus_tag=C9F05_RS22280;product=tetrathionate respiration response regulator TtrR;protein_id=WP_000190927.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	6662	8440	.	-	.	ID=gene-C9F05_RS22285;Name=ttrS;gbkey=Gene;gene=ttrS;gene_biotype=protein_coding;locus_tag=C9F05_RS22285;old_locus_tag=C9F05_22870
NZ_PYKE01000329.1	Protein Homology	CDS	6662	8440	.	-	0	ID=cds-WP_080094943.1;Parent=gene-C9F05_RS22285;Dbxref=GenBank:WP_080094943.1;Name=WP_080094943.1;gbkey=CDS;gene=ttrS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460351.1;locus_tag=C9F05_RS22285;product=tetrathionate respiration histidine kinase TtrS;protein_id=WP_080094943.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	8622	9356	.	+	.	ID=gene-C9F05_RS22290;Name=ttrB;gbkey=Gene;gene=ttrB;gene_biotype=protein_coding;locus_tag=C9F05_RS22290;old_locus_tag=C9F05_22875
NZ_PYKE01000329.1	Protein Homology	CDS	8622	9356	.	+	0	ID=cds-WP_001523928.1;Parent=gene-C9F05_RS22290;Dbxref=GenBank:WP_001523928.1;Name=WP_001523928.1;gbkey=CDS;gene=ttrB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001518945.1;locus_tag=C9F05_RS22290;product=tetrathionate reductase subunit TtrB;protein_id=WP_001523928.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	9357	10379	.	+	.	ID=gene-C9F05_RS22295;Name=ttrC;gbkey=Gene;gene=ttrC;gene_biotype=protein_coding;locus_tag=C9F05_RS22295;old_locus_tag=C9F05_22880
NZ_PYKE01000329.1	Protein Homology	CDS	9357	10379	.	+	0	ID=cds-WP_000149760.1;Parent=gene-C9F05_RS22295;Dbxref=GenBank:WP_000149760.1;Name=WP_000149760.1;gbkey=CDS;gene=ttrC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460349.1;locus_tag=C9F05_RS22295;product=tetrathionate reductase subunit TtrC;protein_id=WP_000149760.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	10372	13434	.	+	.	ID=gene-C9F05_RS22300;Name=ttrA;gbkey=Gene;gene=ttrA;gene_biotype=protein_coding;locus_tag=C9F05_RS22300;old_locus_tag=C9F05_22885
NZ_PYKE01000329.1	Protein Homology	CDS	10372	13434	.	+	0	ID=cds-WP_135370646.1;Parent=gene-C9F05_RS22300;Dbxref=GenBank:WP_135370646.1;Name=WP_135370646.1;Ontology_term=GO:0016491,GO:0043546;gbkey=CDS;gene=ttrA;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460348.1;locus_tag=C9F05_RS22300;product=tetrathionate reductase subunit TtrA;protein_id=WP_135370646.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	13757	14983	.	+	.	ID=gene-C9F05_RS22305;Name=C9F05_RS22305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22305;old_locus_tag=C9F05_22890
NZ_PYKE01000329.1	Protein Homology	CDS	13757	14983	.	+	0	ID=cds-WP_000471822.1;Parent=gene-C9F05_RS22305;Dbxref=GenBank:WP_000471822.1;Name=WP_000471822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460347.1;locus_tag=C9F05_RS22305;product=PfkB family carbohydrate kinase;protein_id=WP_000471822.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	14995	15732	.	+	.	ID=gene-C9F05_RS22310;Name=C9F05_RS22310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22310;old_locus_tag=C9F05_22895
NZ_PYKE01000329.1	Protein Homology	CDS	14995	15732	.	+	0	ID=cds-WP_000697195.1;Parent=gene-C9F05_RS22310;Dbxref=GenBank:WP_000697195.1;Name=WP_000697195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460346.1;locus_tag=C9F05_RS22310;product=glutamine amidotransferase;protein_id=WP_000697195.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	15791	16684	.	+	.	ID=gene-C9F05_RS22315;Name=C9F05_RS22315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22315;old_locus_tag=C9F05_22900
NZ_PYKE01000329.1	Protein Homology	CDS	15791	16684	.	+	0	ID=cds-WP_023203446.1;Parent=gene-C9F05_RS22315;Dbxref=GenBank:WP_023203446.1;Name=WP_023203446.1;Ontology_term=GO:0006508,GO:0008233;gbkey=CDS;go_function=peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460345.1;locus_tag=C9F05_RS22315;product=proline iminopeptidase-family hydrolase;protein_id=WP_023203446.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	16706	18049	.	+	.	ID=gene-C9F05_RS22320;Name=C9F05_RS22320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22320;old_locus_tag=C9F05_22905
NZ_PYKE01000329.1	Protein Homology	CDS	16706	18049	.	+	0	ID=cds-WP_000756089.1;Parent=gene-C9F05_RS22320;Dbxref=GenBank:WP_000756089.1;Name=WP_000756089.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460344.1;locus_tag=C9F05_RS22320;product=APC family permease;protein_id=WP_000756089.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	18213	18443	.	+	.	ID=gene-C9F05_RS24210;Name=ynhH;gbkey=Gene;gene=ynhH;gene_biotype=protein_coding;locus_tag=C9F05_RS24210
NZ_PYKE01000329.1	Protein Homology	CDS	18213	18443	.	+	0	ID=cds-WP_418143684.1;Parent=gene-C9F05_RS24210;Dbxref=GenBank:WP_418143684.1;Name=WP_418143684.1;gbkey=CDS;gene=ynhH;inference=COORDINATES: protein motif:HMM:NF049534.1;locus_tag=C9F05_RS24210;product=protein YnhH;protein_id=WP_418143684.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	18451	19863	.	+	.	ID=gene-C9F05_RS22325;Name=pykF;gbkey=Gene;gene=pykF;gene_biotype=protein_coding;locus_tag=C9F05_RS22325;old_locus_tag=C9F05_22915
NZ_PYKE01000329.1	Protein Homology	CDS	18451	19863	.	+	0	ID=cds-WP_000751447.1;Parent=gene-C9F05_RS22325;Dbxref=GenBank:WP_000751447.1;Name=WP_000751447.1;Ontology_term=GO:0006096,GO:0004743;gbkey=CDS;gene=pykF;go_function=pyruvate kinase activity|0004743||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010346010.1;locus_tag=C9F05_RS22325;product=pyruvate kinase PykF;protein_id=WP_000751447.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	20174	20410	.	+	.	ID=gene-C9F05_RS22330;Name=lpp;gbkey=Gene;gene=lpp;gene_biotype=protein_coding;locus_tag=C9F05_RS22330;old_locus_tag=C9F05_22920
NZ_PYKE01000329.1	Protein Homology	CDS	20174	20410	.	+	0	ID=cds-WP_001082307.1;Parent=gene-C9F05_RS22330;Dbxref=GenBank:WP_001082307.1;Name=WP_001082307.1;gbkey=CDS;gene=lpp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460342.1;locus_tag=C9F05_RS22330;product=murein lipoprotein Lpp;protein_id=WP_001082307.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	20493	20732	.	+	.	ID=gene-C9F05_RS22335;Name=C9F05_RS22335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22335;old_locus_tag=C9F05_22925
NZ_PYKE01000329.1	Protein Homology	CDS	20493	20732	.	+	0	ID=cds-WP_080198195.1;Parent=gene-C9F05_RS22335;Dbxref=GenBank:WP_080198195.1;Name=WP_080198195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460341.1;locus_tag=C9F05_RS22335;product=major outer membrane lipoprotein;protein_id=WP_080198195.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	20799	21800	.	-	.	ID=gene-C9F05_RS22340;Name=ldtE;gbkey=Gene;gene=ldtE;gene_biotype=protein_coding;locus_tag=C9F05_RS22340;old_locus_tag=C9F05_22930
NZ_PYKE01000329.1	Protein Homology	CDS	20799	21800	.	-	0	ID=cds-WP_135370647.1;Parent=gene-C9F05_RS22340;Dbxref=GenBank:WP_135370647.1;Name=WP_135370647.1;Ontology_term=GO:0009252,GO:0018104,GO:0016757,GO:0071972;gbkey=CDS;gene=ldtE;go_function=glycosyltransferase activity|0016757||IEA,peptidoglycan L%2CD-transpeptidase activity|0071972||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,peptidoglycan-protein cross-linking|0018104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460340.1;locus_tag=C9F05_RS22340;product=L%2CD-transpeptidase LdtE;protein_id=WP_135370647.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	21955	22371	.	-	.	ID=gene-C9F05_RS22345;Name=sufE;gbkey=Gene;gene=sufE;gene_biotype=protein_coding;locus_tag=C9F05_RS22345;old_locus_tag=C9F05_22935
NZ_PYKE01000329.1	Protein Homology	CDS	21955	22371	.	-	0	ID=cds-WP_135370648.1;Parent=gene-C9F05_RS22345;Dbxref=GenBank:WP_135370648.1;Name=WP_135370648.1;gbkey=CDS;gene=sufE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460339.1;locus_tag=C9F05_RS22345;product=cysteine desulfuration protein SufE;protein_id=WP_135370648.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	22384	23604	.	-	.	ID=gene-C9F05_RS22350;Name=sufS;gbkey=Gene;gene=sufS;gene_biotype=protein_coding;locus_tag=C9F05_RS22350;old_locus_tag=C9F05_22940
NZ_PYKE01000329.1	Protein Homology	CDS	22384	23604	.	-	0	ID=cds-WP_000143859.1;Parent=gene-C9F05_RS22350;Dbxref=GenBank:WP_000143859.1;Name=WP_000143859.1;Ontology_term=GO:0006534,GO:0030170,GO:0031071;gbkey=CDS;gene=sufS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=cysteine metabolic process|0006534||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460338.1;locus_tag=C9F05_RS22350;product=cysteine desulfurase SufS;protein_id=WP_000143859.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	23601	24872	.	-	.	ID=gene-C9F05_RS22355;Name=sufD;gbkey=Gene;gene=sufD;gene_biotype=protein_coding;locus_tag=C9F05_RS22355;old_locus_tag=C9F05_22945
NZ_PYKE01000329.1	Protein Homology	CDS	23601	24872	.	-	0	ID=cds-WP_135370649.1;Parent=gene-C9F05_RS22355;Dbxref=GenBank:WP_135370649.1;Name=WP_135370649.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufD;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460337.1;locus_tag=C9F05_RS22355;product=Fe-S cluster assembly protein SufD;protein_id=WP_135370649.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	24847	25593	.	-	.	ID=gene-C9F05_RS22360;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=C9F05_RS22360;old_locus_tag=C9F05_22950
NZ_PYKE01000329.1	Protein Homology	CDS	24847	25593	.	-	0	ID=cds-WP_000948902.1;Parent=gene-C9F05_RS22360;Dbxref=GenBank:WP_000948902.1;Name=WP_000948902.1;Ontology_term=GO:0005524;gbkey=CDS;gene=sufC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008500629.1;locus_tag=C9F05_RS22360;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_000948902.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	25610	27097	.	-	.	ID=gene-C9F05_RS22365;Name=sufB;gbkey=Gene;gene=sufB;gene_biotype=protein_coding;locus_tag=C9F05_RS22365;old_locus_tag=C9F05_22955
NZ_PYKE01000329.1	Protein Homology	CDS	25610	27097	.	-	0	ID=cds-WP_135370650.1;Parent=gene-C9F05_RS22365;Dbxref=GenBank:WP_135370650.1;Name=WP_135370650.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufB;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460335.1;locus_tag=C9F05_RS22365;product=Fe-S cluster assembly protein SufB;protein_id=WP_135370650.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	27106	27474	.	-	.	ID=gene-C9F05_RS22370;Name=sufA;gbkey=Gene;gene=sufA;gene_biotype=protein_coding;locus_tag=C9F05_RS22370;old_locus_tag=C9F05_22960
NZ_PYKE01000329.1	Protein Homology	CDS	27106	27474	.	-	0	ID=cds-WP_000418973.1;Parent=gene-C9F05_RS22370;Dbxref=GenBank:WP_000418973.1;Name=WP_000418973.1;gbkey=CDS;gene=sufA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460334.1;locus_tag=C9F05_RS22370;product=Fe-S cluster assembly scaffold SufA;protein_id=WP_000418973.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	27901	29247	.	+	.	ID=gene-C9F05_RS22375;Name=C9F05_RS22375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22375;old_locus_tag=C9F05_22965
NZ_PYKE01000329.1	Protein Homology	CDS	27901	29247	.	+	0	ID=cds-WP_135370651.1;Parent=gene-C9F05_RS22375;Dbxref=GenBank:WP_135370651.1;Name=WP_135370651.1;Ontology_term=GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460333.1;locus_tag=C9F05_RS22375;product=L-cystine transporter;protein_id=WP_135370651.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	29535	29723	.	-	.	ID=gene-C9F05_RS22380;Name=C9F05_RS22380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22380;old_locus_tag=C9F05_22970
NZ_PYKE01000329.1	Protein Homology	CDS	29535	29723	.	-	0	ID=cds-WP_001537749.1;Parent=gene-C9F05_RS22380;Dbxref=GenBank:WP_001537749.1;Name=WP_001537749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416200.2;locus_tag=C9F05_RS22380;product=YdiH family protein;protein_id=WP_001537749.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	29822	30232	.	-	.	ID=gene-C9F05_RS22385;Name=menI;gbkey=Gene;gene=menI;gene_biotype=protein_coding;locus_tag=C9F05_RS22385;old_locus_tag=C9F05_22975
NZ_PYKE01000329.1	Protein Homology	CDS	29822	30232	.	-	0	ID=cds-WP_000637926.1;Parent=gene-C9F05_RS22385;Dbxref=GenBank:WP_000637926.1;Name=WP_000637926.1;gbkey=CDS;gene=menI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460331.1;locus_tag=C9F05_RS22385;product=1%2C4-dihydroxy-2-naphthoyl-CoA hydrolase;protein_id=WP_000637926.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	30229	33285	.	-	.	ID=gene-C9F05_RS22390;Name=ydiJ;gbkey=Gene;gene=ydiJ;gene_biotype=protein_coding;locus_tag=C9F05_RS22390;old_locus_tag=C9F05_22980
NZ_PYKE01000329.1	Protein Homology	CDS	30229	33285	.	-	0	ID=cds-WP_135370652.1;Parent=gene-C9F05_RS22390;Dbxref=GenBank:WP_135370652.1;Name=WP_135370652.1;Ontology_term=GO:1903457,GO:0008720,GO:0046872;gbkey=CDS;gene=ydiJ;go_function=D-lactate dehydrogenase (NAD+) activity|0008720||IEA,metal ion binding|0046872||IEA;go_process=lactate catabolic process|1903457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460330.1;locus_tag=C9F05_RS22390;product=D-2-hydroxyglutarate dehydrogenase YdiJ;protein_id=WP_135370652.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	33550	34668	.	+	.	ID=gene-C9F05_RS22395;Name=ydiK;gbkey=Gene;gene=ydiK;gene_biotype=protein_coding;locus_tag=C9F05_RS22395;old_locus_tag=C9F05_22985
NZ_PYKE01000329.1	Protein Homology	CDS	33550	34668	.	+	0	ID=cds-WP_058109762.1;Parent=gene-C9F05_RS22395;Dbxref=GenBank:WP_058109762.1;Name=WP_058109762.1;gbkey=CDS;gene=ydiK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460329.1;locus_tag=C9F05_RS22395;product=AI-2E family transporter YdiK;protein_id=WP_058109762.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	34851	34958	.	+	.	ID=gene-C9F05_RS22400;Name=rprA;gbkey=Gene;gene=rprA;gene_biotype=antisense_RNA;locus_tag=C9F05_RS22400;old_locus_tag=C9F05_22990
NZ_PYKE01000329.1	cmsearch	antisense_RNA	34851	34958	.	+	.	ID=rna-C9F05_RS22400;Parent=gene-C9F05_RS22400;Dbxref=RFAM:RF00034;gbkey=ncRNA;gene=rprA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS22400;product=antisense sRNA RprA
NZ_PYKE01000329.1	cmsearch	exon	34851	34958	.	+	.	ID=exon-C9F05_RS22400-1;Parent=rna-C9F05_RS22400;Dbxref=RFAM:RF00034;gbkey=ncRNA;gene=rprA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS22400;product=antisense sRNA RprA
NZ_PYKE01000329.1	RefSeq	gene	35126	35485	.	+	.	ID=gene-C9F05_RS22405;Name=C9F05_RS22405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22405;old_locus_tag=C9F05_22995
NZ_PYKE01000329.1	Protein Homology	CDS	35126	35485	.	+	0	ID=cds-WP_000980452.1;Parent=gene-C9F05_RS22405;Dbxref=GenBank:WP_000980452.1;Name=WP_000980452.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460328.1;locus_tag=C9F05_RS22405;product=YdiL family protein;protein_id=WP_000980452.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	35626	36837	.	+	.	ID=gene-C9F05_RS22410;Name=C9F05_RS22410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22410;old_locus_tag=C9F05_23000
NZ_PYKE01000329.1	Protein Homology	CDS	35626	36837	.	+	0	ID=cds-WP_000797667.1;Parent=gene-C9F05_RS22410;Dbxref=GenBank:WP_000797667.1;Name=WP_000797667.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460327.1;locus_tag=C9F05_RS22410;product=MFS transporter;protein_id=WP_000797667.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	37350	38585	.	+	.	ID=gene-C9F05_RS22415;Name=C9F05_RS22415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22415;old_locus_tag=C9F05_23010
NZ_PYKE01000329.1	Protein Homology	CDS	37350	38585	.	+	0	ID=cds-WP_000081209.1;Parent=gene-C9F05_RS22415;Dbxref=GenBank:WP_000081209.1;Name=WP_000081209.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460326.1;locus_tag=C9F05_RS22415;product=MFS transporter;protein_id=WP_000081209.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	38652	39518	.	+	.	ID=gene-C9F05_RS22420;Name=ydiB;gbkey=Gene;gene=ydiB;gene_biotype=protein_coding;locus_tag=C9F05_RS22420;old_locus_tag=C9F05_23015
NZ_PYKE01000329.1	Protein Homology	CDS	38652	39518	.	+	0	ID=cds-WP_000383488.1;Parent=gene-C9F05_RS22420;Dbxref=GenBank:WP_000383488.1;Name=WP_000383488.1;gbkey=CDS;gene=ydiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460325.1;locus_tag=C9F05_RS22420;product=quinate/shikimate dehydrogenase;protein_id=WP_000383488.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	39563	40321	.	+	.	ID=gene-C9F05_RS22425;Name=aroD;gbkey=Gene;gene=aroD;gene_biotype=protein_coding;locus_tag=C9F05_RS22425;old_locus_tag=C9F05_23020
NZ_PYKE01000329.1	Protein Homology	CDS	39563	40321	.	+	0	ID=cds-WP_000860221.1;Parent=gene-C9F05_RS22425;Dbxref=GenBank:WP_000860221.1;Name=WP_000860221.1;Ontology_term=GO:0009423,GO:0003855;gbkey=CDS;gene=aroD;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460324.1;locus_tag=C9F05_RS22425;product=type I 3-dehydroquinate dehydratase;protein_id=WP_000860221.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	40475	42070	.	+	.	ID=gene-C9F05_RS22430;Name=C9F05_RS22430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22430;old_locus_tag=C9F05_23025
NZ_PYKE01000329.1	Protein Homology	CDS	40475	42070	.	+	0	ID=cds-WP_024798032.1;Parent=gene-C9F05_RS22430;Dbxref=GenBank:WP_024798032.1;Name=WP_024798032.1;Ontology_term=GO:0008410,GO:0016782;gbkey=CDS;go_function=CoA-transferase activity|0008410||IEA,transferase activity%2C transferring sulphur-containing groups|0016782||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416209.1;locus_tag=C9F05_RS22430;product=acyl CoA:acetate/3-ketoacid CoA transferase;protein_id=WP_024798032.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	42084	43235	.	+	.	ID=gene-C9F05_RS22435;Name=C9F05_RS22435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22435;old_locus_tag=C9F05_23030
NZ_PYKE01000329.1	Protein Homology	CDS	42084	43235	.	+	0	ID=cds-WP_000347819.1;Parent=gene-C9F05_RS22435;Dbxref=GenBank:WP_000347819.1;Name=WP_000347819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460322.1;locus_tag=C9F05_RS22435;product=acyl-CoA dehydrogenase;protein_id=WP_000347819.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	43311	44201	.	-	.	ID=gene-C9F05_RS22440;Name=C9F05_RS22440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22440;old_locus_tag=C9F05_23035
NZ_PYKE01000329.1	Protein Homology	CDS	43311	44201	.	-	0	ID=cds-WP_000284832.1;Parent=gene-C9F05_RS22440;Dbxref=GenBank:WP_000284832.1;Name=WP_000284832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460321.1;locus_tag=C9F05_RS22440;product=AraC family transcriptional regulator;protein_id=WP_000284832.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	44664	45428	.	+	.	ID=gene-C9F05_RS22445;Name=C9F05_RS22445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22445;old_locus_tag=C9F05_23040
NZ_PYKE01000329.1	Protein Homology	CDS	44664	45428	.	+	0	ID=cds-WP_000692096.1;Parent=gene-C9F05_RS22445;Dbxref=GenBank:WP_000692096.1;Name=WP_000692096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460320.1;locus_tag=C9F05_RS22445;product=electron transfer flavoprotein;protein_id=WP_000692096.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	45450	46385	.	+	.	ID=gene-C9F05_RS22450;Name=C9F05_RS22450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22450;old_locus_tag=C9F05_23045
NZ_PYKE01000329.1	Protein Homology	CDS	45450	46385	.	+	0	ID=cds-WP_045900126.1;Parent=gene-C9F05_RS22450;Dbxref=GenBank:WP_045900126.1;Name=WP_045900126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460319.1;locus_tag=C9F05_RS22450;product=electron transfer flavoprotein subunit alpha;protein_id=WP_045900126.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	46442	47728	.	+	.	ID=gene-C9F05_RS22455;Name=C9F05_RS22455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22455;old_locus_tag=C9F05_23050
NZ_PYKE01000329.1	Protein Homology	CDS	46442	47728	.	+	0	ID=cds-WP_001278555.1;Parent=gene-C9F05_RS22455;Dbxref=GenBank:WP_001278555.1;Name=WP_001278555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460318.1;locus_tag=C9F05_RS22455;product=FAD-dependent oxidoreductase;protein_id=WP_001278555.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	47725	48018	.	+	.	ID=gene-C9F05_RS22460;Name=C9F05_RS22460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22460;old_locus_tag=C9F05_23055
NZ_PYKE01000329.1	Protein Homology	CDS	47725	48018	.	+	0	ID=cds-WP_000093362.1;Parent=gene-C9F05_RS22460;Dbxref=GenBank:WP_000093362.1;Name=WP_000093362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460317.1;locus_tag=C9F05_RS22460;product=ferredoxin family protein;protein_id=WP_000093362.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	48256	49896	.	+	.	ID=gene-C9F05_RS22465;Name=fadK;gbkey=Gene;gene=fadK;gene_biotype=protein_coding;locus_tag=C9F05_RS22465;old_locus_tag=C9F05_23060
NZ_PYKE01000329.1	Protein Homology	CDS	48256	49896	.	+	0	ID=cds-WP_135370653.1;Parent=gene-C9F05_RS22465;Dbxref=GenBank:WP_135370653.1;Name=WP_135370653.1;gbkey=CDS;gene=fadK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460316.1;locus_tag=C9F05_RS22465;product=medium-chain fatty-acid--CoA ligase;protein_id=WP_135370653.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	49938	52316	.	-	.	ID=gene-C9F05_RS22470;Name=ppsA;gbkey=Gene;gene=ppsA;gene_biotype=protein_coding;locus_tag=C9F05_RS22470;old_locus_tag=C9F05_23065
NZ_PYKE01000329.1	Protein Homology	CDS	49938	52316	.	-	0	ID=cds-WP_135370654.1;Parent=gene-C9F05_RS22470;Dbxref=GenBank:WP_135370654.1;Name=WP_135370654.1;Ontology_term=GO:0006090,GO:0016310,GO:0005524,GO:0008986,GO:0016772;gbkey=CDS;gene=ppsA;go_function=ATP binding|0005524||IEA,pyruvate%2C water dikinase activity|0008986||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=pyruvate metabolic process|0006090||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460315.1;locus_tag=C9F05_RS22470;product=phosphoenolpyruvate synthase;protein_id=WP_135370654.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	52653	53486	.	+	.	ID=gene-C9F05_RS22475;Name=ppsR;gbkey=Gene;gene=ppsR;gene_biotype=protein_coding;locus_tag=C9F05_RS22475;old_locus_tag=C9F05_23070
NZ_PYKE01000329.1	Protein Homology	CDS	52653	53486	.	+	0	ID=cds-WP_000370992.1;Parent=gene-C9F05_RS22475;Dbxref=GenBank:WP_000370992.1;Name=WP_000370992.1;Ontology_term=GO:0004674,GO:0005524,GO:0016776,GO:0043531;gbkey=CDS;gene=ppsR;go_function=protein serine/threonine kinase activity|0004674||IEA,ATP binding|0005524||IEA,phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA,ADP binding|0043531||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460314.1;locus_tag=C9F05_RS22475;product=posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR;protein_id=WP_000370992.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	53642	54688	.	+	.	ID=gene-C9F05_RS22480;Name=aroH;gbkey=Gene;gene=aroH;gene_biotype=protein_coding;locus_tag=C9F05_RS22480;old_locus_tag=C9F05_23075
NZ_PYKE01000329.1	Protein Homology	CDS	53642	54688	.	+	0	ID=cds-WP_001082196.1;Parent=gene-C9F05_RS22480;Dbxref=GenBank:WP_001082196.1;Name=WP_001082196.1;gbkey=CDS;gene=aroH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460313.1;locus_tag=C9F05_RS22480;product=3-deoxy-7-phosphoheptulonate synthase AroH;protein_id=WP_001082196.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	54845	55036	.	+	.	ID=gene-C9F05_RS22485;Name=hemP;gbkey=Gene;gene=hemP;gene_biotype=protein_coding;locus_tag=C9F05_RS22485;old_locus_tag=C9F05_23080
NZ_PYKE01000329.1	Protein Homology	CDS	54845	55036	.	+	0	ID=cds-WP_000089118.1;Parent=gene-C9F05_RS22485;Dbxref=GenBank:WP_000089118.1;Name=WP_000089118.1;gbkey=CDS;gene=hemP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460312.1;locus_tag=C9F05_RS22485;product=hemin uptake protein HemP;protein_id=WP_000089118.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	55071	56513	.	-	.	ID=gene-C9F05_RS22490;Name=selO;gbkey=Gene;gene=selO;gene_biotype=protein_coding;locus_tag=C9F05_RS22490;old_locus_tag=C9F05_23085
NZ_PYKE01000329.1	Protein Homology	CDS	55071	56513	.	-	0	ID=cds-WP_023194181.1;Parent=gene-C9F05_RS22490;Dbxref=GenBank:WP_023194181.1;Name=WP_023194181.1;Ontology_term=GO:0018117,GO:0005524,GO:0070733;gbkey=CDS;gene=selO;go_function=ATP binding|0005524||IEA,AMPylase activity|0070733||IEA;go_process=protein adenylylation|0018117||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460311.1;locus_tag=C9F05_RS22490;product=protein adenylyltransferase SelO;protein_id=WP_023194181.1;transl_table=11
NZ_PYKE01000329.1	RefSeq	gene	56575	57285	.	-	.	ID=gene-C9F05_RS22495;Name=ydiV;gbkey=Gene;gene=ydiV;gene_biotype=protein_coding;locus_tag=C9F05_RS22495;old_locus_tag=C9F05_23090
NZ_PYKE01000329.1	Protein Homology	CDS	56575	57285	.	-	0	ID=cds-WP_135370655.1;Parent=gene-C9F05_RS22495;Dbxref=GenBank:WP_135370655.1;Name=WP_135370655.1;gbkey=CDS;gene=ydiV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460310.1;locus_tag=C9F05_RS22495;product=anti-FlhDC factor YdiV;protein_id=WP_135370655.1;transl_table=11
##sequence-region NZ_PYKE01000054.1 1 361
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000054.1	RefSeq	region	1	361	.	+	.	ID=NZ_PYKE01000054.1:1..361;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000054.1	RefSeq	gene	1	233	.	+	.	ID=gene-C9F05_RS03315;Name=C9F05_RS03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03315;old_locus_tag=C9F05_03370;partial=true;start_range=.,1
NZ_PYKE01000054.1	Protein Homology	CDS	1	233	.	+	2	ID=cds-WP_255121299.1;Parent=gene-C9F05_RS03315;Dbxref=GenBank:WP_255121299.1;Name=WP_255121299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000163274.1;locus_tag=C9F05_RS03315;partial=true;product=zincin-like metallopeptidase domain-containing protein;protein_id=WP_255121299.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000314.1 1 16198
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000314.1	RefSeq	region	1	16198	.	+	.	ID=NZ_PYKE01000314.1:1..16198;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000314.1	RefSeq	gene	88	789	.	-	.	ID=gene-C9F05_RS21405;Name=fre;gbkey=Gene;gene=fre;gene_biotype=protein_coding;locus_tag=C9F05_RS21405;old_locus_tag=C9F05_21995
NZ_PYKE01000314.1	Protein Homology	CDS	88	789	.	-	0	ID=cds-WP_000209838.1;Parent=gene-C9F05_RS21405;Dbxref=GenBank:WP_000209838.1;Name=WP_000209838.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fre;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462864.1;locus_tag=C9F05_RS21405;product=NAD(P)H-flavin reductase;protein_id=WP_000209838.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	875	2353	.	-	.	ID=gene-C9F05_RS21410;Name=ubiD;gbkey=Gene;gene=ubiD;gene_biotype=protein_coding;locus_tag=C9F05_RS21410;old_locus_tag=C9F05_22000
NZ_PYKE01000314.1	Protein Homology	CDS	875	2353	.	-	0	ID=cds-WP_000339764.1;Parent=gene-C9F05_RS21410;Dbxref=GenBank:WP_000339764.1;Name=WP_000339764.1;Ontology_term=GO:0016831;gbkey=CDS;gene=ubiD;go_function=carboxy-lyase activity|0016831||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462863.1;locus_tag=C9F05_RS21410;product=4-hydroxy-3-polyprenylbenzoate decarboxylase;protein_id=WP_000339764.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	2539	3027	.	+	.	ID=gene-C9F05_RS21415;Name=rfaH;gbkey=Gene;gene=rfaH;gene_biotype=protein_coding;locus_tag=C9F05_RS21415;old_locus_tag=C9F05_22005
NZ_PYKE01000314.1	Protein Homology	CDS	2539	3027	.	+	0	ID=cds-WP_001192410.1;Parent=gene-C9F05_RS21415;Dbxref=GenBank:WP_001192410.1;Name=WP_001192410.1;Ontology_term=GO:0006355;gbkey=CDS;gene=rfaH;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462862.1;locus_tag=C9F05_RS21415;product=transcription/translation regulatory transformer protein RfaH;protein_id=WP_001192410.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	3035	3817	.	-	.	ID=gene-C9F05_RS21420;Name=tatD;gbkey=Gene;gene=tatD;gene_biotype=protein_coding;locus_tag=C9F05_RS21420;old_locus_tag=C9F05_22010
NZ_PYKE01000314.1	Protein Homology	CDS	3035	3817	.	-	0	ID=cds-WP_000459637.1;Parent=gene-C9F05_RS21420;Dbxref=GenBank:WP_000459637.1;Name=WP_000459637.1;Ontology_term=GO:0008408;gbkey=CDS;gene=tatD;go_function=3'-5' exonuclease activity|0008408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462861.3;locus_tag=C9F05_RS21420;product=3'-5' ssDNA/RNA exonuclease TatD;protein_id=WP_000459637.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	3859	4638	.	-	.	ID=gene-C9F05_RS21425;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=C9F05_RS21425;old_locus_tag=C9F05_22015
NZ_PYKE01000314.1	Protein Homology	CDS	3859	4638	.	-	0	ID=cds-WP_000257554.1;Parent=gene-C9F05_RS21425;Dbxref=GenBank:WP_000257554.1;Name=WP_000257554.1;gbkey=CDS;gene=tatC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462860.1;locus_tag=C9F05_RS21425;product=Sec-independent protein translocase subunit TatC;protein_id=WP_000257554.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	4641	5189	.	-	.	ID=gene-C9F05_RS21430;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=C9F05_RS21430;old_locus_tag=C9F05_22020
NZ_PYKE01000314.1	Protein Homology	CDS	4641	5189	.	-	0	ID=cds-WP_000459612.1;Parent=gene-C9F05_RS21430;Dbxref=GenBank:WP_000459612.1;Name=WP_000459612.1;Ontology_term=GO:0015628,GO:0008320,GO:0016020;gbkey=CDS;gene=tatB;go_component=membrane|0016020||IEA;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462859.1;locus_tag=C9F05_RS21430;product=Sec-independent protein translocase protein TatB;protein_id=WP_000459612.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	5193	5447	.	-	.	ID=gene-C9F05_RS21435;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=C9F05_RS21435;old_locus_tag=C9F05_22025
NZ_PYKE01000314.1	Protein Homology	CDS	5193	5447	.	-	0	ID=cds-WP_000508972.1;Parent=gene-C9F05_RS21435;Dbxref=GenBank:WP_000508972.1;Name=WP_000508972.1;gbkey=CDS;gene=tatA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462858.1;locus_tag=C9F05_RS21435;product=Sec-independent protein translocase subunit TatA;protein_id=WP_000508972.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	5653	7293	.	-	.	ID=gene-C9F05_RS21440;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=C9F05_RS21440;old_locus_tag=C9F05_22030
NZ_PYKE01000314.1	Protein Homology	CDS	5653	7293	.	-	0	ID=cds-WP_000187559.1;Parent=gene-C9F05_RS21440;Dbxref=GenBank:WP_000187559.1;Name=WP_000187559.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiB;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462857.1;locus_tag=C9F05_RS21440;product=ubiquinone biosynthesis regulatory protein kinase UbiB;protein_id=WP_000187559.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	7290	7895	.	-	.	ID=gene-C9F05_RS21445;Name=ubiJ;gbkey=Gene;gene=ubiJ;gene_biotype=protein_coding;locus_tag=C9F05_RS21445;old_locus_tag=C9F05_22035
NZ_PYKE01000314.1	Protein Homology	CDS	7290	7895	.	-	0	ID=cds-WP_001116090.1;Parent=gene-C9F05_RS21445;Dbxref=GenBank:WP_001116090.1;Name=WP_001116090.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiJ;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462856.1;locus_tag=C9F05_RS21445;product=ubiquinone biosynthesis protein UbiJ;protein_id=WP_001116090.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	7905	8660	.	-	.	ID=gene-C9F05_RS21450;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=C9F05_RS21450;old_locus_tag=C9F05_22040
NZ_PYKE01000314.1	Protein Homology	CDS	7905	8660	.	-	0	ID=cds-WP_000229009.1;Parent=gene-C9F05_RS21450;Dbxref=GenBank:WP_000229009.1;Name=WP_000229009.1;Ontology_term=GO:0008168;gbkey=CDS;gene=ubiE;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462855.1;locus_tag=C9F05_RS21450;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase UbiE;protein_id=WP_000229009.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	8756	10186	.	-	.	ID=gene-C9F05_RS21455;Name=rmuC;gbkey=Gene;gene=rmuC;gene_biotype=protein_coding;locus_tag=C9F05_RS21455;old_locus_tag=C9F05_22045
NZ_PYKE01000314.1	Protein Homology	CDS	8756	10186	.	-	0	ID=cds-WP_000355562.1;Parent=gene-C9F05_RS21455;Dbxref=GenBank:WP_000355562.1;Name=WP_000355562.1;gbkey=CDS;gene=rmuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462854.1;locus_tag=C9F05_RS21455;product=DNA recombination protein RmuC;protein_id=WP_000355562.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	10326	11087	.	-	.	ID=gene-C9F05_RS21460;Name=udp;gbkey=Gene;gene=udp;gene_biotype=protein_coding;locus_tag=C9F05_RS21460;old_locus_tag=C9F05_22050
NZ_PYKE01000314.1	Protein Homology	CDS	10326	11087	.	-	0	ID=cds-WP_000045169.1;Parent=gene-C9F05_RS21460;Dbxref=GenBank:WP_000045169.1;Name=WP_000045169.1;Ontology_term=GO:0009116,GO:0016763;gbkey=CDS;gene=udp;go_function=pentosyltransferase activity|0016763||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462853.1;locus_tag=C9F05_RS21460;product=uridine phosphorylase;protein_id=WP_000045169.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	11346	12158	.	+	.	ID=gene-C9F05_RS21465;Name=C9F05_RS21465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21465;old_locus_tag=C9F05_22055
NZ_PYKE01000314.1	Protein Homology	CDS	11346	12158	.	+	0	ID=cds-WP_000213959.1;Parent=gene-C9F05_RS21465;Dbxref=GenBank:WP_000213959.1;Name=WP_000213959.1;Ontology_term=GO:0016787,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462852.1;locus_tag=C9F05_RS21465;product=dienelactone hydrolase family protein;protein_id=WP_000213959.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	12238	13581	.	-	.	ID=gene-C9F05_RS21470;Name=C9F05_RS21470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21470;old_locus_tag=C9F05_22060
NZ_PYKE01000314.1	Protein Homology	CDS	12238	13581	.	-	0	ID=cds-WP_000017947.1;Parent=gene-C9F05_RS21470;Dbxref=GenBank:WP_000017947.1;Name=WP_000017947.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462851.1;locus_tag=C9F05_RS21470;product=anaerobic sulfatase maturase;protein_id=WP_000017947.1;transl_table=11
NZ_PYKE01000314.1	RefSeq	gene	13916	16180	.	-	.	ID=gene-C9F05_RS21480;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;locus_tag=C9F05_RS21480;old_locus_tag=C9F05_22065
NZ_PYKE01000314.1	Protein Homology	CDS	13916	16180	.	-	0	ID=cds-WP_000154195.1;Parent=gene-C9F05_RS21480;Dbxref=GenBank:WP_000154195.1;Name=WP_000154195.1;Ontology_term=GO:0008652,GO:0009086,GO:0003871,GO:0008270;gbkey=CDS;gene=metE;go_function=5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|0003871||IEA,zinc ion binding|0008270||IEA;go_process=amino acid biosynthetic process|0008652||IEA,methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462850.1;locus_tag=C9F05_RS21480;product=5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase;protein_id=WP_000154195.1;transl_table=11
##sequence-region NZ_PYKE01000158.1 1 348
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000158.1	RefSeq	region	1	348	.	+	.	ID=NZ_PYKE01000158.1:1..348;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000158.1	RefSeq	gene	1	208	.	-	.	ID=gene-C9F05_RS11085;Name=C9F05_RS11085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11085;old_locus_tag=C9F05_11370;partial=true;start_range=.,1
NZ_PYKE01000158.1	Protein Homology	CDS	1	208	.	-	0	ID=cds-WP_173644059.1;Parent=gene-C9F05_RS11085;Dbxref=GenBank:WP_173644059.1;Name=WP_173644059.1;Ontology_term=GO:0006814,GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459059.1;locus_tag=C9F05_RS11085;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_173644059.1;start_range=.,1;transl_table=11
NZ_PYKE01000158.1	RefSeq	gene	221	348	.	-	.	ID=gene-C9F05_RS23980;Name=C9F05_RS23980;end_range=348,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23980;old_locus_tag=C9F05_11375;partial=true
NZ_PYKE01000158.1	Protein Homology	CDS	221	348	.	-	2	ID=cds-WP_072204791.1;Parent=gene-C9F05_RS23980;Dbxref=GenBank:WP_072204791.1;Name=WP_072204791.1;end_range=348,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9F05_RS23980;partial=true;product=biotin/lipoyl-containing protein;protein_id=WP_072204791.1;transl_table=11
##sequence-region NZ_PYKE01000174.1 1 16030
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000174.1	RefSeq	region	1	16030	.	+	.	ID=NZ_PYKE01000174.1:1..16030;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000174.1	RefSeq	gene	29	1681	.	+	.	ID=gene-C9F05_RS11815;Name=hcp;gbkey=Gene;gene=hcp;gene_biotype=protein_coding;gene_synonym=priS;locus_tag=C9F05_RS11815;old_locus_tag=C9F05_12150
NZ_PYKE01000174.1	Protein Homology	CDS	29	1681	.	+	0	ID=cds-WP_135370307.1;Parent=gene-C9F05_RS11815;Dbxref=GenBank:WP_135370307.1;Name=WP_135370307.1;Ontology_term=GO:0016661,GO:0051536;gbkey=CDS;gene=hcp;go_function=oxidoreductase activity%2C acting on other nitrogenous compounds as donors|0016661||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122080.1;locus_tag=C9F05_RS11815;product=hydroxylamine reductase;protein_id=WP_135370307.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	1693	2661	.	+	.	ID=gene-C9F05_RS11820;Name=hcr;gbkey=Gene;gene=hcr;gene_biotype=protein_coding;locus_tag=C9F05_RS11820;old_locus_tag=C9F05_12155
NZ_PYKE01000174.1	Protein Homology	CDS	1693	2661	.	+	0	ID=cds-WP_023216393.1;Parent=gene-C9F05_RS11820;Dbxref=GenBank:WP_023216393.1;Name=WP_023216393.1;Ontology_term=GO:0016491,GO:0051536;gbkey=CDS;gene=hcr;go_function=oxidoreductase activity|0016491||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308985.1;locus_tag=C9F05_RS11820;product=NADH oxidoreductase;protein_id=WP_023216393.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	2819	4537	.	+	.	ID=gene-C9F05_RS11825;Name=poxB;gbkey=Gene;gene=poxB;gene_biotype=protein_coding;locus_tag=C9F05_RS11825;old_locus_tag=C9F05_12160
NZ_PYKE01000174.1	Protein Homology	CDS	2819	4537	.	+	0	ID=cds-WP_000815324.1;Parent=gene-C9F05_RS11825;Dbxref=GenBank:WP_000815324.1;Name=WP_000815324.1;Ontology_term=GO:0006090,GO:0000287,GO:0030976,GO:0052737;gbkey=CDS;gene=poxB;go_function=magnesium ion binding|0000287||IEA,thiamine pyrophosphate binding|0030976||IEA,pyruvate dehydrogenase (quinone) activity|0052737||IEA;go_process=pyruvate metabolic process|0006090||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459912.1;locus_tag=C9F05_RS11825;product=ubiquinone-dependent pyruvate dehydrogenase;protein_id=WP_000815324.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	4576	5577	.	+	.	ID=gene-C9F05_RS11830;Name=ltaE;gbkey=Gene;gene=ltaE;gene_biotype=protein_coding;locus_tag=C9F05_RS11830;old_locus_tag=C9F05_12165
NZ_PYKE01000174.1	Protein Homology	CDS	4576	5577	.	+	0	ID=cds-WP_000566346.1;Parent=gene-C9F05_RS11830;Dbxref=GenBank:WP_000566346.1;Name=WP_000566346.1;Ontology_term=GO:0006520,GO:0016829;gbkey=CDS;gene=ltaE;go_function=lyase activity|0016829||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459911.1;locus_tag=C9F05_RS11830;product=low-specificity L-threonine aldolase;protein_id=WP_000566346.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	5588	7021	.	+	.	ID=gene-C9F05_RS11835;Name=C9F05_RS11835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11835;old_locus_tag=C9F05_12170
NZ_PYKE01000174.1	Protein Homology	CDS	5588	7021	.	+	0	ID=cds-WP_135370308.1;Parent=gene-C9F05_RS11835;Dbxref=GenBank:WP_135370308.1;Name=WP_135370308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459910.1;locus_tag=C9F05_RS11835;product=SDR family oxidoreductase;protein_id=WP_135370308.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	7117	8130	.	+	.	ID=gene-C9F05_RS11840;Name=C9F05_RS11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11840;old_locus_tag=C9F05_12175
NZ_PYKE01000174.1	Protein Homology	CDS	7117	8130	.	+	0	ID=cds-WP_000866903.1;Parent=gene-C9F05_RS11840;Dbxref=GenBank:WP_000866903.1;Name=WP_000866903.1;Ontology_term=GO:0016491,GO:0051287,GO:0070403;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459909.1;locus_tag=C9F05_RS11840;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_000866903.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	8127	8957	.	-	.	ID=gene-C9F05_RS11845;Name=C9F05_RS11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11845;old_locus_tag=C9F05_12180
NZ_PYKE01000174.1	Protein Homology	CDS	8127	8957	.	-	0	ID=cds-WP_000645850.1;Parent=gene-C9F05_RS11845;Dbxref=GenBank:WP_000645850.1;Name=WP_000645850.1;Ontology_term=GO:0071555,GO:0008270,GO:0008745,GO:0042834,GO:0046872;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA,peptidoglycan binding|0042834||IEA,metal ion binding|0046872||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459908.1;locus_tag=C9F05_RS11845;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_000645850.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	8954	9277	.	-	.	ID=gene-C9F05_RS11850;Name=C9F05_RS11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11850;old_locus_tag=C9F05_12185
NZ_PYKE01000174.1	Protein Homology	CDS	8954	9277	.	-	0	ID=cds-WP_001160725.1;Parent=gene-C9F05_RS11850;Dbxref=GenBank:WP_001160725.1;Name=WP_001160725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459907.1;locus_tag=C9F05_RS11850;product=heavy metal-binding domain-containing protein;protein_id=WP_001160725.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	9405	9920	.	+	.	ID=gene-C9F05_RS11855;Name=C9F05_RS11855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11855;old_locus_tag=C9F05_12190
NZ_PYKE01000174.1	Protein Homology	CDS	9405	9920	.	+	0	ID=cds-WP_001270724.1;Parent=gene-C9F05_RS11855;Dbxref=GenBank:WP_001270724.1;Name=WP_001270724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459868.1;locus_tag=C9F05_RS11855;product=lipoprotein;protein_id=WP_001270724.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	10150	10878	.	+	.	ID=gene-C9F05_RS11860;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=C9F05_RS11860;old_locus_tag=C9F05_12195
NZ_PYKE01000174.1	Protein Homology	CDS	10150	10878	.	+	0	ID=cds-WP_000027186.1;Parent=gene-C9F05_RS11860;Dbxref=GenBank:WP_000027186.1;Name=WP_000027186.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424,GO:0043190;gbkey=CDS;gene=artP;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742668.1;locus_tag=C9F05_RS11860;product=arginine ABC transporter ATP-binding protein ArtP;protein_id=WP_000027186.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	10896	11627	.	+	.	ID=gene-C9F05_RS11865;Name=artI;gbkey=Gene;gene=artI;gene_biotype=protein_coding;locus_tag=C9F05_RS11865;old_locus_tag=C9F05_12200
NZ_PYKE01000174.1	Protein Homology	CDS	10896	11627	.	+	0	ID=cds-WP_000756586.1;Parent=gene-C9F05_RS11865;Dbxref=GenBank:WP_000756586.1;Name=WP_000756586.1;Ontology_term=GO:0015424,GO:0043190;gbkey=CDS;gene=artI;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type amino acid transporter activity|0015424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459866.1;locus_tag=C9F05_RS11865;product=arginine ABC transporter substrate-binding protein ArtI;protein_id=WP_000756586.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	11634	12350	.	+	.	ID=gene-C9F05_RS11870;Name=artQ;gbkey=Gene;gene=artQ;gene_biotype=protein_coding;locus_tag=C9F05_RS11870;old_locus_tag=C9F05_12205
NZ_PYKE01000174.1	Protein Homology	CDS	11634	12350	.	+	0	ID=cds-WP_001001677.1;Parent=gene-C9F05_RS11870;Dbxref=GenBank:WP_001001677.1;Name=WP_001001677.1;Ontology_term=GO:0055085,GO:0071705,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=artQ;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA,nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459865.1;locus_tag=C9F05_RS11870;product=arginine ABC transporter permease ArtQ;protein_id=WP_001001677.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	12350	13018	.	+	.	ID=gene-C9F05_RS11875;Name=artM;gbkey=Gene;gene=artM;gene_biotype=protein_coding;locus_tag=C9F05_RS11875;old_locus_tag=C9F05_12210
NZ_PYKE01000174.1	Protein Homology	CDS	12350	13018	.	+	0	ID=cds-WP_000895396.1;Parent=gene-C9F05_RS11875;Dbxref=GenBank:WP_000895396.1;Name=WP_000895396.1;Ontology_term=GO:0071705,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=artM;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459864.1;locus_tag=C9F05_RS11875;product=arginine ABC transporter permease ArtM;protein_id=WP_000895396.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	13255	13986	.	+	.	ID=gene-C9F05_RS11880;Name=artJ;gbkey=Gene;gene=artJ;gene_biotype=protein_coding;locus_tag=C9F05_RS11880;old_locus_tag=C9F05_12215
NZ_PYKE01000174.1	Protein Homology	CDS	13255	13986	.	+	0	ID=cds-WP_000737538.1;Parent=gene-C9F05_RS11880;Dbxref=GenBank:WP_000737538.1;Name=WP_000737538.1;gbkey=CDS;gene=artJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459863.1;locus_tag=C9F05_RS11880;product=arginine ABC transporter substrate-binding protein ArtJ;protein_id=WP_000737538.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	14205	15692	.	-	.	ID=gene-C9F05_RS11885;Name=C9F05_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11885;old_locus_tag=C9F05_12225
NZ_PYKE01000174.1	Protein Homology	CDS	14205	15692	.	-	0	ID=cds-WP_000644020.1;Parent=gene-C9F05_RS11885;Dbxref=GenBank:WP_000644020.1;Name=WP_000644020.1;Ontology_term=GO:0008484,GO:0046872;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459862.1;locus_tag=C9F05_RS11885;product=sulfatase;protein_id=WP_000644020.1;transl_table=11
NZ_PYKE01000174.1	RefSeq	gene	15702	16022	.	-	.	ID=gene-C9F05_RS11890;Name=C9F05_RS11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11890;old_locus_tag=C9F05_12230
NZ_PYKE01000174.1	Protein Homology	CDS	15702	16022	.	-	0	ID=cds-WP_000655399.1;Parent=gene-C9F05_RS11890;Dbxref=GenBank:WP_000655399.1;Name=WP_000655399.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459861.1;locus_tag=C9F05_RS11890;product=PTS sugar transporter subunit IIB;protein_id=WP_000655399.1;transl_table=11
##sequence-region NZ_PYKE01000121.1 1 341
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000121.1	RefSeq	region	1	341	.	+	.	ID=NZ_PYKE01000121.1:1..341;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
##sequence-region NZ_PYKE01000162.1 1 336
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000162.1	RefSeq	region	1	336	.	+	.	ID=NZ_PYKE01000162.1:1..336;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000162.1	RefSeq	pseudogene	197	336	.	-	.	ID=gene-C9F05_RS11460;Name=ssb1;end_range=336,.;gbkey=Gene;gene=ssb1;gene_biotype=pseudogene;locus_tag=C9F05_RS11460;old_locus_tag=C9F05_11775;partial=true;pseudo=true
NZ_PYKE01000162.1	Protein Homology	CDS	197	336	.	-	2	ID=cds-C9F05_RS11460;Parent=gene-C9F05_RS11460;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=336,.;gbkey=CDS;gene=ssb1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463121.1;locus_tag=C9F05_RS11460;partial=true;product=single-stranded DNA-binding protein SSB1;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000041.1 1 330
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000041.1	RefSeq	region	1	330	.	+	.	ID=NZ_PYKE01000041.1:1..330;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
##sequence-region NZ_PYKE01000305.1 1 329
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000305.1	RefSeq	region	1	329	.	+	.	ID=NZ_PYKE01000305.1:1..329;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000305.1	RefSeq	gene	80	329	.	+	.	ID=gene-C9F05_RS20730;Name=C9F05_RS20730;end_range=329,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20730;old_locus_tag=C9F05_21310;partial=true
NZ_PYKE01000305.1	Protein Homology	CDS	80	329	.	+	0	ID=cds-WP_135370600.1;Parent=gene-C9F05_RS20730;Dbxref=GenBank:WP_135370600.1;Name=WP_135370600.1;Ontology_term=GO:0006310,GO:0006313,GO:0015074,GO:0032196,GO:0003677,GO:0004803,GO:0046872;end_range=329,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA,metal ion binding|0046872||IEA;go_process=DNA recombination|0006310||IEA,DNA transposition|0006313||IEA,DNA integration|0015074||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611456.1;locus_tag=C9F05_RS20730;partial=true;product=transposase;protein_id=WP_135370600.1;transl_table=11
##sequence-region NZ_PYKE01000138.1 1 15499
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000138.1	RefSeq	region	1	15499	.	+	.	ID=NZ_PYKE01000138.1:1..15499;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000138.1	RefSeq	gene	2	796	.	-	.	ID=gene-C9F05_RS10125;Name=C9F05_RS10125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10125;old_locus_tag=C9F05_10380
NZ_PYKE01000138.1	Protein Homology	CDS	2	796	.	-	0	ID=cds-WP_076737404.1;Parent=gene-C9F05_RS10125;Dbxref=GenBank:WP_076737404.1;Name=WP_076737404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000356512.1;locus_tag=C9F05_RS10125;product=hypothetical protein;protein_id=WP_076737404.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	837	1706	.	-	.	ID=gene-C9F05_RS10130;Name=C9F05_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10130;old_locus_tag=C9F05_10385
NZ_PYKE01000138.1	GeneMarkS-2+	CDS	837	1706	.	-	0	ID=cds-WP_079953566.1;Parent=gene-C9F05_RS10130;Dbxref=GenBank:WP_079953566.1;Name=WP_079953566.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS10130;product=hypothetical protein;protein_id=WP_079953566.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	1855	2637	.	+	.	ID=gene-C9F05_RS10135;Name=C9F05_RS10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10135;old_locus_tag=C9F05_10390
NZ_PYKE01000138.1	Protein Homology	CDS	1855	2637	.	+	0	ID=cds-WP_217810218.1;Parent=gene-C9F05_RS10135;Dbxref=GenBank:WP_217810218.1;Name=WP_217810218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001424109.1;locus_tag=C9F05_RS10135;product=type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein;protein_id=WP_217810218.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	2624	3553	.	+	.	ID=gene-C9F05_RS10140;Name=C9F05_RS10140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10140;old_locus_tag=C9F05_10395
NZ_PYKE01000138.1	Protein Homology	CDS	2624	3553	.	+	0	ID=cds-WP_057935480.1;Parent=gene-C9F05_RS10140;Dbxref=GenBank:WP_057935480.1;Name=WP_057935480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000365810.1;locus_tag=C9F05_RS10140;product=nucleotidyl transferase AbiEii/AbiGii toxin family protein;protein_id=WP_057935480.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	3778	4935	.	-	.	ID=gene-C9F05_RS10145;Name=C9F05_RS10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10145;old_locus_tag=C9F05_10400
NZ_PYKE01000138.1	Protein Homology	CDS	3778	4935	.	-	0	ID=cds-WP_135370235.1;Parent=gene-C9F05_RS10145;Dbxref=GenBank:WP_135370235.1;Name=WP_135370235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008806483.1;locus_tag=C9F05_RS10145;product=DUF3322 domain-containing protein;protein_id=WP_135370235.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	4937	6283	.	-	.	ID=gene-C9F05_RS24030;Name=C9F05_RS24030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24030
NZ_PYKE01000138.1	Protein Homology	CDS	4937	6283	.	-	0	ID=cds-WP_440591215.1;Parent=gene-C9F05_RS24030;Dbxref=GenBank:WP_440591215.1;Name=WP_440591215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002379578.1;locus_tag=C9F05_RS24030;product=SbcC/MukB-like Walker B domain-containing protein;protein_id=WP_440591215.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	pseudogene	8021	8224	.	-	.	ID=gene-C9F05_RS24035;Name=C9F05_RS24035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24035;partial=true;pseudo=true;start_range=.,8021
NZ_PYKE01000138.1	Protein Homology	CDS	8021	8224	.	-	0	ID=cds-C9F05_RS24035;Parent=gene-C9F05_RS24035;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024944.6;locus_tag=C9F05_RS24035;partial=true;product=ATP-binding protein;pseudo=true;start_range=.,8021;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	8221	8970	.	-	.	ID=gene-C9F05_RS10155;Name=C9F05_RS10155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10155;old_locus_tag=C9F05_10410
NZ_PYKE01000138.1	Protein Homology	CDS	8221	8970	.	-	0	ID=cds-WP_176452589.1;Parent=gene-C9F05_RS10155;Dbxref=GenBank:WP_176452589.1;Name=WP_176452589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000145526.1;locus_tag=C9F05_RS10155;product=DUF4194 domain-containing protein;protein_id=WP_176452589.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	8976	10472	.	-	.	ID=gene-C9F05_RS10160;Name=C9F05_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10160;old_locus_tag=C9F05_10415
NZ_PYKE01000138.1	Protein Homology	CDS	8976	10472	.	-	0	ID=cds-WP_135370237.1;Parent=gene-C9F05_RS10160;Dbxref=GenBank:WP_135370237.1;Name=WP_135370237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008806486.1;locus_tag=C9F05_RS10160;product=DUF3375 domain-containing protein;protein_id=WP_135370237.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	11141	11317	.	+	.	ID=gene-C9F05_RS24040;Name=C9F05_RS24040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24040
NZ_PYKE01000138.1	Protein Homology	CDS	11141	11317	.	+	0	ID=cds-WP_369597815.1;Parent=gene-C9F05_RS24040;Dbxref=GenBank:WP_369597815.1;Name=WP_369597815.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF024750.6;locus_tag=C9F05_RS24040;product=Arm DNA-binding domain-containing protein;protein_id=WP_369597815.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	11508	12422	.	-	.	ID=gene-C9F05_RS10165;Name=C9F05_RS10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10165;old_locus_tag=C9F05_10425
NZ_PYKE01000138.1	Protein Homology	CDS	11508	12422	.	-	0	ID=cds-WP_135370238.1;Parent=gene-C9F05_RS10165;Dbxref=GenBank:WP_135370238.1;Name=WP_135370238.1;Ontology_term=GO:0006355,GO:0001216,GO:0032993;gbkey=CDS;go_component=protein-DNA complex|0032993||IEA;go_function=DNA-binding transcription activator activity|0001216||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441073.1;locus_tag=C9F05_RS10165;product=LysR family transcriptional regulator;protein_id=WP_135370238.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	12523	13146	.	+	.	ID=gene-C9F05_RS10170;Name=C9F05_RS10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10170;old_locus_tag=C9F05_10430
NZ_PYKE01000138.1	Protein Homology	CDS	12523	13146	.	+	0	ID=cds-WP_000697438.1;Parent=gene-C9F05_RS10170;Dbxref=GenBank:WP_000697438.1;Name=WP_000697438.1;Ontology_term=GO:0008753,GO:0009055,GO:0010181,GO:0016491,GO:0050136,GO:0050446;gbkey=CDS;go_function=NADPH dehydrogenase (quinone) activity|0008753||IEA,electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA,NADH dehydrogenase (quinone) (non-electrogenic) activity|0050136||IEA,azobenzene reductase (NADP+) activity|0050446||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000697438.1;locus_tag=C9F05_RS10170;product=FMN-dependent NADH-azoreductase;protein_id=WP_000697438.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	13172	13435	.	+	.	ID=gene-C9F05_RS10175;Name=C9F05_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10175;old_locus_tag=C9F05_10435
NZ_PYKE01000138.1	Protein Homology	CDS	13172	13435	.	+	0	ID=cds-WP_135370239.1;Parent=gene-C9F05_RS10175;Dbxref=GenBank:WP_135370239.1;Name=WP_135370239.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018986.6;locus_tag=C9F05_RS10175;product=YdgH/BhsA/McbA-like domain containing protein;protein_id=WP_135370239.1;transl_table=11
NZ_PYKE01000138.1	RefSeq	gene	13511	14830	.	+	.	ID=gene-C9F05_RS10180;Name=C9F05_RS10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10180;old_locus_tag=C9F05_10440
NZ_PYKE01000138.1	Protein Homology	CDS	13511	14830	.	+	0	ID=cds-WP_135370240.1;Parent=gene-C9F05_RS10180;Dbxref=GenBank:WP_135370240.1;Name=WP_135370240.1;Ontology_term=GO:0000166,GO:0016491;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001534139.1;locus_tag=C9F05_RS10180;product=ferredoxin reductase family protein;protein_id=WP_135370240.1;transl_table=11
##sequence-region NZ_PYKE01000064.1 1 322
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000064.1	RefSeq	region	1	322	.	+	.	ID=NZ_PYKE01000064.1:1..322;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000064.1	RefSeq	gene	1	322	.	-	.	ID=gene-C9F05_RS04040;Name=C9F05_RS04040;end_range=322,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04040;old_locus_tag=C9F05_04110;partial=true;start_range=.,1
NZ_PYKE01000064.1	Protein Homology	CDS	1	322	.	-	0	ID=cds-WP_217810221.1;Parent=gene-C9F05_RS04040;Dbxref=GenBank:WP_217810221.1;Name=WP_217810221.1;Ontology_term=GO:0006814,GO:0016829;end_range=322,.;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459059.1;locus_tag=C9F05_RS04040;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_217810221.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000300.1 1 320
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000300.1	RefSeq	region	1	320	.	+	.	ID=NZ_PYKE01000300.1:1..320;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000300.1	RefSeq	pseudogene	1	277	.	-	.	ID=gene-C9F05_RS20540;Name=C9F05_RS20540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS20540;old_locus_tag=C9F05_21105;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000300.1	Protein Homology	CDS	1	277	.	-	0	ID=cds-C9F05_RS20540;Parent=gene-C9F05_RS20540;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000549718.1;locus_tag=C9F05_RS20540;partial=true;product=glycosyltransferase;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000327.1 1 319
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000327.1	RefSeq	region	1	319	.	+	.	ID=NZ_PYKE01000327.1:1..319;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000327.1	RefSeq	gene	1	319	.	-	.	ID=gene-C9F05_RS22225;Name=C9F05_RS22225;end_range=319,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22225;old_locus_tag=C9F05_22810;partial=true;start_range=.,1
NZ_PYKE01000327.1	Protein Homology	CDS	1	319	.	-	2	ID=cds-WP_135370642.1;Parent=gene-C9F05_RS22225;Dbxref=GenBank:WP_135370642.1;Name=WP_135370642.1;end_range=319,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000272669.1;locus_tag=C9F05_RS22225;partial=true;product=RHS repeat-associated core domain-containing protein;protein_id=WP_135370642.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000281.1 1 318
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000281.1	RefSeq	region	1	318	.	+	.	ID=NZ_PYKE01000281.1:1..318;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000281.1	RefSeq	gene	99	230	.	+	.	ID=gene-C9F05_RS18680;Name=C9F05_RS18680;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9F05_RS18680;old_locus_tag=C9F05_19215
NZ_PYKE01000281.1	cmsearch	ncRNA	99	230	.	+	.	ID=rna-C9F05_RS18680;Parent=gene-C9F05_RS18680;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS18680;product=RtT sRNA
NZ_PYKE01000281.1	cmsearch	exon	99	230	.	+	.	ID=exon-C9F05_RS18680-1;Parent=rna-C9F05_RS18680;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS18680;product=RtT sRNA
##sequence-region NZ_PYKE01000053.1 1 317
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000053.1	RefSeq	region	1	317	.	+	.	ID=NZ_PYKE01000053.1:1..317;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000053.1	RefSeq	pseudogene	112	317	.	-	.	ID=gene-C9F05_RS23635;Name=C9F05_RS23635;end_range=317,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23635;partial=true;pseudo=true
NZ_PYKE01000053.1	GeneMarkS-2+	CDS	112	317	.	-	2	ID=cds-C9F05_RS23635;Parent=gene-C9F05_RS23635;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=317,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23635;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000052.1 1 15434
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000052.1	RefSeq	region	1	15434	.	+	.	ID=NZ_PYKE01000052.1:1..15434;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000052.1	RefSeq	gene	550	1005	.	+	.	ID=gene-C9F05_RS03230;Name=csgB;gbkey=Gene;gene=csgB;gene_biotype=protein_coding;locus_tag=C9F05_RS03230;old_locus_tag=C9F05_03285
NZ_PYKE01000052.1	Protein Homology	CDS	550	1005	.	+	0	ID=cds-WP_000791655.1;Parent=gene-C9F05_RS03230;Dbxref=GenBank:WP_000791655.1;Name=WP_000791655.1;gbkey=CDS;gene=csgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460114.1;locus_tag=C9F05_RS03230;product=curli minor subunit CsgB;protein_id=WP_000791655.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	1047	1502	.	+	.	ID=gene-C9F05_RS03235;Name=csgA;gbkey=Gene;gene=csgA;gene_biotype=protein_coding;locus_tag=C9F05_RS03235;old_locus_tag=C9F05_03290
NZ_PYKE01000052.1	Protein Homology	CDS	1047	1502	.	+	0	ID=cds-WP_000771416.1;Parent=gene-C9F05_RS03235;Dbxref=GenBank:WP_000771416.1;Name=WP_000771416.1;gbkey=CDS;gene=csgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460115.1;locus_tag=C9F05_RS03235;product=curli major subunit CsgA;protein_id=WP_000771416.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	1564	1890	.	+	.	ID=gene-C9F05_RS03240;Name=csgC;gbkey=Gene;gene=csgC;gene_biotype=protein_coding;locus_tag=C9F05_RS03240;old_locus_tag=C9F05_03295
NZ_PYKE01000052.1	Protein Homology	CDS	1564	1890	.	+	0	ID=cds-WP_000557256.1;Parent=gene-C9F05_RS03240;Dbxref=GenBank:WP_000557256.1;Name=WP_000557256.1;gbkey=CDS;gene=csgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460116.1;locus_tag=C9F05_RS03240;product=curli assembly chaperone CsgC;protein_id=WP_000557256.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	2021	2341	.	+	.	ID=gene-C9F05_RS03245;Name=C9F05_RS03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03245;old_locus_tag=C9F05_03300
NZ_PYKE01000052.1	Protein Homology	CDS	2021	2341	.	+	0	ID=cds-WP_079945188.1;Parent=gene-C9F05_RS03245;Dbxref=GenBank:WP_079945188.1;Name=WP_079945188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460117.1;locus_tag=C9F05_RS03245;product=type 1 fimbrial protein;protein_id=WP_079945188.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	2428	2967	.	+	.	ID=gene-C9F05_RS03250;Name=ymdB;gbkey=Gene;gene=ymdB;gene_biotype=protein_coding;locus_tag=C9F05_RS03250;old_locus_tag=C9F05_03305
NZ_PYKE01000052.1	Protein Homology	CDS	2428	2967	.	+	0	ID=cds-WP_000203941.1;Parent=gene-C9F05_RS03250;Dbxref=GenBank:WP_000203941.1;Name=WP_000203941.1;Ontology_term=GO:0003824;gbkey=CDS;gene=ymdB;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460118.1;locus_tag=C9F05_RS03250;product=O-acetyl-ADP-ribose deacetylase;protein_id=WP_000203941.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	2903	4390	.	+	.	ID=gene-C9F05_RS03255;Name=C9F05_RS03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03255;old_locus_tag=C9F05_03310
NZ_PYKE01000052.1	Protein Homology	CDS	2903	4390	.	+	0	ID=cds-WP_135370024.1;Parent=gene-C9F05_RS03255;Dbxref=GenBank:WP_135370024.1;Name=WP_135370024.1;Ontology_term=GO:0032049,GO:0090483;gbkey=CDS;go_function=phosphatidylglycerol-phosphatidylethanolamine phosphatidyltransferase activity|0090483||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706957.2;locus_tag=C9F05_RS03255;product=phospholipase D family protein;protein_id=WP_135370024.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	4407	5561	.	-	.	ID=gene-C9F05_RS03260;Name=mdoC;gbkey=Gene;gene=mdoC;gene_biotype=protein_coding;locus_tag=C9F05_RS03260;old_locus_tag=C9F05_03315
NZ_PYKE01000052.1	Protein Homology	CDS	4407	5561	.	-	0	ID=cds-WP_135370025.1;Parent=gene-C9F05_RS03260;Dbxref=GenBank:WP_135370025.1;Name=WP_135370025.1;Ontology_term=GO:0016740;gbkey=CDS;gene=mdoC;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460120.1;locus_tag=C9F05_RS03260;product=glucans biosynthesis protein MdoC;protein_id=WP_135370025.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	5833	7368	.	+	.	ID=gene-C9F05_RS03270;Name=mdoG;gbkey=Gene;gene=mdoG;gene_biotype=protein_coding;locus_tag=C9F05_RS03270;old_locus_tag=C9F05_03320
NZ_PYKE01000052.1	Protein Homology	CDS	5833	7368	.	+	0	ID=cds-WP_001562609.1;Parent=gene-C9F05_RS03270;Dbxref=GenBank:WP_001562609.1;Name=WP_001562609.1;gbkey=CDS;gene=mdoG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460121.1;locus_tag=C9F05_RS03270;product=glucans biosynthesis protein MdoG;protein_id=WP_001562609.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	7361	9904	.	+	.	ID=gene-C9F05_RS03275;Name=mdoH;gbkey=Gene;gene=mdoH;gene_biotype=protein_coding;locus_tag=C9F05_RS03275;old_locus_tag=C9F05_03325
NZ_PYKE01000052.1	Protein Homology	CDS	7361	9904	.	+	0	ID=cds-WP_001580605.1;Parent=gene-C9F05_RS03275;Dbxref=GenBank:WP_001580605.1;Name=WP_001580605.1;Ontology_term=GO:0016758;gbkey=CDS;gene=mdoH;go_function=hexosyltransferase activity|0016758||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001044602.1;locus_tag=C9F05_RS03275;product=glucans biosynthesis glucosyltransferase MdoH;protein_id=WP_001580605.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	9970	10197	.	+	.	ID=gene-C9F05_RS03280;Name=C9F05_RS03280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03280;old_locus_tag=C9F05_03330
NZ_PYKE01000052.1	Protein Homology	CDS	9970	10197	.	+	0	ID=cds-WP_001217832.1;Parent=gene-C9F05_RS03280;Dbxref=GenBank:WP_001217832.1;Name=WP_001217832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460123.1;locus_tag=C9F05_RS03280;product=YceK/YidQ family lipoprotein;protein_id=WP_001217832.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	10198	10572	.	-	.	ID=gene-C9F05_RS03285;Name=C9F05_RS03285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03285;old_locus_tag=C9F05_03335
NZ_PYKE01000052.1	Protein Homology	CDS	10198	10572	.	-	0	ID=cds-WP_000180050.1;Parent=gene-C9F05_RS03285;Dbxref=GenBank:WP_000180050.1;Name=WP_000180050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460124.1;locus_tag=C9F05_RS03285;product=MysB family protein;protein_id=WP_000180050.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	10654	11868	.	-	.	ID=gene-C9F05_RS03290;Name=mdtG;gbkey=Gene;gene=mdtG;gene_biotype=protein_coding;locus_tag=C9F05_RS03290;old_locus_tag=C9F05_03340
NZ_PYKE01000052.1	Protein Homology	CDS	10654	11868	.	-	0	ID=cds-WP_000075053.1;Parent=gene-C9F05_RS03290;Dbxref=GenBank:WP_000075053.1;Name=WP_000075053.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=mdtG;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460125.1;locus_tag=C9F05_RS03290;product=multidrug efflux MFS transporter MdtG;protein_id=WP_000075053.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	12023	12943	.	-	.	ID=gene-C9F05_RS03295;Name=C9F05_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03295;old_locus_tag=C9F05_03350
NZ_PYKE01000052.1	Protein Homology	CDS	12023	12943	.	-	0	ID=cds-WP_000163973.1;Parent=gene-C9F05_RS03295;Dbxref=GenBank:WP_000163973.1;Name=WP_000163973.1;Ontology_term=GO:0036104,GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=Kdo2-lipid A biosynthetic process|0036104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460126.1;locus_tag=C9F05_RS03295;product=Kdo(2)-lipid IV(A) acyltransferase;protein_id=WP_000163973.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	13163	14215	.	+	.	ID=gene-C9F05_RS03300;Name=trhO;gbkey=Gene;gene=trhO;gene_biotype=protein_coding;gene_synonym=yceA;locus_tag=C9F05_RS03300;old_locus_tag=C9F05_03355
NZ_PYKE01000052.1	Protein Homology	CDS	13163	14215	.	+	0	ID=cds-WP_001144629.1;Parent=gene-C9F05_RS03300;Dbxref=GenBank:WP_001144629.1;Name=WP_001144629.1;Ontology_term=GO:0006400;gbkey=CDS;gene=trhO;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460127.1;locus_tag=C9F05_RS03300;product=oxygen-dependent tRNA uridine(34) hydroxylase TrhO;protein_id=WP_001144629.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	14267	14842	.	-	.	ID=gene-C9F05_RS03305;Name=C9F05_RS03305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03305;old_locus_tag=C9F05_03360
NZ_PYKE01000052.1	Protein Homology	CDS	14267	14842	.	-	0	ID=cds-WP_000739886.1;Parent=gene-C9F05_RS03305;Dbxref=GenBank:WP_000739886.1;Name=WP_000739886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460128.1;locus_tag=C9F05_RS03305;product=YceI family protein;protein_id=WP_000739886.1;transl_table=11
NZ_PYKE01000052.1	RefSeq	gene	14839	15411	.	-	.	ID=gene-C9F05_RS03310;Name=C9F05_RS03310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03310;old_locus_tag=C9F05_03365
NZ_PYKE01000052.1	Protein Homology	CDS	14839	15411	.	-	0	ID=cds-WP_001159784.1;Parent=gene-C9F05_RS03310;Dbxref=GenBank:WP_001159784.1;Name=WP_001159784.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460129.1;locus_tag=C9F05_RS03310;product=cytochrome b;protein_id=WP_001159784.1;transl_table=11
##sequence-region NZ_PYKE01000026.1 1 306
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000026.1	RefSeq	region	1	306	.	+	.	ID=NZ_PYKE01000026.1:1..306;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000026.1	RefSeq	gene	1	306	.	-	.	ID=gene-C9F05_RS01035;Name=C9F05_RS01035;end_range=306,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01035;old_locus_tag=C9F05_01045;partial=true;start_range=.,1
NZ_PYKE01000026.1	Protein Homology	CDS	1	306	.	-	0	ID=cds-WP_167854893.1;Parent=gene-C9F05_RS01035;Dbxref=GenBank:WP_167854893.1;Name=WP_167854893.1;Ontology_term=GO:0008484;end_range=306,.;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462037.1;locus_tag=C9F05_RS01035;partial=true;product=sulfatase-like hydrolase/transferase;protein_id=WP_167854893.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000049.1 1 15181
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000049.1	RefSeq	region	1	15181	.	+	.	ID=NZ_PYKE01000049.1:1..15181;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000049.1	RefSeq	gene	153	1076	.	-	.	ID=gene-C9F05_RS03125;Name=C9F05_RS03125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03125;old_locus_tag=C9F05_03175
NZ_PYKE01000049.1	Protein Homology	CDS	153	1076	.	-	0	ID=cds-WP_000540892.1;Parent=gene-C9F05_RS03125;Dbxref=GenBank:WP_000540892.1;Name=WP_000540892.1;Ontology_term=GO:0005975,GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462047.1;locus_tag=C9F05_RS03125;product=polysaccharide deacetylase family protein;protein_id=WP_000540892.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	1115	1993	.	-	.	ID=gene-C9F05_RS03130;Name=C9F05_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03130;old_locus_tag=C9F05_03180
NZ_PYKE01000049.1	Protein Homology	CDS	1115	1993	.	-	0	ID=cds-WP_023260164.1;Parent=gene-C9F05_RS03130;Dbxref=GenBank:WP_023260164.1;Name=WP_023260164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462048.1;locus_tag=C9F05_RS03130;product=carbon-nitrogen hydrolase family protein;protein_id=WP_023260164.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	2389	3693	.	-	.	ID=gene-C9F05_RS03135;Name=C9F05_RS03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03135;old_locus_tag=C9F05_03185
NZ_PYKE01000049.1	Protein Homology	CDS	2389	3693	.	-	0	ID=cds-WP_000784371.1;Parent=gene-C9F05_RS03135;Dbxref=GenBank:WP_000784371.1;Name=WP_000784371.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462049.1;locus_tag=C9F05_RS03135;product=MFS transporter;protein_id=WP_000784371.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	4098	5282	.	+	.	ID=gene-C9F05_RS03145;Name=uxuA;gbkey=Gene;gene=uxuA;gene_biotype=protein_coding;locus_tag=C9F05_RS03145;old_locus_tag=C9F05_03195
NZ_PYKE01000049.1	Protein Homology	CDS	4098	5282	.	+	0	ID=cds-WP_000815487.1;Parent=gene-C9F05_RS03145;Dbxref=GenBank:WP_000815487.1;Name=WP_000815487.1;Ontology_term=GO:0006064,GO:0008927;gbkey=CDS;gene=uxuA;go_function=mannonate dehydratase activity|0008927||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462050.1;locus_tag=C9F05_RS03145;product=mannonate dehydratase;protein_id=WP_000815487.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	5393	6865	.	+	.	ID=gene-C9F05_RS03150;Name=C9F05_RS03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03150;old_locus_tag=C9F05_03200
NZ_PYKE01000049.1	Protein Homology	CDS	5393	6865	.	+	0	ID=cds-WP_001620029.1;Parent=gene-C9F05_RS03150;Dbxref=GenBank:WP_001620029.1;Name=WP_001620029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462051.1;locus_tag=C9F05_RS03150;product=fructuronate reductase;protein_id=WP_001620029.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	6877	8289	.	+	.	ID=gene-C9F05_RS03155;Name=uxaC;gbkey=Gene;gene=uxaC;gene_biotype=protein_coding;locus_tag=C9F05_RS03155;old_locus_tag=C9F05_03205
NZ_PYKE01000049.1	Protein Homology	CDS	6877	8289	.	+	0	ID=cds-WP_135370020.1;Parent=gene-C9F05_RS03155;Dbxref=GenBank:WP_135370020.1;Name=WP_135370020.1;Ontology_term=GO:0006064,GO:0008880;gbkey=CDS;gene=uxaC;go_function=glucuronate isomerase activity|0008880||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462052.1;locus_tag=C9F05_RS03155;product=glucuronate isomerase;protein_id=WP_135370020.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	8589	9647	.	-	.	ID=gene-C9F05_RS03160;Name=C9F05_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03160;old_locus_tag=C9F05_03210
NZ_PYKE01000049.1	Protein Homology	CDS	8589	9647	.	-	0	ID=cds-WP_000475245.1;Parent=gene-C9F05_RS03160;Dbxref=GenBank:WP_000475245.1;Name=WP_000475245.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0008270,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA,zinc ion binding|0008270||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462053.1;locus_tag=C9F05_RS03160;product=methyl-accepting chemotaxis protein;protein_id=WP_000475245.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	10317	12173	.	-	.	ID=gene-C9F05_RS03170;Name=gss;gbkey=Gene;gene=gss;gene_biotype=protein_coding;locus_tag=C9F05_RS03170;old_locus_tag=C9F05_03220
NZ_PYKE01000049.1	Protein Homology	CDS	10317	12173	.	-	0	ID=cds-WP_135370021.1;Parent=gene-C9F05_RS03170;Dbxref=GenBank:WP_135370021.1;Name=WP_135370021.1;gbkey=CDS;gene=gss;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462054.1;locus_tag=C9F05_RS03170;product=bifunctional glutathionylspermidine amidase/synthase;protein_id=WP_135370021.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	12400	13266	.	+	.	ID=gene-C9F05_RS03175;Name=yghU;gbkey=Gene;gene=yghU;gene_biotype=protein_coding;locus_tag=C9F05_RS03175;old_locus_tag=C9F05_03225
NZ_PYKE01000049.1	Protein Homology	CDS	12400	13266	.	+	0	ID=cds-WP_000774852.1;Parent=gene-C9F05_RS03175;Dbxref=GenBank:WP_000774852.1;Name=WP_000774852.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=yghU;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462055.1;locus_tag=C9F05_RS03175;product=glutathione-dependent disulfide-bond oxidoreductase;protein_id=WP_000774852.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	13334	14044	.	-	.	ID=gene-C9F05_RS03180;Name=C9F05_RS03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03180;old_locus_tag=C9F05_03230
NZ_PYKE01000049.1	Protein Homology	CDS	13334	14044	.	-	0	ID=cds-WP_001220943.1;Parent=gene-C9F05_RS03180;Dbxref=GenBank:WP_001220943.1;Name=WP_001220943.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462056.1;locus_tag=C9F05_RS03180;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_001220943.1;transl_table=11
NZ_PYKE01000049.1	RefSeq	gene	14044	15096	.	-	.	ID=gene-C9F05_RS03185;Name=C9F05_RS03185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03185;old_locus_tag=C9F05_03235
NZ_PYKE01000049.1	Protein Homology	CDS	14044	15096	.	-	0	ID=cds-WP_135370022.1;Parent=gene-C9F05_RS03185;Dbxref=GenBank:WP_135370022.1;Name=WP_135370022.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462057.1;locus_tag=C9F05_RS03185;product=ABC transporter substrate-binding protein;protein_id=WP_135370022.1;transl_table=11
##sequence-region NZ_PYKE01000074.1 1 56733
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000074.1	RefSeq	region	1	56733	.	+	.	ID=NZ_PYKE01000074.1:1..56733;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000074.1	RefSeq	gene	1	427	.	-	.	ID=gene-C9F05_RS04650;Name=C9F05_RS04650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04650;old_locus_tag=C9F05_04715;partial=true;start_range=.,1
NZ_PYKE01000074.1	Protein Homology	CDS	1	427	.	-	0	ID=cds-WP_079905374.1;Parent=gene-C9F05_RS04650;Dbxref=GenBank:WP_079905374.1;Name=WP_079905374.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001668046.1;locus_tag=C9F05_RS04650;partial=true;product=aldehyde dehydrogenase family protein;protein_id=WP_079905374.1;start_range=.,1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	484	1476	.	-	.	ID=gene-C9F05_RS04655;Name=C9F05_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04655;old_locus_tag=C9F05_04720
NZ_PYKE01000074.1	Protein Homology	CDS	484	1476	.	-	0	ID=cds-WP_135370065.1;Parent=gene-C9F05_RS04655;Dbxref=GenBank:WP_135370065.1;Name=WP_135370065.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004183482.1;locus_tag=C9F05_RS04655;product=transketolase family protein;protein_id=WP_135370065.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	1476	2321	.	-	.	ID=gene-C9F05_RS04660;Name=C9F05_RS04660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04660;old_locus_tag=C9F05_04725
NZ_PYKE01000074.1	Protein Homology	CDS	1476	2321	.	-	0	ID=cds-WP_000784292.1;Parent=gene-C9F05_RS04660;Dbxref=GenBank:WP_000784292.1;Name=WP_000784292.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225957.1;locus_tag=C9F05_RS04660;product=transketolase;protein_id=WP_000784292.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	2335	3084	.	-	.	ID=gene-C9F05_RS04665;Name=C9F05_RS04665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04665;old_locus_tag=C9F05_04730
NZ_PYKE01000074.1	Protein Homology	CDS	2335	3084	.	-	0	ID=cds-WP_135370066.1;Parent=gene-C9F05_RS04665;Dbxref=GenBank:WP_135370066.1;Name=WP_135370066.1;Ontology_term=GO:0016491,GO:0070403;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225956.1;locus_tag=C9F05_RS04665;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_135370066.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	3135	4466	.	-	.	ID=gene-C9F05_RS04670;Name=C9F05_RS04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04670;old_locus_tag=C9F05_04735
NZ_PYKE01000074.1	Protein Homology	CDS	3135	4466	.	-	0	ID=cds-WP_001518324.1;Parent=gene-C9F05_RS04670;Dbxref=GenBank:WP_001518324.1;Name=WP_001518324.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225955.1;locus_tag=C9F05_RS04670;product=MFS transporter;protein_id=WP_001518324.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	4805	5728	.	+	.	ID=gene-C9F05_RS04675;Name=C9F05_RS04675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04675;old_locus_tag=C9F05_04740
NZ_PYKE01000074.1	Protein Homology	CDS	4805	5728	.	+	0	ID=cds-WP_001075547.1;Parent=gene-C9F05_RS04675;Dbxref=GenBank:WP_001075547.1;Name=WP_001075547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225953.1;locus_tag=C9F05_RS04675;product=LysR substrate-binding domain-containing protein;protein_id=WP_001075547.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	5802	6476	.	+	.	ID=gene-C9F05_RS04680;Name=cecR;gbkey=Gene;gene=cecR;gene_biotype=protein_coding;locus_tag=C9F05_RS04680;old_locus_tag=C9F05_04745
NZ_PYKE01000074.1	Protein Homology	CDS	5802	6476	.	+	0	ID=cds-WP_001025254.1;Parent=gene-C9F05_RS04680;Dbxref=GenBank:WP_001025254.1;Name=WP_001025254.1;gbkey=CDS;gene=cecR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459797.1;locus_tag=C9F05_RS04680;product=transcriptional regulator CecR;protein_id=WP_001025254.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	6476	7471	.	+	.	ID=gene-C9F05_RS04685;Name=hlyD;gbkey=Gene;gene=hlyD;gene_biotype=protein_coding;locus_tag=C9F05_RS04685;old_locus_tag=C9F05_04750
NZ_PYKE01000074.1	Protein Homology	CDS	6476	7471	.	+	0	ID=cds-WP_000743436.1;Parent=gene-C9F05_RS04685;Dbxref=GenBank:WP_000743436.1;Name=WP_000743436.1;gbkey=CDS;gene=hlyD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459796.1;locus_tag=C9F05_RS04685;product=secretion protein HlyD;protein_id=WP_000743436.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	7464	9200	.	+	.	ID=gene-C9F05_RS04690;Name=C9F05_RS04690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04690;old_locus_tag=C9F05_04755
NZ_PYKE01000074.1	Protein Homology	CDS	7464	9200	.	+	0	ID=cds-WP_001287616.1;Parent=gene-C9F05_RS04690;Dbxref=GenBank:WP_001287616.1;Name=WP_001287616.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459795.1;locus_tag=C9F05_RS04690;product=ATP-binding cassette domain-containing protein;protein_id=WP_001287616.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	9193	10323	.	+	.	ID=gene-C9F05_RS04695;Name=C9F05_RS04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04695;old_locus_tag=C9F05_04760
NZ_PYKE01000074.1	Protein Homology	CDS	9193	10323	.	+	0	ID=cds-WP_000045762.1;Parent=gene-C9F05_RS04695;Dbxref=GenBank:WP_000045762.1;Name=WP_000045762.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459794.1;locus_tag=C9F05_RS04695;product=ABC transporter permease;protein_id=WP_000045762.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	10439	11545	.	+	.	ID=gene-C9F05_RS04700;Name=C9F05_RS04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04700;old_locus_tag=C9F05_04765
NZ_PYKE01000074.1	Protein Homology	CDS	10439	11545	.	+	0	ID=cds-WP_000469050.1;Parent=gene-C9F05_RS04700;Dbxref=GenBank:WP_000469050.1;Name=WP_000469050.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459793.1;locus_tag=C9F05_RS04700;product=ABC transporter permease;protein_id=WP_000469050.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	11507	11917	.	-	.	ID=gene-C9F05_RS04705;Name=C9F05_RS04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04705;old_locus_tag=C9F05_04770
NZ_PYKE01000074.1	Protein Homology	CDS	11507	11917	.	-	0	ID=cds-WP_000871970.1;Parent=gene-C9F05_RS04705;Dbxref=GenBank:WP_000871970.1;Name=WP_000871970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459792.1;locus_tag=C9F05_RS04705;product=YbhQ family protein;protein_id=WP_000871970.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	12050	12808	.	+	.	ID=gene-C9F05_RS04710;Name=C9F05_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04710;old_locus_tag=C9F05_04775
NZ_PYKE01000074.1	Protein Homology	CDS	12050	12808	.	+	0	ID=cds-WP_000192039.1;Parent=gene-C9F05_RS04710;Dbxref=GenBank:WP_000192039.1;Name=WP_000192039.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459791.1;locus_tag=C9F05_RS04710;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_000192039.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	12805	14046	.	+	.	ID=gene-C9F05_RS04715;Name=clsB;gbkey=Gene;gene=clsB;gene_biotype=protein_coding;locus_tag=C9F05_RS04715;old_locus_tag=C9F05_04780
NZ_PYKE01000074.1	Protein Homology	CDS	12805	14046	.	+	0	ID=cds-WP_000649639.1;Parent=gene-C9F05_RS04715;Dbxref=GenBank:WP_000649639.1;Name=WP_000649639.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=clsB;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459790.1;locus_tag=C9F05_RS04715;product=cardiolipin synthase ClsB;protein_id=WP_000649639.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	14046	15008	.	+	.	ID=gene-C9F05_RS04720;Name=C9F05_RS04720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04720;old_locus_tag=C9F05_04785
NZ_PYKE01000074.1	Protein Homology	CDS	14046	15008	.	+	0	ID=cds-WP_001129817.1;Parent=gene-C9F05_RS04720;Dbxref=GenBank:WP_001129817.1;Name=WP_001129817.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459789.1;locus_tag=C9F05_RS04720;product=lysylphosphatidylglycerol synthase transmembrane domain-containing protein;protein_id=WP_001129817.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	15011	15571	.	-	.	ID=gene-C9F05_RS04725;Name=C9F05_RS04725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04725;old_locus_tag=C9F05_04790
NZ_PYKE01000074.1	Protein Homology	CDS	15011	15571	.	-	0	ID=cds-WP_001052197.1;Parent=gene-C9F05_RS04725;Dbxref=GenBank:WP_001052197.1;Name=WP_001052197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459788.1;locus_tag=C9F05_RS04725;product=hypothetical protein;protein_id=WP_001052197.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	15579	16187	.	-	.	ID=gene-C9F05_RS04730;Name=C9F05_RS04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04730;old_locus_tag=C9F05_04795
NZ_PYKE01000074.1	Protein Homology	CDS	15579	16187	.	-	0	ID=cds-WP_077905247.1;Parent=gene-C9F05_RS04730;Dbxref=GenBank:WP_077905247.1;Name=WP_077905247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459787.1;locus_tag=C9F05_RS04730;product=hypothetical protein;protein_id=WP_077905247.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	16211	16918	.	-	.	ID=gene-C9F05_RS04735;Name=C9F05_RS04735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04735;old_locus_tag=C9F05_04800
NZ_PYKE01000074.1	Protein Homology	CDS	16211	16918	.	-	0	ID=cds-WP_135370067.1;Parent=gene-C9F05_RS04735;Dbxref=GenBank:WP_135370067.1;Name=WP_135370067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459786.1;locus_tag=C9F05_RS04735;product=Bax inhibitor-1 family protein;protein_id=WP_135370067.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	17064	17768	.	-	.	ID=gene-C9F05_RS04740;Name=C9F05_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04740;old_locus_tag=C9F05_04810
NZ_PYKE01000074.1	Protein Homology	CDS	17064	17768	.	-	0	ID=cds-WP_000373611.1;Parent=gene-C9F05_RS04740;Dbxref=GenBank:WP_000373611.1;Name=WP_000373611.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459785.1;locus_tag=C9F05_RS04740;product=Bax inhibitor-1/YccA family protein;protein_id=WP_000373611.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	17816	18268	.	-	.	ID=gene-C9F05_RS04745;Name=moaE;gbkey=Gene;gene=moaE;gene_biotype=protein_coding;locus_tag=C9F05_RS04745;old_locus_tag=C9F05_04815
NZ_PYKE01000074.1	Protein Homology	CDS	17816	18268	.	-	0	ID=cds-WP_000545202.1;Parent=gene-C9F05_RS04745;Dbxref=GenBank:WP_000545202.1;Name=WP_000545202.1;Ontology_term=GO:0006777;gbkey=CDS;gene=moaE;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459784.1;locus_tag=C9F05_RS04745;product=molybdopterin synthase catalytic subunit MoaE;protein_id=WP_000545202.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	18270	18515	.	-	.	ID=gene-C9F05_RS04750;Name=moaD;gbkey=Gene;gene=moaD;gene_biotype=protein_coding;locus_tag=C9F05_RS04750;old_locus_tag=C9F05_04820
NZ_PYKE01000074.1	Protein Homology	CDS	18270	18515	.	-	0	ID=cds-WP_000598599.1;Parent=gene-C9F05_RS04750;Dbxref=GenBank:WP_000598599.1;Name=WP_000598599.1;Ontology_term=GO:0006777;gbkey=CDS;gene=moaD;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308889.1;locus_tag=C9F05_RS04750;product=molybdopterin synthase sulfur carrier subunit;protein_id=WP_000598599.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	18508	18993	.	-	.	ID=gene-C9F05_RS04755;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=C9F05_RS04755;old_locus_tag=C9F05_04825
NZ_PYKE01000074.1	Protein Homology	CDS	18508	18993	.	-	0	ID=cds-WP_000080894.1;Parent=gene-C9F05_RS04755;Dbxref=GenBank:WP_000080894.1;Name=WP_000080894.1;Ontology_term=GO:0006777,GO:0061799;gbkey=CDS;gene=moaC;go_function=cyclic pyranopterin monophosphate synthase activity|0061799||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459782.1;locus_tag=C9F05_RS04755;product=cyclic pyranopterin monophosphate synthase MoaC;protein_id=WP_000080894.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	18996	19508	.	-	.	ID=gene-C9F05_RS04760;Name=moaB;gbkey=Gene;gene=moaB;gene_biotype=protein_coding;locus_tag=C9F05_RS04760;old_locus_tag=C9F05_04830
NZ_PYKE01000074.1	Protein Homology	CDS	18996	19508	.	-	0	ID=cds-WP_000084604.1;Parent=gene-C9F05_RS04760;Dbxref=GenBank:WP_000084604.1;Name=WP_000084604.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=moaB;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123739.1;locus_tag=C9F05_RS04760;product=molybdenum cofactor biosynthesis protein B;protein_id=WP_000084604.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	19530	20519	.	-	.	ID=gene-C9F05_RS04765;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=C9F05_RS04765;old_locus_tag=C9F05_04835
NZ_PYKE01000074.1	Protein Homology	CDS	19530	20519	.	-	0	ID=cds-WP_000168180.1;Parent=gene-C9F05_RS04765;Dbxref=GenBank:WP_000168180.1;Name=WP_000168180.1;Ontology_term=GO:0006777,GO:0046872,GO:0051539;gbkey=CDS;gene=moaA;go_function=metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459780.1;locus_tag=C9F05_RS04765;product=GTP 3'%2C8-cyclase MoaA;protein_id=WP_000168180.1;transl_table=11
NZ_PYKE01000074.1	cmsearch	riboswitch	20507	20651	.	-	.	ID=id-NZ_PYKE01000074.1:20507..20651;Dbxref=RFAM:RF01055;Note=molybdenum cofactor riboswitch;bound_moiety=molybdenum cofactor;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYKE01000074.1	RefSeq	gene	20916	21824	.	+	.	ID=gene-C9F05_RS04770;Name=yvcK;gbkey=Gene;gene=yvcK;gene_biotype=protein_coding;locus_tag=C9F05_RS04770;old_locus_tag=C9F05_04840
NZ_PYKE01000074.1	Protein Homology	CDS	20916	21824	.	+	0	ID=cds-WP_135370068.1;Parent=gene-C9F05_RS04770;Dbxref=GenBank:WP_135370068.1;Name=WP_135370068.1;gbkey=CDS;gene=yvcK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459779.1;locus_tag=C9F05_RS04770;product=uridine diphosphate-N-acetylglucosamine-binding protein YvcK;protein_id=WP_135370068.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	21919	24183	.	-	.	ID=gene-C9F05_RS04775;Name=slrP;gbkey=Gene;gene=slrP;gene_biotype=protein_coding;locus_tag=C9F05_RS04775;old_locus_tag=C9F05_04845
NZ_PYKE01000074.1	Protein Homology	CDS	21919	24183	.	-	0	ID=cds-WP_135370069.1;Parent=gene-C9F05_RS04775;Dbxref=GenBank:WP_135370069.1;Name=WP_135370069.1;gbkey=CDS;gene=slrP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001523006.1;locus_tag=C9F05_RS04775;product=SPI-1 type III secretion system effector E3 ubiquitin transferase SlrP;protein_id=WP_135370069.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	pseudogene	24191	24365	.	-	.	ID=gene-C9F05_RS23745;Name=C9F05_RS23745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23745;pseudo=true
NZ_PYKE01000074.1	Protein Homology	CDS	24191	24365	.	-	0	ID=cds-C9F05_RS23745;Parent=gene-C9F05_RS23745;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447236.1;locus_tag=C9F05_RS23745;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	24672	26693	.	-	.	ID=gene-C9F05_RS04780;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=C9F05_RS04780;old_locus_tag=C9F05_04850
NZ_PYKE01000074.1	Protein Homology	CDS	24672	26693	.	-	0	ID=cds-WP_000042502.1;Parent=gene-C9F05_RS04780;Dbxref=GenBank:WP_000042502.1;Name=WP_000042502.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123745.1;locus_tag=C9F05_RS04780;product=excinuclease ABC subunit UvrB;protein_id=WP_000042502.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	27345	28031	.	-	.	ID=gene-C9F05_RS04790;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=C9F05_RS04790;old_locus_tag=C9F05_04860
NZ_PYKE01000074.1	Protein Homology	CDS	27345	28031	.	-	0	ID=cds-WP_135370070.1;Parent=gene-C9F05_RS04790;Dbxref=GenBank:WP_135370070.1;Name=WP_135370070.1;Ontology_term=GO:0009102,GO:0000287,GO:0004141,GO:0005524;gbkey=CDS;gene=bioD;go_function=magnesium ion binding|0000287||IEA,dethiobiotin synthase activity|0004141||IEA,ATP binding|0005524||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459775.1;locus_tag=C9F05_RS04790;product=dethiobiotin synthase;protein_id=WP_135370070.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	28024	28779	.	-	.	ID=gene-C9F05_RS04795;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=C9F05_RS04795;old_locus_tag=C9F05_04865
NZ_PYKE01000074.1	Protein Homology	CDS	28024	28779	.	-	0	ID=cds-WP_000079911.1;Parent=gene-C9F05_RS04795;Dbxref=GenBank:WP_000079911.1;Name=WP_000079911.1;Ontology_term=GO:0009102,GO:0010340;gbkey=CDS;gene=bioC;go_function=carboxyl-O-methyltransferase activity|0010340||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459774.1;locus_tag=C9F05_RS04795;product=malonyl-ACP O-methyltransferase BioC;protein_id=WP_000079911.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	28763	29920	.	-	.	ID=gene-C9F05_RS04800;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=C9F05_RS04800;old_locus_tag=C9F05_04870
NZ_PYKE01000074.1	Protein Homology	CDS	28763	29920	.	-	0	ID=cds-WP_023245007.1;Parent=gene-C9F05_RS04800;Dbxref=GenBank:WP_023245007.1;Name=WP_023245007.1;Ontology_term=GO:0009102,GO:0008710;gbkey=CDS;gene=bioF;go_function=8-amino-7-oxononanoate synthase activity|0008710||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459773.1;locus_tag=C9F05_RS04800;product=8-amino-7-oxononanoate synthase;protein_id=WP_023245007.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	29917	30957	.	-	.	ID=gene-C9F05_RS04805;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=C9F05_RS04805;old_locus_tag=C9F05_04875
NZ_PYKE01000074.1	Protein Homology	CDS	29917	30957	.	-	0	ID=cds-WP_000090727.1;Parent=gene-C9F05_RS04805;Dbxref=GenBank:WP_000090727.1;Name=WP_000090727.1;Ontology_term=GO:0009102,GO:0004076,GO:0051536,GO:1904047;gbkey=CDS;gene=bioB;go_function=biotin synthase activity|0004076||IEA,iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459772.1;locus_tag=C9F05_RS04805;product=biotin synthase BioB;protein_id=WP_000090727.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	31044	32333	.	+	.	ID=gene-C9F05_RS04810;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=C9F05_RS04810;old_locus_tag=C9F05_04880
NZ_PYKE01000074.1	Protein Homology	CDS	31044	32333	.	+	0	ID=cds-WP_000205514.1;Parent=gene-C9F05_RS04810;Dbxref=GenBank:WP_000205514.1;Name=WP_000205514.1;Ontology_term=GO:0009102,GO:0004015,GO:0030170;gbkey=CDS;gene=bioA;go_function=adenosylmethionine-8-amino-7-oxononanoate transaminase activity|0004015||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459771.1;locus_tag=C9F05_RS04810;product=adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=WP_000205514.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	32391	32867	.	+	.	ID=gene-C9F05_RS04815;Name=C9F05_RS04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04815;old_locus_tag=C9F05_04885
NZ_PYKE01000074.1	Protein Homology	CDS	32391	32867	.	+	0	ID=cds-WP_000767403.1;Parent=gene-C9F05_RS04815;Dbxref=GenBank:WP_000767403.1;Name=WP_000767403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459770.1;locus_tag=C9F05_RS04815;product=kinase inhibitor;protein_id=WP_000767403.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	32952	34472	.	-	.	ID=gene-C9F05_RS04820;Name=hutH;gbkey=Gene;gene=hutH;gene_biotype=protein_coding;locus_tag=C9F05_RS04820;old_locus_tag=C9F05_04890
NZ_PYKE01000074.1	Protein Homology	CDS	32952	34472	.	-	0	ID=cds-WP_135370071.1;Parent=gene-C9F05_RS04820;Dbxref=GenBank:WP_135370071.1;Name=WP_135370071.1;Ontology_term=GO:0006548,GO:0004397,GO:0005737;gbkey=CDS;gene=hutH;go_component=cytoplasm|0005737||IEA;go_function=histidine ammonia-lyase activity|0004397||IEA;go_process=L-histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459769.1;locus_tag=C9F05_RS04820;product=histidine ammonia-lyase;protein_id=WP_135370071.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	34474	36159	.	-	.	ID=gene-C9F05_RS04825;Name=hutU;gbkey=Gene;gene=hutU;gene_biotype=protein_coding;locus_tag=C9F05_RS04825;old_locus_tag=C9F05_04895
NZ_PYKE01000074.1	Protein Homology	CDS	34474	36159	.	-	0	ID=cds-WP_001115209.1;Parent=gene-C9F05_RS04825;Dbxref=GenBank:WP_001115209.1;Name=WP_001115209.1;Ontology_term=GO:0006548,GO:0016153;gbkey=CDS;gene=hutU;go_function=urocanate hydratase activity|0016153||IEA;go_process=L-histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441920.1;locus_tag=C9F05_RS04825;product=urocanate hydratase;protein_id=WP_001115209.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	36356	37081	.	-	.	ID=gene-C9F05_RS04830;Name=C9F05_RS04830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04830;old_locus_tag=C9F05_04900
NZ_PYKE01000074.1	Protein Homology	CDS	36356	37081	.	-	0	ID=cds-WP_000287413.1;Parent=gene-C9F05_RS04830;Dbxref=GenBank:WP_000287413.1;Name=WP_000287413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459768.1;locus_tag=C9F05_RS04830;product=histidine utilization repressor;protein_id=WP_000287413.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	37126	38067	.	-	.	ID=gene-C9F05_RS04835;Name=hutG;gbkey=Gene;gene=hutG;gene_biotype=protein_coding;locus_tag=C9F05_RS04835;old_locus_tag=C9F05_04905
NZ_PYKE01000074.1	Protein Homology	CDS	37126	38067	.	-	0	ID=cds-WP_001616913.1;Parent=gene-C9F05_RS04835;Dbxref=GenBank:WP_001616913.1;Name=WP_001616913.1;Ontology_term=GO:0019556,GO:0050415;gbkey=CDS;gene=hutG;go_function=formimidoylglutamase activity|0050415||IEA;go_process=L-histidine catabolic process to glutamate and formamide|0019556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459767.1;locus_tag=C9F05_RS04835;product=formimidoylglutamase;protein_id=WP_001616913.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	38064	39287	.	-	.	ID=gene-C9F05_RS04840;Name=hutI;gbkey=Gene;gene=hutI;gene_biotype=protein_coding;locus_tag=C9F05_RS04840;old_locus_tag=C9F05_04910
NZ_PYKE01000074.1	Protein Homology	CDS	38064	39287	.	-	0	ID=cds-WP_135370073.1;Parent=gene-C9F05_RS04840;Dbxref=GenBank:WP_135370073.1;Name=WP_135370073.1;Ontology_term=GO:0019556,GO:0016812,GO:0050480,GO:0005737;gbkey=CDS;gene=hutI;go_component=cytoplasm|0005737||IEA;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides|0016812||IEA,imidazolonepropionase activity|0050480||IEA;go_process=L-histidine catabolic process to glutamate and formamide|0019556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459766.1;locus_tag=C9F05_RS04840;product=imidazolonepropionase;protein_id=WP_135370073.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	39525	40808	.	+	.	ID=gene-C9F05_RS04845;Name=C9F05_RS04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04845;old_locus_tag=C9F05_04915
NZ_PYKE01000074.1	Protein Homology	CDS	39525	40808	.	+	0	ID=cds-WP_001094766.1;Parent=gene-C9F05_RS04845;Dbxref=GenBank:WP_001094766.1;Name=WP_001094766.1;Ontology_term=GO:0042545,GO:0030599;gbkey=CDS;go_function=pectinesterase activity|0030599||IEA;go_process=cell wall modification|0042545||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459765.1;locus_tag=C9F05_RS04845;product=putative acyl-CoA thioester hydrolase;protein_id=WP_001094766.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	40952	41947	.	-	.	ID=gene-C9F05_RS04850;Name=pgl;gbkey=Gene;gene=pgl;gene_biotype=protein_coding;gene_synonym=ybhE;locus_tag=C9F05_RS04850;old_locus_tag=C9F05_04920
NZ_PYKE01000074.1	Protein Homology	CDS	40952	41947	.	-	0	ID=cds-WP_135370072.1;Parent=gene-C9F05_RS04850;Dbxref=GenBank:WP_135370072.1;Name=WP_135370072.1;Ontology_term=GO:0017057;gbkey=CDS;gene=pgl;go_function=6-phosphogluconolactonase activity|0017057||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459764.1;locus_tag=C9F05_RS04850;product=6-phosphogluconolactonase;protein_id=WP_135370072.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	42111	42929	.	+	.	ID=gene-C9F05_RS04855;Name=C9F05_RS04855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04855;old_locus_tag=C9F05_04925
NZ_PYKE01000074.1	Protein Homology	CDS	42111	42929	.	+	0	ID=cds-WP_023196373.1;Parent=gene-C9F05_RS04855;Dbxref=GenBank:WP_023196373.1;Name=WP_023196373.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459763.1;locus_tag=C9F05_RS04855;product=pyridoxal phosphatase;protein_id=WP_023196373.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	42930	43988	.	-	.	ID=gene-C9F05_RS04860;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=C9F05_RS04860;old_locus_tag=C9F05_04930
NZ_PYKE01000074.1	Protein Homology	CDS	42930	43988	.	-	0	ID=cds-WP_000891710.1;Parent=gene-C9F05_RS04860;Dbxref=GenBank:WP_000891710.1;Name=WP_000891710.1;Ontology_term=GO:0015689,GO:0005524,GO:0015098,GO:0016020;gbkey=CDS;gene=modC;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459762.1;locus_tag=C9F05_RS04860;product=molybdenum ABC transporter ATP-binding protein ModC;protein_id=WP_000891710.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	43991	44680	.	-	.	ID=gene-C9F05_RS04865;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;locus_tag=C9F05_RS04865;old_locus_tag=C9F05_04935
NZ_PYKE01000074.1	Protein Homology	CDS	43991	44680	.	-	0	ID=cds-WP_000604026.1;Parent=gene-C9F05_RS04865;Dbxref=GenBank:WP_000604026.1;Name=WP_000604026.1;Ontology_term=GO:0015689,GO:0015098,GO:0016020;gbkey=CDS;gene=modB;go_component=membrane|0016020||IEA;go_function=molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459761.1;locus_tag=C9F05_RS04865;product=molybdate ABC transporter permease subunit;protein_id=WP_000604026.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	44680	45453	.	-	.	ID=gene-C9F05_RS04870;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=C9F05_RS04870;old_locus_tag=C9F05_04940
NZ_PYKE01000074.1	Protein Homology	CDS	44680	45453	.	-	0	ID=cds-WP_000951416.1;Parent=gene-C9F05_RS04870;Dbxref=GenBank:WP_000951416.1;Name=WP_000951416.1;Ontology_term=GO:0015689;gbkey=CDS;gene=modA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459760.1;locus_tag=C9F05_RS04870;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_000951416.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	45620	45769	.	-	.	ID=gene-C9F05_RS04875;Name=C9F05_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04875;old_locus_tag=C9F05_04945
NZ_PYKE01000074.1	Protein Homology	CDS	45620	45769	.	-	0	ID=cds-WP_000891513.1;Parent=gene-C9F05_RS04875;Dbxref=GenBank:WP_000891513.1;Name=WP_000891513.1;Ontology_term=GO:1990961,GO:0042910,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459759.1;locus_tag=C9F05_RS04875;product=AcrZ family multidrug efflux pump-associated protein;protein_id=WP_000891513.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	45898	46686	.	+	.	ID=gene-C9F05_RS04880;Name=modE;gbkey=Gene;gene=modE;gene_biotype=protein_coding;locus_tag=C9F05_RS04880;old_locus_tag=C9F05_04950
NZ_PYKE01000074.1	Protein Homology	CDS	45898	46686	.	+	0	ID=cds-WP_001147416.1;Parent=gene-C9F05_RS04880;Dbxref=GenBank:WP_001147416.1;Name=WP_001147416.1;Ontology_term=GO:0006355,GO:0015689,GO:0003700,GO:0030151;gbkey=CDS;gene=modE;go_function=DNA-binding transcription factor activity|0003700||IEA,molybdenum ion binding|0030151||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459758.1;locus_tag=C9F05_RS04880;product=molybdenum-dependent transcriptional regulator;protein_id=WP_001147416.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	46754	48229	.	+	.	ID=gene-C9F05_RS04885;Name=modF;gbkey=Gene;gene=modF;gene_biotype=protein_coding;locus_tag=C9F05_RS04885;old_locus_tag=C9F05_04955
NZ_PYKE01000074.1	Protein Homology	CDS	46754	48229	.	+	0	ID=cds-WP_000096931.1;Parent=gene-C9F05_RS04885;Dbxref=GenBank:WP_000096931.1;Name=WP_000096931.1;Ontology_term=GO:0005524;gbkey=CDS;gene=modF;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459757.1;locus_tag=C9F05_RS04885;product=molybdate ABC transporter ATP-binding protein ModF;protein_id=WP_000096931.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	48400	49308	.	+	.	ID=gene-C9F05_RS04890;Name=C9F05_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04890;old_locus_tag=C9F05_04960
NZ_PYKE01000074.1	Protein Homology	CDS	48400	49308	.	+	0	ID=cds-WP_000885513.1;Parent=gene-C9F05_RS04890;Dbxref=GenBank:WP_000885513.1;Name=WP_000885513.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459756.1;locus_tag=C9F05_RS04890;product=DUF2167 domain-containing protein;protein_id=WP_000885513.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	49531	50547	.	+	.	ID=gene-C9F05_RS04895;Name=galE;gbkey=Gene;gene=galE;gene_biotype=protein_coding;locus_tag=C9F05_RS04895;old_locus_tag=C9F05_04965
NZ_PYKE01000074.1	Protein Homology	CDS	49531	50547	.	+	0	ID=cds-WP_001265465.1;Parent=gene-C9F05_RS04895;Dbxref=GenBank:WP_001265465.1;Name=WP_001265465.1;Ontology_term=GO:0006012,GO:0003978;gbkey=CDS;gene=galE;go_function=UDP-glucose 4-epimerase activity|0003978||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459755.1;locus_tag=C9F05_RS04895;product=UDP-glucose 4-epimerase GalE;protein_id=WP_001265465.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	50558	51604	.	+	.	ID=gene-C9F05_RS04900;Name=galT;gbkey=Gene;gene=galT;gene_biotype=protein_coding;locus_tag=C9F05_RS04900;old_locus_tag=C9F05_04970
NZ_PYKE01000074.1	Protein Homology	CDS	50558	51604	.	+	0	ID=cds-WP_000187471.1;Parent=gene-C9F05_RS04900;Dbxref=GenBank:WP_000187471.1;Name=WP_000187471.1;Ontology_term=GO:0006012,GO:0008108,GO:0008270;gbkey=CDS;gene=galT;go_function=UDP-glucose:hexose-1-phosphate uridylyltransferase activity|0008108||IEA,zinc ion binding|0008270||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459754.1;locus_tag=C9F05_RS04900;product=galactose-1-phosphate uridylyltransferase;protein_id=WP_000187471.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	51607	52755	.	+	.	ID=gene-C9F05_RS04905;Name=galK;gbkey=Gene;gene=galK;gene_biotype=protein_coding;locus_tag=C9F05_RS04905;old_locus_tag=C9F05_04975
NZ_PYKE01000074.1	Protein Homology	CDS	51607	52755	.	+	0	ID=cds-WP_001049366.1;Parent=gene-C9F05_RS04905;Dbxref=GenBank:WP_001049366.1;Name=WP_001049366.1;Ontology_term=GO:0006012,GO:0046835,GO:0004335,GO:0005524;gbkey=CDS;gene=galK;go_function=galactokinase activity|0004335||IEA,ATP binding|0005524||IEA;go_process=galactose metabolic process|0006012||IEA,carbohydrate phosphorylation|0046835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001713229.1;locus_tag=C9F05_RS04905;product=galactokinase;protein_id=WP_001049366.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	52749	53789	.	+	.	ID=gene-C9F05_RS04910;Name=galM;gbkey=Gene;gene=galM;gene_biotype=protein_coding;locus_tag=C9F05_RS04910;old_locus_tag=C9F05_04980
NZ_PYKE01000074.1	Protein Homology	CDS	52749	53789	.	+	0	ID=cds-WP_000931428.1;Parent=gene-C9F05_RS04910;Dbxref=GenBank:WP_000931428.1;Name=WP_000931428.1;Ontology_term=GO:0006012,GO:0004034;gbkey=CDS;gene=galM;go_function=aldose 1-epimerase activity|0004034||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459752.1;locus_tag=C9F05_RS04910;product=galactose-1-epimerase;protein_id=WP_000931428.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	54013	54765	.	+	.	ID=gene-C9F05_RS04915;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=C9F05_RS04915;old_locus_tag=C9F05_04990
NZ_PYKE01000074.1	Protein Homology	CDS	54013	54765	.	+	0	ID=cds-WP_000301554.1;Parent=gene-C9F05_RS04915;Dbxref=GenBank:WP_000301554.1;Name=WP_000301554.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmA;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000301556.1;locus_tag=C9F05_RS04915;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_000301554.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	54856	55632	.	-	.	ID=gene-C9F05_RS04920;Name=C9F05_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04920;old_locus_tag=C9F05_04995
NZ_PYKE01000074.1	Protein Homology	CDS	54856	55632	.	-	0	ID=cds-WP_001214709.1;Parent=gene-C9F05_RS04920;Dbxref=GenBank:WP_001214709.1;Name=WP_001214709.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459750.1;locus_tag=C9F05_RS04920;product=ABC transporter ATP-binding protein;protein_id=WP_001214709.1;transl_table=11
NZ_PYKE01000074.1	RefSeq	gene	55632	56711	.	-	.	ID=gene-C9F05_RS04925;Name=C9F05_RS04925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04925;old_locus_tag=C9F05_05000
NZ_PYKE01000074.1	Protein Homology	CDS	55632	56711	.	-	0	ID=cds-WP_000128337.1;Parent=gene-C9F05_RS04925;Dbxref=GenBank:WP_000128337.1;Name=WP_000128337.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459749.1;locus_tag=C9F05_RS04925;product=FecCD family ABC transporter permease;protein_id=WP_000128337.1;transl_table=11
##sequence-region NZ_PYKE01000168.1 1 299
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000168.1	RefSeq	region	1	299	.	+	.	ID=NZ_PYKE01000168.1:1..299;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
##sequence-region NZ_PYKE01000315.1 1 15126
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000315.1	RefSeq	region	1	15126	.	+	.	ID=NZ_PYKE01000315.1:1..15126;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000315.1	RefSeq	gene	119	523	.	+	.	ID=gene-C9F05_RS21485;Name=C9F05_RS21485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21485;old_locus_tag=C9F05_22070
NZ_PYKE01000315.1	Protein Homology	CDS	119	523	.	+	0	ID=cds-WP_001258093.1;Parent=gene-C9F05_RS21485;Dbxref=GenBank:WP_001258093.1;Name=WP_001258093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459016.1;locus_tag=C9F05_RS21485;product=DUF2541 family protein;protein_id=WP_001258093.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	559	1272	.	+	.	ID=gene-C9F05_RS21490;Name=msyB;gbkey=Gene;gene=msyB;gene_biotype=protein_coding;locus_tag=C9F05_RS21490;old_locus_tag=C9F05_22075
NZ_PYKE01000315.1	Protein Homology	CDS	559	1272	.	+	0	ID=cds-WP_001103477.1;Parent=gene-C9F05_RS21490;Dbxref=GenBank:WP_001103477.1;Name=WP_001103477.1;gbkey=CDS;gene=msyB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459015.1;locus_tag=C9F05_RS21490;product=acidic protein MsyB;protein_id=WP_001103477.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	1422	1988	.	+	.	ID=gene-C9F05_RS21495;Name=satP;gbkey=Gene;gene=satP;gene_biotype=protein_coding;locus_tag=C9F05_RS21495;old_locus_tag=C9F05_22080
NZ_PYKE01000315.1	Protein Homology	CDS	1422	1988	.	+	0	ID=cds-WP_000528525.1;Parent=gene-C9F05_RS21495;Dbxref=GenBank:WP_000528525.1;Name=WP_000528525.1;Ontology_term=GO:0016020;gbkey=CDS;gene=satP;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459014.1;locus_tag=C9F05_RS21495;product=acetate uptake transporter;protein_id=WP_000528525.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	2045	2635	.	-	.	ID=gene-C9F05_RS21500;Name=mog;gbkey=Gene;gene=mog;gene_biotype=protein_coding;locus_tag=C9F05_RS21500;old_locus_tag=C9F05_22085
NZ_PYKE01000315.1	Protein Homology	CDS	2045	2635	.	-	0	ID=cds-WP_000380373.1;Parent=gene-C9F05_RS21500;Dbxref=GenBank:WP_000380373.1;Name=WP_000380373.1;Ontology_term=GO:0006777;gbkey=CDS;gene=mog;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000380375.1;locus_tag=C9F05_RS21500;product=molybdopterin adenylyltransferase;protein_id=WP_000380373.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	2746	3699	.	-	.	ID=gene-C9F05_RS21505;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=C9F05_RS21505;old_locus_tag=C9F05_22090
NZ_PYKE01000315.1	Protein Homology	CDS	2746	3699	.	-	0	ID=cds-WP_000130175.1;Parent=gene-C9F05_RS21505;Dbxref=GenBank:WP_000130175.1;Name=WP_000130175.1;Ontology_term=GO:0006098,GO:0004801,GO:0005737;gbkey=CDS;gene=tal;go_component=cytoplasm|0005737||IEA;go_function=transaldolase activity|0004801||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459012.1;locus_tag=C9F05_RS21505;product=transaldolase;protein_id=WP_000130175.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	3968	5398	.	+	.	ID=gene-C9F05_RS21510;Name=C9F05_RS21510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21510;old_locus_tag=C9F05_22095
NZ_PYKE01000315.1	Protein Homology	CDS	3968	5398	.	+	0	ID=cds-WP_001113807.1;Parent=gene-C9F05_RS21510;Dbxref=GenBank:WP_001113807.1;Name=WP_001113807.1;Ontology_term=GO:0006814,GO:0006865,GO:0005283,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid:sodium symporter activity|0005283||IEA,symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459011.1;locus_tag=C9F05_RS21510;product=alanine/glycine:cation symporter family protein;protein_id=WP_001113807.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	5477	6250	.	+	.	ID=gene-C9F05_RS21515;Name=yaaA;gbkey=Gene;gene=yaaA;gene_biotype=protein_coding;locus_tag=C9F05_RS21515;old_locus_tag=C9F05_22100
NZ_PYKE01000315.1	Protein Homology	CDS	5477	6250	.	+	0	ID=cds-WP_000906175.1;Parent=gene-C9F05_RS21515;Dbxref=GenBank:WP_000906175.1;Name=WP_000906175.1;gbkey=CDS;gene=yaaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459010.1;locus_tag=C9F05_RS21515;product=peroxide stress protein YaaA;protein_id=WP_000906175.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	6344	7630	.	-	.	ID=gene-C9F05_RS21520;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=C9F05_RS21520;old_locus_tag=C9F05_22105
NZ_PYKE01000315.1	Protein Homology	CDS	6344	7630	.	-	0	ID=cds-WP_000781110.1;Parent=gene-C9F05_RS21520;Dbxref=GenBank:WP_000781110.1;Name=WP_000781110.1;Ontology_term=GO:0009088,GO:0004795;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459009.1;locus_tag=C9F05_RS21520;product=threonine synthase;protein_id=WP_000781110.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	7634	8563	.	-	.	ID=gene-C9F05_RS21525;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;locus_tag=C9F05_RS21525;old_locus_tag=C9F05_22110
NZ_PYKE01000315.1	Protein Homology	CDS	7634	8563	.	-	0	ID=cds-WP_000241685.1;Parent=gene-C9F05_RS21525;Dbxref=GenBank:WP_000241685.1;Name=WP_000241685.1;Ontology_term=GO:0009088,GO:0004413,GO:0005524;gbkey=CDS;gene=thrB;go_function=homoserine kinase activity|0004413||IEA,ATP binding|0005524||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459008.1;locus_tag=C9F05_RS21525;product=homoserine kinase;protein_id=WP_000241685.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	8565	11027	.	-	.	ID=gene-C9F05_RS21530;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=C9F05_RS21530;old_locus_tag=C9F05_22115
NZ_PYKE01000315.1	Protein Homology	CDS	8565	11027	.	-	0	ID=cds-WP_001264677.1;Parent=gene-C9F05_RS21530;Dbxref=GenBank:WP_001264677.1;Name=WP_001264677.1;Ontology_term=GO:0008652,GO:0009067,GO:0004072,GO:0004412,GO:0050661;gbkey=CDS;gene=thrA;go_function=aspartate kinase activity|0004072||IEA,homoserine dehydrogenase activity|0004412||IEA,NADP binding|0050661||IEA;go_process=amino acid biosynthetic process|0008652||IEA,aspartate family amino acid biosynthetic process|0009067||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124053.1;locus_tag=C9F05_RS21530;product=bifunctional aspartate kinase/homoserine dehydrogenase I;protein_id=WP_001264677.1;transl_table=11
NZ_PYKE01000315.1	cmsearch	sequence_feature	11053	11173	.	-	.	ID=id-NZ_PYKE01000315.1:11053..11173;Dbxref=RFAM:RF00506;Note=Thr leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYKE01000315.1	RefSeq	gene	11109	11174	.	-	.	ID=gene-C9F05_RS21535;Name=thrL;gbkey=Gene;gene=thrL;gene_biotype=protein_coding;locus_tag=C9F05_RS21535;old_locus_tag=C9F05_22120
NZ_PYKE01000315.1	Protein Homology	CDS	11109	11174	.	-	0	ID=cds-WP_001575544.1;Parent=gene-C9F05_RS21535;Dbxref=GenBank:WP_001575544.1;Name=WP_001575544.1;Ontology_term=GO:0009088,GO:0031554,GO:0031556;gbkey=CDS;gene=thrL;go_process=threonine biosynthetic process|0009088||IEA,regulation of termination of DNA-templated transcription|0031554||IEA,transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459006.1;locus_tag=C9F05_RS21535;product=thr operon leader peptide;protein_id=WP_001575544.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	11388	12074	.	-	.	ID=gene-C9F05_RS21540;Name=C9F05_RS21540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21540;old_locus_tag=C9F05_22125
NZ_PYKE01000315.1	Protein Homology	CDS	11388	12074	.	-	0	ID=cds-WP_001266780.1;Parent=gene-C9F05_RS21540;Dbxref=GenBank:WP_001266780.1;Name=WP_001266780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463456.1;locus_tag=C9F05_RS21540;product=tRNA/rRNA methyltransferase;protein_id=WP_001266780.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	12474	12614	.	-	.	ID=gene-C9F05_RS21545;Name=yjjY;gbkey=Gene;gene=yjjY;gene_biotype=protein_coding;locus_tag=C9F05_RS21545;old_locus_tag=C9F05_22130
NZ_PYKE01000315.1	Protein Homology	CDS	12474	12614	.	-	0	ID=cds-WP_001541509.1;Parent=gene-C9F05_RS21545;Dbxref=GenBank:WP_001541509.1;Name=WP_001541509.1;gbkey=CDS;gene=yjjY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463455.1;locus_tag=C9F05_RS21545;product=protein YjjY;protein_id=WP_001541509.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	12710	13426	.	+	.	ID=gene-C9F05_RS21550;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=protein_coding;locus_tag=C9F05_RS21550;old_locus_tag=C9F05_22135
NZ_PYKE01000315.1	Protein Homology	CDS	12710	13426	.	+	0	ID=cds-WP_001194359.1;Parent=gene-C9F05_RS21550;Dbxref=GenBank:WP_001194359.1;Name=WP_001194359.1;gbkey=CDS;gene=arcA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003621071.1;locus_tag=C9F05_RS21550;product=two-component system response regulator ArcA;protein_id=WP_001194359.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	13693	14007	.	+	.	ID=gene-C9F05_RS21555;Name=C9F05_RS21555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21555;old_locus_tag=C9F05_22140
NZ_PYKE01000315.1	Protein Homology	CDS	13693	14007	.	+	0	ID=cds-WP_000749515.1;Parent=gene-C9F05_RS21555;Dbxref=GenBank:WP_000749515.1;Name=WP_000749515.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463453.1;locus_tag=C9F05_RS21555;product=hypothetical protein;protein_id=WP_000749515.1;transl_table=11
NZ_PYKE01000315.1	RefSeq	gene	14392	15063	.	+	.	ID=gene-C9F05_RS21560;Name=C9F05_RS21560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21560;old_locus_tag=C9F05_22145
NZ_PYKE01000315.1	Protein Homology	CDS	14392	15063	.	+	0	ID=cds-WP_000811635.1;Parent=gene-C9F05_RS21560;Dbxref=GenBank:WP_000811635.1;Name=WP_000811635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463452.1;locus_tag=C9F05_RS21560;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_000811635.1;transl_table=11
##sequence-region NZ_PYKE01000249.1 1 293
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000249.1	RefSeq	region	1	293	.	+	.	ID=NZ_PYKE01000249.1:1..293;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000249.1	RefSeq	gene	127	202	.	-	.	ID=gene-C9F05_RS16200;Name=C9F05_RS16200;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS16200;old_locus_tag=C9F05_16655
NZ_PYKE01000249.1	tRNAscan-SE	tRNA	127	202	.	-	.	ID=rna-C9F05_RS16200;Parent=gene-C9F05_RS16200;anticodon=(pos:complement(166..168));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS16200;product=tRNA-Glu
NZ_PYKE01000249.1	tRNAscan-SE	exon	127	202	.	-	.	ID=exon-C9F05_RS16200-1;Parent=rna-C9F05_RS16200;anticodon=(pos:complement(166..168));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS16200;product=tRNA-Glu
##sequence-region NZ_PYKE01000060.1 1 15054
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000060.1	RefSeq	region	1	15054	.	+	.	ID=NZ_PYKE01000060.1:1..15054;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000060.1	cmsearch	riboswitch	48	139	.	+	.	ID=id-NZ_PYKE01000060.1:48..139;Dbxref=RFAM:RF00080;Note=yybP-ykoY riboswitch is a manganese riboswitch that directly binds Mn;bound_moiety=manganese;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYKE01000060.1	RefSeq	gene	251	817	.	+	.	ID=gene-C9F05_RS03625;Name=mntP;gbkey=Gene;gene=mntP;gene_biotype=protein_coding;locus_tag=C9F05_RS03625;old_locus_tag=C9F05_03695
NZ_PYKE01000060.1	Protein Homology	CDS	251	817	.	+	0	ID=cds-WP_001518359.1;Parent=gene-C9F05_RS03625;Dbxref=GenBank:WP_001518359.1;Name=WP_001518359.1;gbkey=CDS;gene=mntP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416335.4;locus_tag=C9F05_RS03625;product=manganese efflux pump MntP;protein_id=WP_001518359.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	814	1623	.	-	.	ID=gene-C9F05_RS03630;Name=rlmA;gbkey=Gene;gene=rlmA;gene_biotype=protein_coding;locus_tag=C9F05_RS03630;old_locus_tag=C9F05_03700
NZ_PYKE01000060.1	Protein Homology	CDS	814	1623	.	-	0	ID=cds-WP_023193489.1;Parent=gene-C9F05_RS03630;Dbxref=GenBank:WP_023193489.1;Name=WP_023193489.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmA;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460791.1;locus_tag=C9F05_RS03630;product=23S rRNA (guanine(745)-N(1))-methyltransferase;protein_id=WP_023193489.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	1689	3434	.	-	.	ID=gene-C9F05_RS03635;Name=ftsI;gbkey=Gene;gene=ftsI;gene_biotype=protein_coding;locus_tag=C9F05_RS03635;old_locus_tag=C9F05_03705
NZ_PYKE01000060.1	Protein Homology	CDS	1689	3434	.	-	0	ID=cds-WP_000730317.1;Parent=gene-C9F05_RS03635;Dbxref=GenBank:WP_000730317.1;Name=WP_000730317.1;Ontology_term=GO:0009252,GO:0051301,GO:0008658,GO:0008955,GO:0005886;gbkey=CDS;gene=ftsI;go_component=plasma membrane|0005886||IEA;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460792.1;locus_tag=C9F05_RS03635;product=peptidoglycan glycosyltransferase FtsI;protein_id=WP_000730317.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	3654	3863	.	-	.	ID=gene-C9F05_RS03640;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=C9F05_RS03640;old_locus_tag=C9F05_03710
NZ_PYKE01000060.1	Protein Homology	CDS	3654	3863	.	-	0	ID=cds-WP_001062678.1;Parent=gene-C9F05_RS03640;Dbxref=GenBank:WP_001062678.1;Name=WP_001062678.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310560.1;locus_tag=C9F05_RS03640;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_001062678.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	3876	4019	.	-	.	ID=gene-C9F05_RS03645;Name=C9F05_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03645;old_locus_tag=C9F05_03715
NZ_PYKE01000060.1	Protein Homology	CDS	3876	4019	.	-	0	ID=cds-WP_001537930.1;Parent=gene-C9F05_RS03645;Dbxref=GenBank:WP_001537930.1;Name=WP_001537930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460794.1;locus_tag=C9F05_RS03645;product=DUF2627 domain-containing protein;protein_id=WP_001537930.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	4668	4955	.	-	.	ID=gene-C9F05_RS03650;Name=C9F05_RS03650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03650;old_locus_tag=C9F05_03720
NZ_PYKE01000060.1	Protein Homology	CDS	4668	4955	.	-	0	ID=cds-WP_001667129.1;Parent=gene-C9F05_RS03650;Dbxref=GenBank:WP_001667129.1;Name=WP_001667129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460795.1;locus_tag=C9F05_RS03650;product=YebO family protein;protein_id=WP_001667129.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	5026	5169	.	-	.	ID=gene-C9F05_RS03655;Name=mgrB;gbkey=Gene;gene=mgrB;gene_biotype=protein_coding;locus_tag=C9F05_RS03655;old_locus_tag=C9F05_03725
NZ_PYKE01000060.1	Protein Homology	CDS	5026	5169	.	-	0	ID=cds-WP_000714547.1;Parent=gene-C9F05_RS03655;Dbxref=GenBank:WP_000714547.1;Name=WP_000714547.1;gbkey=CDS;gene=mgrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460796.1;locus_tag=C9F05_RS03655;product=PhoP/PhoQ regulator MgrB;protein_id=WP_000714547.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	5327	5566	.	+	.	ID=gene-C9F05_RS03660;Name=yobH;gbkey=Gene;gene=yobH;gene_biotype=protein_coding;locus_tag=C9F05_RS03660;old_locus_tag=C9F05_03730
NZ_PYKE01000060.1	Protein Homology	CDS	5327	5566	.	+	0	ID=cds-WP_001236777.1;Parent=gene-C9F05_RS03660;Dbxref=GenBank:WP_001236777.1;Name=WP_001236777.1;gbkey=CDS;gene=yobH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460797.1;locus_tag=C9F05_RS03660;product=invasion protein YobH;protein_id=WP_001236777.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	5778	6569	.	-	.	ID=gene-C9F05_RS03665;Name=kdgR;gbkey=Gene;gene=kdgR;gene_biotype=protein_coding;locus_tag=C9F05_RS03665;old_locus_tag=C9F05_03735
NZ_PYKE01000060.1	Protein Homology	CDS	5778	6569	.	-	0	ID=cds-WP_001262197.1;Parent=gene-C9F05_RS03665;Dbxref=GenBank:WP_001262197.1;Name=WP_001262197.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=kdgR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460798.1;locus_tag=C9F05_RS03665;product=DNA-binding transcriptional regulator KdgR;protein_id=WP_001262197.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	6745	8118	.	+	.	ID=gene-C9F05_RS03670;Name=C9F05_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03670;old_locus_tag=C9F05_03740
NZ_PYKE01000060.1	Protein Homology	CDS	6745	8118	.	+	0	ID=cds-WP_017441970.1;Parent=gene-C9F05_RS03670;Dbxref=GenBank:WP_017441970.1;Name=WP_017441970.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441970.1;locus_tag=C9F05_RS03670;product=MFS transporter;protein_id=WP_017441970.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	8166	9047	.	-	.	ID=gene-C9F05_RS03675;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=C9F05_RS03675;old_locus_tag=C9F05_03745
NZ_PYKE01000060.1	Protein Homology	CDS	8166	9047	.	-	0	ID=cds-WP_000984498.1;Parent=gene-C9F05_RS03675;Dbxref=GenBank:WP_000984498.1;Name=WP_000984498.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=htpX;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014229823.1;locus_tag=C9F05_RS03675;product=protease HtpX;protein_id=WP_000984498.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	9241	11289	.	-	.	ID=gene-C9F05_RS03680;Name=prc;gbkey=Gene;gene=prc;gene_biotype=protein_coding;gene_synonym=tsp;locus_tag=C9F05_RS03680;old_locus_tag=C9F05_03750
NZ_PYKE01000060.1	Protein Homology	CDS	9241	11289	.	-	0	ID=cds-WP_001091237.1;Parent=gene-C9F05_RS03680;Dbxref=GenBank:WP_001091237.1;Name=WP_001091237.1;Ontology_term=GO:0006508,GO:0005515,GO:0008236;gbkey=CDS;gene=prc;go_function=protein binding|0005515||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460801.1;locus_tag=C9F05_RS03680;product=carboxy terminal-processing peptidase;protein_id=WP_001091237.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	11309	11995	.	-	.	ID=gene-C9F05_RS03685;Name=proQ;gbkey=Gene;gene=proQ;gene_biotype=protein_coding;locus_tag=C9F05_RS03685;old_locus_tag=C9F05_03755
NZ_PYKE01000060.1	Protein Homology	CDS	11309	11995	.	-	0	ID=cds-WP_000431401.1;Parent=gene-C9F05_RS03685;Dbxref=GenBank:WP_000431401.1;Name=WP_000431401.1;Ontology_term=GO:0010608,GO:0003723,GO:0033592,GO:0034057;gbkey=CDS;gene=proQ;go_function=RNA binding|0003723||IEA,RNA strand annealing activity|0033592||IEA,RNA strand-exchange activity|0034057||IEA;go_process=post-transcriptional regulation of gene expression|0010608||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460802.1;locus_tag=C9F05_RS03685;product=RNA chaperone ProQ;protein_id=WP_000431401.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	12093	12590	.	-	.	ID=gene-C9F05_RS03690;Name=C9F05_RS03690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03690;old_locus_tag=C9F05_03760
NZ_PYKE01000060.1	Protein Homology	CDS	12093	12590	.	-	0	ID=cds-WP_001518229.1;Parent=gene-C9F05_RS03690;Dbxref=GenBank:WP_001518229.1;Name=WP_001518229.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707287.1;locus_tag=C9F05_RS03690;product=GAF domain-containing protein;protein_id=WP_001518229.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	12719	14002	.	+	.	ID=gene-C9F05_RS03695;Name=yebS;gbkey=Gene;gene=yebS;gene_biotype=protein_coding;locus_tag=C9F05_RS03695;old_locus_tag=C9F05_03765
NZ_PYKE01000060.1	Protein Homology	CDS	12719	14002	.	+	0	ID=cds-WP_079826734.1;Parent=gene-C9F05_RS03695;Dbxref=GenBank:WP_079826734.1;Name=WP_079826734.1;gbkey=CDS;gene=yebS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460804.1;locus_tag=C9F05_RS03695;product=membrane integrity lipid transport subunit YebS;protein_id=WP_079826734.1;transl_table=11
NZ_PYKE01000060.1	RefSeq	gene	13971	15054	.	+	.	ID=gene-C9F05_RS03700;Name=C9F05_RS03700;end_range=15054,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03700;old_locus_tag=C9F05_03770;partial=true
NZ_PYKE01000060.1	Protein Homology	CDS	13971	15054	.	+	0	ID=cds-WP_167854898.1;Parent=gene-C9F05_RS03700;Dbxref=GenBank:WP_167854898.1;Name=WP_167854898.1;Ontology_term=GO:0016020;end_range=15054,.;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310571.2;locus_tag=C9F05_RS03700;partial=true;product=PqiB family protein;protein_id=WP_167854898.1;transl_table=11
##sequence-region NZ_PYKE01000287.1 1 282
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000287.1	RefSeq	region	1	282	.	+	.	ID=NZ_PYKE01000287.1:1..282;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
##sequence-region NZ_PYKE01000063.1 1 15048
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000063.1	RefSeq	region	1	15048	.	+	.	ID=NZ_PYKE01000063.1:1..15048;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000063.1	RefSeq	gene	151	1317	.	+	.	ID=gene-C9F05_RS03960;Name=ugd;gbkey=Gene;gene=ugd;gene_biotype=protein_coding;locus_tag=C9F05_RS03960;old_locus_tag=C9F05_04030
NZ_PYKE01000063.1	Protein Homology	CDS	151	1317	.	+	0	ID=cds-WP_000704825.1;Parent=gene-C9F05_RS03960;Dbxref=GenBank:WP_000704825.1;Name=WP_000704825.1;Ontology_term=GO:0000271,GO:0003979;gbkey=CDS;gene=ugd;go_function=UDP-glucose 6-dehydrogenase activity|0003979||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461025.1;locus_tag=C9F05_RS03960;product=UDP-glucose 6-dehydrogenase;protein_id=WP_000704825.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	1460	2443	.	+	.	ID=gene-C9F05_RS03965;Name=wzzB;gbkey=Gene;gene=wzzB;gene_biotype=protein_coding;locus_tag=C9F05_RS03965;old_locus_tag=C9F05_04035
NZ_PYKE01000063.1	Protein Homology	CDS	1460	2443	.	+	0	ID=cds-WP_000215255.1;Parent=gene-C9F05_RS03965;Dbxref=GenBank:WP_000215255.1;Name=WP_000215255.1;Ontology_term=GO:0009103;gbkey=CDS;gene=wzzB;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461024.1;locus_tag=C9F05_RS03965;product=LPS O-antigen chain length determinant protein WzzB;protein_id=WP_000215255.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	2524	3135	.	-	.	ID=gene-C9F05_RS03970;Name=hisIE;gbkey=Gene;gene=hisIE;gene_biotype=protein_coding;locus_tag=C9F05_RS03970;old_locus_tag=C9F05_04040
NZ_PYKE01000063.1	Protein Homology	CDS	2524	3135	.	-	0	ID=cds-WP_000954848.1;Parent=gene-C9F05_RS03970;Dbxref=GenBank:WP_000954848.1;Name=WP_000954848.1;Ontology_term=GO:0000105,GO:0004635,GO:0004636;gbkey=CDS;gene=hisIE;go_function=phosphoribosyl-AMP cyclohydrolase activity|0004635||IEA,phosphoribosyl-ATP diphosphatase activity|0004636||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461023.1;locus_tag=C9F05_RS03970;product=bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE;protein_id=WP_000954848.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	3129	3905	.	-	.	ID=gene-C9F05_RS03975;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=C9F05_RS03975;old_locus_tag=C9F05_04045
NZ_PYKE01000063.1	Protein Homology	CDS	3129	3905	.	-	0	ID=cds-WP_135370047.1;Parent=gene-C9F05_RS03975;Dbxref=GenBank:WP_135370047.1;Name=WP_135370047.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisF;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461022.1;locus_tag=C9F05_RS03975;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_135370047.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	3887	4624	.	-	.	ID=gene-C9F05_RS03980;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=C9F05_RS03980;old_locus_tag=C9F05_04050
NZ_PYKE01000063.1	Protein Homology	CDS	3887	4624	.	-	0	ID=cds-WP_000586406.1;Parent=gene-C9F05_RS03980;Dbxref=GenBank:WP_000586406.1;Name=WP_000586406.1;Ontology_term=GO:0000105,GO:0003949;gbkey=CDS;gene=hisA;go_function=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|0003949||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461021.1;locus_tag=C9F05_RS03980;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase;protein_id=WP_000586406.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	4624	5214	.	-	.	ID=gene-C9F05_RS03985;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=C9F05_RS03985;old_locus_tag=C9F05_04055
NZ_PYKE01000063.1	Protein Homology	CDS	4624	5214	.	-	0	ID=cds-WP_135370048.1;Parent=gene-C9F05_RS03985;Dbxref=GenBank:WP_135370048.1;Name=WP_135370048.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisH;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128083.1;locus_tag=C9F05_RS03985;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_135370048.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	5214	6281	.	-	.	ID=gene-C9F05_RS03990;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=C9F05_RS03990;old_locus_tag=C9F05_04060
NZ_PYKE01000063.1	Protein Homology	CDS	5214	6281	.	-	0	ID=cds-WP_000080044.1;Parent=gene-C9F05_RS03990;Dbxref=GenBank:WP_000080044.1;Name=WP_000080044.1;Ontology_term=GO:0000105,GO:0004401,GO:0004424;gbkey=CDS;gene=hisB;go_function=histidinol-phosphatase activity|0004401||IEA,imidazoleglycerol-phosphate dehydratase activity|0004424||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461019.1;locus_tag=C9F05_RS03990;product=bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;protein_id=WP_000080044.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	6278	7357	.	-	.	ID=gene-C9F05_RS03995;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=C9F05_RS03995;old_locus_tag=C9F05_04065
NZ_PYKE01000063.1	Protein Homology	CDS	6278	7357	.	-	0	ID=cds-WP_000102715.1;Parent=gene-C9F05_RS03995;Dbxref=GenBank:WP_000102715.1;Name=WP_000102715.1;Ontology_term=GO:0000105,GO:0004400;gbkey=CDS;gene=hisC;go_function=histidinol-phosphate transaminase activity|0004400||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461018.1;locus_tag=C9F05_RS03995;product=histidinol-phosphate transaminase;protein_id=WP_000102715.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	7354	8658	.	-	.	ID=gene-C9F05_RS04000;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=C9F05_RS04000;old_locus_tag=C9F05_04070
NZ_PYKE01000063.1	Protein Homology	CDS	7354	8658	.	-	0	ID=cds-WP_000009622.1;Parent=gene-C9F05_RS04000;Dbxref=GenBank:WP_000009622.1;Name=WP_000009622.1;Ontology_term=GO:0000105,GO:0004399,GO:0046872,GO:0051287;gbkey=CDS;gene=hisD;go_function=histidinol dehydrogenase activity|0004399||IEA,metal ion binding|0046872||IEA,NAD binding|0051287||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461017.1;locus_tag=C9F05_RS04000;product=histidinol dehydrogenase;protein_id=WP_000009622.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	8761	9660	.	-	.	ID=gene-C9F05_RS04005;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=C9F05_RS04005;old_locus_tag=C9F05_04075
NZ_PYKE01000063.1	Protein Homology	CDS	8761	9660	.	-	0	ID=cds-WP_000886604.1;Parent=gene-C9F05_RS04005;Dbxref=GenBank:WP_000886604.1;Name=WP_000886604.1;Ontology_term=GO:0000105,GO:0003879,GO:0005737;gbkey=CDS;gene=hisG;go_component=cytoplasm|0005737||IEA;go_function=ATP phosphoribosyltransferase activity|0003879||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128078.1;locus_tag=C9F05_RS04005;product=ATP phosphoribosyltransferase;protein_id=WP_000886604.1;transl_table=11
NZ_PYKE01000063.1	cmsearch	sequence_feature	9707	9830	.	-	.	ID=id-NZ_PYKE01000063.1:9707..9830;Dbxref=RFAM:RF00514;Note=His leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYKE01000063.1	RefSeq	gene	9806	9856	.	-	.	ID=gene-C9F05_RS04010;Name=hisL;gbkey=Gene;gene=hisL;gene_biotype=protein_coding;locus_tag=C9F05_RS04010;old_locus_tag=C9F05_04080
NZ_PYKE01000063.1	Protein Homology	CDS	9806	9856	.	-	0	ID=cds-WP_001364200.1;Parent=gene-C9F05_RS04010;Dbxref=GenBank:WP_001364200.1;Name=WP_001364200.1;Ontology_term=GO:0000105;gbkey=CDS;gene=hisL;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416522.1;locus_tag=C9F05_RS04010;product=his operon leader peptide;protein_id=WP_001364200.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	10019	10843	.	+	.	ID=gene-C9F05_RS04015;Name=C9F05_RS04015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04015;old_locus_tag=C9F05_04085
NZ_PYKE01000063.1	Protein Homology	CDS	10019	10843	.	+	0	ID=cds-WP_000754712.1;Parent=gene-C9F05_RS04015;Dbxref=GenBank:WP_000754712.1;Name=WP_000754712.1;Ontology_term=GO:0016491,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461015.1;locus_tag=C9F05_RS04015;product=SDR family oxidoreductase;protein_id=WP_000754712.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	10889	11803	.	+	.	ID=gene-C9F05_RS04020;Name=C9F05_RS04020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04020;old_locus_tag=C9F05_04090
NZ_PYKE01000063.1	Protein Homology	CDS	10889	11803	.	+	0	ID=cds-WP_000803316.1;Parent=gene-C9F05_RS04020;Dbxref=GenBank:WP_000803316.1;Name=WP_000803316.1;Ontology_term=GO:0001216,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461014.1;locus_tag=C9F05_RS04020;product=LysR family transcriptional regulator;protein_id=WP_000803316.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	12037	12099	.	+	.	ID=gene-C9F05_RS04025;Name=yoeI;gbkey=Gene;gene=yoeI;gene_biotype=protein_coding;locus_tag=C9F05_RS04025;old_locus_tag=C9F05_04095
NZ_PYKE01000063.1	Protein Homology	CDS	12037	12099	.	+	0	ID=cds-WP_096335044.1;Parent=gene-C9F05_RS04025;Dbxref=GenBank:WP_096335044.1;Name=WP_096335044.1;gbkey=CDS;gene=yoeI;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791246.1;locus_tag=C9F05_RS04025;product=membrane protein YoeI;protein_id=WP_096335044.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	12089	13447	.	+	.	ID=gene-C9F05_RS04030;Name=plaP;gbkey=Gene;gene=plaP;gene_biotype=protein_coding;locus_tag=C9F05_RS04030;old_locus_tag=C9F05_04100
NZ_PYKE01000063.1	Protein Homology	CDS	12089	13447	.	+	0	ID=cds-WP_001519005.1;Parent=gene-C9F05_RS04030;Dbxref=GenBank:WP_001519005.1;Name=WP_001519005.1;gbkey=CDS;gene=plaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416518.2;locus_tag=C9F05_RS04030;product=putrescine/proton symporter PlaP;protein_id=WP_001519005.1;transl_table=11
NZ_PYKE01000063.1	RefSeq	gene	13583	15013	.	-	.	ID=gene-C9F05_RS04035;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=C9F05_RS04035;old_locus_tag=C9F05_04105
NZ_PYKE01000063.1	Protein Homology	CDS	13583	15013	.	-	0	ID=cds-WP_000216702.1;Parent=gene-C9F05_RS04035;Dbxref=GenBank:WP_000216702.1;Name=WP_000216702.1;Ontology_term=GO:0006281,GO:0000175,GO:0003676,GO:0008310;gbkey=CDS;gene=sbcB;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA,single-stranded DNA 3'-5' DNA exonuclease activity|0008310||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461012.1;locus_tag=C9F05_RS04035;product=exodeoxyribonuclease I;protein_id=WP_000216702.1;transl_table=11
##sequence-region NZ_PYKE01000030.1 1 14914
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000030.1	RefSeq	region	1	14914	.	+	.	ID=NZ_PYKE01000030.1:1..14914;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000030.1	RefSeq	gene	1	466	.	+	.	ID=gene-C9F05_RS01860;Name=C9F05_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01860;old_locus_tag=C9F05_01895;partial=true;start_range=.,1
NZ_PYKE01000030.1	Protein Homology	CDS	1	466	.	+	1	ID=cds-WP_135369973.1;Parent=gene-C9F05_RS01860;Dbxref=GenBank:WP_135369973.1;Name=WP_135369973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012219494.1;locus_tag=C9F05_RS01860;partial=true;product=DUF1202 family protein;protein_id=WP_135369973.1;start_range=.,1;transl_table=11
NZ_PYKE01000030.1	RefSeq	pseudogene	555	1600	.	-	.	ID=gene-C9F05_RS01865;Name=C9F05_RS01865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS01865;old_locus_tag=C9F05_01900;pseudo=true
NZ_PYKE01000030.1	Protein Homology	CDS	555	1600	.	-	0	ID=cds-C9F05_RS01865;Parent=gene-C9F05_RS01865;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=C9F05_RS01865;product=IS256 family transposase;pseudo=true;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	1743	2495	.	-	.	ID=gene-C9F05_RS01870;Name=C9F05_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01870;old_locus_tag=C9F05_01905
NZ_PYKE01000030.1	Protein Homology	CDS	1743	2495	.	-	0	ID=cds-WP_135369974.1;Parent=gene-C9F05_RS01870;Dbxref=GenBank:WP_135369974.1;Name=WP_135369974.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463184.1;locus_tag=C9F05_RS01870;product=non-specific acid phosphatase;protein_id=WP_135369974.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	pseudogene	3049	3126	.	+	.	ID=gene-C9F05_RS01875;Name=C9F05_RS01875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS01875;old_locus_tag=C9F05_01910;partial=true;pseudo=true;start_range=.,3049
NZ_PYKE01000030.1	Protein Homology	CDS	3049	3126	.	+	0	ID=cds-C9F05_RS01875;Parent=gene-C9F05_RS01875;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003842122.1;locus_tag=C9F05_RS01875;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,3049;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	3205	3280	.	-	.	ID=gene-C9F05_RS01880;Name=C9F05_RS01880;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS01880;old_locus_tag=C9F05_01915
NZ_PYKE01000030.1	tRNAscan-SE	tRNA	3205	3280	.	-	.	ID=rna-C9F05_RS01880;Parent=gene-C9F05_RS01880;anticodon=(pos:complement(3245..3247));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01880;product=tRNA-Phe
NZ_PYKE01000030.1	tRNAscan-SE	exon	3205	3280	.	-	.	ID=exon-C9F05_RS01880-1;Parent=rna-C9F05_RS01880;anticodon=(pos:complement(3245..3247));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01880;product=tRNA-Phe
NZ_PYKE01000030.1	RefSeq	gene	3396	3971	.	-	.	ID=gene-C9F05_RS01885;Name=C9F05_RS01885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01885;old_locus_tag=C9F05_01920
NZ_PYKE01000030.1	Protein Homology	CDS	3396	3971	.	-	0	ID=cds-WP_001188504.1;Parent=gene-C9F05_RS01885;Dbxref=GenBank:WP_001188504.1;Name=WP_001188504.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463186.1;locus_tag=C9F05_RS01885;product=transcriptional regulator;protein_id=WP_001188504.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	4008	5711	.	-	.	ID=gene-C9F05_RS01890;Name=C9F05_RS01890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01890;old_locus_tag=C9F05_01925
NZ_PYKE01000030.1	Protein Homology	CDS	4008	5711	.	-	0	ID=cds-WP_135369975.1;Parent=gene-C9F05_RS01890;Dbxref=GenBank:WP_135369975.1;Name=WP_135369975.1;Ontology_term=GO:0017004,GO:0009055,GO:0030554,GO:0047134;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,adenyl nucleotide binding|0030554||IEA,protein-disulfide reductase [NAD(P)H] activity|0047134||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463187.1;locus_tag=C9F05_RS01890;product=protein-disulfide reductase DsbD;protein_id=WP_135369975.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	5687	6034	.	-	.	ID=gene-C9F05_RS01895;Name=cutA;gbkey=Gene;gene=cutA;gene_biotype=protein_coding;locus_tag=C9F05_RS01895;old_locus_tag=C9F05_01930
NZ_PYKE01000030.1	Protein Homology	CDS	5687	6034	.	-	0	ID=cds-WP_000887832.1;Parent=gene-C9F05_RS01895;Dbxref=GenBank:WP_000887832.1;Name=WP_000887832.1;gbkey=CDS;gene=cutA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463188.1;locus_tag=C9F05_RS01895;product=divalent cation tolerance protein CutA;protein_id=WP_000887832.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	6155	7456	.	-	.	ID=gene-C9F05_RS01900;Name=dcuA;gbkey=Gene;gene=dcuA;gene_biotype=protein_coding;locus_tag=C9F05_RS01900;old_locus_tag=C9F05_01935
NZ_PYKE01000030.1	Protein Homology	CDS	6155	7456	.	-	0	ID=cds-WP_000637595.1;Parent=gene-C9F05_RS01900;Dbxref=GenBank:WP_000637595.1;Name=WP_000637595.1;gbkey=CDS;gene=dcuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463189.1;locus_tag=C9F05_RS01900;product=anaerobic C4-dicarboxylate transporter DcuA;protein_id=WP_000637595.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	7571	9007	.	-	.	ID=gene-C9F05_RS01905;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=C9F05_RS01905;old_locus_tag=C9F05_01940
NZ_PYKE01000030.1	Protein Homology	CDS	7571	9007	.	-	0	ID=cds-WP_000069440.1;Parent=gene-C9F05_RS01905;Dbxref=GenBank:WP_000069440.1;Name=WP_000069440.1;Ontology_term=GO:0006520,GO:0008797;gbkey=CDS;gene=aspA;go_function=aspartate ammonia-lyase activity|0008797||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463190.1;locus_tag=C9F05_RS01905;product=aspartate ammonia-lyase;protein_id=WP_000069440.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	9348	9824	.	+	.	ID=gene-C9F05_RS01910;Name=C9F05_RS01910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01910;old_locus_tag=C9F05_01945
NZ_PYKE01000030.1	Protein Homology	CDS	9348	9824	.	+	0	ID=cds-WP_001267291.1;Parent=gene-C9F05_RS01910;Dbxref=GenBank:WP_001267291.1;Name=WP_001267291.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313148.1;locus_tag=C9F05_RS01910;product=FxsA family protein;protein_id=WP_001267291.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	9883	11124	.	-	.	ID=gene-C9F05_RS01915;Name=yjeH;gbkey=Gene;gene=yjeH;gene_biotype=protein_coding;locus_tag=C9F05_RS01915;old_locus_tag=C9F05_01950
NZ_PYKE01000030.1	Protein Homology	CDS	9883	11124	.	-	0	ID=cds-WP_023136358.1;Parent=gene-C9F05_RS01915;Dbxref=GenBank:WP_023136358.1;Name=WP_023136358.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yjeH;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463192.1;locus_tag=C9F05_RS01915;product=L-methionine/branched-chain amino acid transporter;protein_id=WP_023136358.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	11400	11693	.	+	.	ID=gene-C9F05_RS01920;Name=C9F05_RS01920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01920;old_locus_tag=C9F05_01955
NZ_PYKE01000030.1	Protein Homology	CDS	11400	11693	.	+	0	ID=cds-WP_000027827.1;Parent=gene-C9F05_RS01920;Dbxref=GenBank:WP_000027827.1;Name=WP_000027827.1;Ontology_term=GO:0005524,GO:0140662;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000027827.1;locus_tag=C9F05_RS01920;product=co-chaperone GroES;protein_id=WP_000027827.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	11737	13383	.	+	.	ID=gene-C9F05_RS01925;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=C9F05_RS01925;old_locus_tag=C9F05_01960
NZ_PYKE01000030.1	Protein Homology	CDS	11737	13383	.	+	0	ID=cds-WP_000729126.1;Parent=gene-C9F05_RS01925;Dbxref=GenBank:WP_000729126.1;Name=WP_000729126.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0042026,GO:0140662;gbkey=CDS;gene=groL;go_function=ATP-dependent protein folding chaperone|0140662||IEA;go_process=protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120975.1;locus_tag=C9F05_RS01925;product=chaperonin GroEL;protein_id=WP_000729126.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	13627	13980	.	+	.	ID=gene-C9F05_RS01930;Name=C9F05_RS01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01930;old_locus_tag=C9F05_01965
NZ_PYKE01000030.1	Protein Homology	CDS	13627	13980	.	+	0	ID=cds-WP_000558210.1;Parent=gene-C9F05_RS01930;Dbxref=GenBank:WP_000558210.1;Name=WP_000558210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418568.2;locus_tag=C9F05_RS01930;product=DUF4156 domain-containing protein;protein_id=WP_000558210.1;transl_table=11
NZ_PYKE01000030.1	RefSeq	gene	14028	14885	.	-	.	ID=gene-C9F05_RS01935;Name=C9F05_RS01935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01935;old_locus_tag=C9F05_01970
NZ_PYKE01000030.1	Protein Homology	CDS	14028	14885	.	-	0	ID=cds-WP_135369976.1;Parent=gene-C9F05_RS01935;Dbxref=GenBank:WP_135369976.1;Name=WP_135369976.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463196.1;locus_tag=C9F05_RS01935;product=YjeJ family protein;protein_id=WP_135369976.1;transl_table=11
##sequence-region NZ_PYKE01000323.1 1 273
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000323.1	RefSeq	region	1	273	.	+	.	ID=NZ_PYKE01000323.1:1..273;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000323.1	RefSeq	gene	1	273	.	-	.	ID=gene-C9F05_RS22190;Name=C9F05_RS22190;end_range=273,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22190;old_locus_tag=C9F05_22775;partial=true;start_range=.,1
NZ_PYKE01000323.1	Protein Homology	CDS	1	273	.	-	1	ID=cds-WP_135370640.1;Parent=gene-C9F05_RS22190;Dbxref=GenBank:WP_135370640.1;Name=WP_135370640.1;end_range=273,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747458.1;locus_tag=C9F05_RS22190;partial=true;product=autotransporter-associated beta strand repeat-containing protein;protein_id=WP_135370640.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000170.1 1 272
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000170.1	RefSeq	region	1	272	.	+	.	ID=NZ_PYKE01000170.1:1..272;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
##sequence-region NZ_PYKE01000125.1 1 14796
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000125.1	RefSeq	region	1	14796	.	+	.	ID=NZ_PYKE01000125.1:1..14796;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000125.1	RefSeq	gene	307	939	.	-	.	ID=gene-C9F05_RS08995;Name=C9F05_RS08995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08995;old_locus_tag=C9F05_09225
NZ_PYKE01000125.1	Protein Homology	CDS	307	939	.	-	0	ID=cds-WP_001650607.1;Parent=gene-C9F05_RS08995;Dbxref=GenBank:WP_001650607.1;Name=WP_001650607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461947.1;locus_tag=C9F05_RS08995;product=YfdX family protein;protein_id=WP_001650607.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	986	1522	.	-	.	ID=gene-C9F05_RS09000;Name=C9F05_RS09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09000;old_locus_tag=C9F05_09230
NZ_PYKE01000125.1	Protein Homology	CDS	986	1522	.	-	0	ID=cds-WP_058107364.1;Parent=gene-C9F05_RS09000;Dbxref=GenBank:WP_058107364.1;Name=WP_058107364.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461948.1;locus_tag=C9F05_RS09000;product=STM3031 family outer membrane protein;protein_id=WP_058107364.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	2328	2726	.	-	.	ID=gene-C9F05_RS09010;Name=vapC;gbkey=Gene;gene=vapC;gene_biotype=protein_coding;locus_tag=C9F05_RS09010;old_locus_tag=C9F05_09245
NZ_PYKE01000125.1	Protein Homology	CDS	2328	2726	.	-	0	ID=cds-WP_000911337.1;Parent=gene-C9F05_RS09010;Dbxref=GenBank:WP_000911337.1;Name=WP_000911337.1;gbkey=CDS;gene=vapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461950.1;locus_tag=C9F05_RS09010;product=tRNA(fMet)-specific endonuclease VapC;protein_id=WP_000911337.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	2726	2953	.	-	.	ID=gene-C9F05_RS09015;Name=vapB;gbkey=Gene;gene=vapB;gene_biotype=protein_coding;locus_tag=C9F05_RS09015;old_locus_tag=C9F05_09250
NZ_PYKE01000125.1	Protein Homology	CDS	2726	2953	.	-	0	ID=cds-WP_000557549.1;Parent=gene-C9F05_RS09015;Dbxref=GenBank:WP_000557549.1;Name=WP_000557549.1;gbkey=CDS;gene=vapB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461951.1;locus_tag=C9F05_RS09015;product=toxin-antitoxin system antitoxin VapB;protein_id=WP_000557549.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	3162	3374	.	+	.	ID=gene-C9F05_RS09020;Name=C9F05_RS09020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09020;old_locus_tag=C9F05_09255
NZ_PYKE01000125.1	Protein Homology	CDS	3162	3374	.	+	0	ID=cds-WP_135370193.1;Parent=gene-C9F05_RS09020;Dbxref=GenBank:WP_135370193.1;Name=WP_135370193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_449411.1;locus_tag=C9F05_RS09020;product=hypothetical protein;protein_id=WP_135370193.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	3467	3540	.	-	.	ID=gene-C9F05_RS09025;Name=C9F05_RS09025;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS09025;old_locus_tag=C9F05_09260
NZ_PYKE01000125.1	tRNAscan-SE	tRNA	3467	3540	.	-	.	ID=rna-C9F05_RS09025;Parent=gene-C9F05_RS09025;anticodon=(pos:complement(3506..3508));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS09025;product=tRNA-Gly
NZ_PYKE01000125.1	tRNAscan-SE	exon	3467	3540	.	-	.	ID=exon-C9F05_RS09025-1;Parent=rna-C9F05_RS09025;anticodon=(pos:complement(3506..3508));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS09025;product=tRNA-Gly
NZ_PYKE01000125.1	RefSeq	gene	3620	4378	.	-	.	ID=gene-C9F05_RS09030;Name=actS;gbkey=Gene;gene=actS;gene_biotype=protein_coding;locus_tag=C9F05_RS09030;old_locus_tag=C9F05_09265
NZ_PYKE01000125.1	Protein Homology	CDS	3620	4378	.	-	0	ID=cds-WP_000244328.1;Parent=gene-C9F05_RS09030;Dbxref=GenBank:WP_000244328.1;Name=WP_000244328.1;gbkey=CDS;gene=actS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461954.1;locus_tag=C9F05_RS09030;product=amidase activator ActS;protein_id=WP_000244328.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	4643	5188	.	+	.	ID=gene-C9F05_RS09035;Name=idi;gbkey=Gene;gene=idi;gene_biotype=protein_coding;locus_tag=C9F05_RS09035;old_locus_tag=C9F05_09275
NZ_PYKE01000125.1	Protein Homology	CDS	4643	5188	.	+	0	ID=cds-WP_000133994.1;Parent=gene-C9F05_RS09035;Dbxref=GenBank:WP_000133994.1;Name=WP_000133994.1;Ontology_term=GO:0008299,GO:0004452;gbkey=CDS;gene=idi;go_function=isopentenyl-diphosphate delta-isomerase activity|0004452||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461955.1;locus_tag=C9F05_RS09035;product=isopentenyl-diphosphate Delta-isomerase;protein_id=WP_000133994.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	5264	6781	.	-	.	ID=gene-C9F05_RS09040;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=C9F05_RS09040;old_locus_tag=C9F05_09280
NZ_PYKE01000125.1	Protein Homology	CDS	5264	6781	.	-	0	ID=cds-WP_000003339.1;Parent=gene-C9F05_RS09040;Dbxref=GenBank:WP_000003339.1;Name=WP_000003339.1;Ontology_term=GO:0006430,GO:0004824,GO:0005524,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740376.1;locus_tag=C9F05_RS09040;product=lysine--tRNA ligase;protein_id=WP_000003339.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	6791	7889	.	-	.	ID=gene-C9F05_RS09045;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=C9F05_RS09045;old_locus_tag=C9F05_09285
NZ_PYKE01000125.1	Protein Homology	CDS	7815	7889	.	-	0	ID=cds-WP_010989230.1;Parent=gene-C9F05_RS09045;Dbxref=GenBank:WP_010989230.1;Name=WP_010989230.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311790.1;locus_tag=C9F05_RS09045;product=peptide chain release factor 2;protein_id=WP_010989230.1;transl_table=11
NZ_PYKE01000125.1	Protein Homology	CDS	6791	7813	.	-	0	ID=cds-WP_010989230.1;Parent=gene-C9F05_RS09045;Dbxref=GenBank:WP_010989230.1;Name=WP_010989230.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311790.1;locus_tag=C9F05_RS09045;product=peptide chain release factor 2;protein_id=WP_010989230.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	7994	9727	.	-	.	ID=gene-C9F05_RS09050;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=C9F05_RS09050;old_locus_tag=C9F05_09290
NZ_PYKE01000125.1	Protein Homology	CDS	7994	9727	.	-	0	ID=cds-WP_000813394.1;Parent=gene-C9F05_RS09050;Dbxref=GenBank:WP_000813394.1;Name=WP_000813394.1;Ontology_term=GO:0006281,GO:0006310,GO:0008409;gbkey=CDS;gene=recJ;go_function=5'-3' exonuclease activity|0008409||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461958.1;locus_tag=C9F05_RS09050;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=WP_000813394.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	9733	10446	.	-	.	ID=gene-C9F05_RS09055;Name=dsbC;gbkey=Gene;gene=dsbC;gene_biotype=protein_coding;locus_tag=C9F05_RS09055;old_locus_tag=C9F05_09295
NZ_PYKE01000125.1	Protein Homology	CDS	9733	10446	.	-	0	ID=cds-WP_000745614.1;Parent=gene-C9F05_RS09055;Dbxref=GenBank:WP_000745614.1;Name=WP_000745614.1;Ontology_term=GO:0042597;gbkey=CDS;gene=dsbC;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461959.1;locus_tag=C9F05_RS09055;product=bifunctional protein-disulfide isomerase/oxidoreductase DsbC;protein_id=WP_000745614.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	10470	11366	.	-	.	ID=gene-C9F05_RS09060;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=C9F05_RS09060;old_locus_tag=C9F05_09300
NZ_PYKE01000125.1	Protein Homology	CDS	10470	11366	.	-	0	ID=cds-WP_000434302.1;Parent=gene-C9F05_RS09060;Dbxref=GenBank:WP_000434302.1;Name=WP_000434302.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerD;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461960.1;locus_tag=C9F05_RS09060;product=site-specific tyrosine recombinase XerD;protein_id=WP_000434302.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	11479	12000	.	+	.	ID=gene-C9F05_RS09065;Name=fldB;gbkey=Gene;gene=fldB;gene_biotype=protein_coding;locus_tag=C9F05_RS09065;old_locus_tag=C9F05_09305
NZ_PYKE01000125.1	Protein Homology	CDS	11479	12000	.	+	0	ID=cds-WP_001055885.1;Parent=gene-C9F05_RS09065;Dbxref=GenBank:WP_001055885.1;Name=WP_001055885.1;Ontology_term=GO:0009055,GO:0010181;gbkey=CDS;gene=fldB;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461961.1;locus_tag=C9F05_RS09065;product=flavodoxin FldB;protein_id=WP_001055885.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	12053	12466	.	-	.	ID=gene-C9F05_RS09070;Name=C9F05_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09070;old_locus_tag=C9F05_09310
NZ_PYKE01000125.1	Protein Homology	CDS	12053	12466	.	-	0	ID=cds-WP_000244756.1;Parent=gene-C9F05_RS09070;Dbxref=GenBank:WP_000244756.1;Name=WP_000244756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461962.1;locus_tag=C9F05_RS09070;product=protein YgfX;protein_id=WP_000244756.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	12447	12713	.	-	.	ID=gene-C9F05_RS09075;Name=sdhE;gbkey=Gene;gene=sdhE;gene_biotype=protein_coding;locus_tag=C9F05_RS09075;old_locus_tag=C9F05_09315
NZ_PYKE01000125.1	Protein Homology	CDS	12447	12713	.	-	0	ID=cds-WP_000351186.1;Parent=gene-C9F05_RS09075;Dbxref=GenBank:WP_000351186.1;Name=WP_000351186.1;gbkey=CDS;gene=sdhE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000354044.1;locus_tag=C9F05_RS09075;product=FAD assembly factor SdhE;protein_id=WP_000351186.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	12963	13943	.	+	.	ID=gene-C9F05_RS09080;Name=ygfZ;gbkey=Gene;gene=ygfZ;gene_biotype=protein_coding;locus_tag=C9F05_RS09080;old_locus_tag=C9F05_09325
NZ_PYKE01000125.1	Protein Homology	CDS	12963	13943	.	+	0	ID=cds-WP_000874176.1;Parent=gene-C9F05_RS09080;Dbxref=GenBank:WP_000874176.1;Name=WP_000874176.1;Ontology_term=GO:0009451,GO:0005542;gbkey=CDS;gene=ygfZ;go_function=folic acid binding|0005542||IEA;go_process=RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461964.1;locus_tag=C9F05_RS09080;product=tRNA-modifying protein YgfZ;protein_id=WP_000874176.1;transl_table=11
NZ_PYKE01000125.1	RefSeq	gene	14059	14718	.	-	.	ID=gene-C9F05_RS09090;Name=trhA;gbkey=Gene;gene=trhA;gene_biotype=protein_coding;locus_tag=C9F05_RS09090;old_locus_tag=C9F05_09335
NZ_PYKE01000125.1	Protein Homology	CDS	14059	14718	.	-	0	ID=cds-WP_135370192.1;Parent=gene-C9F05_RS09090;Dbxref=GenBank:WP_135370192.1;Name=WP_135370192.1;Ontology_term=GO:0019835;gbkey=CDS;gene=trhA;go_process=cytolysis|0019835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461965.1;locus_tag=C9F05_RS09090;product=PAQR family membrane homeostasis protein TrhA;protein_id=WP_135370192.1;transl_table=11
##sequence-region NZ_PYKE01000045.1 1 270
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000045.1	RefSeq	region	1	270	.	+	.	ID=NZ_PYKE01000045.1:1..270;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000045.1	RefSeq	pseudogene	50	270	.	+	.	ID=gene-C9F05_RS23630;Name=C9F05_RS23630;end_range=270,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23630;old_locus_tag=C9F05_03085;partial=true;pseudo=true
NZ_PYKE01000045.1	GeneMarkS-2+	CDS	50	270	.	+	0	ID=cds-C9F05_RS23630;Parent=gene-C9F05_RS23630;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=270,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23630;partial=true;product=DUF6056 family protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000016.1 1 268
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000016.1	RefSeq	region	1	268	.	+	.	ID=NZ_PYKE01000016.1:1..268;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000016.1	RefSeq	pseudogene	1	268	.	-	.	ID=gene-C9F05_RS00785;Name=C9F05_RS00785;end_range=268,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS00785;old_locus_tag=C9F05_00795;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000016.1	Protein Homology	CDS	1	268	.	-	0	ID=cds-C9F05_RS00785;Parent=gene-C9F05_RS00785;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=268,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460420.1;locus_tag=C9F05_RS00785;partial=true;product=electron transport complex subunit RsxC;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000201.1 1 14768
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000201.1	RefSeq	region	1	14768	.	+	.	ID=NZ_PYKE01000201.1:1..14768;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000201.1	RefSeq	gene	24	998	.	-	.	ID=gene-C9F05_RS13220;Name=acuI;gbkey=Gene;gene=acuI;gene_biotype=protein_coding;locus_tag=C9F05_RS13220;old_locus_tag=C9F05_13595
NZ_PYKE01000201.1	Protein Homology	CDS	24	998	.	-	0	ID=cds-WP_001148246.1;Parent=gene-C9F05_RS13220;Dbxref=GenBank:WP_001148246.1;Name=WP_001148246.1;gbkey=CDS;gene=acuI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462286.1;locus_tag=C9F05_RS13220;product=acrylyl-CoA reductase (NADPH);protein_id=WP_001148246.1;transl_table=11
NZ_PYKE01000201.1	RefSeq	gene	1202	3142	.	+	.	ID=gene-C9F05_RS13225;Name=csrD;gbkey=Gene;gene=csrD;gene_biotype=protein_coding;locus_tag=C9F05_RS13225;old_locus_tag=C9F05_13600
NZ_PYKE01000201.1	Protein Homology	CDS	1202	3142	.	+	0	ID=cds-WP_001241381.1;Parent=gene-C9F05_RS13225;Dbxref=GenBank:WP_001241381.1;Name=WP_001241381.1;gbkey=CDS;gene=csrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462285.1;locus_tag=C9F05_RS13225;product=RNase E specificity factor CsrD;protein_id=WP_001241381.1;transl_table=11
NZ_PYKE01000201.1	RefSeq	gene	3450	4493	.	+	.	ID=gene-C9F05_RS13235;Name=mreB;gbkey=Gene;gene=mreB;gene_biotype=protein_coding;locus_tag=C9F05_RS13235;old_locus_tag=C9F05_13615
NZ_PYKE01000201.1	Protein Homology	CDS	3450	4493	.	+	0	ID=cds-WP_000913396.1;Parent=gene-C9F05_RS13235;Dbxref=GenBank:WP_000913396.1;Name=WP_000913396.1;gbkey=CDS;gene=mreB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000913396.1;locus_tag=C9F05_RS13235;product=rod shape-determining protein MreB;protein_id=WP_000913396.1;transl_table=11
NZ_PYKE01000201.1	RefSeq	gene	4558	5610	.	+	.	ID=gene-C9F05_RS13240;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=C9F05_RS13240;old_locus_tag=C9F05_13620
NZ_PYKE01000201.1	Protein Homology	CDS	4558	5610	.	+	0	ID=cds-WP_000802536.1;Parent=gene-C9F05_RS13240;Dbxref=GenBank:WP_000802536.1;Name=WP_000802536.1;Ontology_term=GO:0008360;gbkey=CDS;gene=mreC;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462283.1;locus_tag=C9F05_RS13240;product=rod shape-determining protein MreC;protein_id=WP_000802536.1;transl_table=11
NZ_PYKE01000201.1	RefSeq	gene	5613	6101	.	+	.	ID=gene-C9F05_RS13245;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=C9F05_RS13245;old_locus_tag=C9F05_13625
NZ_PYKE01000201.1	Protein Homology	CDS	5613	6101	.	+	0	ID=cds-WP_000179403.1;Parent=gene-C9F05_RS13245;Dbxref=GenBank:WP_000179403.1;Name=WP_000179403.1;gbkey=CDS;gene=mreD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001487551.1;locus_tag=C9F05_RS13245;product=rod shape-determining protein MreD;protein_id=WP_000179403.1;transl_table=11
NZ_PYKE01000201.1	RefSeq	gene	6110	6703	.	+	.	ID=gene-C9F05_RS13250;Name=C9F05_RS13250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13250;old_locus_tag=C9F05_13630
NZ_PYKE01000201.1	Protein Homology	CDS	6110	6703	.	+	0	ID=cds-WP_000210306.1;Parent=gene-C9F05_RS13250;Dbxref=GenBank:WP_000210306.1;Name=WP_000210306.1;Ontology_term=GO:0009117,GO:0009146,GO:0000166,GO:0047429;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleotide metabolic process|0009117||IEA,purine nucleoside triphosphate catabolic process|0009146||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462281.1;locus_tag=C9F05_RS13250;product=Maf family protein;protein_id=WP_000210306.1;transl_table=11
NZ_PYKE01000201.1	RefSeq	gene	6693	8162	.	+	.	ID=gene-C9F05_RS13255;Name=rng;gbkey=Gene;gene=rng;gene_biotype=protein_coding;locus_tag=C9F05_RS13255;old_locus_tag=C9F05_13635
NZ_PYKE01000201.1	Protein Homology	CDS	6693	8162	.	+	0	ID=cds-WP_000123188.1;Parent=gene-C9F05_RS13255;Dbxref=GenBank:WP_000123188.1;Name=WP_000123188.1;Ontology_term=GO:0006396,GO:0003723,GO:0004540;gbkey=CDS;gene=rng;go_function=RNA binding|0003723||IEA,RNA nuclease activity|0004540||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818051.1;locus_tag=C9F05_RS13255;product=ribonuclease G;protein_id=WP_000123188.1;transl_table=11
NZ_PYKE01000201.1	RefSeq	gene	8269	12069	.	+	.	ID=gene-C9F05_RS13260;Name=yhdP;gbkey=Gene;gene=yhdP;gene_biotype=protein_coding;locus_tag=C9F05_RS13260;old_locus_tag=C9F05_13640
NZ_PYKE01000201.1	Protein Homology	CDS	8269	12069	.	+	0	ID=cds-WP_135370352.1;Parent=gene-C9F05_RS13260;Dbxref=GenBank:WP_135370352.1;Name=WP_135370352.1;gbkey=CDS;gene=yhdP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462279.1;locus_tag=C9F05_RS13260;product=AsmA2 domain-containing protein YhdP;protein_id=WP_135370352.1;transl_table=11
NZ_PYKE01000201.1	RefSeq	gene	12214	13659	.	+	.	ID=gene-C9F05_RS13265;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=C9F05_RS13265;old_locus_tag=C9F05_13645
NZ_PYKE01000201.1	Protein Homology	CDS	12214	13659	.	+	0	ID=cds-WP_000055936.1;Parent=gene-C9F05_RS13265;Dbxref=GenBank:WP_000055936.1;Name=WP_000055936.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=tldD;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007888214.1;locus_tag=C9F05_RS13265;product=metalloprotease TldD;protein_id=WP_000055936.1;transl_table=11
NZ_PYKE01000201.1	RefSeq	gene	13782	14711	.	-	.	ID=gene-C9F05_RS13270;Name=aaeR;gbkey=Gene;gene=aaeR;gene_biotype=protein_coding;locus_tag=C9F05_RS13270;old_locus_tag=C9F05_13650
NZ_PYKE01000201.1	Protein Homology	CDS	13782	14711	.	-	0	ID=cds-WP_000440300.1;Parent=gene-C9F05_RS13270;Dbxref=GenBank:WP_000440300.1;Name=WP_000440300.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=aaeR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462277.1;locus_tag=C9F05_RS13270;product=HTH-type transcriptional activator AaeR;protein_id=WP_000440300.1;transl_table=11
##sequence-region NZ_PYKE01000251.1 1 262
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000251.1	RefSeq	region	1	262	.	+	.	ID=NZ_PYKE01000251.1:1..262;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000251.1	RefSeq	pseudogene	1	242	.	-	.	ID=gene-C9F05_RS16435;Name=C9F05_RS16435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS16435;old_locus_tag=C9F05_16900;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000251.1	GeneMarkS-2+	CDS	1	242	.	-	0	ID=cds-C9F05_RS16435;Parent=gene-C9F05_RS16435;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS16435;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000119.1 1 14697
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000119.1	RefSeq	region	1	14697	.	+	.	ID=NZ_PYKE01000119.1:1..14697;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000119.1	RefSeq	gene	1	213	.	+	.	ID=gene-C9F05_RS08695;Name=C9F05_RS08695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08695;old_locus_tag=C9F05_08925;partial=true;start_range=.,1
NZ_PYKE01000119.1	Protein Homology	CDS	1	213	.	+	0	ID=cds-WP_135370186.1;Parent=gene-C9F05_RS08695;Dbxref=GenBank:WP_135370186.1;Name=WP_135370186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461466.1;locus_tag=C9F05_RS08695;partial=true;product=hypothetical protein;protein_id=WP_135370186.1;start_range=.,1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	369	2747	.	+	.	ID=gene-C9F05_RS08700;Name=C9F05_RS08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08700;old_locus_tag=C9F05_08930
NZ_PYKE01000119.1	Protein Homology	CDS	369	2747	.	+	0	ID=cds-WP_023227903.1;Parent=gene-C9F05_RS08700;Dbxref=GenBank:WP_023227903.1;Name=WP_023227903.1;Ontology_term=GO:0009061,GO:0009055,GO:0009389,GO:0030151,GO:0043546,GO:0051539;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,dimethyl sulfoxide reductase activity|0009389||IEA,molybdenum ion binding|0030151||IEA,molybdopterin cofactor binding|0043546||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=anaerobic respiration|0009061||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012664463.1;locus_tag=C9F05_RS08700;product=DmsA/YnfE/YnfF family dimethyl sulfoxide reductase;protein_id=WP_023227903.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	2744	3373	.	+	.	ID=gene-C9F05_RS08705;Name=C9F05_RS08705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08705;old_locus_tag=C9F05_08935
NZ_PYKE01000119.1	Protein Homology	CDS	2744	3373	.	+	0	ID=cds-WP_000077436.1;Parent=gene-C9F05_RS08705;Dbxref=GenBank:WP_000077436.1;Name=WP_000077436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461464.1;locus_tag=C9F05_RS08705;product=DMSO/selenate family reductase complex B subunit;protein_id=WP_000077436.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	3366	4175	.	+	.	ID=gene-C9F05_RS08710;Name=C9F05_RS08710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08710;old_locus_tag=C9F05_08940
NZ_PYKE01000119.1	Protein Homology	CDS	3366	4175	.	+	0	ID=cds-WP_135370187.1;Parent=gene-C9F05_RS08710;Dbxref=GenBank:WP_135370187.1;Name=WP_135370187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461463.2;locus_tag=C9F05_RS08710;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_135370187.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	4175	5038	.	+	.	ID=gene-C9F05_RS08715;Name=C9F05_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08715;old_locus_tag=C9F05_08945
NZ_PYKE01000119.1	Protein Homology	CDS	4175	5038	.	+	0	ID=cds-WP_023994422.1;Parent=gene-C9F05_RS08715;Dbxref=GenBank:WP_023994422.1;Name=WP_023994422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461462.1;locus_tag=C9F05_RS08715;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_023994422.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	5159	5590	.	+	.	ID=gene-C9F05_RS08720;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=C9F05_RS08720;old_locus_tag=C9F05_08950
NZ_PYKE01000119.1	Protein Homology	CDS	5159	5590	.	+	0	ID=cds-WP_000963846.1;Parent=gene-C9F05_RS08720;Dbxref=GenBank:WP_000963846.1;Name=WP_000963846.1;Ontology_term=GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000963848.1;locus_tag=C9F05_RS08720;product=nucleoside-diphosphate kinase;protein_id=WP_000963846.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	5797	6963	.	+	.	ID=gene-C9F05_RS08725;Name=C9F05_RS08725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08725;old_locus_tag=C9F05_08955
NZ_PYKE01000119.1	Protein Homology	CDS	5797	6963	.	+	0	ID=cds-WP_000003206.1;Parent=gene-C9F05_RS08725;Dbxref=GenBank:WP_000003206.1;Name=WP_000003206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461460.1;locus_tag=C9F05_RS08725;product=bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN;protein_id=WP_000003206.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	7255	8271	.	+	.	ID=gene-C9F05_RS08730;Name=rodZ;gbkey=Gene;gene=rodZ;gene_biotype=protein_coding;locus_tag=C9F05_RS08730;old_locus_tag=C9F05_08965
NZ_PYKE01000119.1	Protein Homology	CDS	7255	8271	.	+	0	ID=cds-WP_023260373.1;Parent=gene-C9F05_RS08730;Dbxref=GenBank:WP_023260373.1;Name=WP_023260373.1;Ontology_term=GO:0008360,GO:0003677,GO:0016020;gbkey=CDS;gene=rodZ;go_component=membrane|0016020||IEA;go_function=DNA binding|0003677||IEA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461459.1;locus_tag=C9F05_RS08730;product=cytoskeleton protein RodZ;protein_id=WP_023260373.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	8298	9416	.	+	.	ID=gene-C9F05_RS08735;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;gene_synonym=gcpE;locus_tag=C9F05_RS08735;old_locus_tag=C9F05_08970
NZ_PYKE01000119.1	Protein Homology	CDS	8298	9416	.	+	0	ID=cds-WP_000551804.1;Parent=gene-C9F05_RS08735;Dbxref=GenBank:WP_000551804.1;Name=WP_000551804.1;Ontology_term=GO:0008152,GO:0046429;gbkey=CDS;gene=ispG;go_function=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin)|0046429||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461458.1;locus_tag=C9F05_RS08735;product=flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;protein_id=WP_000551804.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	9527	10801	.	+	.	ID=gene-C9F05_RS08740;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=C9F05_RS08740;old_locus_tag=C9F05_08975
NZ_PYKE01000119.1	Protein Homology	CDS	9527	10801	.	+	0	ID=cds-WP_001107146.1;Parent=gene-C9F05_RS08740;Dbxref=GenBank:WP_001107146.1;Name=WP_001107146.1;Ontology_term=GO:0006427,GO:0004821,GO:0005524,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA,ATP binding|0005524||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461457.1;locus_tag=C9F05_RS08740;product=histidine--tRNA ligase;protein_id=WP_001107146.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	10815	11435	.	+	.	ID=gene-C9F05_RS08745;Name=C9F05_RS08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08745;old_locus_tag=C9F05_08980
NZ_PYKE01000119.1	Protein Homology	CDS	10815	11435	.	+	0	ID=cds-WP_000409190.1;Parent=gene-C9F05_RS08745;Dbxref=GenBank:WP_000409190.1;Name=WP_000409190.1;Ontology_term=GO:0005515,GO:0044877;gbkey=CDS;go_function=protein binding|0005515||IEA,protein-containing complex binding|0044877||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461456.1;locus_tag=C9F05_RS08745;product=YfgM family protein;protein_id=WP_000409190.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	11446	12624	.	+	.	ID=gene-C9F05_RS08750;Name=bamB;gbkey=Gene;gene=bamB;gene_biotype=protein_coding;locus_tag=C9F05_RS08750;old_locus_tag=C9F05_08985
NZ_PYKE01000119.1	Protein Homology	CDS	11446	12624	.	+	0	ID=cds-WP_001177072.1;Parent=gene-C9F05_RS08750;Dbxref=GenBank:WP_001177072.1;Name=WP_001177072.1;Ontology_term=GO:0005515;gbkey=CDS;gene=bamB;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461455.1;locus_tag=C9F05_RS08750;product=outer membrane protein assembly factor BamB;protein_id=WP_001177072.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	12743	14215	.	+	.	ID=gene-C9F05_RS08755;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=C9F05_RS08755;old_locus_tag=C9F05_08990
NZ_PYKE01000119.1	Protein Homology	CDS	12743	14215	.	+	0	ID=cds-WP_000249411.1;Parent=gene-C9F05_RS08755;Dbxref=GenBank:WP_000249411.1;Name=WP_000249411.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461454.1;locus_tag=C9F05_RS08755;product=ribosome biogenesis GTPase Der;protein_id=WP_000249411.1;transl_table=11
NZ_PYKE01000119.1	RefSeq	gene	14304	14525	.	+	.	ID=gene-C9F05_RS08760;Name=C9F05_RS08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08760;old_locus_tag=C9F05_08995
NZ_PYKE01000119.1	Protein Homology	CDS	14304	14525	.	+	0	ID=cds-WP_000406466.1;Parent=gene-C9F05_RS08760;Dbxref=GenBank:WP_000406466.1;Name=WP_000406466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461453.1;locus_tag=C9F05_RS08760;product=zinc ribbon domain-containing protein;protein_id=WP_000406466.1;transl_table=11
##sequence-region NZ_PYKE01000333.1 1 258
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000333.1	RefSeq	region	1	258	.	+	.	ID=NZ_PYKE01000333.1:1..258;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000333.1	RefSeq	gene	1	258	.	-	.	ID=gene-C9F05_RS22555;Name=C9F05_RS22555;end_range=258,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9F05_RS22555;old_locus_tag=C9F05_23150;partial=true;start_range=.,1
NZ_PYKE01000333.1	cmsearch	rRNA	1	258	.	-	.	ID=rna-C9F05_RS22555;Parent=gene-C9F05_RS22555;Dbxref=RFAM:RF02541;end_range=258,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS22555;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYKE01000333.1	cmsearch	exon	1	258	.	-	.	ID=exon-C9F05_RS22555-1;Parent=rna-C9F05_RS22555;Dbxref=RFAM:RF02541;end_range=258,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS22555;partial=true;product=23S ribosomal RNA;start_range=.,1
##sequence-region NZ_PYKE01000133.1 1 14615
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000133.1	RefSeq	region	1	14615	.	+	.	ID=NZ_PYKE01000133.1:1..14615;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000133.1	RefSeq	gene	96	1484	.	+	.	ID=gene-C9F05_RS09715;Name=C9F05_RS09715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09715;old_locus_tag=C9F05_09960
NZ_PYKE01000133.1	Protein Homology	CDS	96	1484	.	+	0	ID=cds-WP_000198255.1;Parent=gene-C9F05_RS09715;Dbxref=GenBank:WP_000198255.1;Name=WP_000198255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460535.1;locus_tag=C9F05_RS09715;product=NarK family nitrate/nitrite MFS transporter;protein_id=WP_000198255.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	1576	5316	.	+	.	ID=gene-C9F05_RS09720;Name=C9F05_RS09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09720;old_locus_tag=C9F05_09965
NZ_PYKE01000133.1	Protein Homology	CDS	1576	5316	.	+	0	ID=cds-WP_135370221.1;Parent=gene-C9F05_RS09720;Dbxref=GenBank:WP_135370221.1;Name=WP_135370221.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460536.1;locus_tag=C9F05_RS09720;product=nitrate reductase subunit alpha;protein_id=WP_135370221.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	5313	6857	.	+	.	ID=gene-C9F05_RS09725;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=C9F05_RS09725;old_locus_tag=C9F05_09970
NZ_PYKE01000133.1	Protein Homology	CDS	5313	6857	.	+	0	ID=cds-WP_000702591.1;Parent=gene-C9F05_RS09725;Dbxref=GenBank:WP_000702591.1;Name=WP_000702591.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;gene=narH;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460537.1;locus_tag=C9F05_RS09725;product=nitrate reductase subunit beta;protein_id=WP_000702591.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	6857	7552	.	+	.	ID=gene-C9F05_RS09730;Name=narW;gbkey=Gene;gene=narW;gene_biotype=protein_coding;locus_tag=C9F05_RS09730;old_locus_tag=C9F05_09975
NZ_PYKE01000133.1	Protein Homology	CDS	6857	7552	.	+	0	ID=cds-WP_001166287.1;Parent=gene-C9F05_RS09730;Dbxref=GenBank:WP_001166287.1;Name=WP_001166287.1;Ontology_term=GO:0051131,GO:0051082;gbkey=CDS;gene=narW;go_function=unfolded protein binding|0051082||IEA;go_process=chaperone-mediated protein complex assembly|0051131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460538.1;locus_tag=C9F05_RS09730;product=nitrate reductase molybdenum cofactor assembly chaperone;protein_id=WP_001166287.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	7549	8229	.	+	.	ID=gene-C9F05_RS09735;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=C9F05_RS09735;old_locus_tag=C9F05_09980
NZ_PYKE01000133.1	Protein Homology	CDS	7549	8229	.	+	0	ID=cds-WP_000617106.1;Parent=gene-C9F05_RS09735;Dbxref=GenBank:WP_000617106.1;Name=WP_000617106.1;Ontology_term=GO:0019645,GO:0008940,GO:0009325;gbkey=CDS;gene=narI;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460539.1;locus_tag=C9F05_RS09735;product=respiratory nitrate reductase subunit gamma;protein_id=WP_000617106.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	8335	9228	.	+	.	ID=gene-C9F05_RS09740;Name=C9F05_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09740;old_locus_tag=C9F05_09985
NZ_PYKE01000133.1	Protein Homology	CDS	8335	9228	.	+	0	ID=cds-WP_135370222.1;Parent=gene-C9F05_RS09740;Dbxref=GenBank:WP_135370222.1;Name=WP_135370222.1;Ontology_term=GO:0009058,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460540.1;locus_tag=C9F05_RS09740;product=PhzF family isomerase;protein_id=WP_135370222.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	9264	10109	.	-	.	ID=gene-C9F05_RS09745;Name=nhoA;gbkey=Gene;gene=nhoA;gene_biotype=protein_coding;locus_tag=C9F05_RS09745;old_locus_tag=C9F05_09990
NZ_PYKE01000133.1	Protein Homology	CDS	9264	10109	.	-	0	ID=cds-WP_061380083.1;Parent=gene-C9F05_RS09745;Dbxref=GenBank:WP_061380083.1;Name=WP_061380083.1;Ontology_term=GO:0016407;gbkey=CDS;gene=nhoA;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460541.1;locus_tag=C9F05_RS09745;product=N-hydroxyarylamine O-acetyltransferase;protein_id=WP_061380083.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	10393	11025	.	-	.	ID=gene-C9F05_RS09755;Name=steA;gbkey=Gene;gene=steA;gene_biotype=protein_coding;locus_tag=C9F05_RS09755;old_locus_tag=C9F05_10000
NZ_PYKE01000133.1	Protein Homology	CDS	10393	11025	.	-	0	ID=cds-WP_135370224.1;Parent=gene-C9F05_RS09755;Dbxref=GenBank:WP_135370224.1;Name=WP_135370224.1;gbkey=CDS;gene=steA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460542.1;locus_tag=C9F05_RS09755;product=type III secretion system effector SteA;protein_id=WP_135370224.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	11538	13031	.	+	.	ID=gene-C9F05_RS09765;Name=ansP;gbkey=Gene;gene=ansP;gene_biotype=protein_coding;locus_tag=C9F05_RS09765;old_locus_tag=C9F05_10010
NZ_PYKE01000133.1	Protein Homology	CDS	11538	13031	.	+	0	ID=cds-WP_000857110.1;Parent=gene-C9F05_RS09765;Dbxref=GenBank:WP_000857110.1;Name=WP_000857110.1;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;gene=ansP;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460543.1;locus_tag=C9F05_RS09765;product=L-asparagine permease;protein_id=WP_000857110.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	13108	13329	.	-	.	ID=gene-C9F05_RS09770;Name=C9F05_RS09770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09770;old_locus_tag=C9F05_10015
NZ_PYKE01000133.1	Protein Homology	CDS	13108	13329	.	-	0	ID=cds-WP_000732362.1;Parent=gene-C9F05_RS09770;Dbxref=GenBank:WP_000732362.1;Name=WP_000732362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460544.1;locus_tag=C9F05_RS09770;product=YgdI/YgdR family lipoprotein;protein_id=WP_000732362.1;transl_table=11
NZ_PYKE01000133.1	RefSeq	gene	13474	14535	.	-	.	ID=gene-C9F05_RS09775;Name=yncE;gbkey=Gene;gene=yncE;gene_biotype=protein_coding;locus_tag=C9F05_RS09775;old_locus_tag=C9F05_10020
NZ_PYKE01000133.1	Protein Homology	CDS	13474	14535	.	-	0	ID=cds-WP_000550641.1;Parent=gene-C9F05_RS09775;Dbxref=GenBank:WP_000550641.1;Name=WP_000550641.1;gbkey=CDS;gene=yncE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460545.1;locus_tag=C9F05_RS09775;product=7-bladed beta-propeller protein YncE;protein_id=WP_000550641.1;transl_table=11
##sequence-region NZ_PYKE01000039.1 1 52160
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000039.1	RefSeq	region	1	52160	.	+	.	ID=NZ_PYKE01000039.1:1..52160;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000039.1	RefSeq	pseudogene	1	193	.	+	.	ID=gene-C9F05_RS02545;Name=C9F05_RS02545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS02545;old_locus_tag=C9F05_02585;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000039.1	Protein Homology	CDS	1	193	.	+	1	ID=cds-C9F05_RS02545;Parent=gene-C9F05_RS02545;Note=unknown function%3B in E. coli the aegA gene is regulated by Fnr%2C NarXL%2C and NarQ (but not ArcA)%2C induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461414.1;locus_tag=C9F05_RS02545;partial=true;product=oxidoreductase FeS-binding subunit;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	642	1940	.	-	.	ID=gene-C9F05_RS02550;Name=pbp4b;gbkey=Gene;gene=pbp4b;gene_biotype=protein_coding;locus_tag=C9F05_RS02550;old_locus_tag=C9F05_02595
NZ_PYKE01000039.1	Protein Homology	CDS	642	1940	.	-	0	ID=cds-WP_000673294.1;Parent=gene-C9F05_RS02550;Dbxref=GenBank:WP_000673294.1;Name=WP_000673294.1;gbkey=CDS;gene=pbp4b;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461413.1;locus_tag=C9F05_RS02550;product=penicillin binding protein PBP4B;protein_id=WP_000673294.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	2144	2719	.	+	.	ID=gene-C9F05_RS02555;Name=nudK;gbkey=Gene;gene=nudK;gene_biotype=protein_coding;locus_tag=C9F05_RS02555;old_locus_tag=C9F05_02600
NZ_PYKE01000039.1	Protein Homology	CDS	2144	2719	.	+	0	ID=cds-WP_000084037.1;Parent=gene-C9F05_RS02555;Dbxref=GenBank:WP_000084037.1;Name=WP_000084037.1;Ontology_term=GO:0016818,GO:0046872;gbkey=CDS;gene=nudK;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461412.1;locus_tag=C9F05_RS02555;product=GDP-mannose pyrophosphatase NudK;protein_id=WP_000084037.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	2844	3887	.	+	.	ID=gene-C9F05_RS02560;Name=C9F05_RS02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02560;old_locus_tag=C9F05_02605
NZ_PYKE01000039.1	Protein Homology	CDS	2844	3887	.	+	0	ID=cds-WP_135370005.1;Parent=gene-C9F05_RS02560;Dbxref=GenBank:WP_135370005.1;Name=WP_135370005.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461411.1;locus_tag=C9F05_RS02560;product=DUF1176 domain-containing protein;protein_id=WP_135370005.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	4015	4245	.	+	.	ID=gene-C9F05_RS02565;Name=C9F05_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02565;old_locus_tag=C9F05_02610
NZ_PYKE01000039.1	Protein Homology	CDS	4015	4245	.	+	0	ID=cds-WP_000700635.1;Parent=gene-C9F05_RS02565;Dbxref=GenBank:WP_000700635.1;Name=WP_000700635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461410.1;locus_tag=C9F05_RS02565;product=hypothetical protein;protein_id=WP_000700635.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	4308	6308	.	-	.	ID=gene-C9F05_RS02570;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=C9F05_RS02570;old_locus_tag=C9F05_02615
NZ_PYKE01000039.1	Protein Homology	CDS	4308	6308	.	-	0	ID=cds-WP_135370006.1;Parent=gene-C9F05_RS02570;Dbxref=GenBank:WP_135370006.1;Name=WP_135370006.1;Ontology_term=GO:0004802;gbkey=CDS;gene=tkt;go_function=transketolase activity|0004802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461409.1;locus_tag=C9F05_RS02570;product=transketolase;protein_id=WP_135370006.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	6328	7278	.	-	.	ID=gene-C9F05_RS02575;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=C9F05_RS02575;old_locus_tag=C9F05_02620
NZ_PYKE01000039.1	Protein Homology	CDS	6328	7278	.	-	0	ID=cds-WP_135370007.1;Parent=gene-C9F05_RS02575;Dbxref=GenBank:WP_135370007.1;Name=WP_135370007.1;Ontology_term=GO:0006098,GO:0004801,GO:0005737;gbkey=CDS;gene=tal;go_component=cytoplasm|0005737||IEA;go_function=transaldolase activity|0004801||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461408.1;locus_tag=C9F05_RS02575;product=transaldolase;protein_id=WP_135370007.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	7550	9829	.	+	.	ID=gene-C9F05_RS02580;Name=maeB;gbkey=Gene;gene=maeB;gene_biotype=protein_coding;locus_tag=C9F05_RS02580;old_locus_tag=C9F05_02630
NZ_PYKE01000039.1	Protein Homology	CDS	7550	9829	.	+	0	ID=cds-WP_000344299.1;Parent=gene-C9F05_RS02580;Dbxref=GenBank:WP_000344299.1;Name=WP_000344299.1;gbkey=CDS;gene=maeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461407.1;locus_tag=C9F05_RS02580;product=NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase;protein_id=WP_000344299.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	10246	10581	.	+	.	ID=gene-C9F05_RS02585;Name=eutS;gbkey=Gene;gene=eutS;gene_biotype=protein_coding;locus_tag=C9F05_RS02585;old_locus_tag=C9F05_02635
NZ_PYKE01000039.1	Protein Homology	CDS	10246	10581	.	+	0	ID=cds-WP_001031445.1;Parent=gene-C9F05_RS02585;Dbxref=GenBank:WP_001031445.1;Name=WP_001031445.1;gbkey=CDS;gene=eutS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461405.1;locus_tag=C9F05_RS02585;product=ethanolamine utilization microcompartment protein EutS;protein_id=WP_001031445.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	10594	11073	.	+	.	ID=gene-C9F05_RS02590;Name=eutP;gbkey=Gene;gene=eutP;gene_biotype=protein_coding;locus_tag=C9F05_RS02590;old_locus_tag=C9F05_02640
NZ_PYKE01000039.1	Protein Homology	CDS	10594	11073	.	+	0	ID=cds-WP_000820751.1;Parent=gene-C9F05_RS02590;Dbxref=GenBank:WP_000820751.1;Name=WP_000820751.1;gbkey=CDS;gene=eutP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461404.1;locus_tag=C9F05_RS02590;product=ethanolamine utilization acetate kinase EutP;protein_id=WP_000820751.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	11051	11740	.	+	.	ID=gene-C9F05_RS02595;Name=eutQ;gbkey=Gene;gene=eutQ;gene_biotype=protein_coding;locus_tag=C9F05_RS02595;old_locus_tag=C9F05_02645
NZ_PYKE01000039.1	Protein Homology	CDS	11051	11740	.	+	0	ID=cds-WP_000733867.1;Parent=gene-C9F05_RS02595;Dbxref=GenBank:WP_000733867.1;Name=WP_000733867.1;gbkey=CDS;gene=eutQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461403.1;locus_tag=C9F05_RS02595;product=ethanolamine utilization acetate kinase EutQ;protein_id=WP_000733867.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	11737	12540	.	+	.	ID=gene-C9F05_RS02600;Name=eutT;gbkey=Gene;gene=eutT;gene_biotype=protein_coding;locus_tag=C9F05_RS02600;old_locus_tag=C9F05_02650
NZ_PYKE01000039.1	Protein Homology	CDS	11737	12540	.	+	0	ID=cds-WP_135370008.1;Parent=gene-C9F05_RS02600;Dbxref=GenBank:WP_135370008.1;Name=WP_135370008.1;Ontology_term=GO:0006580,GO:0008817;gbkey=CDS;gene=eutT;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=ethanolamine metabolic process|0006580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461402.1;locus_tag=C9F05_RS02600;product=ethanolamine utilization cob(I)yrinic acid a%2Cc-diamide adenosyltransferase EutT;protein_id=WP_135370008.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	12537	13553	.	+	.	ID=gene-C9F05_RS02605;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=C9F05_RS02605;old_locus_tag=C9F05_02655
NZ_PYKE01000039.1	Protein Homology	CDS	12537	13553	.	+	0	ID=cds-WP_000582927.1;Parent=gene-C9F05_RS02605;Dbxref=GenBank:WP_000582927.1;Name=WP_000582927.1;Ontology_term=GO:0006086,GO:0008959;gbkey=CDS;gene=pta;go_function=phosphate acetyltransferase activity|0008959||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461401.1;locus_tag=C9F05_RS02605;product=phosphate acetyltransferase;protein_id=WP_000582927.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	13594	13884	.	+	.	ID=gene-C9F05_RS02610;Name=eutM;gbkey=Gene;gene=eutM;gene_biotype=protein_coding;locus_tag=C9F05_RS02610;old_locus_tag=C9F05_02660
NZ_PYKE01000039.1	Protein Homology	CDS	13594	13884	.	+	0	ID=cds-WP_000387716.1;Parent=gene-C9F05_RS02610;Dbxref=GenBank:WP_000387716.1;Name=WP_000387716.1;gbkey=CDS;gene=eutM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461400.1;locus_tag=C9F05_RS02610;product=ethanolamine utilization microcompartment protein EutM;protein_id=WP_000387716.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	13997	14284	.	+	.	ID=gene-C9F05_RS02615;Name=eutN;gbkey=Gene;gene=eutN;gene_biotype=protein_coding;locus_tag=C9F05_RS02615;old_locus_tag=C9F05_02665
NZ_PYKE01000039.1	Protein Homology	CDS	13997	14284	.	+	0	ID=cds-WP_001522340.1;Parent=gene-C9F05_RS02615;Dbxref=GenBank:WP_001522340.1;Name=WP_001522340.1;gbkey=CDS;gene=eutN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416951.1;locus_tag=C9F05_RS02615;product=ethanolamine utilization microcompartment protein EutN;protein_id=WP_001522340.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	14296	15699	.	+	.	ID=gene-C9F05_RS02620;Name=C9F05_RS02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02620;old_locus_tag=C9F05_02670
NZ_PYKE01000039.1	Protein Homology	CDS	14296	15699	.	+	0	ID=cds-WP_001075640.1;Parent=gene-C9F05_RS02620;Dbxref=GenBank:WP_001075640.1;Name=WP_001075640.1;Ontology_term=GO:0004029,GO:0008774;gbkey=CDS;go_function=aldehyde dehydrogenase (NAD+) activity|0004029||IEA,acetaldehyde dehydrogenase (acetylating) activity|0008774||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461398.1;locus_tag=C9F05_RS02620;product=aldehyde dehydrogenase family protein;protein_id=WP_001075640.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	15710	16549	.	+	.	ID=gene-C9F05_RS02625;Name=eutJ;gbkey=Gene;gene=eutJ;gene_biotype=protein_coding;locus_tag=C9F05_RS02625;old_locus_tag=C9F05_02675
NZ_PYKE01000039.1	Protein Homology	CDS	15710	16549	.	+	0	ID=cds-WP_023219835.1;Parent=gene-C9F05_RS02625;Dbxref=GenBank:WP_023219835.1;Name=WP_023219835.1;Ontology_term=GO:0051301,GO:0005515;gbkey=CDS;gene=eutJ;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461397.1;locus_tag=C9F05_RS02625;product=ethanolamine utilization protein EutJ;protein_id=WP_023219835.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	16539	17726	.	+	.	ID=gene-C9F05_RS02630;Name=eutG;gbkey=Gene;gene=eutG;gene_biotype=protein_coding;locus_tag=C9F05_RS02630;old_locus_tag=C9F05_02680
NZ_PYKE01000039.1	Protein Homology	CDS	16539	17726	.	+	0	ID=cds-WP_001147505.1;Parent=gene-C9F05_RS02630;Dbxref=GenBank:WP_001147505.1;Name=WP_001147505.1;Ontology_term=GO:0016491;gbkey=CDS;gene=eutG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461396.1;locus_tag=C9F05_RS02630;product=ethanolamine utilization ethanol dehydrogenase EutG;protein_id=WP_001147505.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	17846	19072	.	+	.	ID=gene-C9F05_RS02635;Name=eutH;gbkey=Gene;gene=eutH;gene_biotype=protein_coding;locus_tag=C9F05_RS02635;old_locus_tag=C9F05_02685
NZ_PYKE01000039.1	Protein Homology	CDS	17846	19072	.	+	0	ID=cds-WP_000512359.1;Parent=gene-C9F05_RS02635;Dbxref=GenBank:WP_000512359.1;Name=WP_000512359.1;Ontology_term=GO:0034229,GO:0034228,GO:0016020;gbkey=CDS;gene=eutH;go_component=membrane|0016020||IEA;go_function=ethanolamine transmembrane transporter activity|0034228||IEA;go_process=ethanolamine transport|0034229||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461395.1;locus_tag=C9F05_RS02635;product=ethanolamine utilization protein EutH;protein_id=WP_000512359.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	19069	20472	.	+	.	ID=gene-C9F05_RS02640;Name=eutA;gbkey=Gene;gene=eutA;gene_biotype=protein_coding;locus_tag=C9F05_RS02640;old_locus_tag=C9F05_02690
NZ_PYKE01000039.1	Protein Homology	CDS	19069	20472	.	+	0	ID=cds-WP_001097522.1;Parent=gene-C9F05_RS02640;Dbxref=GenBank:WP_001097522.1;Name=WP_001097522.1;gbkey=CDS;gene=eutA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461394.1;locus_tag=C9F05_RS02640;product=ethanolamine ammonia-lyase reactivating factor EutA;protein_id=WP_001097522.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	20484	21845	.	+	.	ID=gene-C9F05_RS02645;Name=eutB;gbkey=Gene;gene=eutB;gene_biotype=protein_coding;locus_tag=C9F05_RS02645;old_locus_tag=C9F05_02695
NZ_PYKE01000039.1	Protein Homology	CDS	20484	21845	.	+	0	ID=cds-WP_000769990.1;Parent=gene-C9F05_RS02645;Dbxref=GenBank:WP_000769990.1;Name=WP_000769990.1;gbkey=CDS;gene=eutB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461393.1;locus_tag=C9F05_RS02645;product=ethanolamine ammonia-lyase subunit alpha;protein_id=WP_000769990.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	21864	22760	.	+	.	ID=gene-C9F05_RS02650;Name=eutC;gbkey=Gene;gene=eutC;gene_biotype=protein_coding;locus_tag=C9F05_RS02650;old_locus_tag=C9F05_02700
NZ_PYKE01000039.1	Protein Homology	CDS	21864	22760	.	+	0	ID=cds-WP_000372354.1;Parent=gene-C9F05_RS02650;Dbxref=GenBank:WP_000372354.1;Name=WP_000372354.1;Ontology_term=GO:0006520,GO:0008851;gbkey=CDS;gene=eutC;go_function=ethanolamine ammonia-lyase activity|0008851||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461392.1;locus_tag=C9F05_RS02650;product=ethanolamine ammonia-lyase subunit EutC;protein_id=WP_000372354.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	22770	23429	.	+	.	ID=gene-C9F05_RS02655;Name=eutL;gbkey=Gene;gene=eutL;gene_biotype=protein_coding;locus_tag=C9F05_RS02655;old_locus_tag=C9F05_02705
NZ_PYKE01000039.1	Protein Homology	CDS	22770	23429	.	+	0	ID=cds-WP_135370009.1;Parent=gene-C9F05_RS02655;Dbxref=GenBank:WP_135370009.1;Name=WP_135370009.1;Ontology_term=GO:0005198,GO:0031469;gbkey=CDS;gene=eutL;go_component=bacterial microcompartment|0031469||IEA;go_function=structural molecule activity|0005198||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461391.1;locus_tag=C9F05_RS02655;product=ethanolamine utilization microcompartment protein EutL;protein_id=WP_135370009.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	23442	23936	.	+	.	ID=gene-C9F05_RS02660;Name=eutK;gbkey=Gene;gene=eutK;gene_biotype=protein_coding;locus_tag=C9F05_RS02660;old_locus_tag=C9F05_02710
NZ_PYKE01000039.1	Protein Homology	CDS	23442	23936	.	+	0	ID=cds-WP_023193825.1;Parent=gene-C9F05_RS02660;Dbxref=GenBank:WP_023193825.1;Name=WP_023193825.1;gbkey=CDS;gene=eutK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461390.1;locus_tag=C9F05_RS02660;product=ethanolamine utilization microcompartment protein EutK;protein_id=WP_023193825.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	23984	25036	.	+	.	ID=gene-C9F05_RS02665;Name=eutR;gbkey=Gene;gene=eutR;gene_biotype=protein_coding;locus_tag=C9F05_RS02665;old_locus_tag=C9F05_02715
NZ_PYKE01000039.1	Protein Homology	CDS	23984	25036	.	+	0	ID=cds-WP_000753665.1;Parent=gene-C9F05_RS02665;Dbxref=GenBank:WP_000753665.1;Name=WP_000753665.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=eutR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461389.1;locus_tag=C9F05_RS02665;product=HTH-type transcriptional regulator EutR;protein_id=WP_000753665.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	25215	25913	.	+	.	ID=gene-C9F05_RS02670;Name=C9F05_RS02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02670;old_locus_tag=C9F05_02720
NZ_PYKE01000039.1	Protein Homology	CDS	25215	25913	.	+	0	ID=cds-WP_001172085.1;Parent=gene-C9F05_RS02670;Dbxref=GenBank:WP_001172085.1;Name=WP_001172085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001172085.1;locus_tag=C9F05_RS02670;product=hypothetical protein;protein_id=WP_001172085.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	25960	26859	.	-	.	ID=gene-C9F05_RS02675;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=C9F05_RS02675;old_locus_tag=C9F05_02725
NZ_PYKE01000039.1	Protein Homology	CDS	25960	26859	.	-	0	ID=cds-WP_001630180.1;Parent=gene-C9F05_RS02675;Dbxref=GenBank:WP_001630180.1;Name=WP_001630180.1;Ontology_term=GO:0006779,GO:0004109;gbkey=CDS;gene=hemF;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461386.1;locus_tag=C9F05_RS02675;product=oxygen-dependent coproporphyrinogen oxidase;protein_id=WP_001630180.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	26862	27731	.	-	.	ID=gene-C9F05_RS02680;Name=amiA;gbkey=Gene;gene=amiA;gene_biotype=protein_coding;locus_tag=C9F05_RS02680;old_locus_tag=C9F05_02730
NZ_PYKE01000039.1	Protein Homology	CDS	26862	27731	.	-	0	ID=cds-WP_000102880.1;Parent=gene-C9F05_RS02680;Dbxref=GenBank:WP_000102880.1;Name=WP_000102880.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=amiA;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461385.1;locus_tag=C9F05_RS02680;product=N-acetylmuramoyl-L-alanine amidase AmiA;protein_id=WP_000102880.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	27944	28369	.	+	.	ID=gene-C9F05_RS02685;Name=C9F05_RS02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02685;old_locus_tag=C9F05_02735
NZ_PYKE01000039.1	Protein Homology	CDS	27944	28369	.	+	0	ID=cds-WP_000406008.1;Parent=gene-C9F05_RS02685;Dbxref=GenBank:WP_000406008.1;Name=WP_000406008.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311332.2;locus_tag=C9F05_RS02685;product=GNAT family acetyltransferase;protein_id=WP_000406008.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	28356	28805	.	+	.	ID=gene-C9F05_RS02690;Name=C9F05_RS02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02690;old_locus_tag=C9F05_02740
NZ_PYKE01000039.1	Protein Homology	CDS	28356	28805	.	+	0	ID=cds-WP_000842940.1;Parent=gene-C9F05_RS02690;Dbxref=GenBank:WP_000842940.1;Name=WP_000842940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461383.1;locus_tag=C9F05_RS02690;product=DUF2919 domain-containing protein;protein_id=WP_000842940.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	28867	29442	.	+	.	ID=gene-C9F05_RS02695;Name=C9F05_RS02695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02695;old_locus_tag=C9F05_02745
NZ_PYKE01000039.1	Protein Homology	CDS	28867	29442	.	+	0	ID=cds-WP_000838968.1;Parent=gene-C9F05_RS02695;Dbxref=GenBank:WP_000838968.1;Name=WP_000838968.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461382.1;locus_tag=C9F05_RS02695;product=RpoE-regulated lipoprotein;protein_id=WP_000838968.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	29537	30436	.	+	.	ID=gene-C9F05_RS02700;Name=C9F05_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02700;old_locus_tag=C9F05_02750
NZ_PYKE01000039.1	Protein Homology	CDS	29537	30436	.	+	0	ID=cds-WP_135370010.1;Parent=gene-C9F05_RS02700;Dbxref=GenBank:WP_135370010.1;Name=WP_135370010.1;Ontology_term=GO:0004601,GO:0020037;gbkey=CDS;go_function=peroxidase activity|0004601||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461381.1;locus_tag=C9F05_RS02700;product=Dyp-type peroxidase;protein_id=WP_135370010.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	30674	31465	.	+	.	ID=gene-C9F05_RS02705;Name=ucpA;gbkey=Gene;gene=ucpA;gene_biotype=protein_coding;locus_tag=C9F05_RS02705;old_locus_tag=C9F05_02755
NZ_PYKE01000039.1	Protein Homology	CDS	30674	31465	.	+	0	ID=cds-WP_000517460.1;Parent=gene-C9F05_RS02705;Dbxref=GenBank:WP_000517460.1;Name=WP_000517460.1;gbkey=CDS;gene=ucpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461380.1;locus_tag=C9F05_RS02705;product=SDR family oxidoreductase UcpA;protein_id=WP_000517460.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	31623	32639	.	+	.	ID=gene-C9F05_RS02710;Name=cysP;gbkey=Gene;gene=cysP;gene_biotype=protein_coding;locus_tag=C9F05_RS02710;old_locus_tag=C9F05_02760
NZ_PYKE01000039.1	Protein Homology	CDS	31623	32639	.	+	0	ID=cds-WP_079928221.1;Parent=gene-C9F05_RS02710;Dbxref=GenBank:WP_079928221.1;Name=WP_079928221.1;gbkey=CDS;gene=cysP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461379.1;locus_tag=C9F05_RS02710;product=thiosulfate/sulfate ABC transporter substrate-binding protein CysP;protein_id=WP_079928221.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	32639	33472	.	+	.	ID=gene-C9F05_RS02715;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=C9F05_RS02715;old_locus_tag=C9F05_02765
NZ_PYKE01000039.1	Protein Homology	CDS	32639	33472	.	+	0	ID=cds-WP_000881746.1;Parent=gene-C9F05_RS02715;Dbxref=GenBank:WP_000881746.1;Name=WP_000881746.1;Ontology_term=GO:0055085,GO:1902358,GO:0015419,GO:0016020;gbkey=CDS;gene=cysT;go_component=membrane|0016020||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=transmembrane transport|0055085||IEA,sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000458418.1;locus_tag=C9F05_RS02715;product=sulfate/thiosulfate ABC transporter permease CysT;protein_id=WP_000881746.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	33472	34347	.	+	.	ID=gene-C9F05_RS02720;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=C9F05_RS02720;old_locus_tag=C9F05_02770
NZ_PYKE01000039.1	Protein Homology	CDS	33472	34347	.	+	0	ID=cds-WP_000852705.1;Parent=gene-C9F05_RS02720;Dbxref=GenBank:WP_000852705.1;Name=WP_000852705.1;Ontology_term=GO:0055085,GO:1902358,GO:0015419,GO:0016020;gbkey=CDS;gene=cysW;go_component=membrane|0016020||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=transmembrane transport|0055085||IEA,sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461377.1;locus_tag=C9F05_RS02720;product=sulfate/thiosulfate ABC transporter permease CysW;protein_id=WP_000852705.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	34337	35434	.	+	.	ID=gene-C9F05_RS02725;Name=cysA;gbkey=Gene;gene=cysA;gene_biotype=protein_coding;locus_tag=C9F05_RS02725;old_locus_tag=C9F05_02775
NZ_PYKE01000039.1	Protein Homology	CDS	34337	35434	.	+	0	ID=cds-WP_000021063.1;Parent=gene-C9F05_RS02725;Dbxref=GenBank:WP_000021063.1;Name=WP_000021063.1;Ontology_term=GO:1902358,GO:0005524,GO:0015419,GO:0016020,GO:0043190;gbkey=CDS;gene=cysA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461376.1;locus_tag=C9F05_RS02725;product=sulfate/thiosulfate ABC transporter ATP-binding protein CysA;protein_id=WP_000021063.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	35502	36413	.	+	.	ID=gene-C9F05_RS02730;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=C9F05_RS02730;old_locus_tag=C9F05_02780
NZ_PYKE01000039.1	Protein Homology	CDS	35502	36413	.	+	0	ID=cds-WP_135370011.1;Parent=gene-C9F05_RS02730;Dbxref=GenBank:WP_135370011.1;Name=WP_135370011.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysM;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461375.1;locus_tag=C9F05_RS02730;product=cysteine synthase CysM;protein_id=WP_135370011.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	36544	37083	.	-	.	ID=gene-C9F05_RS02740;Name=C9F05_RS02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02740;old_locus_tag=C9F05_02790
NZ_PYKE01000039.1	Protein Homology	CDS	36544	37083	.	-	0	ID=cds-WP_135370012.1;Parent=gene-C9F05_RS02740;Dbxref=GenBank:WP_135370012.1;Name=WP_135370012.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461374.1;locus_tag=C9F05_RS02740;product=transglycosylase domain-containing protein;protein_id=WP_135370012.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	37096	37476	.	-	.	ID=gene-C9F05_RS02745;Name=C9F05_RS02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02745;old_locus_tag=C9F05_02795
NZ_PYKE01000039.1	Protein Homology	CDS	37096	37476	.	-	0	ID=cds-WP_000710730.1;Parent=gene-C9F05_RS02745;Dbxref=GenBank:WP_000710730.1;Name=WP_000710730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461373.2;locus_tag=C9F05_RS02745;product=YfeK family protein;protein_id=WP_000710730.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	37535	38254	.	-	.	ID=gene-C9F05_RS02750;Name=C9F05_RS02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02750;old_locus_tag=C9F05_02800
NZ_PYKE01000039.1	Protein Homology	CDS	37535	38254	.	-	0	ID=cds-WP_135370013.1;Parent=gene-C9F05_RS02750;Dbxref=GenBank:WP_135370013.1;Name=WP_135370013.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461372.1;locus_tag=C9F05_RS02750;product=type 1 glutamine amidotransferase;protein_id=WP_135370013.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	38269	39561	.	-	.	ID=gene-C9F05_RS02755;Name=ptsJ;gbkey=Gene;gene=ptsJ;gene_biotype=protein_coding;locus_tag=C9F05_RS02755;old_locus_tag=C9F05_02805
NZ_PYKE01000039.1	Protein Homology	CDS	38269	39561	.	-	0	ID=cds-WP_079845629.1;Parent=gene-C9F05_RS02755;Dbxref=GenBank:WP_079845629.1;Name=WP_079845629.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ptsJ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461371.1;locus_tag=C9F05_RS02755;product=MocR-like B6 salvage transcription factor PtsJ;protein_id=WP_079845629.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	39644	40510	.	+	.	ID=gene-C9F05_RS02760;Name=pdxK;gbkey=Gene;gene=pdxK;gene_biotype=protein_coding;gene_synonym=thiJ;locus_tag=C9F05_RS02760;old_locus_tag=C9F05_02810
NZ_PYKE01000039.1	Protein Homology	CDS	39644	40510	.	+	0	ID=cds-WP_000529613.1;Parent=gene-C9F05_RS02760;Dbxref=GenBank:WP_000529613.1;Name=WP_000529613.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxK;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461370.1;locus_tag=C9F05_RS02760;product=pyridoxine/pyridoxal/pyridoxamine kinase;protein_id=WP_000529613.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	40507	40746	.	+	.	ID=gene-C9F05_RS02765;Name=C9F05_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02765;old_locus_tag=C9F05_02815
NZ_PYKE01000039.1	Protein Homology	CDS	40507	40746	.	+	0	ID=cds-WP_000844541.1;Parent=gene-C9F05_RS02765;Dbxref=GenBank:WP_000844541.1;Name=WP_000844541.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461369.1;locus_tag=C9F05_RS02765;product=hypothetical protein;protein_id=WP_000844541.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	40909	41418	.	-	.	ID=gene-C9F05_RS02770;Name=crr;gbkey=Gene;gene=crr;gene_biotype=protein_coding;locus_tag=C9F05_RS02770;old_locus_tag=C9F05_02820
NZ_PYKE01000039.1	Protein Homology	CDS	40909	41418	.	-	0	ID=cds-WP_000522253.1;Parent=gene-C9F05_RS02770;Dbxref=GenBank:WP_000522253.1;Name=WP_000522253.1;Ontology_term=GO:0009401;gbkey=CDS;gene=crr;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015833547.1;locus_tag=C9F05_RS02770;product=PTS glucose transporter subunit IIA;protein_id=WP_000522253.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	41459	43186	.	-	.	ID=gene-C9F05_RS02775;Name=ptsI;gbkey=Gene;gene=ptsI;gene_biotype=protein_coding;locus_tag=C9F05_RS02775;old_locus_tag=C9F05_02825
NZ_PYKE01000039.1	Protein Homology	CDS	41459	43186	.	-	0	ID=cds-WP_000623114.1;Parent=gene-C9F05_RS02775;Dbxref=GenBank:WP_000623114.1;Name=WP_000623114.1;gbkey=CDS;gene=ptsI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461367.1;locus_tag=C9F05_RS02775;product=phosphoenolpyruvate-protein phosphotransferase PtsI;protein_id=WP_000623114.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	43235	43492	.	-	.	ID=gene-C9F05_RS02780;Name=ptsH;gbkey=Gene;gene=ptsH;gene_biotype=protein_coding;locus_tag=C9F05_RS02780;old_locus_tag=C9F05_02830
NZ_PYKE01000039.1	Protein Homology	CDS	43235	43492	.	-	0	ID=cds-WP_000487600.1;Parent=gene-C9F05_RS02780;Dbxref=GenBank:WP_000487600.1;Name=WP_000487600.1;gbkey=CDS;gene=ptsH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003038086.1;locus_tag=C9F05_RS02780;product=phosphocarrier protein Hpr;protein_id=WP_000487600.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	43876	44847	.	-	.	ID=gene-C9F05_RS02785;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=C9F05_RS02785;old_locus_tag=C9F05_02835
NZ_PYKE01000039.1	Protein Homology	CDS	43876	44847	.	-	0	ID=cds-WP_000036904.1;Parent=gene-C9F05_RS02785;Dbxref=GenBank:WP_000036904.1;Name=WP_000036904.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysK;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000034402.1;locus_tag=C9F05_RS02785;product=cysteine synthase A;protein_id=WP_000036904.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	45011	45772	.	-	.	ID=gene-C9F05_RS02790;Name=cysZ;gbkey=Gene;gene=cysZ;gene_biotype=protein_coding;locus_tag=C9F05_RS02790;old_locus_tag=C9F05_02840
NZ_PYKE01000039.1	Protein Homology	CDS	45011	45772	.	-	0	ID=cds-WP_000255008.1;Parent=gene-C9F05_RS02790;Dbxref=GenBank:WP_000255008.1;Name=WP_000255008.1;Ontology_term=GO:0000103,GO:0015116,GO:0005886;gbkey=CDS;gene=cysZ;go_component=plasma membrane|0005886||IEA;go_function=sulfate transmembrane transporter activity|0015116||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461364.1;locus_tag=C9F05_RS02790;product=sulfate transporter CysZ;protein_id=WP_000255008.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	46004	46990	.	+	.	ID=gene-C9F05_RS02795;Name=zipA;gbkey=Gene;gene=zipA;gene_biotype=protein_coding;locus_tag=C9F05_RS02795;old_locus_tag=C9F05_02845
NZ_PYKE01000039.1	Protein Homology	CDS	46004	46990	.	+	0	ID=cds-WP_000983126.1;Parent=gene-C9F05_RS02795;Dbxref=GenBank:WP_000983126.1;Name=WP_000983126.1;Ontology_term=GO:0000917,GO:0005515,GO:0016020;gbkey=CDS;gene=zipA;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461363.1;locus_tag=C9F05_RS02795;product=cell division protein ZipA;protein_id=WP_000983126.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	47062	49077	.	+	.	ID=gene-C9F05_RS02800;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=C9F05_RS02800;old_locus_tag=C9F05_02850
NZ_PYKE01000039.1	Protein Homology	CDS	47062	49077	.	+	0	ID=cds-WP_017465500.1;Parent=gene-C9F05_RS02800;Dbxref=GenBank:WP_017465500.1;Name=WP_017465500.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461362.1;locus_tag=C9F05_RS02800;product=NAD-dependent DNA ligase LigA;protein_id=WP_017465500.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	49079	49297	.	+	.	ID=gene-C9F05_RS02805;Name=C9F05_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02805;old_locus_tag=C9F05_02855
NZ_PYKE01000039.1	Protein Homology	CDS	49079	49297	.	+	0	ID=cds-WP_001519708.1;Parent=gene-C9F05_RS02805;Dbxref=GenBank:WP_001519708.1;Name=WP_001519708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588464.1;locus_tag=C9F05_RS02805;product=DUF3820 family protein;protein_id=WP_001519708.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	49294	50292	.	-	.	ID=gene-C9F05_RS02810;Name=C9F05_RS02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02810;old_locus_tag=C9F05_02860
NZ_PYKE01000039.1	Protein Homology	CDS	49294	50292	.	-	0	ID=cds-WP_000765569.1;Parent=gene-C9F05_RS02810;Dbxref=GenBank:WP_000765569.1;Name=WP_000765569.1;Ontology_term=GO:0006810,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461360.2;locus_tag=C9F05_RS02810;product=bile acid:sodium symporter family protein;protein_id=WP_000765569.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	50382	51308	.	+	.	ID=gene-C9F05_RS02815;Name=C9F05_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02815;old_locus_tag=C9F05_02865
NZ_PYKE01000039.1	Protein Homology	CDS	50382	51308	.	+	0	ID=cds-WP_031605640.1;Parent=gene-C9F05_RS02815;Dbxref=GenBank:WP_031605640.1;Name=WP_031605640.1;Ontology_term=GO:0003677,GO:0003700,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461359.1;locus_tag=C9F05_RS02815;product=LysR family transcriptional regulator;protein_id=WP_031605640.1;transl_table=11
NZ_PYKE01000039.1	RefSeq	gene	51370	52131	.	-	.	ID=gene-C9F05_RS02820;Name=C9F05_RS02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02820;old_locus_tag=C9F05_02870
NZ_PYKE01000039.1	Protein Homology	CDS	51370	52131	.	-	0	ID=cds-WP_000722926.1;Parent=gene-C9F05_RS02820;Dbxref=GenBank:WP_000722926.1;Name=WP_000722926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461358.1;locus_tag=C9F05_RS02820;product=outer membrane protein;protein_id=WP_000722926.1;transl_table=11
##sequence-region NZ_PYKE01000099.1 1 250
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000099.1	RefSeq	region	1	250	.	+	.	ID=NZ_PYKE01000099.1:1..250;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
##sequence-region NZ_PYKE01000253.1 1 242
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000253.1	RefSeq	region	1	242	.	+	.	ID=NZ_PYKE01000253.1:1..242;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000253.1	RefSeq	gene	1	208	.	-	.	ID=gene-C9F05_RS16485;Name=C9F05_RS16485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16485;old_locus_tag=C9F05_16960;partial=true;start_range=.,1
NZ_PYKE01000253.1	Protein Homology	CDS	1	208	.	-	0	ID=cds-WP_217810214.1;Parent=gene-C9F05_RS16485;Dbxref=GenBank:WP_217810214.1;Name=WP_217810214.1;Ontology_term=GO:0006814,GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459059.1;locus_tag=C9F05_RS16485;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_217810214.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000103.1 1 239
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000103.1	RefSeq	region	1	239	.	+	.	ID=NZ_PYKE01000103.1:1..239;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
##sequence-region NZ_PYKE01000278.1 1 14455
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000278.1	RefSeq	region	1	14455	.	+	.	ID=NZ_PYKE01000278.1:1..14455;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000278.1	RefSeq	gene	1	298	.	-	.	ID=gene-C9F05_RS18510;Name=C9F05_RS18510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18510;old_locus_tag=C9F05_19040;partial=true;start_range=.,1
NZ_PYKE01000278.1	Protein Homology	CDS	1	298	.	-	0	ID=cds-WP_167854921.1;Parent=gene-C9F05_RS18510;Dbxref=GenBank:WP_167854921.1;Name=WP_167854921.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459540.1;locus_tag=C9F05_RS18510;partial=true;product=fimbria/pilus periplasmic chaperone;protein_id=WP_167854921.1;start_range=.,1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	342	875	.	-	.	ID=gene-C9F05_RS18515;Name=fimI;gbkey=Gene;gene=fimI;gene_biotype=protein_coding;locus_tag=C9F05_RS18515;old_locus_tag=C9F05_19045
NZ_PYKE01000278.1	Protein Homology	CDS	342	875	.	-	0	ID=cds-WP_135370531.1;Parent=gene-C9F05_RS18515;Dbxref=GenBank:WP_135370531.1;Name=WP_135370531.1;gbkey=CDS;gene=fimI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459539.1;locus_tag=C9F05_RS18515;product=type 1 fimbrial protein subunit FimI;protein_id=WP_135370531.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	950	1507	.	-	.	ID=gene-C9F05_RS18520;Name=fimA;gbkey=Gene;gene=fimA;gene_biotype=protein_coding;locus_tag=C9F05_RS18520;old_locus_tag=C9F05_19050
NZ_PYKE01000278.1	Protein Homology	CDS	950	1507	.	-	0	ID=cds-WP_135370532.1;Parent=gene-C9F05_RS18520;Dbxref=GenBank:WP_135370532.1;Name=WP_135370532.1;gbkey=CDS;gene=fimA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459538.3;locus_tag=C9F05_RS18520;product=type 1 fimbrial protein subunit FimA;protein_id=WP_135370532.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	2054	2920	.	+	.	ID=gene-C9F05_RS18530;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=C9F05_RS18530;old_locus_tag=C9F05_19060
NZ_PYKE01000278.1	Protein Homology	CDS	2054	2920	.	+	0	ID=cds-WP_000729165.1;Parent=gene-C9F05_RS18530;Dbxref=GenBank:WP_000729165.1;Name=WP_000729165.1;Ontology_term=GO:0004488;gbkey=CDS;gene=folD;go_function=methylenetetrahydrofolate dehydrogenase (NADP+) activity|0004488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459537.1;locus_tag=C9F05_RS18530;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD;protein_id=WP_000729165.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	2922	3134	.	+	.	ID=gene-C9F05_RS18535;Name=ybcJ;gbkey=Gene;gene=ybcJ;gene_biotype=protein_coding;locus_tag=C9F05_RS18535;old_locus_tag=C9F05_19065
NZ_PYKE01000278.1	Protein Homology	CDS	2922	3134	.	+	0	ID=cds-WP_000190280.1;Parent=gene-C9F05_RS18535;Dbxref=GenBank:WP_000190280.1;Name=WP_000190280.1;gbkey=CDS;gene=ybcJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459536.1;locus_tag=C9F05_RS18535;product=ribosome-associated protein YbcJ;protein_id=WP_000190280.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	3261	3806	.	+	.	ID=gene-C9F05_RS18540;Name=C9F05_RS18540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18540;old_locus_tag=C9F05_19070
NZ_PYKE01000278.1	Protein Homology	CDS	3261	3806	.	+	0	ID=cds-WP_001143571.1;Parent=gene-C9F05_RS18540;Dbxref=GenBank:WP_001143571.1;Name=WP_001143571.1;Ontology_term=GO:0016787,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459535.1;locus_tag=C9F05_RS18540;product=metal-dependent hydrolase;protein_id=WP_001143571.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	3799	4236	.	+	.	ID=gene-C9F05_RS18545;Name=C9F05_RS18545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18545;old_locus_tag=C9F05_19075
NZ_PYKE01000278.1	Protein Homology	CDS	3799	4236	.	+	0	ID=cds-WP_001038573.1;Parent=gene-C9F05_RS18545;Dbxref=GenBank:WP_001038573.1;Name=WP_001038573.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459534.1;locus_tag=C9F05_RS18545;product=STM0539 family protein;protein_id=WP_001038573.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	4233	5057	.	+	.	ID=gene-C9F05_RS18550;Name=C9F05_RS18550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18550;old_locus_tag=C9F05_19080
NZ_PYKE01000278.1	Protein Homology	CDS	4233	5057	.	+	0	ID=cds-WP_000819123.1;Parent=gene-C9F05_RS18550;Dbxref=GenBank:WP_000819123.1;Name=WP_000819123.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459533.1;locus_tag=C9F05_RS18550;product=DUF2145 domain-containing protein;protein_id=WP_000819123.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	5101	6486	.	-	.	ID=gene-C9F05_RS18555;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=C9F05_RS18555;old_locus_tag=C9F05_19085
NZ_PYKE01000278.1	Protein Homology	CDS	5101	6486	.	-	0	ID=cds-WP_000912376.1;Parent=gene-C9F05_RS18555;Dbxref=GenBank:WP_000912376.1;Name=WP_000912376.1;Ontology_term=GO:0006423,GO:0004817,GO:0005524,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA,ATP binding|0005524||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125243.1;locus_tag=C9F05_RS18555;product=cysteine--tRNA ligase;protein_id=WP_000912376.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	6659	7153	.	+	.	ID=gene-C9F05_RS18560;Name=ppiB;gbkey=Gene;gene=ppiB;gene_biotype=protein_coding;locus_tag=C9F05_RS18560;old_locus_tag=C9F05_19090
NZ_PYKE01000278.1	Protein Homology	CDS	6659	7153	.	+	0	ID=cds-WP_000255991.1;Parent=gene-C9F05_RS18560;Dbxref=GenBank:WP_000255991.1;Name=WP_000255991.1;gbkey=CDS;gene=ppiB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465360.1;locus_tag=C9F05_RS18560;product=peptidylprolyl isomerase B;protein_id=WP_000255991.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	7156	7878	.	+	.	ID=gene-C9F05_RS18565;Name=lpxH;gbkey=Gene;gene=lpxH;gene_biotype=protein_coding;locus_tag=C9F05_RS18565;old_locus_tag=C9F05_19095
NZ_PYKE01000278.1	Protein Homology	CDS	7156	7878	.	+	0	ID=cds-WP_039589637.1;Parent=gene-C9F05_RS18565;Dbxref=GenBank:WP_039589637.1;Name=WP_039589637.1;Ontology_term=GO:0009245,GO:0008758,GO:0016462,GO:0005737;gbkey=CDS;gene=lpxH;go_component=cytoplasm|0005737||IEA;go_function=UDP-2%2C3-diacylglucosamine hydrolase activity|0008758||IEA,pyrophosphatase activity|0016462||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459530.1;locus_tag=C9F05_RS18565;product=UDP-2%2C3-diacylglucosamine diphosphatase;protein_id=WP_039589637.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	7996	8505	.	+	.	ID=gene-C9F05_RS18570;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=C9F05_RS18570;old_locus_tag=C9F05_19105
NZ_PYKE01000278.1	Protein Homology	CDS	7996	8505	.	+	0	ID=cds-WP_000098736.1;Parent=gene-C9F05_RS18570;Dbxref=GenBank:WP_000098736.1;Name=WP_000098736.1;Ontology_term=GO:0006189,GO:0009152,GO:0004638,GO:0009320;gbkey=CDS;gene=purE;go_component=phosphoribosylaminoimidazole carboxylase complex|0009320||IEA;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459529.1;locus_tag=C9F05_RS18570;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=WP_000098736.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	8502	9569	.	+	.	ID=gene-C9F05_RS18575;Name=purK;gbkey=Gene;gene=purK;gene_biotype=protein_coding;locus_tag=C9F05_RS18575;old_locus_tag=C9F05_19110
NZ_PYKE01000278.1	Protein Homology	CDS	8502	9569	.	+	0	ID=cds-WP_000815603.1;Parent=gene-C9F05_RS18575;Dbxref=GenBank:WP_000815603.1;Name=WP_000815603.1;Ontology_term=GO:0006189,GO:0004638,GO:0005524,GO:0046872;gbkey=CDS;gene=purK;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459528.1;locus_tag=C9F05_RS18575;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=WP_000815603.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	9610	10503	.	-	.	ID=gene-C9F05_RS18580;Name=C9F05_RS18580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18580;old_locus_tag=C9F05_19115
NZ_PYKE01000278.1	Protein Homology	CDS	9610	10503	.	-	0	ID=cds-WP_000855344.1;Parent=gene-C9F05_RS18580;Dbxref=GenBank:WP_000855344.1;Name=WP_000855344.1;Ontology_term=GO:0006525,GO:0008804;gbkey=CDS;go_function=carbamate kinase activity|0008804||IEA;go_process=arginine metabolic process|0006525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459527.1;locus_tag=C9F05_RS18580;product=carbamate kinase;protein_id=WP_000855344.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	10507	11316	.	-	.	ID=gene-C9F05_RS18585;Name=C9F05_RS18585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18585;old_locus_tag=C9F05_19120
NZ_PYKE01000278.1	Protein Homology	CDS	10507	11316	.	-	0	ID=cds-WP_000821191.1;Parent=gene-C9F05_RS18585;Dbxref=GenBank:WP_000821191.1;Name=WP_000821191.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459526.1;locus_tag=C9F05_RS18585;product=DUF2877 domain-containing protein;protein_id=WP_000821191.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	11328	12587	.	-	.	ID=gene-C9F05_RS18590;Name=C9F05_RS18590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18590;old_locus_tag=C9F05_19125
NZ_PYKE01000278.1	Protein Homology	CDS	11328	12587	.	-	0	ID=cds-WP_061379746.1;Parent=gene-C9F05_RS18590;Dbxref=GenBank:WP_061379746.1;Name=WP_061379746.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459525.1;locus_tag=C9F05_RS18590;product=DUF1116 domain-containing protein;protein_id=WP_061379746.1;transl_table=11
NZ_PYKE01000278.1	RefSeq	gene	12597	14261	.	-	.	ID=gene-C9F05_RS18595;Name=C9F05_RS18595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18595;old_locus_tag=C9F05_19130
NZ_PYKE01000278.1	Protein Homology	CDS	12597	14261	.	-	0	ID=cds-WP_000580909.1;Parent=gene-C9F05_RS18595;Dbxref=GenBank:WP_000580909.1;Name=WP_000580909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459524.1;locus_tag=C9F05_RS18595;product=acyl-CoA synthetase FdrA;protein_id=WP_000580909.1;transl_table=11
##sequence-region NZ_PYKE01000235.1 1 226
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000235.1	RefSeq	region	1	226	.	+	.	ID=NZ_PYKE01000235.1:1..226;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000235.1	RefSeq	gene	1	226	.	-	.	ID=gene-C9F05_RS15380;Name=C9F05_RS15380;end_range=226,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15380;old_locus_tag=C9F05_15815;partial=true;start_range=.,1
NZ_PYKE01000235.1	Protein Homology	CDS	1	226	.	-	2	ID=cds-WP_167854915.1;Parent=gene-C9F05_RS15380;Dbxref=GenBank:WP_167854915.1;Name=WP_167854915.1;Ontology_term=GO:0006814,GO:0016829;end_range=226,.;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462261.1;locus_tag=C9F05_RS15380;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_167854915.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000012.1 1 224
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000012.1	RefSeq	region	1	224	.	+	.	ID=NZ_PYKE01000012.1:1..224;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
##sequence-region NZ_PYKE01000141.1 1 203
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000141.1	RefSeq	region	1	203	.	+	.	ID=NZ_PYKE01000141.1:1..203;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
##sequence-region NZ_PYKE01000056.1 1 14330
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000056.1	RefSeq	region	1	14330	.	+	.	ID=NZ_PYKE01000056.1:1..14330;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000056.1	RefSeq	gene	335	1288	.	+	.	ID=gene-C9F05_RS03400;Name=sopD;gbkey=Gene;gene=sopD;gene_biotype=protein_coding;locus_tag=C9F05_RS03400;old_locus_tag=C9F05_03460
NZ_PYKE01000056.1	Protein Homology	CDS	335	1288	.	+	0	ID=cds-WP_135370028.1;Parent=gene-C9F05_RS03400;Dbxref=GenBank:WP_135370028.1;Name=WP_135370028.1;gbkey=CDS;gene=sopD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461866.1;locus_tag=C9F05_RS03400;product=SPI-1 type III secretion system effector SopD;protein_id=WP_135370028.1;transl_table=11
NZ_PYKE01000056.1	RefSeq	gene	1376	2110	.	-	.	ID=gene-C9F05_RS03405;Name=cysH;gbkey=Gene;gene=cysH;gene_biotype=protein_coding;locus_tag=C9F05_RS03405;old_locus_tag=C9F05_03465
NZ_PYKE01000056.1	Protein Homology	CDS	1376	2110	.	-	0	ID=cds-WP_135370029.1;Parent=gene-C9F05_RS03405;Dbxref=GenBank:WP_135370029.1;Name=WP_135370029.1;Ontology_term=GO:0019379,GO:0004604;gbkey=CDS;gene=cysH;go_function=phosphoadenylyl-sulfate reductase (thioredoxin) activity|0004604||IEA;go_process=sulfate assimilation%2C phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)|0019379||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461867.1;locus_tag=C9F05_RS03405;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_135370029.1;transl_table=11
NZ_PYKE01000056.1	RefSeq	gene	2186	3898	.	-	.	ID=gene-C9F05_RS03415;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=C9F05_RS03415;old_locus_tag=C9F05_03475
NZ_PYKE01000056.1	Protein Homology	CDS	2186	3898	.	-	0	ID=cds-WP_135370030.1;Parent=gene-C9F05_RS03415;Dbxref=GenBank:WP_135370030.1;Name=WP_135370030.1;Ontology_term=GO:0000103,GO:0008652,GO:0004783,GO:0050661,GO:0051539,GO:0009337;gbkey=CDS;gene=cysI;go_component=sulfite reductase complex (NADPH)|0009337||IEA;go_function=sulfite reductase (NADPH) activity|0004783||IEA,NADP binding|0050661||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=sulfate assimilation|0000103||IEA,amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001290736.1;locus_tag=C9F05_RS03415;product=assimilatory sulfite reductase (NADPH) hemoprotein subunit;protein_id=WP_135370030.1;transl_table=11
NZ_PYKE01000056.1	RefSeq	gene	3898	5697	.	-	.	ID=gene-C9F05_RS03420;Name=cysJ;gbkey=Gene;gene=cysJ;gene_biotype=protein_coding;locus_tag=C9F05_RS03420;old_locus_tag=C9F05_03480
NZ_PYKE01000056.1	Protein Homology	CDS	3898	5697	.	-	0	ID=cds-WP_023204597.1;Parent=gene-C9F05_RS03420;Dbxref=GenBank:WP_023204597.1;Name=WP_023204597.1;Ontology_term=GO:0000103,GO:0019344,GO:0004783,GO:0010181,GO:0050660;gbkey=CDS;gene=cysJ;go_function=sulfite reductase (NADPH) activity|0004783||IEA,FMN binding|0010181||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=sulfate assimilation|0000103||IEA,cysteine biosynthetic process|0019344||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461869.1;locus_tag=C9F05_RS03420;product=NADPH-dependent assimilatory sulfite reductase flavoprotein subunit;protein_id=WP_023204597.1;transl_table=11
NZ_PYKE01000056.1	RefSeq	gene	6121	6483	.	+	.	ID=gene-C9F05_RS03430;Name=queD;gbkey=Gene;gene=queD;gene_biotype=protein_coding;locus_tag=C9F05_RS03430;old_locus_tag=C9F05_03490
NZ_PYKE01000056.1	Protein Homology	CDS	6121	6483	.	+	0	ID=cds-WP_000108313.1;Parent=gene-C9F05_RS03430;Dbxref=GenBank:WP_000108313.1;Name=WP_000108313.1;Ontology_term=GO:0008616,GO:0003824;gbkey=CDS;gene=queD;go_function=catalytic activity|0003824||IEA;go_process=tRNA queuosine(34) biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461870.1;locus_tag=C9F05_RS03430;product=6-carboxytetrahydropterin synthase QueD;protein_id=WP_000108313.1;transl_table=11
NZ_PYKE01000056.1	RefSeq	gene	6571	7368	.	-	.	ID=gene-C9F05_RS03435;Name=C9F05_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03435;old_locus_tag=C9F05_03495
NZ_PYKE01000056.1	Protein Homology	CDS	6571	7368	.	-	0	ID=cds-WP_135370031.1;Parent=gene-C9F05_RS03435;Dbxref=GenBank:WP_135370031.1;Name=WP_135370031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461871.1;locus_tag=C9F05_RS03435;product=MBL fold metallo-hydrolase;protein_id=WP_135370031.1;transl_table=11
NZ_PYKE01000056.1	RefSeq	direct_repeat	7527	9016	.	+	.	ID=id-NZ_PYKE01000056.1:7527..9016;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=7527..7555;rpt_unit_seq=cggtttatccccgctggcgcggggaacac
NZ_PYKE01000056.1	RefSeq	gene	9313	9984	.	-	.	ID=gene-C9F05_RS03440;Name=queE;gbkey=Gene;gene=queE;gene_biotype=protein_coding;locus_tag=C9F05_RS03440;old_locus_tag=C9F05_03500
NZ_PYKE01000056.1	Protein Homology	CDS	9313	9984	.	-	0	ID=cds-WP_001199961.1;Parent=gene-C9F05_RS03440;Dbxref=GenBank:WP_001199961.1;Name=WP_001199961.1;Ontology_term=GO:0006400,GO:0051539,GO:1904047;gbkey=CDS;gene=queE;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001199960.1;locus_tag=C9F05_RS03440;product=7-carboxy-7-deazaguanine synthase QueE;protein_id=WP_001199961.1;transl_table=11
NZ_PYKE01000056.1	RefSeq	gene	10120	11418	.	-	.	ID=gene-C9F05_RS03445;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=C9F05_RS03445;old_locus_tag=C9F05_03505
NZ_PYKE01000056.1	Protein Homology	CDS	10120	11418	.	-	0	ID=cds-WP_000036734.1;Parent=gene-C9F05_RS03445;Dbxref=GenBank:WP_000036734.1;Name=WP_000036734.1;Ontology_term=GO:0006096,GO:0000287,GO:0004634,GO:0000015;gbkey=CDS;gene=eno;go_component=phosphopyruvate hydratase complex|0000015||IEA;go_function=magnesium ion binding|0000287||IEA,phosphopyruvate hydratase activity|0004634||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456663.1;locus_tag=C9F05_RS03445;product=phosphopyruvate hydratase;protein_id=WP_000036734.1;transl_table=11
NZ_PYKE01000056.1	RefSeq	gene	11501	13138	.	-	.	ID=gene-C9F05_RS03450;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=C9F05_RS03450;old_locus_tag=C9F05_03510
NZ_PYKE01000056.1	Protein Homology	CDS	11501	13138	.	-	0	ID=cds-WP_000210863.1;Parent=gene-C9F05_RS03450;Dbxref=GenBank:WP_000210863.1;Name=WP_000210863.1;Ontology_term=GO:0006221,GO:0003883;gbkey=CDS;gene=pyrG;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130912.1;locus_tag=C9F05_RS03450;product=glutamine hydrolyzing CTP synthase;protein_id=WP_000210863.1;transl_table=11
NZ_PYKE01000056.1	RefSeq	gene	13366	14166	.	-	.	ID=gene-C9F05_RS03455;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=C9F05_RS03455;old_locus_tag=C9F05_03515
NZ_PYKE01000056.1	Protein Homology	CDS	13366	14166	.	-	0	ID=cds-WP_000210451.1;Parent=gene-C9F05_RS03455;Dbxref=GenBank:WP_000210451.1;Name=WP_000210451.1;gbkey=CDS;gene=mazG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461875.1;locus_tag=C9F05_RS03455;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_000210451.1;transl_table=11
##sequence-region NZ_PYKE01000246.1 1 13865
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000246.1	RefSeq	region	1	13865	.	+	.	ID=NZ_PYKE01000246.1:1..13865;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000246.1	RefSeq	gene	1	1553	.	+	.	ID=gene-C9F05_RS15760;Name=C9F05_RS15760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15760;old_locus_tag=C9F05_16200;partial=true;start_range=.,1
NZ_PYKE01000246.1	Protein Homology	CDS	1	1553	.	+	2	ID=cds-WP_135370450.1;Parent=gene-C9F05_RS15760;Dbxref=GenBank:WP_135370450.1;Name=WP_135370450.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416348.2;locus_tag=C9F05_RS15760;partial=true;product=MlaD family protein;protein_id=WP_135370450.1;start_range=.,1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	1631	3070	.	+	.	ID=gene-C9F05_RS15765;Name=rsmF;gbkey=Gene;gene=rsmF;gene_biotype=protein_coding;locus_tag=C9F05_RS15765;old_locus_tag=C9F05_16205
NZ_PYKE01000246.1	Protein Homology	CDS	1631	3070	.	+	0	ID=cds-WP_135370451.1;Parent=gene-C9F05_RS15765;Dbxref=GenBank:WP_135370451.1;Name=WP_135370451.1;Ontology_term=GO:0001510,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmF;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460806.1;locus_tag=C9F05_RS15765;product=16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF;protein_id=WP_135370451.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	3188	3424	.	+	.	ID=gene-C9F05_RS15770;Name=C9F05_RS15770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15770;old_locus_tag=C9F05_16210
NZ_PYKE01000246.1	Protein Homology	CDS	3188	3424	.	+	0	ID=cds-WP_024131108.1;Parent=gene-C9F05_RS15770;Dbxref=GenBank:WP_024131108.1;Name=WP_024131108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707284.2;locus_tag=C9F05_RS15770;product=YebV family protein;protein_id=WP_024131108.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	3535	3726	.	+	.	ID=gene-C9F05_RS15775;Name=C9F05_RS15775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15775;old_locus_tag=C9F05_16215
NZ_PYKE01000246.1	Protein Homology	CDS	3535	3726	.	+	0	ID=cds-WP_000457838.1;Parent=gene-C9F05_RS15775;Dbxref=GenBank:WP_000457838.1;Name=WP_000457838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460808.1;locus_tag=C9F05_RS15775;product=YebW family protein;protein_id=WP_000457838.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	3745	4395	.	-	.	ID=gene-C9F05_RS15780;Name=pphA;gbkey=Gene;gene=pphA;gene_biotype=protein_coding;locus_tag=C9F05_RS15780;old_locus_tag=C9F05_16220
NZ_PYKE01000246.1	Protein Homology	CDS	3745	4395	.	-	0	ID=cds-WP_135370452.1;Parent=gene-C9F05_RS15780;Dbxref=GenBank:WP_135370452.1;Name=WP_135370452.1;Ontology_term=GO:0016787;gbkey=CDS;gene=pphA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460809.1;locus_tag=C9F05_RS15780;product=protein-serine/threonine phosphatase;protein_id=WP_135370452.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	4413	4628	.	-	.	ID=gene-C9F05_RS24060;Name=C9F05_RS24060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24060
NZ_PYKE01000246.1	Protein Homology	CDS	4413	4628	.	-	0	ID=cds-WP_024132346.1;Parent=gene-C9F05_RS24060;Dbxref=GenBank:WP_024132346.1;Name=WP_024132346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001764306.1;locus_tag=C9F05_RS24060;product=hypothetical protein;protein_id=WP_024132346.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	4619	4783	.	-	.	ID=gene-C9F05_RS15785;Name=C9F05_RS15785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15785;old_locus_tag=C9F05_16225
NZ_PYKE01000246.1	Protein Homology	CDS	4619	4783	.	-	0	ID=cds-WP_001134853.1;Parent=gene-C9F05_RS15785;Dbxref=GenBank:WP_001134853.1;Name=WP_001134853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460810.1;locus_tag=C9F05_RS15785;product=hypothetical protein;protein_id=WP_001134853.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	5068	5790	.	-	.	ID=gene-C9F05_RS15790;Name=sopE2;gbkey=Gene;gene=sopE2;gene_biotype=protein_coding;locus_tag=C9F05_RS15790;old_locus_tag=C9F05_16230
NZ_PYKE01000246.1	Protein Homology	CDS	5068	5790	.	-	0	ID=cds-WP_023223000.1;Parent=gene-C9F05_RS15790;Dbxref=GenBank:WP_023223000.1;Name=WP_023223000.1;gbkey=CDS;gene=sopE2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460811.1;locus_tag=C9F05_RS15790;product=SPI-1 type III secretion system guanine nucleotide exchange factor SopE2;protein_id=WP_023223000.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	6475	6870	.	+	.	ID=gene-C9F05_RS15795;Name=C9F05_RS15795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15795;old_locus_tag=C9F05_16235
NZ_PYKE01000246.1	Protein Homology	CDS	6475	6870	.	+	0	ID=cds-WP_000422887.1;Parent=gene-C9F05_RS15795;Dbxref=GenBank:WP_000422887.1;Name=WP_000422887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460812.1;locus_tag=C9F05_RS15795;product=DUF1398 domain-containing protein;protein_id=WP_000422887.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	7198	7674	.	+	.	ID=gene-C9F05_RS15800;Name=C9F05_RS15800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15800;old_locus_tag=C9F05_16240
NZ_PYKE01000246.1	Protein Homology	CDS	7198	7674	.	+	0	ID=cds-WP_135370453.1;Parent=gene-C9F05_RS15800;Dbxref=GenBank:WP_135370453.1;Name=WP_135370453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000030934.1;locus_tag=C9F05_RS15800;product=hypothetical protein;protein_id=WP_135370453.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	8062	8481	.	-	.	ID=gene-C9F05_RS15805;Name=C9F05_RS15805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15805;old_locus_tag=C9F05_16245
NZ_PYKE01000246.1	Protein Homology	CDS	8062	8481	.	-	0	ID=cds-WP_000354404.1;Parent=gene-C9F05_RS15805;Dbxref=GenBank:WP_000354404.1;Name=WP_000354404.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460813.1;locus_tag=C9F05_RS15805;product=GNAT family N-acetyltransferase;protein_id=WP_000354404.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	8850	9119	.	+	.	ID=gene-C9F05_RS15815;Name=C9F05_RS15815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15815;old_locus_tag=C9F05_16255
NZ_PYKE01000246.1	Protein Homology	CDS	8850	9119	.	+	0	ID=cds-WP_077248370.1;Parent=gene-C9F05_RS15815;Dbxref=GenBank:WP_077248370.1;Name=WP_077248370.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460814.1;locus_tag=C9F05_RS15815;product=hypothetical protein;protein_id=WP_077248370.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	9285	9425	.	+	.	ID=gene-C9F05_RS15820;Name=C9F05_RS15820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15820;old_locus_tag=C9F05_16260
NZ_PYKE01000246.1	Protein Homology	CDS	9285	9425	.	+	0	ID=cds-WP_001576018.1;Parent=gene-C9F05_RS15820;Dbxref=GenBank:WP_001576018.1;Name=WP_001576018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001576018.1;locus_tag=C9F05_RS15820;product=hypothetical protein;protein_id=WP_001576018.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	pseudogene	9568	10100	.	-	.	ID=gene-C9F05_RS15825;Name=C9F05_RS15825;end_range=10100,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS15825;old_locus_tag=C9F05_16265;partial=true;pseudo=true
NZ_PYKE01000246.1	Protein Homology	CDS	9568	10100	.	-	0	ID=cds-C9F05_RS15825;Parent=gene-C9F05_RS15825;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=10100,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=C9F05_RS15825;partial=true;product=IS256 family transposase;pseudo=true;transl_table=11
NZ_PYKE01000246.1	RefSeq	pseudogene	10110	10208	.	-	.	ID=gene-C9F05_RS24185;Name=C9F05_RS24185;end_range=10208,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24185;old_locus_tag=C9F05_16270;partial=true;pseudo=true;start_range=.,10110
NZ_PYKE01000246.1	Protein Homology	CDS	10110	10208	.	-	0	ID=cds-C9F05_RS24185;Parent=gene-C9F05_RS24185;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=10208,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460948.1;locus_tag=C9F05_RS24185;partial=true;product=DUF4113 domain-containing protein;pseudo=true;start_range=.,10110;transl_table=11
NZ_PYKE01000246.1	RefSeq	gene	10242	12542	.	-	.	ID=gene-C9F05_RS15835;Name=C9F05_RS15835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15835;old_locus_tag=C9F05_16275
NZ_PYKE01000246.1	Protein Homology	CDS	10242	12542	.	-	0	ID=cds-WP_135370454.1;Parent=gene-C9F05_RS15835;Dbxref=GenBank:WP_135370454.1;Name=WP_135370454.1;Ontology_term=GO:0016567,GO:0004842;gbkey=CDS;go_function=ubiquitin-protein transferase activity|0004842||IEA;go_process=protein ubiquitination|0016567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_052938253.1;locus_tag=C9F05_RS15835;product=NEL-type E3 ubiquitin ligase domain-containing protein;protein_id=WP_135370454.1;transl_table=11
NZ_PYKE01000246.1	RefSeq	pseudogene	12803	13156	.	+	.	ID=gene-C9F05_RS15845;Name=C9F05_RS15845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS15845;old_locus_tag=C9F05_16285;partial=true;pseudo=true;start_range=.,12803
NZ_PYKE01000246.1	Protein Homology	CDS	12803	13156	.	+	0	ID=cds-C9F05_RS15845;Parent=gene-C9F05_RS15845;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017466154.1;locus_tag=C9F05_RS15845;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,12803;transl_table=11
##sequence-region NZ_PYKE01000093.1 1 50946
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000093.1	RefSeq	region	1	50946	.	+	.	ID=NZ_PYKE01000093.1:1..50946;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000093.1	RefSeq	gene	23	1612	.	+	.	ID=gene-C9F05_RS06580;Name=C9F05_RS06580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06580;old_locus_tag=C9F05_06715
NZ_PYKE01000093.1	Protein Homology	CDS	23	1612	.	+	0	ID=cds-WP_135370128.1;Parent=gene-C9F05_RS06580;Dbxref=GenBank:WP_135370128.1;Name=WP_135370128.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462505.1;locus_tag=C9F05_RS06580;product=STY4199 family HEPN domain-containing protein;protein_id=WP_135370128.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	1625	3274	.	-	.	ID=gene-C9F05_RS06585;Name=C9F05_RS06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06585;old_locus_tag=C9F05_06720
NZ_PYKE01000093.1	Protein Homology	CDS	1625	3274	.	-	0	ID=cds-WP_000934254.1;Parent=gene-C9F05_RS06585;Dbxref=GenBank:WP_000934254.1;Name=WP_000934254.1;Ontology_term=GO:0005993,GO:0004555;gbkey=CDS;go_function=alpha%2Calpha-trehalase activity|0004555||IEA;go_process=trehalose catabolic process|0005993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462504.1;locus_tag=C9F05_RS06585;product=alpha%2Calpha-trehalase;protein_id=WP_000934254.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	3600	4319	.	+	.	ID=gene-C9F05_RS06590;Name=C9F05_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06590;old_locus_tag=C9F05_06725
NZ_PYKE01000093.1	Protein Homology	CDS	3600	4319	.	+	0	ID=cds-WP_000572565.1;Parent=gene-C9F05_RS06590;Dbxref=GenBank:WP_000572565.1;Name=WP_000572565.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462503.1;locus_tag=C9F05_RS06590;product=GntR family transcriptional regulator;protein_id=WP_000572565.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	4495	5472	.	+	.	ID=gene-C9F05_RS06595;Name=fraB;gbkey=Gene;gene=fraB;gene_biotype=protein_coding;locus_tag=C9F05_RS06595;old_locus_tag=C9F05_06730
NZ_PYKE01000093.1	Protein Homology	CDS	4495	5472	.	+	0	ID=cds-WP_135370129.1;Parent=gene-C9F05_RS06595;Dbxref=GenBank:WP_135370129.1;Name=WP_135370129.1;gbkey=CDS;gene=fraB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462502.1;locus_tag=C9F05_RS06595;product=6-phosphofructose-aspartate deglycase;protein_id=WP_135370129.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	5536	6381	.	+	.	ID=gene-C9F05_RS06600;Name=fraD;gbkey=Gene;gene=fraD;gene_biotype=protein_coding;locus_tag=C9F05_RS06600;old_locus_tag=C9F05_06735
NZ_PYKE01000093.1	Protein Homology	CDS	5536	6381	.	+	0	ID=cds-WP_023227415.1;Parent=gene-C9F05_RS06600;Dbxref=GenBank:WP_023227415.1;Name=WP_023227415.1;gbkey=CDS;gene=fraD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462501.1;locus_tag=C9F05_RS06600;product=fructose-aspartate kinase;protein_id=WP_023227415.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	6435	7754	.	+	.	ID=gene-C9F05_RS06605;Name=C9F05_RS06605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06605;old_locus_tag=C9F05_06740
NZ_PYKE01000093.1	Protein Homology	CDS	6435	7754	.	+	0	ID=cds-WP_000498935.1;Parent=gene-C9F05_RS06605;Dbxref=GenBank:WP_000498935.1;Name=WP_000498935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462500.1;locus_tag=C9F05_RS06605;product=anaerobic C4-dicarboxylate transporter family protein;protein_id=WP_000498935.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	7813	8856	.	+	.	ID=gene-C9F05_RS06610;Name=fraE;gbkey=Gene;gene=fraE;gene_biotype=protein_coding;locus_tag=C9F05_RS06610;old_locus_tag=C9F05_06745
NZ_PYKE01000093.1	Protein Homology	CDS	7813	8856	.	+	0	ID=cds-WP_000702755.1;Parent=gene-C9F05_RS06610;Dbxref=GenBank:WP_000702755.1;Name=WP_000702755.1;gbkey=CDS;gene=fraE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462499.1;locus_tag=C9F05_RS06610;product=fructose-asparagine asparaginase;protein_id=WP_000702755.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	8903	10255	.	-	.	ID=gene-C9F05_RS06615;Name=gorA;gbkey=Gene;gene=gorA;gene_biotype=protein_coding;locus_tag=C9F05_RS06615;old_locus_tag=C9F05_06750
NZ_PYKE01000093.1	Protein Homology	CDS	8903	10255	.	-	0	ID=cds-WP_000160778.1;Parent=gene-C9F05_RS06615;Dbxref=GenBank:WP_000160778.1;Name=WP_000160778.1;Ontology_term=GO:0006749,GO:0045454,GO:0004362,GO:0050660,GO:0050661;gbkey=CDS;gene=gorA;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;go_process=glutathione metabolic process|0006749||IEA,cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003861215.1;locus_tag=C9F05_RS06615;product=glutathione-disulfide reductase;protein_id=WP_000160778.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	10360	11202	.	-	.	ID=gene-C9F05_RS06620;Name=C9F05_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06620;old_locus_tag=C9F05_06755
NZ_PYKE01000093.1	Protein Homology	CDS	10360	11202	.	-	0	ID=cds-WP_000954235.1;Parent=gene-C9F05_RS06620;Dbxref=GenBank:WP_000954235.1;Name=WP_000954235.1;Ontology_term=GO:0015976,GO:0070475,GO:0003723,GO:0008988,GO:1904047;gbkey=CDS;go_function=RNA binding|0003723||IEA,rRNA (adenine-N6-)-methyltransferase activity|0008988||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=carbon utilization|0015976||IEA,rRNA base methylation|0070475||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462497.1;locus_tag=C9F05_RS06620;product=23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ;protein_id=WP_000954235.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	11323	11766	.	-	.	ID=gene-C9F05_RS06625;Name=C9F05_RS06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06625;old_locus_tag=C9F05_06760
NZ_PYKE01000093.1	Protein Homology	CDS	11323	11766	.	-	0	ID=cds-WP_167851643.1;Parent=gene-C9F05_RS06625;Dbxref=GenBank:WP_167851643.1;Name=WP_167851643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000209569.1;locus_tag=C9F05_RS06625;product=hypothetical protein;protein_id=WP_167851643.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	12044	12697	.	+	.	ID=gene-C9F05_RS06630;Name=C9F05_RS06630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06630;old_locus_tag=C9F05_06765
NZ_PYKE01000093.1	Protein Homology	CDS	12044	12697	.	+	0	ID=cds-WP_000469190.1;Parent=gene-C9F05_RS06630;Dbxref=GenBank:WP_000469190.1;Name=WP_000469190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000469196.1;locus_tag=C9F05_RS06630;product=hypothetical protein;protein_id=WP_000469190.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	12860	14902	.	+	.	ID=gene-C9F05_RS06635;Name=prlC;gbkey=Gene;gene=prlC;gene_biotype=protein_coding;locus_tag=C9F05_RS06635;old_locus_tag=C9F05_06770
NZ_PYKE01000093.1	Protein Homology	CDS	12860	14902	.	+	0	ID=cds-WP_000184178.1;Parent=gene-C9F05_RS06635;Dbxref=GenBank:WP_000184178.1;Name=WP_000184178.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=prlC;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020317218.1;locus_tag=C9F05_RS06635;product=oligopeptidase A;protein_id=WP_000184178.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	14909	15667	.	+	.	ID=gene-C9F05_RS06640;Name=rsmJ;gbkey=Gene;gene=rsmJ;gene_biotype=protein_coding;locus_tag=C9F05_RS06640;old_locus_tag=C9F05_06775
NZ_PYKE01000093.1	Protein Homology	CDS	14909	15667	.	+	0	ID=cds-WP_001165127.1;Parent=gene-C9F05_RS06640;Dbxref=GenBank:WP_001165127.1;Name=WP_001165127.1;Ontology_term=GO:0031167,GO:0008990;gbkey=CDS;gene=rsmJ;go_function=rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462494.1;locus_tag=C9F05_RS06640;product=16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ;protein_id=WP_001165127.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	15759	17231	.	-	.	ID=gene-C9F05_RS06645;Name=dtpB;gbkey=Gene;gene=dtpB;gene_biotype=protein_coding;locus_tag=C9F05_RS06645;old_locus_tag=C9F05_06780
NZ_PYKE01000093.1	Protein Homology	CDS	15759	17231	.	-	0	ID=cds-WP_001098280.1;Parent=gene-C9F05_RS06645;Dbxref=GenBank:WP_001098280.1;Name=WP_001098280.1;gbkey=CDS;gene=dtpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462493.1;locus_tag=C9F05_RS06645;product=dipeptide/tripeptide permease DtpB;protein_id=WP_001098280.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	17556	17990	.	-	.	ID=gene-C9F05_RS06650;Name=uspA;gbkey=Gene;gene=uspA;gene_biotype=protein_coding;locus_tag=C9F05_RS06650;old_locus_tag=C9F05_06785
NZ_PYKE01000093.1	Protein Homology	CDS	17556	17990	.	-	0	ID=cds-WP_000323565.1;Parent=gene-C9F05_RS06650;Dbxref=GenBank:WP_000323565.1;Name=WP_000323565.1;gbkey=CDS;gene=uspA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462492.1;locus_tag=C9F05_RS06650;product=universal stress protein UspA;protein_id=WP_000323565.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	18378	18713	.	+	.	ID=gene-C9F05_RS06655;Name=uspB;gbkey=Gene;gene=uspB;gene_biotype=protein_coding;locus_tag=C9F05_RS06655;old_locus_tag=C9F05_06790
NZ_PYKE01000093.1	Protein Homology	CDS	18378	18713	.	+	0	ID=cds-WP_000626193.1;Parent=gene-C9F05_RS06655;Dbxref=GenBank:WP_000626193.1;Name=WP_000626193.1;gbkey=CDS;gene=uspB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462491.1;locus_tag=C9F05_RS06655;product=universal stress protein UspB;protein_id=WP_000626193.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	18854	20350	.	-	.	ID=gene-C9F05_RS06660;Name=pitA;gbkey=Gene;gene=pitA;gene_biotype=protein_coding;locus_tag=C9F05_RS06660;old_locus_tag=C9F05_06795
NZ_PYKE01000093.1	Protein Homology	CDS	18854	20350	.	-	0	ID=cds-WP_000902764.1;Parent=gene-C9F05_RS06660;Dbxref=GenBank:WP_000902764.1;Name=WP_000902764.1;Ontology_term=GO:0006817,GO:0016020;gbkey=CDS;gene=pitA;go_component=membrane|0016020||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462490.1;locus_tag=C9F05_RS06660;product=inorganic phosphate transporter PitA;protein_id=WP_000902764.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	20581	21777	.	+	.	ID=gene-C9F05_RS06665;Name=C9F05_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06665;old_locus_tag=C9F05_06800
NZ_PYKE01000093.1	Protein Homology	CDS	20581	21777	.	+	0	ID=cds-WP_000439230.1;Parent=gene-C9F05_RS06665;Dbxref=GenBank:WP_000439230.1;Name=WP_000439230.1;Ontology_term=GO:0050660,GO:0050661;gbkey=CDS;go_function=flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462489.1;locus_tag=C9F05_RS06665;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_000439230.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	22083	23150	.	+	.	ID=gene-C9F05_RS06670;Name=C9F05_RS06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06670;old_locus_tag=C9F05_06805
NZ_PYKE01000093.1	Protein Homology	CDS	22083	23150	.	+	0	ID=cds-WP_000359836.1;Parent=gene-C9F05_RS06670;Dbxref=GenBank:WP_000359836.1;Name=WP_000359836.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462488.1;locus_tag=C9F05_RS06670;product=HlyD family secretion protein;protein_id=WP_000359836.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	23147	25888	.	+	.	ID=gene-C9F05_RS06675;Name=rbbA;gbkey=Gene;gene=rbbA;gene_biotype=protein_coding;locus_tag=C9F05_RS06675;old_locus_tag=C9F05_06810
NZ_PYKE01000093.1	Protein Homology	CDS	23147	25888	.	+	0	ID=cds-WP_000202924.1;Parent=gene-C9F05_RS06675;Dbxref=GenBank:WP_000202924.1;Name=WP_000202924.1;Ontology_term=GO:0055085,GO:0005524,GO:0042626,GO:0016020,GO:0043190;gbkey=CDS;gene=rbbA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709254.1;locus_tag=C9F05_RS06675;product=ribosome-associated ATPase/putative transporter RbbA;protein_id=WP_000202924.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	25888	27012	.	+	.	ID=gene-C9F05_RS06680;Name=C9F05_RS06680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06680;old_locus_tag=C9F05_06815
NZ_PYKE01000093.1	Protein Homology	CDS	25888	27012	.	+	0	ID=cds-WP_001214753.1;Parent=gene-C9F05_RS06680;Dbxref=GenBank:WP_001214753.1;Name=WP_001214753.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462486.1;locus_tag=C9F05_RS06680;product=ABC transporter permease;protein_id=WP_001214753.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	27114	27515	.	-	.	ID=gene-C9F05_RS06685;Name=nikR;gbkey=Gene;gene=nikR;gene_biotype=protein_coding;locus_tag=C9F05_RS06685;old_locus_tag=C9F05_06820
NZ_PYKE01000093.1	Protein Homology	CDS	27114	27515	.	-	0	ID=cds-WP_001190057.1;Parent=gene-C9F05_RS06685;Dbxref=GenBank:WP_001190057.1;Name=WP_001190057.1;Ontology_term=GO:0006355,GO:0010045,GO:0003677,GO:0016151;gbkey=CDS;gene=nikR;go_function=DNA binding|0003677||IEA,nickel cation binding|0016151||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to nickel cation|0010045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462485.1;locus_tag=C9F05_RS06685;product=nickel-responsive transcriptional regulator NikR;protein_id=WP_001190057.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	27607	28185	.	-	.	ID=gene-C9F05_RS06690;Name=acpT;gbkey=Gene;gene=acpT;gene_biotype=protein_coding;locus_tag=C9F05_RS06690;old_locus_tag=C9F05_06825
NZ_PYKE01000093.1	Protein Homology	CDS	27607	28185	.	-	0	ID=cds-WP_000284371.1;Parent=gene-C9F05_RS06690;Dbxref=GenBank:WP_000284371.1;Name=WP_000284371.1;gbkey=CDS;gene=acpT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462484.1;locus_tag=C9F05_RS06690;product=4'-phosphopantetheinyl transferase AcpT;protein_id=WP_000284371.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	28237	29286	.	-	.	ID=gene-C9F05_RS06695;Name=C9F05_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06695;old_locus_tag=C9F05_06830
NZ_PYKE01000093.1	Protein Homology	CDS	28237	29286	.	-	0	ID=cds-WP_000179588.1;Parent=gene-C9F05_RS06695;Dbxref=GenBank:WP_000179588.1;Name=WP_000179588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462483.1;locus_tag=C9F05_RS06695;product=AI-2E family transporter;protein_id=WP_000179588.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	29376	30635	.	+	.	ID=gene-C9F05_RS06700;Name=C9F05_RS06700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06700;old_locus_tag=C9F05_06835
NZ_PYKE01000093.1	Protein Homology	CDS	29376	30635	.	+	0	ID=cds-WP_077906124.1;Parent=gene-C9F05_RS06700;Dbxref=GenBank:WP_077906124.1;Name=WP_077906124.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462482.3;locus_tag=C9F05_RS06700;product=MFS transporter;protein_id=WP_077906124.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	30639	31196	.	-	.	ID=gene-C9F05_RS06705;Name=C9F05_RS06705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06705;old_locus_tag=C9F05_06840
NZ_PYKE01000093.1	Protein Homology	CDS	30639	31196	.	-	0	ID=cds-WP_045902045.1;Parent=gene-C9F05_RS06705;Dbxref=GenBank:WP_045902045.1;Name=WP_045902045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462481.1;locus_tag=C9F05_RS06705;product=DcrB family lipoprotein;protein_id=WP_045902045.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	31269	31934	.	-	.	ID=gene-C9F05_RS06710;Name=C9F05_RS06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06710;old_locus_tag=C9F05_06845
NZ_PYKE01000093.1	Protein Homology	CDS	31269	31934	.	-	0	ID=cds-WP_045902118.1;Parent=gene-C9F05_RS06710;Dbxref=GenBank:WP_045902118.1;Name=WP_045902118.1;Ontology_term=GO:0160254;gbkey=CDS;go_process=tRNA queuosine(34) biosynthetic process from salvaged queuosine or its precursors|0160254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462480.1;locus_tag=C9F05_RS06710;product=7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter;protein_id=WP_045902118.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	32104	32349	.	+	.	ID=gene-C9F05_RS06715;Name=tusA;gbkey=Gene;gene=tusA;gene_biotype=protein_coding;locus_tag=C9F05_RS06715;old_locus_tag=C9F05_06850
NZ_PYKE01000093.1	Protein Homology	CDS	32104	32349	.	+	0	ID=cds-WP_001541054.1;Parent=gene-C9F05_RS06715;Dbxref=GenBank:WP_001541054.1;Name=WP_001541054.1;Ontology_term=GO:0002143,GO:0097163;gbkey=CDS;gene=tusA;go_function=sulfur carrier activity|0097163||IEA;go_process=tRNA wobble position uridine thiolation|0002143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462479.1;locus_tag=C9F05_RS06715;product=sulfurtransferase TusA;protein_id=WP_001541054.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	32373	34016	.	-	.	ID=gene-C9F05_RS06720;Name=tcp;gbkey=Gene;gene=tcp;gene_biotype=protein_coding;locus_tag=C9F05_RS06720;old_locus_tag=C9F05_06855
NZ_PYKE01000093.1	Protein Homology	CDS	32373	34016	.	-	0	ID=cds-WP_000789678.1;Parent=gene-C9F05_RS06720;Dbxref=GenBank:WP_000789678.1;Name=WP_000789678.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888;gbkey=CDS;gene=tcp;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462478.1;locus_tag=C9F05_RS06720;product=methyl-accepting chemotaxis citrate transducer;protein_id=WP_000789678.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	34216	36414	.	-	.	ID=gene-C9F05_RS06725;Name=zntA;gbkey=Gene;gene=zntA;gene_biotype=protein_coding;locus_tag=C9F05_RS06725;old_locus_tag=C9F05_06860
NZ_PYKE01000093.1	Protein Homology	CDS	34216	36414	.	-	0	ID=cds-WP_135370130.1;Parent=gene-C9F05_RS06725;Dbxref=GenBank:WP_135370130.1;Name=WP_135370130.1;Ontology_term=GO:0006812,GO:0005215,GO:0005524,GO:0016887,GO:0019829,GO:0046872,GO:0016020;gbkey=CDS;gene=zntA;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA,metal ion binding|0046872||IEA;go_process=monoatomic cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462477.1;locus_tag=C9F05_RS06725;product=Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA;protein_id=WP_135370130.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	36495	37121	.	-	.	ID=gene-C9F05_RS06730;Name=C9F05_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06730;old_locus_tag=C9F05_06865
NZ_PYKE01000093.1	Protein Homology	CDS	36495	37121	.	-	0	ID=cds-WP_000964735.1;Parent=gene-C9F05_RS06730;Dbxref=GenBank:WP_000964735.1;Name=WP_000964735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462476.1;locus_tag=C9F05_RS06730;product=lysoplasmalogenase;protein_id=WP_000964735.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	37263	37634	.	+	.	ID=gene-C9F05_RS06735;Name=C9F05_RS06735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06735;old_locus_tag=C9F05_06870
NZ_PYKE01000093.1	Protein Homology	CDS	37263	37634	.	+	0	ID=cds-WP_000042855.1;Parent=gene-C9F05_RS06735;Dbxref=GenBank:WP_000042855.1;Name=WP_000042855.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462475.1;locus_tag=C9F05_RS06735;product=DUF2500 domain-containing protein;protein_id=WP_000042855.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	37656	37925	.	-	.	ID=gene-C9F05_RS06740;Name=C9F05_RS06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06740;old_locus_tag=C9F05_06875
NZ_PYKE01000093.1	Protein Homology	CDS	37656	37925	.	-	0	ID=cds-WP_000906757.1;Parent=gene-C9F05_RS06740;Dbxref=GenBank:WP_000906757.1;Name=WP_000906757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312342.1;locus_tag=C9F05_RS06740;product=DUF1145 family protein;protein_id=WP_000906757.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	37915	38511	.	-	.	ID=gene-C9F05_RS06745;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=C9F05_RS06745;old_locus_tag=C9F05_06880
NZ_PYKE01000093.1	Protein Homology	CDS	37915	38511	.	-	0	ID=cds-WP_000743275.1;Parent=gene-C9F05_RS06745;Dbxref=GenBank:WP_000743275.1;Name=WP_000743275.1;Ontology_term=GO:0031167,GO:0003676,GO:0008168;gbkey=CDS;gene=rsmD;go_function=nucleic acid binding|0003676||IEA,methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462473.1;locus_tag=C9F05_RS06745;product=16S rRNA (guanine(966)-N(2))-methyltransferase;protein_id=WP_000743275.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	38637	40112	.	+	.	ID=gene-C9F05_RS06750;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=C9F05_RS06750;old_locus_tag=C9F05_06885
NZ_PYKE01000093.1	Protein Homology	CDS	38637	40112	.	+	0	ID=cds-WP_135370131.1;Parent=gene-C9F05_RS06750;Dbxref=GenBank:WP_135370131.1;Name=WP_135370131.1;Ontology_term=GO:0006614,GO:0009306,GO:0003924,GO:0005047;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=SRP-dependent cotranslational protein targeting to membrane|0006614||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462472.1;locus_tag=C9F05_RS06750;product=signal recognition particle-docking protein FtsY;protein_id=WP_135370131.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	40115	40783	.	+	.	ID=gene-C9F05_RS06755;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=C9F05_RS06755;old_locus_tag=C9F05_06890
NZ_PYKE01000093.1	Protein Homology	CDS	40115	40783	.	+	0	ID=cds-WP_000617729.1;Parent=gene-C9F05_RS06755;Dbxref=GenBank:WP_000617729.1;Name=WP_000617729.1;Ontology_term=GO:0000910,GO:0005524;gbkey=CDS;gene=ftsE;go_function=ATP binding|0005524||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462471.1;locus_tag=C9F05_RS06755;product=cell division ATP-binding protein FtsE;protein_id=WP_000617729.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	40776	41831	.	+	.	ID=gene-C9F05_RS06760;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=C9F05_RS06760;old_locus_tag=C9F05_06895
NZ_PYKE01000093.1	Protein Homology	CDS	40776	41831	.	+	0	ID=cds-WP_001081707.1;Parent=gene-C9F05_RS06760;Dbxref=GenBank:WP_001081707.1;Name=WP_001081707.1;Ontology_term=GO:0000910;gbkey=CDS;gene=ftsX;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462470.1;locus_tag=C9F05_RS06760;product=permease-like cell division protein FtsX;protein_id=WP_001081707.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	42077	42931	.	+	.	ID=gene-C9F05_RS06765;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=C9F05_RS06765;old_locus_tag=C9F05_06900
NZ_PYKE01000093.1	Protein Homology	CDS	42077	42931	.	+	0	ID=cds-WP_000159621.1;Parent=gene-C9F05_RS06765;Dbxref=GenBank:WP_000159621.1;Name=WP_000159621.1;Ontology_term=GO:0006352,GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoH;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462469.1;locus_tag=C9F05_RS06765;product=RNA polymerase sigma factor RpoH;protein_id=WP_000159621.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	43253	44356	.	+	.	ID=gene-C9F05_RS06770;Name=livJ;gbkey=Gene;gene=livJ;gene_biotype=protein_coding;locus_tag=C9F05_RS06770;old_locus_tag=C9F05_06905
NZ_PYKE01000093.1	Protein Homology	CDS	43253	44356	.	+	0	ID=cds-WP_001528146.1;Parent=gene-C9F05_RS06770;Dbxref=GenBank:WP_001528146.1;Name=WP_001528146.1;gbkey=CDS;gene=livJ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026223.1;locus_tag=C9F05_RS06770;product=branched chain amino acid ABC transporter substrate-binding protein LivJ;protein_id=WP_001528146.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	44439	44573	.	-	.	ID=gene-C9F05_RS06775;Name=C9F05_RS06775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06775;old_locus_tag=C9F05_06910
NZ_PYKE01000093.1	Protein Homology	CDS	44439	44573	.	-	0	ID=cds-WP_001517957.1;Parent=gene-C9F05_RS06775;Dbxref=GenBank:WP_001517957.1;Name=WP_001517957.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462467.1;locus_tag=C9F05_RS06775;product=hypothetical protein;protein_id=WP_001517957.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	44551	44934	.	-	.	ID=gene-C9F05_RS06780;Name=panM;gbkey=Gene;gene=panM;gene_biotype=protein_coding;locus_tag=C9F05_RS06780;old_locus_tag=C9F05_06915
NZ_PYKE01000093.1	Protein Homology	CDS	44551	44934	.	-	0	ID=cds-WP_000778873.1;Parent=gene-C9F05_RS06780;Dbxref=GenBank:WP_000778873.1;Name=WP_000778873.1;Ontology_term=GO:0015940,GO:0031638,GO:0008080;gbkey=CDS;gene=panM;go_function=N-acetyltransferase activity|0008080||IEA;go_process=pantothenate biosynthetic process|0015940||IEA,zymogen activation|0031638||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462466.1;locus_tag=C9F05_RS06780;product=aspartate 1-decarboxylase autocleavage activator PanM;protein_id=WP_000778873.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	45356	46465	.	+	.	ID=gene-C9F05_RS06785;Name=livK;gbkey=Gene;gene=livK;gene_biotype=protein_coding;locus_tag=C9F05_RS06785;old_locus_tag=C9F05_06920
NZ_PYKE01000093.1	Protein Homology	CDS	45356	46465	.	+	0	ID=cds-WP_000822976.1;Parent=gene-C9F05_RS06785;Dbxref=GenBank:WP_000822976.1;Name=WP_000822976.1;gbkey=CDS;gene=livK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462465.1;locus_tag=C9F05_RS06785;product=high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK;protein_id=WP_000822976.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	46525	47451	.	+	.	ID=gene-C9F05_RS06790;Name=livH;gbkey=Gene;gene=livH;gene_biotype=protein_coding;locus_tag=C9F05_RS06790;old_locus_tag=C9F05_06925
NZ_PYKE01000093.1	Protein Homology	CDS	46525	47451	.	+	0	ID=cds-WP_000003007.1;Parent=gene-C9F05_RS06790;Dbxref=GenBank:WP_000003007.1;Name=WP_000003007.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=livH;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010436488.1;locus_tag=C9F05_RS06790;product=high-affinity branched-chain amino acid ABC transporter permease LivH;protein_id=WP_000003007.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	47448	48725	.	+	.	ID=gene-C9F05_RS06795;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=C9F05_RS06795;old_locus_tag=C9F05_06930
NZ_PYKE01000093.1	Protein Homology	CDS	47448	48725	.	+	0	ID=cds-WP_135370132.1;Parent=gene-C9F05_RS06795;Dbxref=GenBank:WP_135370132.1;Name=WP_135370132.1;gbkey=CDS;gene=livM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462463.1;locus_tag=C9F05_RS06795;product=branched chain amino acid ABC transporter permease LivM;protein_id=WP_135370132.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	48722	49489	.	+	.	ID=gene-C9F05_RS06800;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=C9F05_RS06800;old_locus_tag=C9F05_06935
NZ_PYKE01000093.1	Protein Homology	CDS	48722	49489	.	+	0	ID=cds-WP_000082080.1;Parent=gene-C9F05_RS06800;Dbxref=GenBank:WP_000082080.1;Name=WP_000082080.1;gbkey=CDS;gene=livG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000084170.1;locus_tag=C9F05_RS06800;product=high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG;protein_id=WP_000082080.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	49491	50204	.	+	.	ID=gene-C9F05_RS06805;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=C9F05_RS06805;old_locus_tag=C9F05_06940
NZ_PYKE01000093.1	Protein Homology	CDS	49491	50204	.	+	0	ID=cds-WP_000416114.1;Parent=gene-C9F05_RS06805;Dbxref=GenBank:WP_000416114.1;Name=WP_000416114.1;gbkey=CDS;gene=livF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462461.1;locus_tag=C9F05_RS06805;product=high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;protein_id=WP_000416114.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	50259	50480	.	+	.	ID=gene-C9F05_RS06810;Name=C9F05_RS06810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06810;old_locus_tag=C9F05_06945
NZ_PYKE01000093.1	Protein Homology	CDS	50259	50480	.	+	0	ID=cds-WP_165901231.1;Parent=gene-C9F05_RS06810;Dbxref=GenBank:WP_165901231.1;Name=WP_165901231.1;Ontology_term=GO:0006355,GO:0045927,GO:0003677,GO:0097351,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=DNA binding|0003677||IEA,toxin sequestering activity|0097351||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,positive regulation of growth|0045927||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229268.1;locus_tag=C9F05_RS06810;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_165901231.1;transl_table=11
NZ_PYKE01000093.1	RefSeq	gene	50477	50845	.	+	.	ID=gene-C9F05_RS06815;Name=C9F05_RS06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06815;old_locus_tag=C9F05_06950
NZ_PYKE01000093.1	Protein Homology	CDS	50477	50845	.	+	0	ID=cds-WP_000174966.1;Parent=gene-C9F05_RS06815;Dbxref=GenBank:WP_000174966.1;Name=WP_000174966.1;Ontology_term=GO:0016301,GO:0090729,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=kinase activity|0016301||IEA,toxin activity|0090729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462459.1;locus_tag=C9F05_RS06815;product=type II toxin-antitoxin system death-on-curing family toxin;protein_id=WP_000174966.1;transl_table=11
##sequence-region NZ_PYKE01000111.1 1 13768
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000111.1	RefSeq	region	1	13768	.	+	.	ID=NZ_PYKE01000111.1:1..13768;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000111.1	RefSeq	gene	105	1436	.	+	.	ID=gene-C9F05_RS08255;Name=cadB;gbkey=Gene;gene=cadB;gene_biotype=protein_coding;locus_tag=C9F05_RS08255;old_locus_tag=C9F05_08450
NZ_PYKE01000111.1	Protein Homology	CDS	105	1436	.	+	0	ID=cds-WP_000100008.1;Parent=gene-C9F05_RS08255;Dbxref=GenBank:WP_000100008.1;Name=WP_000100008.1;Ontology_term=GO:0043872;gbkey=CDS;gene=cadB;go_function=lysine:cadaverine antiporter activity|0043872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461493.1;locus_tag=C9F05_RS08255;product=cadaverine/lysine antiporter;protein_id=WP_000100008.1;transl_table=11
NZ_PYKE01000111.1	RefSeq	gene	1519	3663	.	+	.	ID=gene-C9F05_RS08260;Name=cadA;gbkey=Gene;gene=cadA;gene_biotype=protein_coding;locus_tag=C9F05_RS08260;old_locus_tag=C9F05_08455
NZ_PYKE01000111.1	Protein Homology	CDS	1519	3663	.	+	0	ID=cds-WP_001100652.1;Parent=gene-C9F05_RS08260;Dbxref=GenBank:WP_001100652.1;Name=WP_001100652.1;gbkey=CDS;gene=cadA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461494.1;locus_tag=C9F05_RS08260;product=lysine decarboxylase CadA;protein_id=WP_001100652.1;transl_table=11
NZ_PYKE01000111.1	RefSeq	gene	3719	5179	.	+	.	ID=gene-C9F05_RS08265;Name=dtpD;gbkey=Gene;gene=dtpD;gene_biotype=protein_coding;locus_tag=C9F05_RS08265;old_locus_tag=C9F05_08460
NZ_PYKE01000111.1	Protein Homology	CDS	3719	5179	.	+	0	ID=cds-WP_000856793.1;Parent=gene-C9F05_RS08265;Dbxref=GenBank:WP_000856793.1;Name=WP_000856793.1;Ontology_term=GO:0006857,GO:0055085,GO:1904680,GO:0016020;gbkey=CDS;gene=dtpD;go_component=membrane|0016020||IEA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=oligopeptide transport|0006857||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461495.1;locus_tag=C9F05_RS08265;product=dipeptide permease DtpD;protein_id=WP_000856793.1;transl_table=11
NZ_PYKE01000111.1	RefSeq	gene	5228	5566	.	-	.	ID=gene-C9F05_RS08270;Name=glnB;gbkey=Gene;gene=glnB;gene_biotype=protein_coding;locus_tag=C9F05_RS08270;old_locus_tag=C9F05_08465
NZ_PYKE01000111.1	Protein Homology	CDS	5228	5566	.	-	0	ID=cds-WP_000717694.1;Parent=gene-C9F05_RS08270;Dbxref=GenBank:WP_000717694.1;Name=WP_000717694.1;gbkey=CDS;gene=glnB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017373484.1;locus_tag=C9F05_RS08270;product=nitrogen regulatory protein P-II;protein_id=WP_000717694.1;transl_table=11
NZ_PYKE01000111.1	RefSeq	gene	5643	6977	.	-	.	ID=gene-C9F05_RS08275;Name=glrR;gbkey=Gene;gene=glrR;gene_biotype=protein_coding;locus_tag=C9F05_RS08275;old_locus_tag=C9F05_08470
NZ_PYKE01000111.1	Protein Homology	CDS	5643	6977	.	-	0	ID=cds-WP_024131115.1;Parent=gene-C9F05_RS08275;Dbxref=GenBank:WP_024131115.1;Name=WP_024131115.1;Ontology_term=GO:0000160,GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;gene=glrR;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311447.1;locus_tag=C9F05_RS08275;product=two-component system response regulator GlrR;protein_id=WP_024131115.1;transl_table=11
NZ_PYKE01000111.1	RefSeq	gene	6977	7741	.	-	.	ID=gene-C9F05_RS08280;Name=qseG;gbkey=Gene;gene=qseG;gene_biotype=protein_coding;locus_tag=C9F05_RS08280;old_locus_tag=C9F05_08475
NZ_PYKE01000111.1	Protein Homology	CDS	6977	7741	.	-	0	ID=cds-WP_001054239.1;Parent=gene-C9F05_RS08280;Dbxref=GenBank:WP_001054239.1;Name=WP_001054239.1;gbkey=CDS;gene=qseG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461498.1;locus_tag=C9F05_RS08280;product=two-component system QseEF-associated lipoprotein QseG;protein_id=WP_001054239.1;transl_table=11
NZ_PYKE01000111.1	RefSeq	gene	7743	9173	.	-	.	ID=gene-C9F05_RS08285;Name=qseE;gbkey=Gene;gene=qseE;gene_biotype=protein_coding;locus_tag=C9F05_RS08285;old_locus_tag=C9F05_08480
NZ_PYKE01000111.1	Protein Homology	CDS	7743	9173	.	-	0	ID=cds-WP_001676035.1;Parent=gene-C9F05_RS08285;Dbxref=GenBank:WP_001676035.1;Name=WP_001676035.1;gbkey=CDS;gene=qseE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001676035.1;locus_tag=C9F05_RS08285;product=two component system sensor histidine kinase QseE/GlrK;protein_id=WP_001676035.1;transl_table=11
NZ_PYKE01000111.1	RefSeq	gene	9678	13565	.	-	.	ID=gene-C9F05_RS08290;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;gene_synonym=purI;locus_tag=C9F05_RS08290;old_locus_tag=C9F05_08485
NZ_PYKE01000111.1	Protein Homology	CDS	9678	13565	.	-	0	ID=cds-WP_135370175.1;Parent=gene-C9F05_RS08290;Dbxref=GenBank:WP_135370175.1;Name=WP_135370175.1;Ontology_term=GO:0004642;gbkey=CDS;gene=purL;go_function=phosphoribosylformylglycinamidine synthase activity|0004642||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461500.1;locus_tag=C9F05_RS08290;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_135370175.1;transl_table=11
NZ_PYKE01000111.1	RefSeq	gene	13590	13768	.	+	.	ID=gene-C9F05_RS08295;Name=C9F05_RS08295;end_range=13768,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08295;old_locus_tag=C9F05_08490;partial=true
NZ_PYKE01000111.1	Protein Homology	CDS	13590	13768	.	+	0	ID=cds-WP_135370176.1;Parent=gene-C9F05_RS08295;Dbxref=GenBank:WP_135370176.1;Name=WP_135370176.1;end_range=13768,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001669324.1;locus_tag=C9F05_RS08295;partial=true;product=hypothetical protein;protein_id=WP_135370176.1;transl_table=11
##sequence-region NZ_PYKE01000334.1 1 13368
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000334.1	RefSeq	region	1	13368	.	+	.	ID=NZ_PYKE01000334.1:1..13368;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000334.1	RefSeq	gene	1	827	.	+	.	ID=gene-C9F05_RS22560;Name=C9F05_RS22560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22560;old_locus_tag=C9F05_23155;partial=true;start_range=.,1
NZ_PYKE01000334.1	Protein Homology	CDS	1	827	.	+	2	ID=cds-WP_255121313.1;Parent=gene-C9F05_RS22560;Dbxref=GenBank:WP_255121313.1;Name=WP_255121313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461995.3;locus_tag=C9F05_RS22560;partial=true;product=alpha/beta fold hydrolase;protein_id=WP_255121313.1;start_range=.,1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	1032	1952	.	+	.	ID=gene-C9F05_RS22565;Name=speB;gbkey=Gene;gene=speB;gene_biotype=protein_coding;locus_tag=C9F05_RS22565;old_locus_tag=C9F05_23160
NZ_PYKE01000334.1	Protein Homology	CDS	1032	1952	.	+	0	ID=cds-WP_000105550.1;Parent=gene-C9F05_RS22565;Dbxref=GenBank:WP_000105550.1;Name=WP_000105550.1;Ontology_term=GO:0008295,GO:0008783;gbkey=CDS;gene=speB;go_function=agmatinase activity|0008783||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461994.1;locus_tag=C9F05_RS22565;product=agmatinase;protein_id=WP_000105550.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	pseudogene	1956	2040	.	+	.	ID=gene-C9F05_RS24215;Name=C9F05_RS24215;end_range=2040,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24215;old_locus_tag=C9F05_23165;partial=true;pseudo=true;start_range=.,1956
NZ_PYKE01000334.1	Protein Homology	CDS	1956	2040	.	+	0	ID=cds-C9F05_RS24215;Parent=gene-C9F05_RS24215;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2040,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=C9F05_RS24215;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1956;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	2053	2811	.	-	.	ID=gene-C9F05_RS22575;Name=C9F05_RS22575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22575;old_locus_tag=C9F05_23170
NZ_PYKE01000334.1	Protein Homology	CDS	2053	2811	.	-	0	ID=cds-WP_000701830.1;Parent=gene-C9F05_RS22575;Dbxref=GenBank:WP_000701830.1;Name=WP_000701830.1;Ontology_term=GO:0004222,GO:0008237,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461993.1;locus_tag=C9F05_RS22575;product=M48 family metallopeptidase;protein_id=WP_000701830.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	3087	5078	.	+	.	ID=gene-C9F05_RS22580;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=C9F05_RS22580;old_locus_tag=C9F05_23175
NZ_PYKE01000334.1	Protein Homology	CDS	3087	5078	.	+	0	ID=cds-WP_080083340.1;Parent=gene-C9F05_RS22580;Dbxref=GenBank:WP_080083340.1;Name=WP_080083340.1;Ontology_term=GO:0004802;gbkey=CDS;gene=tkt;go_function=transketolase activity|0004802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461992.1;locus_tag=C9F05_RS22580;product=transketolase;protein_id=WP_080083340.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	5122	5778	.	-	.	ID=gene-C9F05_RS22585;Name=C9F05_RS22585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22585;old_locus_tag=C9F05_23180
NZ_PYKE01000334.1	Protein Homology	CDS	5122	5778	.	-	0	ID=cds-WP_020899194.1;Parent=gene-C9F05_RS22585;Dbxref=GenBank:WP_020899194.1;Name=WP_020899194.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461991.1;locus_tag=C9F05_RS22585;product=ABC transporter ATP-binding protein;protein_id=WP_020899194.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	5772	6449	.	-	.	ID=gene-C9F05_RS22590;Name=C9F05_RS22590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22590;old_locus_tag=C9F05_23185
NZ_PYKE01000334.1	Protein Homology	CDS	5772	6449	.	-	0	ID=cds-WP_001517914.1;Parent=gene-C9F05_RS22590;Dbxref=GenBank:WP_001517914.1;Name=WP_001517914.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461990.1;locus_tag=C9F05_RS22590;product=ABC transporter ATP-binding protein;protein_id=WP_001517914.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	6437	7144	.	-	.	ID=gene-C9F05_RS22595;Name=C9F05_RS22595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22595;old_locus_tag=C9F05_23190
NZ_PYKE01000334.1	Protein Homology	CDS	6437	7144	.	-	0	ID=cds-WP_001524856.1;Parent=gene-C9F05_RS22595;Dbxref=GenBank:WP_001524856.1;Name=WP_001524856.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461989.1;locus_tag=C9F05_RS22595;product=energy-coupling factor transporter transmembrane component T;protein_id=WP_001524856.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	7145	7723	.	-	.	ID=gene-C9F05_RS22600;Name=C9F05_RS22600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22600;old_locus_tag=C9F05_23195
NZ_PYKE01000334.1	Protein Homology	CDS	7145	7723	.	-	0	ID=cds-WP_080190285.1;Parent=gene-C9F05_RS22600;Dbxref=GenBank:WP_080190285.1;Name=WP_080190285.1;Ontology_term=GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461988.1;locus_tag=C9F05_RS22600;product=ECF transporter S component;protein_id=WP_080190285.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	7749	8174	.	-	.	ID=gene-C9F05_RS22605;Name=C9F05_RS22605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22605;old_locus_tag=C9F05_23200
NZ_PYKE01000334.1	Protein Homology	CDS	7749	8174	.	-	0	ID=cds-WP_000218564.1;Parent=gene-C9F05_RS22605;Dbxref=GenBank:WP_000218564.1;Name=WP_000218564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461987.1;locus_tag=C9F05_RS22605;product=PPC domain-containing DNA-binding protein;protein_id=WP_000218564.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	8548	9594	.	+	.	ID=gene-C9F05_RS22615;Name=epd;gbkey=Gene;gene=epd;gene_biotype=protein_coding;locus_tag=C9F05_RS22615;old_locus_tag=C9F05_23210
NZ_PYKE01000334.1	Protein Homology	CDS	8548	9594	.	+	0	ID=cds-WP_000218338.1;Parent=gene-C9F05_RS22615;Dbxref=GenBank:WP_000218338.1;Name=WP_000218338.1;Ontology_term=GO:0042823,GO:0048001,GO:0051287;gbkey=CDS;gene=epd;go_function=erythrose-4-phosphate dehydrogenase activity|0048001||IEA,NAD binding|0051287||IEA;go_process=pyridoxal phosphate biosynthetic process|0042823||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461986.1;locus_tag=C9F05_RS22615;product=erythrose-4-phosphate dehydrogenase;protein_id=WP_000218338.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	9616	10779	.	+	.	ID=gene-C9F05_RS22620;Name=pgk;gbkey=Gene;gene=pgk;gene_biotype=protein_coding;locus_tag=C9F05_RS22620;old_locus_tag=C9F05_23215
NZ_PYKE01000334.1	Protein Homology	CDS	9616	10779	.	+	0	ID=cds-WP_000111274.1;Parent=gene-C9F05_RS22620;Dbxref=GenBank:WP_000111274.1;Name=WP_000111274.1;gbkey=CDS;gene=pgk;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005761248.1;locus_tag=C9F05_RS22620;product=phosphoglycerate kinase;protein_id=WP_000111274.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	10881	11960	.	+	.	ID=gene-C9F05_RS22625;Name=fbaA;gbkey=Gene;gene=fbaA;gene_biotype=protein_coding;locus_tag=C9F05_RS22625;old_locus_tag=C9F05_23220
NZ_PYKE01000334.1	Protein Homology	CDS	10881	11960	.	+	0	ID=cds-WP_000034386.1;Parent=gene-C9F05_RS22625;Dbxref=GenBank:WP_000034386.1;Name=WP_000034386.1;Ontology_term=GO:0005975,GO:0006096,GO:0004332,GO:0008270;gbkey=CDS;gene=fbaA;go_function=fructose-bisphosphate aldolase activity|0004332||IEA,zinc ion binding|0008270||IEA;go_process=carbohydrate metabolic process|0005975||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505616.1;locus_tag=C9F05_RS22625;product=class II fructose-bisphosphate aldolase;protein_id=WP_000034386.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	gene	12187	13047	.	+	.	ID=gene-C9F05_RS22630;Name=C9F05_RS22630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22630;old_locus_tag=C9F05_23225
NZ_PYKE01000334.1	Protein Homology	CDS	12187	13047	.	+	0	ID=cds-WP_000389833.1;Parent=gene-C9F05_RS22630;Dbxref=GenBank:WP_000389833.1;Name=WP_000389833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461983.1;locus_tag=C9F05_RS22630;product=small-conductance mechanosensitive channel MscS;protein_id=WP_000389833.1;transl_table=11
NZ_PYKE01000334.1	RefSeq	pseudogene	13248	13368	.	+	.	ID=gene-C9F05_RS22635;Name=C9F05_RS22635;end_range=13368,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS22635;old_locus_tag=C9F05_23230;partial=true;pseudo=true
NZ_PYKE01000334.1	Protein Homology	CDS	13248	13368	.	+	0	ID=cds-C9F05_RS22635;Parent=gene-C9F05_RS22635;Note=Involved in the export of arginine%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=13368,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461982.1;locus_tag=C9F05_RS22635;partial=true;product=arginine transporter;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000222.1 1 13349
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000222.1	RefSeq	region	1	13349	.	+	.	ID=NZ_PYKE01000222.1:1..13349;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000222.1	RefSeq	gene	1	268	.	-	.	ID=gene-C9F05_RS14680;Name=C9F05_RS14680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14680;old_locus_tag=C9F05_15090;partial=true;start_range=.,1
NZ_PYKE01000222.1	Protein Homology	CDS	1	268	.	-	0	ID=cds-WP_135370410.1;Parent=gene-C9F05_RS14680;Dbxref=GenBank:WP_135370410.1;Name=WP_135370410.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462719.1;locus_tag=C9F05_RS14680;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_135370410.1;start_range=.,1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	289	891	.	-	.	ID=gene-C9F05_RS14685;Name=napC;gbkey=Gene;gene=napC;gene_biotype=protein_coding;locus_tag=C9F05_RS14685;old_locus_tag=C9F05_15095
NZ_PYKE01000222.1	Protein Homology	CDS	289	891	.	-	0	ID=cds-WP_000431778.1;Parent=gene-C9F05_RS14685;Dbxref=GenBank:WP_000431778.1;Name=WP_000431778.1;gbkey=CDS;gene=napC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461198.1;locus_tag=C9F05_RS14685;product=cytochrome c-type protein NapC;protein_id=WP_000431778.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	901	1350	.	-	.	ID=gene-C9F05_RS14690;Name=napB;gbkey=Gene;gene=napB;gene_biotype=protein_coding;locus_tag=C9F05_RS14690;old_locus_tag=C9F05_15100
NZ_PYKE01000222.1	Protein Homology	CDS	901	1350	.	-	0	ID=cds-WP_000835182.1;Parent=gene-C9F05_RS14690;Dbxref=GenBank:WP_000835182.1;Name=WP_000835182.1;gbkey=CDS;gene=napB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461199.1;locus_tag=C9F05_RS14690;product=nitrate reductase cytochrome c-type subunit;protein_id=WP_000835182.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	1466	2335	.	-	.	ID=gene-C9F05_RS14695;Name=napH;gbkey=Gene;gene=napH;gene_biotype=protein_coding;locus_tag=C9F05_RS14695;old_locus_tag=C9F05_15110
NZ_PYKE01000222.1	Protein Homology	CDS	1466	2335	.	-	0	ID=cds-WP_000013529.1;Parent=gene-C9F05_RS14695;Dbxref=GenBank:WP_000013529.1;Name=WP_000013529.1;gbkey=CDS;gene=napH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461200.1;locus_tag=C9F05_RS14695;product=quinol dehydrogenase ferredoxin subunit NapH;protein_id=WP_000013529.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	2322	3017	.	-	.	ID=gene-C9F05_RS14700;Name=napG;gbkey=Gene;gene=napG;gene_biotype=protein_coding;locus_tag=C9F05_RS14700;old_locus_tag=C9F05_15115
NZ_PYKE01000222.1	Protein Homology	CDS	2322	3017	.	-	0	ID=cds-WP_000091682.1;Parent=gene-C9F05_RS14700;Dbxref=GenBank:WP_000091682.1;Name=WP_000091682.1;gbkey=CDS;gene=napG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461201.1;locus_tag=C9F05_RS14700;product=ferredoxin-type protein NapG;protein_id=WP_000091682.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	3024	5510	.	-	.	ID=gene-C9F05_RS14705;Name=napA;gbkey=Gene;gene=napA;gene_biotype=protein_coding;locus_tag=C9F05_RS14705;old_locus_tag=C9F05_15120
NZ_PYKE01000222.1	Protein Homology	CDS	3024	5510	.	-	0	ID=cds-WP_000778097.1;Parent=gene-C9F05_RS14705;Dbxref=GenBank:WP_000778097.1;Name=WP_000778097.1;Ontology_term=GO:0008940,GO:0030151,GO:0043546,GO:0051539;gbkey=CDS;gene=napA;go_function=nitrate reductase activity|0008940||IEA,molybdenum ion binding|0030151||IEA,molybdopterin cofactor binding|0043546||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461202.1;locus_tag=C9F05_RS14705;product=nitrate reductase catalytic subunit NapA;protein_id=WP_000778097.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	5507	5770	.	-	.	ID=gene-C9F05_RS14710;Name=napD;gbkey=Gene;gene=napD;gene_biotype=protein_coding;locus_tag=C9F05_RS14710;old_locus_tag=C9F05_15125
NZ_PYKE01000222.1	Protein Homology	CDS	5507	5770	.	-	0	ID=cds-WP_001260058.1;Parent=gene-C9F05_RS14710;Dbxref=GenBank:WP_001260058.1;Name=WP_001260058.1;gbkey=CDS;gene=napD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461203.1;locus_tag=C9F05_RS14710;product=chaperone NapD;protein_id=WP_001260058.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	5760	6251	.	-	.	ID=gene-C9F05_RS14715;Name=napF;gbkey=Gene;gene=napF;gene_biotype=protein_coding;locus_tag=C9F05_RS14715;old_locus_tag=C9F05_15130
NZ_PYKE01000222.1	Protein Homology	CDS	5760	6251	.	-	0	ID=cds-WP_000228069.1;Parent=gene-C9F05_RS14715;Dbxref=GenBank:WP_000228069.1;Name=WP_000228069.1;Ontology_term=GO:0051539;gbkey=CDS;gene=napF;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461204.1;locus_tag=C9F05_RS14715;product=ferredoxin-type protein NapF;protein_id=WP_000228069.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	6665	7159	.	+	.	ID=gene-C9F05_RS14720;Name=eco;gbkey=Gene;gene=eco;gene_biotype=protein_coding;locus_tag=C9F05_RS14720;old_locus_tag=C9F05_15135
NZ_PYKE01000222.1	Protein Homology	CDS	6665	7159	.	+	0	ID=cds-WP_000781589.1;Parent=gene-C9F05_RS14720;Dbxref=GenBank:WP_000781589.1;Name=WP_000781589.1;Ontology_term=GO:0004867;gbkey=CDS;gene=eco;go_function=serine-type endopeptidase inhibitor activity|0004867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461205.1;locus_tag=C9F05_RS14720;product=serine protease inhibitor ecotin;protein_id=WP_000781589.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	7368	9011	.	-	.	ID=gene-C9F05_RS14725;Name=C9F05_RS14725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14725;old_locus_tag=C9F05_15140
NZ_PYKE01000222.1	Protein Homology	CDS	7368	9011	.	-	0	ID=cds-WP_000421584.1;Parent=gene-C9F05_RS14725;Dbxref=GenBank:WP_000421584.1;Name=WP_000421584.1;Ontology_term=GO:0015833,GO:0140359,GO:1904680;gbkey=CDS;go_function=ABC-type transporter activity|0140359||IEA,peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461206.1;locus_tag=C9F05_RS14725;product=multidrug ABC transporter permease/ATP-binding protein;protein_id=WP_000421584.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	9087	9737	.	-	.	ID=gene-C9F05_RS14730;Name=alkB;gbkey=Gene;gene=alkB;gene_biotype=protein_coding;locus_tag=C9F05_RS14730;old_locus_tag=C9F05_15145
NZ_PYKE01000222.1	Protein Homology	CDS	9087	9737	.	-	0	ID=cds-WP_135370411.1;Parent=gene-C9F05_RS14730;Dbxref=GenBank:WP_135370411.1;Name=WP_135370411.1;gbkey=CDS;gene=alkB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461207.1;locus_tag=C9F05_RS14730;product=DNA oxidative demethylase AlkB;protein_id=WP_135370411.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	9740	10801	.	-	.	ID=gene-C9F05_RS14735;Name=ada;gbkey=Gene;gene=ada;gene_biotype=protein_coding;locus_tag=C9F05_RS14735;old_locus_tag=C9F05_15150
NZ_PYKE01000222.1	Protein Homology	CDS	9740	10801	.	-	0	ID=cds-WP_000975970.1;Parent=gene-C9F05_RS14735;Dbxref=GenBank:WP_000975970.1;Name=WP_000975970.1;Ontology_term=GO:0006281,GO:0006355,GO:0003700;gbkey=CDS;gene=ada;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=DNA repair|0006281||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461208.1;locus_tag=C9F05_RS14735;product=bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;protein_id=WP_000975970.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	10882	11934	.	-	.	ID=gene-C9F05_RS14740;Name=apbE;gbkey=Gene;gene=apbE;gene_biotype=protein_coding;locus_tag=C9F05_RS14740;old_locus_tag=C9F05_15155
NZ_PYKE01000222.1	Protein Homology	CDS	10882	11934	.	-	0	ID=cds-WP_135370412.1;Parent=gene-C9F05_RS14740;Dbxref=GenBank:WP_135370412.1;Name=WP_135370412.1;Ontology_term=GO:0017013;gbkey=CDS;gene=apbE;go_process=protein flavinylation|0017013||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461209.1;locus_tag=C9F05_RS14740;product=FAD:protein FMN transferase ApbE;protein_id=WP_135370412.1;transl_table=11
NZ_PYKE01000222.1	RefSeq	gene	12049	13185	.	-	.	ID=gene-C9F05_RS14745;Name=C9F05_RS14745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14745;old_locus_tag=C9F05_15160
NZ_PYKE01000222.1	Protein Homology	CDS	12049	13185	.	-	0	ID=cds-WP_000865521.1;Parent=gene-C9F05_RS14745;Dbxref=GenBank:WP_000865521.1;Name=WP_000865521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461210.1;locus_tag=C9F05_RS14745;product=porin OmpC;protein_id=WP_000865521.1;transl_table=11
##sequence-region NZ_PYKE01000159.1 1 49809
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000159.1	RefSeq	region	1	49809	.	+	.	ID=NZ_PYKE01000159.1:1..49809;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000159.1	RefSeq	gene	192	707	.	-	.	ID=gene-C9F05_RS11095;Name=mobB;gbkey=Gene;gene=mobB;gene_biotype=protein_coding;locus_tag=C9F05_RS11095;old_locus_tag=C9F05_11380
NZ_PYKE01000159.1	Protein Homology	CDS	192	707	.	-	0	ID=cds-WP_010989085.1;Parent=gene-C9F05_RS11095;Dbxref=GenBank:WP_010989085.1;Name=WP_010989085.1;Ontology_term=GO:0006777,GO:0005525;gbkey=CDS;gene=mobB;go_function=GTP binding|0005525||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462873.1;locus_tag=C9F05_RS11095;product=molybdopterin-guanine dinucleotide biosynthesis protein MobB;protein_id=WP_010989085.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	704	1288	.	-	.	ID=gene-C9F05_RS11100;Name=mobA;gbkey=Gene;gene=mobA;gene_biotype=protein_coding;locus_tag=C9F05_RS11100;old_locus_tag=C9F05_11385
NZ_PYKE01000159.1	Protein Homology	CDS	704	1288	.	-	0	ID=cds-WP_079903158.1;Parent=gene-C9F05_RS11100;Dbxref=GenBank:WP_079903158.1;Name=WP_079903158.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=mobA;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462874.1;locus_tag=C9F05_RS11100;product=molybdenum cofactor guanylyltransferase MobA;protein_id=WP_079903158.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	1358	1627	.	+	.	ID=gene-C9F05_RS11105;Name=C9F05_RS11105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11105;old_locus_tag=C9F05_11390
NZ_PYKE01000159.1	Protein Homology	CDS	1358	1627	.	+	0	ID=cds-WP_135370274.1;Parent=gene-C9F05_RS11105;Dbxref=GenBank:WP_135370274.1;Name=WP_135370274.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966571.1;locus_tag=C9F05_RS11105;product=YihD family protein;protein_id=WP_135370274.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	1704	2690	.	+	.	ID=gene-C9F05_RS11110;Name=C9F05_RS11110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11110;old_locus_tag=C9F05_11395
NZ_PYKE01000159.1	Protein Homology	CDS	1704	2690	.	+	0	ID=cds-WP_001583726.1;Parent=gene-C9F05_RS11110;Dbxref=GenBank:WP_001583726.1;Name=WP_001583726.1;Ontology_term=GO:0006468,GO:0004674;gbkey=CDS;go_function=protein serine/threonine kinase activity|0004674||IEA;go_process=protein phosphorylation|0006468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462876.1;locus_tag=C9F05_RS11110;product=serine/threonine protein kinase;protein_id=WP_001583726.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	2707	3330	.	+	.	ID=gene-C9F05_RS11115;Name=dsbA;gbkey=Gene;gene=dsbA;gene_biotype=protein_coding;locus_tag=C9F05_RS11115;old_locus_tag=C9F05_11400
NZ_PYKE01000159.1	Protein Homology	CDS	2707	3330	.	+	0	ID=cds-WP_000725364.1;Parent=gene-C9F05_RS11115;Dbxref=GenBank:WP_000725364.1;Name=WP_000725364.1;Ontology_term=GO:0016491;gbkey=CDS;gene=dsbA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462877.1;locus_tag=C9F05_RS11115;product=thiol:disulfide interchange protein DsbA;protein_id=WP_000725364.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	3343	4251	.	-	.	ID=gene-C9F05_RS11120;Name=C9F05_RS11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11120;old_locus_tag=C9F05_11405
NZ_PYKE01000159.1	Protein Homology	CDS	3343	4251	.	-	0	ID=cds-WP_135370275.1;Parent=gene-C9F05_RS11120;Dbxref=GenBank:WP_135370275.1;Name=WP_135370275.1;Ontology_term=GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462878.1;locus_tag=C9F05_RS11120;product=acyltransferase;protein_id=WP_135370275.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	4639	7425	.	+	.	ID=gene-C9F05_RS11130;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=C9F05_RS11130;old_locus_tag=C9F05_11415
NZ_PYKE01000159.1	Protein Homology	CDS	4639	7425	.	+	0	ID=cds-WP_000249972.1;Parent=gene-C9F05_RS11130;Dbxref=GenBank:WP_000249972.1;Name=WP_000249972.1;Ontology_term=GO:0006261,GO:0003676,GO:0003677,GO:0003887,GO:0008408;gbkey=CDS;gene=polA;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA-templated DNA replication|0006261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462879.1;locus_tag=C9F05_RS11130;product=DNA polymerase I;protein_id=WP_000249972.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	7592	7639	.	+	.	ID=gene-C9F05_RS24150;Name=C9F05_RS24150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24150
NZ_PYKE01000159.1	Protein Homology	CDS	7592	7639	.	+	0	ID=cds-WP_071892919.1;Parent=gene-C9F05_RS24150;Dbxref=GenBank:WP_071892919.1;Name=WP_071892919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_013606034.1;locus_tag=C9F05_RS24150;product=spot 42 RNA%2C inhibition of DNA synthesis;protein_id=WP_071892919.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	7760	8392	.	-	.	ID=gene-C9F05_RS11135;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=C9F05_RS11135;old_locus_tag=C9F05_11420
NZ_PYKE01000159.1	Protein Homology	CDS	7760	8392	.	-	0	ID=cds-WP_000183327.1;Parent=gene-C9F05_RS11135;Dbxref=GenBank:WP_000183327.1;Name=WP_000183327.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462881.1;locus_tag=C9F05_RS11135;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=WP_000183327.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	8632	8856	.	+	.	ID=gene-C9F05_RS11140;Name=C9F05_RS11140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11140;old_locus_tag=C9F05_11425
NZ_PYKE01000159.1	Protein Homology	CDS	8632	8856	.	+	0	ID=cds-WP_001541209.1;Parent=gene-C9F05_RS11140;Dbxref=GenBank:WP_001541209.1;Name=WP_001541209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462882.1;locus_tag=C9F05_RS11140;product=hypothetical protein;protein_id=WP_001541209.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	8975	9490	.	+	.	ID=gene-C9F05_RS11145;Name=yihI;gbkey=Gene;gene=yihI;gene_biotype=protein_coding;locus_tag=C9F05_RS11145;old_locus_tag=C9F05_11430
NZ_PYKE01000159.1	Protein Homology	CDS	8975	9490	.	+	0	ID=cds-WP_000743292.1;Parent=gene-C9F05_RS11145;Dbxref=GenBank:WP_000743292.1;Name=WP_000743292.1;gbkey=CDS;gene=yihI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462883.1;locus_tag=C9F05_RS11145;product=Der GTPase-activating protein YihI;protein_id=WP_000743292.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	9679	11052	.	+	.	ID=gene-C9F05_RS11150;Name=hemN;gbkey=Gene;gene=hemN;gene_biotype=protein_coding;locus_tag=C9F05_RS11150;old_locus_tag=C9F05_11435
NZ_PYKE01000159.1	Protein Homology	CDS	9679	11052	.	+	0	ID=cds-WP_000003528.1;Parent=gene-C9F05_RS11150;Dbxref=GenBank:WP_000003528.1;Name=WP_000003528.1;Ontology_term=GO:0006779,GO:0004109,GO:0005737;gbkey=CDS;gene=hemN;go_component=cytoplasm|0005737||IEA;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462884.1;locus_tag=C9F05_RS11150;product=oxygen-independent coproporphyrinogen III oxidase;protein_id=WP_000003528.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	11142	11252	.	-	.	ID=gene-C9F05_RS11155;Name=C9F05_RS11155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11155;old_locus_tag=C9F05_11440
NZ_PYKE01000159.1	Protein Homology	CDS	11142	11252	.	-	0	ID=cds-WP_001578131.1;Parent=gene-C9F05_RS11155;Dbxref=GenBank:WP_001578131.1;Name=WP_001578131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791260.1;locus_tag=C9F05_RS11155;product=YshB family small membrane protein;protein_id=WP_001578131.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	11365	12774	.	-	.	ID=gene-C9F05_RS11160;Name=glnG;gbkey=Gene;gene=glnG;gene_biotype=protein_coding;locus_tag=C9F05_RS11160;old_locus_tag=C9F05_11445
NZ_PYKE01000159.1	Protein Homology	CDS	11365	12774	.	-	0	ID=cds-WP_135370276.1;Parent=gene-C9F05_RS11160;Dbxref=GenBank:WP_135370276.1;Name=WP_135370276.1;Ontology_term=GO:0006355,GO:0043565;gbkey=CDS;gene=glnG;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133942.1;locus_tag=C9F05_RS11160;product=nitrogen regulation protein NR(I);protein_id=WP_135370276.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	12783	13832	.	-	.	ID=gene-C9F05_RS11165;Name=glnL;gbkey=Gene;gene=glnL;gene_biotype=protein_coding;locus_tag=C9F05_RS11165;old_locus_tag=C9F05_11450
NZ_PYKE01000159.1	Protein Homology	CDS	12783	13832	.	-	0	ID=cds-WP_000146194.1;Parent=gene-C9F05_RS11165;Dbxref=GenBank:WP_000146194.1;Name=WP_000146194.1;Ontology_term=GO:0006355,GO:0007165,GO:0016310,GO:0000155;gbkey=CDS;gene=glnL;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462886.1;locus_tag=C9F05_RS11165;product=nitrogen regulation protein NR(II);protein_id=WP_000146194.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	14107	15516	.	-	.	ID=gene-C9F05_RS11175;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=C9F05_RS11175;old_locus_tag=C9F05_11460
NZ_PYKE01000159.1	Protein Homology	CDS	14107	15516	.	-	0	ID=cds-WP_001271699.1;Parent=gene-C9F05_RS11175;Dbxref=GenBank:WP_001271699.1;Name=WP_001271699.1;Ontology_term=GO:0006542,GO:0008152,GO:0004356;gbkey=CDS;gene=glnA;go_function=glutamine synthetase activity|0004356||IEA;go_process=glutamine biosynthetic process|0006542||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233234.1;locus_tag=C9F05_RS11175;product=glutamate--ammonia ligase;protein_id=WP_001271699.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	15892	17715	.	+	.	ID=gene-C9F05_RS11180;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=C9F05_RS11180;old_locus_tag=C9F05_11470
NZ_PYKE01000159.1	Protein Homology	CDS	15892	17715	.	+	0	ID=cds-WP_000572064.1;Parent=gene-C9F05_RS11180;Dbxref=GenBank:WP_000572064.1;Name=WP_000572064.1;gbkey=CDS;gene=typA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462889.1;locus_tag=C9F05_RS11180;product=ribosome-dependent GTPase TypA;protein_id=WP_000572064.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	17770	18504	.	-	.	ID=gene-C9F05_RS11185;Name=C9F05_RS11185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11185;old_locus_tag=C9F05_11475
NZ_PYKE01000159.1	Protein Homology	CDS	17770	18504	.	-	0	ID=cds-WP_135370277.1;Parent=gene-C9F05_RS11185;Dbxref=GenBank:WP_135370277.1;Name=WP_135370277.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462890.1;locus_tag=C9F05_RS11185;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_135370277.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	18489	19367	.	-	.	ID=gene-C9F05_RS11190;Name=C9F05_RS11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11190;old_locus_tag=C9F05_11480
NZ_PYKE01000159.1	Protein Homology	CDS	18489	19367	.	-	0	ID=cds-WP_080190212.1;Parent=gene-C9F05_RS11190;Dbxref=GenBank:WP_080190212.1;Name=WP_080190212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462891.1;locus_tag=C9F05_RS11190;product=STM4011 family radical SAM protein;protein_id=WP_080190212.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	19364	20605	.	-	.	ID=gene-C9F05_RS11195;Name=C9F05_RS11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11195;old_locus_tag=C9F05_11485
NZ_PYKE01000159.1	Protein Homology	CDS	19364	20605	.	-	0	ID=cds-WP_135370278.1;Parent=gene-C9F05_RS11195;Dbxref=GenBank:WP_135370278.1;Name=WP_135370278.1;Ontology_term=GO:0051536;gbkey=CDS;go_function=iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462892.1;locus_tag=C9F05_RS11195;product=STM4012 family radical SAM protein;protein_id=WP_135370278.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	20607	21482	.	-	.	ID=gene-C9F05_RS11200;Name=C9F05_RS11200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11200;old_locus_tag=C9F05_11490
NZ_PYKE01000159.1	Protein Homology	CDS	20607	21482	.	-	0	ID=cds-WP_135370279.1;Parent=gene-C9F05_RS11200;Dbxref=GenBank:WP_135370279.1;Name=WP_135370279.1;Ontology_term=GO:0008484;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462893.3;locus_tag=C9F05_RS11200;product=STM4013/SEN3800 family hydrolase;protein_id=WP_135370279.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	21475	22500	.	-	.	ID=gene-C9F05_RS11205;Name=C9F05_RS11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11205;old_locus_tag=C9F05_11495
NZ_PYKE01000159.1	Protein Homology	CDS	21475	22500	.	-	0	ID=cds-WP_000337354.1;Parent=gene-C9F05_RS11205;Dbxref=GenBank:WP_000337354.1;Name=WP_000337354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462894.3;locus_tag=C9F05_RS11205;product=STM4014 family protein;protein_id=WP_000337354.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	22513	23361	.	-	.	ID=gene-C9F05_RS11210;Name=C9F05_RS11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11210;old_locus_tag=C9F05_11500
NZ_PYKE01000159.1	Protein Homology	CDS	22513	23361	.	-	0	ID=cds-WP_135370280.1;Parent=gene-C9F05_RS11210;Dbxref=GenBank:WP_135370280.1;Name=WP_135370280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462895.1;locus_tag=C9F05_RS11210;product=STM4015 family protein;protein_id=WP_135370280.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	23518	24210	.	-	.	ID=gene-C9F05_RS11215;Name=ompL;gbkey=Gene;gene=ompL;gene_biotype=protein_coding;locus_tag=C9F05_RS11215;old_locus_tag=C9F05_11505
NZ_PYKE01000159.1	Protein Homology	CDS	23518	24210	.	-	0	ID=cds-WP_000838831.1;Parent=gene-C9F05_RS11215;Dbxref=GenBank:WP_000838831.1;Name=WP_000838831.1;gbkey=CDS;gene=ompL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462896.1;locus_tag=C9F05_RS11215;product=porin OmpL;protein_id=WP_000838831.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	24278	25696	.	-	.	ID=gene-C9F05_RS11220;Name=C9F05_RS11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11220;old_locus_tag=C9F05_11510
NZ_PYKE01000159.1	Protein Homology	CDS	24278	25696	.	-	0	ID=cds-WP_001112785.1;Parent=gene-C9F05_RS11220;Dbxref=GenBank:WP_001112785.1;Name=WP_001112785.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462897.1;locus_tag=C9F05_RS11220;product=MFS transporter;protein_id=WP_001112785.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	25742	27124	.	-	.	ID=gene-C9F05_RS11225;Name=C9F05_RS11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11225;old_locus_tag=C9F05_11515
NZ_PYKE01000159.1	Protein Homology	CDS	25742	27124	.	-	0	ID=cds-WP_000084233.1;Parent=gene-C9F05_RS11225;Dbxref=GenBank:WP_000084233.1;Name=WP_000084233.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000084232.1;locus_tag=C9F05_RS11225;product=MFS transporter;protein_id=WP_000084233.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	27170	29206	.	-	.	ID=gene-C9F05_RS11230;Name=C9F05_RS11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11230;old_locus_tag=C9F05_11520
NZ_PYKE01000159.1	Protein Homology	CDS	27170	29206	.	-	0	ID=cds-WP_135370281.1;Parent=gene-C9F05_RS11230;Dbxref=GenBank:WP_135370281.1;Name=WP_135370281.1;Ontology_term=GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001523759.1;locus_tag=C9F05_RS11230;product=alpha-glucosidase;protein_id=WP_135370281.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	29330	30205	.	-	.	ID=gene-C9F05_RS11235;Name=C9F05_RS11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11235;old_locus_tag=C9F05_11525
NZ_PYKE01000159.1	Protein Homology	CDS	29330	30205	.	-	0	ID=cds-WP_135370282.1;Parent=gene-C9F05_RS11235;Dbxref=GenBank:WP_135370282.1;Name=WP_135370282.1;Ontology_term=GO:0006810,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312828.1;locus_tag=C9F05_RS11235;product=sulfite exporter TauE/SafE family protein;protein_id=WP_135370282.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	30294	31196	.	-	.	ID=gene-C9F05_RS11240;Name=C9F05_RS11240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11240;old_locus_tag=C9F05_11530
NZ_PYKE01000159.1	Protein Homology	CDS	30294	31196	.	-	0	ID=cds-WP_024131638.1;Parent=gene-C9F05_RS11240;Dbxref=GenBank:WP_024131638.1;Name=WP_024131638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001611165.1;locus_tag=C9F05_RS11240;product=aldose-1-epimerase;protein_id=WP_024131638.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	31268	32509	.	-	.	ID=gene-C9F05_RS11245;Name=yihS;gbkey=Gene;gene=yihS;gene_biotype=protein_coding;locus_tag=C9F05_RS11245;old_locus_tag=C9F05_11535
NZ_PYKE01000159.1	Protein Homology	CDS	31268	32509	.	-	0	ID=cds-WP_000870940.1;Parent=gene-C9F05_RS11245;Dbxref=GenBank:WP_000870940.1;Name=WP_000870940.1;gbkey=CDS;gene=yihS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312830.1;locus_tag=C9F05_RS11245;product=sulfoquinovose isomerase;protein_id=WP_000870940.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	32525	33403	.	-	.	ID=gene-C9F05_RS11250;Name=yihT;gbkey=Gene;gene=yihT;gene_biotype=protein_coding;locus_tag=C9F05_RS11250;old_locus_tag=C9F05_11540
NZ_PYKE01000159.1	Protein Homology	CDS	32525	33403	.	-	0	ID=cds-WP_001067412.1;Parent=gene-C9F05_RS11250;Dbxref=GenBank:WP_001067412.1;Name=WP_001067412.1;gbkey=CDS;gene=yihT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462902.1;locus_tag=C9F05_RS11250;product=sulfofructosephosphate aldolase;protein_id=WP_001067412.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	33426	34322	.	-	.	ID=gene-C9F05_RS11255;Name=yihU;gbkey=Gene;gene=yihU;gene_biotype=protein_coding;locus_tag=C9F05_RS11255;old_locus_tag=C9F05_11545
NZ_PYKE01000159.1	Protein Homology	CDS	33426	34322	.	-	0	ID=cds-WP_023242402.1;Parent=gene-C9F05_RS11255;Dbxref=GenBank:WP_023242402.1;Name=WP_023242402.1;Ontology_term=GO:0016491;gbkey=CDS;gene=yihU;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462903.1;locus_tag=C9F05_RS11255;product=sulfolactaldehyde 3-reductase;protein_id=WP_023242402.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	34487	35383	.	+	.	ID=gene-C9F05_RS11260;Name=C9F05_RS11260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11260;old_locus_tag=C9F05_11550
NZ_PYKE01000159.1	Protein Homology	CDS	34487	35383	.	+	0	ID=cds-WP_001651900.1;Parent=gene-C9F05_RS11260;Dbxref=GenBank:WP_001651900.1;Name=WP_001651900.1;Ontology_term=GO:0005975,GO:0005524,GO:0016301;gbkey=CDS;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462904.3;locus_tag=C9F05_RS11260;product=sugar kinase;protein_id=WP_001651900.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	35417	36220	.	+	.	ID=gene-C9F05_RS11265;Name=C9F05_RS11265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11265;old_locus_tag=C9F05_11555
NZ_PYKE01000159.1	Protein Homology	CDS	35417	36220	.	+	0	ID=cds-WP_000059693.1;Parent=gene-C9F05_RS11265;Dbxref=GenBank:WP_000059693.1;Name=WP_000059693.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462905.1;locus_tag=C9F05_RS11265;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000059693.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	36411	37010	.	+	.	ID=gene-C9F05_RS11270;Name=yihX;gbkey=Gene;gene=yihX;gene_biotype=protein_coding;locus_tag=C9F05_RS11270;old_locus_tag=C9F05_11560
NZ_PYKE01000159.1	Protein Homology	CDS	36411	37010	.	+	0	ID=cds-WP_000965695.1;Parent=gene-C9F05_RS11270;Dbxref=GenBank:WP_000965695.1;Name=WP_000965695.1;gbkey=CDS;gene=yihX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462906.1;locus_tag=C9F05_RS11270;product=glucose-1-phosphatase;protein_id=WP_000965695.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	37004	37876	.	+	.	ID=gene-C9F05_RS11275;Name=C9F05_RS11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11275;old_locus_tag=C9F05_11565
NZ_PYKE01000159.1	Protein Homology	CDS	37004	37876	.	+	0	ID=cds-WP_000921423.1;Parent=gene-C9F05_RS11275;Dbxref=GenBank:WP_000921423.1;Name=WP_000921423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462907.1;locus_tag=C9F05_RS11275;product=virulence factor BrkB family protein;protein_id=WP_000921423.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	37873	38310	.	+	.	ID=gene-C9F05_RS11280;Name=dtd;gbkey=Gene;gene=dtd;gene_biotype=protein_coding;locus_tag=C9F05_RS11280;old_locus_tag=C9F05_11570
NZ_PYKE01000159.1	Protein Homology	CDS	37873	38310	.	+	0	ID=cds-WP_000560969.1;Parent=gene-C9F05_RS11280;Dbxref=GenBank:WP_000560969.1;Name=WP_000560969.1;Ontology_term=GO:0008152,GO:0004045;gbkey=CDS;gene=dtd;go_function=peptidyl-tRNA hydrolase activity|0004045||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000560980.1;locus_tag=C9F05_RS11280;product=D-aminoacyl-tRNA deacylase;protein_id=WP_000560969.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	38355	39296	.	+	.	ID=gene-C9F05_RS11285;Name=fabY;gbkey=Gene;gene=fabY;gene_biotype=protein_coding;gene_synonym=yiiD;locus_tag=C9F05_RS11285;old_locus_tag=C9F05_11575
NZ_PYKE01000159.1	Protein Homology	CDS	38355	39296	.	+	0	ID=cds-WP_001518251.1;Parent=gene-C9F05_RS11285;Dbxref=GenBank:WP_001518251.1;Name=WP_001518251.1;gbkey=CDS;gene=fabY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001666856.1;locus_tag=C9F05_RS11285;product=fatty acid biosynthesis protein FabY;protein_id=WP_001518251.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	39311	39757	.	-	.	ID=gene-C9F05_RS11290;Name=C9F05_RS11290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11290;old_locus_tag=C9F05_11580
NZ_PYKE01000159.1	Protein Homology	CDS	39311	39757	.	-	0	ID=cds-WP_080111132.1;Parent=gene-C9F05_RS11290;Dbxref=GenBank:WP_080111132.1;Name=WP_080111132.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462910.3;locus_tag=C9F05_RS11290;product=helix-turn-helix domain-containing protein;protein_id=WP_080111132.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	39754	40065	.	-	.	ID=gene-C9F05_RS11295;Name=C9F05_RS11295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11295;old_locus_tag=C9F05_11585
NZ_PYKE01000159.1	Protein Homology	CDS	39754	40065	.	-	0	ID=cds-WP_000558163.1;Parent=gene-C9F05_RS11295;Dbxref=GenBank:WP_000558163.1;Name=WP_000558163.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462911.1;locus_tag=C9F05_RS11295;product=type II toxin-antitoxin system HigB family toxin;protein_id=WP_000558163.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	40151	41080	.	-	.	ID=gene-C9F05_RS11300;Name=C9F05_RS11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11300;old_locus_tag=C9F05_11590
NZ_PYKE01000159.1	Protein Homology	CDS	40151	41080	.	-	0	ID=cds-WP_135370283.1;Parent=gene-C9F05_RS11300;Dbxref=GenBank:WP_135370283.1;Name=WP_135370283.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462912.1;locus_tag=C9F05_RS11300;product=alpha/beta hydrolase;protein_id=WP_135370283.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	41285	41527	.	+	.	ID=gene-C9F05_RS11305;Name=C9F05_RS11305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11305;old_locus_tag=C9F05_11595
NZ_PYKE01000159.1	Protein Homology	CDS	41285	41527	.	+	0	ID=cds-WP_001523745.1;Parent=gene-C9F05_RS11305;Dbxref=GenBank:WP_001523745.1;Name=WP_001523745.1;Ontology_term=GO:0006276,GO:0006355,GO:0032993;gbkey=CDS;go_component=protein-DNA complex|0032993||IEA;go_process=plasmid maintenance|0006276||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224335.1;locus_tag=C9F05_RS11305;product=CopG family transcriptional regulator;protein_id=WP_001523745.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	41527	41901	.	+	.	ID=gene-C9F05_RS11310;Name=C9F05_RS11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11310;old_locus_tag=C9F05_11600
NZ_PYKE01000159.1	Protein Homology	CDS	41527	41901	.	+	0	ID=cds-WP_000238494.1;Parent=gene-C9F05_RS11310;Dbxref=GenBank:WP_000238494.1;Name=WP_000238494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121821.1;locus_tag=C9F05_RS11310;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_000238494.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	41939	42868	.	-	.	ID=gene-C9F05_RS11315;Name=fdhE;gbkey=Gene;gene=fdhE;gene_biotype=protein_coding;locus_tag=C9F05_RS11315;old_locus_tag=C9F05_11605
NZ_PYKE01000159.1	Protein Homology	CDS	41939	42868	.	-	0	ID=cds-WP_000027730.1;Parent=gene-C9F05_RS11315;Dbxref=GenBank:WP_000027730.1;Name=WP_000027730.1;gbkey=CDS;gene=fdhE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121819.1;locus_tag=C9F05_RS11315;product=formate dehydrogenase accessory protein FdhE;protein_id=WP_000027730.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	42865	43500	.	-	.	ID=gene-C9F05_RS11320;Name=fdoI;gbkey=Gene;gene=fdoI;gene_biotype=protein_coding;locus_tag=C9F05_RS11320;old_locus_tag=C9F05_11610
NZ_PYKE01000159.1	Protein Homology	CDS	42865	43500	.	-	0	ID=cds-WP_000829025.1;Parent=gene-C9F05_RS11320;Dbxref=GenBank:WP_000829025.1;Name=WP_000829025.1;gbkey=CDS;gene=fdoI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462915.1;locus_tag=C9F05_RS11320;product=formate dehydrogenase cytochrome b556 subunit;protein_id=WP_000829025.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	43497	44399	.	-	.	ID=gene-C9F05_RS11325;Name=fdxH;gbkey=Gene;gene=fdxH;gene_biotype=protein_coding;locus_tag=C9F05_RS11325;old_locus_tag=C9F05_11615
NZ_PYKE01000159.1	Protein Homology	CDS	43497	44399	.	-	0	ID=cds-WP_000331361.1;Parent=gene-C9F05_RS11325;Dbxref=GenBank:WP_000331361.1;Name=WP_000331361.1;Ontology_term=GO:0015944,GO:0008863,GO:0051539,GO:0016020;gbkey=CDS;gene=fdxH;go_component=membrane|0016020||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=formate oxidation|0015944||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462916.1;locus_tag=C9F05_RS11325;product=formate dehydrogenase subunit beta;protein_id=WP_000331361.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	44412	47462	.	-	.	ID=gene-C9F05_RS11330;Name=fdnG;gbkey=Gene;gene=fdnG;gene_biotype=protein_coding;locus_tag=C9F05_RS11330;old_locus_tag=C9F05_11620
NZ_PYKE01000159.1	Protein Homology	CDS	44412	47462	.	-	0	ID=cds-WP_077248424.1;Parent=gene-C9F05_RS11330;Dbxref=GenBank:WP_077248424.1;Name=WP_077248424.1;Ontology_term=GO:0015942,GO:0008863,GO:0009055,GO:0043546,GO:0047111,GO:0009326;gbkey=CDS;gene=fdnG;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,electron transfer activity|0009055||IEA,molybdopterin cofactor binding|0043546||IEA,formate dehydrogenase (cytochrome-c-553) activity|0047111||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462917.1;locus_tag=C9F05_RS11330;product=formate dehydrogenase-N subunit alpha;protein_id=WP_077248424.1;transl_except=(pos:complement(46875..46877)%2Caa:Sec);transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	47657	48493	.	+	.	ID=gene-C9F05_RS11335;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=protein_coding;locus_tag=C9F05_RS11335;old_locus_tag=C9F05_11625
NZ_PYKE01000159.1	Protein Homology	CDS	47657	48493	.	+	0	ID=cds-WP_001059744.1;Parent=gene-C9F05_RS11335;Dbxref=GenBank:WP_001059744.1;Name=WP_001059744.1;Ontology_term=GO:0009061,GO:0015942,GO:0016783,GO:0009326;gbkey=CDS;gene=fdhD;go_component=formate dehydrogenase complex|0009326||IEA;go_function=sulfurtransferase activity|0016783||IEA;go_process=anaerobic respiration|0009061||IEA,formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462918.1;locus_tag=C9F05_RS11335;product=formate dehydrogenase accessory sulfurtransferase FdhD;protein_id=WP_001059744.1;transl_table=11
NZ_PYKE01000159.1	RefSeq	gene	48761	49792	.	-	.	ID=gene-C9F05_RS11340;Name=C9F05_RS11340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11340;old_locus_tag=C9F05_11630
NZ_PYKE01000159.1	Protein Homology	CDS	48761	49792	.	-	0	ID=cds-WP_000710967.1;Parent=gene-C9F05_RS11340;Dbxref=GenBank:WP_000710967.1;Name=WP_000710967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462919.1;locus_tag=C9F05_RS11340;product=YiiG family protein;protein_id=WP_000710967.1;transl_table=11
##sequence-region NZ_PYKE01000167.1 1 13141
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000167.1	RefSeq	region	1	13141	.	+	.	ID=NZ_PYKE01000167.1:1..13141;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000167.1	RefSeq	pseudogene	130	1170	.	+	.	ID=gene-C9F05_RS11560;Name=C9F05_RS11560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS11560;old_locus_tag=C9F05_11885;pseudo=true
NZ_PYKE01000167.1	Protein Homology	CDS	130	1170	.	+	0	ID=cds-C9F05_RS11560;Parent=gene-C9F05_RS11560;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014543172.1;locus_tag=C9F05_RS11560;product=IS481 family transposase;pseudo=true;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	1342	3453	.	+	.	ID=gene-C9F05_RS11565;Name=sspH1;gbkey=Gene;gene=sspH1;gene_biotype=protein_coding;locus_tag=C9F05_RS11565;old_locus_tag=C9F05_11890
NZ_PYKE01000167.1	Protein Homology	CDS	1342	3453	.	+	0	ID=cds-WP_135370293.1;Parent=gene-C9F05_RS11565;Dbxref=GenBank:WP_135370293.1;Name=WP_135370293.1;gbkey=CDS;gene=sspH1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000481981.1;locus_tag=C9F05_RS11565;product=type III secretion system effector E3 ubiquitin transferase SspH1;protein_id=WP_135370293.1;transl_table=11
NZ_PYKE01000167.1	RefSeq	pseudogene	3553	3780	.	+	.	ID=gene-C9F05_RS11570;Name=C9F05_RS11570;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS11570;old_locus_tag=C9F05_11900;partial=true;pseudo=true;start_range=.,3553
NZ_PYKE01000167.1	Protein Homology	CDS	3553	3780	.	+	0	ID=cds-C9F05_RS11570;Parent=gene-C9F05_RS11570;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008807729.1;locus_tag=C9F05_RS11570;partial=true;product=DUF4113 domain-containing protein;pseudo=true;start_range=.,3553;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	3773	4444	.	-	.	ID=gene-C9F05_RS11575;Name=C9F05_RS11575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11575;old_locus_tag=C9F05_11905
NZ_PYKE01000167.1	Protein Homology	CDS	3773	4444	.	-	0	ID=cds-WP_135370294.1;Parent=gene-C9F05_RS11575;Dbxref=GenBank:WP_135370294.1;Name=WP_135370294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000334630.1;locus_tag=C9F05_RS11575;product=SOS response-associated peptidase;protein_id=WP_135370294.1;transl_table=11
NZ_PYKE01000167.1	RefSeq	pseudogene	4675	4770	.	-	.	ID=gene-C9F05_RS23825;Name=C9F05_RS23825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23825;partial=true;pseudo=true;start_range=.,4675
NZ_PYKE01000167.1	Protein Homology	CDS	4675	4770	.	-	0	ID=cds-C9F05_RS23825;Parent=gene-C9F05_RS23825;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460860.1;locus_tag=C9F05_RS23825;partial=true;product=hypothetical protein;pseudo=true;start_range=.,4675;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	4767	5333	.	-	.	ID=gene-C9F05_RS11585;Name=C9F05_RS11585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11585;old_locus_tag=C9F05_11915
NZ_PYKE01000167.1	Protein Homology	CDS	4767	5333	.	-	0	ID=cds-WP_000916146.1;Parent=gene-C9F05_RS11585;Dbxref=GenBank:WP_000916146.1;Name=WP_000916146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460859.1;locus_tag=C9F05_RS11585;product=hydrolase;protein_id=WP_000916146.1;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	5658	7430	.	+	.	ID=gene-C9F05_RS11590;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=C9F05_RS11590;old_locus_tag=C9F05_11920
NZ_PYKE01000167.1	Protein Homology	CDS	5658	7430	.	+	0	ID=cds-WP_001258633.1;Parent=gene-C9F05_RS11590;Dbxref=GenBank:WP_001258633.1;Name=WP_001258633.1;Ontology_term=GO:0006422,GO:0004815,GO:0005524,GO:0005737;gbkey=CDS;gene=aspS;go_component=cytoplasm|0005737||IEA;go_function=aspartate-tRNA ligase activity|0004815||IEA,ATP binding|0005524||IEA;go_process=aspartyl-tRNA aminoacylation|0006422||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460858.1;locus_tag=C9F05_RS11590;product=aspartate--tRNA ligase;protein_id=WP_001258633.1;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	7524	7976	.	+	.	ID=gene-C9F05_RS11595;Name=nudB;gbkey=Gene;gene=nudB;gene_biotype=protein_coding;locus_tag=C9F05_RS11595;old_locus_tag=C9F05_11925
NZ_PYKE01000167.1	Protein Homology	CDS	7524	7976	.	+	0	ID=cds-WP_000653693.1;Parent=gene-C9F05_RS11595;Dbxref=GenBank:WP_000653693.1;Name=WP_000653693.1;Ontology_term=GO:0046656,GO:0008828,GO:0019177;gbkey=CDS;gene=nudB;go_function=dATP diphosphatase activity|0008828||IEA,dihydroneopterin triphosphate pyrophosphohydrolase activity|0019177||IEA;go_process=folic acid biosynthetic process|0046656||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460857.1;locus_tag=C9F05_RS11595;product=dihydroneopterin triphosphate diphosphatase;protein_id=WP_000653693.1;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	8006	8746	.	+	.	ID=gene-C9F05_RS11600;Name=C9F05_RS11600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11600;old_locus_tag=C9F05_11930
NZ_PYKE01000167.1	Protein Homology	CDS	8006	8746	.	+	0	ID=cds-WP_000907242.1;Parent=gene-C9F05_RS11600;Dbxref=GenBank:WP_000907242.1;Name=WP_000907242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000907250.1;locus_tag=C9F05_RS11600;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_000907242.1;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	8783	9304	.	+	.	ID=gene-C9F05_RS11605;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=C9F05_RS11605;old_locus_tag=C9F05_11935
NZ_PYKE01000167.1	Protein Homology	CDS	8783	9304	.	+	0	ID=cds-WP_000022510.1;Parent=gene-C9F05_RS11605;Dbxref=GenBank:WP_000022510.1;Name=WP_000022510.1;Ontology_term=GO:0006310,GO:0008821;gbkey=CDS;gene=ruvC;go_function=crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005068993.1;locus_tag=C9F05_RS11605;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_000022510.1;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	9335	10831	.	+	.	ID=gene-C9F05_RS11610;Name=C9F05_RS11610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11610;old_locus_tag=C9F05_11940
NZ_PYKE01000167.1	Protein Homology	CDS	9335	10831	.	+	0	ID=cds-WP_135370295.1;Parent=gene-C9F05_RS11610;Dbxref=GenBank:WP_135370295.1;Name=WP_135370295.1;Ontology_term=GO:0006817,GO:0022857,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=transmembrane transporter activity|0022857||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000974705.1;locus_tag=C9F05_RS11610;product=PstS family phosphate ABC transporter substrate-binding protein;protein_id=WP_135370295.1;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	10931	11527	.	-	.	ID=gene-C9F05_RS11615;Name=C9F05_RS11615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11615;old_locus_tag=C9F05_11945
NZ_PYKE01000167.1	Protein Homology	CDS	10931	11527	.	-	0	ID=cds-WP_079973237.1;Parent=gene-C9F05_RS11615;Dbxref=GenBank:WP_079973237.1;Name=WP_079973237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000716751.1;locus_tag=C9F05_RS11615;product=YebB family permuted papain-like enzyme;protein_id=WP_079973237.1;transl_table=11
NZ_PYKE01000167.1	RefSeq	gene	12154	13050	.	-	.	ID=gene-C9F05_RS11625;Name=C9F05_RS11625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11625;old_locus_tag=C9F05_11955
NZ_PYKE01000167.1	Protein Homology	CDS	12154	13050	.	-	0	ID=cds-WP_010989032.1;Parent=gene-C9F05_RS11625;Dbxref=GenBank:WP_010989032.1;Name=WP_010989032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460853.1;locus_tag=C9F05_RS11625;product=DUF4034 domain-containing protein;protein_id=WP_010989032.1;transl_table=11
##sequence-region NZ_PYKE01000013.1 1 12957
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000013.1	RefSeq	region	1	12957	.	+	.	ID=NZ_PYKE01000013.1:1..12957;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000013.1	RefSeq	gene	123	238	.	+	.	ID=gene-C9F05_RS00615;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9F05_RS00615;old_locus_tag=C9F05_00630
NZ_PYKE01000013.1	cmsearch	rRNA	123	238	.	+	.	ID=rna-C9F05_RS00615;Parent=gene-C9F05_RS00615;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS00615;product=5S ribosomal RNA
NZ_PYKE01000013.1	cmsearch	exon	123	238	.	+	.	ID=exon-C9F05_RS00615-1;Parent=rna-C9F05_RS00615;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS00615;product=5S ribosomal RNA
NZ_PYKE01000013.1	RefSeq	gene	758	1744	.	+	.	ID=gene-C9F05_RS00620;Name=C9F05_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00620;old_locus_tag=C9F05_00635
NZ_PYKE01000013.1	Protein Homology	CDS	758	1744	.	+	0	ID=cds-WP_135369929.1;Parent=gene-C9F05_RS00620;Dbxref=GenBank:WP_135369929.1;Name=WP_135369929.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000337539.1;locus_tag=C9F05_RS00620;product=IS110 family transposase;protein_id=WP_135369929.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	1882	2337	.	+	.	ID=gene-C9F05_RS00625;Name=C9F05_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00625;old_locus_tag=C9F05_00640
NZ_PYKE01000013.1	Protein Homology	CDS	1882	2337	.	+	0	ID=cds-WP_135369930.1;Parent=gene-C9F05_RS00625;Dbxref=GenBank:WP_135369930.1;Name=WP_135369930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461590.1;locus_tag=C9F05_RS00625;product=DUF4385 domain-containing protein;protein_id=WP_135369930.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	2441	3742	.	+	.	ID=gene-C9F05_RS00630;Name=C9F05_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00630;old_locus_tag=C9F05_00645
NZ_PYKE01000013.1	Protein Homology	CDS	2441	3742	.	+	0	ID=cds-WP_000807818.1;Parent=gene-C9F05_RS00630;Dbxref=GenBank:WP_000807818.1;Name=WP_000807818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461589.1;locus_tag=C9F05_RS00630;product=MFS transporter;protein_id=WP_000807818.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	3739	4062	.	-	.	ID=gene-C9F05_RS00635;Name=C9F05_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00635;old_locus_tag=C9F05_00650
NZ_PYKE01000013.1	Protein Homology	CDS	3739	4062	.	-	0	ID=cds-WP_001264478.1;Parent=gene-C9F05_RS00635;Dbxref=GenBank:WP_001264478.1;Name=WP_001264478.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461588.1;locus_tag=C9F05_RS00635;product=YfiM family lipoprotein;protein_id=WP_001264478.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	4107	5462	.	-	.	ID=gene-C9F05_RS00640;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=C9F05_RS00640;old_locus_tag=C9F05_00655
NZ_PYKE01000013.1	Protein Homology	CDS	4107	5462	.	-	0	ID=cds-WP_000949286.1;Parent=gene-C9F05_RS00640;Dbxref=GenBank:WP_000949286.1;Name=WP_000949286.1;Ontology_term=GO:0032049,GO:0008444;gbkey=CDS;gene=pssA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121216.1;locus_tag=C9F05_RS00640;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_000949286.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	5577	8237	.	-	.	ID=gene-C9F05_RS00645;Name=pat;gbkey=Gene;gene=pat;gene_biotype=protein_coding;locus_tag=C9F05_RS00645;old_locus_tag=C9F05_00660
NZ_PYKE01000013.1	Protein Homology	CDS	5577	8237	.	-	0	ID=cds-WP_000082643.1;Parent=gene-C9F05_RS00645;Dbxref=GenBank:WP_000082643.1;Name=WP_000082643.1;gbkey=CDS;gene=pat;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461586.1;locus_tag=C9F05_RS00645;product=protein lysine acetyltransferase;protein_id=WP_000082643.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	8291	8971	.	-	.	ID=gene-C9F05_RS00650;Name=tapT;gbkey=Gene;gene=tapT;gene_biotype=protein_coding;gene_synonym=tuaA,yfiP;locus_tag=C9F05_RS00650;old_locus_tag=C9F05_00665
NZ_PYKE01000013.1	Protein Homology	CDS	8291	8971	.	-	0	ID=cds-WP_000183647.1;Parent=gene-C9F05_RS00650;Dbxref=GenBank:WP_000183647.1;Name=WP_000183647.1;gbkey=CDS;gene=tapT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461585.1;locus_tag=C9F05_RS00650;product=tRNA-uridine aminocarboxypropyltransferase;protein_id=WP_000183647.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	9044	9463	.	-	.	ID=gene-C9F05_RS00655;Name=trxC;gbkey=Gene;gene=trxC;gene_biotype=protein_coding;locus_tag=C9F05_RS00655;old_locus_tag=C9F05_00670
NZ_PYKE01000013.1	Protein Homology	CDS	9044	9463	.	-	0	ID=cds-WP_001098732.1;Parent=gene-C9F05_RS00655;Dbxref=GenBank:WP_001098732.1;Name=WP_001098732.1;Ontology_term=GO:0015035;gbkey=CDS;gene=trxC;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461584.1;locus_tag=C9F05_RS00655;product=thioredoxin TrxC;protein_id=WP_001098732.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	9667	10704	.	+	.	ID=gene-C9F05_RS00660;Name=C9F05_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00660;old_locus_tag=C9F05_00675
NZ_PYKE01000013.1	Protein Homology	CDS	9667	10704	.	+	0	ID=cds-WP_135369931.1;Parent=gene-C9F05_RS00660;Dbxref=GenBank:WP_135369931.1;Name=WP_135369931.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461583.1;locus_tag=C9F05_RS00660;product=tRNA/rRNA methyltransferase;protein_id=WP_135369931.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	10820	11509	.	-	.	ID=gene-C9F05_RS00665;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=C9F05_RS00665;old_locus_tag=C9F05_00680
NZ_PYKE01000013.1	Protein Homology	CDS	10820	11509	.	-	0	ID=cds-WP_000179978.1;Parent=gene-C9F05_RS00665;Dbxref=GenBank:WP_000179978.1;Name=WP_000179978.1;Ontology_term=GO:0006284,GO:0004844,GO:0016799;gbkey=CDS;gene=ung;go_function=uracil DNA N-glycosylase activity|0004844||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461582.1;locus_tag=C9F05_RS00665;product=uracil-DNA glycosylase;protein_id=WP_000179978.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	11828	12211	.	+	.	ID=gene-C9F05_RS00670;Name=grcA;gbkey=Gene;gene=grcA;gene_biotype=protein_coding;locus_tag=C9F05_RS00670;old_locus_tag=C9F05_00685
NZ_PYKE01000013.1	Protein Homology	CDS	11828	12211	.	+	0	ID=cds-WP_000627811.1;Parent=gene-C9F05_RS00670;Dbxref=GenBank:WP_000627811.1;Name=WP_000627811.1;Ontology_term=GO:0003824;gbkey=CDS;gene=grcA;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007728348.1;locus_tag=C9F05_RS00670;product=autonomous glycyl radical cofactor GrcA;protein_id=WP_000627811.1;transl_table=11
NZ_PYKE01000013.1	RefSeq	gene	12273	12860	.	-	.	ID=gene-C9F05_RS00675;Name=eamB;gbkey=Gene;gene=eamB;gene_biotype=protein_coding;locus_tag=C9F05_RS00675;old_locus_tag=C9F05_00690
NZ_PYKE01000013.1	Protein Homology	CDS	12273	12860	.	-	0	ID=cds-WP_000188414.1;Parent=gene-C9F05_RS00675;Dbxref=GenBank:WP_000188414.1;Name=WP_000188414.1;gbkey=CDS;gene=eamB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461580.1;locus_tag=C9F05_RS00675;product=cysteine/O-acetylserine transporter;protein_id=WP_000188414.1;transl_table=11
##sequence-region NZ_PYKE01000127.1 1 12824
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000127.1	RefSeq	region	1	12824	.	+	.	ID=NZ_PYKE01000127.1:1..12824;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000127.1	RefSeq	gene	1	122	.	+	.	ID=gene-C9F05_RS24135;Name=C9F05_RS24135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24135;partial=true;start_range=.,1
NZ_PYKE01000127.1	Protein Homology	CDS	1	122	.	+	2	ID=cds-WP_426457366.1;Parent=gene-C9F05_RS24135;Dbxref=GenBank:WP_426457366.1;Name=WP_426457366.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004920270.1;locus_tag=C9F05_RS24135;partial=true;product=hypothetical protein;protein_id=WP_426457366.1;start_range=.,1;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	304	1668	.	+	.	ID=gene-C9F05_RS09185;Name=rhlE;gbkey=Gene;gene=rhlE;gene_biotype=protein_coding;locus_tag=C9F05_RS09185;old_locus_tag=C9F05_09430
NZ_PYKE01000127.1	Protein Homology	CDS	304	1668	.	+	0	ID=cds-WP_000007059.1;Parent=gene-C9F05_RS09185;Dbxref=GenBank:WP_000007059.1;Name=WP_000007059.1;Ontology_term=GO:0003724;gbkey=CDS;gene=rhlE;go_function=RNA helicase activity|0003724||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459798.1;locus_tag=C9F05_RS09185;product=ATP-dependent RNA helicase RhlE;protein_id=WP_000007059.1;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	1876	4020	.	+	.	ID=gene-C9F05_RS09190;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;locus_tag=C9F05_RS09190;old_locus_tag=C9F05_09435
NZ_PYKE01000127.1	Protein Homology	CDS	1876	4020	.	+	0	ID=cds-WP_001218630.1;Parent=gene-C9F05_RS09190;Dbxref=GenBank:WP_001218630.1;Name=WP_001218630.1;Ontology_term=GO:0006139,GO:0003677,GO:0003678,GO:0005524,GO:0016818;gbkey=CDS;gene=dinG;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459799.1;locus_tag=C9F05_RS09190;product=ATP-dependent DNA helicase DinG;protein_id=WP_001218630.1;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	4050	5024	.	+	.	ID=gene-C9F05_RS09195;Name=ybiB;gbkey=Gene;gene=ybiB;gene_biotype=protein_coding;locus_tag=C9F05_RS09195;old_locus_tag=C9F05_09440
NZ_PYKE01000127.1	Protein Homology	CDS	4050	5024	.	+	0	ID=cds-WP_080068186.1;Parent=gene-C9F05_RS09195;Dbxref=GenBank:WP_080068186.1;Name=WP_080068186.1;gbkey=CDS;gene=ybiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459800.1;locus_tag=C9F05_RS09195;product=DNA-binding protein YbiB;protein_id=WP_080068186.1;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	5180	5440	.	-	.	ID=gene-C9F05_RS09200;Name=ybiJ;gbkey=Gene;gene=ybiJ;gene_biotype=protein_coding;locus_tag=C9F05_RS09200;old_locus_tag=C9F05_09445
NZ_PYKE01000127.1	Protein Homology	CDS	5180	5440	.	-	0	ID=cds-WP_000849089.1;Parent=gene-C9F05_RS09200;Dbxref=GenBank:WP_000849089.1;Name=WP_000849089.1;gbkey=CDS;gene=ybiJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459801.1;locus_tag=C9F05_RS09200;product=DUF1471 family protein YbiJ;protein_id=WP_000849089.1;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	5725	5991	.	-	.	ID=gene-C9F05_RS09205;Name=C9F05_RS09205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09205;old_locus_tag=C9F05_09450
NZ_PYKE01000127.1	Protein Homology	CDS	5725	5991	.	-	0	ID=cds-WP_000146330.1;Parent=gene-C9F05_RS09205;Dbxref=GenBank:WP_000146330.1;Name=WP_000146330.1;Ontology_term=GO:0008270;gbkey=CDS;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459802.1;locus_tag=C9F05_RS09205;product=DksA/TraR family C4-type zinc finger protein;protein_id=WP_000146330.1;transl_table=11
NZ_PYKE01000127.1	RefSeq	pseudogene	6196	7121	.	+	.	ID=gene-C9F05_RS09210;Name=rlmF;gbkey=Gene;gene=rlmF;gene_biotype=pseudogene;locus_tag=C9F05_RS09210;old_locus_tag=C9F05_09455;pseudo=true
NZ_PYKE01000127.1	Protein Homology	CDS	6196	7121	.	+	0	ID=cds-C9F05_RS09210;Parent=gene-C9F05_RS09210;Note=frameshifted;Ontology_term=GO:0006364,GO:0008988;gbkey=CDS;gene=rlmF;go_function=rRNA (adenine-N6-)-methyltransferase activity|0008988||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459803.1;locus_tag=C9F05_RS09210;product=23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF;pseudo=true;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	7118	9340	.	-	.	ID=gene-C9F05_RS09215;Name=ybiO;gbkey=Gene;gene=ybiO;gene_biotype=protein_coding;locus_tag=C9F05_RS09215;old_locus_tag=C9F05_09460
NZ_PYKE01000127.1	Protein Homology	CDS	7118	9340	.	-	0	ID=cds-WP_023197983.1;Parent=gene-C9F05_RS09215;Dbxref=GenBank:WP_023197983.1;Name=WP_023197983.1;Ontology_term=GO:0055085;gbkey=CDS;gene=ybiO;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459804.1;locus_tag=C9F05_RS09215;product=mechanosensitive channel protein;protein_id=WP_023197983.1;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	9459	10181	.	-	.	ID=gene-C9F05_RS09220;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=C9F05_RS09220;old_locus_tag=C9F05_09465
NZ_PYKE01000127.1	Protein Homology	CDS	9459	10181	.	-	0	ID=cds-WP_000569093.1;Parent=gene-C9F05_RS09220;Dbxref=GenBank:WP_000569093.1;Name=WP_000569093.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424;gbkey=CDS;gene=glnQ;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000569103.1;locus_tag=C9F05_RS09220;product=glutamine ABC transporter ATP-binding protein GlnQ;protein_id=WP_000569093.1;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	10178	10837	.	-	.	ID=gene-C9F05_RS09225;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=C9F05_RS09225;old_locus_tag=C9F05_09470
NZ_PYKE01000127.1	Protein Homology	CDS	10178	10837	.	-	0	ID=cds-WP_001159076.1;Parent=gene-C9F05_RS09225;Dbxref=GenBank:WP_001159076.1;Name=WP_001159076.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=glnP;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015367581.1;locus_tag=C9F05_RS09225;product=glutamine ABC transporter permease GlnP;protein_id=WP_001159076.1;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	10983	11729	.	-	.	ID=gene-C9F05_RS09230;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=C9F05_RS09230;old_locus_tag=C9F05_09475
NZ_PYKE01000127.1	Protein Homology	CDS	10983	11729	.	-	0	ID=cds-WP_000838671.1;Parent=gene-C9F05_RS09230;Dbxref=GenBank:WP_000838671.1;Name=WP_000838671.1;Ontology_term=GO:1903803,GO:0015599,GO:0043190;gbkey=CDS;gene=glnH;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled L-glutamine transmembrane transporter activity|0015599||IEA;go_process=L-glutamine import across plasma membrane|1903803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123681.1;locus_tag=C9F05_RS09230;product=glutamine ABC transporter substrate-binding protein GlnH;protein_id=WP_000838671.1;transl_table=11
NZ_PYKE01000127.1	RefSeq	gene	12206	12709	.	-	.	ID=gene-C9F05_RS09235;Name=dps;gbkey=Gene;gene=dps;gene_biotype=protein_coding;gene_synonym=pexB;locus_tag=C9F05_RS09235;old_locus_tag=C9F05_09480
NZ_PYKE01000127.1	Protein Homology	CDS	12206	12709	.	-	0	ID=cds-WP_000100805.1;Parent=gene-C9F05_RS09235;Dbxref=GenBank:WP_000100805.1;Name=WP_000100805.1;Ontology_term=GO:0016722;gbkey=CDS;gene=dps;go_function=oxidoreductase activity%2C acting on metal ions|0016722||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001730644.1;locus_tag=C9F05_RS09235;product=DNA starvation/stationary phase protection protein Dps;protein_id=WP_000100805.1;transl_table=11
##sequence-region NZ_PYKE01000065.1 1 12781
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000065.1	RefSeq	region	1	12781	.	+	.	ID=NZ_PYKE01000065.1:1..12781;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000065.1	RefSeq	gene	137	799	.	+	.	ID=gene-C9F05_RS04045;Name=envR;gbkey=Gene;gene=envR;gene_biotype=protein_coding;locus_tag=C9F05_RS04045;old_locus_tag=C9F05_04115
NZ_PYKE01000065.1	Protein Homology	CDS	137	799	.	+	0	ID=cds-WP_001085721.1;Parent=gene-C9F05_RS04045;Dbxref=GenBank:WP_001085721.1;Name=WP_001085721.1;gbkey=CDS;gene=envR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462299.1;locus_tag=C9F05_RS04045;product=acrEF/envCD operon transcriptional regulator;protein_id=WP_001085721.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	802	2901	.	-	.	ID=gene-C9F05_RS04050;Name=C9F05_RS04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04050;old_locus_tag=C9F05_04120
NZ_PYKE01000065.1	Protein Homology	CDS	802	2901	.	-	0	ID=cds-WP_080078167.1;Parent=gene-C9F05_RS04050;Dbxref=GenBank:WP_080078167.1;Name=WP_080078167.1;Ontology_term=GO:0005525,GO:0046872,GO:0052621,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA,cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462298.1;locus_tag=C9F05_RS04050;product=putative bifunctional diguanylate cyclase/phosphodiesterase;protein_id=WP_080078167.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	3052	3216	.	-	.	ID=gene-C9F05_RS04055;Name=C9F05_RS04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04055;old_locus_tag=C9F05_04125
NZ_PYKE01000065.1	Protein Homology	CDS	3052	3216	.	-	0	ID=cds-WP_000620015.1;Parent=gene-C9F05_RS04055;Dbxref=GenBank:WP_000620015.1;Name=WP_000620015.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462297.1;locus_tag=C9F05_RS04055;product=DUF2556 family protein;protein_id=WP_000620015.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	3299	4183	.	-	.	ID=gene-C9F05_RS04060;Name=yhdJ;gbkey=Gene;gene=yhdJ;gene_biotype=protein_coding;locus_tag=C9F05_RS04060;old_locus_tag=C9F05_04130
NZ_PYKE01000065.1	Protein Homology	CDS	3299	4183	.	-	0	ID=cds-WP_000642611.1;Parent=gene-C9F05_RS04060;Dbxref=GenBank:WP_000642611.1;Name=WP_000642611.1;Ontology_term=GO:0003677,GO:0008170;gbkey=CDS;gene=yhdJ;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462296.1;locus_tag=C9F05_RS04060;product=adenine-specific DNA-methyltransferase;protein_id=WP_000642611.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	4269	4565	.	-	.	ID=gene-C9F05_RS04065;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=C9F05_RS04065;old_locus_tag=C9F05_04135
NZ_PYKE01000065.1	Protein Homology	CDS	4269	4565	.	-	0	ID=cds-WP_000462905.1;Parent=gene-C9F05_RS04065;Dbxref=GenBank:WP_000462905.1;Name=WP_000462905.1;gbkey=CDS;gene=fis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001465625.1;locus_tag=C9F05_RS04065;product=DNA-binding transcriptional regulator Fis;protein_id=WP_000462905.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	4591	5556	.	-	.	ID=gene-C9F05_RS04070;Name=dusB;gbkey=Gene;gene=dusB;gene_biotype=protein_coding;locus_tag=C9F05_RS04070;old_locus_tag=C9F05_04140
NZ_PYKE01000065.1	Protein Homology	CDS	4591	5556	.	-	0	ID=cds-WP_001219664.1;Parent=gene-C9F05_RS04070;Dbxref=GenBank:WP_001219664.1;Name=WP_001219664.1;Ontology_term=GO:0008033,GO:0017150,GO:0050660;gbkey=CDS;gene=dusB;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785970.1;locus_tag=C9F05_RS04070;product=tRNA dihydrouridine synthase DusB;protein_id=WP_001219664.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	6218	7099	.	-	.	ID=gene-C9F05_RS04080;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=C9F05_RS04080;old_locus_tag=C9F05_04145
NZ_PYKE01000065.1	Protein Homology	CDS	6218	7099	.	-	0	ID=cds-WP_001145849.1;Parent=gene-C9F05_RS04080;Dbxref=GenBank:WP_001145849.1;Name=WP_001145849.1;Ontology_term=GO:0036211,GO:0008757;gbkey=CDS;gene=prmA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462293.1;locus_tag=C9F05_RS04080;product=50S ribosomal protein L11 methyltransferase;protein_id=WP_001145849.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	7111	8562	.	-	.	ID=gene-C9F05_RS04085;Name=panF;gbkey=Gene;gene=panF;gene_biotype=protein_coding;locus_tag=C9F05_RS04085;old_locus_tag=C9F05_04150
NZ_PYKE01000065.1	Protein Homology	CDS	7111	8562	.	-	0	ID=cds-WP_050067931.1;Parent=gene-C9F05_RS04085;Dbxref=GenBank:WP_050067931.1;Name=WP_050067931.1;Ontology_term=GO:0015887,GO:0036376,GO:0015081,GO:0015233,GO:0016020;gbkey=CDS;gene=panF;go_component=membrane|0016020||IEA;go_function=sodium ion transmembrane transporter activity|0015081||IEA,pantothenate transmembrane transporter activity|0015233||IEA;go_process=pantothenate transmembrane transport|0015887||IEA,sodium ion export across plasma membrane|0036376||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462292.1;locus_tag=C9F05_RS04085;product=sodium/pantothenate symporter;protein_id=WP_050067931.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	8552	8794	.	-	.	ID=gene-C9F05_RS04090;Name=C9F05_RS04090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04090;old_locus_tag=C9F05_04155
NZ_PYKE01000065.1	Protein Homology	CDS	8552	8794	.	-	0	ID=cds-WP_000340016.1;Parent=gene-C9F05_RS04090;Dbxref=GenBank:WP_000340016.1;Name=WP_000340016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462291.1;locus_tag=C9F05_RS04090;product=YhdT family protein;protein_id=WP_000340016.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	8903	10252	.	-	.	ID=gene-C9F05_RS04095;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=C9F05_RS04095;old_locus_tag=C9F05_04160
NZ_PYKE01000065.1	Protein Homology	CDS	8903	10252	.	-	0	ID=cds-WP_000884627.1;Parent=gene-C9F05_RS04095;Dbxref=GenBank:WP_000884627.1;Name=WP_000884627.1;Ontology_term=GO:0004075,GO:0016874,GO:0009317;gbkey=CDS;gene=accC;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=biotin carboxylase activity|0004075||IEA,ligase activity|0016874||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009483995.1;locus_tag=C9F05_RS04095;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_000884627.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	10263	10733	.	-	.	ID=gene-C9F05_RS04100;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=C9F05_RS04100;old_locus_tag=C9F05_04165
NZ_PYKE01000065.1	Protein Homology	CDS	10263	10733	.	-	0	ID=cds-WP_000354626.1;Parent=gene-C9F05_RS04100;Dbxref=GenBank:WP_000354626.1;Name=WP_000354626.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accB;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462289.1;locus_tag=C9F05_RS04100;product=acetyl-CoA carboxylase biotin carboxyl carrier protein;protein_id=WP_000354626.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	11126	11725	.	-	.	ID=gene-C9F05_RS04105;Name=msrQ;gbkey=Gene;gene=msrQ;gene_biotype=protein_coding;locus_tag=C9F05_RS04105;old_locus_tag=C9F05_04170
NZ_PYKE01000065.1	Protein Homology	CDS	11126	11725	.	-	0	ID=cds-WP_001240053.1;Parent=gene-C9F05_RS04105;Dbxref=GenBank:WP_001240053.1;Name=WP_001240053.1;gbkey=CDS;gene=msrQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462288.1;locus_tag=C9F05_RS04105;product=protein-methionine-sulfoxide reductase heme-binding subunit MsrQ;protein_id=WP_001240053.1;transl_table=11
NZ_PYKE01000065.1	RefSeq	gene	11726	12730	.	-	.	ID=gene-C9F05_RS04110;Name=msrP;gbkey=Gene;gene=msrP;gene_biotype=protein_coding;locus_tag=C9F05_RS04110;old_locus_tag=C9F05_04175
NZ_PYKE01000065.1	Protein Homology	CDS	11726	12730	.	-	0	ID=cds-WP_000723876.1;Parent=gene-C9F05_RS04110;Dbxref=GenBank:WP_000723876.1;Name=WP_000723876.1;Ontology_term=GO:0030091,GO:0016667,GO:0043546;gbkey=CDS;gene=msrP;go_function=oxidoreductase activity%2C acting on a sulfur group of donors|0016667||IEA,molybdopterin cofactor binding|0043546||IEA;go_process=protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462287.1;locus_tag=C9F05_RS04110;product=protein-methionine-sulfoxide reductase catalytic subunit MsrP;protein_id=WP_000723876.1;transl_table=11
##sequence-region NZ_PYKE01000058.1 1 12757
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000058.1	RefSeq	region	1	12757	.	+	.	ID=NZ_PYKE01000058.1:1..12757;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000058.1	RefSeq	gene	156	1382	.	+	.	ID=gene-C9F05_RS03470;Name=C9F05_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03470;old_locus_tag=C9F05_03530
NZ_PYKE01000058.1	Protein Homology	CDS	156	1382	.	+	0	ID=cds-WP_135370033.1;Parent=gene-C9F05_RS03470;Dbxref=GenBank:WP_135370033.1;Name=WP_135370033.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462711.1;locus_tag=C9F05_RS03470;product=DUF3748 domain-containing protein;protein_id=WP_135370033.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	1384	1716	.	-	.	ID=gene-C9F05_RS03475;Name=C9F05_RS03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03475;old_locus_tag=C9F05_03535
NZ_PYKE01000058.1	Protein Homology	CDS	1384	1716	.	-	0	ID=cds-WP_001675643.1;Parent=gene-C9F05_RS03475;Dbxref=GenBank:WP_001675643.1;Name=WP_001675643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675643.1;locus_tag=C9F05_RS03475;product=YceK/YidQ family lipoprotein;protein_id=WP_001675643.1;transl_table=11
NZ_PYKE01000058.1	cmsearch	sequence_feature	1959	2032	.	+	.	ID=id-NZ_PYKE01000058.1:1959..2032;Dbxref=RFAM:RF01832;Note=ROSE (Repression Of Heat Shock gene Expression) occurs in the 5'-region of heat shock genes and acts as an RNA thermometer to modulate expression.;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYKE01000058.1	RefSeq	gene	2026	2439	.	+	.	ID=gene-C9F05_RS03480;Name=ibpA;gbkey=Gene;gene=ibpA;gene_biotype=protein_coding;locus_tag=C9F05_RS03480;old_locus_tag=C9F05_03540
NZ_PYKE01000058.1	Protein Homology	CDS	2026	2439	.	+	0	ID=cds-WP_001532742.1;Parent=gene-C9F05_RS03480;Dbxref=GenBank:WP_001532742.1;Name=WP_001532742.1;Ontology_term=GO:0006950,GO:0051082;gbkey=CDS;gene=ibpA;go_function=unfolded protein binding|0051082||IEA;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006687722.1;locus_tag=C9F05_RS03480;product=small heat shock chaperone IbpA;protein_id=WP_001532742.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	2549	2977	.	+	.	ID=gene-C9F05_RS03485;Name=ibpB;gbkey=Gene;gene=ibpB;gene_biotype=protein_coding;locus_tag=C9F05_RS03485;old_locus_tag=C9F05_03545
NZ_PYKE01000058.1	Protein Homology	CDS	2549	2977	.	+	0	ID=cds-WP_001246919.1;Parent=gene-C9F05_RS03485;Dbxref=GenBank:WP_001246919.1;Name=WP_001246919.1;Ontology_term=GO:0006950,GO:0051082;gbkey=CDS;gene=ibpB;go_function=unfolded protein binding|0051082||IEA;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462708.3;locus_tag=C9F05_RS03485;product=small heat shock chaperone IbpB;protein_id=WP_001246919.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	3166	4827	.	+	.	ID=gene-C9F05_RS03490;Name=C9F05_RS03490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03490;old_locus_tag=C9F05_03550
NZ_PYKE01000058.1	Protein Homology	CDS	3166	4827	.	+	0	ID=cds-WP_001279781.1;Parent=gene-C9F05_RS03490;Dbxref=GenBank:WP_001279781.1;Name=WP_001279781.1;Ontology_term=GO:0006813,GO:0008324;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462707.1;locus_tag=C9F05_RS03490;product=putative transporter;protein_id=WP_001279781.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	5271	5618	.	+	.	ID=gene-C9F05_RS03495;Name=C9F05_RS03495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03495;old_locus_tag=C9F05_03555
NZ_PYKE01000058.1	Protein Homology	CDS	5271	5618	.	+	0	ID=cds-WP_000703964.1;Parent=gene-C9F05_RS03495;Dbxref=GenBank:WP_000703964.1;Name=WP_000703964.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462706.1;locus_tag=C9F05_RS03495;product=YidH family protein;protein_id=WP_000703964.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	5608	5970	.	+	.	ID=gene-C9F05_RS03500;Name=C9F05_RS03500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03500;old_locus_tag=C9F05_03560
NZ_PYKE01000058.1	Protein Homology	CDS	5608	5970	.	+	0	ID=cds-WP_001113454.1;Parent=gene-C9F05_RS03500;Dbxref=GenBank:WP_001113454.1;Name=WP_001113454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462705.1;locus_tag=C9F05_RS03500;product=DUF202 domain-containing protein;protein_id=WP_001113454.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	5967	6497	.	+	.	ID=gene-C9F05_RS03505;Name=C9F05_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03505;old_locus_tag=C9F05_03565
NZ_PYKE01000058.1	Protein Homology	CDS	5967	6497	.	+	0	ID=cds-WP_000147830.1;Parent=gene-C9F05_RS03505;Dbxref=GenBank:WP_000147830.1;Name=WP_000147830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462704.1;locus_tag=C9F05_RS03505;product=radical SAM protein;protein_id=WP_000147830.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	6579	7901	.	-	.	ID=gene-C9F05_RS03510;Name=dsdA;gbkey=Gene;gene=dsdA;gene_biotype=protein_coding;locus_tag=C9F05_RS03510;old_locus_tag=C9F05_03570
NZ_PYKE01000058.1	Protein Homology	CDS	6579	7901	.	-	0	ID=cds-WP_023217888.1;Parent=gene-C9F05_RS03510;Dbxref=GenBank:WP_023217888.1;Name=WP_023217888.1;Ontology_term=GO:0046416,GO:0008721,GO:0030170;gbkey=CDS;gene=dsdA;go_function=D-serine ammonia-lyase activity|0008721||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=D-amino acid metabolic process|0046416||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462703.1;locus_tag=C9F05_RS03510;product=D-serine ammonia-lyase;protein_id=WP_023217888.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	7919	9256	.	-	.	ID=gene-C9F05_RS03515;Name=dsdX;gbkey=Gene;gene=dsdX;gene_biotype=protein_coding;locus_tag=C9F05_RS03515;old_locus_tag=C9F05_03575
NZ_PYKE01000058.1	Protein Homology	CDS	7919	9256	.	-	0	ID=cds-WP_000543314.1;Parent=gene-C9F05_RS03515;Dbxref=GenBank:WP_000543314.1;Name=WP_000543314.1;Ontology_term=GO:0035429,GO:0015128,GO:0016020;gbkey=CDS;gene=dsdX;go_component=membrane|0016020||IEA;go_function=gluconate transmembrane transporter activity|0015128||IEA;go_process=gluconate transmembrane transport|0035429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462702.1;locus_tag=C9F05_RS03515;product=D-serine transporter DsdX;protein_id=WP_000543314.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	9482	10405	.	+	.	ID=gene-C9F05_RS03520;Name=dsdC;gbkey=Gene;gene=dsdC;gene_biotype=protein_coding;locus_tag=C9F05_RS03520;old_locus_tag=C9F05_03580
NZ_PYKE01000058.1	Protein Homology	CDS	9482	10405	.	+	0	ID=cds-WP_001541637.1;Parent=gene-C9F05_RS03520;Dbxref=GenBank:WP_001541637.1;Name=WP_001541637.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=dsdC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462701.1;locus_tag=C9F05_RS03520;product=DNA-binding transcriptional regulator DsdC;protein_id=WP_001541637.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	10469	11554	.	+	.	ID=gene-C9F05_RS03525;Name=C9F05_RS03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03525;old_locus_tag=C9F05_03585
NZ_PYKE01000058.1	Protein Homology	CDS	10469	11554	.	+	0	ID=cds-WP_135370034.1;Parent=gene-C9F05_RS03525;Dbxref=GenBank:WP_135370034.1;Name=WP_135370034.1;Ontology_term=GO:0000272,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462700.1;locus_tag=C9F05_RS03525;product=cellulase family glycosylhydrolase;protein_id=WP_135370034.1;transl_table=11
NZ_PYKE01000058.1	RefSeq	gene	11481	12665	.	-	.	ID=gene-C9F05_RS03530;Name=emrD;gbkey=Gene;gene=emrD;gene_biotype=protein_coding;locus_tag=C9F05_RS03530;old_locus_tag=C9F05_03590
NZ_PYKE01000058.1	Protein Homology	CDS	11481	12665	.	-	0	ID=cds-WP_000828737.1;Parent=gene-C9F05_RS03530;Dbxref=GenBank:WP_000828737.1;Name=WP_000828737.1;gbkey=CDS;gene=emrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462699.1;locus_tag=C9F05_RS03530;product=multidrug efflux MFS transporter EmrD;protein_id=WP_000828737.1;transl_table=11
##sequence-region NZ_PYKE01000164.1 1 12730
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000164.1	RefSeq	region	1	12730	.	+	.	ID=NZ_PYKE01000164.1:1..12730;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000164.1	RefSeq	gene	562	3231	.	+	.	ID=gene-C9F05_RS11515;Name=rcsD;gbkey=Gene;gene=rcsD;gene_biotype=protein_coding;locus_tag=C9F05_RS11515;old_locus_tag=C9F05_11835
NZ_PYKE01000164.1	Protein Homology	CDS	562	3231	.	+	0	ID=cds-WP_000083201.1;Parent=gene-C9F05_RS11515;Dbxref=GenBank:WP_000083201.1;Name=WP_000083201.1;Ontology_term=GO:0000160,GO:0009927,GO:0005886;gbkey=CDS;gene=rcsD;go_component=plasma membrane|0005886||IEA;go_function=histidine phosphotransfer kinase activity|0009927||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461211.1;locus_tag=C9F05_RS11515;product=phosphotransferase RcsD;protein_id=WP_000083201.1;transl_table=11
NZ_PYKE01000164.1	RefSeq	gene	3248	3898	.	+	.	ID=gene-C9F05_RS11520;Name=rcsB;gbkey=Gene;gene=rcsB;gene_biotype=protein_coding;locus_tag=C9F05_RS11520;old_locus_tag=C9F05_11840
NZ_PYKE01000164.1	Protein Homology	CDS	3248	3898	.	+	0	ID=cds-WP_001061919.1;Parent=gene-C9F05_RS11520;Dbxref=GenBank:WP_001061919.1;Name=WP_001061919.1;gbkey=CDS;gene=rcsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461212.1;locus_tag=C9F05_RS11520;product=response regulator transcription factor RcsB;protein_id=WP_001061919.1;transl_table=11
NZ_PYKE01000164.1	RefSeq	gene	4002	6848	.	-	.	ID=gene-C9F05_RS11525;Name=rcsC;gbkey=Gene;gene=rcsC;gene_biotype=protein_coding;locus_tag=C9F05_RS11525;old_locus_tag=C9F05_11845
NZ_PYKE01000164.1	Protein Homology	CDS	4002	6848	.	-	0	ID=cds-WP_000876086.1;Parent=gene-C9F05_RS11525;Dbxref=GenBank:WP_000876086.1;Name=WP_000876086.1;Ontology_term=GO:0000160,GO:0006355,GO:0018106,GO:0000155,GO:0005524,GO:0016020;gbkey=CDS;gene=rcsC;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,peptidyl-histidine phosphorylation|0018106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461213.1;locus_tag=C9F05_RS11525;product=two-component system sensor histidine kinase RcsC;protein_id=WP_000876086.1;transl_table=11
NZ_PYKE01000164.1	RefSeq	gene	6966	9602	.	-	.	ID=gene-C9F05_RS11530;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=C9F05_RS11530;old_locus_tag=C9F05_11850
NZ_PYKE01000164.1	Protein Homology	CDS	6966	9602	.	-	0	ID=cds-WP_023237365.1;Parent=gene-C9F05_RS11530;Dbxref=GenBank:WP_023237365.1;Name=WP_023237365.1;Ontology_term=GO:0006265,GO:0003916,GO:0003918,GO:0009330;gbkey=CDS;gene=gyrA;go_component=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) complex|0009330||IEA;go_function=DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461214.1;locus_tag=C9F05_RS11530;product=DNA topoisomerase (ATP-hydrolyzing) subunit A;protein_id=WP_023237365.1;transl_table=11
NZ_PYKE01000164.1	RefSeq	gene	10012	11214	.	-	.	ID=gene-C9F05_RS11535;Name=C9F05_RS11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11535;old_locus_tag=C9F05_11860
NZ_PYKE01000164.1	Protein Homology	CDS	10012	11214	.	-	0	ID=cds-WP_000705581.1;Parent=gene-C9F05_RS11535;Dbxref=GenBank:WP_000705581.1;Name=WP_000705581.1;Ontology_term=GO:0000287,GO:0003824;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461215.1;locus_tag=C9F05_RS11535;product=mandelate racemase/muconate lactonizing enzyme family protein;protein_id=WP_000705581.1;transl_table=11
NZ_PYKE01000164.1	RefSeq	gene	11229	12554	.	-	.	ID=gene-C9F05_RS11540;Name=C9F05_RS11540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11540;old_locus_tag=C9F05_11865
NZ_PYKE01000164.1	Protein Homology	CDS	11229	12554	.	-	0	ID=cds-WP_135370292.1;Parent=gene-C9F05_RS11540;Dbxref=GenBank:WP_135370292.1;Name=WP_135370292.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461216.1;locus_tag=C9F05_RS11540;product=MFS transporter;protein_id=WP_135370292.1;transl_table=11
NZ_PYKE01000164.1	RefSeq	pseudogene	12604	12730	.	+	.	ID=gene-C9F05_RS11545;Name=C9F05_RS11545;end_range=12730,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS11545;old_locus_tag=C9F05_11870;partial=true;pseudo=true
NZ_PYKE01000164.1	Protein Homology	CDS	12604	12730	.	+	0	ID=cds-C9F05_RS11545;Parent=gene-C9F05_RS11545;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=12730,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461217.3;locus_tag=C9F05_RS11545;partial=true;product=GntR family transcriptional regulator;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000340.1 1 49170
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000340.1	RefSeq	region	1	49170	.	+	.	ID=NZ_PYKE01000340.1:1..49170;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000340.1	RefSeq	gene	105	629	.	+	.	ID=gene-C9F05_RS22885;Name=lpfA;gbkey=Gene;gene=lpfA;gene_biotype=protein_coding;locus_tag=C9F05_RS22885;old_locus_tag=C9F05_23480
NZ_PYKE01000340.1	Protein Homology	CDS	105	629	.	+	0	ID=cds-WP_001519917.1;Parent=gene-C9F05_RS22885;Dbxref=GenBank:WP_001519917.1;Name=WP_001519917.1;gbkey=CDS;gene=lpfA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519917.1;locus_tag=C9F05_RS22885;product=long polar fimbria major subunit LpfA;protein_id=WP_001519917.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	714	1412	.	+	.	ID=gene-C9F05_RS22890;Name=lpfB;gbkey=Gene;gene=lpfB;gene_biotype=protein_coding;locus_tag=C9F05_RS22890;old_locus_tag=C9F05_23485
NZ_PYKE01000340.1	Protein Homology	CDS	714	1412	.	+	0	ID=cds-WP_001082123.1;Parent=gene-C9F05_RS22890;Dbxref=GenBank:WP_001082123.1;Name=WP_001082123.1;gbkey=CDS;gene=lpfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462540.1;locus_tag=C9F05_RS22890;product=long polar fimbrial chaperone LpfB;protein_id=WP_001082123.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	1435	3963	.	+	.	ID=gene-C9F05_RS22895;Name=lpfC;gbkey=Gene;gene=lpfC;gene_biotype=protein_coding;locus_tag=C9F05_RS22895;old_locus_tag=C9F05_23490
NZ_PYKE01000340.1	Protein Homology	CDS	1435	3963	.	+	0	ID=cds-WP_000220312.1;Parent=gene-C9F05_RS22895;Dbxref=GenBank:WP_000220312.1;Name=WP_000220312.1;gbkey=CDS;gene=lpfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462539.1;locus_tag=C9F05_RS22895;product=outer membrane usher protein LpfC;protein_id=WP_000220312.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	3981	5060	.	+	.	ID=gene-C9F05_RS22900;Name=lpfD;gbkey=Gene;gene=lpfD;gene_biotype=protein_coding;locus_tag=C9F05_RS22900;old_locus_tag=C9F05_23495
NZ_PYKE01000340.1	Protein Homology	CDS	3981	5060	.	+	0	ID=cds-WP_000914255.1;Parent=gene-C9F05_RS22900;Dbxref=GenBank:WP_000914255.1;Name=WP_000914255.1;gbkey=CDS;gene=lpfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462538.1;locus_tag=C9F05_RS22900;product=long polar fimbrial protein LpfD;protein_id=WP_000914255.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	5066	5593	.	+	.	ID=gene-C9F05_RS22905;Name=lpfE;gbkey=Gene;gene=lpfE;gene_biotype=protein_coding;locus_tag=C9F05_RS22905;old_locus_tag=C9F05_23500
NZ_PYKE01000340.1	Protein Homology	CDS	5066	5593	.	+	0	ID=cds-WP_000792957.1;Parent=gene-C9F05_RS22905;Dbxref=GenBank:WP_000792957.1;Name=WP_000792957.1;gbkey=CDS;gene=lpfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462537.1;locus_tag=C9F05_RS22905;product=long polar fimbrial protein LpfE;protein_id=WP_000792957.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	5811	7502	.	+	.	ID=gene-C9F05_RS22910;Name=eptB;gbkey=Gene;gene=eptB;gene_biotype=protein_coding;locus_tag=C9F05_RS22910;old_locus_tag=C9F05_23505
NZ_PYKE01000340.1	Protein Homology	CDS	5811	7502	.	+	0	ID=cds-WP_135370666.1;Parent=gene-C9F05_RS22910;Dbxref=GenBank:WP_135370666.1;Name=WP_135370666.1;Ontology_term=GO:0008484;gbkey=CDS;gene=eptB;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462536.1;locus_tag=C9F05_RS22910;product=kdo(2)-lipid A phosphoethanolamine 7''-transferase;protein_id=WP_135370666.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	7593	7669	.	+	.	ID=gene-C9F05_RS22915;Name=C9F05_RS22915;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS22915;old_locus_tag=C9F05_23510
NZ_PYKE01000340.1	tRNAscan-SE	tRNA	7593	7669	.	+	.	ID=rna-C9F05_RS22915;Parent=gene-C9F05_RS22915;anticodon=(pos:7627..7629);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS22915;product=tRNA-Pro
NZ_PYKE01000340.1	tRNAscan-SE	exon	7593	7669	.	+	.	ID=exon-C9F05_RS22915-1;Parent=rna-C9F05_RS22915;anticodon=(pos:7627..7629);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS22915;product=tRNA-Pro
NZ_PYKE01000340.1	RefSeq	gene	7704	7822	.	+	.	ID=gene-C9F05_RS22920;Name=C9F05_RS22920;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9F05_RS22920;old_locus_tag=C9F05_23515
NZ_PYKE01000340.1	cmsearch	ncRNA	7704	7822	.	+	.	ID=rna-C9F05_RS22920;Parent=gene-C9F05_RS22920;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS22920;product=RtT sRNA
NZ_PYKE01000340.1	cmsearch	exon	7704	7822	.	+	.	ID=exon-C9F05_RS22920-1;Parent=rna-C9F05_RS22920;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS22920;product=RtT sRNA
NZ_PYKE01000340.1	RefSeq	gene	7813	8820	.	-	.	ID=gene-C9F05_RS22925;Name=C9F05_RS22925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22925;old_locus_tag=C9F05_23520
NZ_PYKE01000340.1	Protein Homology	CDS	7813	8820	.	-	0	ID=cds-WP_023195897.1;Parent=gene-C9F05_RS22925;Dbxref=GenBank:WP_023195897.1;Name=WP_023195897.1;Ontology_term=GO:0006351,GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462535.1;locus_tag=C9F05_RS22925;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_023195897.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	8970	10094	.	+	.	ID=gene-C9F05_RS22930;Name=C9F05_RS22930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22930;old_locus_tag=C9F05_23525
NZ_PYKE01000340.1	Protein Homology	CDS	8970	10094	.	+	0	ID=cds-WP_000940825.1;Parent=gene-C9F05_RS22930;Dbxref=GenBank:WP_000940825.1;Name=WP_000940825.1;Ontology_term=GO:0004062;gbkey=CDS;go_function=aryl sulfotransferase activity|0004062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462534.1;locus_tag=C9F05_RS22930;product=aryl-sulfate sulfotransferase;protein_id=WP_000940825.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	10152	11477	.	+	.	ID=gene-C9F05_RS22935;Name=C9F05_RS22935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22935;old_locus_tag=C9F05_23530
NZ_PYKE01000340.1	Protein Homology	CDS	10152	11477	.	+	0	ID=cds-WP_001136080.1;Parent=gene-C9F05_RS22935;Dbxref=GenBank:WP_001136080.1;Name=WP_001136080.1;Ontology_term=GO:0015851,GO:0055085,GO:0015205,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=nucleobase transmembrane transporter activity|0015205||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleobase transport|0015851||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462533.1;locus_tag=C9F05_RS22935;product=uracil-xanthine permease family protein;protein_id=WP_001136080.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	12033	13640	.	+	.	ID=gene-C9F05_RS22940;Name=dppA;gbkey=Gene;gene=dppA;gene_biotype=protein_coding;locus_tag=C9F05_RS22940;old_locus_tag=C9F05_23535
NZ_PYKE01000340.1	Protein Homology	CDS	12033	13640	.	+	0	ID=cds-WP_000028047.1;Parent=gene-C9F05_RS22940;Dbxref=GenBank:WP_000028047.1;Name=WP_000028047.1;Ontology_term=GO:0042938,GO:0071916,GO:0030288;gbkey=CDS;gene=dppA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=dipeptide transmembrane transporter activity|0071916||IEA;go_process=dipeptide transport|0042938||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462532.1;locus_tag=C9F05_RS22940;product=dipeptide ABC transporter periplasmic-binding protein DppA;protein_id=WP_000028047.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	13797	14816	.	+	.	ID=gene-C9F05_RS22945;Name=dppB;gbkey=Gene;gene=dppB;gene_biotype=protein_coding;locus_tag=C9F05_RS22945;old_locus_tag=C9F05_23540
NZ_PYKE01000340.1	Protein Homology	CDS	13797	14816	.	+	0	ID=cds-WP_000938843.1;Parent=gene-C9F05_RS22945;Dbxref=GenBank:WP_000938843.1;Name=WP_000938843.1;gbkey=CDS;gene=dppB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133865.1;locus_tag=C9F05_RS22945;product=dipeptide ABC transporter permease DppB;protein_id=WP_000938843.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	14826	15728	.	+	.	ID=gene-C9F05_RS22950;Name=dppC;gbkey=Gene;gene=dppC;gene_biotype=protein_coding;locus_tag=C9F05_RS22950;old_locus_tag=C9F05_23545
NZ_PYKE01000340.1	Protein Homology	CDS	14826	15728	.	+	0	ID=cds-WP_000084690.1;Parent=gene-C9F05_RS22950;Dbxref=GenBank:WP_000084690.1;Name=WP_000084690.1;Ontology_term=GO:0055085;gbkey=CDS;gene=dppC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010426221.1;locus_tag=C9F05_RS22950;product=dipeptide ABC transporter permease DppC;protein_id=WP_000084690.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	15739	16722	.	+	.	ID=gene-C9F05_RS22955;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=protein_coding;locus_tag=C9F05_RS22955;old_locus_tag=C9F05_23550
NZ_PYKE01000340.1	Protein Homology	CDS	15739	16722	.	+	0	ID=cds-WP_001196509.1;Parent=gene-C9F05_RS22955;Dbxref=GenBank:WP_001196509.1;Name=WP_001196509.1;Ontology_term=GO:0015833,GO:0000166,GO:0005524;gbkey=CDS;gene=dppD;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462529.1;locus_tag=C9F05_RS22955;product=dipeptide ABC transporter ATP-binding protein;protein_id=WP_001196509.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	16719	17732	.	+	.	ID=gene-C9F05_RS22960;Name=dppF;gbkey=Gene;gene=dppF;gene_biotype=protein_coding;locus_tag=C9F05_RS22960;old_locus_tag=C9F05_23555
NZ_PYKE01000340.1	Protein Homology	CDS	16719	17732	.	+	0	ID=cds-WP_135370667.1;Parent=gene-C9F05_RS22960;Dbxref=GenBank:WP_135370667.1;Name=WP_135370667.1;gbkey=CDS;gene=dppF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462528.1;locus_tag=C9F05_RS22960;product=dipeptide ABC transporter ATP-binding subunit DppF;protein_id=WP_135370667.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	17833	19131	.	-	.	ID=gene-C9F05_RS22965;Name=C9F05_RS22965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22965;old_locus_tag=C9F05_23560
NZ_PYKE01000340.1	Protein Homology	CDS	17833	19131	.	-	0	ID=cds-WP_001150175.1;Parent=gene-C9F05_RS22965;Dbxref=GenBank:WP_001150175.1;Name=WP_001150175.1;Ontology_term=GO:0003333;gbkey=CDS;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462527.1;locus_tag=C9F05_RS22965;product=aromatic amino acid transport family protein;protein_id=WP_001150175.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	pseudogene	19249	19401	.	-	.	ID=gene-C9F05_RS23950;Name=C9F05_RS23950;end_range=19401,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23950;partial=true;pseudo=true
NZ_PYKE01000340.1	Protein Homology	CDS	19249	19401	.	-	0	ID=cds-C9F05_RS23950;Parent=gene-C9F05_RS23950;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0019346,GO:0030170;end_range=19401,.;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: protein motif:HMM:NF013237.6;locus_tag=C9F05_RS23950;partial=true;product=PLP-dependent transferase;pseudo=true;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	19774	19881	.	+	.	ID=gene-C9F05_RS22975;Name=C9F05_RS22975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22975;old_locus_tag=C9F05_23570
NZ_PYKE01000340.1	Protein Homology	CDS	19774	19881	.	+	0	ID=cds-WP_001537650.1;Parent=gene-C9F05_RS22975;Dbxref=GenBank:WP_001537650.1;Name=WP_001537650.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502657.1;locus_tag=C9F05_RS22975;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_001537650.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	19963	21642	.	-	.	ID=gene-C9F05_RS22980;Name=bcsG;gbkey=Gene;gene=bcsG;gene_biotype=protein_coding;locus_tag=C9F05_RS22980;old_locus_tag=C9F05_23575
NZ_PYKE01000340.1	Protein Homology	CDS	19963	21642	.	-	0	ID=cds-WP_000192022.1;Parent=gene-C9F05_RS22980;Dbxref=GenBank:WP_000192022.1;Name=WP_000192022.1;Ontology_term=GO:0030244;gbkey=CDS;gene=bcsG;go_process=cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462525.1;locus_tag=C9F05_RS22980;product=cellulose biosynthesis protein BcsG;protein_id=WP_000192022.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	21639	21830	.	-	.	ID=gene-C9F05_RS22985;Name=bcsF;gbkey=Gene;gene=bcsF;gene_biotype=protein_coding;locus_tag=C9F05_RS22985;old_locus_tag=C9F05_23580
NZ_PYKE01000340.1	Protein Homology	CDS	21639	21830	.	-	0	ID=cds-WP_000988321.1;Parent=gene-C9F05_RS22985;Dbxref=GenBank:WP_000988321.1;Name=WP_000988321.1;Ontology_term=GO:0052324;gbkey=CDS;gene=bcsF;go_process=plant-type cell wall cellulose biosynthetic process|0052324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462524.1;locus_tag=C9F05_RS22985;product=cellulose biosynthesis protein BcsF;protein_id=WP_000988321.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	21827	23398	.	-	.	ID=gene-C9F05_RS22990;Name=bcsE;gbkey=Gene;gene=bcsE;gene_biotype=protein_coding;locus_tag=C9F05_RS22990;old_locus_tag=C9F05_23585
NZ_PYKE01000340.1	Protein Homology	CDS	21827	23398	.	-	0	ID=cds-WP_001205767.1;Parent=gene-C9F05_RS22990;Dbxref=GenBank:WP_001205767.1;Name=WP_001205767.1;Ontology_term=GO:0035438;gbkey=CDS;gene=bcsE;go_function=cyclic-di-GMP binding|0035438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462523.1;locus_tag=C9F05_RS22990;product=cellulose biosynthesis c-di-GMP-binding protein BcsE;protein_id=WP_001205767.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	23643	23846	.	+	.	ID=gene-C9F05_RS22995;Name=bcsR;gbkey=Gene;gene=bcsR;gene_biotype=protein_coding;locus_tag=C9F05_RS22995;old_locus_tag=C9F05_23590
NZ_PYKE01000340.1	Protein Homology	CDS	23643	23846	.	+	0	ID=cds-WP_000282616.1;Parent=gene-C9F05_RS22995;Dbxref=GenBank:WP_000282616.1;Name=WP_000282616.1;gbkey=CDS;gene=bcsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462522.1;locus_tag=C9F05_RS22995;product=cellulose biosynthesis protein BcsR;protein_id=WP_000282616.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	23847	24599	.	+	.	ID=gene-C9F05_RS23000;Name=bcsQ;gbkey=Gene;gene=bcsQ;gene_biotype=protein_coding;locus_tag=C9F05_RS23000;old_locus_tag=C9F05_23595
NZ_PYKE01000340.1	Protein Homology	CDS	23847	24599	.	+	0	ID=cds-WP_000996115.1;Parent=gene-C9F05_RS23000;Dbxref=GenBank:WP_000996115.1;Name=WP_000996115.1;gbkey=CDS;gene=bcsQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462521.1;locus_tag=C9F05_RS23000;product=cellulose biosynthesis protein BcsQ;protein_id=WP_000996115.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	24596	27220	.	+	.	ID=gene-C9F05_RS23005;Name=bcsA;gbkey=Gene;gene=bcsA;gene_biotype=protein_coding;locus_tag=C9F05_RS23005;old_locus_tag=C9F05_23600
NZ_PYKE01000340.1	Protein Homology	CDS	24596	27220	.	+	0	ID=cds-WP_001275347.1;Parent=gene-C9F05_RS23005;Dbxref=GenBank:WP_001275347.1;Name=WP_001275347.1;Ontology_term=GO:0006011,GO:0030244,GO:0016760,GO:0035438,GO:0016020;gbkey=CDS;gene=bcsA;go_component=membrane|0016020||IEA;go_function=cellulose synthase (UDP-forming) activity|0016760||IEA,cyclic-di-GMP binding|0035438||IEA;go_process=UDP-alpha-D-glucose metabolic process|0006011||IEA,cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462520.1;locus_tag=C9F05_RS23005;product=UDP-forming cellulose synthase catalytic subunit;protein_id=WP_001275347.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	27231	29531	.	+	.	ID=gene-C9F05_RS23010;Name=bcsB;gbkey=Gene;gene=bcsB;gene_biotype=protein_coding;locus_tag=C9F05_RS23010;old_locus_tag=C9F05_23605
NZ_PYKE01000340.1	Protein Homology	CDS	27231	29531	.	+	0	ID=cds-WP_135370668.1;Parent=gene-C9F05_RS23010;Dbxref=GenBank:WP_135370668.1;Name=WP_135370668.1;gbkey=CDS;gene=bcsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462519.1;locus_tag=C9F05_RS23010;product=cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB;protein_id=WP_135370668.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	29535	30644	.	+	.	ID=gene-C9F05_RS23015;Name=bcsZ;gbkey=Gene;gene=bcsZ;gene_biotype=protein_coding;locus_tag=C9F05_RS23015;old_locus_tag=C9F05_23610
NZ_PYKE01000340.1	Protein Homology	CDS	29535	30644	.	+	0	ID=cds-WP_000988802.1;Parent=gene-C9F05_RS23015;Dbxref=GenBank:WP_000988802.1;Name=WP_000988802.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=bcsZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462518.1;locus_tag=C9F05_RS23015;product=cellulose synthase complex periplasmic endoglucanase BcsZ;protein_id=WP_000988802.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	30626	34168	.	+	.	ID=gene-C9F05_RS23020;Name=bcsC;gbkey=Gene;gene=bcsC;gene_biotype=protein_coding;locus_tag=C9F05_RS23020;old_locus_tag=C9F05_23615
NZ_PYKE01000340.1	Protein Homology	CDS	30626	34168	.	+	0	ID=cds-WP_135370669.1;Parent=gene-C9F05_RS23020;Dbxref=GenBank:WP_135370669.1;Name=WP_135370669.1;Ontology_term=GO:0030244,GO:0005515,GO:0019867;gbkey=CDS;gene=bcsC;go_component=outer membrane|0019867||IEA;go_function=protein binding|0005515||IEA;go_process=cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462517.1;locus_tag=C9F05_RS23020;product=cellulose synthase complex outer membrane protein BcsC;protein_id=WP_135370669.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	34342	36348	.	+	.	ID=gene-C9F05_RS23030;Name=hmsP;gbkey=Gene;gene=hmsP;gene_biotype=protein_coding;locus_tag=C9F05_RS23030;old_locus_tag=C9F05_23625
NZ_PYKE01000340.1	Protein Homology	CDS	34342	36348	.	+	0	ID=cds-WP_135370670.1;Parent=gene-C9F05_RS23030;Dbxref=GenBank:WP_135370670.1;Name=WP_135370670.1;Ontology_term=GO:0007165;gbkey=CDS;gene=hmsP;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001266355.1;locus_tag=C9F05_RS23030;product=biofilm formation regulator HmsP;protein_id=WP_135370670.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	36506	37792	.	+	.	ID=gene-C9F05_RS23035;Name=dctA;gbkey=Gene;gene=dctA;gene_biotype=protein_coding;locus_tag=C9F05_RS23035;old_locus_tag=C9F05_23630
NZ_PYKE01000340.1	Protein Homology	CDS	36506	37792	.	+	0	ID=cds-WP_000858228.1;Parent=gene-C9F05_RS23035;Dbxref=GenBank:WP_000858228.1;Name=WP_000858228.1;gbkey=CDS;gene=dctA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462515.1;locus_tag=C9F05_RS23035;product=C4-dicarboxylate transporter DctC;protein_id=WP_000858228.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	38012	39499	.	+	.	ID=gene-C9F05_RS23040;Name=C9F05_RS23040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23040;old_locus_tag=C9F05_23635
NZ_PYKE01000340.1	Protein Homology	CDS	38012	39499	.	+	0	ID=cds-WP_001163182.1;Parent=gene-C9F05_RS23040;Dbxref=GenBank:WP_001163182.1;Name=WP_001163182.1;Ontology_term=GO:0008237,GO:0046872;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462514.1;locus_tag=C9F05_RS23040;product=M16 family metallopeptidase;protein_id=WP_001163182.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	39553	40482	.	-	.	ID=gene-C9F05_RS23045;Name=C9F05_RS23045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23045;old_locus_tag=C9F05_23640
NZ_PYKE01000340.1	Protein Homology	CDS	39553	40482	.	-	0	ID=cds-WP_000037583.1;Parent=gene-C9F05_RS23045;Dbxref=GenBank:WP_000037583.1;Name=WP_000037583.1;Ontology_term=GO:0005975,GO:0019200,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462513.1;locus_tag=C9F05_RS23045;product=sugar kinase;protein_id=WP_000037583.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	40711	41478	.	+	.	ID=gene-C9F05_RS23050;Name=pdeH;gbkey=Gene;gene=pdeH;gene_biotype=protein_coding;locus_tag=C9F05_RS23050;old_locus_tag=C9F05_23645
NZ_PYKE01000340.1	Protein Homology	CDS	40711	41478	.	+	0	ID=cds-WP_000595626.1;Parent=gene-C9F05_RS23050;Dbxref=GenBank:WP_000595626.1;Name=WP_000595626.1;gbkey=CDS;gene=pdeH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462512.1;locus_tag=C9F05_RS23050;product=cyclic-guanylate-specific phosphodiesterase;protein_id=WP_000595626.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	41588	43648	.	+	.	ID=gene-C9F05_RS23055;Name=C9F05_RS23055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23055;old_locus_tag=C9F05_23650
NZ_PYKE01000340.1	Protein Homology	CDS	41588	43648	.	+	0	ID=cds-WP_000158674.1;Parent=gene-C9F05_RS23055;Dbxref=GenBank:WP_000158674.1;Name=WP_000158674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462511.1;locus_tag=C9F05_RS23055;product=AsmA family protein;protein_id=WP_000158674.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	43688	45010	.	-	.	ID=gene-C9F05_RS23060;Name=C9F05_RS23060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23060;old_locus_tag=C9F05_23655
NZ_PYKE01000340.1	Protein Homology	CDS	43688	45010	.	-	0	ID=cds-WP_001148981.1;Parent=gene-C9F05_RS23060;Dbxref=GenBank:WP_001148981.1;Name=WP_001148981.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462510.1;locus_tag=C9F05_RS23060;product=MFS transporter;protein_id=WP_001148981.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	45361	46389	.	-	.	ID=gene-C9F05_RS23065;Name=yhjD;gbkey=Gene;gene=yhjD;gene_biotype=protein_coding;locus_tag=C9F05_RS23065;old_locus_tag=C9F05_23660
NZ_PYKE01000340.1	Protein Homology	CDS	45361	46389	.	-	0	ID=cds-WP_000191231.1;Parent=gene-C9F05_RS23065;Dbxref=GenBank:WP_000191231.1;Name=WP_000191231.1;gbkey=CDS;gene=yhjD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462509.1;locus_tag=C9F05_RS23065;product=inner membrane protein YhjD;protein_id=WP_000191231.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	46462	47361	.	-	.	ID=gene-C9F05_RS23070;Name=C9F05_RS23070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23070;old_locus_tag=C9F05_23665
NZ_PYKE01000340.1	Protein Homology	CDS	46462	47361	.	-	0	ID=cds-WP_023206993.1;Parent=gene-C9F05_RS23070;Dbxref=GenBank:WP_023206993.1;Name=WP_023206993.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462508.1;locus_tag=C9F05_RS23070;product=LysR family transcriptional regulator;protein_id=WP_023206993.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	47992	48594	.	+	.	ID=gene-C9F05_RS23075;Name=C9F05_RS23075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23075;old_locus_tag=C9F05_23670
NZ_PYKE01000340.1	Protein Homology	CDS	47992	48594	.	+	0	ID=cds-WP_001196081.1;Parent=gene-C9F05_RS23075;Dbxref=GenBank:WP_001196081.1;Name=WP_001196081.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462507.1;locus_tag=C9F05_RS23075;product=response regulator transcription factor;protein_id=WP_001196081.1;transl_table=11
NZ_PYKE01000340.1	RefSeq	gene	48600	48956	.	-	.	ID=gene-C9F05_RS23080;Name=C9F05_RS23080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23080;old_locus_tag=C9F05_23675
NZ_PYKE01000340.1	Protein Homology	CDS	48600	48956	.	-	0	ID=cds-WP_001120251.1;Parent=gene-C9F05_RS23080;Dbxref=GenBank:WP_001120251.1;Name=WP_001120251.1;Ontology_term=GO:0009253,GO:0016998,GO:0003796;gbkey=CDS;go_function=lysozyme activity|0003796||IEA;go_process=peptidoglycan catabolic process|0009253||IEA,cell wall macromolecule catabolic process|0016998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462506.1;locus_tag=C9F05_RS23080;product=glycoside hydrolase family protein;protein_id=WP_001120251.1;transl_table=11
##sequence-region NZ_PYKE01000182.1 1 12716
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000182.1	RefSeq	region	1	12716	.	+	.	ID=NZ_PYKE01000182.1:1..12716;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000182.1	RefSeq	gene	292	675	.	+	.	ID=gene-C9F05_RS12235;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=C9F05_RS12235;old_locus_tag=C9F05_12580
NZ_PYKE01000182.1	Protein Homology	CDS	292	675	.	+	0	ID=cds-WP_001275691.1;Parent=gene-C9F05_RS12235;Dbxref=GenBank:WP_001275691.1;Name=WP_001275691.1;gbkey=CDS;gene=secE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007665874.1;locus_tag=C9F05_RS12235;product=preprotein translocase subunit SecE;protein_id=WP_001275691.1;transl_table=11
NZ_PYKE01000182.1	RefSeq	gene	677	1222	.	+	.	ID=gene-C9F05_RS12240;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=C9F05_RS12240;old_locus_tag=C9F05_12585
NZ_PYKE01000182.1	Protein Homology	CDS	677	1222	.	+	0	ID=cds-WP_001287521.1;Parent=gene-C9F05_RS12240;Dbxref=GenBank:WP_001287521.1;Name=WP_001287521.1;Ontology_term=GO:0032784;gbkey=CDS;gene=nusG;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005280494.1;locus_tag=C9F05_RS12240;product=transcription termination/antitermination protein NusG;protein_id=WP_001287521.1;transl_table=11
NZ_PYKE01000182.1	RefSeq	gene	1380	1808	.	+	.	ID=gene-C9F05_RS12245;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=C9F05_RS12245;old_locus_tag=C9F05_12590
NZ_PYKE01000182.1	Protein Homology	CDS	1380	1808	.	+	0	ID=cds-WP_001085926.1;Parent=gene-C9F05_RS12245;Dbxref=GenBank:WP_001085926.1;Name=WP_001085926.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006121495.1;locus_tag=C9F05_RS12245;product=50S ribosomal protein L11;protein_id=WP_001085926.1;transl_table=11
NZ_PYKE01000182.1	RefSeq	gene	1812	2516	.	+	.	ID=gene-C9F05_RS12250;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=C9F05_RS12250;old_locus_tag=C9F05_12595
NZ_PYKE01000182.1	Protein Homology	CDS	1812	2516	.	+	0	ID=cds-WP_001096676.1;Parent=gene-C9F05_RS12250;Dbxref=GenBank:WP_001096676.1;Name=WP_001096676.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0015934;gbkey=CDS;gene=rplA;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463019.1;locus_tag=C9F05_RS12250;product=50S ribosomal protein L1;protein_id=WP_001096676.1;transl_table=11
NZ_PYKE01000182.1	RefSeq	gene	2936	3433	.	+	.	ID=gene-C9F05_RS12255;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=C9F05_RS12255;old_locus_tag=C9F05_12605
NZ_PYKE01000182.1	Protein Homology	CDS	2936	3433	.	+	0	ID=cds-WP_001207203.1;Parent=gene-C9F05_RS12255;Dbxref=GenBank:WP_001207203.1;Name=WP_001207203.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002438625.1;locus_tag=C9F05_RS12255;product=50S ribosomal protein L10;protein_id=WP_001207203.1;transl_table=11
NZ_PYKE01000182.1	RefSeq	gene	3500	3865	.	+	.	ID=gene-C9F05_RS12260;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=C9F05_RS12260;old_locus_tag=C9F05_12610
NZ_PYKE01000182.1	Protein Homology	CDS	3500	3865	.	+	0	ID=cds-WP_000028882.1;Parent=gene-C9F05_RS12260;Dbxref=GenBank:WP_000028882.1;Name=WP_000028882.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplL;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122872.1;locus_tag=C9F05_RS12260;product=50S ribosomal protein L7/L12;protein_id=WP_000028882.1;transl_table=11
NZ_PYKE01000182.1	RefSeq	gene	4183	8211	.	+	.	ID=gene-C9F05_RS12265;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=C9F05_RS12265;old_locus_tag=C9F05_12615
NZ_PYKE01000182.1	Protein Homology	CDS	4183	8211	.	+	0	ID=cds-WP_000263105.1;Parent=gene-C9F05_RS12265;Dbxref=GenBank:WP_000263105.1;Name=WP_000263105.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoB;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004870488.1;locus_tag=C9F05_RS12265;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_000263105.1;transl_table=11
NZ_PYKE01000182.1	RefSeq	gene	8288	12511	.	+	.	ID=gene-C9F05_RS12270;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=C9F05_RS12270;old_locus_tag=C9F05_12620
NZ_PYKE01000182.1	Protein Homology	CDS	8288	12511	.	+	0	ID=cds-WP_000653965.1;Parent=gene-C9F05_RS12270;Dbxref=GenBank:WP_000653965.1;Name=WP_000653965.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoC;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463023.1;locus_tag=C9F05_RS12270;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_000653965.1;transl_table=11
NZ_PYKE01000182.1	RefSeq	pseudogene	12553	12716	.	+	.	ID=gene-C9F05_RS23835;Name=C9F05_RS23835;end_range=12716,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23835;partial=true;pseudo=true
NZ_PYKE01000182.1	Protein Homology	CDS	12553	12716	.	+	0	ID=cds-C9F05_RS23835;Parent=gene-C9F05_RS23835;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=12716,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463024.1;locus_tag=C9F05_RS23835;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000087.1 1 12374
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000087.1	RefSeq	region	1	12374	.	+	.	ID=NZ_PYKE01000087.1:1..12374;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000087.1	RefSeq	gene	331	780	.	+	.	ID=gene-C9F05_RS05945;Name=rpiB;gbkey=Gene;gene=rpiB;gene_biotype=protein_coding;gene_synonym=alsI;locus_tag=C9F05_RS05945;old_locus_tag=C9F05_06055
NZ_PYKE01000087.1	Protein Homology	CDS	331	780	.	+	0	ID=cds-WP_031605719.1;Parent=gene-C9F05_RS05945;Dbxref=GenBank:WP_031605719.1;Name=WP_031605719.1;gbkey=CDS;gene=rpiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418514.1;locus_tag=C9F05_RS05945;product=bifunctional allose-6-phosphate isomerase/ribose-5-phosphate isomerase RpiB;protein_id=WP_031605719.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	910	1353	.	-	.	ID=gene-C9F05_RS05950;Name=yjdN;gbkey=Gene;gene=yjdN;gene_biotype=protein_coding;locus_tag=C9F05_RS05950;old_locus_tag=C9F05_06060
NZ_PYKE01000087.1	Protein Homology	CDS	910	1353	.	-	0	ID=cds-WP_001131303.1;Parent=gene-C9F05_RS05950;Dbxref=GenBank:WP_001131303.1;Name=WP_001131303.1;gbkey=CDS;gene=yjdN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463153.1;locus_tag=C9F05_RS05950;product=VOC family metalloprotein YjdN;protein_id=WP_001131303.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	1473	1808	.	-	.	ID=gene-C9F05_RS05955;Name=C9F05_RS05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05955;old_locus_tag=C9F05_06065
NZ_PYKE01000087.1	Protein Homology	CDS	1473	1808	.	-	0	ID=cds-WP_000056482.1;Parent=gene-C9F05_RS05955;Dbxref=GenBank:WP_000056482.1;Name=WP_000056482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463154.1;locus_tag=C9F05_RS05955;product=zinc ribbon domain-containing protein YjdM;protein_id=WP_000056482.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	2276	3778	.	+	.	ID=gene-C9F05_RS05960;Name=proP;gbkey=Gene;gene=proP;gene_biotype=protein_coding;locus_tag=C9F05_RS05960;old_locus_tag=C9F05_06070
NZ_PYKE01000087.1	Protein Homology	CDS	2276	3778	.	+	0	ID=cds-WP_000919710.1;Parent=gene-C9F05_RS05960;Dbxref=GenBank:WP_000919710.1;Name=WP_000919710.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=proP;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463155.1;locus_tag=C9F05_RS05960;product=glycine betaine/L-proline transporter ProP;protein_id=WP_000919710.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	3848	3937	.	+	.	ID=gene-C9F05_RS05965;Name=pmrR;gbkey=Gene;gene=pmrR;gene_biotype=protein_coding;locus_tag=C9F05_RS05965;old_locus_tag=C9F05_06075
NZ_PYKE01000087.1	Protein Homology	CDS	3848	3937	.	+	0	ID=cds-WP_000844399.1;Parent=gene-C9F05_RS05965;Dbxref=GenBank:WP_000844399.1;Name=WP_000844399.1;gbkey=CDS;gene=pmrR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000844399.1;locus_tag=C9F05_RS05965;product=LpxT activity modulator PmrR;protein_id=WP_000844399.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	3945	5015	.	-	.	ID=gene-C9F05_RS05970;Name=pmrB;gbkey=Gene;gene=pmrB;gene_biotype=protein_coding;locus_tag=C9F05_RS05970;old_locus_tag=C9F05_06080
NZ_PYKE01000087.1	Protein Homology	CDS	3945	5015	.	-	0	ID=cds-WP_001212189.1;Parent=gene-C9F05_RS05970;Dbxref=GenBank:WP_001212189.1;Name=WP_001212189.1;gbkey=CDS;gene=pmrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463156.1;locus_tag=C9F05_RS05970;product=two-component system sensor histidine kinase PmrB;protein_id=WP_001212189.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	5025	5693	.	-	.	ID=gene-C9F05_RS05975;Name=pmrA;gbkey=Gene;gene=pmrA;gene_biotype=protein_coding;locus_tag=C9F05_RS05975;old_locus_tag=C9F05_06085
NZ_PYKE01000087.1	Protein Homology	CDS	5025	5693	.	-	0	ID=cds-WP_000697899.1;Parent=gene-C9F05_RS05975;Dbxref=GenBank:WP_000697899.1;Name=WP_000697899.1;gbkey=CDS;gene=pmrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463157.1;locus_tag=C9F05_RS05975;product=two-component system response regulator PmrA;protein_id=WP_000697899.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	5690	7333	.	-	.	ID=gene-C9F05_RS05980;Name=eptA;gbkey=Gene;gene=eptA;gene_biotype=protein_coding;locus_tag=C9F05_RS05980;old_locus_tag=C9F05_06090
NZ_PYKE01000087.1	Protein Homology	CDS	5690	7333	.	-	0	ID=cds-WP_050068061.1;Parent=gene-C9F05_RS05980;Dbxref=GenBank:WP_050068061.1;Name=WP_050068061.1;Ontology_term=GO:0016772;gbkey=CDS;gene=eptA;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463158.1;locus_tag=C9F05_RS05980;product=phosphoethanolamine transferase EptA;protein_id=WP_050068061.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	7467	8804	.	-	.	ID=gene-C9F05_RS05985;Name=adiC;gbkey=Gene;gene=adiC;gene_biotype=protein_coding;locus_tag=C9F05_RS05985;old_locus_tag=C9F05_06095
NZ_PYKE01000087.1	Protein Homology	CDS	7467	8804	.	-	0	ID=cds-WP_135370106.1;Parent=gene-C9F05_RS05985;Dbxref=GenBank:WP_135370106.1;Name=WP_135370106.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=adiC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463159.1;locus_tag=C9F05_RS05985;product=arginine/agmatine antiporter;protein_id=WP_135370106.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	8944	9705	.	-	.	ID=gene-C9F05_RS05990;Name=C9F05_RS05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05990;old_locus_tag=C9F05_06100
NZ_PYKE01000087.1	Protein Homology	CDS	8944	9705	.	-	0	ID=cds-WP_001217083.1;Parent=gene-C9F05_RS05990;Dbxref=GenBank:WP_001217083.1;Name=WP_001217083.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463160.1;locus_tag=C9F05_RS05990;product=AraC family transcriptional regulator;protein_id=WP_001217083.1;transl_table=11
NZ_PYKE01000087.1	RefSeq	gene	10003	12270	.	-	.	ID=gene-C9F05_RS05995;Name=adiA;gbkey=Gene;gene=adiA;gene_biotype=protein_coding;locus_tag=C9F05_RS05995;old_locus_tag=C9F05_06105
NZ_PYKE01000087.1	Protein Homology	CDS	10003	12270	.	-	0	ID=cds-WP_001542850.1;Parent=gene-C9F05_RS05995;Dbxref=GenBank:WP_001542850.1;Name=WP_001542850.1;Ontology_term=GO:0006520,GO:0016831;gbkey=CDS;gene=adiA;go_function=carboxy-lyase activity|0016831||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709824.2;locus_tag=C9F05_RS05995;product=arginine decarboxylase;protein_id=WP_001542850.1;transl_table=11
##sequence-region NZ_PYKE01000180.1 1 12190
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000180.1	RefSeq	region	1	12190	.	+	.	ID=NZ_PYKE01000180.1:1..12190;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000180.1	RefSeq	gene	249	1223	.	+	.	ID=gene-C9F05_RS12175;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=C9F05_RS12175;old_locus_tag=C9F05_12520
NZ_PYKE01000180.1	Protein Homology	CDS	249	1223	.	+	0	ID=cds-WP_000130728.1;Parent=gene-C9F05_RS12175;Dbxref=GenBank:WP_000130728.1;Name=WP_000130728.1;Ontology_term=GO:0033014,GO:0004655;gbkey=CDS;gene=hemB;go_function=porphobilinogen synthase activity|0004655||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459367.1;locus_tag=C9F05_RS12175;product=porphobilinogen synthase;protein_id=WP_000130728.1;transl_table=11
NZ_PYKE01000180.1	RefSeq	gene	1327	3213	.	-	.	ID=gene-C9F05_RS12180;Name=prpE;gbkey=Gene;gene=prpE;gene_biotype=protein_coding;locus_tag=C9F05_RS12180;old_locus_tag=C9F05_12525
NZ_PYKE01000180.1	Protein Homology	CDS	1327	3213	.	-	0	ID=cds-WP_017465391.1;Parent=gene-C9F05_RS12180;Dbxref=GenBank:WP_017465391.1;Name=WP_017465391.1;Ontology_term=GO:0019629,GO:0050218;gbkey=CDS;gene=prpE;go_function=propionate-CoA ligase activity|0050218||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459366.1;locus_tag=C9F05_RS12180;product=propionate--CoA ligase;protein_id=WP_017465391.1;transl_table=11
NZ_PYKE01000180.1	RefSeq	gene	3254	4705	.	-	.	ID=gene-C9F05_RS12185;Name=C9F05_RS12185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12185;old_locus_tag=C9F05_12530
NZ_PYKE01000180.1	Protein Homology	CDS	3254	4705	.	-	0	ID=cds-WP_135370318.1;Parent=gene-C9F05_RS12185;Dbxref=GenBank:WP_135370318.1;Name=WP_135370318.1;Ontology_term=GO:0019679,GO:0047547,GO:0051537;gbkey=CDS;go_function=2-methylcitrate dehydratase activity|0047547||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=propionate metabolic process%2C methylcitrate cycle|0019679||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459365.1;locus_tag=C9F05_RS12185;product=bifunctional 2-methylcitrate dehydratase/aconitate hydratase;protein_id=WP_135370318.1;transl_table=11
NZ_PYKE01000180.1	RefSeq	gene	4745	5914	.	-	.	ID=gene-C9F05_RS12190;Name=prpC;gbkey=Gene;gene=prpC;gene_biotype=protein_coding;locus_tag=C9F05_RS12190;old_locus_tag=C9F05_12535
NZ_PYKE01000180.1	Protein Homology	CDS	4745	5914	.	-	0	ID=cds-WP_000132749.1;Parent=gene-C9F05_RS12190;Dbxref=GenBank:WP_000132749.1;Name=WP_000132749.1;Ontology_term=GO:0019679,GO:0036440,GO:0050440;gbkey=CDS;gene=prpC;go_function=citrate synthase activity|0036440||IEA,2-methylcitrate synthase activity|0050440||IEA;go_process=propionate metabolic process%2C methylcitrate cycle|0019679||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459364.1;locus_tag=C9F05_RS12190;product=bifunctional 2-methylcitrate synthase/citrate synthase;protein_id=WP_000132749.1;transl_table=11
NZ_PYKE01000180.1	RefSeq	gene	6037	6924	.	-	.	ID=gene-C9F05_RS12195;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=protein_coding;locus_tag=C9F05_RS12195;old_locus_tag=C9F05_12540
NZ_PYKE01000180.1	Protein Homology	CDS	6037	6924	.	-	0	ID=cds-WP_000052225.1;Parent=gene-C9F05_RS12195;Dbxref=GenBank:WP_000052225.1;Name=WP_000052225.1;Ontology_term=GO:0019629,GO:0046421;gbkey=CDS;gene=prpB;go_function=methylisocitrate lyase activity|0046421||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459363.1;locus_tag=C9F05_RS12195;product=methylisocitrate lyase;protein_id=WP_000052225.1;transl_table=11
NZ_PYKE01000180.1	RefSeq	gene	7190	8815	.	+	.	ID=gene-C9F05_RS12200;Name=prpR;gbkey=Gene;gene=prpR;gene_biotype=protein_coding;locus_tag=C9F05_RS12200;old_locus_tag=C9F05_12545
NZ_PYKE01000180.1	Protein Homology	CDS	7190	8815	.	+	0	ID=cds-WP_000205281.1;Parent=gene-C9F05_RS12200;Dbxref=GenBank:WP_000205281.1;Name=WP_000205281.1;gbkey=CDS;gene=prpR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459362.1;locus_tag=C9F05_RS12200;product=propionate catabolism operon regulatory protein PrpR;protein_id=WP_000205281.1;transl_table=11
NZ_PYKE01000180.1	RefSeq	gene	8951	9226	.	-	.	ID=gene-C9F05_RS12205;Name=yahO;gbkey=Gene;gene=yahO;gene_biotype=protein_coding;locus_tag=C9F05_RS12205;old_locus_tag=C9F05_12550
NZ_PYKE01000180.1	Protein Homology	CDS	8951	9226	.	-	0	ID=cds-WP_000848026.1;Parent=gene-C9F05_RS12205;Dbxref=GenBank:WP_000848026.1;Name=WP_000848026.1;gbkey=CDS;gene=yahO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459361.1;locus_tag=C9F05_RS12205;product=DUF1471 family periplasmic protein YahO;protein_id=WP_000848026.1;transl_table=11
NZ_PYKE01000180.1	RefSeq	gene	9458	10090	.	+	.	ID=gene-C9F05_RS12210;Name=C9F05_RS12210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12210;old_locus_tag=C9F05_12555
NZ_PYKE01000180.1	Protein Homology	CDS	9458	10090	.	+	0	ID=cds-WP_000433131.1;Parent=gene-C9F05_RS12210;Dbxref=GenBank:WP_000433131.1;Name=WP_000433131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459360.1;locus_tag=C9F05_RS12210;product=LysE family transporter;protein_id=WP_000433131.1;transl_table=11
NZ_PYKE01000180.1	RefSeq	gene	10131	12190	.	-	.	ID=gene-C9F05_RS12215;Name=foxA;end_range=12190,.;gbkey=Gene;gene=foxA;gene_biotype=protein_coding;locus_tag=C9F05_RS12215;old_locus_tag=C9F05_12560;partial=true
NZ_PYKE01000180.1	Protein Homology	CDS	10131	12190	.	-	2	ID=cds-WP_255121307.1;Parent=gene-C9F05_RS12215;Dbxref=GenBank:WP_255121307.1;Name=WP_255121307.1;Ontology_term=GO:0015344,GO:0038023;end_range=12190,.;gbkey=CDS;gene=foxA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459359.1;locus_tag=C9F05_RS12215;partial=true;product=ferrioxamine B receptor FoxA;protein_id=WP_255121307.1;transl_table=11
##sequence-region NZ_PYKE01000209.1 1 48836
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000209.1	RefSeq	region	1	48836	.	+	.	ID=NZ_PYKE01000209.1:1..48836;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000209.1	RefSeq	gene	61	1107	.	-	.	ID=gene-C9F05_RS13420;Name=pyrC;gbkey=Gene;gene=pyrC;gene_biotype=protein_coding;locus_tag=C9F05_RS13420;old_locus_tag=C9F05_13800
NZ_PYKE01000209.1	Protein Homology	CDS	61	1107	.	-	0	ID=cds-WP_079843166.1;Parent=gene-C9F05_RS13420;Dbxref=GenBank:WP_079843166.1;Name=WP_079843166.1;Ontology_term=GO:0019856,GO:0004151;gbkey=CDS;gene=pyrC;go_function=dihydroorotase activity|0004151||IEA;go_process=pyrimidine nucleobase biosynthetic process|0019856||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460134.1;locus_tag=C9F05_RS13420;product=dihydroorotase;protein_id=WP_079843166.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	1212	1772	.	-	.	ID=gene-C9F05_RS13425;Name=C9F05_RS13425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13425;old_locus_tag=C9F05_13805
NZ_PYKE01000209.1	Protein Homology	CDS	1212	1772	.	-	0	ID=cds-WP_000713057.1;Parent=gene-C9F05_RS13425;Dbxref=GenBank:WP_000713057.1;Name=WP_000713057.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460135.1;locus_tag=C9F05_RS13425;product=lipoprotein;protein_id=WP_000713057.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	1897	2544	.	-	.	ID=gene-C9F05_RS13430;Name=grxB;gbkey=Gene;gene=grxB;gene_biotype=protein_coding;locus_tag=C9F05_RS13430;old_locus_tag=C9F05_13810
NZ_PYKE01000209.1	Protein Homology	CDS	1897	2544	.	-	0	ID=cds-WP_000780893.1;Parent=gene-C9F05_RS13430;Dbxref=GenBank:WP_000780893.1;Name=WP_000780893.1;Ontology_term=GO:0006749,GO:0004362,GO:0005515;gbkey=CDS;gene=grxB;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460136.1;locus_tag=C9F05_RS13430;product=glutaredoxin 2;protein_id=WP_000780893.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	2608	3816	.	-	.	ID=gene-C9F05_RS13435;Name=mdtH;gbkey=Gene;gene=mdtH;gene_biotype=protein_coding;locus_tag=C9F05_RS13435;old_locus_tag=C9F05_13815
NZ_PYKE01000209.1	Protein Homology	CDS	2608	3816	.	-	0	ID=cds-WP_000092178.1;Parent=gene-C9F05_RS13435;Dbxref=GenBank:WP_000092178.1;Name=WP_000092178.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=mdtH;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460137.1;locus_tag=C9F05_RS13435;product=multidrug efflux MFS transporter MdtH;protein_id=WP_000092178.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	4053	4637	.	+	.	ID=gene-C9F05_RS13440;Name=rimJ;gbkey=Gene;gene=rimJ;gene_biotype=protein_coding;locus_tag=C9F05_RS13440;old_locus_tag=C9F05_13820
NZ_PYKE01000209.1	Protein Homology	CDS	4053	4637	.	+	0	ID=cds-WP_000468204.1;Parent=gene-C9F05_RS13440;Dbxref=GenBank:WP_000468204.1;Name=WP_000468204.1;Ontology_term=GO:0008080;gbkey=CDS;gene=rimJ;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460138.1;locus_tag=C9F05_RS13440;product=ribosomal protein S5-alanine N-acetyltransferase;protein_id=WP_000468204.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	4673	5320	.	+	.	ID=gene-C9F05_RS13445;Name=C9F05_RS13445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13445;old_locus_tag=C9F05_13825
NZ_PYKE01000209.1	Protein Homology	CDS	4673	5320	.	+	0	ID=cds-WP_000873047.1;Parent=gene-C9F05_RS13445;Dbxref=GenBank:WP_000873047.1;Name=WP_000873047.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460139.1;locus_tag=C9F05_RS13445;product=YceH family protein;protein_id=WP_000873047.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	5322	6245	.	+	.	ID=gene-C9F05_RS13450;Name=C9F05_RS13450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13450;old_locus_tag=C9F05_13830
NZ_PYKE01000209.1	Protein Homology	CDS	5322	6245	.	+	0	ID=cds-WP_135370360.1;Parent=gene-C9F05_RS13450;Dbxref=GenBank:WP_135370360.1;Name=WP_135370360.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460140.1;locus_tag=C9F05_RS13450;product=Gfo/Idh/MocA family protein;protein_id=WP_135370360.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	6549	8084	.	+	.	ID=gene-C9F05_RS13455;Name=murJ;gbkey=Gene;gene=murJ;gene_biotype=protein_coding;locus_tag=C9F05_RS13455;old_locus_tag=C9F05_13835
NZ_PYKE01000209.1	Protein Homology	CDS	6549	8084	.	+	0	ID=cds-WP_001537775.1;Parent=gene-C9F05_RS13455;Dbxref=GenBank:WP_001537775.1;Name=WP_001537775.1;Ontology_term=GO:0009252,GO:0034204;gbkey=CDS;gene=murJ;go_process=peptidoglycan biosynthetic process|0009252||IEA,lipid translocation|0034204||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226258.1;locus_tag=C9F05_RS13455;product=murein biosynthesis integral membrane protein MurJ;protein_id=WP_001537775.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	8166	8588	.	-	.	ID=gene-C9F05_RS13460;Name=flgN;gbkey=Gene;gene=flgN;gene_biotype=protein_coding;locus_tag=C9F05_RS13460;old_locus_tag=C9F05_13840
NZ_PYKE01000209.1	Protein Homology	CDS	8166	8588	.	-	0	ID=cds-WP_000197547.1;Parent=gene-C9F05_RS13460;Dbxref=GenBank:WP_000197547.1;Name=WP_000197547.1;gbkey=CDS;gene=flgN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460142.1;locus_tag=C9F05_RS13460;product=flagella biosynthesis chaperone FlgN;protein_id=WP_000197547.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	8593	8886	.	-	.	ID=gene-C9F05_RS13465;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=C9F05_RS13465;old_locus_tag=C9F05_13845
NZ_PYKE01000209.1	Protein Homology	CDS	8593	8886	.	-	0	ID=cds-WP_000020893.1;Parent=gene-C9F05_RS13465;Dbxref=GenBank:WP_000020893.1;Name=WP_000020893.1;Ontology_term=GO:0045892;gbkey=CDS;gene=flgM;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460143.1;locus_tag=C9F05_RS13465;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=WP_000020893.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	8978	9637	.	-	.	ID=gene-C9F05_RS13470;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=C9F05_RS13470;old_locus_tag=C9F05_13850
NZ_PYKE01000209.1	Protein Homology	CDS	8978	9637	.	-	0	ID=cds-WP_135370361.1;Parent=gene-C9F05_RS13470;Dbxref=GenBank:WP_135370361.1;Name=WP_135370361.1;Ontology_term=GO:0001539,GO:0005198,GO:0009428;gbkey=CDS;gene=flgA;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460144.1;locus_tag=C9F05_RS13470;product=flagellar basal body P-ring formation chaperone FlgA;protein_id=WP_135370361.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	9794	10210	.	+	.	ID=gene-C9F05_RS13475;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=C9F05_RS13475;old_locus_tag=C9F05_13860
NZ_PYKE01000209.1	Protein Homology	CDS	9794	10210	.	+	0	ID=cds-WP_000887041.1;Parent=gene-C9F05_RS13475;Dbxref=GenBank:WP_000887041.1;Name=WP_000887041.1;Ontology_term=GO:0071973,GO:0030694;gbkey=CDS;gene=flgB;go_component=bacterial-type flagellum basal body%2C rod|0030694||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460145.1;locus_tag=C9F05_RS13475;product=flagellar basal body rod protein FlgB;protein_id=WP_000887041.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	10214	10618	.	+	.	ID=gene-C9F05_RS13480;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=C9F05_RS13480;old_locus_tag=C9F05_13865
NZ_PYKE01000209.1	Protein Homology	CDS	10214	10618	.	+	0	ID=cds-WP_001196448.1;Parent=gene-C9F05_RS13480;Dbxref=GenBank:WP_001196448.1;Name=WP_001196448.1;Ontology_term=GO:0071973,GO:0030694;gbkey=CDS;gene=flgC;go_component=bacterial-type flagellum basal body%2C rod|0030694||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740734.1;locus_tag=C9F05_RS13480;product=flagellar basal body rod protein FlgC;protein_id=WP_001196448.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	10630	11328	.	+	.	ID=gene-C9F05_RS13485;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=C9F05_RS13485;old_locus_tag=C9F05_13870
NZ_PYKE01000209.1	Protein Homology	CDS	10630	11328	.	+	0	ID=cds-WP_000020450.1;Parent=gene-C9F05_RS13485;Dbxref=GenBank:WP_000020450.1;Name=WP_000020450.1;gbkey=CDS;gene=flgD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460147.1;locus_tag=C9F05_RS13485;product=flagellar hook assembly protein FlgD;protein_id=WP_000020450.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	11355	12572	.	+	.	ID=gene-C9F05_RS13490;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=C9F05_RS13490;old_locus_tag=C9F05_13875
NZ_PYKE01000209.1	Protein Homology	CDS	11355	12572	.	+	0	ID=cds-WP_017440965.1;Parent=gene-C9F05_RS13490;Dbxref=GenBank:WP_017440965.1;Name=WP_017440965.1;gbkey=CDS;gene=flgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460148.1;locus_tag=C9F05_RS13490;product=flagellar hook protein FlgE;protein_id=WP_017440965.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	12593	13348	.	+	.	ID=gene-C9F05_RS13495;Name=C9F05_RS13495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13495;old_locus_tag=C9F05_13880
NZ_PYKE01000209.1	Protein Homology	CDS	12593	13348	.	+	0	ID=cds-WP_000349278.1;Parent=gene-C9F05_RS13495;Dbxref=GenBank:WP_000349278.1;Name=WP_000349278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460149.1;locus_tag=C9F05_RS13495;product=flagellar basal body rod protein FlgF;protein_id=WP_000349278.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	13362	14144	.	+	.	ID=gene-C9F05_RS13500;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=C9F05_RS13500;old_locus_tag=C9F05_13885
NZ_PYKE01000209.1	Protein Homology	CDS	13362	14144	.	+	0	ID=cds-WP_000625851.1;Parent=gene-C9F05_RS13500;Dbxref=GenBank:WP_000625851.1;Name=WP_000625851.1;Ontology_term=GO:0071973,GO:0009426;gbkey=CDS;gene=flgG;go_component=bacterial-type flagellum basal body%2C distal rod|0009426||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006819466.1;locus_tag=C9F05_RS13500;product=flagellar basal-body rod protein FlgG;protein_id=WP_000625851.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	14199	14897	.	+	.	ID=gene-C9F05_RS13505;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=C9F05_RS13505;old_locus_tag=C9F05_13890
NZ_PYKE01000209.1	Protein Homology	CDS	14199	14897	.	+	0	ID=cds-WP_001174897.1;Parent=gene-C9F05_RS13505;Dbxref=GenBank:WP_001174897.1;Name=WP_001174897.1;Ontology_term=GO:0071973,GO:0003774,GO:0009427;gbkey=CDS;gene=flgH;go_component=bacterial-type flagellum basal body%2C distal rod%2C L ring|0009427||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460151.1;locus_tag=C9F05_RS13505;product=flagellar basal body L-ring protein FlgH;protein_id=WP_001174897.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	14909	16006	.	+	.	ID=gene-C9F05_RS13510;Name=C9F05_RS13510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13510;old_locus_tag=C9F05_13895
NZ_PYKE01000209.1	Protein Homology	CDS	14909	16006	.	+	0	ID=cds-WP_001518955.1;Parent=gene-C9F05_RS13510;Dbxref=GenBank:WP_001518955.1;Name=WP_001518955.1;Ontology_term=GO:0071973,GO:0005198,GO:0009428,GO:0030288;gbkey=CDS;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA,outer membrane-bounded periplasmic space|0030288||IEA;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460152.1;locus_tag=C9F05_RS13510;product=flagellar basal body P-ring protein FlgI;protein_id=WP_001518955.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	16006	16956	.	+	.	ID=gene-C9F05_RS13515;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=C9F05_RS13515;old_locus_tag=C9F05_13900
NZ_PYKE01000209.1	Protein Homology	CDS	16006	16956	.	+	0	ID=cds-WP_000578685.1;Parent=gene-C9F05_RS13515;Dbxref=GenBank:WP_000578685.1;Name=WP_000578685.1;Ontology_term=GO:0044780,GO:0016798;gbkey=CDS;gene=flgJ;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460153.1;locus_tag=C9F05_RS13515;product=flagellar assembly peptidoglycan hydrolase FlgJ;protein_id=WP_000578685.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	17021	18682	.	+	.	ID=gene-C9F05_RS13520;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=C9F05_RS13520;old_locus_tag=C9F05_13905
NZ_PYKE01000209.1	Protein Homology	CDS	17021	18682	.	+	0	ID=cds-WP_000096425.1;Parent=gene-C9F05_RS13520;Dbxref=GenBank:WP_000096425.1;Name=WP_000096425.1;Ontology_term=GO:0044780,GO:0005198,GO:0009424;gbkey=CDS;gene=flgK;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460154.1;locus_tag=C9F05_RS13520;product=flagellar hook-associated protein FlgK;protein_id=WP_000096425.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	18697	19650	.	+	.	ID=gene-C9F05_RS13525;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=C9F05_RS13525;old_locus_tag=C9F05_13910
NZ_PYKE01000209.1	Protein Homology	CDS	18697	19650	.	+	0	ID=cds-WP_001223032.1;Parent=gene-C9F05_RS13525;Dbxref=GenBank:WP_001223032.1;Name=WP_001223032.1;Ontology_term=GO:0001539,GO:0005198,GO:0009424;gbkey=CDS;gene=flgL;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460155.1;locus_tag=C9F05_RS13525;product=flagellar hook-associated protein FlgL;protein_id=WP_001223032.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	19907	23113	.	-	.	ID=gene-C9F05_RS13530;Name=rne;gbkey=Gene;gene=rne;gene_biotype=protein_coding;locus_tag=C9F05_RS13530;old_locus_tag=C9F05_13920
NZ_PYKE01000209.1	Protein Homology	CDS	19907	23113	.	-	0	ID=cds-WP_135370362.1;Parent=gene-C9F05_RS13530;Dbxref=GenBank:WP_135370362.1;Name=WP_135370362.1;Ontology_term=GO:0006396,GO:0003723,GO:0008995;gbkey=CDS;gene=rne;go_function=RNA binding|0003723||IEA,ribonuclease E activity|0008995||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460156.1;locus_tag=C9F05_RS13530;product=ribonuclease E;protein_id=WP_135370362.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	23687	24646	.	+	.	ID=gene-C9F05_RS13540;Name=rluC;gbkey=Gene;gene=rluC;gene_biotype=protein_coding;locus_tag=C9F05_RS13540;old_locus_tag=C9F05_13930
NZ_PYKE01000209.1	Protein Homology	CDS	23687	24646	.	+	0	ID=cds-WP_000846314.1;Parent=gene-C9F05_RS13540;Dbxref=GenBank:WP_000846314.1;Name=WP_000846314.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluC;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460157.1;locus_tag=C9F05_RS13540;product=23S rRNA pseudouridine(955/2504/2580) synthase RluC;protein_id=WP_000846314.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	24802	25545	.	+	.	ID=gene-C9F05_RS13545;Name=C9F05_RS13545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13545;old_locus_tag=C9F05_13935
NZ_PYKE01000209.1	Protein Homology	CDS	24802	25545	.	+	0	ID=cds-WP_077918062.1;Parent=gene-C9F05_RS13545;Dbxref=GenBank:WP_077918062.1;Name=WP_077918062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460158.1;locus_tag=C9F05_RS13545;product=DUF3053 domain-containing protein;protein_id=WP_077918062.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	25748	25972	.	+	.	ID=gene-C9F05_RS13550;Name=C9F05_RS13550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13550;old_locus_tag=C9F05_13940
NZ_PYKE01000209.1	GeneMarkS-2+	CDS	25748	25972	.	+	0	ID=cds-WP_000528431.1;Parent=gene-C9F05_RS13550;Dbxref=GenBank:WP_000528431.1;Name=WP_000528431.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13550;product=hypothetical protein;protein_id=WP_000528431.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	26044	26628	.	-	.	ID=gene-C9F05_RS13555;Name=C9F05_RS13555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13555;old_locus_tag=C9F05_13945
NZ_PYKE01000209.1	Protein Homology	CDS	26044	26628	.	-	0	ID=cds-WP_001137605.1;Parent=gene-C9F05_RS13555;Dbxref=GenBank:WP_001137605.1;Name=WP_001137605.1;Ontology_term=GO:0009117,GO:0009146,GO:0000166,GO:0047429;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleotide metabolic process|0009117||IEA,purine nucleoside triphosphate catabolic process|0009146||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460159.1;locus_tag=C9F05_RS13555;product=Maf family protein;protein_id=WP_001137605.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	26826	27347	.	+	.	ID=gene-C9F05_RS13560;Name=yceD;gbkey=Gene;gene=yceD;gene_biotype=protein_coding;locus_tag=C9F05_RS13560;old_locus_tag=C9F05_13950
NZ_PYKE01000209.1	Protein Homology	CDS	26826	27347	.	+	0	ID=cds-WP_001174492.1;Parent=gene-C9F05_RS13560;Dbxref=GenBank:WP_001174492.1;Name=WP_001174492.1;gbkey=CDS;gene=yceD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001174481.1;locus_tag=C9F05_RS13560;product=23S rRNA accumulation protein YceD;protein_id=WP_001174492.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	27399	27572	.	+	.	ID=gene-C9F05_RS13565;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=C9F05_RS13565;old_locus_tag=C9F05_13955
NZ_PYKE01000209.1	Protein Homology	CDS	27399	27572	.	+	0	ID=cds-WP_000290727.1;Parent=gene-C9F05_RS13565;Dbxref=GenBank:WP_000290727.1;Name=WP_000290727.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmF;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125993.1;locus_tag=C9F05_RS13565;product=50S ribosomal protein L32;protein_id=WP_000290727.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	27706	28785	.	+	.	ID=gene-C9F05_RS13570;Name=plsX;gbkey=Gene;gene=plsX;gene_biotype=protein_coding;locus_tag=C9F05_RS13570;old_locus_tag=C9F05_13960
NZ_PYKE01000209.1	Protein Homology	CDS	27706	28785	.	+	0	ID=cds-WP_001518286.1;Parent=gene-C9F05_RS13570;Dbxref=GenBank:WP_001518286.1;Name=WP_001518286.1;Ontology_term=GO:0008610,GO:0043811;gbkey=CDS;gene=plsX;go_function=phosphate:acyl-[acyl carrier protein] acyltransferase activity|0043811||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460162.1;locus_tag=C9F05_RS13570;product=phosphate acyltransferase PlsX;protein_id=WP_001518286.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	28865	29818	.	+	.	ID=gene-C9F05_RS13575;Name=fabH;gbkey=Gene;gene=fabH;gene_biotype=protein_coding;locus_tag=C9F05_RS13575;old_locus_tag=C9F05_13965
NZ_PYKE01000209.1	Protein Homology	CDS	28865	29818	.	+	0	ID=cds-WP_000288148.1;Parent=gene-C9F05_RS13575;Dbxref=GenBank:WP_000288148.1;Name=WP_000288148.1;gbkey=CDS;gene=fabH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129019.1;locus_tag=C9F05_RS13575;product=beta-ketoacyl-ACP synthase III;protein_id=WP_000288148.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	29834	30763	.	+	.	ID=gene-C9F05_RS13580;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=C9F05_RS13580;old_locus_tag=C9F05_13970
NZ_PYKE01000209.1	Protein Homology	CDS	29834	30763	.	+	0	ID=cds-WP_000191343.1;Parent=gene-C9F05_RS13580;Dbxref=GenBank:WP_000191343.1;Name=WP_000191343.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460164.1;locus_tag=C9F05_RS13580;product=ACP S-malonyltransferase;protein_id=WP_000191343.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	30776	31510	.	+	.	ID=gene-C9F05_RS13585;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=C9F05_RS13585;old_locus_tag=C9F05_13975
NZ_PYKE01000209.1	Protein Homology	CDS	30776	31510	.	+	0	ID=cds-WP_000007236.1;Parent=gene-C9F05_RS13585;Dbxref=GenBank:WP_000007236.1;Name=WP_000007236.1;Ontology_term=GO:0006633,GO:0004316,GO:0051287;gbkey=CDS;gene=fabG;go_function=3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|0004316||IEA,NAD binding|0051287||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129017.1;locus_tag=C9F05_RS13585;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_000007236.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	31666	31902	.	+	.	ID=gene-C9F05_RS13590;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=C9F05_RS13590;old_locus_tag=C9F05_13980
NZ_PYKE01000209.1	Protein Homology	CDS	31666	31902	.	+	0	ID=cds-WP_000103754.1;Parent=gene-C9F05_RS13590;Dbxref=GenBank:WP_000103754.1;Name=WP_000103754.1;Ontology_term=GO:0006633;gbkey=CDS;gene=acpP;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016535861.1;locus_tag=C9F05_RS13590;product=acyl carrier protein;protein_id=WP_000103754.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	31988	33229	.	+	.	ID=gene-C9F05_RS13595;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=C9F05_RS13595;old_locus_tag=C9F05_13985
NZ_PYKE01000209.1	Protein Homology	CDS	31988	33229	.	+	0	ID=cds-WP_080178330.1;Parent=gene-C9F05_RS13595;Dbxref=GenBank:WP_080178330.1;Name=WP_080178330.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460167.1;locus_tag=C9F05_RS13595;product=beta-ketoacyl-ACP synthase II;protein_id=WP_080178330.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	33353	34162	.	+	.	ID=gene-C9F05_RS13600;Name=pabC;gbkey=Gene;gene=pabC;gene_biotype=protein_coding;locus_tag=C9F05_RS13600;old_locus_tag=C9F05_13990
NZ_PYKE01000209.1	Protein Homology	CDS	33353	34162	.	+	0	ID=cds-WP_135370363.1;Parent=gene-C9F05_RS13600;Dbxref=GenBank:WP_135370363.1;Name=WP_135370363.1;Ontology_term=GO:0046656,GO:0008696,GO:0030170;gbkey=CDS;gene=pabC;go_function=4-amino-4-deoxychorismate lyase activity|0008696||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=folic acid biosynthetic process|0046656||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460168.1;locus_tag=C9F05_RS13600;product=aminodeoxychorismate lyase;protein_id=WP_135370363.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	34165	35187	.	+	.	ID=gene-C9F05_RS13605;Name=yceG;gbkey=Gene;gene=yceG;gene_biotype=protein_coding;locus_tag=C9F05_RS13605;old_locus_tag=C9F05_13995
NZ_PYKE01000209.1	Protein Homology	CDS	34165	35187	.	+	0	ID=cds-WP_000736459.1;Parent=gene-C9F05_RS13605;Dbxref=GenBank:WP_000736459.1;Name=WP_000736459.1;gbkey=CDS;gene=yceG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460169.1;locus_tag=C9F05_RS13605;product=cell division protein YceG;protein_id=WP_000736459.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	35177	35818	.	+	.	ID=gene-C9F05_RS13610;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=C9F05_RS13610;old_locus_tag=C9F05_14000
NZ_PYKE01000209.1	Protein Homology	CDS	35177	35818	.	+	0	ID=cds-WP_000535399.1;Parent=gene-C9F05_RS13610;Dbxref=GenBank:WP_000535399.1;Name=WP_000535399.1;Ontology_term=GO:0006233,GO:0004798,GO:0005524;gbkey=CDS;gene=tmk;go_function=dTMP kinase activity|0004798||IEA,ATP binding|0005524||IEA;go_process=dTDP biosynthetic process|0006233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460170.1;locus_tag=C9F05_RS13610;product=dTMP kinase;protein_id=WP_000535399.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	35815	36819	.	+	.	ID=gene-C9F05_RS13615;Name=holB;gbkey=Gene;gene=holB;gene_biotype=protein_coding;locus_tag=C9F05_RS13615;old_locus_tag=C9F05_14005
NZ_PYKE01000209.1	Protein Homology	CDS	35815	36819	.	+	0	ID=cds-WP_058107545.1;Parent=gene-C9F05_RS13615;Dbxref=GenBank:WP_058107545.1;Name=WP_058107545.1;Ontology_term=GO:0006260,GO:0003887,GO:0008408;gbkey=CDS;gene=holB;go_function=DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460171.1;locus_tag=C9F05_RS13615;product=DNA polymerase III subunit delta';protein_id=WP_058107545.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	36830	37627	.	+	.	ID=gene-C9F05_RS13620;Name=C9F05_RS13620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13620;old_locus_tag=C9F05_14010
NZ_PYKE01000209.1	Protein Homology	CDS	36830	37627	.	+	0	ID=cds-WP_000480268.1;Parent=gene-C9F05_RS13620;Dbxref=GenBank:WP_000480268.1;Name=WP_000480268.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460172.1;locus_tag=C9F05_RS13620;product=metal-dependent hydrolase;protein_id=WP_000480268.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	37922	39355	.	+	.	ID=gene-C9F05_RS13625;Name=ptsG;gbkey=Gene;gene=ptsG;gene_biotype=protein_coding;locus_tag=C9F05_RS13625;old_locus_tag=C9F05_14015
NZ_PYKE01000209.1	Protein Homology	CDS	37922	39355	.	+	0	ID=cds-WP_000475705.1;Parent=gene-C9F05_RS13625;Dbxref=GenBank:WP_000475705.1;Name=WP_000475705.1;Ontology_term=GO:0009401,GO:1904659,GO:0008982,GO:0055056;gbkey=CDS;gene=ptsG;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,D-glucose transmembrane transporter activity|0055056||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,D-glucose transmembrane transport|1904659||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460173.1;locus_tag=C9F05_RS13625;product=PTS glucose transporter subunit IIBC;protein_id=WP_000475705.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	39440	41614	.	-	.	ID=gene-C9F05_RS13630;Name=fhuE;gbkey=Gene;gene=fhuE;gene_biotype=protein_coding;locus_tag=C9F05_RS13630;old_locus_tag=C9F05_14020
NZ_PYKE01000209.1	Protein Homology	CDS	39440	41614	.	-	0	ID=cds-WP_023182047.1;Parent=gene-C9F05_RS13630;Dbxref=GenBank:WP_023182047.1;Name=WP_023182047.1;Ontology_term=GO:0015891,GO:0015344,GO:0038023,GO:0009279;gbkey=CDS;gene=fhuE;go_component=cell outer membrane|0009279||IEA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460174.1;locus_tag=C9F05_RS13630;product=ferric-rhodotorulic acid/ferric-coprogen receptor FhuE;protein_id=WP_023182047.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	41956	42315	.	+	.	ID=gene-C9F05_RS13635;Name=hinT;gbkey=Gene;gene=hinT;gene_biotype=protein_coding;locus_tag=C9F05_RS13635;old_locus_tag=C9F05_14025
NZ_PYKE01000209.1	Protein Homology	CDS	41956	42315	.	+	0	ID=cds-WP_001532068.1;Parent=gene-C9F05_RS13635;Dbxref=GenBank:WP_001532068.1;Name=WP_001532068.1;gbkey=CDS;gene=hinT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460175.1;locus_tag=C9F05_RS13635;product=purine nucleoside phosphoramidase;protein_id=WP_001532068.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	42318	42692	.	+	.	ID=gene-C9F05_RS13640;Name=C9F05_RS13640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13640;old_locus_tag=C9F05_14030
NZ_PYKE01000209.1	Protein Homology	CDS	42318	42692	.	+	0	ID=cds-WP_000589563.1;Parent=gene-C9F05_RS13640;Dbxref=GenBank:WP_000589563.1;Name=WP_000589563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460176.1;locus_tag=C9F05_RS13640;product=YcfL family protein;protein_id=WP_000589563.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	42706	43344	.	+	.	ID=gene-C9F05_RS13645;Name=lpoB;gbkey=Gene;gene=lpoB;gene_biotype=protein_coding;locus_tag=C9F05_RS13645;old_locus_tag=C9F05_14035
NZ_PYKE01000209.1	Protein Homology	CDS	42706	43344	.	+	0	ID=cds-WP_000164359.1;Parent=gene-C9F05_RS13645;Dbxref=GenBank:WP_000164359.1;Name=WP_000164359.1;gbkey=CDS;gene=lpoB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460177.1;locus_tag=C9F05_RS13645;product=penicillin-binding protein activator LpoB;protein_id=WP_000164359.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	43325	44149	.	+	.	ID=gene-C9F05_RS13650;Name=thiK;gbkey=Gene;gene=thiK;gene_biotype=protein_coding;locus_tag=C9F05_RS13650;old_locus_tag=C9F05_14040
NZ_PYKE01000209.1	Protein Homology	CDS	43325	44149	.	+	0	ID=cds-WP_001257320.1;Parent=gene-C9F05_RS13650;Dbxref=GenBank:WP_001257320.1;Name=WP_001257320.1;Ontology_term=GO:0006772,GO:0016310,GO:0019165;gbkey=CDS;gene=thiK;go_function=thiamine kinase activity|0019165||IEA;go_process=thiamine metabolic process|0006772||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460178.1;locus_tag=C9F05_RS13650;product=thiamine kinase;protein_id=WP_001257320.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	44160	45185	.	+	.	ID=gene-C9F05_RS13655;Name=nagZ;gbkey=Gene;gene=nagZ;gene_biotype=protein_coding;locus_tag=C9F05_RS13655;old_locus_tag=C9F05_14045
NZ_PYKE01000209.1	Protein Homology	CDS	44160	45185	.	+	0	ID=cds-WP_000529342.1;Parent=gene-C9F05_RS13655;Dbxref=GenBank:WP_000529342.1;Name=WP_000529342.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=nagZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460179.1;locus_tag=C9F05_RS13655;product=beta-N-acetylhexosaminidase;protein_id=WP_000529342.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	45210	45752	.	+	.	ID=gene-C9F05_RS13660;Name=ycfP;gbkey=Gene;gene=ycfP;gene_biotype=protein_coding;locus_tag=C9F05_RS13660;old_locus_tag=C9F05_14050
NZ_PYKE01000209.1	Protein Homology	CDS	45210	45752	.	+	0	ID=cds-WP_000587945.1;Parent=gene-C9F05_RS13660;Dbxref=GenBank:WP_000587945.1;Name=WP_000587945.1;gbkey=CDS;gene=ycfP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126033.1;locus_tag=C9F05_RS13660;product=alpha/beta hydrolase YcfP;protein_id=WP_000587945.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	46006	47310	.	+	.	ID=gene-C9F05_RS13665;Name=ndh;gbkey=Gene;gene=ndh;gene_biotype=protein_coding;locus_tag=C9F05_RS13665;old_locus_tag=C9F05_14055
NZ_PYKE01000209.1	Protein Homology	CDS	46006	47310	.	+	0	ID=cds-WP_000211053.1;Parent=gene-C9F05_RS13665;Dbxref=GenBank:WP_000211053.1;Name=WP_000211053.1;gbkey=CDS;gene=ndh;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017384716.1;locus_tag=C9F05_RS13665;product=NADH-quinone dehydrogenase;protein_id=WP_000211053.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	47489	48028	.	+	.	ID=gene-C9F05_RS13670;Name=C9F05_RS13670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13670;old_locus_tag=C9F05_14060
NZ_PYKE01000209.1	Protein Homology	CDS	47489	48028	.	+	0	ID=cds-WP_001043449.1;Parent=gene-C9F05_RS13670;Dbxref=GenBank:WP_001043449.1;Name=WP_001043449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460182.1;locus_tag=C9F05_RS13670;product=glycine zipper 2TM domain-containing protein;protein_id=WP_001043449.1;transl_table=11
NZ_PYKE01000209.1	RefSeq	gene	48103	48738	.	-	.	ID=gene-C9F05_RS13675;Name=comR;gbkey=Gene;gene=comR;gene_biotype=protein_coding;locus_tag=C9F05_RS13675;old_locus_tag=C9F05_14065
NZ_PYKE01000209.1	Protein Homology	CDS	48103	48738	.	-	0	ID=cds-WP_135370364.1;Parent=gene-C9F05_RS13675;Dbxref=GenBank:WP_135370364.1;Name=WP_135370364.1;gbkey=CDS;gene=comR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835112.1;locus_tag=C9F05_RS13675;product=TetR family copper-responsive transcriptional repressor ComR;protein_id=WP_135370364.1;transl_table=11
##sequence-region NZ_PYKE01000241.1 1 12016
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000241.1	RefSeq	region	1	12016	.	+	.	ID=NZ_PYKE01000241.1:1..12016;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000241.1	RefSeq	gene	1	1464	.	-	.	ID=gene-C9F05_RS15465;Name=amyA;gbkey=Gene;gene=amyA;gene_biotype=protein_coding;locus_tag=C9F05_RS15465;old_locus_tag=C9F05_15900;partial=true;start_range=.,1
NZ_PYKE01000241.1	Protein Homology	CDS	1	1464	.	-	0	ID=cds-WP_135370439.1;Parent=gene-C9F05_RS15465;Dbxref=GenBank:WP_135370439.1;Name=WP_135370439.1;Ontology_term=GO:0005975,GO:0004553,GO:0005509;gbkey=CDS;gene=amyA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,calcium ion binding|0005509||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460916.1;locus_tag=C9F05_RS15465;partial=true;product=alpha-amylase;protein_id=WP_135370439.1;start_range=.,1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	1536	1904	.	-	.	ID=gene-C9F05_RS15470;Name=fliT;gbkey=Gene;gene=fliT;gene_biotype=protein_coding;locus_tag=C9F05_RS15470;old_locus_tag=C9F05_15905
NZ_PYKE01000241.1	Protein Homology	CDS	1536	1904	.	-	0	ID=cds-WP_000204899.1;Parent=gene-C9F05_RS15470;Dbxref=GenBank:WP_000204899.1;Name=WP_000204899.1;Ontology_term=GO:0006605,GO:0044780,GO:1902209;gbkey=CDS;gene=fliT;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA,negative regulation of bacterial-type flagellum assembly|1902209||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460915.1;locus_tag=C9F05_RS15470;product=flagella biosynthesis regulatory protein FliT;protein_id=WP_000204899.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	1904	2311	.	-	.	ID=gene-C9F05_RS15475;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=C9F05_RS15475;old_locus_tag=C9F05_15910
NZ_PYKE01000241.1	Protein Homology	CDS	1904	2311	.	-	0	ID=cds-WP_000287760.1;Parent=gene-C9F05_RS15475;Dbxref=GenBank:WP_000287760.1;Name=WP_000287760.1;Ontology_term=GO:0044780;gbkey=CDS;gene=fliS;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460914.1;locus_tag=C9F05_RS15475;product=flagellar export chaperone FliS;protein_id=WP_000287760.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	2326	3732	.	-	.	ID=gene-C9F05_RS15480;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=C9F05_RS15480;old_locus_tag=C9F05_15915
NZ_PYKE01000241.1	Protein Homology	CDS	2326	3732	.	-	0	ID=cds-WP_079966998.1;Parent=gene-C9F05_RS15480;Dbxref=GenBank:WP_079966998.1;Name=WP_079966998.1;Ontology_term=GO:0007155,GO:0009288,GO:0009421;gbkey=CDS;gene=fliD;go_component=bacterial-type flagellum|0009288||IEA,bacterial-type flagellum filament cap|0009421||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460913.1;locus_tag=C9F05_RS15480;product=flagellar filament capping protein FliD;protein_id=WP_079966998.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	3731	3970	.	+	.	ID=gene-C9F05_RS15485;Name=C9F05_RS15485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15485;old_locus_tag=C9F05_15920
NZ_PYKE01000241.1	GeneMarkS-2+	CDS	3731	3970	.	+	0	ID=cds-WP_001141165.1;Parent=gene-C9F05_RS15485;Dbxref=GenBank:WP_001141165.1;Name=WP_001141165.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS15485;product=hypothetical protein;protein_id=WP_001141165.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	3988	5505	.	+	.	ID=gene-C9F05_RS15490;Name=C9F05_RS15490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15490;old_locus_tag=C9F05_15925
NZ_PYKE01000241.1	Protein Homology	CDS	3988	5505	.	+	0	ID=cds-WP_080111220.1;Parent=gene-C9F05_RS15490;Dbxref=GenBank:WP_080111220.1;Name=WP_080111220.1;Ontology_term=GO:0071973,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000079837.1;locus_tag=C9F05_RS15490;product=flagellin N-terminal helical domain-containing protein;protein_id=WP_080111220.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	5584	6789	.	+	.	ID=gene-C9F05_RS15495;Name=fliB;gbkey=Gene;gene=fliB;gene_biotype=protein_coding;locus_tag=C9F05_RS15495;old_locus_tag=C9F05_15930
NZ_PYKE01000241.1	Protein Homology	CDS	5584	6789	.	+	0	ID=cds-WP_135370440.1;Parent=gene-C9F05_RS15495;Dbxref=GenBank:WP_135370440.1;Name=WP_135370440.1;gbkey=CDS;gene=fliB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460911.1;locus_tag=C9F05_RS15495;product=flagellin lysine-N-methylase;protein_id=WP_135370440.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	6986	7705	.	+	.	ID=gene-C9F05_RS15500;Name=C9F05_RS15500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15500;old_locus_tag=C9F05_15935
NZ_PYKE01000241.1	Protein Homology	CDS	6986	7705	.	+	0	ID=cds-WP_001087453.1;Parent=gene-C9F05_RS15500;Dbxref=GenBank:WP_001087453.1;Name=WP_001087453.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003899,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460909.1;locus_tag=C9F05_RS15500;product=RNA polymerase sigma factor FliA;protein_id=WP_001087453.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	7764	8315	.	+	.	ID=gene-C9F05_RS15505;Name=fliZ;gbkey=Gene;gene=fliZ;gene_biotype=protein_coding;locus_tag=C9F05_RS15505;old_locus_tag=C9F05_15940
NZ_PYKE01000241.1	Protein Homology	CDS	7764	8315	.	+	0	ID=cds-WP_000218080.1;Parent=gene-C9F05_RS15505;Dbxref=GenBank:WP_000218080.1;Name=WP_000218080.1;gbkey=CDS;gene=fliZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460908.1;locus_tag=C9F05_RS15505;product=flagella biosynthesis regulatory protein FliZ;protein_id=WP_000218080.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	8462	9262	.	+	.	ID=gene-C9F05_RS15510;Name=tcyJ;gbkey=Gene;gene=tcyJ;gene_biotype=protein_coding;locus_tag=C9F05_RS15510;old_locus_tag=C9F05_15945
NZ_PYKE01000241.1	Protein Homology	CDS	8462	9262	.	+	0	ID=cds-WP_000761634.1;Parent=gene-C9F05_RS15510;Dbxref=GenBank:WP_000761634.1;Name=WP_000761634.1;Ontology_term=GO:0015276,GO:0016020;gbkey=CDS;gene=tcyJ;go_component=membrane|0016020||IEA;go_function=ligand-gated monoatomic ion channel activity|0015276||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460907.1;locus_tag=C9F05_RS15510;product=cystine ABC transporter substrate-binding protein;protein_id=WP_000761634.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	9416	10402	.	+	.	ID=gene-C9F05_RS15515;Name=dcyD;gbkey=Gene;gene=dcyD;gene_biotype=protein_coding;locus_tag=C9F05_RS15515;old_locus_tag=C9F05_15950
NZ_PYKE01000241.1	Protein Homology	CDS	9416	10402	.	+	0	ID=cds-WP_001128188.1;Parent=gene-C9F05_RS15515;Dbxref=GenBank:WP_001128188.1;Name=WP_001128188.1;Ontology_term=GO:0019148;gbkey=CDS;gene=dcyD;go_function=D-cysteine desulfhydrase activity|0019148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460906.1;locus_tag=C9F05_RS15515;product=D-cysteine desulfhydrase;protein_id=WP_001128188.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	10423	11091	.	+	.	ID=gene-C9F05_RS15520;Name=tcyL;gbkey=Gene;gene=tcyL;gene_biotype=protein_coding;locus_tag=C9F05_RS15520;old_locus_tag=C9F05_15955
NZ_PYKE01000241.1	Protein Homology	CDS	10423	11091	.	+	0	ID=cds-WP_001158238.1;Parent=gene-C9F05_RS15520;Dbxref=GenBank:WP_001158238.1;Name=WP_001158238.1;gbkey=CDS;gene=tcyL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460905.1;locus_tag=C9F05_RS15520;product=cystine ABC transporter permease;protein_id=WP_001158238.1;transl_table=11
NZ_PYKE01000241.1	RefSeq	gene	11088	11840	.	+	.	ID=gene-C9F05_RS15525;Name=tcyN;gbkey=Gene;gene=tcyN;gene_biotype=protein_coding;locus_tag=C9F05_RS15525;old_locus_tag=C9F05_15960
NZ_PYKE01000241.1	Protein Homology	CDS	11088	11840	.	+	0	ID=cds-WP_001273033.1;Parent=gene-C9F05_RS15525;Dbxref=GenBank:WP_001273033.1;Name=WP_001273033.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424;gbkey=CDS;gene=tcyN;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460904.1;locus_tag=C9F05_RS15525;product=L-cystine ABC transporter ATP-binding protein TcyN;protein_id=WP_001273033.1;transl_table=11
##sequence-region NZ_PYKE01000307.1 1 11932
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000307.1	RefSeq	region	1	11932	.	+	.	ID=NZ_PYKE01000307.1:1..11932;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000307.1	RefSeq	gene	180	1724	.	-	.	ID=gene-C9F05_RS20740;Name=cadC;gbkey=Gene;gene=cadC;gene_biotype=protein_coding;locus_tag=C9F05_RS20740;old_locus_tag=C9F05_21320
NZ_PYKE01000307.1	Protein Homology	CDS	180	1724	.	-	0	ID=cds-WP_080163564.1;Parent=gene-C9F05_RS20740;Dbxref=GenBank:WP_080163564.1;Name=WP_080163564.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=cadC;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461492.1;locus_tag=C9F05_RS20740;product=lysine decarboxylation/transport transcriptional activator CadC;protein_id=WP_080163564.1;transl_table=11
NZ_PYKE01000307.1	RefSeq	gene	1906	3096	.	-	.	ID=gene-C9F05_RS20745;Name=hmpA;gbkey=Gene;gene=hmpA;gene_biotype=protein_coding;locus_tag=C9F05_RS20745;old_locus_tag=C9F05_21325
NZ_PYKE01000307.1	Protein Homology	CDS	1906	3096	.	-	0	ID=cds-WP_000883146.1;Parent=gene-C9F05_RS20745;Dbxref=GenBank:WP_000883146.1;Name=WP_000883146.1;Ontology_term=GO:0051409,GO:0008941,GO:0019825,GO:0020037,GO:0071949;gbkey=CDS;gene=hmpA;go_function=nitric oxide dioxygenase NAD(P)H activity|0008941||IEA,oxygen binding|0019825||IEA,heme binding|0020037||IEA,FAD binding|0071949||IEA;go_process=response to nitrosative stress|0051409||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461491.1;locus_tag=C9F05_RS20745;product=NO-inducible flavohemoprotein;protein_id=WP_000883146.1;transl_table=11
NZ_PYKE01000307.1	RefSeq	gene	3421	4674	.	+	.	ID=gene-C9F05_RS20750;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=C9F05_RS20750;old_locus_tag=C9F05_21330
NZ_PYKE01000307.1	Protein Homology	CDS	3421	4674	.	+	0	ID=cds-WP_000919178.1;Parent=gene-C9F05_RS20750;Dbxref=GenBank:WP_000919178.1;Name=WP_000919178.1;Ontology_term=GO:0019264,GO:0004372,GO:0008270,GO:0030170,GO:0070905;gbkey=CDS;gene=glyA;go_function=glycine hydroxymethyltransferase activity|0004372||IEA,zinc ion binding|0008270||IEA,pyridoxal phosphate binding|0030170||IEA,serine binding|0070905||IEA;go_process=glycine biosynthetic process from serine|0019264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019077397.1;locus_tag=C9F05_RS20750;product=serine hydroxymethyltransferase;protein_id=WP_000919178.1;transl_table=11
NZ_PYKE01000307.1	RefSeq	gene	4870	6009	.	+	.	ID=gene-C9F05_RS20755;Name=C9F05_RS20755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20755;old_locus_tag=C9F05_21335
NZ_PYKE01000307.1	Protein Homology	CDS	4870	6009	.	+	0	ID=cds-WP_001173729.1;Parent=gene-C9F05_RS20755;Dbxref=GenBank:WP_001173729.1;Name=WP_001173729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461489.1;locus_tag=C9F05_RS20755;product=3-phenylpropionate MFS transporter;protein_id=WP_001173729.1;transl_table=11
NZ_PYKE01000307.1	RefSeq	gene	6004	7281	.	-	.	ID=gene-C9F05_RS20760;Name=csiE;gbkey=Gene;gene=csiE;gene_biotype=protein_coding;locus_tag=C9F05_RS20760;old_locus_tag=C9F05_21340
NZ_PYKE01000307.1	Protein Homology	CDS	6004	7281	.	-	0	ID=cds-WP_135370601.1;Parent=gene-C9F05_RS20760;Dbxref=GenBank:WP_135370601.1;Name=WP_135370601.1;gbkey=CDS;gene=csiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461488.1;locus_tag=C9F05_RS20760;product=stationary phase inducible protein CsiE;protein_id=WP_135370601.1;transl_table=11
NZ_PYKE01000307.1	RefSeq	gene	7407	8045	.	+	.	ID=gene-C9F05_RS20765;Name=C9F05_RS20765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20765;old_locus_tag=C9F05_21345
NZ_PYKE01000307.1	Protein Homology	CDS	7407	8045	.	+	0	ID=cds-WP_000805728.1;Parent=gene-C9F05_RS20765;Dbxref=GenBank:WP_000805728.1;Name=WP_000805728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461487.1;locus_tag=C9F05_RS20765;product=DUF1007 family protein;protein_id=WP_000805728.1;transl_table=11
NZ_PYKE01000307.1	RefSeq	gene	8036	9022	.	+	.	ID=gene-C9F05_RS20770;Name=C9F05_RS20770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20770;old_locus_tag=C9F05_21350
NZ_PYKE01000307.1	Protein Homology	CDS	8036	9022	.	+	0	ID=cds-WP_023993587.1;Parent=gene-C9F05_RS20770;Dbxref=GenBank:WP_023993587.1;Name=WP_023993587.1;Ontology_term=GO:0035444,GO:0015099,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=nickel cation transmembrane transporter activity|0015099||IEA;go_process=nickel cation transmembrane transport|0035444||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461486.1;locus_tag=C9F05_RS20770;product=nickel/cobalt transporter;protein_id=WP_023993587.1;transl_table=11
NZ_PYKE01000307.1	RefSeq	gene	9023	10036	.	-	.	ID=gene-C9F05_RS20775;Name=asrC;gbkey=Gene;gene=asrC;gene_biotype=protein_coding;locus_tag=C9F05_RS20775;old_locus_tag=C9F05_21355
NZ_PYKE01000307.1	Protein Homology	CDS	9023	10036	.	-	0	ID=cds-WP_023993588.1;Parent=gene-C9F05_RS20775;Dbxref=GenBank:WP_023993588.1;Name=WP_023993588.1;Ontology_term=GO:0006790,GO:0016002;gbkey=CDS;gene=asrC;go_function=sulfite reductase activity|0016002||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461485.1;locus_tag=C9F05_RS20775;product=sulfite reductase subunit C;protein_id=WP_023993588.1;transl_table=11
NZ_PYKE01000307.1	RefSeq	gene	10047	10865	.	-	.	ID=gene-C9F05_RS20780;Name=asrB;gbkey=Gene;gene=asrB;gene_biotype=protein_coding;locus_tag=C9F05_RS20780;old_locus_tag=C9F05_21360
NZ_PYKE01000307.1	Protein Homology	CDS	10047	10865	.	-	0	ID=cds-WP_000017587.1;Parent=gene-C9F05_RS20780;Dbxref=GenBank:WP_000017587.1;Name=WP_000017587.1;Ontology_term=GO:0006790,GO:0009055,GO:0016002;gbkey=CDS;gene=asrB;go_function=electron transfer activity|0009055||IEA,sulfite reductase activity|0016002||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461484.1;locus_tag=C9F05_RS20780;product=anaerobic sulfite reductase subunit AsrB;protein_id=WP_000017587.1;transl_table=11
NZ_PYKE01000307.1	RefSeq	gene	10869	11912	.	-	.	ID=gene-C9F05_RS20785;Name=asrA;gbkey=Gene;gene=asrA;gene_biotype=protein_coding;locus_tag=C9F05_RS20785;old_locus_tag=C9F05_21365
NZ_PYKE01000307.1	Protein Homology	CDS	10869	11912	.	-	0	ID=cds-WP_000985204.1;Parent=gene-C9F05_RS20785;Dbxref=GenBank:WP_000985204.1;Name=WP_000985204.1;Ontology_term=GO:0006790,GO:0009055,GO:0016002;gbkey=CDS;gene=asrA;go_function=electron transfer activity|0009055||IEA,sulfite reductase activity|0016002||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461483.1;locus_tag=C9F05_RS20785;product=anaerobic sulfite reductase subunit AsrA;protein_id=WP_000985204.1;transl_table=11
##sequence-region NZ_PYKE01000214.1 1 11885
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000214.1	RefSeq	region	1	11885	.	+	.	ID=NZ_PYKE01000214.1:1..11885;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000214.1	RefSeq	gene	1	2250	.	+	.	ID=gene-C9F05_RS13815;Name=glnE;gbkey=Gene;gene=glnE;gene_biotype=protein_coding;locus_tag=C9F05_RS13815;old_locus_tag=C9F05_14210;partial=true;start_range=.,1
NZ_PYKE01000214.1	Protein Homology	CDS	1	2250	.	+	0	ID=cds-WP_135370371.1;Parent=gene-C9F05_RS13815;Dbxref=GenBank:WP_135370371.1;Name=WP_135370371.1;Ontology_term=GO:0008882;gbkey=CDS;gene=glnE;go_function=[glutamate-ammonia-ligase] adenylyltransferase activity|0008882||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462116.1;locus_tag=C9F05_RS13815;partial=true;product=bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase;protein_id=WP_135370371.1;start_range=.,1;transl_table=11
NZ_PYKE01000214.1	RefSeq	gene	2298	3731	.	+	.	ID=gene-C9F05_RS13820;Name=hldE;gbkey=Gene;gene=hldE;gene_biotype=protein_coding;locus_tag=C9F05_RS13820;old_locus_tag=C9F05_14215
NZ_PYKE01000214.1	Protein Homology	CDS	2298	3731	.	+	0	ID=cds-WP_135370372.1;Parent=gene-C9F05_RS13820;Dbxref=GenBank:WP_135370372.1;Name=WP_135370372.1;Ontology_term=GO:0005975,GO:0009058,GO:0016779;gbkey=CDS;gene=hldE;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=carbohydrate metabolic process|0005975||IEA,biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462115.1;locus_tag=C9F05_RS13820;product=bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE;protein_id=WP_135370372.1;transl_table=11
NZ_PYKE01000214.1	RefSeq	gene	3891	3950	.	-	.	ID=gene-C9F05_RS23690;Name=C9F05_RS23690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23690
NZ_PYKE01000214.1	Protein Homology	CDS	3891	3950	.	-	0	ID=cds-WP_001804776.1;Parent=gene-C9F05_RS23690;Dbxref=GenBank:WP_001804776.1;Name=WP_001804776.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791255.1;locus_tag=C9F05_RS23690;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_001804776.1;transl_table=11
NZ_PYKE01000214.1	RefSeq	gene	4189	5868	.	-	.	ID=gene-C9F05_RS13830;Name=C9F05_RS13830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13830;old_locus_tag=C9F05_14225
NZ_PYKE01000214.1	Protein Homology	CDS	4189	5868	.	-	0	ID=cds-WP_031604990.1;Parent=gene-C9F05_RS13830;Dbxref=GenBank:WP_031604990.1;Name=WP_031604990.1;Ontology_term=GO:0016020,GO:0016600;gbkey=CDS;go_component=membrane|0016020||IEA,flotillin complex|0016600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462114.1;locus_tag=C9F05_RS13830;product=flotillin family protein;protein_id=WP_031604990.1;transl_table=11
NZ_PYKE01000214.1	RefSeq	gene	5887	6507	.	-	.	ID=gene-C9F05_RS13835;Name=C9F05_RS13835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13835;old_locus_tag=C9F05_14230
NZ_PYKE01000214.1	Protein Homology	CDS	5887	6507	.	-	0	ID=cds-WP_000171739.1;Parent=gene-C9F05_RS13835;Dbxref=GenBank:WP_000171739.1;Name=WP_000171739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462113.1;locus_tag=C9F05_RS13835;product=OB-fold-containig protein;protein_id=WP_000171739.1;transl_table=11
NZ_PYKE01000214.1	RefSeq	gene	6765	6974	.	+	.	ID=gene-C9F05_RS13840;Name=glgS;gbkey=Gene;gene=glgS;gene_biotype=protein_coding;locus_tag=C9F05_RS13840;old_locus_tag=C9F05_14235
NZ_PYKE01000214.1	Protein Homology	CDS	6765	6974	.	+	0	ID=cds-WP_000928927.1;Parent=gene-C9F05_RS13840;Dbxref=GenBank:WP_000928927.1;Name=WP_000928927.1;gbkey=CDS;gene=glgS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462112.1;locus_tag=C9F05_RS13840;product=cell surface composition regulator GlgS;protein_id=WP_000928927.1;transl_table=11
NZ_PYKE01000214.1	RefSeq	gene	7049	7345	.	-	.	ID=gene-C9F05_RS13845;Name=ubiK;gbkey=Gene;gene=ubiK;gene_biotype=protein_coding;gene_synonym=yqiC;locus_tag=C9F05_RS13845;old_locus_tag=C9F05_14240
NZ_PYKE01000214.1	Protein Homology	CDS	7049	7345	.	-	0	ID=cds-WP_000566824.1;Parent=gene-C9F05_RS13845;Dbxref=GenBank:WP_000566824.1;Name=WP_000566824.1;Ontology_term=GO:0006744,GO:0042802;gbkey=CDS;gene=ubiK;go_function=identical protein binding|0042802||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000566826.1;locus_tag=C9F05_RS13845;product=ubiquinone biosynthesis accessory factor UbiK;protein_id=WP_000566824.1;transl_table=11
NZ_PYKE01000214.1	cmsearch	riboswitch	7478	7676	.	+	.	ID=id-NZ_PYKE01000214.1:7478..7676;Dbxref=RFAM:RF00050;Note=FMN riboswitch;bound_moiety=flavin mononucleotide;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYKE01000214.1	RefSeq	gene	7782	8435	.	+	.	ID=gene-C9F05_RS13850;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=C9F05_RS13850;old_locus_tag=C9F05_14245
NZ_PYKE01000214.1	Protein Homology	CDS	7782	8435	.	+	0	ID=cds-WP_001076978.1;Parent=gene-C9F05_RS13850;Dbxref=GenBank:WP_001076978.1;Name=WP_001076978.1;Ontology_term=GO:0008686;gbkey=CDS;gene=ribB;go_function=3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity|0008686||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462110.1;locus_tag=C9F05_RS13850;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=WP_001076978.1;transl_table=11
NZ_PYKE01000214.1	RefSeq	gene	8606	9283	.	-	.	ID=gene-C9F05_RS13855;Name=dsbI;gbkey=Gene;gene=dsbI;gene_biotype=protein_coding;locus_tag=C9F05_RS13855;old_locus_tag=C9F05_14250
NZ_PYKE01000214.1	Protein Homology	CDS	8606	9283	.	-	0	ID=cds-WP_000345576.1;Parent=gene-C9F05_RS13855;Dbxref=GenBank:WP_000345576.1;Name=WP_000345576.1;gbkey=CDS;gene=dsbI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462109.1;locus_tag=C9F05_RS13855;product=protein-disulfide oxidoreductase DsbI;protein_id=WP_000345576.1;transl_table=11
NZ_PYKE01000214.1	RefSeq	gene	9298	9969	.	-	.	ID=gene-C9F05_RS13860;Name=C9F05_RS13860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13860;old_locus_tag=C9F05_14255
NZ_PYKE01000214.1	Protein Homology	CDS	9298	9969	.	-	0	ID=cds-WP_000096230.1;Parent=gene-C9F05_RS13860;Dbxref=GenBank:WP_000096230.1;Name=WP_000096230.1;Ontology_term=GO:0015035;gbkey=CDS;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462108.1;locus_tag=C9F05_RS13860;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=WP_000096230.1;transl_table=11
NZ_PYKE01000214.1	RefSeq	gene	9989	11785	.	-	.	ID=gene-C9F05_RS13865;Name=C9F05_RS13865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13865;old_locus_tag=C9F05_14260
NZ_PYKE01000214.1	Protein Homology	CDS	9989	11785	.	-	0	ID=cds-WP_000460265.1;Parent=gene-C9F05_RS13865;Dbxref=GenBank:WP_000460265.1;Name=WP_000460265.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016159766.1;locus_tag=C9F05_RS13865;product=aryl-sulfate sulfotransferase;protein_id=WP_000460265.1;transl_table=11
##sequence-region NZ_PYKE01000081.1 1 11833
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000081.1	RefSeq	region	1	11833	.	+	.	ID=NZ_PYKE01000081.1:1..11833;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000081.1	RefSeq	gene	145	3141	.	-	.	ID=gene-C9F05_RS05515;Name=C9F05_RS05515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05515;old_locus_tag=C9F05_05610
NZ_PYKE01000081.1	Protein Homology	CDS	145	3141	.	-	0	ID=cds-WP_135370095.1;Parent=gene-C9F05_RS05515;Dbxref=GenBank:WP_135370095.1;Name=WP_135370095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459024.1;locus_tag=C9F05_RS05515;product=chitinase;protein_id=WP_135370095.1;transl_table=11
NZ_PYKE01000081.1	RefSeq	gene	3234	5339	.	-	.	ID=gene-C9F05_RS05520;Name=C9F05_RS05520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05520;old_locus_tag=C9F05_05615
NZ_PYKE01000081.1	Protein Homology	CDS	3234	5339	.	-	0	ID=cds-WP_135370096.1;Parent=gene-C9F05_RS05520;Dbxref=GenBank:WP_135370096.1;Name=WP_135370096.1;Ontology_term=GO:0005975;gbkey=CDS;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459023.1;locus_tag=C9F05_RS05520;product=glycosyl hydrolase family 18 protein;protein_id=WP_135370096.1;transl_table=11
NZ_PYKE01000081.1	RefSeq	gene	5720	6163	.	+	.	ID=gene-C9F05_RS05525;Name=C9F05_RS05525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05525;old_locus_tag=C9F05_05620
NZ_PYKE01000081.1	Protein Homology	CDS	5720	6163	.	+	0	ID=cds-WP_000860681.1;Parent=gene-C9F05_RS05525;Dbxref=GenBank:WP_000860681.1;Name=WP_000860681.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459022.1;locus_tag=C9F05_RS05525;product=winged helix-turn-helix domain-containing protein;protein_id=WP_000860681.1;transl_table=11
NZ_PYKE01000081.1	RefSeq	gene	6180	6713	.	+	.	ID=gene-C9F05_RS05530;Name=C9F05_RS05530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05530;old_locus_tag=C9F05_05625
NZ_PYKE01000081.1	Protein Homology	CDS	6180	6713	.	+	0	ID=cds-WP_001068132.1;Parent=gene-C9F05_RS05530;Dbxref=GenBank:WP_001068132.1;Name=WP_001068132.1;Ontology_term=GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459021.1;locus_tag=C9F05_RS05530;product=glycoside hydrolase family 108 protein;protein_id=WP_001068132.1;transl_table=11
NZ_PYKE01000081.1	RefSeq	gene	6774	7118	.	-	.	ID=gene-C9F05_RS05535;Name=C9F05_RS05535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05535;old_locus_tag=C9F05_05630
NZ_PYKE01000081.1	Protein Homology	CDS	6774	7118	.	-	0	ID=cds-WP_000026889.1;Parent=gene-C9F05_RS05535;Dbxref=GenBank:WP_000026889.1;Name=WP_000026889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459020.1;locus_tag=C9F05_RS05535;product=phage holin family protein;protein_id=WP_000026889.1;transl_table=11
NZ_PYKE01000081.1	RefSeq	gene	7245	8192	.	-	.	ID=gene-C9F05_RS05540;Name=C9F05_RS05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05540;old_locus_tag=C9F05_05635
NZ_PYKE01000081.1	Protein Homology	CDS	7245	8192	.	-	0	ID=cds-WP_000534911.1;Parent=gene-C9F05_RS05540;Dbxref=GenBank:WP_000534911.1;Name=WP_000534911.1;Ontology_term=GO:0001216,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459019.1;locus_tag=C9F05_RS05540;product=LysR family transcriptional regulator;protein_id=WP_000534911.1;transl_table=11
NZ_PYKE01000081.1	RefSeq	gene	8473	9612	.	-	.	ID=gene-C9F05_RS05545;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=C9F05_RS05545;old_locus_tag=C9F05_05640
NZ_PYKE01000081.1	Protein Homology	CDS	8473	9612	.	-	0	ID=cds-WP_001119009.1;Parent=gene-C9F05_RS05545;Dbxref=GenBank:WP_001119009.1;Name=WP_001119009.1;Ontology_term=GO:0006457,GO:0009408,GO:0005515,GO:0005524;gbkey=CDS;gene=dnaJ;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=protein folding|0006457||IEA,response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459018.1;locus_tag=C9F05_RS05545;product=molecular chaperone DnaJ;protein_id=WP_001119009.1;transl_table=11
NZ_PYKE01000081.1	RefSeq	gene	9698	11614	.	-	.	ID=gene-C9F05_RS05550;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=C9F05_RS05550;old_locus_tag=C9F05_05645
NZ_PYKE01000081.1	Protein Homology	CDS	9698	11614	.	-	0	ID=cds-WP_000516126.1;Parent=gene-C9F05_RS05550;Dbxref=GenBank:WP_000516126.1;Name=WP_000516126.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001737966.1;locus_tag=C9F05_RS05550;product=molecular chaperone DnaK;protein_id=WP_000516126.1;transl_table=11
##sequence-region NZ_PYKE01000218.1 1 47938
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000218.1	RefSeq	region	1	47938	.	+	.	ID=NZ_PYKE01000218.1:1..47938;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000218.1	RefSeq	gene	1	130	.	-	.	ID=gene-C9F05_RS13985;Name=C9F05_RS13985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13985;old_locus_tag=C9F05_14385;partial=true;start_range=.,1
NZ_PYKE01000218.1	Protein Homology	CDS	1	130	.	-	0	ID=cds-WP_135370389.1;Parent=gene-C9F05_RS13985;Dbxref=GenBank:WP_135370389.1;Name=WP_135370389.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000697757.1;locus_tag=C9F05_RS13985;partial=true;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_135370389.1;start_range=.,1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	165	1478	.	-	.	ID=gene-C9F05_RS13990;Name=rfbH;gbkey=Gene;gene=rfbH;gene_biotype=protein_coding;locus_tag=C9F05_RS13990;old_locus_tag=C9F05_14390
NZ_PYKE01000218.1	Protein Homology	CDS	165	1478	.	-	0	ID=cds-WP_000126351.1;Parent=gene-C9F05_RS13990;Dbxref=GenBank:WP_000126351.1;Name=WP_000126351.1;Ontology_term=GO:0003824;gbkey=CDS;gene=rfbH;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461035.1;locus_tag=C9F05_RS13990;product=lipopolysaccharide biosynthesis protein RfbH;protein_id=WP_000126351.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	1505	2584	.	-	.	ID=gene-C9F05_RS13995;Name=rfbG;gbkey=Gene;gene=rfbG;gene_biotype=protein_coding;locus_tag=C9F05_RS13995;old_locus_tag=C9F05_14395
NZ_PYKE01000218.1	Protein Homology	CDS	1505	2584	.	-	0	ID=cds-WP_135370390.1;Parent=gene-C9F05_RS13995;Dbxref=GenBank:WP_135370390.1;Name=WP_135370390.1;Ontology_term=GO:0009243,GO:0047733;gbkey=CDS;gene=rfbG;go_function=CDP-glucose 4%2C6-dehydratase activity|0047733||IEA;go_process=O antigen biosynthetic process|0009243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461036.1;locus_tag=C9F05_RS13995;product=CDP-glucose 4%2C6-dehydratase;protein_id=WP_135370390.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	2589	3362	.	-	.	ID=gene-C9F05_RS14000;Name=rfbF;gbkey=Gene;gene=rfbF;gene_biotype=protein_coding;locus_tag=C9F05_RS14000;old_locus_tag=C9F05_14400
NZ_PYKE01000218.1	Protein Homology	CDS	2589	3362	.	-	0	ID=cds-WP_000648783.1;Parent=gene-C9F05_RS14000;Dbxref=GenBank:WP_000648783.1;Name=WP_000648783.1;Ontology_term=GO:0009243,GO:0047343;gbkey=CDS;gene=rfbF;go_function=glucose-1-phosphate cytidylyltransferase activity|0047343||IEA;go_process=O antigen biosynthetic process|0009243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461037.1;locus_tag=C9F05_RS14000;product=glucose-1-phosphate cytidylyltransferase;protein_id=WP_000648783.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	pseudogene	3359	4352	.	-	.	ID=gene-C9F05_RS14005;Name=C9F05_RS14005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS14005;old_locus_tag=C9F05_14405;pseudo=true
NZ_PYKE01000218.1	Protein Homology	CDS	3359	4352	.	-	0	ID=cds-C9F05_RS14005;Parent=gene-C9F05_RS14005;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461038.1;locus_tag=C9F05_RS14005;product=CDP-6-deoxy-delta-3%2C4-glucoseen reductase;pseudo=true;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	4358	4909	.	-	.	ID=gene-C9F05_RS14010;Name=rfbC;gbkey=Gene;gene=rfbC;gene_biotype=protein_coding;locus_tag=C9F05_RS14010;old_locus_tag=C9F05_14410
NZ_PYKE01000218.1	Protein Homology	CDS	4358	4909	.	-	0	ID=cds-WP_077914013.1;Parent=gene-C9F05_RS14010;Dbxref=GenBank:WP_077914013.1;Name=WP_077914013.1;Ontology_term=GO:0019305,GO:0008830;gbkey=CDS;gene=rfbC;go_function=dTDP-4-dehydrorhamnose 3%2C5-epimerase activity|0008830||IEA;go_process=dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461039.1;locus_tag=C9F05_RS14010;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=WP_077914013.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	4910	5788	.	-	.	ID=gene-C9F05_RS14015;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;locus_tag=C9F05_RS14015;old_locus_tag=C9F05_14415
NZ_PYKE01000218.1	Protein Homology	CDS	4910	5788	.	-	0	ID=cds-WP_126523980.1;Parent=gene-C9F05_RS14015;Dbxref=GenBank:WP_126523980.1;Name=WP_126523980.1;Ontology_term=GO:0000271,GO:0008879;gbkey=CDS;gene=rfbA;go_function=glucose-1-phosphate thymidylyltransferase activity|0008879||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461040.1;locus_tag=C9F05_RS14015;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_126523980.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	5836	6735	.	-	.	ID=gene-C9F05_RS14020;Name=rfbD;gbkey=Gene;gene=rfbD;gene_biotype=protein_coding;locus_tag=C9F05_RS14020;old_locus_tag=C9F05_14420
NZ_PYKE01000218.1	Protein Homology	CDS	5836	6735	.	-	0	ID=cds-WP_001023662.1;Parent=gene-C9F05_RS14020;Dbxref=GenBank:WP_001023662.1;Name=WP_001023662.1;gbkey=CDS;gene=rfbD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461041.1;locus_tag=C9F05_RS14020;product=dTDP-4-dehydrorhamnose reductase;protein_id=WP_001023662.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	6735	7820	.	-	.	ID=gene-C9F05_RS14025;Name=rfbB;gbkey=Gene;gene=rfbB;gene_biotype=protein_coding;locus_tag=C9F05_RS14025;old_locus_tag=C9F05_14425
NZ_PYKE01000218.1	Protein Homology	CDS	6735	7820	.	-	0	ID=cds-WP_135370391.1;Parent=gene-C9F05_RS14025;Dbxref=GenBank:WP_135370391.1;Name=WP_135370391.1;Ontology_term=GO:0009225,GO:0019305,GO:0008460;gbkey=CDS;gene=rfbB;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461042.1;locus_tag=C9F05_RS14025;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_135370391.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	8196	9089	.	-	.	ID=gene-C9F05_RS14030;Name=galF;gbkey=Gene;gene=galF;gene_biotype=protein_coding;locus_tag=C9F05_RS14030;old_locus_tag=C9F05_14430
NZ_PYKE01000218.1	Protein Homology	CDS	8196	9089	.	-	0	ID=cds-WP_109273138.1;Parent=gene-C9F05_RS14030;Dbxref=GenBank:WP_109273138.1;Name=WP_109273138.1;Ontology_term=GO:0006011,GO:0030234;gbkey=CDS;gene=galF;go_function=enzyme regulator activity|0030234||IEA;go_process=UDP-alpha-D-glucose metabolic process|0006011||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461043.1;locus_tag=C9F05_RS14030;product=GalU regulator GalF;protein_id=WP_109273138.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	9267	10670	.	-	.	ID=gene-C9F05_RS14035;Name=wcaM;gbkey=Gene;gene=wcaM;gene_biotype=protein_coding;locus_tag=C9F05_RS14035;old_locus_tag=C9F05_14435
NZ_PYKE01000218.1	Protein Homology	CDS	9267	10670	.	-	0	ID=cds-WP_023224545.1;Parent=gene-C9F05_RS14035;Dbxref=GenBank:WP_023224545.1;Name=WP_023224545.1;gbkey=CDS;gene=wcaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461044.1;locus_tag=C9F05_RS14035;product=colanic acid biosynthesis protein WcaM;protein_id=WP_023224545.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	10681	11901	.	-	.	ID=gene-C9F05_RS14040;Name=wcaL;gbkey=Gene;gene=wcaL;gene_biotype=protein_coding;locus_tag=C9F05_RS14040;old_locus_tag=C9F05_14440
NZ_PYKE01000218.1	Protein Homology	CDS	10681	11901	.	-	0	ID=cds-WP_069722191.1;Parent=gene-C9F05_RS14040;Dbxref=GenBank:WP_069722191.1;Name=WP_069722191.1;Ontology_term=GO:0016757;gbkey=CDS;gene=wcaL;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461045.1;locus_tag=C9F05_RS14040;product=colanic acid biosynthesis glycosyltransferase WcaL;protein_id=WP_069722191.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	11898	13178	.	-	.	ID=gene-C9F05_RS14045;Name=wcaK;gbkey=Gene;gene=wcaK;gene_biotype=protein_coding;locus_tag=C9F05_RS14045;old_locus_tag=C9F05_14445
NZ_PYKE01000218.1	Protein Homology	CDS	11898	13178	.	-	0	ID=cds-WP_000770895.1;Parent=gene-C9F05_RS14045;Dbxref=GenBank:WP_000770895.1;Name=WP_000770895.1;gbkey=CDS;gene=wcaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461046.1;locus_tag=C9F05_RS14045;product=colanic acid biosynthesis pyruvyl transferase WcaK;protein_id=WP_000770895.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	13200	14678	.	-	.	ID=gene-C9F05_RS14050;Name=wzxC;gbkey=Gene;gene=wzxC;gene_biotype=protein_coding;locus_tag=C9F05_RS14050;old_locus_tag=C9F05_14450
NZ_PYKE01000218.1	Protein Homology	CDS	13200	14678	.	-	0	ID=cds-WP_000058681.1;Parent=gene-C9F05_RS14050;Dbxref=GenBank:WP_000058681.1;Name=WP_000058681.1;gbkey=CDS;gene=wzxC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461047.1;locus_tag=C9F05_RS14050;product=colanic acid undecaprenyl disphosphate flippase WzxC;protein_id=WP_000058681.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	14780	16174	.	-	.	ID=gene-C9F05_RS14055;Name=wcaJ;gbkey=Gene;gene=wcaJ;gene_biotype=protein_coding;locus_tag=C9F05_RS14055;old_locus_tag=C9F05_14455
NZ_PYKE01000218.1	Protein Homology	CDS	14780	16174	.	-	0	ID=cds-WP_000183163.1;Parent=gene-C9F05_RS14055;Dbxref=GenBank:WP_000183163.1;Name=WP_000183163.1;gbkey=CDS;gene=wcaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461048.1;locus_tag=C9F05_RS14055;product=undecaprenyl-phosphate glucose phosphotransferase;protein_id=WP_000183163.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	16228	17598	.	-	.	ID=gene-C9F05_RS14060;Name=cpsG;gbkey=Gene;gene=cpsG;gene_biotype=protein_coding;gene_synonym=manB;locus_tag=C9F05_RS14060;old_locus_tag=C9F05_14460
NZ_PYKE01000218.1	Protein Homology	CDS	16228	17598	.	-	0	ID=cds-WP_135370392.1;Parent=gene-C9F05_RS14060;Dbxref=GenBank:WP_135370392.1;Name=WP_135370392.1;gbkey=CDS;gene=cpsG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461049.1;locus_tag=C9F05_RS14060;product=colanic acid biosynthesis phosphomannomutase CpsG;protein_id=WP_135370392.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	17709	19151	.	-	.	ID=gene-C9F05_RS14065;Name=cpsB;gbkey=Gene;gene=cpsB;gene_biotype=protein_coding;locus_tag=C9F05_RS14065;old_locus_tag=C9F05_14465
NZ_PYKE01000218.1	Protein Homology	CDS	17709	19151	.	-	0	ID=cds-WP_103106940.1;Parent=gene-C9F05_RS14065;Dbxref=GenBank:WP_103106940.1;Name=WP_103106940.1;Ontology_term=GO:0000271,GO:0016779;gbkey=CDS;gene=cpsB;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461050.3;locus_tag=C9F05_RS14065;product=mannose-1-phosphate guanyltransferase;protein_id=WP_103106940.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	19148	20371	.	-	.	ID=gene-C9F05_RS14070;Name=wcaI;gbkey=Gene;gene=wcaI;gene_biotype=protein_coding;locus_tag=C9F05_RS14070;old_locus_tag=C9F05_14470
NZ_PYKE01000218.1	Protein Homology	CDS	19148	20371	.	-	0	ID=cds-WP_000699652.1;Parent=gene-C9F05_RS14070;Dbxref=GenBank:WP_000699652.1;Name=WP_000699652.1;gbkey=CDS;gene=wcaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461051.1;locus_tag=C9F05_RS14070;product=colanic acid biosynthesis fucosyltransferase WcaI;protein_id=WP_000699652.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	pseudogene	20368	20842	.	-	.	ID=gene-C9F05_RS14075;Name=C9F05_RS14075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS14075;old_locus_tag=C9F05_14475;pseudo=true
NZ_PYKE01000218.1	Protein Homology	CDS	20368	20842	.	-	0	ID=cds-C9F05_RS14075;Parent=gene-C9F05_RS14075;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001526160.1;locus_tag=C9F05_RS14075;product=GDP-mannose mannosyl hydrolase;pseudo=true;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	20845	21810	.	-	.	ID=gene-C9F05_RS14080;Name=fcl;gbkey=Gene;gene=fcl;gene_biotype=protein_coding;gene_synonym=wcaG,yefB;locus_tag=C9F05_RS14080;old_locus_tag=C9F05_14480
NZ_PYKE01000218.1	Protein Homology	CDS	20845	21810	.	-	0	ID=cds-WP_001041701.1;Parent=gene-C9F05_RS14080;Dbxref=GenBank:WP_001041701.1;Name=WP_001041701.1;Ontology_term=GO:0042351,GO:0016853,GO:0050577;gbkey=CDS;gene=fcl;go_function=isomerase activity|0016853||IEA,GDP-L-fucose synthase activity|0050577||IEA;go_process='de novo' GDP-L-fucose biosynthetic process|0042351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461053.1;locus_tag=C9F05_RS14080;product=GDP-L-fucose synthase;protein_id=WP_001041701.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	21813	22934	.	-	.	ID=gene-C9F05_RS14085;Name=gmd;gbkey=Gene;gene=gmd;gene_biotype=protein_coding;locus_tag=C9F05_RS14085;old_locus_tag=C9F05_14485
NZ_PYKE01000218.1	Protein Homology	CDS	21813	22934	.	-	0	ID=cds-WP_000048160.1;Parent=gene-C9F05_RS14085;Dbxref=GenBank:WP_000048160.1;Name=WP_000048160.1;Ontology_term=GO:0000271,GO:0019673,GO:0008446;gbkey=CDS;gene=gmd;go_function=GDP-mannose 4%2C6-dehydratase activity|0008446||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA,GDP-mannose metabolic process|0019673||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128297.1;locus_tag=C9F05_RS14085;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_000048160.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	22958	23512	.	-	.	ID=gene-C9F05_RS14090;Name=wcaF;gbkey=Gene;gene=wcaF;gene_biotype=protein_coding;locus_tag=C9F05_RS14090;old_locus_tag=C9F05_14490
NZ_PYKE01000218.1	Protein Homology	CDS	22958	23512	.	-	0	ID=cds-WP_001153603.1;Parent=gene-C9F05_RS14090;Dbxref=GenBank:WP_001153603.1;Name=WP_001153603.1;gbkey=CDS;gene=wcaF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461055.1;locus_tag=C9F05_RS14090;product=colanic acid biosynthesis acetyltransferase WcaF;protein_id=WP_001153603.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	23528	24274	.	-	.	ID=gene-C9F05_RS14095;Name=wcaE;gbkey=Gene;gene=wcaE;gene_biotype=protein_coding;locus_tag=C9F05_RS14095;old_locus_tag=C9F05_14495
NZ_PYKE01000218.1	Protein Homology	CDS	23528	24274	.	-	0	ID=cds-WP_135370393.1;Parent=gene-C9F05_RS14095;Dbxref=GenBank:WP_135370393.1;Name=WP_135370393.1;gbkey=CDS;gene=wcaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461056.1;locus_tag=C9F05_RS14095;product=colanic acid biosynthesis glycosyltransferase WcaE;protein_id=WP_135370393.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	24287	25501	.	-	.	ID=gene-C9F05_RS14100;Name=wcaD;gbkey=Gene;gene=wcaD;gene_biotype=protein_coding;locus_tag=C9F05_RS14100;old_locus_tag=C9F05_14500
NZ_PYKE01000218.1	Protein Homology	CDS	24287	25501	.	-	0	ID=cds-WP_000091397.1;Parent=gene-C9F05_RS14100;Dbxref=GenBank:WP_000091397.1;Name=WP_000091397.1;gbkey=CDS;gene=wcaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461057.1;locus_tag=C9F05_RS14100;product=colanic acid polymerase WcaD;protein_id=WP_000091397.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	25476	26693	.	-	.	ID=gene-C9F05_RS14105;Name=wcaC;gbkey=Gene;gene=wcaC;gene_biotype=protein_coding;locus_tag=C9F05_RS14105;old_locus_tag=C9F05_14505
NZ_PYKE01000218.1	Protein Homology	CDS	25476	26693	.	-	0	ID=cds-WP_135370394.1;Parent=gene-C9F05_RS14105;Dbxref=GenBank:WP_135370394.1;Name=WP_135370394.1;Ontology_term=GO:0016757;gbkey=CDS;gene=wcaC;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461058.1;locus_tag=C9F05_RS14105;product=colanic acid biosynthesis glycosyltransferase WcaC;protein_id=WP_135370394.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	26690	27178	.	-	.	ID=gene-C9F05_RS14110;Name=wcaB;gbkey=Gene;gene=wcaB;gene_biotype=protein_coding;locus_tag=C9F05_RS14110;old_locus_tag=C9F05_14510
NZ_PYKE01000218.1	Protein Homology	CDS	26690	27178	.	-	0	ID=cds-WP_000888724.1;Parent=gene-C9F05_RS14110;Dbxref=GenBank:WP_000888724.1;Name=WP_000888724.1;gbkey=CDS;gene=wcaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461059.1;locus_tag=C9F05_RS14110;product=colanic acid biosynthesis acetyltransferase WcaB;protein_id=WP_000888724.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	27181	28023	.	-	.	ID=gene-C9F05_RS14115;Name=wcaA;gbkey=Gene;gene=wcaA;gene_biotype=protein_coding;locus_tag=C9F05_RS14115;old_locus_tag=C9F05_14515
NZ_PYKE01000218.1	Protein Homology	CDS	27181	28023	.	-	0	ID=cds-WP_000205695.1;Parent=gene-C9F05_RS14115;Dbxref=GenBank:WP_000205695.1;Name=WP_000205695.1;gbkey=CDS;gene=wcaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461060.1;locus_tag=C9F05_RS14115;product=colanic acid biosynthesis glycosyltransferase WcaA;protein_id=WP_000205695.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	28110	30269	.	-	.	ID=gene-C9F05_RS14120;Name=wzc;gbkey=Gene;gene=wzc;gene_biotype=protein_coding;locus_tag=C9F05_RS14120;old_locus_tag=C9F05_14520
NZ_PYKE01000218.1	Protein Homology	CDS	28110	30269	.	-	0	ID=cds-WP_135370395.1;Parent=gene-C9F05_RS14120;Dbxref=GenBank:WP_135370395.1;Name=WP_135370395.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;gene=wzc;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461061.1;locus_tag=C9F05_RS14120;product=tyrosine-protein kinase Wzc;protein_id=WP_135370395.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	30266	30715	.	-	.	ID=gene-C9F05_RS14125;Name=wzb;gbkey=Gene;gene=wzb;gene_biotype=protein_coding;locus_tag=C9F05_RS14125;old_locus_tag=C9F05_14525
NZ_PYKE01000218.1	Protein Homology	CDS	30266	30715	.	-	0	ID=cds-WP_000482224.1;Parent=gene-C9F05_RS14125;Dbxref=GenBank:WP_000482224.1;Name=WP_000482224.1;gbkey=CDS;gene=wzb;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461062.1;locus_tag=C9F05_RS14125;product=low molecular weight protein-tyrosine-phosphatase Wzb;protein_id=WP_000482224.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	30721	31860	.	-	.	ID=gene-C9F05_RS14130;Name=C9F05_RS14130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14130;old_locus_tag=C9F05_14530
NZ_PYKE01000218.1	Protein Homology	CDS	30721	31860	.	-	0	ID=cds-WP_000978077.1;Parent=gene-C9F05_RS14130;Dbxref=GenBank:WP_000978077.1;Name=WP_000978077.1;Ontology_term=GO:0015774,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=polysaccharide transport|0015774||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461063.1;locus_tag=C9F05_RS14130;product=polysaccharide export protein;protein_id=WP_000978077.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	32535	34115	.	+	.	ID=gene-C9F05_RS14135;Name=C9F05_RS14135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14135;old_locus_tag=C9F05_14540
NZ_PYKE01000218.1	Protein Homology	CDS	32535	34115	.	+	0	ID=cds-WP_000454713.1;Parent=gene-C9F05_RS14135;Dbxref=GenBank:WP_000454713.1;Name=WP_000454713.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461064.1;locus_tag=C9F05_RS14135;product=TerC family protein;protein_id=WP_000454713.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	34201	36057	.	-	.	ID=gene-C9F05_RS14140;Name=asmA;gbkey=Gene;gene=asmA;gene_biotype=protein_coding;locus_tag=C9F05_RS14140;old_locus_tag=C9F05_14545
NZ_PYKE01000218.1	Protein Homology	CDS	34201	36057	.	-	0	ID=cds-WP_023206604.1;Parent=gene-C9F05_RS14140;Dbxref=GenBank:WP_023206604.1;Name=WP_023206604.1;gbkey=CDS;gene=asmA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461065.1;locus_tag=C9F05_RS14140;product=outer membrane assembly protein AsmA;protein_id=WP_023206604.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	36096	36677	.	-	.	ID=gene-C9F05_RS14145;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=C9F05_RS14145;old_locus_tag=C9F05_14550
NZ_PYKE01000218.1	Protein Homology	CDS	36096	36677	.	-	0	ID=cds-WP_001234783.1;Parent=gene-C9F05_RS14145;Dbxref=GenBank:WP_001234783.1;Name=WP_001234783.1;Ontology_term=GO:0006229,GO:0008829;gbkey=CDS;gene=dcd;go_function=dCTP deaminase activity|0008829||IEA;go_process=dUTP biosynthetic process|0006229||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004942378.1;locus_tag=C9F05_RS14145;product=dCTP deaminase;protein_id=WP_001234783.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	36768	37409	.	-	.	ID=gene-C9F05_RS14150;Name=udk;gbkey=Gene;gene=udk;gene_biotype=protein_coding;locus_tag=C9F05_RS14150;old_locus_tag=C9F05_14555
NZ_PYKE01000218.1	Protein Homology	CDS	36768	37409	.	-	0	ID=cds-WP_000132082.1;Parent=gene-C9F05_RS14150;Dbxref=GenBank:WP_000132082.1;Name=WP_000132082.1;Ontology_term=GO:0004849;gbkey=CDS;gene=udk;go_function=uridine kinase activity|0004849||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461067.1;locus_tag=C9F05_RS14150;product=uridine kinase;protein_id=WP_000132082.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	37740	40730	.	+	.	ID=gene-C9F05_RS14155;Name=C9F05_RS14155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14155;old_locus_tag=C9F05_14560
NZ_PYKE01000218.1	Protein Homology	CDS	37740	40730	.	+	0	ID=cds-WP_135370396.1;Parent=gene-C9F05_RS14155;Dbxref=GenBank:WP_135370396.1;Name=WP_135370396.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461068.1;locus_tag=C9F05_RS14155;product=MASE1 domain-containing protein;protein_id=WP_135370396.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	40698	41567	.	-	.	ID=gene-C9F05_RS14160;Name=alkA;gbkey=Gene;gene=alkA;gene_biotype=protein_coding;locus_tag=C9F05_RS14160;old_locus_tag=C9F05_14565
NZ_PYKE01000218.1	Protein Homology	CDS	40698	41567	.	-	0	ID=cds-WP_000494703.1;Parent=gene-C9F05_RS14160;Dbxref=GenBank:WP_000494703.1;Name=WP_000494703.1;Ontology_term=GO:0006281,GO:0003824;gbkey=CDS;gene=alkA;go_function=catalytic activity|0003824||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461069.1;locus_tag=C9F05_RS14160;product=DNA-3-methyladenine glycosylase 2;protein_id=WP_000494703.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	41701	43053	.	+	.	ID=gene-C9F05_RS14165;Name=yegD;gbkey=Gene;gene=yegD;gene_biotype=protein_coding;locus_tag=C9F05_RS14165;old_locus_tag=C9F05_14575
NZ_PYKE01000218.1	Protein Homology	CDS	41701	43053	.	+	0	ID=cds-WP_000469628.1;Parent=gene-C9F05_RS14165;Dbxref=GenBank:WP_000469628.1;Name=WP_000469628.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=yegD;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461070.1;locus_tag=C9F05_RS14165;product=molecular chaperone;protein_id=WP_000469628.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	43152	43211	.	-	.	ID=gene-C9F05_RS14170;Name=C9F05_RS14170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14170
NZ_PYKE01000218.1	Protein Homology	CDS	43152	43211	.	-	0	ID=cds-WP_105887528.1;Parent=gene-C9F05_RS14170;Dbxref=GenBank:WP_105887528.1;Name=WP_105887528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791247.1;locus_tag=C9F05_RS14170;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_105887528.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	43494	44735	.	+	.	ID=gene-C9F05_RS14175;Name=mdtA;gbkey=Gene;gene=mdtA;gene_biotype=protein_coding;locus_tag=C9F05_RS14175;old_locus_tag=C9F05_14580
NZ_PYKE01000218.1	Protein Homology	CDS	43494	44735	.	+	0	ID=cds-WP_000678819.1;Parent=gene-C9F05_RS14175;Dbxref=GenBank:WP_000678819.1;Name=WP_000678819.1;gbkey=CDS;gene=mdtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461071.1;locus_tag=C9F05_RS14175;product=multidrug efflux RND transporter subunit MdtA;protein_id=WP_000678819.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	44735	47857	.	+	.	ID=gene-C9F05_RS14180;Name=mdtB;gbkey=Gene;gene=mdtB;gene_biotype=protein_coding;locus_tag=C9F05_RS14180;old_locus_tag=C9F05_14585
NZ_PYKE01000218.1	Protein Homology	CDS	44735	47857	.	+	0	ID=cds-WP_135370397.1;Parent=gene-C9F05_RS14180;Dbxref=GenBank:WP_135370397.1;Name=WP_135370397.1;gbkey=CDS;gene=mdtB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461072.1;locus_tag=C9F05_RS14180;product=multidrug efflux RND transporter permease subunit MdtB;protein_id=WP_135370397.1;transl_table=11
NZ_PYKE01000218.1	RefSeq	gene	47858	47938	.	+	.	ID=gene-C9F05_RS24175;Name=C9F05_RS24175;end_range=47938,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24175;partial=true
NZ_PYKE01000218.1	Protein Homology	CDS	47858	47938	.	+	0	ID=cds-WP_441007333.1;Parent=gene-C9F05_RS24175;Dbxref=GenBank:WP_441007333.1;Name=WP_441007333.1;end_range=47938,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461073.1;locus_tag=C9F05_RS24175;partial=true;product=hypothetical protein;protein_id=WP_441007333.1;transl_table=11
##sequence-region NZ_PYKE01000320.1 1 89852
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000320.1	RefSeq	region	1	89852	.	+	.	ID=NZ_PYKE01000320.1:1..89852;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000320.1	RefSeq	pseudogene	92	235	.	+	.	ID=gene-C9F05_RS23945;Name=C9F05_RS23945;end_range=235,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23945;old_locus_tag=C9F05_22245;partial=true;pseudo=true
NZ_PYKE01000320.1	Protein Homology	CDS	92	235	.	+	0	ID=cds-C9F05_RS23945;Parent=gene-C9F05_RS23945;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=235,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017466162.1;locus_tag=C9F05_RS23945;partial=true;product=fimbrial protein;pseudo=true;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	254	550	.	-	.	ID=gene-C9F05_RS21665;Name=C9F05_RS21665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21665;old_locus_tag=C9F05_22250
NZ_PYKE01000320.1	Protein Homology	CDS	254	550	.	-	0	ID=cds-WP_001626542.1;Parent=gene-C9F05_RS21665;Dbxref=GenBank:WP_001626542.1;Name=WP_001626542.1;Ontology_term=GO:0090729,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=toxin activity|0090729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001532579.1;locus_tag=C9F05_RS21665;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_001626542.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	516	872	.	-	.	ID=gene-C9F05_RS21670;Name=C9F05_RS21670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21670;old_locus_tag=C9F05_22255
NZ_PYKE01000320.1	Protein Homology	CDS	516	872	.	-	0	ID=cds-WP_000480218.1;Parent=gene-C9F05_RS21670;Dbxref=GenBank:WP_000480218.1;Name=WP_000480218.1;Ontology_term=GO:0051983;gbkey=CDS;go_process=regulation of chromosome segregation|0051983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461876.3;locus_tag=C9F05_RS21670;product=type II toxin-antitoxin system ParD family antitoxin;protein_id=WP_000480218.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	956	3190	.	-	.	ID=gene-C9F05_RS21675;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;locus_tag=C9F05_RS21675;old_locus_tag=C9F05_22260
NZ_PYKE01000320.1	Protein Homology	CDS	956	3190	.	-	0	ID=cds-WP_000226841.1;Parent=gene-C9F05_RS21675;Dbxref=GenBank:WP_000226841.1;Name=WP_000226841.1;Ontology_term=GO:0015969;gbkey=CDS;gene=relA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461877.1;locus_tag=C9F05_RS21675;product=GTP diphosphokinase;protein_id=WP_000226841.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	3242	4537	.	-	.	ID=gene-C9F05_RS21680;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=protein_coding;locus_tag=C9F05_RS21680;old_locus_tag=C9F05_22265
NZ_PYKE01000320.1	Protein Homology	CDS	3242	4537	.	-	0	ID=cds-WP_023232692.1;Parent=gene-C9F05_RS21680;Dbxref=GenBank:WP_023232692.1;Name=WP_023232692.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmD;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461878.1;locus_tag=C9F05_RS21680;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_023232692.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	4595	7351	.	+	.	ID=gene-C9F05_RS21685;Name=barA;gbkey=Gene;gene=barA;gene_biotype=protein_coding;locus_tag=C9F05_RS21685;old_locus_tag=C9F05_22270
NZ_PYKE01000320.1	Protein Homology	CDS	4595	7351	.	+	0	ID=cds-WP_000186400.1;Parent=gene-C9F05_RS21685;Dbxref=GenBank:WP_000186400.1;Name=WP_000186400.1;Ontology_term=GO:0000160,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=barA;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461879.1;locus_tag=C9F05_RS21685;product=two-component sensor histidine kinase BarA;protein_id=WP_000186400.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	7395	8537	.	-	.	ID=gene-C9F05_RS21690;Name=C9F05_RS21690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21690;old_locus_tag=C9F05_22275
NZ_PYKE01000320.1	Protein Homology	CDS	7395	8537	.	-	0	ID=cds-WP_135370629.1;Parent=gene-C9F05_RS21690;Dbxref=GenBank:WP_135370629.1;Name=WP_135370629.1;Ontology_term=GO:0005524,GO:0008887;gbkey=CDS;go_function=ATP binding|0005524||IEA,glycerate kinase activity|0008887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461880.1;locus_tag=C9F05_RS21690;product=glycerate kinase;protein_id=WP_135370629.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	8615	9955	.	-	.	ID=gene-C9F05_RS21695;Name=gudD;gbkey=Gene;gene=gudD;gene_biotype=protein_coding;locus_tag=C9F05_RS21695;old_locus_tag=C9F05_22280
NZ_PYKE01000320.1	Protein Homology	CDS	8615	9955	.	-	0	ID=cds-WP_000107113.1;Parent=gene-C9F05_RS21695;Dbxref=GenBank:WP_000107113.1;Name=WP_000107113.1;Ontology_term=GO:0019394,GO:0000287,GO:0008872;gbkey=CDS;gene=gudD;go_function=magnesium ion binding|0000287||IEA,glucarate dehydratase activity|0008872||IEA;go_process=glucarate catabolic process|0019394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311674.1;locus_tag=C9F05_RS21695;product=glucarate dehydratase;protein_id=WP_000107113.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	9976	11316	.	-	.	ID=gene-C9F05_RS21700;Name=C9F05_RS21700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21700;old_locus_tag=C9F05_22285
NZ_PYKE01000320.1	Protein Homology	CDS	9976	11316	.	-	0	ID=cds-WP_000211801.1;Parent=gene-C9F05_RS21700;Dbxref=GenBank:WP_000211801.1;Name=WP_000211801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461882.1;locus_tag=C9F05_RS21700;product=enolase C-terminal domain-like protein;protein_id=WP_000211801.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	11313	12671	.	-	.	ID=gene-C9F05_RS21705;Name=gudP;gbkey=Gene;gene=gudP;gene_biotype=protein_coding;locus_tag=C9F05_RS21705;old_locus_tag=C9F05_22290
NZ_PYKE01000320.1	Protein Homology	CDS	11313	12671	.	-	0	ID=cds-WP_000097015.1;Parent=gene-C9F05_RS21705;Dbxref=GenBank:WP_000097015.1;Name=WP_000097015.1;gbkey=CDS;gene=gudP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461883.1;locus_tag=C9F05_RS21705;product=galactarate/glucarate/glycerate transporter GudP;protein_id=WP_000097015.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	12751	13002	.	+	.	ID=gene-C9F05_RS21710;Name=C9F05_RS21710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21710;old_locus_tag=C9F05_22295
NZ_PYKE01000320.1	GeneMarkS-2+	CDS	12751	13002	.	+	0	ID=cds-WP_001540820.1;Parent=gene-C9F05_RS21710;Dbxref=GenBank:WP_001540820.1;Name=WP_001540820.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS21710;product=hypothetical protein;protein_id=WP_001540820.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	13151	13600	.	-	.	ID=gene-C9F05_RS21715;Name=C9F05_RS21715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21715;old_locus_tag=C9F05_22300
NZ_PYKE01000320.1	Protein Homology	CDS	13151	13600	.	-	0	ID=cds-WP_000807735.1;Parent=gene-C9F05_RS21715;Dbxref=GenBank:WP_000807735.1;Name=WP_000807735.1;Ontology_term=GO:0010181;gbkey=CDS;go_function=FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461884.1;locus_tag=C9F05_RS21715;product=flavodoxin;protein_id=WP_000807735.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	13619	14401	.	-	.	ID=gene-C9F05_RS21720;Name=truC;gbkey=Gene;gene=truC;gene_biotype=protein_coding;locus_tag=C9F05_RS21720;old_locus_tag=C9F05_22305
NZ_PYKE01000320.1	Protein Homology	CDS	13619	14401	.	-	0	ID=cds-WP_001619863.1;Parent=gene-C9F05_RS21720;Dbxref=GenBank:WP_001619863.1;Name=WP_001619863.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;gene=truC;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001715016.1;locus_tag=C9F05_RS21720;product=tRNA pseudouridine(65) synthase TruC;protein_id=WP_001619863.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	14401	14730	.	-	.	ID=gene-C9F05_RS21725;Name=C9F05_RS21725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21725;old_locus_tag=C9F05_22310
NZ_PYKE01000320.1	Protein Homology	CDS	14401	14730	.	-	0	ID=cds-WP_135370630.1;Parent=gene-C9F05_RS21725;Dbxref=GenBank:WP_135370630.1;Name=WP_135370630.1;Ontology_term=GO:0044010;gbkey=CDS;go_process=single-species biofilm formation|0044010||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461886.1;locus_tag=C9F05_RS21725;product=YqcC family protein;protein_id=WP_135370630.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	15342	15887	.	-	.	ID=gene-C9F05_RS21735;Name=syd;gbkey=Gene;gene=syd;gene_biotype=protein_coding;locus_tag=C9F05_RS21735;old_locus_tag=C9F05_22320
NZ_PYKE01000320.1	Protein Homology	CDS	15342	15887	.	-	0	ID=cds-WP_000343990.1;Parent=gene-C9F05_RS21735;Dbxref=GenBank:WP_000343990.1;Name=WP_000343990.1;Ontology_term=GO:0009898;gbkey=CDS;gene=syd;go_component=cytoplasmic side of plasma membrane|0009898||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461887.1;locus_tag=C9F05_RS21735;product=SecY-interacting protein;protein_id=WP_000343990.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	15956	16804	.	+	.	ID=gene-C9F05_RS21740;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=C9F05_RS21740;old_locus_tag=C9F05_22325
NZ_PYKE01000320.1	Protein Homology	CDS	15956	16804	.	+	0	ID=cds-WP_000100457.1;Parent=gene-C9F05_RS21740;Dbxref=GenBank:WP_000100457.1;Name=WP_000100457.1;Note=Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;Ontology_term=GO:0008616,GO:0033739,GO:0043867;gbkey=CDS;gene=queF;go_function=preQ1 synthase activity|0033739||IEA,7-cyano-7-deazaguanine tRNA-ribosyltransferase activity|0043867||IEA;go_process=tRNA queuosine(34) biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461888.1;locus_tag=C9F05_RS21740;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=WP_000100457.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	16917	18281	.	+	.	ID=gene-C9F05_RS21745;Name=ppnN;gbkey=Gene;gene=ppnN;gene_biotype=protein_coding;locus_tag=C9F05_RS21745;old_locus_tag=C9F05_22330
NZ_PYKE01000320.1	Protein Homology	CDS	16917	18281	.	+	0	ID=cds-WP_000627973.1;Parent=gene-C9F05_RS21745;Dbxref=GenBank:WP_000627973.1;Name=WP_000627973.1;gbkey=CDS;gene=ppnN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461889.1;locus_tag=C9F05_RS21745;product=nucleotide 5'-monophosphate nucleosidase PpnN;protein_id=WP_000627973.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	18846	20135	.	+	.	ID=gene-C9F05_RS21750;Name=sdaC;gbkey=Gene;gene=sdaC;gene_biotype=protein_coding;locus_tag=C9F05_RS21750;old_locus_tag=C9F05_22335
NZ_PYKE01000320.1	Protein Homology	CDS	18846	20135	.	+	0	ID=cds-WP_000450462.1;Parent=gene-C9F05_RS21750;Dbxref=GenBank:WP_000450462.1;Name=WP_000450462.1;gbkey=CDS;gene=sdaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461890.1;locus_tag=C9F05_RS21750;product=HAAAP family serine/threonine permease SdaC;protein_id=WP_000450462.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	20194	21561	.	+	.	ID=gene-C9F05_RS21755;Name=sdaB;gbkey=Gene;gene=sdaB;gene_biotype=protein_coding;locus_tag=C9F05_RS21755;old_locus_tag=C9F05_22340
NZ_PYKE01000320.1	Protein Homology	CDS	20194	21561	.	+	0	ID=cds-WP_000626384.1;Parent=gene-C9F05_RS21755;Dbxref=GenBank:WP_000626384.1;Name=WP_000626384.1;gbkey=CDS;gene=sdaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461891.2;locus_tag=C9F05_RS21755;product=L-serine ammonia-lyase II;protein_id=WP_000626384.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	21732	22487	.	+	.	ID=gene-C9F05_RS21765;Name=xni;gbkey=Gene;gene=xni;gene_biotype=protein_coding;locus_tag=C9F05_RS21765;old_locus_tag=C9F05_22350
NZ_PYKE01000320.1	Protein Homology	CDS	21732	22487	.	+	0	ID=cds-WP_001519360.1;Parent=gene-C9F05_RS21765;Dbxref=GenBank:WP_001519360.1;Name=WP_001519360.1;Ontology_term=GO:0033567,GO:0003677,GO:0017108;gbkey=CDS;gene=xni;go_function=DNA binding|0003677||IEA,5'-flap endonuclease activity|0017108||IEA;go_process=DNA replication%2C Okazaki fragment processing|0033567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417278.4;locus_tag=C9F05_RS21765;product=flap endonuclease Xni;protein_id=WP_001519360.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	22579	23727	.	-	.	ID=gene-C9F05_RS21770;Name=fucO;gbkey=Gene;gene=fucO;gene_biotype=protein_coding;locus_tag=C9F05_RS21770;old_locus_tag=C9F05_22355
NZ_PYKE01000320.1	Protein Homology	CDS	22579	23727	.	-	0	ID=cds-WP_000013565.1;Parent=gene-C9F05_RS21770;Dbxref=GenBank:WP_000013565.1;Name=WP_000013565.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fucO;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461893.1;locus_tag=C9F05_RS21770;product=lactaldehyde reductase;protein_id=WP_000013565.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	23744	24391	.	-	.	ID=gene-C9F05_RS21775;Name=fucA;gbkey=Gene;gene=fucA;gene_biotype=protein_coding;locus_tag=C9F05_RS21775;old_locus_tag=C9F05_22360
NZ_PYKE01000320.1	Protein Homology	CDS	23744	24391	.	-	0	ID=cds-WP_000440828.1;Parent=gene-C9F05_RS21775;Dbxref=GenBank:WP_000440828.1;Name=WP_000440828.1;Ontology_term=GO:0006004,GO:0008270,GO:0008738;gbkey=CDS;gene=fucA;go_function=zinc ion binding|0008270||IEA,L-fuculose-phosphate aldolase activity|0008738||IEA;go_process=fucose metabolic process|0006004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461894.1;locus_tag=C9F05_RS21775;product=L-fuculose-phosphate aldolase;protein_id=WP_000440828.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	24947	26263	.	+	.	ID=gene-C9F05_RS21780;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=C9F05_RS21780;old_locus_tag=C9F05_22365
NZ_PYKE01000320.1	Protein Homology	CDS	24947	26263	.	+	0	ID=cds-WP_000528625.1;Parent=gene-C9F05_RS21780;Dbxref=GenBank:WP_000528625.1;Name=WP_000528625.1;Ontology_term=GO:0015756,GO:0015150;gbkey=CDS;gene=fucP;go_function=fucose transmembrane transporter activity|0015150||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417281.1;locus_tag=C9F05_RS21780;product=L-fucose:H+ symporter permease;protein_id=WP_000528625.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	26295	28070	.	+	.	ID=gene-C9F05_RS21785;Name=fucI;gbkey=Gene;gene=fucI;gene_biotype=protein_coding;locus_tag=C9F05_RS21785;old_locus_tag=C9F05_22370
NZ_PYKE01000320.1	Protein Homology	CDS	26295	28070	.	+	0	ID=cds-WP_000724126.1;Parent=gene-C9F05_RS21785;Dbxref=GenBank:WP_000724126.1;Name=WP_000724126.1;Ontology_term=GO:0019317,GO:0008736,GO:0030145,GO:0005737;gbkey=CDS;gene=fucI;go_component=cytoplasm|0005737||IEA;go_function=L-fucose isomerase activity|0008736||IEA,manganese ion binding|0030145||IEA;go_process=fucose catabolic process|0019317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461895.1;locus_tag=C9F05_RS21785;product=L-fucose isomerase;protein_id=WP_000724126.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	28171	29589	.	+	.	ID=gene-C9F05_RS21790;Name=fucK;gbkey=Gene;gene=fucK;gene_biotype=protein_coding;locus_tag=C9F05_RS21790;old_locus_tag=C9F05_22375
NZ_PYKE01000320.1	Protein Homology	CDS	28171	29589	.	+	0	ID=cds-WP_135370631.1;Parent=gene-C9F05_RS21790;Dbxref=GenBank:WP_135370631.1;Name=WP_135370631.1;Ontology_term=GO:0042355,GO:0008737;gbkey=CDS;gene=fucK;go_function=L-fuculokinase activity|0008737||IEA;go_process=L-fucose catabolic process|0042355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461896.1;locus_tag=C9F05_RS21790;product=L-fuculokinase;protein_id=WP_135370631.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	29591	30013	.	+	.	ID=gene-C9F05_RS21795;Name=fucU;gbkey=Gene;gene=fucU;gene_biotype=protein_coding;locus_tag=C9F05_RS21795;old_locus_tag=C9F05_22380
NZ_PYKE01000320.1	Protein Homology	CDS	29591	30013	.	+	0	ID=cds-WP_000920848.1;Parent=gene-C9F05_RS21795;Dbxref=GenBank:WP_000920848.1;Name=WP_000920848.1;Ontology_term=GO:0042354,GO:0016854,GO:0042806;gbkey=CDS;gene=fucU;go_function=racemase and epimerase activity|0016854||IEA,fucose binding|0042806||IEA;go_process=L-fucose metabolic process|0042354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461897.1;locus_tag=C9F05_RS21795;product=L-fucose mutarotase;protein_id=WP_000920848.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	30071	30781	.	+	.	ID=gene-C9F05_RS21800;Name=fucR;gbkey=Gene;gene=fucR;gene_biotype=protein_coding;locus_tag=C9F05_RS21800;old_locus_tag=C9F05_22385
NZ_PYKE01000320.1	Protein Homology	CDS	30071	30781	.	+	0	ID=cds-WP_000642330.1;Parent=gene-C9F05_RS21800;Dbxref=GenBank:WP_000642330.1;Name=WP_000642330.1;gbkey=CDS;gene=fucR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461898.1;locus_tag=C9F05_RS21800;product=L-fucose operon activator;protein_id=WP_000642330.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	30840	31940	.	-	.	ID=gene-C9F05_RS21805;Name=rlmM;gbkey=Gene;gene=rlmM;gene_biotype=protein_coding;locus_tag=C9F05_RS21805;old_locus_tag=C9F05_22390
NZ_PYKE01000320.1	Protein Homology	CDS	30840	31940	.	-	0	ID=cds-WP_001045494.1;Parent=gene-C9F05_RS21805;Dbxref=GenBank:WP_001045494.1;Name=WP_001045494.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmM;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010435097.1;locus_tag=C9F05_RS21805;product=23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM;protein_id=WP_001045494.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	31933	32328	.	-	.	ID=gene-C9F05_RS21810;Name=C9F05_RS21810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21810;old_locus_tag=C9F05_22395
NZ_PYKE01000320.1	Protein Homology	CDS	31933	32328	.	-	0	ID=cds-WP_000203913.1;Parent=gene-C9F05_RS21810;Dbxref=GenBank:WP_000203913.1;Name=WP_000203913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461900.1;locus_tag=C9F05_RS21810;product=DUF423 domain-containing protein;protein_id=WP_000203913.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	32347	33264	.	-	.	ID=gene-C9F05_RS21815;Name=gcvA;gbkey=Gene;gene=gcvA;gene_biotype=protein_coding;locus_tag=C9F05_RS21815;old_locus_tag=C9F05_22400
NZ_PYKE01000320.1	Protein Homology	CDS	32347	33264	.	-	0	ID=cds-WP_000044409.1;Parent=gene-C9F05_RS21815;Dbxref=GenBank:WP_000044409.1;Name=WP_000044409.1;gbkey=CDS;gene=gcvA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130970.1;locus_tag=C9F05_RS21815;product=glycine cleavage system transcriptional regulator GcvA;protein_id=WP_000044409.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	33611	33838	.	-	.	ID=gene-C9F05_RS21820;Name=C9F05_RS21820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21820;old_locus_tag=C9F05_22405
NZ_PYKE01000320.1	Protein Homology	CDS	33611	33838	.	-	0	ID=cds-WP_000750393.1;Parent=gene-C9F05_RS21820;Dbxref=GenBank:WP_000750393.1;Name=WP_000750393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461902.1;locus_tag=C9F05_RS21820;product=YgdI/YgdR family lipoprotein;protein_id=WP_000750393.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	34031	35236	.	+	.	ID=gene-C9F05_RS21825;Name=csdA;gbkey=Gene;gene=csdA;gene_biotype=protein_coding;locus_tag=C9F05_RS21825;old_locus_tag=C9F05_22410
NZ_PYKE01000320.1	Protein Homology	CDS	34031	35236	.	+	0	ID=cds-WP_000991056.1;Parent=gene-C9F05_RS21825;Dbxref=GenBank:WP_000991056.1;Name=WP_000991056.1;Ontology_term=GO:0006534,GO:0016226,GO:0030170,GO:0031071;gbkey=CDS;gene=csdA;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=cysteine metabolic process|0006534||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461903.1;locus_tag=C9F05_RS21825;product=cysteine desulfurase CsdA;protein_id=WP_000991056.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	35236	35679	.	+	.	ID=gene-C9F05_RS21830;Name=csdE;gbkey=Gene;gene=csdE;gene_biotype=protein_coding;locus_tag=C9F05_RS21830;old_locus_tag=C9F05_22415
NZ_PYKE01000320.1	Protein Homology	CDS	35236	35679	.	+	0	ID=cds-WP_000184195.1;Parent=gene-C9F05_RS21830;Dbxref=GenBank:WP_000184195.1;Name=WP_000184195.1;gbkey=CDS;gene=csdE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461904.1;locus_tag=C9F05_RS21830;product=cysteine desulfurase sulfur acceptor subunit CsdE;protein_id=WP_000184195.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	35979	36866	.	+	.	ID=gene-C9F05_RS21835;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=C9F05_RS21835;old_locus_tag=C9F05_22420
NZ_PYKE01000320.1	Protein Homology	CDS	35979	36866	.	+	0	ID=cds-WP_111742538.1;Parent=gene-C9F05_RS21835;Dbxref=GenBank:WP_111742538.1;Name=WP_111742538.1;Ontology_term=GO:0006810,GO:0005215,GO:0005886;gbkey=CDS;gene=rarD;go_component=plasma membrane|0005886||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461905.3;locus_tag=C9F05_RS21835;product=EamA family transporter RarD;protein_id=WP_111742538.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	36918	37724	.	-	.	ID=gene-C9F05_RS21840;Name=tcdA;gbkey=Gene;gene=tcdA;gene_biotype=protein_coding;locus_tag=C9F05_RS21840;old_locus_tag=C9F05_22425
NZ_PYKE01000320.1	Protein Homology	CDS	36918	37724	.	-	0	ID=cds-WP_000117742.1;Parent=gene-C9F05_RS21840;Dbxref=GenBank:WP_000117742.1;Name=WP_000117742.1;Ontology_term=GO:0008641;gbkey=CDS;gene=tcdA;go_function=ubiquitin-like modifier activating enzyme activity|0008641||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461906.1;locus_tag=C9F05_RS21840;product=tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA;protein_id=WP_000117742.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	37833	38930	.	-	.	ID=gene-C9F05_RS21845;Name=mltA;gbkey=Gene;gene=mltA;gene_biotype=protein_coding;locus_tag=C9F05_RS21845;old_locus_tag=C9F05_22430
NZ_PYKE01000320.1	Protein Homology	CDS	37833	38930	.	-	0	ID=cds-WP_000678626.1;Parent=gene-C9F05_RS21845;Dbxref=GenBank:WP_000678626.1;Name=WP_000678626.1;Ontology_term=GO:0009254,GO:0004553,GO:0019867;gbkey=CDS;gene=mltA;go_component=outer membrane|0019867||IEA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=peptidoglycan turnover|0009254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785702.1;locus_tag=C9F05_RS21845;product=murein transglycosylase A;protein_id=WP_000678626.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	39138	39214	.	+	.	ID=gene-C9F05_RS21850;Name=C9F05_RS21850;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS21850;old_locus_tag=C9F05_22435
NZ_PYKE01000320.1	tRNAscan-SE	tRNA	39138	39214	.	+	.	ID=rna-C9F05_RS21850;Parent=gene-C9F05_RS21850;anticodon=(pos:39172..39174);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS21850;product=tRNA-Met
NZ_PYKE01000320.1	tRNAscan-SE	exon	39138	39214	.	+	.	ID=exon-C9F05_RS21850-1;Parent=rna-C9F05_RS21850;anticodon=(pos:39172..39174);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS21850;product=tRNA-Met
NZ_PYKE01000320.1	RefSeq	gene	39324	40577	.	-	.	ID=gene-C9F05_RS21855;Name=amiC;gbkey=Gene;gene=amiC;gene_biotype=protein_coding;locus_tag=C9F05_RS21855;old_locus_tag=C9F05_22440
NZ_PYKE01000320.1	Protein Homology	CDS	39324	40577	.	-	0	ID=cds-WP_000011919.1;Parent=gene-C9F05_RS21855;Dbxref=GenBank:WP_000011919.1;Name=WP_000011919.1;Note=Like AmiA%2C dependent on TAT (Twin-Arginine Translocation) system for export.;gbkey=CDS;gene=amiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461908.1;locus_tag=C9F05_RS21855;product=N-acetylmuramoyl-L-alanine amidase AmiC;protein_id=WP_000011919.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	40810	42141	.	+	.	ID=gene-C9F05_RS21860;Name=argA;gbkey=Gene;gene=argA;gene_biotype=protein_coding;locus_tag=C9F05_RS21860;old_locus_tag=C9F05_22445
NZ_PYKE01000320.1	Protein Homology	CDS	40810	42141	.	+	0	ID=cds-WP_000588964.1;Parent=gene-C9F05_RS21860;Dbxref=GenBank:WP_000588964.1;Name=WP_000588964.1;Ontology_term=GO:0006526,GO:0004042;gbkey=CDS;gene=argA;go_function=L-glutamate N-acetyltransferase activity|0004042||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461909.1;locus_tag=C9F05_RS21860;product=amino-acid N-acetyltransferase;protein_id=WP_000588964.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	42244	44079	.	-	.	ID=gene-C9F05_RS21865;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=C9F05_RS21865;old_locus_tag=C9F05_22450
NZ_PYKE01000320.1	Protein Homology	CDS	42244	44079	.	-	0	ID=cds-WP_135370632.1;Parent=gene-C9F05_RS21865;Dbxref=GenBank:WP_135370632.1;Name=WP_135370632.1;Ontology_term=GO:0006302,GO:0006310,GO:0004386,GO:0008854,GO:0009338;gbkey=CDS;gene=recD;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=helicase activity|0004386||IEA,exodeoxyribonuclease V activity|0008854||IEA;go_process=double-strand break repair|0006302||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461910.1;locus_tag=C9F05_RS21865;product=exodeoxyribonuclease V subunit alpha;protein_id=WP_135370632.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	44076	47621	.	-	.	ID=gene-C9F05_RS21870;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=C9F05_RS21870;old_locus_tag=C9F05_22455
NZ_PYKE01000320.1	Protein Homology	CDS	44076	47621	.	-	0	ID=cds-WP_135370633.1;Parent=gene-C9F05_RS21870;Dbxref=GenBank:WP_135370633.1;Name=WP_135370633.1;Ontology_term=GO:0006281,GO:0003677,GO:0003678,GO:0005524,GO:0008854;gbkey=CDS;gene=recB;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461911.1;locus_tag=C9F05_RS21870;product=exodeoxyribonuclease V subunit beta;protein_id=WP_135370633.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	47614	50502	.	-	.	ID=gene-C9F05_RS21875;Name=ptrA;gbkey=Gene;gene=ptrA;gene_biotype=protein_coding;locus_tag=C9F05_RS21875;old_locus_tag=C9F05_22460
NZ_PYKE01000320.1	Protein Homology	CDS	47614	50502	.	-	0	ID=cds-WP_135370634.1;Parent=gene-C9F05_RS21875;Dbxref=GenBank:WP_135370634.1;Name=WP_135370634.1;Ontology_term=GO:0006508,GO:0004222,GO:0046872;gbkey=CDS;gene=ptrA;go_function=metalloendopeptidase activity|0004222||IEA,metal ion binding|0046872||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461912.1;locus_tag=C9F05_RS21875;product=pitrilysin;protein_id=WP_135370634.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	50680	54051	.	-	.	ID=gene-C9F05_RS21880;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=C9F05_RS21880;old_locus_tag=C9F05_22465
NZ_PYKE01000320.1	Protein Homology	CDS	50680	54051	.	-	0	ID=cds-WP_000946832.1;Parent=gene-C9F05_RS21880;Dbxref=GenBank:WP_000946832.1;Name=WP_000946832.1;Ontology_term=GO:0008854,GO:0009338;gbkey=CDS;gene=recC;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461913.2;locus_tag=C9F05_RS21880;product=exodeoxyribonuclease V subunit gamma;protein_id=WP_000946832.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	54067	54387	.	-	.	ID=gene-C9F05_RS21885;Name=C9F05_RS21885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21885;old_locus_tag=C9F05_22470
NZ_PYKE01000320.1	Protein Homology	CDS	54067	54387	.	-	0	ID=cds-WP_000019291.1;Parent=gene-C9F05_RS21885;Dbxref=GenBank:WP_000019291.1;Name=WP_000019291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461914.1;locus_tag=C9F05_RS21885;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=WP_000019291.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	54372	54779	.	-	.	ID=gene-C9F05_RS21890;Name=C9F05_RS21890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21890;old_locus_tag=C9F05_22475
NZ_PYKE01000320.1	Protein Homology	CDS	54372	54779	.	-	0	ID=cds-WP_001078532.1;Parent=gene-C9F05_RS21890;Dbxref=GenBank:WP_001078532.1;Name=WP_001078532.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461915.1;locus_tag=C9F05_RS21890;product=DUF2509 family protein;protein_id=WP_001078532.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	54776	55339	.	-	.	ID=gene-C9F05_RS21895;Name=C9F05_RS21895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21895;old_locus_tag=C9F05_22480
NZ_PYKE01000320.1	Protein Homology	CDS	54776	55339	.	-	0	ID=cds-WP_000029153.1;Parent=gene-C9F05_RS21895;Dbxref=GenBank:WP_000029153.1;Name=WP_000029153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461916.1;locus_tag=C9F05_RS21895;product=prepilin peptidase-dependent protein;protein_id=WP_000029153.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	55330	55800	.	-	.	ID=gene-C9F05_RS21900;Name=C9F05_RS21900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21900;old_locus_tag=C9F05_22485
NZ_PYKE01000320.1	Protein Homology	CDS	55330	55800	.	-	0	ID=cds-WP_000744668.1;Parent=gene-C9F05_RS21900;Dbxref=GenBank:WP_000744668.1;Name=WP_000744668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019077605.1;locus_tag=C9F05_RS21900;product=prepilin peptidase-dependent protein;protein_id=WP_000744668.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	55985	56779	.	-	.	ID=gene-C9F05_RS21910;Name=thyA;gbkey=Gene;gene=thyA;gene_biotype=protein_coding;locus_tag=C9F05_RS21910;old_locus_tag=C9F05_22495
NZ_PYKE01000320.1	Protein Homology	CDS	55985	56779	.	-	0	ID=cds-WP_000816247.1;Parent=gene-C9F05_RS21910;Dbxref=GenBank:WP_000816247.1;Name=WP_000816247.1;Ontology_term=GO:0006231,GO:0004799;gbkey=CDS;gene=thyA;go_function=thymidylate synthase activity|0004799||IEA;go_process=dTMP biosynthetic process|0006231||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123418.1;locus_tag=C9F05_RS21910;product=thymidylate synthase;protein_id=WP_000816247.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	56786	57661	.	-	.	ID=gene-C9F05_RS21915;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=C9F05_RS21915;old_locus_tag=C9F05_22500
NZ_PYKE01000320.1	Protein Homology	CDS	56786	57661	.	-	0	ID=cds-WP_000204645.1;Parent=gene-C9F05_RS21915;Dbxref=GenBank:WP_000204645.1;Name=WP_000204645.1;Ontology_term=GO:0009249,GO:0008961,GO:0016020;gbkey=CDS;gene=lgt;go_component=membrane|0016020||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461919.1;locus_tag=C9F05_RS21915;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_000204645.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	57877	60123	.	-	.	ID=gene-C9F05_RS21920;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=C9F05_RS21920;old_locus_tag=C9F05_22505
NZ_PYKE01000320.1	Protein Homology	CDS	57877	60123	.	-	0	ID=cds-WP_000957888.1;Parent=gene-C9F05_RS21920;Dbxref=GenBank:WP_000957888.1;Name=WP_000957888.1;gbkey=CDS;gene=ptsP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461920.1;locus_tag=C9F05_RS21920;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_000957888.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	60136	60666	.	-	.	ID=gene-C9F05_RS21925;Name=rppH;gbkey=Gene;gene=rppH;gene_biotype=protein_coding;locus_tag=C9F05_RS21925;old_locus_tag=C9F05_22510
NZ_PYKE01000320.1	Protein Homology	CDS	60136	60666	.	-	0	ID=cds-WP_000564481.1;Parent=gene-C9F05_RS21925;Dbxref=GenBank:WP_000564481.1;Name=WP_000564481.1;Ontology_term=GO:0016787;gbkey=CDS;gene=rppH;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001655775.1;locus_tag=C9F05_RS21925;product=RNA pyrophosphohydrolase;protein_id=WP_000564481.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	61349	62044	.	+	.	ID=gene-C9F05_RS21930;Name=mutH;gbkey=Gene;gene=mutH;gene_biotype=protein_coding;locus_tag=C9F05_RS21930;old_locus_tag=C9F05_22515
NZ_PYKE01000320.1	Protein Homology	CDS	61349	62044	.	+	0	ID=cds-WP_001274930.1;Parent=gene-C9F05_RS21930;Dbxref=GenBank:WP_001274930.1;Name=WP_001274930.1;Ontology_term=GO:0006304,GO:0004519;gbkey=CDS;gene=mutH;go_function=endonuclease activity|0004519||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461922.1;locus_tag=C9F05_RS21930;product=DNA mismatch repair endonuclease MutH;protein_id=WP_001274930.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	62226	62939	.	+	.	ID=gene-C9F05_RS21935;Name=C9F05_RS21935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21935;old_locus_tag=C9F05_22520
NZ_PYKE01000320.1	Protein Homology	CDS	62226	62939	.	+	0	ID=cds-WP_000895635.1;Parent=gene-C9F05_RS21935;Dbxref=GenBank:WP_000895635.1;Name=WP_000895635.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461923.1;locus_tag=C9F05_RS21935;product=TerC family protein;protein_id=WP_000895635.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	63110	63328	.	+	.	ID=gene-C9F05_RS21940;Name=C9F05_RS21940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21940;old_locus_tag=C9F05_22525
NZ_PYKE01000320.1	Protein Homology	CDS	63110	63328	.	+	0	ID=cds-WP_000758662.1;Parent=gene-C9F05_RS21940;Dbxref=GenBank:WP_000758662.1;Name=WP_000758662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461924.1;locus_tag=C9F05_RS21940;product=YgdI/YgdR family lipoprotein;protein_id=WP_000758662.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	63519	64559	.	+	.	ID=gene-C9F05_RS21945;Name=C9F05_RS21945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21945;old_locus_tag=C9F05_22530
NZ_PYKE01000320.1	Protein Homology	CDS	63519	64559	.	+	0	ID=cds-WP_000558960.1;Parent=gene-C9F05_RS21945;Dbxref=GenBank:WP_000558960.1;Name=WP_000558960.1;Ontology_term=GO:0047834;gbkey=CDS;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461925.1;locus_tag=C9F05_RS21945;product=NADP(H)-dependent aldo-keto reductase;protein_id=WP_000558960.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	64646	65848	.	-	.	ID=gene-C9F05_RS21950;Name=lplT;gbkey=Gene;gene=lplT;gene_biotype=protein_coding;locus_tag=C9F05_RS21950;old_locus_tag=C9F05_22535
NZ_PYKE01000320.1	Protein Homology	CDS	64646	65848	.	-	0	ID=cds-WP_000004686.1;Parent=gene-C9F05_RS21950;Dbxref=GenBank:WP_000004686.1;Name=WP_000004686.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=lplT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461926.1;locus_tag=C9F05_RS21950;product=lysophospholipid transporter LplT;protein_id=WP_000004686.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	65841	68000	.	-	.	ID=gene-C9F05_RS21955;Name=aas;gbkey=Gene;gene=aas;gene_biotype=protein_coding;locus_tag=C9F05_RS21955;old_locus_tag=C9F05_22540
NZ_PYKE01000320.1	Protein Homology	CDS	65841	68000	.	-	0	ID=cds-WP_000896101.1;Parent=gene-C9F05_RS21955;Dbxref=GenBank:WP_000896101.1;Name=WP_000896101.1;Ontology_term=GO:0006631,GO:0008654,GO:0008779,GO:0008922;gbkey=CDS;gene=aas;go_function=acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity|0008779||IEA,long-chain fatty acid [acyl-carrier-protein] ligase activity|0008922||IEA;go_process=fatty acid metabolic process|0006631||IEA,phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461927.1;locus_tag=C9F05_RS21955;product=bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase;protein_id=WP_000896101.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	68593	69621	.	+	.	ID=gene-C9F05_RS21970;Name=galR;gbkey=Gene;gene=galR;gene_biotype=protein_coding;locus_tag=C9F05_RS21970;old_locus_tag=C9F05_22555
NZ_PYKE01000320.1	Protein Homology	CDS	68593	69621	.	+	0	ID=cds-WP_080249409.1;Parent=gene-C9F05_RS21970;Dbxref=GenBank:WP_080249409.1;Name=WP_080249409.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=galR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461928.1;locus_tag=C9F05_RS21970;product=HTH-type transcriptional regulator GalR;protein_id=WP_080249409.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	69632	70654	.	+	.	ID=gene-C9F05_RS21975;Name=C9F05_RS21975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21975;old_locus_tag=C9F05_22560
NZ_PYKE01000320.1	Protein Homology	CDS	69632	70654	.	+	0	ID=cds-WP_000968338.1;Parent=gene-C9F05_RS21975;Dbxref=GenBank:WP_000968338.1;Name=WP_000968338.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461929.1;locus_tag=C9F05_RS21975;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000968338.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	70664	71926	.	-	.	ID=gene-C9F05_RS21980;Name=lysA;gbkey=Gene;gene=lysA;gene_biotype=protein_coding;locus_tag=C9F05_RS21980;old_locus_tag=C9F05_22565
NZ_PYKE01000320.1	Protein Homology	CDS	70664	71926	.	-	0	ID=cds-WP_000056587.1;Parent=gene-C9F05_RS21980;Dbxref=GenBank:WP_000056587.1;Name=WP_000056587.1;Ontology_term=GO:0009089,GO:0008836;gbkey=CDS;gene=lysA;go_function=diaminopimelate decarboxylase activity|0008836||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461930.1;locus_tag=C9F05_RS21980;product=diaminopimelate decarboxylase;protein_id=WP_000056587.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	72044	72979	.	+	.	ID=gene-C9F05_RS21985;Name=C9F05_RS21985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21985;old_locus_tag=C9F05_22570
NZ_PYKE01000320.1	Protein Homology	CDS	72044	72979	.	+	0	ID=cds-WP_000741798.1;Parent=gene-C9F05_RS21985;Dbxref=GenBank:WP_000741798.1;Name=WP_000741798.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461931.1;locus_tag=C9F05_RS21985;product=LysR family transcriptional regulator;protein_id=WP_000741798.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	72951	73658	.	-	.	ID=gene-C9F05_RS21990;Name=C9F05_RS21990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21990;old_locus_tag=C9F05_22575
NZ_PYKE01000320.1	Protein Homology	CDS	72951	73658	.	-	0	ID=cds-WP_135370635.1;Parent=gene-C9F05_RS21990;Dbxref=GenBank:WP_135370635.1;Name=WP_135370635.1;Ontology_term=GO:0008152,GO:0016855;gbkey=CDS;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461932.1;locus_tag=C9F05_RS21990;product=aspartate/glutamate racemase;protein_id=WP_135370635.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	73771	75189	.	-	.	ID=gene-C9F05_RS21995;Name=araE;gbkey=Gene;gene=araE;gene_biotype=protein_coding;locus_tag=C9F05_RS21995;old_locus_tag=C9F05_22580
NZ_PYKE01000320.1	Protein Homology	CDS	73771	75189	.	-	0	ID=cds-WP_000253650.1;Parent=gene-C9F05_RS21995;Dbxref=GenBank:WP_000253650.1;Name=WP_000253650.1;gbkey=CDS;gene=araE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461933.1;locus_tag=C9F05_RS21995;product=arabinose-proton symporter AraE;protein_id=WP_000253650.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	75543	76304	.	-	.	ID=gene-C9F05_RS22000;Name=kduD;gbkey=Gene;gene=kduD;gene_biotype=protein_coding;locus_tag=C9F05_RS22000;old_locus_tag=C9F05_22585
NZ_PYKE01000320.1	Protein Homology	CDS	75543	76304	.	-	0	ID=cds-WP_000602490.1;Parent=gene-C9F05_RS22000;Dbxref=GenBank:WP_000602490.1;Name=WP_000602490.1;Ontology_term=GO:0000272,GO:0016491,GO:0051287;gbkey=CDS;gene=kduD;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461934.1;locus_tag=C9F05_RS22000;product=2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;protein_id=WP_000602490.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	76361	77197	.	-	.	ID=gene-C9F05_RS22005;Name=kduI;gbkey=Gene;gene=kduI;gene_biotype=protein_coding;locus_tag=C9F05_RS22005;old_locus_tag=C9F05_22590
NZ_PYKE01000320.1	Protein Homology	CDS	76361	77197	.	-	0	ID=cds-WP_000383270.1;Parent=gene-C9F05_RS22005;Dbxref=GenBank:WP_000383270.1;Name=WP_000383270.1;Ontology_term=GO:0045490,GO:0008697;gbkey=CDS;gene=kduI;go_function=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity|0008697||IEA;go_process=pectin catabolic process|0045490||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461935.1;locus_tag=C9F05_RS22005;product=5-dehydro-4-deoxy-D-glucuronate isomerase;protein_id=WP_000383270.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	77626	78804	.	-	.	ID=gene-C9F05_RS22015;Name=C9F05_RS22015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22015;old_locus_tag=C9F05_22600
NZ_PYKE01000320.1	Protein Homology	CDS	77626	78804	.	-	0	ID=cds-WP_000665977.1;Parent=gene-C9F05_RS22015;Dbxref=GenBank:WP_000665977.1;Name=WP_000665977.1;Ontology_term=GO:0003985;gbkey=CDS;go_function=acetyl-CoA C-acetyltransferase activity|0003985||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461936.1;locus_tag=C9F05_RS22015;product=acetyl-CoA C-acetyltransferase;protein_id=WP_000665977.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	78927	79790	.	-	.	ID=gene-C9F05_RS22020;Name=C9F05_RS22020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22020;old_locus_tag=C9F05_22605
NZ_PYKE01000320.1	Protein Homology	CDS	78927	79790	.	-	0	ID=cds-WP_017465481.1;Parent=gene-C9F05_RS22020;Dbxref=GenBank:WP_017465481.1;Name=WP_017465481.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461937.1;locus_tag=C9F05_RS22020;product=LysR family transcriptional regulator;protein_id=WP_017465481.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	79894	80349	.	+	.	ID=gene-C9F05_RS22025;Name=C9F05_RS22025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22025;old_locus_tag=C9F05_22610
NZ_PYKE01000320.1	Protein Homology	CDS	79894	80349	.	+	0	ID=cds-WP_017465480.1;Parent=gene-C9F05_RS22025;Dbxref=GenBank:WP_017465480.1;Name=WP_017465480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465480.1;locus_tag=C9F05_RS22025;product=multidrug/biocide efflux PACE transporter;protein_id=WP_017465480.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	80491	81720	.	+	.	ID=gene-C9F05_RS22030;Name=C9F05_RS22030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22030;old_locus_tag=C9F05_22615
NZ_PYKE01000320.1	Protein Homology	CDS	80491	81720	.	+	0	ID=cds-WP_000036824.1;Parent=gene-C9F05_RS22030;Dbxref=GenBank:WP_000036824.1;Name=WP_000036824.1;Ontology_term=GO:0003333,GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transmembrane transport|0003333||IEA,amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461939.1;locus_tag=C9F05_RS22030;product=amino acid permease;protein_id=WP_000036824.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	pseudogene	81751	82024	.	-	.	ID=gene-C9F05_RS22035;Name=rcnR;gbkey=Gene;gene=rcnR;gene_biotype=pseudogene;locus_tag=C9F05_RS22035;old_locus_tag=C9F05_22620;pseudo=true
NZ_PYKE01000320.1	Protein Homology	CDS	81751	82024	.	-	0	ID=cds-C9F05_RS22035;Parent=gene-C9F05_RS22035;Note=frameshifted;gbkey=CDS;gene=rcnR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461940.1;locus_tag=C9F05_RS22035;product=Ni(II)/Co(II)-binding transcriptional repressor RcnR;pseudo=true;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	82147	82995	.	+	.	ID=gene-C9F05_RS22040;Name=C9F05_RS22040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22040;old_locus_tag=C9F05_22625
NZ_PYKE01000320.1	Protein Homology	CDS	82147	82995	.	+	0	ID=cds-WP_000503687.1;Parent=gene-C9F05_RS22040;Dbxref=GenBank:WP_000503687.1;Name=WP_000503687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461941.1;locus_tag=C9F05_RS22040;product=nickel/cobalt efflux protein RcnA;protein_id=WP_000503687.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	83200	83958	.	-	.	ID=gene-C9F05_RS22045;Name=C9F05_RS22045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22045;old_locus_tag=C9F05_22630
NZ_PYKE01000320.1	Protein Homology	CDS	83200	83958	.	-	0	ID=cds-WP_023232680.1;Parent=gene-C9F05_RS22045;Dbxref=GenBank:WP_023232680.1;Name=WP_023232680.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461942.1;locus_tag=C9F05_RS22045;product=hypothetical protein;protein_id=WP_023232680.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	83945	84457	.	-	.	ID=gene-C9F05_RS22050;Name=C9F05_RS22050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22050;old_locus_tag=C9F05_22635
NZ_PYKE01000320.1	Protein Homology	CDS	83945	84457	.	-	0	ID=cds-WP_080232011.1;Parent=gene-C9F05_RS22050;Dbxref=GenBank:WP_080232011.1;Name=WP_080232011.1;Ontology_term=GO:0006351;gbkey=CDS;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001727965.1;locus_tag=C9F05_RS22050;product=CaiF/GrlA family transcriptional regulator;protein_id=WP_080232011.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	84601	85674	.	-	.	ID=gene-C9F05_RS22055;Name=C9F05_RS22055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22055;old_locus_tag=C9F05_22640
NZ_PYKE01000320.1	Protein Homology	CDS	84601	85674	.	-	0	ID=cds-WP_047606484.1;Parent=gene-C9F05_RS22055;Dbxref=GenBank:WP_047606484.1;Name=WP_047606484.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461943.1;locus_tag=C9F05_RS22055;product=membrane protein;protein_id=WP_047606484.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	85671	86414	.	-	.	ID=gene-C9F05_RS22060;Name=stdC;gbkey=Gene;gene=stdC;gene_biotype=protein_coding;locus_tag=C9F05_RS22060;old_locus_tag=C9F05_22645
NZ_PYKE01000320.1	Protein Homology	CDS	85671	86414	.	-	0	ID=cds-WP_080159976.1;Parent=gene-C9F05_RS22060;Dbxref=GenBank:WP_080159976.1;Name=WP_080159976.1;gbkey=CDS;gene=stdC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461944.1;locus_tag=C9F05_RS22060;product=fimbrial biogenesis chaperone StdC;protein_id=WP_080159976.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	86455	88944	.	-	.	ID=gene-C9F05_RS22065;Name=stdB;gbkey=Gene;gene=stdB;gene_biotype=protein_coding;locus_tag=C9F05_RS22065;old_locus_tag=C9F05_22650
NZ_PYKE01000320.1	Protein Homology	CDS	86455	88944	.	-	0	ID=cds-WP_135370636.1;Parent=gene-C9F05_RS22065;Dbxref=GenBank:WP_135370636.1;Name=WP_135370636.1;gbkey=CDS;gene=stdB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461945.1;locus_tag=C9F05_RS22065;product=fimbrial outer membrane usher protein StdB;protein_id=WP_135370636.1;transl_table=11
NZ_PYKE01000320.1	RefSeq	gene	89064	89654	.	-	.	ID=gene-C9F05_RS22070;Name=C9F05_RS22070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22070;old_locus_tag=C9F05_22655
NZ_PYKE01000320.1	Protein Homology	CDS	89064	89654	.	-	0	ID=cds-WP_135370637.1;Parent=gene-C9F05_RS22070;Dbxref=GenBank:WP_135370637.1;Name=WP_135370637.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015406296.1;locus_tag=C9F05_RS22070;product=fimbrial protein;protein_id=WP_135370637.1;transl_table=11
##sequence-region NZ_PYKE01000252.1 1 11772
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000252.1	RefSeq	region	1	11772	.	+	.	ID=NZ_PYKE01000252.1:1..11772;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000252.1	RefSeq	gene	1	220	.	+	.	ID=gene-C9F05_RS23700;Name=C9F05_RS23700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23700;old_locus_tag=C9F05_16905;partial=true;start_range=.,1
NZ_PYKE01000252.1	GeneMarkS-2+	CDS	1	220	.	+	1	ID=cds-WP_217810207.1;Parent=gene-C9F05_RS23700;Dbxref=GenBank:WP_217810207.1;Name=WP_217810207.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23700;partial=true;product=hypothetical protein;protein_id=WP_217810207.1;start_range=.,1;transl_table=11
NZ_PYKE01000252.1	RefSeq	gene	619	1086	.	+	.	ID=gene-C9F05_RS16440;Name=C9F05_RS16440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16440;old_locus_tag=C9F05_16910
NZ_PYKE01000252.1	GeneMarkS-2+	CDS	619	1086	.	+	0	ID=cds-WP_135370466.1;Parent=gene-C9F05_RS16440;Dbxref=GenBank:WP_135370466.1;Name=WP_135370466.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS16440;product=hypothetical protein;protein_id=WP_135370466.1;transl_table=11
NZ_PYKE01000252.1	RefSeq	gene	1083	2783	.	+	.	ID=gene-C9F05_RS16445;Name=C9F05_RS16445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16445;old_locus_tag=C9F05_16915
NZ_PYKE01000252.1	Protein Homology	CDS	1083	2783	.	+	0	ID=cds-WP_135370467.1;Parent=gene-C9F05_RS16445;Dbxref=GenBank:WP_135370467.1;Name=WP_135370467.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015211.6;locus_tag=C9F05_RS16445;product=terminase large subunit domain-containing protein;protein_id=WP_135370467.1;transl_table=11
NZ_PYKE01000252.1	RefSeq	gene	2780	4780	.	+	.	ID=gene-C9F05_RS16450;Name=C9F05_RS16450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16450;old_locus_tag=C9F05_16920
NZ_PYKE01000252.1	Protein Homology	CDS	2780	4780	.	+	0	ID=cds-WP_135370468.1;Parent=gene-C9F05_RS16450;Dbxref=GenBank:WP_135370468.1;Name=WP_135370468.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049598.1;locus_tag=C9F05_RS16450;product=portal protein;protein_id=WP_135370468.1;transl_table=11
NZ_PYKE01000252.1	RefSeq	gene	4790	5683	.	+	.	ID=gene-C9F05_RS16455;Name=C9F05_RS16455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16455;old_locus_tag=C9F05_16925
NZ_PYKE01000252.1	GeneMarkS-2+	CDS	4790	5683	.	+	0	ID=cds-WP_135370469.1;Parent=gene-C9F05_RS16455;Dbxref=GenBank:WP_135370469.1;Name=WP_135370469.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS16455;product=hypothetical protein;protein_id=WP_135370469.1;transl_table=11
NZ_PYKE01000252.1	RefSeq	gene	5683	6600	.	+	.	ID=gene-C9F05_RS16460;Name=C9F05_RS16460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16460;old_locus_tag=C9F05_16930
NZ_PYKE01000252.1	GeneMarkS-2+	CDS	5683	6600	.	+	0	ID=cds-WP_135370470.1;Parent=gene-C9F05_RS16460;Dbxref=GenBank:WP_135370470.1;Name=WP_135370470.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS16460;product=hypothetical protein;protein_id=WP_135370470.1;transl_table=11
NZ_PYKE01000252.1	RefSeq	gene	7001	7510	.	+	.	ID=gene-C9F05_RS16465;Name=C9F05_RS16465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16465;old_locus_tag=C9F05_16940
NZ_PYKE01000252.1	GeneMarkS-2+	CDS	7001	7510	.	+	0	ID=cds-WP_135370471.1;Parent=gene-C9F05_RS16465;Dbxref=GenBank:WP_135370471.1;Name=WP_135370471.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS16465;product=hypothetical protein;protein_id=WP_135370471.1;transl_table=11
NZ_PYKE01000252.1	RefSeq	gene	7507	8730	.	+	.	ID=gene-C9F05_RS16470;Name=C9F05_RS16470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16470;old_locus_tag=C9F05_16945
NZ_PYKE01000252.1	GeneMarkS-2+	CDS	7507	8730	.	+	0	ID=cds-WP_135370472.1;Parent=gene-C9F05_RS16470;Dbxref=GenBank:WP_135370472.1;Name=WP_135370472.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS16470;product=hypothetical protein;protein_id=WP_135370472.1;transl_table=11
NZ_PYKE01000252.1	RefSeq	gene	8727	10730	.	+	.	ID=gene-C9F05_RS16475;Name=C9F05_RS16475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16475;old_locus_tag=C9F05_16950
NZ_PYKE01000252.1	GeneMarkS-2+	CDS	8727	10730	.	+	0	ID=cds-WP_135370473.1;Parent=gene-C9F05_RS16475;Dbxref=GenBank:WP_135370473.1;Name=WP_135370473.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS16475;product=hypothetical protein;protein_id=WP_135370473.1;transl_table=11
NZ_PYKE01000252.1	RefSeq	gene	10825	11772	.	+	.	ID=gene-C9F05_RS16480;Name=C9F05_RS16480;end_range=11772,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16480;old_locus_tag=C9F05_16955;partial=true
NZ_PYKE01000252.1	Protein Homology	CDS	10825	11772	.	+	0	ID=cds-WP_135370474.1;Parent=gene-C9F05_RS16480;Dbxref=GenBank:WP_135370474.1;Name=WP_135370474.1;end_range=11772,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF036552.6;locus_tag=C9F05_RS16480;partial=true;product=SU10 major capsid protein;protein_id=WP_135370474.1;transl_table=11
##sequence-region NZ_PYKE01000217.1 1 11672
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000217.1	RefSeq	region	1	11672	.	+	.	ID=NZ_PYKE01000217.1:1..11672;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000217.1	RefSeq	gene	243	851	.	+	.	ID=gene-C9F05_RS13900;Name=C9F05_RS13900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13900;old_locus_tag=C9F05_14295
NZ_PYKE01000217.1	Protein Homology	CDS	243	851	.	+	0	ID=cds-WP_135370373.1;Parent=gene-C9F05_RS13900;Dbxref=GenBank:WP_135370373.1;Name=WP_135370373.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049196.2;locus_tag=C9F05_RS13900;product=phage adaptor protein;protein_id=WP_135370373.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	838	1086	.	+	.	ID=gene-C9F05_RS13905;Name=C9F05_RS13905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13905;old_locus_tag=C9F05_14300
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	838	1086	.	+	0	ID=cds-WP_023182302.1;Parent=gene-C9F05_RS13905;Dbxref=GenBank:WP_023182302.1;Name=WP_023182302.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13905;product=hypothetical protein;protein_id=WP_023182302.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	1076	1888	.	+	.	ID=gene-C9F05_RS13910;Name=C9F05_RS13910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13910;old_locus_tag=C9F05_14305
NZ_PYKE01000217.1	Protein Homology	CDS	1076	1888	.	+	0	ID=cds-WP_135370374.1;Parent=gene-C9F05_RS13910;Dbxref=GenBank:WP_135370374.1;Name=WP_135370374.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF046467.2;locus_tag=C9F05_RS13910;product=phage baseplate protein;protein_id=WP_135370374.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	2470	3621	.	+	.	ID=gene-C9F05_RS13915;Name=C9F05_RS13915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13915;old_locus_tag=C9F05_14310
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	2470	3621	.	+	0	ID=cds-WP_135370375.1;Parent=gene-C9F05_RS13915;Dbxref=GenBank:WP_135370375.1;Name=WP_135370375.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13915;product=hypothetical protein;protein_id=WP_135370375.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	3618	4277	.	+	.	ID=gene-C9F05_RS13920;Name=C9F05_RS13920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13920;old_locus_tag=C9F05_14315
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	3618	4277	.	+	0	ID=cds-WP_135370376.1;Parent=gene-C9F05_RS13920;Dbxref=GenBank:WP_135370376.1;Name=WP_135370376.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13920;product=hypothetical protein;protein_id=WP_135370376.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	4525	4935	.	+	.	ID=gene-C9F05_RS13925;Name=C9F05_RS13925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13925;old_locus_tag=C9F05_14320
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	4525	4935	.	+	0	ID=cds-WP_135370377.1;Parent=gene-C9F05_RS13925;Dbxref=GenBank:WP_135370377.1;Name=WP_135370377.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13925;product=hypothetical protein;protein_id=WP_135370377.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	5117	5749	.	+	.	ID=gene-C9F05_RS13930;Name=C9F05_RS13930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13930;old_locus_tag=C9F05_14325
NZ_PYKE01000217.1	Protein Homology	CDS	5117	5749	.	+	0	ID=cds-WP_135370378.1;Parent=gene-C9F05_RS13930;Dbxref=GenBank:WP_135370378.1;Name=WP_135370378.1;Ontology_term=GO:0006310,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011094050.1;locus_tag=C9F05_RS13930;product=recombinase family protein;protein_id=WP_135370378.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	5828	6004	.	+	.	ID=gene-C9F05_RS23570;Name=C9F05_RS23570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23570
NZ_PYKE01000217.1	Protein Homology	CDS	5828	6004	.	+	0	ID=cds-WP_167851638.1;Parent=gene-C9F05_RS23570;Dbxref=GenBank:WP_167851638.1;Name=WP_167851638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009113099.1;locus_tag=C9F05_RS23570;product=hypothetical protein;protein_id=WP_167851638.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	6082	6315	.	+	.	ID=gene-C9F05_RS13935;Name=C9F05_RS13935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13935;old_locus_tag=C9F05_14330
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	6082	6315	.	+	0	ID=cds-WP_135370379.1;Parent=gene-C9F05_RS13935;Dbxref=GenBank:WP_135370379.1;Name=WP_135370379.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13935;product=hypothetical protein;protein_id=WP_135370379.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	6305	6616	.	+	.	ID=gene-C9F05_RS24050;Name=C9F05_RS24050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24050;old_locus_tag=C9F05_14335
NZ_PYKE01000217.1	Protein Homology	CDS	6305	6616	.	+	0	ID=cds-WP_135370380.1;Parent=gene-C9F05_RS24050;Dbxref=GenBank:WP_135370380.1;Name=WP_135370380.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF028096.6;locus_tag=C9F05_RS24050;product=Ref family recombination enhancement nuclease;protein_id=WP_135370380.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	6836	7288	.	+	.	ID=gene-C9F05_RS13945;Name=C9F05_RS13945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13945;old_locus_tag=C9F05_14340
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	6836	7288	.	+	0	ID=cds-WP_135370381.1;Parent=gene-C9F05_RS13945;Dbxref=GenBank:WP_135370381.1;Name=WP_135370381.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13945;product=hypothetical protein;protein_id=WP_135370381.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	7308	7658	.	+	.	ID=gene-C9F05_RS13950;Name=C9F05_RS13950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13950
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	7308	7658	.	+	0	ID=cds-WP_167854911.1;Parent=gene-C9F05_RS13950;Dbxref=GenBank:WP_167854911.1;Name=WP_167854911.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13950;product=hypothetical protein;protein_id=WP_167854911.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	8206	8520	.	+	.	ID=gene-C9F05_RS13955;Name=C9F05_RS13955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13955;old_locus_tag=C9F05_14355
NZ_PYKE01000217.1	Protein Homology	CDS	8206	8520	.	+	0	ID=cds-WP_135370383.1;Parent=gene-C9F05_RS13955;Dbxref=GenBank:WP_135370383.1;Name=WP_135370383.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: protein motif:HMM:NF024804.6;locus_tag=C9F05_RS13955;product=winged helix-turn-helix domain-containing protein;protein_id=WP_135370383.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	8517	8720	.	+	.	ID=gene-C9F05_RS13960;Name=C9F05_RS13960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13960;old_locus_tag=C9F05_14360
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	8517	8720	.	+	0	ID=cds-WP_135370384.1;Parent=gene-C9F05_RS13960;Dbxref=GenBank:WP_135370384.1;Name=WP_135370384.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13960;product=hypothetical protein;protein_id=WP_135370384.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	8954	9283	.	+	.	ID=gene-C9F05_RS13965;Name=C9F05_RS13965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13965;old_locus_tag=C9F05_14365
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	8954	9283	.	+	0	ID=cds-WP_135370385.1;Parent=gene-C9F05_RS13965;Dbxref=GenBank:WP_135370385.1;Name=WP_135370385.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13965;product=hypothetical protein;protein_id=WP_135370385.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	9273	9449	.	+	.	ID=gene-C9F05_RS23575;Name=C9F05_RS23575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23575
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	9273	9449	.	+	0	ID=cds-WP_167851637.1;Parent=gene-C9F05_RS23575;Dbxref=GenBank:WP_167851637.1;Name=WP_167851637.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23575;product=hypothetical protein;protein_id=WP_167851637.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	9765	10121	.	+	.	ID=gene-C9F05_RS13975;Name=C9F05_RS13975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13975;old_locus_tag=C9F05_14375
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	9765	10121	.	+	0	ID=cds-WP_135370387.1;Parent=gene-C9F05_RS13975;Dbxref=GenBank:WP_135370387.1;Name=WP_135370387.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS13975;product=hypothetical protein;protein_id=WP_135370387.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	10221	10391	.	+	.	ID=gene-C9F05_RS23580;Name=C9F05_RS23580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23580
NZ_PYKE01000217.1	GeneMarkS-2+	CDS	10221	10391	.	+	0	ID=cds-WP_167851636.1;Parent=gene-C9F05_RS23580;Dbxref=GenBank:WP_167851636.1;Name=WP_167851636.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23580;product=hypothetical protein;protein_id=WP_167851636.1;transl_table=11
NZ_PYKE01000217.1	RefSeq	gene	10398	11606	.	-	.	ID=gene-C9F05_RS13980;Name=C9F05_RS13980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13980;old_locus_tag=C9F05_14380
NZ_PYKE01000217.1	Protein Homology	CDS	10398	11606	.	-	0	ID=cds-WP_135370388.1;Parent=gene-C9F05_RS13980;Dbxref=GenBank:WP_135370388.1;Name=WP_135370388.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012987851.1;locus_tag=C9F05_RS13980;product=tyrosine-type recombinase/integrase;protein_id=WP_135370388.1;transl_table=11
##sequence-region NZ_PYKE01000055.1 1 11537
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000055.1	RefSeq	region	1	11537	.	+	.	ID=NZ_PYKE01000055.1:1..11537;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000055.1	RefSeq	gene	181	1425	.	+	.	ID=gene-C9F05_RS03320;Name=sstT;gbkey=Gene;gene=sstT;gene_biotype=protein_coding;locus_tag=C9F05_RS03320;old_locus_tag=C9F05_03375
NZ_PYKE01000055.1	Protein Homology	CDS	181	1425	.	+	0	ID=cds-WP_000235363.1;Parent=gene-C9F05_RS03320;Dbxref=GenBank:WP_000235363.1;Name=WP_000235363.1;Ontology_term=GO:0015826,GO:0032329,GO:0015293,GO:0016020;gbkey=CDS;gene=sstT;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=threonine transport|0015826||IEA,serine transport|0032329||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462139.1;locus_tag=C9F05_RS03320;product=serine/threonine transporter SstT;protein_id=WP_000235363.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	1875	2537	.	+	.	ID=gene-C9F05_RS03325;Name=yqjA;gbkey=Gene;gene=yqjA;gene_biotype=protein_coding;locus_tag=C9F05_RS03325;old_locus_tag=C9F05_03385
NZ_PYKE01000055.1	Protein Homology	CDS	1875	2537	.	+	0	ID=cds-WP_000422143.1;Parent=gene-C9F05_RS03325;Dbxref=GenBank:WP_000422143.1;Name=WP_000422143.1;gbkey=CDS;gene=yqjA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462140.1;locus_tag=C9F05_RS03325;product=DedA family general envelope maintenance protein YqjA;protein_id=WP_000422143.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	2541	2924	.	+	.	ID=gene-C9F05_RS03330;Name=mzrA;gbkey=Gene;gene=mzrA;gene_biotype=protein_coding;locus_tag=C9F05_RS03330;old_locus_tag=C9F05_03390
NZ_PYKE01000055.1	Protein Homology	CDS	2541	2924	.	+	0	ID=cds-WP_000917516.1;Parent=gene-C9F05_RS03330;Dbxref=GenBank:WP_000917516.1;Name=WP_000917516.1;gbkey=CDS;gene=mzrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462141.1;locus_tag=C9F05_RS03330;product=EnvZ/OmpR regulon moderator MzrA;protein_id=WP_000917516.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	3070	3438	.	+	.	ID=gene-C9F05_RS03335;Name=C9F05_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03335;old_locus_tag=C9F05_03395
NZ_PYKE01000055.1	Protein Homology	CDS	3070	3438	.	+	0	ID=cds-WP_000877300.1;Parent=gene-C9F05_RS03335;Dbxref=GenBank:WP_000877300.1;Name=WP_000877300.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462142.1;locus_tag=C9F05_RS03335;product=DUF1090 domain-containing protein;protein_id=WP_000877300.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	3480	3785	.	+	.	ID=gene-C9F05_RS03340;Name=C9F05_RS03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03340;old_locus_tag=C9F05_03400
NZ_PYKE01000055.1	Protein Homology	CDS	3480	3785	.	+	0	ID=cds-WP_000031219.1;Parent=gene-C9F05_RS03340;Dbxref=GenBank:WP_000031219.1;Name=WP_000031219.1;Ontology_term=GO:0043022,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=ribosome binding|0043022||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462143.1;locus_tag=C9F05_RS03340;product=DUF883 family protein;protein_id=WP_000031219.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	3788	4186	.	+	.	ID=gene-C9F05_RS03345;Name=C9F05_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03345;old_locus_tag=C9F05_03405
NZ_PYKE01000055.1	Protein Homology	CDS	3788	4186	.	+	0	ID=cds-WP_000785626.1;Parent=gene-C9F05_RS03345;Dbxref=GenBank:WP_000785626.1;Name=WP_000785626.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462144.1;locus_tag=C9F05_RS03345;product=phage holin family protein;protein_id=WP_000785626.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	4183	4482	.	+	.	ID=gene-C9F05_RS03350;Name=C9F05_RS03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03350;old_locus_tag=C9F05_03410
NZ_PYKE01000055.1	Protein Homology	CDS	4183	4482	.	+	0	ID=cds-WP_000095496.1;Parent=gene-C9F05_RS03350;Dbxref=GenBank:WP_000095496.1;Name=WP_000095496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462145.1;locus_tag=C9F05_RS03350;product=YqjK-like family protein;protein_id=WP_000095496.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	4720	5112	.	+	.	ID=gene-C9F05_RS03355;Name=C9F05_RS03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03355;old_locus_tag=C9F05_03415
NZ_PYKE01000055.1	Protein Homology	CDS	4720	5112	.	+	0	ID=cds-WP_001592732.1;Parent=gene-C9F05_RS03355;Dbxref=GenBank:WP_001592732.1;Name=WP_001592732.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008503138.1;locus_tag=C9F05_RS03355;product=DoxX family protein;protein_id=WP_001592732.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	5180	6166	.	+	.	ID=gene-C9F05_RS03360;Name=C9F05_RS03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03360;old_locus_tag=C9F05_03420
NZ_PYKE01000055.1	Protein Homology	CDS	5180	6166	.	+	0	ID=cds-WP_023221320.1;Parent=gene-C9F05_RS03360;Dbxref=GenBank:WP_023221320.1;Name=WP_023221320.1;Ontology_term=GO:0004364,GO:0016491;gbkey=CDS;go_function=glutathione transferase activity|0004364||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462147.1;locus_tag=C9F05_RS03360;product=glutathione S-transferase family protein;protein_id=WP_023221320.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	6290	6655	.	+	.	ID=gene-C9F05_RS03365;Name=C9F05_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03365;old_locus_tag=C9F05_03425
NZ_PYKE01000055.1	Protein Homology	CDS	6290	6655	.	+	0	ID=cds-WP_000384139.1;Parent=gene-C9F05_RS03365;Dbxref=GenBank:WP_000384139.1;Name=WP_000384139.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462148.1;locus_tag=C9F05_RS03365;product=DUF805 domain-containing protein;protein_id=WP_000384139.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	6694	7590	.	-	.	ID=gene-C9F05_RS03370;Name=yhaJ;gbkey=Gene;gene=yhaJ;gene_biotype=protein_coding;locus_tag=C9F05_RS03370;old_locus_tag=C9F05_03430
NZ_PYKE01000055.1	Protein Homology	CDS	6694	7590	.	-	0	ID=cds-WP_001041026.1;Parent=gene-C9F05_RS03370;Dbxref=GenBank:WP_001041026.1;Name=WP_001041026.1;gbkey=CDS;gene=yhaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462149.1;locus_tag=C9F05_RS03370;product=DNA-binding transcriptional regulator YhaJ;protein_id=WP_001041026.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	7695	8396	.	+	.	ID=gene-C9F05_RS03375;Name=C9F05_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03375;old_locus_tag=C9F05_03435
NZ_PYKE01000055.1	Protein Homology	CDS	7695	8396	.	+	0	ID=cds-WP_135370026.1;Parent=gene-C9F05_RS03375;Dbxref=GenBank:WP_135370026.1;Name=WP_135370026.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462150.1;locus_tag=C9F05_RS03375;product=pirin family protein;protein_id=WP_135370026.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	8420	8584	.	+	.	ID=gene-C9F05_RS03380;Name=C9F05_RS03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03380;old_locus_tag=C9F05_03440
NZ_PYKE01000055.1	Protein Homology	CDS	8420	8584	.	+	0	ID=cds-WP_023253911.1;Parent=gene-C9F05_RS03380;Dbxref=GenBank:WP_023253911.1;Name=WP_023253911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462151.1;locus_tag=C9F05_RS03380;product=hypothetical protein;protein_id=WP_023253911.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	8697	10007	.	-	.	ID=gene-C9F05_RS03385;Name=C9F05_RS03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03385;old_locus_tag=C9F05_03445
NZ_PYKE01000055.1	Protein Homology	CDS	8697	10007	.	-	0	ID=cds-WP_135370027.1;Parent=gene-C9F05_RS03385;Dbxref=GenBank:WP_135370027.1;Name=WP_135370027.1;Ontology_term=GO:0051539,GO:0080146;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,L-cysteine desulfhydrase activity|0080146||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462152.1;locus_tag=C9F05_RS03385;product=L-cysteine desulfidase family protein;protein_id=WP_135370027.1;transl_table=11
NZ_PYKE01000055.1	RefSeq	gene	10033	11364	.	-	.	ID=gene-C9F05_RS03390;Name=C9F05_RS03390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03390;old_locus_tag=C9F05_03450
NZ_PYKE01000055.1	Protein Homology	CDS	10033	11364	.	-	0	ID=cds-WP_000443189.1;Parent=gene-C9F05_RS03390;Dbxref=GenBank:WP_000443189.1;Name=WP_000443189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462153.1;locus_tag=C9F05_RS03390;product=amino acid permease;protein_id=WP_000443189.1;transl_table=11
##sequence-region NZ_PYKE01000145.1 1 11280
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000145.1	RefSeq	region	1	11280	.	+	.	ID=NZ_PYKE01000145.1:1..11280;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000145.1	RefSeq	gene	107	988	.	-	.	ID=gene-C9F05_RS10490;Name=C9F05_RS10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10490;old_locus_tag=C9F05_10750
NZ_PYKE01000145.1	Protein Homology	CDS	107	988	.	-	0	ID=cds-WP_001082963.1;Parent=gene-C9F05_RS10490;Dbxref=GenBank:WP_001082963.1;Name=WP_001082963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462637.1;locus_tag=C9F05_RS10490;product=HARLDQ motif MBL-fold protein;protein_id=WP_001082963.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	1062	1964	.	+	.	ID=gene-C9F05_RS10495;Name=C9F05_RS10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10495;old_locus_tag=C9F05_10755
NZ_PYKE01000145.1	Protein Homology	CDS	1062	1964	.	+	0	ID=cds-WP_001050866.1;Parent=gene-C9F05_RS10495;Dbxref=GenBank:WP_001050866.1;Name=WP_001050866.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462636.1;locus_tag=C9F05_RS10495;product=LysR family transcriptional regulator;protein_id=WP_001050866.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	2014	2877	.	-	.	ID=gene-C9F05_RS10500;Name=C9F05_RS10500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10500;old_locus_tag=C9F05_10760
NZ_PYKE01000145.1	Protein Homology	CDS	2014	2877	.	-	0	ID=cds-WP_000621352.1;Parent=gene-C9F05_RS10500;Dbxref=GenBank:WP_000621352.1;Name=WP_000621352.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122606.1;locus_tag=C9F05_RS10500;product=YicC/YloC family endoribonuclease;protein_id=WP_000621352.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	3003	3719	.	+	.	ID=gene-C9F05_RS10505;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=C9F05_RS10505;old_locus_tag=C9F05_10770
NZ_PYKE01000145.1	Protein Homology	CDS	3003	3719	.	+	0	ID=cds-WP_001247078.1;Parent=gene-C9F05_RS10505;Dbxref=GenBank:WP_001247078.1;Name=WP_001247078.1;Ontology_term=GO:0008033,GO:0000049,GO:0009022;gbkey=CDS;gene=rph;go_function=tRNA binding|0000049||IEA,tRNA nucleotidyltransferase activity|0009022||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006803115.1;locus_tag=C9F05_RS10505;product=ribonuclease PH;protein_id=WP_001247078.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	3798	4439	.	+	.	ID=gene-C9F05_RS10510;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=C9F05_RS10510;old_locus_tag=C9F05_10775
NZ_PYKE01000145.1	Protein Homology	CDS	3798	4439	.	+	0	ID=cds-WP_000806167.1;Parent=gene-C9F05_RS10510;Dbxref=GenBank:WP_000806167.1;Name=WP_000806167.1;Ontology_term=GO:0009220,GO:0004588;gbkey=CDS;gene=pyrE;go_function=orotate phosphoribosyltransferase activity|0004588||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462633.1;locus_tag=C9F05_RS10510;product=orotate phosphoribosyltransferase;protein_id=WP_000806167.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	4517	5113	.	-	.	ID=gene-C9F05_RS10515;Name=slmA;gbkey=Gene;gene=slmA;gene_biotype=protein_coding;locus_tag=C9F05_RS10515;old_locus_tag=C9F05_10780
NZ_PYKE01000145.1	Protein Homology	CDS	4517	5113	.	-	0	ID=cds-WP_000818607.1;Parent=gene-C9F05_RS10515;Dbxref=GenBank:WP_000818607.1;Name=WP_000818607.1;Ontology_term=GO:0010974,GO:0003677;gbkey=CDS;gene=slmA;go_function=DNA binding|0003677||IEA;go_process=negative regulation of division septum assembly|0010974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000818604.1;locus_tag=C9F05_RS10515;product=nucleoid occlusion factor SlmA;protein_id=WP_000818607.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	5221	5679	.	-	.	ID=gene-C9F05_RS10520;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=C9F05_RS10520;old_locus_tag=C9F05_10785
NZ_PYKE01000145.1	Protein Homology	CDS	5221	5679	.	-	0	ID=cds-WP_000976078.1;Parent=gene-C9F05_RS10520;Dbxref=GenBank:WP_000976078.1;Name=WP_000976078.1;Ontology_term=GO:0006226,GO:0046081,GO:0000287,GO:0004170;gbkey=CDS;gene=dut;go_function=magnesium ion binding|0000287||IEA,dUTP diphosphatase activity|0004170||IEA;go_process=dUMP biosynthetic process|0006226||IEA,dUTP catabolic process|0046081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000976070.1;locus_tag=C9F05_RS10520;product=dUTP diphosphatase;protein_id=WP_000976078.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	5657	6877	.	-	.	ID=gene-C9F05_RS10525;Name=coaBC;gbkey=Gene;gene=coaBC;gene_biotype=protein_coding;locus_tag=C9F05_RS10525;old_locus_tag=C9F05_10790
NZ_PYKE01000145.1	Protein Homology	CDS	5657	6877	.	-	0	ID=cds-WP_000050176.1;Parent=gene-C9F05_RS10525;Dbxref=GenBank:WP_000050176.1;Name=WP_000050176.1;Ontology_term=GO:0015937,GO:0015941,GO:0004632,GO:0004633,GO:0010181;gbkey=CDS;gene=coaBC;go_function=phosphopantothenate--cysteine ligase activity|0004632||IEA,phosphopantothenoylcysteine decarboxylase activity|0004633||IEA,FMN binding|0010181||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA,pantothenate catabolic process|0015941||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418096.4;locus_tag=C9F05_RS10525;product=bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC;protein_id=WP_000050176.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	7053	7718	.	+	.	ID=gene-C9F05_RS10530;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=C9F05_RS10530;old_locus_tag=C9F05_10795
NZ_PYKE01000145.1	Protein Homology	CDS	7053	7718	.	+	0	ID=cds-WP_000380129.1;Parent=gene-C9F05_RS10530;Dbxref=GenBank:WP_000380129.1;Name=WP_000380129.1;gbkey=CDS;gene=radC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462629.1;locus_tag=C9F05_RS10530;product=RadC family protein;protein_id=WP_000380129.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	7936	8172	.	+	.	ID=gene-C9F05_RS10535;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=C9F05_RS10535;old_locus_tag=C9F05_10800
NZ_PYKE01000145.1	Protein Homology	CDS	7936	8172	.	+	0	ID=cds-WP_001519051.1;Parent=gene-C9F05_RS10535;Dbxref=GenBank:WP_001519051.1;Name=WP_001519051.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmB;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008457442.1;locus_tag=C9F05_RS10535;product=50S ribosomal protein L28;protein_id=WP_001519051.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	8193	8360	.	+	.	ID=gene-C9F05_RS10540;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=C9F05_RS10540;old_locus_tag=C9F05_10805
NZ_PYKE01000145.1	Protein Homology	CDS	8193	8360	.	+	0	ID=cds-WP_001051798.1;Parent=gene-C9F05_RS10540;Dbxref=GenBank:WP_001051798.1;Name=WP_001051798.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmG;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010847629.1;locus_tag=C9F05_RS10540;product=50S ribosomal protein L33;protein_id=WP_001051798.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	8458	9267	.	+	.	ID=gene-C9F05_RS10545;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=C9F05_RS10545;old_locus_tag=C9F05_10810
NZ_PYKE01000145.1	Protein Homology	CDS	8458	9267	.	+	0	ID=cds-WP_001114508.1;Parent=gene-C9F05_RS10545;Dbxref=GenBank:WP_001114508.1;Name=WP_001114508.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462626.1;locus_tag=C9F05_RS10545;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_001114508.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	9295	9774	.	-	.	ID=gene-C9F05_RS10550;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=C9F05_RS10550;old_locus_tag=C9F05_10815
NZ_PYKE01000145.1	Protein Homology	CDS	9295	9774	.	-	0	ID=cds-WP_001171884.1;Parent=gene-C9F05_RS10550;Dbxref=GenBank:WP_001171884.1;Name=WP_001171884.1;Ontology_term=GO:0015937,GO:0004595;gbkey=CDS;gene=coaD;go_function=pantetheine-phosphate adenylyltransferase activity|0004595||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462625.1;locus_tag=C9F05_RS10550;product=pantetheine-phosphate adenylyltransferase;protein_id=WP_001171884.1;transl_table=11
NZ_PYKE01000145.1	RefSeq	gene	9783	11060	.	-	.	ID=gene-C9F05_RS10555;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=C9F05_RS10555;old_locus_tag=C9F05_10820
NZ_PYKE01000145.1	Protein Homology	CDS	9783	11060	.	-	0	ID=cds-WP_000891580.1;Parent=gene-C9F05_RS10555;Dbxref=GenBank:WP_000891580.1;Name=WP_000891580.1;Ontology_term=GO:0016740;gbkey=CDS;gene=waaA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462624.1;locus_tag=C9F05_RS10555;product=lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_000891580.1;transl_table=11
##sequence-region NZ_PYKE01000088.1 1 47684
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000088.1	RefSeq	region	1	47684	.	+	.	ID=NZ_PYKE01000088.1:1..47684;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000088.1	RefSeq	pseudogene	272	343	.	+	.	ID=gene-C9F05_RS24100;Name=C9F05_RS24100;end_range=343,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24100;partial=true;pseudo=true
NZ_PYKE01000088.1	Protein Homology	CDS	272	343	.	+	0	ID=cds-C9F05_RS24100;Parent=gene-C9F05_RS24100;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=343,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001135374.1;locus_tag=C9F05_RS24100;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	692	1810	.	+	.	ID=gene-C9F05_RS06000;Name=hyaA;gbkey=Gene;gene=hyaA;gene_biotype=protein_coding;locus_tag=C9F05_RS06000;old_locus_tag=C9F05_06115
NZ_PYKE01000088.1	Protein Homology	CDS	692	1810	.	+	0	ID=cds-WP_001058312.1;Parent=gene-C9F05_RS06000;Dbxref=GenBank:WP_001058312.1;Name=WP_001058312.1;gbkey=CDS;gene=hyaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460742.1;locus_tag=C9F05_RS06000;product=hydrogenase 1 small subunit;protein_id=WP_001058312.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	1807	3600	.	+	.	ID=gene-C9F05_RS06005;Name=hyaB;gbkey=Gene;gene=hyaB;gene_biotype=protein_coding;locus_tag=C9F05_RS06005;old_locus_tag=C9F05_06120
NZ_PYKE01000088.1	Protein Homology	CDS	1807	3600	.	+	0	ID=cds-WP_000070982.1;Parent=gene-C9F05_RS06005;Dbxref=GenBank:WP_000070982.1;Name=WP_000070982.1;gbkey=CDS;gene=hyaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460743.1;locus_tag=C9F05_RS06005;product=Ni/Fe-hydrogenase large subunit;protein_id=WP_000070982.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	3619	4350	.	+	.	ID=gene-C9F05_RS06010;Name=hyaC;gbkey=Gene;gene=hyaC;gene_biotype=protein_coding;locus_tag=C9F05_RS06010;old_locus_tag=C9F05_06125
NZ_PYKE01000088.1	Protein Homology	CDS	3619	4350	.	+	0	ID=cds-WP_000147036.1;Parent=gene-C9F05_RS06010;Dbxref=GenBank:WP_000147036.1;Name=WP_000147036.1;gbkey=CDS;gene=hyaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460744.1;locus_tag=C9F05_RS06010;product=Ni/Fe-hydrogenase b-type cytochrome subunit;protein_id=WP_000147036.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	4347	4943	.	+	.	ID=gene-C9F05_RS06015;Name=hyaD;gbkey=Gene;gene=hyaD;gene_biotype=protein_coding;locus_tag=C9F05_RS06015;old_locus_tag=C9F05_06130
NZ_PYKE01000088.1	Protein Homology	CDS	4347	4943	.	+	0	ID=cds-WP_000993799.1;Parent=gene-C9F05_RS06015;Dbxref=GenBank:WP_000993799.1;Name=WP_000993799.1;gbkey=CDS;gene=hyaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460745.1;locus_tag=C9F05_RS06015;product=hydrogenase 1 maturation protease;protein_id=WP_000993799.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	4933	5337	.	+	.	ID=gene-C9F05_RS06020;Name=hyaE;gbkey=Gene;gene=hyaE;gene_biotype=protein_coding;locus_tag=C9F05_RS06020;old_locus_tag=C9F05_06135
NZ_PYKE01000088.1	Protein Homology	CDS	4933	5337	.	+	0	ID=cds-WP_023238495.1;Parent=gene-C9F05_RS06020;Dbxref=GenBank:WP_023238495.1;Name=WP_023238495.1;gbkey=CDS;gene=hyaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460746.1;locus_tag=C9F05_RS06020;product=hydrogenase-1 operon protein HyaE;protein_id=WP_023238495.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	5334	6182	.	+	.	ID=gene-C9F05_RS06025;Name=C9F05_RS06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06025;old_locus_tag=C9F05_06140
NZ_PYKE01000088.1	Protein Homology	CDS	5334	6182	.	+	0	ID=cds-WP_000063377.1;Parent=gene-C9F05_RS06025;Dbxref=GenBank:WP_000063377.1;Name=WP_000063377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460747.1;locus_tag=C9F05_RS06025;product=hydrogenase expression/formation protein;protein_id=WP_000063377.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	6257	7801	.	+	.	ID=gene-C9F05_RS06030;Name=appC;gbkey=Gene;gene=appC;gene_biotype=protein_coding;locus_tag=C9F05_RS06030;old_locus_tag=C9F05_06145
NZ_PYKE01000088.1	Protein Homology	CDS	6257	7801	.	+	0	ID=cds-WP_000263613.1;Parent=gene-C9F05_RS06030;Dbxref=GenBank:WP_000263613.1;Name=WP_000263613.1;gbkey=CDS;gene=appC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460748.1;locus_tag=C9F05_RS06030;product=cytochrome bd-II oxidase subunit 1;protein_id=WP_000263613.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	7813	8949	.	+	.	ID=gene-C9F05_RS06035;Name=appB;gbkey=Gene;gene=appB;gene_biotype=protein_coding;locus_tag=C9F05_RS06035;old_locus_tag=C9F05_06150
NZ_PYKE01000088.1	Protein Homology	CDS	7813	8949	.	+	0	ID=cds-WP_000888110.1;Parent=gene-C9F05_RS06035;Dbxref=GenBank:WP_000888110.1;Name=WP_000888110.1;gbkey=CDS;gene=appB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460749.1;locus_tag=C9F05_RS06035;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_000888110.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	8962	9051	.	+	.	ID=gene-C9F05_RS06040;Name=cbdX;gbkey=Gene;gene=cbdX;gene_biotype=protein_coding;locus_tag=C9F05_RS06040;old_locus_tag=C9F05_06155
NZ_PYKE01000088.1	Protein Homology	CDS	8962	9051	.	+	0	ID=cds-WP_000270301.1;Parent=gene-C9F05_RS06040;Dbxref=GenBank:WP_000270301.1;Name=WP_000270301.1;gbkey=CDS;gene=cbdX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460750.1;locus_tag=C9F05_RS06040;product=cytochrome bd-II oxidase subunit CbdX;protein_id=WP_000270301.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	9446	10720	.	+	.	ID=gene-C9F05_RS06045;Name=C9F05_RS06045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06045;old_locus_tag=C9F05_06160
NZ_PYKE01000088.1	Protein Homology	CDS	9446	10720	.	+	0	ID=cds-WP_001526439.1;Parent=gene-C9F05_RS06045;Dbxref=GenBank:WP_001526439.1;Name=WP_001526439.1;Ontology_term=GO:0006520,GO:0000166,GO:0016639;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor|0016639||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122303.1;locus_tag=C9F05_RS06045;product=Glu/Leu/Phe/Val family dehydrogenase;protein_id=WP_001526439.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	10934	12646	.	+	.	ID=gene-C9F05_RS06050;Name=C9F05_RS06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06050;old_locus_tag=C9F05_06165
NZ_PYKE01000088.1	Protein Homology	CDS	10934	12646	.	+	0	ID=cds-WP_135370115.1;Parent=gene-C9F05_RS06050;Dbxref=GenBank:WP_135370115.1;Name=WP_135370115.1;Ontology_term=GO:0005993,GO:0004555;gbkey=CDS;go_function=alpha%2Calpha-trehalase activity|0004555||IEA;go_process=trehalose catabolic process|0005993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460752.1;locus_tag=C9F05_RS06050;product=alpha%2Calpha-trehalase;protein_id=WP_135370115.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	12709	12963	.	-	.	ID=gene-C9F05_RS06055;Name=C9F05_RS06055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06055;old_locus_tag=C9F05_06170
NZ_PYKE01000088.1	Protein Homology	CDS	12709	12963	.	-	0	ID=cds-WP_000511320.1;Parent=gene-C9F05_RS06055;Dbxref=GenBank:WP_000511320.1;Name=WP_000511320.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460753.1;locus_tag=C9F05_RS06055;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000511320.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	13132	13866	.	+	.	ID=gene-C9F05_RS06060;Name=ycgR;gbkey=Gene;gene=ycgR;gene_biotype=protein_coding;locus_tag=C9F05_RS06060;old_locus_tag=C9F05_06175
NZ_PYKE01000088.1	Protein Homology	CDS	13132	13866	.	+	0	ID=cds-WP_080154496.1;Parent=gene-C9F05_RS06060;Dbxref=GenBank:WP_080154496.1;Name=WP_080154496.1;Ontology_term=GO:0071945,GO:0035438;gbkey=CDS;gene=ycgR;go_function=cyclic-di-GMP binding|0035438||IEA;go_process=regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed|0071945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460754.1;locus_tag=C9F05_RS06060;product=flagellar brake protein YcgR;protein_id=WP_080154496.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	13880	14491	.	-	.	ID=gene-C9F05_RS06065;Name=emtA;gbkey=Gene;gene=emtA;gene_biotype=protein_coding;locus_tag=C9F05_RS06065;old_locus_tag=C9F05_06180
NZ_PYKE01000088.1	Protein Homology	CDS	13880	14491	.	-	0	ID=cds-WP_000776974.1;Parent=gene-C9F05_RS06065;Dbxref=GenBank:WP_000776974.1;Name=WP_000776974.1;gbkey=CDS;gene=emtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460755.1;locus_tag=C9F05_RS06065;product=membrane-bound lytic murein transglycosylase EmtA;protein_id=WP_000776974.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	14662	15576	.	+	.	ID=gene-C9F05_RS06070;Name=ldcA;gbkey=Gene;gene=ldcA;gene_biotype=protein_coding;locus_tag=C9F05_RS06070;old_locus_tag=C9F05_06185
NZ_PYKE01000088.1	Protein Homology	CDS	14662	15576	.	+	0	ID=cds-WP_135370107.1;Parent=gene-C9F05_RS06070;Dbxref=GenBank:WP_135370107.1;Name=WP_135370107.1;gbkey=CDS;gene=ldcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460756.1;locus_tag=C9F05_RS06070;product=muramoyltetrapeptide carboxypeptidase;protein_id=WP_135370107.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	pseudogene	15673	17388	.	+	.	ID=gene-C9F05_RS06075;Name=C9F05_RS06075;end_range=17388,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS06075;old_locus_tag=C9F05_06190;partial=true;pseudo=true
NZ_PYKE01000088.1	Protein Homology	CDS	15673	17388	.	+	0	ID=cds-C9F05_RS06075;Parent=gene-C9F05_RS06075;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006813,GO:0006884,GO:0055085,GO:0051139,GO:0016020;end_range=17388,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metal cation:proton antiporter activity|0051139||IEA;go_process=potassium ion transport|0006813||IEA,cell volume homeostasis|0006884||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF003714.0;locus_tag=C9F05_RS06075;partial=true;product=potassium/proton antiporter;pseudo=true;transl_table=11
NZ_PYKE01000088.1	RefSeq	pseudogene	17344	17436	.	-	.	ID=gene-C9F05_RS24105;Name=C9F05_RS24105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24105;partial=true;pseudo=true;start_range=.,17344
NZ_PYKE01000088.1	Protein Homology	CDS	17344	17436	.	-	0	ID=cds-C9F05_RS24105;Parent=gene-C9F05_RS24105;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049075.1;locus_tag=C9F05_RS24105;partial=true;product=hypothetical protein;pseudo=true;start_range=.,17344;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	17469	18539	.	-	.	ID=gene-C9F05_RS06080;Name=dadX;gbkey=Gene;gene=dadX;gene_biotype=protein_coding;locus_tag=C9F05_RS06080;old_locus_tag=C9F05_06195
NZ_PYKE01000088.1	Protein Homology	CDS	17469	18539	.	-	0	ID=cds-WP_135370108.1;Parent=gene-C9F05_RS06080;Dbxref=GenBank:WP_135370108.1;Name=WP_135370108.1;Ontology_term=GO:0006522,GO:0008784;gbkey=CDS;gene=dadX;go_function=alanine racemase activity|0008784||IEA;go_process=alanine metabolic process|0006522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460758.1;locus_tag=C9F05_RS06080;product=catabolic alanine racemase DadX;protein_id=WP_135370108.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	18553	19851	.	-	.	ID=gene-C9F05_RS06085;Name=C9F05_RS06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06085;old_locus_tag=C9F05_06200
NZ_PYKE01000088.1	Protein Homology	CDS	18553	19851	.	-	0	ID=cds-WP_001266937.1;Parent=gene-C9F05_RS06085;Dbxref=GenBank:WP_001266937.1;Name=WP_001266937.1;Ontology_term=GO:0055130,GO:0008718,GO:0016491,GO:0071949;gbkey=CDS;go_function=D-amino-acid dehydrogenase activity|0008718||IEA,oxidoreductase activity|0016491||IEA,FAD binding|0071949||IEA;go_process=D-alanine catabolic process|0055130||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460759.1;locus_tag=C9F05_RS06085;product=D-amino acid dehydrogenase;protein_id=WP_001266937.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	20174	21706	.	+	.	ID=gene-C9F05_RS06090;Name=C9F05_RS06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06090;old_locus_tag=C9F05_06205
NZ_PYKE01000088.1	Protein Homology	CDS	20174	21706	.	+	0	ID=cds-WP_050067660.1;Parent=gene-C9F05_RS06090;Dbxref=GenBank:WP_050067660.1;Name=WP_050067660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460760.3;locus_tag=C9F05_RS06090;product=SpoVR family protein;protein_id=WP_050067660.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	21753	22472	.	-	.	ID=gene-C9F05_RS06095;Name=fadR;gbkey=Gene;gene=fadR;gene_biotype=protein_coding;locus_tag=C9F05_RS06095;old_locus_tag=C9F05_06210
NZ_PYKE01000088.1	Protein Homology	CDS	21753	22472	.	-	0	ID=cds-WP_000234826.1;Parent=gene-C9F05_RS06095;Dbxref=GenBank:WP_000234826.1;Name=WP_000234826.1;Ontology_term=GO:0006355,GO:0019217,GO:0000062,GO:0003677,GO:0003700;gbkey=CDS;gene=fadR;go_function=fatty-acyl-CoA binding|0000062||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,regulation of fatty acid metabolic process|0019217||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460761.1;locus_tag=C9F05_RS06095;product=fatty acid metabolism transcriptional regulator FadR;protein_id=WP_000234826.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	22692	24236	.	+	.	ID=gene-C9F05_RS06100;Name=nhaB;gbkey=Gene;gene=nhaB;gene_biotype=protein_coding;locus_tag=C9F05_RS06100;old_locus_tag=C9F05_06215
NZ_PYKE01000088.1	Protein Homology	CDS	22692	24236	.	+	0	ID=cds-WP_000406446.1;Parent=gene-C9F05_RS06100;Dbxref=GenBank:WP_000406446.1;Name=WP_000406446.1;Ontology_term=GO:0006814,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaB;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460762.1;locus_tag=C9F05_RS06100;product=Na(+)/H(+) antiporter NhaB;protein_id=WP_000406446.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	24378	24908	.	+	.	ID=gene-C9F05_RS06105;Name=dsbB;gbkey=Gene;gene=dsbB;gene_biotype=protein_coding;locus_tag=C9F05_RS06105;old_locus_tag=C9F05_06220
NZ_PYKE01000088.1	Protein Homology	CDS	24378	24908	.	+	0	ID=cds-WP_000943475.1;Parent=gene-C9F05_RS06105;Dbxref=GenBank:WP_000943475.1;Name=WP_000943475.1;Ontology_term=GO:0006457,GO:0015035,GO:0016020;gbkey=CDS;gene=dsbB;go_component=membrane|0016020||IEA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460763.1;locus_tag=C9F05_RS06105;product=disulfide bond formation protein DsbB;protein_id=WP_000943475.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	25017	25358	.	+	.	ID=gene-C9F05_RS06110;Name=C9F05_RS06110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06110;old_locus_tag=C9F05_06225
NZ_PYKE01000088.1	Protein Homology	CDS	25017	25358	.	+	0	ID=cds-WP_000018967.1;Parent=gene-C9F05_RS06110;Dbxref=GenBank:WP_000018967.1;Name=WP_000018967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460764.1;locus_tag=C9F05_RS06110;product=DUF1971 domain-containing protein;protein_id=WP_000018967.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	25430	25603	.	-	.	ID=gene-C9F05_RS06115;Name=C9F05_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06115;old_locus_tag=C9F05_06230
NZ_PYKE01000088.1	Protein Homology	CDS	25430	25603	.	-	0	ID=cds-WP_135370109.1;Parent=gene-C9F05_RS06115;Dbxref=GenBank:WP_135370109.1;Name=WP_135370109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460765.1;locus_tag=C9F05_RS06115;product=GnsA/GnsB family addiction module toxin;protein_id=WP_135370109.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	25795	25932	.	-	.	ID=gene-C9F05_RS06120;Name=C9F05_RS06120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06120;old_locus_tag=C9F05_06235
NZ_PYKE01000088.1	Protein Homology	CDS	25795	25932	.	-	0	ID=cds-WP_001519337.1;Parent=gene-C9F05_RS06120;Dbxref=GenBank:WP_001519337.1;Name=WP_001519337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460766.1;locus_tag=C9F05_RS06120;product=hypothetical protein;protein_id=WP_001519337.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	26284	26730	.	-	.	ID=gene-C9F05_RS06125;Name=C9F05_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06125;old_locus_tag=C9F05_06240
NZ_PYKE01000088.1	Protein Homology	CDS	26284	26730	.	-	0	ID=cds-WP_001285703.1;Parent=gene-C9F05_RS06125;Dbxref=GenBank:WP_001285703.1;Name=WP_001285703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309703.5;locus_tag=C9F05_RS06125;product=YcgN family cysteine cluster protein;protein_id=WP_001285703.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	26823	27482	.	-	.	ID=gene-C9F05_RS06130;Name=C9F05_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06130;old_locus_tag=C9F05_06245
NZ_PYKE01000088.1	Protein Homology	CDS	26823	27482	.	-	0	ID=cds-WP_135370110.1;Parent=gene-C9F05_RS06130;Dbxref=GenBank:WP_135370110.1;Name=WP_135370110.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460768.1;locus_tag=C9F05_RS06130;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_135370110.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	27532	27825	.	-	.	ID=gene-C9F05_RS06135;Name=C9F05_RS06135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06135;old_locus_tag=C9F05_06250
NZ_PYKE01000088.1	Protein Homology	CDS	27532	27825	.	-	0	ID=cds-WP_001670513.1;Parent=gene-C9F05_RS06135;Dbxref=GenBank:WP_001670513.1;Name=WP_001670513.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309701.2;locus_tag=C9F05_RS06135;product=YcgL domain-containing protein;protein_id=WP_001670513.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	27951	28658	.	+	.	ID=gene-C9F05_RS06140;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=C9F05_RS06140;old_locus_tag=C9F05_06255
NZ_PYKE01000088.1	Protein Homology	CDS	27951	28658	.	+	0	ID=cds-WP_000072527.1;Parent=gene-C9F05_RS06140;Dbxref=GenBank:WP_000072527.1;Name=WP_000072527.1;Ontology_term=GO:0000918,GO:1901891,GO:0004857;gbkey=CDS;gene=minC;go_function=enzyme inhibitor activity|0004857||IEA;go_process=division septum site selection|0000918||IEA,regulation of cell septum assembly|1901891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460770.1;locus_tag=C9F05_RS06140;product=septum site-determining protein MinC;protein_id=WP_000072527.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	28682	29494	.	+	.	ID=gene-C9F05_RS06145;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=C9F05_RS06145;old_locus_tag=C9F05_06260
NZ_PYKE01000088.1	Protein Homology	CDS	28682	29494	.	+	0	ID=cds-WP_135370111.1;Parent=gene-C9F05_RS06145;Dbxref=GenBank:WP_135370111.1;Name=WP_135370111.1;gbkey=CDS;gene=minD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020801817.1;locus_tag=C9F05_RS06145;product=septum site-determining protein MinD;protein_id=WP_135370111.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	29498	29764	.	+	.	ID=gene-C9F05_RS06150;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=C9F05_RS06150;old_locus_tag=C9F05_06265
NZ_PYKE01000088.1	Protein Homology	CDS	29498	29764	.	+	0	ID=cds-WP_001185666.1;Parent=gene-C9F05_RS06150;Dbxref=GenBank:WP_001185666.1;Name=WP_001185666.1;Ontology_term=GO:0032955;gbkey=CDS;gene=minE;go_process=regulation of division septum assembly|0032955||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460772.1;locus_tag=C9F05_RS06150;product=cell division topological specificity factor MinE;protein_id=WP_001185666.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	29886	31013	.	-	.	ID=gene-C9F05_RS06155;Name=rnd;gbkey=Gene;gene=rnd;gene_biotype=protein_coding;locus_tag=C9F05_RS06155;old_locus_tag=C9F05_06270
NZ_PYKE01000088.1	Protein Homology	CDS	29886	31013	.	-	0	ID=cds-WP_001109135.1;Parent=gene-C9F05_RS06155;Dbxref=GenBank:WP_001109135.1;Name=WP_001109135.1;Ontology_term=GO:0008033,GO:0003676,GO:0008408,GO:0033890;gbkey=CDS;gene=rnd;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA,ribonuclease D activity|0033890||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416318.1;locus_tag=C9F05_RS06155;product=ribonuclease D;protein_id=WP_001109135.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	31086	32771	.	-	.	ID=gene-C9F05_RS06160;Name=fadD;gbkey=Gene;gene=fadD;gene_biotype=protein_coding;locus_tag=C9F05_RS06160;old_locus_tag=C9F05_06275
NZ_PYKE01000088.1	Protein Homology	CDS	31086	32771	.	-	0	ID=cds-WP_001532413.1;Parent=gene-C9F05_RS06160;Dbxref=GenBank:WP_001532413.1;Name=WP_001532413.1;gbkey=CDS;gene=fadD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460774.1;locus_tag=C9F05_RS06160;product=long-chain-fatty-acid--CoA ligase FadD;protein_id=WP_001532413.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	32976	33557	.	-	.	ID=gene-C9F05_RS06165;Name=C9F05_RS06165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06165;old_locus_tag=C9F05_06285
NZ_PYKE01000088.1	Protein Homology	CDS	32976	33557	.	-	0	ID=cds-WP_135370112.1;Parent=gene-C9F05_RS06165;Dbxref=GenBank:WP_135370112.1;Name=WP_135370112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460775.1;locus_tag=C9F05_RS06165;product=Slp family lipoprotein;protein_id=WP_135370112.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	33629	34324	.	-	.	ID=gene-C9F05_RS06170;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=C9F05_RS06170;old_locus_tag=C9F05_06290
NZ_PYKE01000088.1	Protein Homology	CDS	33629	34324	.	-	0	ID=cds-WP_001221014.1;Parent=gene-C9F05_RS06170;Dbxref=GenBank:WP_001221014.1;Name=WP_001221014.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaB;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460776.1;locus_tag=C9F05_RS06170;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=WP_001221014.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	34382	36292	.	-	.	ID=gene-C9F05_RS06175;Name=C9F05_RS06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06175;old_locus_tag=C9F05_06295
NZ_PYKE01000088.1	Protein Homology	CDS	34382	36292	.	-	0	ID=cds-WP_000128807.1;Parent=gene-C9F05_RS06175;Dbxref=GenBank:WP_000128807.1;Name=WP_000128807.1;Ontology_term=GO:0003676,GO:0003677,GO:0004386,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460777.1;locus_tag=C9F05_RS06175;product=ATP-dependent DNA helicase;protein_id=WP_000128807.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	36423	36767	.	+	.	ID=gene-C9F05_RS06180;Name=C9F05_RS06180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06180;old_locus_tag=C9F05_06300
NZ_PYKE01000088.1	Protein Homology	CDS	36423	36767	.	+	0	ID=cds-WP_135370113.1;Parent=gene-C9F05_RS06180;Dbxref=GenBank:WP_135370113.1;Name=WP_135370113.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460778.1;locus_tag=C9F05_RS06180;product=RidA family protein;protein_id=WP_135370113.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	36773	36952	.	-	.	ID=gene-C9F05_RS06185;Name=C9F05_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06185;old_locus_tag=C9F05_06305
NZ_PYKE01000088.1	Protein Homology	CDS	36773	36952	.	-	0	ID=cds-WP_000457328.1;Parent=gene-C9F05_RS06185;Dbxref=GenBank:WP_000457328.1;Name=WP_000457328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460779.1;locus_tag=C9F05_RS06185;product=YoaH family protein;protein_id=WP_000457328.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	37033	38397	.	+	.	ID=gene-C9F05_RS06190;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=C9F05_RS06190;old_locus_tag=C9F05_06310
NZ_PYKE01000088.1	Protein Homology	CDS	37033	38397	.	+	0	ID=cds-WP_135370114.1;Parent=gene-C9F05_RS06190;Dbxref=GenBank:WP_135370114.1;Name=WP_135370114.1;Ontology_term=GO:0009396;gbkey=CDS;gene=pabB;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460780.1;locus_tag=C9F05_RS06190;product=aminodeoxychorismate synthase component 1;protein_id=WP_135370114.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	38401	38979	.	+	.	ID=gene-C9F05_RS06195;Name=C9F05_RS06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06195;old_locus_tag=C9F05_06315
NZ_PYKE01000088.1	Protein Homology	CDS	38401	38979	.	+	0	ID=cds-WP_000381544.1;Parent=gene-C9F05_RS06195;Dbxref=GenBank:WP_000381544.1;Name=WP_000381544.1;Ontology_term=GO:0000287,GO:0010945;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,coenzyme A diphosphatase activity|0010945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460781.1;locus_tag=C9F05_RS06195;product=CoA pyrophosphatase;protein_id=WP_000381544.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	39241	40605	.	+	.	ID=gene-C9F05_RS06200;Name=sdaA;gbkey=Gene;gene=sdaA;gene_biotype=protein_coding;locus_tag=C9F05_RS06200;old_locus_tag=C9F05_06320
NZ_PYKE01000088.1	Protein Homology	CDS	39241	40605	.	+	0	ID=cds-WP_000624274.1;Parent=gene-C9F05_RS06200;Dbxref=GenBank:WP_000624274.1;Name=WP_000624274.1;gbkey=CDS;gene=sdaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460782.1;locus_tag=C9F05_RS06200;product=L-serine ammonia-lyase;protein_id=WP_000624274.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	40743	42344	.	+	.	ID=gene-C9F05_RS06205;Name=C9F05_RS06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06205;old_locus_tag=C9F05_06325
NZ_PYKE01000088.1	Protein Homology	CDS	40743	42344	.	+	0	ID=cds-WP_023238502.1;Parent=gene-C9F05_RS06205;Dbxref=GenBank:WP_023238502.1;Name=WP_023238502.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001192512.1;locus_tag=C9F05_RS06205;product=EAL domain-containing protein;protein_id=WP_023238502.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	42366	43925	.	-	.	ID=gene-C9F05_RS06210;Name=yoaE;gbkey=Gene;gene=yoaE;gene_biotype=protein_coding;locus_tag=C9F05_RS06210;old_locus_tag=C9F05_06330
NZ_PYKE01000088.1	Protein Homology	CDS	42366	43925	.	-	0	ID=cds-WP_000421815.1;Parent=gene-C9F05_RS06210;Dbxref=GenBank:WP_000421815.1;Name=WP_000421815.1;gbkey=CDS;gene=yoaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460784.2;locus_tag=C9F05_RS06210;product=CNNM family cation transport protein YoaE;protein_id=WP_000421815.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	43913	44245	.	-	.	ID=gene-C9F05_RS24110;Name=C9F05_RS24110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24110;old_locus_tag=C9F05_06335
NZ_PYKE01000088.1	Protein Homology	CDS	43913	44245	.	-	0	ID=cds-WP_011233029.1;Parent=gene-C9F05_RS24110;Dbxref=GenBank:WP_011233029.1;Name=WP_011233029.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF046943.2;locus_tag=C9F05_RS24110;product=protein YoaL;protein_id=WP_011233029.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	44398	45366	.	+	.	ID=gene-C9F05_RS06215;Name=manX;gbkey=Gene;gene=manX;gene_biotype=protein_coding;locus_tag=C9F05_RS06215;old_locus_tag=C9F05_06340
NZ_PYKE01000088.1	Protein Homology	CDS	44398	45366	.	+	0	ID=cds-WP_000150521.1;Parent=gene-C9F05_RS06215;Dbxref=GenBank:WP_000150521.1;Name=WP_000150521.1;Ontology_term=GO:0009401,GO:0008982;gbkey=CDS;gene=manX;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460786.1;locus_tag=C9F05_RS06215;product=PTS mannose transporter subunit IIAB;protein_id=WP_000150521.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	45419	46219	.	+	.	ID=gene-C9F05_RS06220;Name=manY;gbkey=Gene;gene=manY;gene_biotype=protein_coding;locus_tag=C9F05_RS06220;old_locus_tag=C9F05_06345
NZ_PYKE01000088.1	Protein Homology	CDS	45419	46219	.	+	0	ID=cds-WP_000406918.1;Parent=gene-C9F05_RS06220;Dbxref=GenBank:WP_000406918.1;Name=WP_000406918.1;gbkey=CDS;gene=manY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910918.1;locus_tag=C9F05_RS06220;product=PTS mannose transporter subunit IIC;protein_id=WP_000406918.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	46232	47083	.	+	.	ID=gene-C9F05_RS06225;Name=C9F05_RS06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06225;old_locus_tag=C9F05_06350
NZ_PYKE01000088.1	Protein Homology	CDS	46232	47083	.	+	0	ID=cds-WP_001518647.1;Parent=gene-C9F05_RS06225;Dbxref=GenBank:WP_001518647.1;Name=WP_001518647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000228151.1;locus_tag=C9F05_RS06225;product=PTS mannose transporter subunit IID;protein_id=WP_001518647.1;transl_table=11
NZ_PYKE01000088.1	RefSeq	gene	47142	47600	.	+	.	ID=gene-C9F05_RS06230;Name=C9F05_RS06230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06230;old_locus_tag=C9F05_06355
NZ_PYKE01000088.1	Protein Homology	CDS	47142	47600	.	+	0	ID=cds-WP_000156280.1;Parent=gene-C9F05_RS06230;Dbxref=GenBank:WP_000156280.1;Name=WP_000156280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416334.1;locus_tag=C9F05_RS06230;product=DUF986 family protein;protein_id=WP_000156280.1;transl_table=11
##sequence-region NZ_PYKE01000202.1 1 11197
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000202.1	RefSeq	region	1	11197	.	+	.	ID=NZ_PYKE01000202.1:1..11197;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000202.1	RefSeq	gene	399	623	.	-	.	ID=gene-C9F05_RS24045;Name=C9F05_RS24045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24045
NZ_PYKE01000202.1	Protein Homology	CDS	399	623	.	-	0	ID=cds-WP_135370354.1;Parent=gene-C9F05_RS24045;Dbxref=GenBank:WP_135370354.1;Name=WP_135370354.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026627.6;locus_tag=C9F05_RS24045;product=PagK family vesicle-borne virulence factor;protein_id=WP_135370354.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	pseudogene	659	980	.	+	.	ID=gene-C9F05_RS23855;Name=C9F05_RS23855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23855;pseudo=true
NZ_PYKE01000202.1	Protein Homology	CDS	659	980	.	+	0	ID=cds-C9F05_RS23855;Parent=gene-C9F05_RS23855;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460062.1;locus_tag=C9F05_RS23855;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	990	1331	.	-	.	ID=gene-C9F05_RS13285;Name=sigE;gbkey=Gene;gene=sigE;gene_biotype=protein_coding;locus_tag=C9F05_RS13285;old_locus_tag=C9F05_13660
NZ_PYKE01000202.1	Protein Homology	CDS	990	1331	.	-	0	ID=cds-WP_047607139.1;Parent=gene-C9F05_RS13285;Dbxref=GenBank:WP_047607139.1;Name=WP_047607139.1;gbkey=CDS;gene=sigE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460063.1;locus_tag=C9F05_RS13285;product=type III secretion system chaperone SigE;protein_id=WP_047607139.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	1348	3033	.	-	.	ID=gene-C9F05_RS13290;Name=sopB;gbkey=Gene;gene=sopB;gene_biotype=protein_coding;locus_tag=C9F05_RS13290;old_locus_tag=C9F05_13665
NZ_PYKE01000202.1	Protein Homology	CDS	1348	3033	.	-	0	ID=cds-WP_135370355.1;Parent=gene-C9F05_RS13290;Dbxref=GenBank:WP_135370355.1;Name=WP_135370355.1;gbkey=CDS;gene=sopB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460064.1;locus_tag=C9F05_RS13290;product=SPI-1 type III secretion system effector inositol phosphate phosphatase SopB;protein_id=WP_135370355.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	3367	3537	.	+	.	ID=gene-C9F05_RS13295;Name=C9F05_RS13295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13295;old_locus_tag=C9F05_13670
NZ_PYKE01000202.1	Protein Homology	CDS	3367	3537	.	+	0	ID=cds-WP_001111006.1;Parent=gene-C9F05_RS13295;Dbxref=GenBank:WP_001111006.1;Name=WP_001111006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460065.1;locus_tag=C9F05_RS13295;product=YlcI/YnfO family protein;protein_id=WP_001111006.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	3538	3648	.	-	.	ID=gene-C9F05_RS13300;Name=C9F05_RS13300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13300;old_locus_tag=C9F05_13675
NZ_PYKE01000202.1	Protein Homology	CDS	3538	3648	.	-	0	ID=cds-WP_000174813.1;Parent=gene-C9F05_RS13300;Dbxref=GenBank:WP_000174813.1;Name=WP_000174813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447525.1;locus_tag=C9F05_RS13300;product=hypothetical protein;protein_id=WP_000174813.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	3757	5226	.	-	.	ID=gene-C9F05_RS13305;Name=C9F05_RS13305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13305;old_locus_tag=C9F05_13680
NZ_PYKE01000202.1	Protein Homology	CDS	3757	5226	.	-	0	ID=cds-WP_000760235.1;Parent=gene-C9F05_RS13305;Dbxref=GenBank:WP_000760235.1;Name=WP_000760235.1;Ontology_term=GO:0006508,GO:0016805;gbkey=CDS;go_function=dipeptidase activity|0016805||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460067.1;locus_tag=C9F05_RS13305;product=C69 family dipeptidase;protein_id=WP_000760235.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	5399	6763	.	-	.	ID=gene-C9F05_RS13310;Name=C9F05_RS13310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13310;old_locus_tag=C9F05_13685
NZ_PYKE01000202.1	Protein Homology	CDS	5399	6763	.	-	0	ID=cds-WP_000240026.1;Parent=gene-C9F05_RS13310;Dbxref=GenBank:WP_000240026.1;Name=WP_000240026.1;Ontology_term=GO:0000160,GO:0016310,GO:0000155,GO:0004673,GO:0016772,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447527.1;locus_tag=C9F05_RS13310;product=heavy metal sensor histidine kinase;protein_id=WP_000240026.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	6756	7436	.	-	.	ID=gene-C9F05_RS13315;Name=hprR;gbkey=Gene;gene=hprR;gene_biotype=protein_coding;locus_tag=C9F05_RS13315;old_locus_tag=C9F05_13690
NZ_PYKE01000202.1	Protein Homology	CDS	6756	7436	.	-	0	ID=cds-WP_023258270.1;Parent=gene-C9F05_RS13315;Dbxref=GenBank:WP_023258270.1;Name=WP_023258270.1;gbkey=CDS;gene=hprR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000698203.1;locus_tag=C9F05_RS13315;product=response regulator transcription factor HprR;protein_id=WP_023258270.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	7572	7982	.	+	.	ID=gene-C9F05_RS13320;Name=hiuH;gbkey=Gene;gene=hiuH;gene_biotype=protein_coding;locus_tag=C9F05_RS13320;old_locus_tag=C9F05_13695
NZ_PYKE01000202.1	Protein Homology	CDS	7572	7982	.	+	0	ID=cds-WP_000833182.1;Parent=gene-C9F05_RS13320;Dbxref=GenBank:WP_000833182.1;Name=WP_000833182.1;gbkey=CDS;gene=hiuH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460070.1;locus_tag=C9F05_RS13320;product=hydroxyisourate hydrolase;protein_id=WP_000833182.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	8315	8827	.	-	.	ID=gene-C9F05_RS13325;Name=C9F05_RS13325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13325;old_locus_tag=C9F05_13710
NZ_PYKE01000202.1	Protein Homology	CDS	8315	8827	.	-	0	ID=cds-WP_001195556.1;Parent=gene-C9F05_RS13325;Dbxref=GenBank:WP_001195556.1;Name=WP_001195556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460071.1;locus_tag=C9F05_RS13325;product=4-hydroxyphenylacetate 3-monooxygenase reductase subunit;protein_id=WP_001195556.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	8845	10407	.	-	.	ID=gene-C9F05_RS13330;Name=hpaB;gbkey=Gene;gene=hpaB;gene_biotype=protein_coding;locus_tag=C9F05_RS13330;old_locus_tag=C9F05_13715
NZ_PYKE01000202.1	Protein Homology	CDS	8845	10407	.	-	0	ID=cds-WP_000801496.1;Parent=gene-C9F05_RS13330;Dbxref=GenBank:WP_000801496.1;Name=WP_000801496.1;Ontology_term=GO:0010124,GO:0016712,GO:0050660;gbkey=CDS;gene=hpaB;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C reduced flavin or flavoprotein as one donor%2C and incorporation of one atom of oxygen|0016712||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000801462.1;locus_tag=C9F05_RS13330;product=4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component;protein_id=WP_000801496.1;transl_table=11
NZ_PYKE01000202.1	RefSeq	gene	10625	11065	.	-	.	ID=gene-C9F05_RS13335;Name=hpaR;gbkey=Gene;gene=hpaR;gene_biotype=protein_coding;locus_tag=C9F05_RS13335;old_locus_tag=C9F05_13720
NZ_PYKE01000202.1	Protein Homology	CDS	10625	11065	.	-	0	ID=cds-WP_000543922.1;Parent=gene-C9F05_RS13335;Dbxref=GenBank:WP_000543922.1;Name=WP_000543922.1;Ontology_term=GO:0045892,GO:0003677,GO:0003700;gbkey=CDS;gene=hpaR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460073.1;locus_tag=C9F05_RS13335;product=homoprotocatechuate degradation operon regulator HpaR;protein_id=WP_000543922.1;transl_table=11
##sequence-region NZ_PYKE01000301.1 1 11105
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000301.1	RefSeq	region	1	11105	.	+	.	ID=NZ_PYKE01000301.1:1..11105;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000301.1	RefSeq	gene	60	782	.	+	.	ID=gene-C9F05_RS20545;Name=sdiA;gbkey=Gene;gene=sdiA;gene_biotype=protein_coding;locus_tag=C9F05_RS20545;old_locus_tag=C9F05_21110
NZ_PYKE01000301.1	Protein Homology	CDS	60	782	.	+	0	ID=cds-WP_001157172.1;Parent=gene-C9F05_RS20545;Dbxref=GenBank:WP_001157172.1;Name=WP_001157172.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=sdiA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460903.1;locus_tag=C9F05_RS20545;product=transcriptional regulator SdiA;protein_id=WP_001157172.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	849	1073	.	-	.	ID=gene-C9F05_RS20550;Name=C9F05_RS20550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20550;old_locus_tag=C9F05_21115
NZ_PYKE01000301.1	Protein Homology	CDS	849	1073	.	-	0	ID=cds-WP_000106483.1;Parent=gene-C9F05_RS20550;Dbxref=GenBank:WP_000106483.1;Name=WP_000106483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460902.1;locus_tag=C9F05_RS20550;product=DUF2594 family protein;protein_id=WP_000106483.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	1070	1225	.	-	.	ID=gene-C9F05_RS20555;Name=C9F05_RS20555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20555;old_locus_tag=C9F05_21120
NZ_PYKE01000301.1	Protein Homology	CDS	1070	1225	.	-	0	ID=cds-WP_000546186.1;Parent=gene-C9F05_RS20555;Dbxref=GenBank:WP_000546186.1;Name=WP_000546186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448360.1;locus_tag=C9F05_RS20555;product=hypothetical protein;protein_id=WP_000546186.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	1537	2193	.	+	.	ID=gene-C9F05_RS20560;Name=uvrY;gbkey=Gene;gene=uvrY;gene_biotype=protein_coding;locus_tag=C9F05_RS20560;old_locus_tag=C9F05_21125
NZ_PYKE01000301.1	Protein Homology	CDS	1537	2193	.	+	0	ID=cds-WP_000611323.1;Parent=gene-C9F05_RS20560;Dbxref=GenBank:WP_000611323.1;Name=WP_000611323.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=uvrY;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460900.1;locus_tag=C9F05_RS20560;product=UvrY/SirA/GacA family response regulator transcription factor;protein_id=WP_000611323.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	2190	4022	.	+	.	ID=gene-C9F05_RS20565;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=C9F05_RS20565;old_locus_tag=C9F05_21130
NZ_PYKE01000301.1	Protein Homology	CDS	2190	4022	.	+	0	ID=cds-WP_023254656.1;Parent=gene-C9F05_RS20565;Dbxref=GenBank:WP_023254656.1;Name=WP_023254656.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460899.1;locus_tag=C9F05_RS20565;product=excinuclease ABC subunit UvrC;protein_id=WP_023254656.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	4079	4627	.	+	.	ID=gene-C9F05_RS20570;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=C9F05_RS20570;old_locus_tag=C9F05_21135
NZ_PYKE01000301.1	Protein Homology	CDS	4079	4627	.	+	0	ID=cds-WP_001160192.1;Parent=gene-C9F05_RS20570;Dbxref=GenBank:WP_001160192.1;Name=WP_001160192.1;gbkey=CDS;gene=pgsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460898.1;locus_tag=C9F05_RS20570;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_001160192.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	4779	4854	.	+	.	ID=gene-C9F05_RS20575;Name=C9F05_RS20575;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS20575;old_locus_tag=C9F05_21140
NZ_PYKE01000301.1	tRNAscan-SE	tRNA	4779	4854	.	+	.	ID=rna-C9F05_RS20575;Parent=gene-C9F05_RS20575;anticodon=(pos:4812..4814);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS20575;product=tRNA-Gly
NZ_PYKE01000301.1	tRNAscan-SE	exon	4779	4854	.	+	.	ID=exon-C9F05_RS20575-1;Parent=rna-C9F05_RS20575;anticodon=(pos:4812..4814);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS20575;product=tRNA-Gly
NZ_PYKE01000301.1	RefSeq	gene	4906	4979	.	+	.	ID=gene-C9F05_RS20580;Name=C9F05_RS20580;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS20580;old_locus_tag=C9F05_21145
NZ_PYKE01000301.1	tRNAscan-SE	tRNA	4906	4979	.	+	.	ID=rna-C9F05_RS20580;Parent=gene-C9F05_RS20580;anticodon=(pos:4938..4940);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS20580;product=tRNA-Cys
NZ_PYKE01000301.1	tRNAscan-SE	exon	4906	4979	.	+	.	ID=exon-C9F05_RS20580-1;Parent=rna-C9F05_RS20580;anticodon=(pos:4938..4940);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS20580;product=tRNA-Cys
NZ_PYKE01000301.1	RefSeq	gene	4991	5077	.	+	.	ID=gene-C9F05_RS20585;Name=C9F05_RS20585;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS20585;old_locus_tag=C9F05_21150
NZ_PYKE01000301.1	tRNAscan-SE	tRNA	4991	5077	.	+	.	ID=rna-C9F05_RS20585;Parent=gene-C9F05_RS20585;anticodon=(pos:5025..5027);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS20585;product=tRNA-Leu
NZ_PYKE01000301.1	tRNAscan-SE	exon	4991	5077	.	+	.	ID=exon-C9F05_RS20585-1;Parent=rna-C9F05_RS20585;anticodon=(pos:5025..5027);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS20585;product=tRNA-Leu
NZ_PYKE01000301.1	RefSeq	gene	5327	5659	.	+	.	ID=gene-C9F05_RS20590;Name=C9F05_RS20590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20590;old_locus_tag=C9F05_21155
NZ_PYKE01000301.1	Protein Homology	CDS	5327	5659	.	+	0	ID=cds-WP_023209714.1;Parent=gene-C9F05_RS20590;Dbxref=GenBank:WP_023209714.1;Name=WP_023209714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460897.1;locus_tag=C9F05_RS20590;product=hypothetical protein;protein_id=WP_023209714.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	5873	7312	.	+	.	ID=gene-C9F05_RS20595;Name=C9F05_RS20595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20595;old_locus_tag=C9F05_21160
NZ_PYKE01000301.1	Protein Homology	CDS	5873	7312	.	+	0	ID=cds-WP_135370595.1;Parent=gene-C9F05_RS20595;Dbxref=GenBank:WP_135370595.1;Name=WP_135370595.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460896.1;locus_tag=C9F05_RS20595;product=SH3 domain-containing C40 family peptidase;protein_id=WP_135370595.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	7525	7851	.	+	.	ID=gene-C9F05_RS20600;Name=C9F05_RS20600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20600;old_locus_tag=C9F05_21165
NZ_PYKE01000301.1	Protein Homology	CDS	7525	7851	.	+	0	ID=cds-WP_000240837.1;Parent=gene-C9F05_RS20600;Dbxref=GenBank:WP_000240837.1;Name=WP_000240837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460895.1;locus_tag=C9F05_RS20600;product=glucose-6-phosphate dehydrogenase;protein_id=WP_000240837.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	8089	8754	.	+	.	ID=gene-C9F05_RS20605;Name=C9F05_RS20605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20605;old_locus_tag=C9F05_21170
NZ_PYKE01000301.1	Protein Homology	CDS	8089	8754	.	+	0	ID=cds-WP_000781521.1;Parent=gene-C9F05_RS20605;Dbxref=GenBank:WP_000781521.1;Name=WP_000781521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460894.1;locus_tag=C9F05_RS20605;product=YecA/YgfB family protein;protein_id=WP_000781521.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	8829	10040	.	-	.	ID=gene-C9F05_RS20610;Name=tyrP;gbkey=Gene;gene=tyrP;gene_biotype=protein_coding;locus_tag=C9F05_RS20610;old_locus_tag=C9F05_21175
NZ_PYKE01000301.1	Protein Homology	CDS	8829	10040	.	-	0	ID=cds-WP_001562965.1;Parent=gene-C9F05_RS20610;Dbxref=GenBank:WP_001562965.1;Name=WP_001562965.1;Ontology_term=GO:0015801,GO:0015173,GO:0005886;gbkey=CDS;gene=tyrP;go_component=plasma membrane|0005886||IEA;go_function=aromatic amino acid transmembrane transporter activity|0015173||IEA;go_process=aromatic amino acid transport|0015801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460893.1;locus_tag=C9F05_RS20610;product=tyrosine transporter TyrP;protein_id=WP_001562965.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	10267	10506	.	+	.	ID=gene-C9F05_RS20615;Name=C9F05_RS20615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20615;old_locus_tag=C9F05_21180
NZ_PYKE01000301.1	Protein Homology	CDS	10267	10506	.	+	0	ID=cds-WP_076741631.1;Parent=gene-C9F05_RS20615;Dbxref=GenBank:WP_076741631.1;Name=WP_076741631.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460892.1;locus_tag=C9F05_RS20615;product=YecH family metal-binding protein;protein_id=WP_076741631.1;transl_table=11
NZ_PYKE01000301.1	RefSeq	gene	10552	11049	.	-	.	ID=gene-C9F05_RS20620;Name=ftnA;gbkey=Gene;gene=ftnA;gene_biotype=protein_coding;locus_tag=C9F05_RS20620;old_locus_tag=C9F05_21185
NZ_PYKE01000301.1	Protein Homology	CDS	10552	11049	.	-	0	ID=cds-WP_000920613.1;Parent=gene-C9F05_RS20620;Dbxref=GenBank:WP_000920613.1;Name=WP_000920613.1;Ontology_term=GO:0006879,GO:0008199;gbkey=CDS;gene=ftnA;go_function=ferric iron binding|0008199||IEA;go_process=intracellular iron ion homeostasis|0006879||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000920608.1;locus_tag=C9F05_RS20620;product=non-heme ferritin;protein_id=WP_000920613.1;transl_table=11
##sequence-region NZ_PYKE01000271.1 1 11102
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000271.1	RefSeq	region	1	11102	.	+	.	ID=NZ_PYKE01000271.1:1..11102;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000271.1	RefSeq	gene	110	232	.	+	.	ID=gene-C9F05_RS18065;Name=C9F05_RS18065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18065;old_locus_tag=C9F05_18590
NZ_PYKE01000271.1	Protein Homology	CDS	110	232	.	+	0	ID=cds-WP_001519564.1;Parent=gene-C9F05_RS18065;Dbxref=GenBank:WP_001519564.1;Name=WP_001519564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461154.1;locus_tag=C9F05_RS18065;product=membrane protein;protein_id=WP_001519564.1;transl_table=11
NZ_PYKE01000271.1	RefSeq	gene	234	899	.	+	.	ID=gene-C9F05_RS18070;Name=C9F05_RS18070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18070;old_locus_tag=C9F05_18595
NZ_PYKE01000271.1	Protein Homology	CDS	234	899	.	+	0	ID=cds-WP_135370516.1;Parent=gene-C9F05_RS18070;Dbxref=GenBank:WP_135370516.1;Name=WP_135370516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461153.1;locus_tag=C9F05_RS18070;product=GNVR domain-containing protein;protein_id=WP_135370516.1;transl_table=11
NZ_PYKE01000271.1	RefSeq	gene	964	2145	.	-	.	ID=gene-C9F05_RS18075;Name=setB;gbkey=Gene;gene=setB;gene_biotype=protein_coding;locus_tag=C9F05_RS18075;old_locus_tag=C9F05_18600
NZ_PYKE01000271.1	Protein Homology	CDS	964	2145	.	-	0	ID=cds-WP_000551934.1;Parent=gene-C9F05_RS18075;Dbxref=GenBank:WP_000551934.1;Name=WP_000551934.1;Ontology_term=GO:0008643,GO:0055085,GO:0005351,GO:0022857,GO:0016020;gbkey=CDS;gene=setB;go_component=membrane|0016020||IEA;go_function=carbohydrate:proton symporter activity|0005351||IEA,transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461152.1;locus_tag=C9F05_RS18075;product=sugar efflux transporter SetB;protein_id=WP_000551934.1;transl_table=11
NZ_PYKE01000271.1	RefSeq	gene	2514	3644	.	+	.	ID=gene-C9F05_RS18080;Name=fruB;gbkey=Gene;gene=fruB;gene_biotype=protein_coding;locus_tag=C9F05_RS18080;old_locus_tag=C9F05_18605
NZ_PYKE01000271.1	Protein Homology	CDS	2514	3644	.	+	0	ID=cds-WP_000487280.1;Parent=gene-C9F05_RS18080;Dbxref=GenBank:WP_000487280.1;Name=WP_000487280.1;gbkey=CDS;gene=fruB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461151.1;locus_tag=C9F05_RS18080;product=fused PTS fructose transporter subunit IIA/HPr protein;protein_id=WP_000487280.1;transl_table=11
NZ_PYKE01000271.1	RefSeq	gene	3644	4582	.	+	.	ID=gene-C9F05_RS18085;Name=fruK;gbkey=Gene;gene=fruK;gene_biotype=protein_coding;locus_tag=C9F05_RS18085;old_locus_tag=C9F05_18610
NZ_PYKE01000271.1	Protein Homology	CDS	3644	4582	.	+	0	ID=cds-WP_000091249.1;Parent=gene-C9F05_RS18085;Dbxref=GenBank:WP_000091249.1;Name=WP_000091249.1;Ontology_term=GO:0008662,GO:0016773;gbkey=CDS;gene=fruK;go_function=1-phosphofructokinase activity|0008662||IEA,phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461150.1;locus_tag=C9F05_RS18085;product=1-phosphofructokinase;protein_id=WP_000091249.1;transl_table=11
NZ_PYKE01000271.1	RefSeq	gene	4599	6281	.	+	.	ID=gene-C9F05_RS18090;Name=fruA;gbkey=Gene;gene=fruA;gene_biotype=protein_coding;locus_tag=C9F05_RS18090;old_locus_tag=C9F05_18615
NZ_PYKE01000271.1	Protein Homology	CDS	4599	6281	.	+	0	ID=cds-WP_001749130.1;Parent=gene-C9F05_RS18090;Dbxref=GenBank:WP_001749130.1;Name=WP_001749130.1;Ontology_term=GO:0009401,GO:0008982,GO:0022877;gbkey=CDS;gene=fruA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461149.1;locus_tag=C9F05_RS18090;product=PTS fructose transporter subunit IIBC;protein_id=WP_001749130.1;transl_table=11
NZ_PYKE01000271.1	RefSeq	gene	6346	7203	.	-	.	ID=gene-C9F05_RS18095;Name=nfo;gbkey=Gene;gene=nfo;gene_biotype=protein_coding;locus_tag=C9F05_RS18095;old_locus_tag=C9F05_18620
NZ_PYKE01000271.1	Protein Homology	CDS	6346	7203	.	-	0	ID=cds-WP_000873906.1;Parent=gene-C9F05_RS18095;Dbxref=GenBank:WP_000873906.1;Name=WP_000873906.1;Ontology_term=GO:0006281,GO:0003677,GO:0008270;gbkey=CDS;gene=nfo;go_function=DNA binding|0003677||IEA,zinc ion binding|0008270||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461148.1;locus_tag=C9F05_RS18095;product=deoxyribonuclease IV;protein_id=WP_000873906.1;transl_table=11
NZ_PYKE01000271.1	RefSeq	gene	7282	8331	.	-	.	ID=gene-C9F05_RS18100;Name=C9F05_RS18100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18100;old_locus_tag=C9F05_18625
NZ_PYKE01000271.1	Protein Homology	CDS	7282	8331	.	-	0	ID=cds-WP_000137966.1;Parent=gene-C9F05_RS18100;Dbxref=GenBank:WP_000137966.1;Name=WP_000137966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461147.1;locus_tag=C9F05_RS18100;product=YeiH family protein;protein_id=WP_000137966.1;transl_table=11
NZ_PYKE01000271.1	RefSeq	gene	8452	9315	.	+	.	ID=gene-C9F05_RS18105;Name=yieE;gbkey=Gene;gene=yieE;gene_biotype=protein_coding;locus_tag=C9F05_RS18105;old_locus_tag=C9F05_18630
NZ_PYKE01000271.1	Protein Homology	CDS	8452	9315	.	+	0	ID=cds-WP_000548316.1;Parent=gene-C9F05_RS18105;Dbxref=GenBank:WP_000548316.1;Name=WP_000548316.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yieE;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461146.1;locus_tag=C9F05_RS18105;product=DNA-binding transcriptional regulator YeiE;protein_id=WP_000548316.1;transl_table=11
NZ_PYKE01000271.1	RefSeq	gene	9505	10974	.	+	.	ID=gene-C9F05_RS18110;Name=lysP;gbkey=Gene;gene=lysP;gene_biotype=protein_coding;locus_tag=C9F05_RS18110;old_locus_tag=C9F05_18635
NZ_PYKE01000271.1	Protein Homology	CDS	9505	10974	.	+	0	ID=cds-WP_000535000.1;Parent=gene-C9F05_RS18110;Dbxref=GenBank:WP_000535000.1;Name=WP_000535000.1;gbkey=CDS;gene=lysP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461145.1;locus_tag=C9F05_RS18110;product=lysine-specific permease;protein_id=WP_000535000.1;transl_table=11
##sequence-region NZ_PYKE01000143.1 1 10943
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000143.1	RefSeq	region	1	10943	.	+	.	ID=NZ_PYKE01000143.1:1..10943;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000143.1	RefSeq	gene	159	401	.	+	.	ID=gene-C9F05_RS10405;Name=C9F05_RS10405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10405;old_locus_tag=C9F05_10670
NZ_PYKE01000143.1	Protein Homology	CDS	159	401	.	+	0	ID=cds-WP_000639889.1;Parent=gene-C9F05_RS10405;Dbxref=GenBank:WP_000639889.1;Name=WP_000639889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461341.1;locus_tag=C9F05_RS10405;product=YfdY family protein;protein_id=WP_000639889.1;transl_table=11
NZ_PYKE01000143.1	RefSeq	gene	640	2031	.	-	.	ID=gene-C9F05_RS10410;Name=pgtP;gbkey=Gene;gene=pgtP;gene_biotype=protein_coding;locus_tag=C9F05_RS10410;old_locus_tag=C9F05_10675
NZ_PYKE01000143.1	Protein Homology	CDS	640	2031	.	-	0	ID=cds-WP_000955739.1;Parent=gene-C9F05_RS10410;Dbxref=GenBank:WP_000955739.1;Name=WP_000955739.1;Ontology_term=GO:0015760,GO:0035435,GO:0061513;gbkey=CDS;gene=pgtP;go_function=glucose 6-phosphate:phosphate antiporter activity|0061513||IEA;go_process=glucose-6-phosphate transport|0015760||IEA,phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461340.1;locus_tag=C9F05_RS10410;product=phosphoglycerate transporter PgtP;protein_id=WP_000955739.1;transl_table=11
NZ_PYKE01000143.1	RefSeq	gene	2467	3660	.	+	.	ID=gene-C9F05_RS10420;Name=pgtC;gbkey=Gene;gene=pgtC;gene_biotype=protein_coding;locus_tag=C9F05_RS10420;old_locus_tag=C9F05_10685
NZ_PYKE01000143.1	Protein Homology	CDS	2467	3660	.	+	0	ID=cds-WP_000467981.1;Parent=gene-C9F05_RS10420;Dbxref=GenBank:WP_000467981.1;Name=WP_000467981.1;gbkey=CDS;gene=pgtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461339.1;locus_tag=C9F05_RS10420;product=phosphoglycerate transport regulator PgtC;protein_id=WP_000467981.1;transl_table=11
NZ_PYKE01000143.1	RefSeq	gene	3657	5663	.	+	.	ID=gene-C9F05_RS10425;Name=pgtB;gbkey=Gene;gene=pgtB;gene_biotype=protein_coding;locus_tag=C9F05_RS10425;old_locus_tag=C9F05_10690
NZ_PYKE01000143.1	Protein Homology	CDS	3657	5663	.	+	0	ID=cds-WP_000678493.1;Parent=gene-C9F05_RS10425;Dbxref=GenBank:WP_000678493.1;Name=WP_000678493.1;Ontology_term=GO:0000160,GO:0000155,GO:0005524;gbkey=CDS;gene=pgtB;go_function=phosphorelay sensor kinase activity|0000155||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461338.1;locus_tag=C9F05_RS10425;product=two-component system sensor histidine kinase PgtB;protein_id=WP_000678493.1;transl_table=11
NZ_PYKE01000143.1	RefSeq	gene	5653	6900	.	+	.	ID=gene-C9F05_RS10430;Name=pgtA;gbkey=Gene;gene=pgtA;gene_biotype=protein_coding;locus_tag=C9F05_RS10430;old_locus_tag=C9F05_10695
NZ_PYKE01000143.1	Protein Homology	CDS	5653	6900	.	+	0	ID=cds-WP_000930843.1;Parent=gene-C9F05_RS10430;Dbxref=GenBank:WP_000930843.1;Name=WP_000930843.1;Ontology_term=GO:0000160,GO:0006355,GO:0005524,GO:0043565;gbkey=CDS;gene=pgtA;go_function=ATP binding|0005524||IEA,sequence-specific DNA binding|0043565||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461337.1;locus_tag=C9F05_RS10430;product=two-component system response regulator PgtA;protein_id=WP_000930843.1;transl_table=11
NZ_PYKE01000143.1	RefSeq	gene	7168	8106	.	+	.	ID=gene-C9F05_RS10435;Name=pgtE;gbkey=Gene;gene=pgtE;gene_biotype=protein_coding;locus_tag=C9F05_RS10435;old_locus_tag=C9F05_10700
NZ_PYKE01000143.1	Protein Homology	CDS	7168	8106	.	+	0	ID=cds-WP_000716009.1;Parent=gene-C9F05_RS10435;Dbxref=GenBank:WP_000716009.1;Name=WP_000716009.1;gbkey=CDS;gene=pgtE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461336.1;locus_tag=C9F05_RS10435;product=omptin family outer membrane protease PgtE;protein_id=WP_000716009.1;transl_table=11
NZ_PYKE01000143.1	RefSeq	pseudogene	8275	8619	.	+	.	ID=gene-C9F05_RS10440;Name=C9F05_RS10440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS10440;old_locus_tag=C9F05_10705;partial=true;pseudo=true;start_range=.,8275
NZ_PYKE01000143.1	Protein Homology	CDS	8275	8619	.	+	0	ID=cds-C9F05_RS10440;Parent=gene-C9F05_RS10440;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001029860.1;locus_tag=C9F05_RS10440;partial=true;product=lytic transglycosylase domain-containing protein;pseudo=true;start_range=.,8275;transl_table=11
NZ_PYKE01000143.1	RefSeq	pseudogene	8776	9133	.	+	.	ID=gene-C9F05_RS10445;Name=C9F05_RS10445;end_range=9133,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS10445;old_locus_tag=C9F05_10710;partial=true;pseudo=true
NZ_PYKE01000143.1	Protein Homology	CDS	8776	9133	.	+	0	ID=cds-C9F05_RS10445;Parent=gene-C9F05_RS10445;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=9133,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001543868.1;locus_tag=C9F05_RS10445;partial=true;product=phage head-binding domain-containing protein;pseudo=true;transl_table=11
NZ_PYKE01000143.1	RefSeq	gene	10177	10590	.	+	.	ID=gene-C9F05_RS10450;Name=C9F05_RS10450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10450
NZ_PYKE01000143.1	GeneMarkS-2+	CDS	10177	10590	.	+	0	ID=cds-WP_135370246.1;Parent=gene-C9F05_RS10450;Dbxref=GenBank:WP_135370246.1;Name=WP_135370246.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS10450;product=hypothetical protein;protein_id=WP_135370246.1;transl_table=11
NZ_PYKE01000143.1	RefSeq	pseudogene	10632	10943	.	-	.	ID=gene-C9F05_RS10455;Name=C9F05_RS10455;end_range=10943,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS10455;old_locus_tag=C9F05_10715;partial=true;pseudo=true
NZ_PYKE01000143.1	Protein Homology	CDS	10632	10943	.	-	0	ID=cds-C9F05_RS10455;Parent=gene-C9F05_RS10455;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=10943,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015995288.1;locus_tag=C9F05_RS10455;partial=true;product=DUF6056 family protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000186.1 1 10919
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000186.1	RefSeq	region	1	10919	.	+	.	ID=NZ_PYKE01000186.1:1..10919;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000186.1	RefSeq	gene	1	1629	.	+	.	ID=gene-C9F05_RS12340;Name=tmcA;gbkey=Gene;gene=tmcA;gene_biotype=protein_coding;locus_tag=C9F05_RS12340;old_locus_tag=C9F05_12690;partial=true;start_range=.,1
NZ_PYKE01000186.1	Protein Homology	CDS	1	1629	.	+	0	ID=cds-WP_135370323.1;Parent=gene-C9F05_RS12340;Dbxref=GenBank:WP_135370323.1;Name=WP_135370323.1;gbkey=CDS;gene=tmcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461420.1;locus_tag=C9F05_RS12340;partial=true;product=tRNA cytosine(34) acetyltransferase TmcA;protein_id=WP_135370323.1;start_range=.,1;transl_table=11
NZ_PYKE01000186.1	RefSeq	gene	1656	1856	.	-	.	ID=gene-C9F05_RS12345;Name=C9F05_RS12345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12345;old_locus_tag=C9F05_12695
NZ_PYKE01000186.1	Protein Homology	CDS	1656	1856	.	-	0	ID=cds-WP_000383839.1;Parent=gene-C9F05_RS12345;Dbxref=GenBank:WP_000383839.1;Name=WP_000383839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461419.1;locus_tag=C9F05_RS12345;product=YpfN family protein;protein_id=WP_000383839.1;transl_table=11
NZ_PYKE01000186.1	RefSeq	gene	1884	3011	.	-	.	ID=gene-C9F05_RS12350;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=C9F05_RS12350;old_locus_tag=C9F05_12700
NZ_PYKE01000186.1	Protein Homology	CDS	1884	3011	.	-	0	ID=cds-WP_135370324.1;Parent=gene-C9F05_RS12350;Dbxref=GenBank:WP_135370324.1;Name=WP_135370324.1;Ontology_term=GO:0009089,GO:0009014;gbkey=CDS;gene=dapE;go_function=succinyl-diaminopimelate desuccinylase activity|0009014||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020078199.1;locus_tag=C9F05_RS12350;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_135370324.1;transl_table=11
NZ_PYKE01000186.1	RefSeq	gene	3015	3371	.	-	.	ID=gene-C9F05_RS12355;Name=C9F05_RS12355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12355;old_locus_tag=C9F05_12705
NZ_PYKE01000186.1	Protein Homology	CDS	3015	3371	.	-	0	ID=cds-WP_000631923.1;Parent=gene-C9F05_RS12355;Dbxref=GenBank:WP_000631923.1;Name=WP_000631923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461417.1;locus_tag=C9F05_RS12355;product=ArsC family reductase;protein_id=WP_000631923.1;transl_table=11
NZ_PYKE01000186.1	RefSeq	gene	3784	3843	.	+	.	ID=gene-C9F05_RS12360;Name=ypfM;gbkey=Gene;gene=ypfM;gene_biotype=protein_coding;locus_tag=C9F05_RS12360;old_locus_tag=C9F05_12710
NZ_PYKE01000186.1	Protein Homology	CDS	3784	3843	.	+	0	ID=cds-WP_001386977.1;Parent=gene-C9F05_RS12360;Dbxref=GenBank:WP_001386977.1;Name=WP_001386977.1;gbkey=CDS;gene=ypfM;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165325.1;locus_tag=C9F05_RS12360;product=protein YpfM;protein_id=WP_001386977.1;transl_table=11
NZ_PYKE01000186.1	RefSeq	gene	3945	7058	.	-	.	ID=gene-C9F05_RS12365;Name=acrD;gbkey=Gene;gene=acrD;gene_biotype=protein_coding;locus_tag=C9F05_RS12365;old_locus_tag=C9F05_12715
NZ_PYKE01000186.1	Protein Homology	CDS	3945	7058	.	-	0	ID=cds-WP_048348771.1;Parent=gene-C9F05_RS12365;Dbxref=GenBank:WP_048348771.1;Name=WP_048348771.1;Ontology_term=GO:0042908,GO:0015562;gbkey=CDS;gene=acrD;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461416.1;locus_tag=C9F05_RS12365;product=multidrug efflux RND transporter permease AcrD;protein_id=WP_048348771.1;transl_table=11
NZ_PYKE01000186.1	RefSeq	gene	7243	8943	.	-	.	ID=gene-C9F05_RS12370;Name=narQ;gbkey=Gene;gene=narQ;gene_biotype=protein_coding;locus_tag=C9F05_RS12370;old_locus_tag=C9F05_12720
NZ_PYKE01000186.1	Protein Homology	CDS	7243	8943	.	-	0	ID=cds-WP_000216814.1;Parent=gene-C9F05_RS12370;Dbxref=GenBank:WP_000216814.1;Name=WP_000216814.1;Ontology_term=GO:0000160,GO:0000155,GO:0046983,GO:0016020;gbkey=CDS;gene=narQ;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein dimerization activity|0046983||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461415.1;locus_tag=C9F05_RS12370;product=nitrate/nitrite two-component system sensor histidine kinase NarQ;protein_id=WP_000216814.1;transl_table=11
NZ_PYKE01000186.1	RefSeq	gene	9129	10919	.	+	.	ID=gene-C9F05_RS12375;Name=aegA;end_range=10919,.;gbkey=Gene;gene=aegA;gene_biotype=protein_coding;locus_tag=C9F05_RS12375;old_locus_tag=C9F05_12725;partial=true
NZ_PYKE01000186.1	Protein Homology	CDS	9129	10919	.	+	0	ID=cds-WP_135370325.1;Parent=gene-C9F05_RS12375;Dbxref=GenBank:WP_135370325.1;Name=WP_135370325.1;Ontology_term=GO:0016491;end_range=10919,.;gbkey=CDS;gene=aegA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461414.1;locus_tag=C9F05_RS12375;partial=true;product=formate-dependent uric acid utilization protein AegA;protein_id=WP_135370325.1;transl_table=11
##sequence-region NZ_PYKE01000171.1 1 10844
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000171.1	RefSeq	region	1	10844	.	+	.	ID=NZ_PYKE01000171.1:1..10844;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000171.1	RefSeq	gene	299	1819	.	-	.	ID=gene-C9F05_RS11730;Name=C9F05_RS11730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11730;old_locus_tag=C9F05_12060
NZ_PYKE01000171.1	Protein Homology	CDS	299	1819	.	-	0	ID=cds-WP_135370304.1;Parent=gene-C9F05_RS11730;Dbxref=GenBank:WP_135370304.1;Name=WP_135370304.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462131.1;locus_tag=C9F05_RS11730;product=methyl-accepting chemotaxis protein;protein_id=WP_135370304.1;transl_table=11
NZ_PYKE01000171.1	RefSeq	gene	2249	3628	.	+	.	ID=gene-C9F05_RS11735;Name=ygjG;gbkey=Gene;gene=ygjG;gene_biotype=protein_coding;locus_tag=C9F05_RS11735;old_locus_tag=C9F05_12070
NZ_PYKE01000171.1	Protein Homology	CDS	2249	3628	.	+	0	ID=cds-WP_001520281.1;Parent=gene-C9F05_RS11735;Dbxref=GenBank:WP_001520281.1;Name=WP_001520281.1;Ontology_term=GO:0009447,GO:0030170,GO:0033094;gbkey=CDS;gene=ygjG;go_function=pyridoxal phosphate binding|0030170||IEA,putrescine--2-oxoglutarate transaminase activity|0033094||IEA;go_process=putrescine catabolic process|0009447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894971.1;locus_tag=C9F05_RS11735;product=putrescine aminotransferase;protein_id=WP_001520281.1;transl_table=11
NZ_PYKE01000171.1	RefSeq	gene	3799	5817	.	+	.	ID=gene-C9F05_RS11740;Name=C9F05_RS11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11740;old_locus_tag=C9F05_12075
NZ_PYKE01000171.1	Protein Homology	CDS	3799	5817	.	+	0	ID=cds-WP_135370305.1;Parent=gene-C9F05_RS11740;Dbxref=GenBank:WP_135370305.1;Name=WP_135370305.1;Ontology_term=GO:0010181,GO:0016491;gbkey=CDS;go_function=FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462133.1;locus_tag=C9F05_RS11740;product=oxidoreductase;protein_id=WP_135370305.1;transl_table=11
NZ_PYKE01000171.1	RefSeq	gene	5898	7034	.	-	.	ID=gene-C9F05_RS11745;Name=rlmG;gbkey=Gene;gene=rlmG;gene_biotype=protein_coding;locus_tag=C9F05_RS11745;old_locus_tag=C9F05_12080
NZ_PYKE01000171.1	Protein Homology	CDS	5898	7034	.	-	0	ID=cds-WP_000019989.1;Parent=gene-C9F05_RS11745;Dbxref=GenBank:WP_000019989.1;Name=WP_000019989.1;Ontology_term=GO:0031167,GO:0003676,GO:0008990;gbkey=CDS;gene=rlmG;go_function=nucleic acid binding|0003676||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462134.1;locus_tag=C9F05_RS11745;product=23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG;protein_id=WP_000019989.1;transl_table=11
NZ_PYKE01000171.1	RefSeq	gene	7120	7617	.	+	.	ID=gene-C9F05_RS11750;Name=C9F05_RS11750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11750;old_locus_tag=C9F05_12085
NZ_PYKE01000171.1	Protein Homology	CDS	7120	7617	.	+	0	ID=cds-WP_000202966.1;Parent=gene-C9F05_RS11750;Dbxref=GenBank:WP_000202966.1;Name=WP_000202966.1;Ontology_term=GO:0008270,GO:0016787,GO:0046872;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462135.1;locus_tag=C9F05_RS11750;product=M48 metallopeptidase family protein;protein_id=WP_000202966.1;transl_table=11
NZ_PYKE01000171.1	RefSeq	gene	7769	8461	.	+	.	ID=gene-C9F05_RS11755;Name=C9F05_RS11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11755;old_locus_tag=C9F05_12090
NZ_PYKE01000171.1	Protein Homology	CDS	7769	8461	.	+	0	ID=cds-WP_000951045.1;Parent=gene-C9F05_RS11755;Dbxref=GenBank:WP_000951045.1;Name=WP_000951045.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462136.1;locus_tag=C9F05_RS11755;product=SanA/YdcF family protein;protein_id=WP_000951045.1;transl_table=11
NZ_PYKE01000171.1	RefSeq	gene	8550	9548	.	+	.	ID=gene-C9F05_RS11760;Name=C9F05_RS11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11760;old_locus_tag=C9F05_12095
NZ_PYKE01000171.1	Protein Homology	CDS	8550	9548	.	+	0	ID=cds-WP_115276167.1;Parent=gene-C9F05_RS11760;Dbxref=GenBank:WP_115276167.1;Name=WP_115276167.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462137.1;locus_tag=C9F05_RS11760;product=Gfo/Idh/MocA family protein;protein_id=WP_115276167.1;transl_table=11
NZ_PYKE01000171.1	RefSeq	gene	9818	10786	.	+	.	ID=gene-C9F05_RS11765;Name=C9F05_RS11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11765;old_locus_tag=C9F05_12100
NZ_PYKE01000171.1	Protein Homology	CDS	9818	10786	.	+	0	ID=cds-WP_001098833.1;Parent=gene-C9F05_RS11765;Dbxref=GenBank:WP_001098833.1;Name=WP_001098833.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462138.1;locus_tag=C9F05_RS11765;product=TerC family protein;protein_id=WP_001098833.1;transl_table=11
##sequence-region NZ_PYKE01000261.1 1 10840
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000261.1	RefSeq	region	1	10840	.	+	.	ID=NZ_PYKE01000261.1:1..10840;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000261.1	RefSeq	gene	70	144	.	-	.	ID=gene-C9F05_RS17080;Name=C9F05_RS17080;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17080;old_locus_tag=C9F05_17575
NZ_PYKE01000261.1	tRNAscan-SE	tRNA	70	144	.	-	.	ID=rna-C9F05_RS17080;Parent=gene-C9F05_RS17080;anticodon=(pos:complement(110..112));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17080;product=tRNA-Gln
NZ_PYKE01000261.1	tRNAscan-SE	exon	70	144	.	-	.	ID=exon-C9F05_RS17080-1;Parent=rna-C9F05_RS17080;anticodon=(pos:complement(110..112));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17080;product=tRNA-Gln
NZ_PYKE01000261.1	RefSeq	gene	168	252	.	-	.	ID=gene-C9F05_RS17085;Name=C9F05_RS17085;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17085;old_locus_tag=C9F05_17580
NZ_PYKE01000261.1	tRNAscan-SE	tRNA	168	252	.	-	.	ID=rna-C9F05_RS17085;Parent=gene-C9F05_RS17085;anticodon=(pos:complement(216..218));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17085;product=tRNA-Leu
NZ_PYKE01000261.1	tRNAscan-SE	exon	168	252	.	-	.	ID=exon-C9F05_RS17085-1;Parent=rna-C9F05_RS17085;anticodon=(pos:complement(216..218));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17085;product=tRNA-Leu
NZ_PYKE01000261.1	RefSeq	gene	261	337	.	-	.	ID=gene-C9F05_RS17090;Name=C9F05_RS17090;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17090;old_locus_tag=C9F05_17585
NZ_PYKE01000261.1	tRNAscan-SE	tRNA	261	337	.	-	.	ID=rna-C9F05_RS17090;Parent=gene-C9F05_RS17090;anticodon=(pos:complement(301..303));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17090;product=tRNA-Met
NZ_PYKE01000261.1	tRNAscan-SE	exon	261	337	.	-	.	ID=exon-C9F05_RS17090-1;Parent=rna-C9F05_RS17090;anticodon=(pos:complement(301..303));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17090;product=tRNA-Met
NZ_PYKE01000261.1	RefSeq	gene	559	2223	.	-	.	ID=gene-C9F05_RS17095;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=C9F05_RS17095;old_locus_tag=C9F05_17590
NZ_PYKE01000261.1	Protein Homology	CDS	559	2223	.	-	0	ID=cds-WP_000337034.1;Parent=gene-C9F05_RS17095;Dbxref=GenBank:WP_000337034.1;Name=WP_000337034.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001724523.1;locus_tag=C9F05_RS17095;product=asparagine synthase B;protein_id=WP_000337034.1;transl_table=11
NZ_PYKE01000261.1	RefSeq	gene	2513	3265	.	-	.	ID=gene-C9F05_RS17100;Name=nagD;gbkey=Gene;gene=nagD;gene_biotype=protein_coding;locus_tag=C9F05_RS17100;old_locus_tag=C9F05_17595
NZ_PYKE01000261.1	Protein Homology	CDS	2513	3265	.	-	0	ID=cds-WP_000153143.1;Parent=gene-C9F05_RS17100;Dbxref=GenBank:WP_000153143.1;Name=WP_000153143.1;gbkey=CDS;gene=nagD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007373873.1;locus_tag=C9F05_RS17100;product=ribonucleotide monophosphatase NagD;protein_id=WP_000153143.1;transl_table=11
NZ_PYKE01000261.1	RefSeq	gene	3312	4532	.	-	.	ID=gene-C9F05_RS17105;Name=nagC;gbkey=Gene;gene=nagC;gene_biotype=protein_coding;gene_synonym=nagR;locus_tag=C9F05_RS17105;old_locus_tag=C9F05_17600
NZ_PYKE01000261.1	Protein Homology	CDS	3312	4532	.	-	0	ID=cds-WP_000187578.1;Parent=gene-C9F05_RS17105;Dbxref=GenBank:WP_000187578.1;Name=WP_000187578.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=nagC;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459667.1;locus_tag=C9F05_RS17105;product=DNA-binding transcriptional regulator NagC;protein_id=WP_000187578.1;transl_table=11
NZ_PYKE01000261.1	RefSeq	gene	4537	5691	.	-	.	ID=gene-C9F05_RS17110;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=C9F05_RS17110;old_locus_tag=C9F05_17605
NZ_PYKE01000261.1	Protein Homology	CDS	4537	5691	.	-	0	ID=cds-WP_000271186.1;Parent=gene-C9F05_RS17110;Dbxref=GenBank:WP_000271186.1;Name=WP_000271186.1;Ontology_term=GO:0006044,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459668.1;locus_tag=C9F05_RS17110;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_000271186.1;transl_table=11
NZ_PYKE01000261.1	RefSeq	gene	5751	6551	.	-	.	ID=gene-C9F05_RS17115;Name=nagB;gbkey=Gene;gene=nagB;gene_biotype=protein_coding;locus_tag=C9F05_RS17115;old_locus_tag=C9F05_17610
NZ_PYKE01000261.1	Protein Homology	CDS	5751	6551	.	-	0	ID=cds-WP_001237059.1;Parent=gene-C9F05_RS17115;Dbxref=GenBank:WP_001237059.1;Name=WP_001237059.1;Ontology_term=GO:0006044,GO:0004342;gbkey=CDS;gene=nagB;go_function=glucosamine-6-phosphate deaminase activity|0004342||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008805656.1;locus_tag=C9F05_RS17115;product=glucosamine-6-phosphate deaminase;protein_id=WP_001237059.1;transl_table=11
NZ_PYKE01000261.1	RefSeq	gene	6878	8830	.	+	.	ID=gene-C9F05_RS17120;Name=nagE;gbkey=Gene;gene=nagE;gene_biotype=protein_coding;locus_tag=C9F05_RS17120;old_locus_tag=C9F05_17615
NZ_PYKE01000261.1	Protein Homology	CDS	6878	8830	.	+	0	ID=cds-WP_001023069.1;Parent=gene-C9F05_RS17120;Dbxref=GenBank:WP_001023069.1;Name=WP_001023069.1;Ontology_term=GO:0009401,GO:0008982,GO:0015572,GO:0016020;gbkey=CDS;gene=nagE;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,N-acetylglucosamine transmembrane transporter activity|0015572||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459670.1;locus_tag=C9F05_RS17120;product=PTS N-acetyl glucosamine transporter subunit IIABC;protein_id=WP_001023069.1;transl_table=11
NZ_PYKE01000261.1	RefSeq	gene	9041	10708	.	+	.	ID=gene-C9F05_RS17125;Name=glnS;gbkey=Gene;gene=glnS;gene_biotype=protein_coding;locus_tag=C9F05_RS17125;old_locus_tag=C9F05_17620
NZ_PYKE01000261.1	Protein Homology	CDS	9041	10708	.	+	0	ID=cds-WP_001287181.1;Parent=gene-C9F05_RS17125;Dbxref=GenBank:WP_001287181.1;Name=WP_001287181.1;Ontology_term=GO:0006425,GO:0000166,GO:0004819,GO:0005524,GO:0005737;gbkey=CDS;gene=glnS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glutamine-tRNA ligase activity|0004819||IEA,ATP binding|0005524||IEA;go_process=glutaminyl-tRNA aminoacylation|0006425||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459671.1;locus_tag=C9F05_RS17125;product=glutamine--tRNA ligase;protein_id=WP_001287181.1;transl_table=11
##sequence-region NZ_PYKE01000231.1 1 47646
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000231.1	RefSeq	region	1	47646	.	+	.	ID=NZ_PYKE01000231.1:1..47646;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000231.1	RefSeq	gene	87	812	.	+	.	ID=gene-C9F05_RS15030;Name=C9F05_RS15030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15030;old_locus_tag=C9F05_15455
NZ_PYKE01000231.1	Protein Homology	CDS	87	812	.	+	0	ID=cds-WP_000936652.1;Parent=gene-C9F05_RS15030;Dbxref=GenBank:WP_000936652.1;Name=WP_000936652.1;Ontology_term=GO:0006355;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463406.1;locus_tag=C9F05_RS15030;product=response regulator transcription factor;protein_id=WP_000936652.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	773	1447	.	+	.	ID=gene-C9F05_RS15035;Name=bglJ;gbkey=Gene;gene=bglJ;gene_biotype=protein_coding;locus_tag=C9F05_RS15035;old_locus_tag=C9F05_15460
NZ_PYKE01000231.1	Protein Homology	CDS	773	1447	.	+	0	ID=cds-WP_000431547.1;Parent=gene-C9F05_RS15035;Dbxref=GenBank:WP_000431547.1;Name=WP_000431547.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=bglJ;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463407.3;locus_tag=C9F05_RS15035;product=DNA-binding transcriptional activator BglJ;protein_id=WP_000431547.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	1498	1956	.	-	.	ID=gene-C9F05_RS15040;Name=C9F05_RS15040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15040;old_locus_tag=C9F05_15465
NZ_PYKE01000231.1	Protein Homology	CDS	1498	1956	.	-	0	ID=cds-WP_000058276.1;Parent=gene-C9F05_RS15040;Dbxref=GenBank:WP_000058276.1;Name=WP_000058276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463408.1;locus_tag=C9F05_RS15040;product=YbaK/EbsC family protein;protein_id=WP_000058276.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	2107	2895	.	-	.	ID=gene-C9F05_RS15045;Name=fhuF;gbkey=Gene;gene=fhuF;gene_biotype=protein_coding;locus_tag=C9F05_RS15045;old_locus_tag=C9F05_15470
NZ_PYKE01000231.1	Protein Homology	CDS	2107	2895	.	-	0	ID=cds-WP_135370426.1;Parent=gene-C9F05_RS15045;Dbxref=GenBank:WP_135370426.1;Name=WP_135370426.1;Ontology_term=GO:0051537;gbkey=CDS;gene=fhuF;go_function=2 iron%2C 2 sulfur cluster binding|0051537||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463409.1;locus_tag=C9F05_RS15045;product=siderophore-iron reductase FhuF;protein_id=WP_135370426.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	3016	4080	.	-	.	ID=gene-C9F05_RS15050;Name=C9F05_RS15050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15050;old_locus_tag=C9F05_15475
NZ_PYKE01000231.1	Protein Homology	CDS	3016	4080	.	-	0	ID=cds-WP_000211207.1;Parent=gene-C9F05_RS15050;Dbxref=GenBank:WP_000211207.1;Name=WP_000211207.1;Ontology_term=GO:0005525,GO:0046872,GO:0052621,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463410.1;locus_tag=C9F05_RS15050;product=GGDEF domain-containing protein;protein_id=WP_000211207.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	4331	4567	.	+	.	ID=gene-C9F05_RS15055;Name=C9F05_RS15055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15055;old_locus_tag=C9F05_15480
NZ_PYKE01000231.1	Protein Homology	CDS	4331	4567	.	+	0	ID=cds-WP_000941877.1;Parent=gene-C9F05_RS15055;Dbxref=GenBank:WP_000941877.1;Name=WP_000941877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463411.1;locus_tag=C9F05_RS15055;product=DUF1435 domain-containing protein;protein_id=WP_000941877.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	4599	4685	.	-	.	ID=gene-C9F05_RS15060;Name=C9F05_RS15060;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS15060;old_locus_tag=C9F05_15485
NZ_PYKE01000231.1	tRNAscan-SE	tRNA	4599	4685	.	-	.	ID=rna-C9F05_RS15060;Parent=gene-C9F05_RS15060;anticodon=(pos:complement(4649..4651));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15060;product=tRNA-Leu
NZ_PYKE01000231.1	tRNAscan-SE	exon	4599	4685	.	-	.	ID=exon-C9F05_RS15060-1;Parent=rna-C9F05_RS15060;anticodon=(pos:complement(4649..4651));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15060;product=tRNA-Leu
NZ_PYKE01000231.1	RefSeq	gene	4717	4803	.	-	.	ID=gene-C9F05_RS15065;Name=C9F05_RS15065;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS15065;old_locus_tag=C9F05_15490
NZ_PYKE01000231.1	tRNAscan-SE	tRNA	4717	4803	.	-	.	ID=rna-C9F05_RS15065;Parent=gene-C9F05_RS15065;anticodon=(pos:complement(4767..4769));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15065;product=tRNA-Leu
NZ_PYKE01000231.1	tRNAscan-SE	exon	4717	4803	.	-	.	ID=exon-C9F05_RS15065-1;Parent=rna-C9F05_RS15065;anticodon=(pos:complement(4767..4769));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15065;product=tRNA-Leu
NZ_PYKE01000231.1	RefSeq	gene	4831	4917	.	-	.	ID=gene-C9F05_RS15070;Name=C9F05_RS15070;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS15070;old_locus_tag=C9F05_15495
NZ_PYKE01000231.1	tRNAscan-SE	tRNA	4831	4917	.	-	.	ID=rna-C9F05_RS15070;Parent=gene-C9F05_RS15070;anticodon=(pos:complement(4881..4883));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15070;product=tRNA-Leu
NZ_PYKE01000231.1	tRNAscan-SE	exon	4831	4917	.	-	.	ID=exon-C9F05_RS15070-1;Parent=rna-C9F05_RS15070;anticodon=(pos:complement(4881..4883));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15070;product=tRNA-Leu
NZ_PYKE01000231.1	RefSeq	gene	5108	6136	.	-	.	ID=gene-C9F05_RS15075;Name=rsmC;gbkey=Gene;gene=rsmC;gene_biotype=protein_coding;locus_tag=C9F05_RS15075;old_locus_tag=C9F05_15500
NZ_PYKE01000231.1	Protein Homology	CDS	5108	6136	.	-	0	ID=cds-WP_001272273.1;Parent=gene-C9F05_RS15075;Dbxref=GenBank:WP_001272273.1;Name=WP_001272273.1;Ontology_term=GO:0006364,GO:0003676,GO:0008990;gbkey=CDS;gene=rsmC;go_function=nucleic acid binding|0003676||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463412.1;locus_tag=C9F05_RS15075;product=16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC;protein_id=WP_001272273.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	6239	6676	.	+	.	ID=gene-C9F05_RS15080;Name=C9F05_RS15080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15080;old_locus_tag=C9F05_15505
NZ_PYKE01000231.1	Protein Homology	CDS	6239	6676	.	+	0	ID=cds-WP_000203996.1;Parent=gene-C9F05_RS15080;Dbxref=GenBank:WP_000203996.1;Name=WP_000203996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463413.1;locus_tag=C9F05_RS15080;product=DNA polymerase III subunit psi;protein_id=WP_000203996.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	6621	7067	.	+	.	ID=gene-C9F05_RS15085;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=C9F05_RS15085;old_locus_tag=C9F05_15510
NZ_PYKE01000231.1	Protein Homology	CDS	6621	7067	.	+	0	ID=cds-WP_001092438.1;Parent=gene-C9F05_RS15085;Dbxref=GenBank:WP_001092438.1;Name=WP_001092438.1;Ontology_term=GO:0006474,GO:0008080;gbkey=CDS;gene=rimI;go_function=N-acetyltransferase activity|0008080||IEA;go_process=N-terminal protein amino acid acetylation|0006474||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463414.1;locus_tag=C9F05_RS15085;product=ribosomal protein S18-alanine N-acetyltransferase;protein_id=WP_001092438.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	7089	7766	.	+	.	ID=gene-C9F05_RS15090;Name=yjjG;gbkey=Gene;gene=yjjG;gene_biotype=protein_coding;locus_tag=C9F05_RS15090;old_locus_tag=C9F05_15515
NZ_PYKE01000231.1	Protein Homology	CDS	7089	7766	.	+	0	ID=cds-WP_000870686.1;Parent=gene-C9F05_RS15090;Dbxref=GenBank:WP_000870686.1;Name=WP_000870686.1;Ontology_term=GO:0008253;gbkey=CDS;gene=yjjG;go_function=5'-nucleotidase activity|0008253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313359.1;locus_tag=C9F05_RS15090;product=pyrimidine 5'-nucleotidase;protein_id=WP_000870686.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	7858	9447	.	+	.	ID=gene-C9F05_RS15095;Name=prfC;gbkey=Gene;gene=prfC;gene_biotype=protein_coding;locus_tag=C9F05_RS15095;old_locus_tag=C9F05_15520
NZ_PYKE01000231.1	Protein Homology	CDS	7858	9447	.	+	0	ID=cds-WP_000175966.1;Parent=gene-C9F05_RS15095;Dbxref=GenBank:WP_000175966.1;Name=WP_000175966.1;Ontology_term=GO:0006415,GO:0003747,GO:0003924,GO:0005525;gbkey=CDS;gene=prfC;go_function=translation release factor activity|0003747||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123889.1;locus_tag=C9F05_RS15095;product=peptide chain release factor 3;protein_id=WP_000175966.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	9849	10466	.	+	.	ID=gene-C9F05_RS15100;Name=osmY;gbkey=Gene;gene=osmY;gene_biotype=protein_coding;locus_tag=C9F05_RS15100;old_locus_tag=C9F05_15525
NZ_PYKE01000231.1	Protein Homology	CDS	9849	10466	.	+	0	ID=cds-WP_000178963.1;Parent=gene-C9F05_RS15100;Dbxref=GenBank:WP_000178963.1;Name=WP_000178963.1;gbkey=CDS;gene=osmY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463417.1;locus_tag=C9F05_RS15100;product=molecular chaperone OsmY;protein_id=WP_000178963.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	10595	10756	.	+	.	ID=gene-C9F05_RS15105;Name=C9F05_RS15105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15105;old_locus_tag=C9F05_15530
NZ_PYKE01000231.1	Protein Homology	CDS	10595	10756	.	+	0	ID=cds-WP_000490276.1;Parent=gene-C9F05_RS15105;Dbxref=GenBank:WP_000490276.1;Name=WP_000490276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002887716.1;locus_tag=C9F05_RS15105;product=DUF1328 domain-containing protein;protein_id=WP_000490276.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	10880	11953	.	+	.	ID=gene-C9F05_RS15110;Name=C9F05_RS15110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15110;old_locus_tag=C9F05_15535
NZ_PYKE01000231.1	Protein Homology	CDS	10880	11953	.	+	0	ID=cds-WP_000531546.1;Parent=gene-C9F05_RS15110;Dbxref=GenBank:WP_000531546.1;Name=WP_000531546.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463419.1;locus_tag=C9F05_RS15110;product=patatin-like phospholipase family protein;protein_id=WP_000531546.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	11950	12723	.	+	.	ID=gene-C9F05_RS15115;Name=C9F05_RS15115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15115;old_locus_tag=C9F05_15540
NZ_PYKE01000231.1	Protein Homology	CDS	11950	12723	.	+	0	ID=cds-WP_000119005.1;Parent=gene-C9F05_RS15115;Dbxref=GenBank:WP_000119005.1;Name=WP_000119005.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463420.1;locus_tag=C9F05_RS15115;product=metal-dependent hydrolase;protein_id=WP_000119005.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	12756	13619	.	-	.	ID=gene-C9F05_RS15120;Name=C9F05_RS15120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15120;old_locus_tag=C9F05_15545
NZ_PYKE01000231.1	Protein Homology	CDS	12756	13619	.	-	0	ID=cds-WP_001064940.1;Parent=gene-C9F05_RS15120;Dbxref=GenBank:WP_001064940.1;Name=WP_001064940.1;Ontology_term=GO:0051539,GO:1904047;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463421.1;locus_tag=C9F05_RS15120;product=YjjW family glycine radical enzyme activase;protein_id=WP_001064940.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	13591	15141	.	-	.	ID=gene-C9F05_RS15125;Name=C9F05_RS15125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15125;old_locus_tag=C9F05_15550
NZ_PYKE01000231.1	Protein Homology	CDS	13591	15141	.	-	0	ID=cds-WP_001111671.1;Parent=gene-C9F05_RS15125;Dbxref=GenBank:WP_001111671.1;Name=WP_001111671.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463422.1;locus_tag=C9F05_RS15125;product=YjjI family glycine radical enzyme;protein_id=WP_001111671.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	15401	16180	.	+	.	ID=gene-C9F05_RS15130;Name=deoC;gbkey=Gene;gene=deoC;gene_biotype=protein_coding;locus_tag=C9F05_RS15130;old_locus_tag=C9F05_15555
NZ_PYKE01000231.1	Protein Homology	CDS	15401	16180	.	+	0	ID=cds-WP_001519713.1;Parent=gene-C9F05_RS15130;Dbxref=GenBank:WP_001519713.1;Name=WP_001519713.1;Ontology_term=GO:0009264,GO:0004139,GO:0005737;gbkey=CDS;gene=deoC;go_component=cytoplasm|0005737||IEA;go_function=deoxyribose-phosphate aldolase activity|0004139||IEA;go_process=deoxyribonucleotide catabolic process|0009264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005097947.1;locus_tag=C9F05_RS15130;product=deoxyribose-phosphate aldolase;protein_id=WP_001519713.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	16304	17626	.	+	.	ID=gene-C9F05_RS15135;Name=deoA;gbkey=Gene;gene=deoA;gene_biotype=protein_coding;locus_tag=C9F05_RS15135;old_locus_tag=C9F05_15560
NZ_PYKE01000231.1	Protein Homology	CDS	16304	17626	.	+	0	ID=cds-WP_000477838.1;Parent=gene-C9F05_RS15135;Dbxref=GenBank:WP_000477838.1;Name=WP_000477838.1;Ontology_term=GO:0006213,GO:0009032;gbkey=CDS;gene=deoA;go_function=thymidine phosphorylase activity|0009032||IEA;go_process=pyrimidine nucleoside metabolic process|0006213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123902.1;locus_tag=C9F05_RS15135;product=thymidine phosphorylase;protein_id=WP_000477838.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	17678	18901	.	+	.	ID=gene-C9F05_RS15140;Name=deoB;gbkey=Gene;gene=deoB;gene_biotype=protein_coding;locus_tag=C9F05_RS15140;old_locus_tag=C9F05_15565
NZ_PYKE01000231.1	Protein Homology	CDS	17678	18901	.	+	0	ID=cds-WP_000816454.1;Parent=gene-C9F05_RS15140;Dbxref=GenBank:WP_000816454.1;Name=WP_000816454.1;Ontology_term=GO:0009117,GO:0043094,GO:0000287,GO:0008973,GO:0005737;gbkey=CDS;gene=deoB;go_component=cytoplasm|0005737||IEA;go_function=magnesium ion binding|0000287||IEA,phosphopentomutase activity|0008973||IEA;go_process=nucleotide metabolic process|0009117||IEA,metabolic compound salvage|0043094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463425.1;locus_tag=C9F05_RS15140;product=phosphopentomutase;protein_id=WP_000816454.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	19111	19830	.	+	.	ID=gene-C9F05_RS15145;Name=deoD;gbkey=Gene;gene=deoD;gene_biotype=protein_coding;locus_tag=C9F05_RS15145;old_locus_tag=C9F05_15570
NZ_PYKE01000231.1	Protein Homology	CDS	19111	19830	.	+	0	ID=cds-WP_000224870.1;Parent=gene-C9F05_RS15145;Dbxref=GenBank:WP_000224870.1;Name=WP_000224870.1;Ontology_term=GO:0006139,GO:0004731;gbkey=CDS;gene=deoD;go_function=purine-nucleoside phosphorylase activity|0004731||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463426.1;locus_tag=C9F05_RS15145;product=purine-nucleoside phosphorylase;protein_id=WP_000224870.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	19868	20440	.	-	.	ID=gene-C9F05_RS15150;Name=C9F05_RS15150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15150;old_locus_tag=C9F05_15575
NZ_PYKE01000231.1	Protein Homology	CDS	19868	20440	.	-	0	ID=cds-WP_000841604.1;Parent=gene-C9F05_RS15150;Dbxref=GenBank:WP_000841604.1;Name=WP_000841604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463427.1;locus_tag=C9F05_RS15150;product=outer membrane protein;protein_id=WP_000841604.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	20437	22845	.	-	.	ID=gene-C9F05_RS15155;Name=C9F05_RS15155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15155;old_locus_tag=C9F05_15580
NZ_PYKE01000231.1	Protein Homology	CDS	20437	22845	.	-	0	ID=cds-WP_024798854.1;Parent=gene-C9F05_RS15155;Dbxref=GenBank:WP_024798854.1;Name=WP_024798854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463428.1;locus_tag=C9F05_RS15155;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_024798854.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	22859	23566	.	-	.	ID=gene-C9F05_RS15160;Name=stjC;gbkey=Gene;gene=stjC;gene_biotype=protein_coding;locus_tag=C9F05_RS15160;old_locus_tag=C9F05_15585
NZ_PYKE01000231.1	Protein Homology	CDS	22859	23566	.	-	0	ID=cds-WP_135370427.1;Parent=gene-C9F05_RS15160;Dbxref=GenBank:WP_135370427.1;Name=WP_135370427.1;gbkey=CDS;gene=stjC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463429.1;locus_tag=C9F05_RS15160;product=fimbrial biogenesis chaperone StjC;protein_id=WP_135370427.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	23644	24333	.	-	.	ID=gene-C9F05_RS15165;Name=C9F05_RS15165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15165;old_locus_tag=C9F05_15590
NZ_PYKE01000231.1	Protein Homology	CDS	23644	24333	.	-	0	ID=cds-WP_000722275.1;Parent=gene-C9F05_RS15165;Dbxref=GenBank:WP_000722275.1;Name=WP_000722275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463430.1;locus_tag=C9F05_RS15165;product=DUF1120 domain-containing protein;protein_id=WP_000722275.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	24381	25070	.	-	.	ID=gene-C9F05_RS15170;Name=C9F05_RS15170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15170;old_locus_tag=C9F05_15595
NZ_PYKE01000231.1	Protein Homology	CDS	24381	25070	.	-	0	ID=cds-WP_080181055.1;Parent=gene-C9F05_RS15170;Dbxref=GenBank:WP_080181055.1;Name=WP_080181055.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463431.1;locus_tag=C9F05_RS15170;product=DUF1120 domain-containing protein;protein_id=WP_080181055.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	25383	26399	.	-	.	ID=gene-C9F05_RS23585;Name=lplA;gbkey=Gene;gene=lplA;gene_biotype=protein_coding;locus_tag=C9F05_RS23585;old_locus_tag=C9F05_15600
NZ_PYKE01000231.1	Protein Homology	CDS	25383	26399	.	-	0	ID=cds-WP_135400643.1;Parent=gene-C9F05_RS23585;Dbxref=GenBank:WP_135400643.1;Name=WP_135400643.1;gbkey=CDS;gene=lplA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463432.1;locus_tag=C9F05_RS23585;product=lipoate--protein ligase LplA;protein_id=WP_135400643.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	26433	27077	.	-	.	ID=gene-C9F05_RS23590;Name=C9F05_RS23590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23590;old_locus_tag=C9F05_15605
NZ_PYKE01000231.1	Protein Homology	CDS	26433	27077	.	-	0	ID=cds-WP_000090067.1;Parent=gene-C9F05_RS23590;Dbxref=GenBank:WP_000090067.1;Name=WP_000090067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463433.2;locus_tag=C9F05_RS23590;product=YtjB family periplasmic protein;protein_id=WP_000090067.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	27194	28162	.	+	.	ID=gene-C9F05_RS15185;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=C9F05_RS15185;old_locus_tag=C9F05_15615
NZ_PYKE01000231.1	Protein Homology	CDS	27194	28162	.	+	0	ID=cds-WP_001132983.1;Parent=gene-C9F05_RS15185;Dbxref=GenBank:WP_001132983.1;Name=WP_001132983.1;Ontology_term=GO:0006564,GO:0036424;gbkey=CDS;gene=serB;go_function=L-phosphoserine phosphatase activity|0036424||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463434.1;locus_tag=C9F05_RS15185;product=phosphoserine phosphatase;protein_id=WP_001132983.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	28246	29628	.	+	.	ID=gene-C9F05_RS15190;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=C9F05_RS15190;old_locus_tag=C9F05_15620
NZ_PYKE01000231.1	Protein Homology	CDS	28246	29628	.	+	0	ID=cds-WP_001029710.1;Parent=gene-C9F05_RS15190;Dbxref=GenBank:WP_001029710.1;Name=WP_001029710.1;Ontology_term=GO:0006281,GO:0003684,GO:0005524;gbkey=CDS;gene=radA;go_function=damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001399683.1;locus_tag=C9F05_RS15190;product=DNA repair protein RadA;protein_id=WP_001029710.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	29779	31011	.	+	.	ID=gene-C9F05_RS15195;Name=nadR;gbkey=Gene;gene=nadR;gene_biotype=protein_coding;locus_tag=C9F05_RS15195;old_locus_tag=C9F05_15625
NZ_PYKE01000231.1	Protein Homology	CDS	29779	31011	.	+	0	ID=cds-WP_001519486.1;Parent=gene-C9F05_RS15195;Dbxref=GenBank:WP_001519486.1;Name=WP_001519486.1;Ontology_term=GO:0009058,GO:0000309,GO:0003677,GO:0050262;gbkey=CDS;gene=nadR;go_function=nicotinamide-nucleotide adenylyltransferase activity|0000309||IEA,DNA binding|0003677||IEA,ribosylnicotinamide kinase activity|0050262||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463436.5;locus_tag=C9F05_RS15195;product=multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR;protein_id=WP_001519486.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	31129	32796	.	-	.	ID=gene-C9F05_RS15200;Name=ettA;gbkey=Gene;gene=ettA;gene_biotype=protein_coding;locus_tag=C9F05_RS15200;old_locus_tag=C9F05_15630
NZ_PYKE01000231.1	Protein Homology	CDS	31129	32796	.	-	0	ID=cds-WP_000046770.1;Parent=gene-C9F05_RS15200;Dbxref=GenBank:WP_000046770.1;Name=WP_000046770.1;Ontology_term=GO:0045900,GO:0005524;gbkey=CDS;gene=ettA;go_function=ATP binding|0005524||IEA;go_process=negative regulation of translational elongation|0045900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017145039.1;locus_tag=C9F05_RS15200;product=energy-dependent translational throttle protein EttA;protein_id=WP_000046770.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	32972	34942	.	+	.	ID=gene-C9F05_RS15205;Name=sltY;gbkey=Gene;gene=sltY;gene_biotype=protein_coding;locus_tag=C9F05_RS15205;old_locus_tag=C9F05_15640
NZ_PYKE01000231.1	Protein Homology	CDS	32972	34942	.	+	0	ID=cds-WP_243771333.1;Parent=gene-C9F05_RS15205;Dbxref=GenBank:WP_243771333.1;Name=WP_243771333.1;Ontology_term=GO:0000270,GO:0004553,GO:0008933,GO:0016020,GO:0042597;gbkey=CDS;gene=sltY;go_component=membrane|0016020||IEA,periplasmic space|0042597||IEA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016155637.1;locus_tag=C9F05_RS15205;product=murein transglycosylase;protein_id=WP_243771333.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	35000	35326	.	+	.	ID=gene-C9F05_RS15210;Name=trpR;gbkey=Gene;gene=trpR;gene_biotype=protein_coding;locus_tag=C9F05_RS15210;old_locus_tag=C9F05_15645
NZ_PYKE01000231.1	Protein Homology	CDS	35000	35326	.	+	0	ID=cds-WP_000192003.1;Parent=gene-C9F05_RS15210;Dbxref=GenBank:WP_000192003.1;Name=WP_000192003.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=trpR;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463439.1;locus_tag=C9F05_RS15210;product=trp operon repressor;protein_id=WP_000192003.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	35428	35943	.	-	.	ID=gene-C9F05_RS15215;Name=yjjX;gbkey=Gene;gene=yjjX;gene_biotype=protein_coding;locus_tag=C9F05_RS15215;old_locus_tag=C9F05_15650
NZ_PYKE01000231.1	Protein Homology	CDS	35428	35943	.	-	0	ID=cds-WP_000554311.1;Parent=gene-C9F05_RS15215;Dbxref=GenBank:WP_000554311.1;Name=WP_000554311.1;gbkey=CDS;gene=yjjX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463440.1;locus_tag=C9F05_RS15215;product=inosine/xanthosine triphosphatase;protein_id=WP_000554311.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	35992	36639	.	+	.	ID=gene-C9F05_RS15220;Name=gpmB;gbkey=Gene;gene=gpmB;gene_biotype=protein_coding;locus_tag=C9F05_RS15220;old_locus_tag=C9F05_15655
NZ_PYKE01000231.1	Protein Homology	CDS	35992	36639	.	+	0	ID=cds-WP_000942363.1;Parent=gene-C9F05_RS15220;Dbxref=GenBank:WP_000942363.1;Name=WP_000942363.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmB;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463441.1;locus_tag=C9F05_RS15220;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB;protein_id=WP_000942363.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	36636	37505	.	-	.	ID=gene-C9F05_RS15225;Name=robA;gbkey=Gene;gene=robA;gene_biotype=protein_coding;locus_tag=C9F05_RS15225;old_locus_tag=C9F05_15660
NZ_PYKE01000231.1	Protein Homology	CDS	36636	37505	.	-	0	ID=cds-WP_000371685.1;Parent=gene-C9F05_RS15225;Dbxref=GenBank:WP_000371685.1;Name=WP_000371685.1;gbkey=CDS;gene=robA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463442.1;locus_tag=C9F05_RS15225;product=MDR efflux pump AcrAB transcriptional activator RobA;protein_id=WP_000371685.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	37717	38190	.	+	.	ID=gene-C9F05_RS15230;Name=creA;gbkey=Gene;gene=creA;gene_biotype=protein_coding;locus_tag=C9F05_RS15230;old_locus_tag=C9F05_15665
NZ_PYKE01000231.1	Protein Homology	CDS	37717	38190	.	+	0	ID=cds-WP_000875811.1;Parent=gene-C9F05_RS15230;Dbxref=GenBank:WP_000875811.1;Name=WP_000875811.1;gbkey=CDS;gene=creA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463443.1;locus_tag=C9F05_RS15230;product=protein CreA;protein_id=WP_000875811.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	38203	38892	.	+	.	ID=gene-C9F05_RS15235;Name=creB;gbkey=Gene;gene=creB;gene_biotype=protein_coding;locus_tag=C9F05_RS15235;old_locus_tag=C9F05_15670
NZ_PYKE01000231.1	Protein Homology	CDS	38203	38892	.	+	0	ID=cds-WP_001187049.1;Parent=gene-C9F05_RS15235;Dbxref=GenBank:WP_001187049.1;Name=WP_001187049.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=creB;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463444.1;locus_tag=C9F05_RS15235;product=two-component system response regulator CreB;protein_id=WP_001187049.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	38892	40316	.	+	.	ID=gene-C9F05_RS15240;Name=creC;gbkey=Gene;gene=creC;gene_biotype=protein_coding;locus_tag=C9F05_RS15240;old_locus_tag=C9F05_15675
NZ_PYKE01000231.1	Protein Homology	CDS	38892	40316	.	+	0	ID=cds-WP_135370430.1;Parent=gene-C9F05_RS15240;Dbxref=GenBank:WP_135370430.1;Name=WP_135370430.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=creC;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463445.1;locus_tag=C9F05_RS15240;product=two-component system sensor histidine kinase CreC;protein_id=WP_135370430.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	40374	41723	.	+	.	ID=gene-C9F05_RS15245;Name=creD;gbkey=Gene;gene=creD;gene_biotype=protein_coding;locus_tag=C9F05_RS15245;old_locus_tag=C9F05_15680
NZ_PYKE01000231.1	Protein Homology	CDS	40374	41723	.	+	0	ID=cds-WP_000920384.1;Parent=gene-C9F05_RS15245;Dbxref=GenBank:WP_000920384.1;Name=WP_000920384.1;gbkey=CDS;gene=creD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463446.1;locus_tag=C9F05_RS15245;product=cell envelope integrity protein CreD;protein_id=WP_000920384.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	41781	42866	.	-	.	ID=gene-C9F05_RS15250;Name=sthE;gbkey=Gene;gene=sthE;gene_biotype=protein_coding;locus_tag=C9F05_RS15250;old_locus_tag=C9F05_15685
NZ_PYKE01000231.1	Protein Homology	CDS	41781	42866	.	-	0	ID=cds-WP_023250198.1;Parent=gene-C9F05_RS15250;Dbxref=GenBank:WP_023250198.1;Name=WP_023250198.1;gbkey=CDS;gene=sthE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463447.1;locus_tag=C9F05_RS15250;product=fimbrial major subunit SthE;protein_id=WP_023250198.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	42907	43464	.	-	.	ID=gene-C9F05_RS15255;Name=C9F05_RS15255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15255;old_locus_tag=C9F05_15690
NZ_PYKE01000231.1	Protein Homology	CDS	42907	43464	.	-	0	ID=cds-WP_094889037.1;Parent=gene-C9F05_RS15255;Dbxref=GenBank:WP_094889037.1;Name=WP_094889037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463448.1;locus_tag=C9F05_RS15255;product=fimbrial protein;protein_id=WP_094889037.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	43482	46019	.	-	.	ID=gene-C9F05_RS15260;Name=C9F05_RS15260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15260;old_locus_tag=C9F05_15695
NZ_PYKE01000231.1	Protein Homology	CDS	43482	46019	.	-	0	ID=cds-WP_001160707.1;Parent=gene-C9F05_RS15260;Dbxref=GenBank:WP_001160707.1;Name=WP_001160707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463449.1;locus_tag=C9F05_RS15260;product=fimbrial outer membrane usher protein;protein_id=WP_001160707.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	46065	46748	.	-	.	ID=gene-C9F05_RS15265;Name=sthA;gbkey=Gene;gene=sthA;gene_biotype=protein_coding;locus_tag=C9F05_RS15265;old_locus_tag=C9F05_15700
NZ_PYKE01000231.1	Protein Homology	CDS	46065	46748	.	-	0	ID=cds-WP_000680512.1;Parent=gene-C9F05_RS15265;Dbxref=GenBank:WP_000680512.1;Name=WP_000680512.1;gbkey=CDS;gene=sthA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463450.1;locus_tag=C9F05_RS15265;product=fimbrial biogenesis chaperone SthA;protein_id=WP_000680512.1;transl_table=11
NZ_PYKE01000231.1	RefSeq	gene	46818	47363	.	-	.	ID=gene-C9F05_RS15270;Name=C9F05_RS15270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15270;old_locus_tag=C9F05_15705
NZ_PYKE01000231.1	Protein Homology	CDS	46818	47363	.	-	0	ID=cds-WP_000482235.1;Parent=gene-C9F05_RS15270;Dbxref=GenBank:WP_000482235.1;Name=WP_000482235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463451.1;locus_tag=C9F05_RS15270;product=fimbrial protein;protein_id=WP_000482235.1;transl_table=11
##sequence-region NZ_PYKE01000146.1 1 10782
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000146.1	RefSeq	region	1	10782	.	+	.	ID=NZ_PYKE01000146.1:1..10782;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000146.1	RefSeq	gene	253	468	.	+	.	ID=gene-C9F05_RS10560;Name=C9F05_RS10560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10560;old_locus_tag=C9F05_10825
NZ_PYKE01000146.1	Protein Homology	CDS	253	468	.	+	0	ID=cds-WP_135370250.1;Parent=gene-C9F05_RS10560;Dbxref=GenBank:WP_135370250.1;Name=WP_135370250.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461671.1;locus_tag=C9F05_RS10560;product=AlpA family transcriptional regulator;protein_id=WP_135370250.1;transl_table=11
NZ_PYKE01000146.1	RefSeq	pseudogene	504	722	.	+	.	ID=gene-C9F05_RS10565;Name=C9F05_RS10565;end_range=722,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS10565;old_locus_tag=C9F05_10830;partial=true;pseudo=true
NZ_PYKE01000146.1	Protein Homology	CDS	504	722	.	+	0	ID=cds-C9F05_RS10565;Parent=gene-C9F05_RS10565;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=722,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461672.1;locus_tag=C9F05_RS10565;partial=true;product=DUF927 domain-containing protein;pseudo=true;transl_table=11
NZ_PYKE01000146.1	RefSeq	gene	1303	2418	.	+	.	ID=gene-C9F05_RS10580;Name=iroB;gbkey=Gene;gene=iroB;gene_biotype=protein_coding;locus_tag=C9F05_RS10580;old_locus_tag=C9F05_10845
NZ_PYKE01000146.1	Protein Homology	CDS	1303	2418	.	+	0	ID=cds-WP_135370253.1;Parent=gene-C9F05_RS10580;Dbxref=GenBank:WP_135370253.1;Name=WP_135370253.1;gbkey=CDS;gene=iroB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461700.1;locus_tag=C9F05_RS10580;product=salmochelin biosynthesis C-glycosyltransferase IroB;protein_id=WP_135370253.1;transl_table=11
NZ_PYKE01000146.1	RefSeq	gene	2499	6155	.	+	.	ID=gene-C9F05_RS10585;Name=iroC;gbkey=Gene;gene=iroC;gene_biotype=protein_coding;locus_tag=C9F05_RS10585;old_locus_tag=C9F05_10850
NZ_PYKE01000146.1	Protein Homology	CDS	2499	6155	.	+	0	ID=cds-WP_135370254.1;Parent=gene-C9F05_RS10585;Dbxref=GenBank:WP_135370254.1;Name=WP_135370254.1;gbkey=CDS;gene=iroC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461701.1;locus_tag=C9F05_RS10585;product=salmochelin/enterobactin export ABC transporter IroC;protein_id=WP_135370254.1;transl_table=11
NZ_PYKE01000146.1	RefSeq	gene	6265	7509	.	+	.	ID=gene-C9F05_RS10590;Name=C9F05_RS10590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10590;old_locus_tag=C9F05_10855
NZ_PYKE01000146.1	Protein Homology	CDS	6265	7509	.	+	0	ID=cds-WP_135370255.1;Parent=gene-C9F05_RS10590;Dbxref=GenBank:WP_135370255.1;Name=WP_135370255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461702.1;locus_tag=C9F05_RS10590;product=esterase family protein;protein_id=WP_135370255.1;transl_table=11
NZ_PYKE01000146.1	RefSeq	gene	7541	8476	.	+	.	ID=gene-C9F05_RS10595;Name=C9F05_RS10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10595;old_locus_tag=C9F05_10860
NZ_PYKE01000146.1	Protein Homology	CDS	7541	8476	.	+	0	ID=cds-WP_135370256.1;Parent=gene-C9F05_RS10595;Dbxref=GenBank:WP_135370256.1;Name=WP_135370256.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461703.1;locus_tag=C9F05_RS10595;product=alpha/beta hydrolase;protein_id=WP_135370256.1;transl_table=11
NZ_PYKE01000146.1	RefSeq	gene	8518	10692	.	-	.	ID=gene-C9F05_RS10600;Name=C9F05_RS10600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10600;old_locus_tag=C9F05_10865
NZ_PYKE01000146.1	Protein Homology	CDS	8518	10692	.	-	0	ID=cds-WP_303396430.1;Parent=gene-C9F05_RS10600;Dbxref=GenBank:WP_303396430.1;Name=WP_303396430.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001542215.1;locus_tag=C9F05_RS10600;product=TonB-dependent siderophore receptor;protein_id=WP_303396430.1;transl_table=11
##sequence-region NZ_PYKE01000068.1 1 10735
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000068.1	RefSeq	region	1	10735	.	+	.	ID=NZ_PYKE01000068.1:1..10735;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000068.1	RefSeq	gene	616	1074	.	+	.	ID=gene-C9F05_RS04380;Name=mraZ;gbkey=Gene;gene=mraZ;gene_biotype=protein_coding;locus_tag=C9F05_RS04380;old_locus_tag=C9F05_04445
NZ_PYKE01000068.1	Protein Homology	CDS	616	1074	.	+	0	ID=cds-WP_000488294.1;Parent=gene-C9F05_RS04380;Dbxref=GenBank:WP_000488294.1;Name=WP_000488294.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=mraZ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020325403.1;locus_tag=C9F05_RS04380;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=WP_000488294.1;transl_table=11
NZ_PYKE01000068.1	RefSeq	gene	1076	2017	.	+	.	ID=gene-C9F05_RS04385;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=C9F05_RS04385;old_locus_tag=C9F05_04450
NZ_PYKE01000068.1	Protein Homology	CDS	1076	2017	.	+	0	ID=cds-WP_000970433.1;Parent=gene-C9F05_RS04385;Dbxref=GenBank:WP_000970433.1;Name=WP_000970433.1;Ontology_term=GO:0000154,GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;go_process=rRNA modification|0000154||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124563.1;locus_tag=C9F05_RS04385;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=WP_000970433.1;transl_table=11
NZ_PYKE01000068.1	RefSeq	gene	2014	2379	.	+	.	ID=gene-C9F05_RS04390;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;locus_tag=C9F05_RS04390;old_locus_tag=C9F05_04455
NZ_PYKE01000068.1	Protein Homology	CDS	2014	2379	.	+	0	ID=cds-WP_000625651.1;Parent=gene-C9F05_RS04390;Dbxref=GenBank:WP_000625651.1;Name=WP_000625651.1;gbkey=CDS;gene=ftsL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000625658.1;locus_tag=C9F05_RS04390;product=cell division protein FtsL;protein_id=WP_000625651.1;transl_table=11
NZ_PYKE01000068.1	RefSeq	gene	2395	4161	.	+	.	ID=gene-C9F05_RS04395;Name=ftsI;gbkey=Gene;gene=ftsI;gene_biotype=protein_coding;locus_tag=C9F05_RS04395;old_locus_tag=C9F05_04460
NZ_PYKE01000068.1	Protein Homology	CDS	2395	4161	.	+	0	ID=cds-WP_000642235.1;Parent=gene-C9F05_RS04395;Dbxref=GenBank:WP_000642235.1;Name=WP_000642235.1;gbkey=CDS;gene=ftsI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000642204.1;locus_tag=C9F05_RS04395;product=peptidoglycan glycosyltransferase FtsI;protein_id=WP_000642235.1;transl_table=11
NZ_PYKE01000068.1	RefSeq	gene	4148	5635	.	+	.	ID=gene-C9F05_RS04400;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=C9F05_RS04400;old_locus_tag=C9F05_04465
NZ_PYKE01000068.1	Protein Homology	CDS	4148	5635	.	+	0	ID=cds-WP_001748924.1;Parent=gene-C9F05_RS04400;Dbxref=GenBank:WP_001748924.1;Name=WP_001748924.1;Ontology_term=GO:0008360,GO:0009058,GO:0051301,GO:0005524,GO:0016881;gbkey=CDS;gene=murE;go_function=ATP binding|0005524||IEA,acid-amino acid ligase activity|0016881||IEA;go_process=regulation of cell shape|0008360||IEA,biosynthetic process|0009058||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459128.1;locus_tag=C9F05_RS04400;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=WP_001748924.1;transl_table=11
NZ_PYKE01000068.1	RefSeq	gene	5632	6990	.	+	.	ID=gene-C9F05_RS04405;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=C9F05_RS04405;old_locus_tag=C9F05_04470
NZ_PYKE01000068.1	Protein Homology	CDS	5632	6990	.	+	0	ID=cds-WP_135370050.1;Parent=gene-C9F05_RS04405;Dbxref=GenBank:WP_135370050.1;Name=WP_135370050.1;Ontology_term=GO:0009058,GO:0071555,GO:0005524,GO:0047480;gbkey=CDS;gene=murF;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=biosynthetic process|0009058||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459129.1;locus_tag=C9F05_RS04405;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_135370050.1;transl_table=11
NZ_PYKE01000068.1	RefSeq	gene	6984	8066	.	+	.	ID=gene-C9F05_RS04410;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=C9F05_RS04410;old_locus_tag=C9F05_04475
NZ_PYKE01000068.1	Protein Homology	CDS	6984	8066	.	+	0	ID=cds-WP_000964138.1;Parent=gene-C9F05_RS04410;Dbxref=GenBank:WP_000964138.1;Name=WP_000964138.1;Ontology_term=GO:0009252,GO:0008963,GO:0016020;gbkey=CDS;gene=mraY;go_component=membrane|0016020||IEA;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124610.1;locus_tag=C9F05_RS04410;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_000964138.1;transl_table=11
NZ_PYKE01000068.1	RefSeq	gene	8069	9385	.	+	.	ID=gene-C9F05_RS04415;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=C9F05_RS04415;old_locus_tag=C9F05_04480
NZ_PYKE01000068.1	Protein Homology	CDS	8069	9385	.	+	0	ID=cds-WP_000796445.1;Parent=gene-C9F05_RS04415;Dbxref=GenBank:WP_000796445.1;Name=WP_000796445.1;Ontology_term=GO:0008360,GO:0009252,GO:0051301,GO:0005524,GO:0008764,GO:0005737;gbkey=CDS;gene=murD;go_component=cytoplasm|0005737||IEA;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124612.1;locus_tag=C9F05_RS04415;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=WP_000796445.1;transl_table=11
NZ_PYKE01000068.1	RefSeq	gene	9385	10629	.	+	.	ID=gene-C9F05_RS04420;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=C9F05_RS04420;old_locus_tag=C9F05_04485
NZ_PYKE01000068.1	Protein Homology	CDS	9385	10629	.	+	0	ID=cds-WP_001239803.1;Parent=gene-C9F05_RS04420;Dbxref=GenBank:WP_001239803.1;Name=WP_001239803.1;Ontology_term=GO:0051301;gbkey=CDS;gene=ftsW;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459132.1;locus_tag=C9F05_RS04420;product=cell division protein FtsW;protein_id=WP_001239803.1;transl_table=11
NZ_PYKE01000068.1	RefSeq	gene	10626	10735	.	+	.	ID=gene-C9F05_RS04425;Name=C9F05_RS04425;end_range=10735,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04425;old_locus_tag=C9F05_04490;partial=true
NZ_PYKE01000068.1	Protein Homology	CDS	10626	10735	.	+	0	ID=cds-WP_176207109.1;Parent=gene-C9F05_RS04425;Dbxref=GenBank:WP_176207109.1;Name=WP_176207109.1;Ontology_term=GO:0005975,GO:0016758;end_range=10735,.;gbkey=CDS;go_function=hexosyltransferase activity|0016758||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459133.1;locus_tag=C9F05_RS04425;partial=true;product=glycosyltransferase;protein_id=WP_176207109.1;transl_table=11
##sequence-region NZ_PYKE01000279.1 1 10716
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000279.1	RefSeq	region	1	10716	.	+	.	ID=NZ_PYKE01000279.1:1..10716;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000279.1	RefSeq	gene	392	1576	.	-	.	ID=gene-C9F05_RS18600;Name=C9F05_RS18600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18600;old_locus_tag=C9F05_19135
NZ_PYKE01000279.1	Protein Homology	CDS	392	1576	.	-	0	ID=cds-WP_000165758.1;Parent=gene-C9F05_RS18600;Dbxref=GenBank:WP_000165758.1;Name=WP_000165758.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461738.1;locus_tag=C9F05_RS18600;product=MFS transporter;protein_id=WP_000165758.1;transl_table=11
NZ_PYKE01000279.1	RefSeq	gene	1741	2736	.	-	.	ID=gene-C9F05_RS18605;Name=proX;gbkey=Gene;gene=proX;gene_biotype=protein_coding;locus_tag=C9F05_RS18605;old_locus_tag=C9F05_19140
NZ_PYKE01000279.1	Protein Homology	CDS	1741	2736	.	-	0	ID=cds-WP_135370533.1;Parent=gene-C9F05_RS18605;Dbxref=GenBank:WP_135370533.1;Name=WP_135370533.1;Ontology_term=GO:0055085,GO:0022857,GO:0043190;gbkey=CDS;gene=proX;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461737.1;locus_tag=C9F05_RS18605;product=glycine betaine/L-proline ABC transporter substrate-binding protein ProX;protein_id=WP_135370533.1;transl_table=11
NZ_PYKE01000279.1	RefSeq	gene	2806	3870	.	-	.	ID=gene-C9F05_RS18610;Name=proW;gbkey=Gene;gene=proW;gene_biotype=protein_coding;locus_tag=C9F05_RS18610;old_locus_tag=C9F05_19145
NZ_PYKE01000279.1	Protein Homology	CDS	2806	3870	.	-	0	ID=cds-WP_000775015.1;Parent=gene-C9F05_RS18610;Dbxref=GenBank:WP_000775015.1;Name=WP_000775015.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=proW;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461736.1;locus_tag=C9F05_RS18610;product=glycine betaine/L-proline ABC transporter permease ProW;protein_id=WP_000775015.1;transl_table=11
NZ_PYKE01000279.1	RefSeq	gene	3863	5065	.	-	.	ID=gene-C9F05_RS18615;Name=proV;gbkey=Gene;gene=proV;gene_biotype=protein_coding;locus_tag=C9F05_RS18615;old_locus_tag=C9F05_19150
NZ_PYKE01000279.1	Protein Homology	CDS	3863	5065	.	-	0	ID=cds-WP_000985529.1;Parent=gene-C9F05_RS18615;Dbxref=GenBank:WP_000985529.1;Name=WP_000985529.1;Ontology_term=GO:0031460,GO:0005524;gbkey=CDS;gene=proV;go_function=ATP binding|0005524||IEA;go_process=glycine betaine transport|0031460||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461735.1;locus_tag=C9F05_RS18615;product=glycine betaine/L-proline ABC transporter ATP-binding protein ProV;protein_id=WP_000985529.1;transl_table=11
NZ_PYKE01000279.1	RefSeq	gene	5420	6379	.	-	.	ID=gene-C9F05_RS18625;Name=nrdF;gbkey=Gene;gene=nrdF;gene_biotype=protein_coding;locus_tag=C9F05_RS18625;old_locus_tag=C9F05_19160
NZ_PYKE01000279.1	Protein Homology	CDS	5420	6379	.	-	0	ID=cds-WP_000777903.1;Parent=gene-C9F05_RS18625;Dbxref=GenBank:WP_000777903.1;Name=WP_000777903.1;Ontology_term=GO:0009263,GO:0004748,GO:0005971;gbkey=CDS;gene=nrdF;go_component=ribonucleoside-diphosphate reductase complex|0005971||IEA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461734.1;locus_tag=C9F05_RS18625;product=class 1b ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_000777903.1;transl_table=11
NZ_PYKE01000279.1	RefSeq	gene	6390	8507	.	-	.	ID=gene-C9F05_RS18630;Name=nrdE;gbkey=Gene;gene=nrdE;gene_biotype=protein_coding;locus_tag=C9F05_RS18630;old_locus_tag=C9F05_19165
NZ_PYKE01000279.1	Protein Homology	CDS	6390	8507	.	-	0	ID=cds-WP_440591218.1;Parent=gene-C9F05_RS18630;Dbxref=GenBank:WP_440591218.1;Name=WP_440591218.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdE;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001526351.1;locus_tag=C9F05_RS18630;product=class 1b ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_440591218.1;transl_table=11
NZ_PYKE01000279.1	RefSeq	gene	8507	8917	.	-	.	ID=gene-C9F05_RS18635;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;locus_tag=C9F05_RS18635;old_locus_tag=C9F05_19170
NZ_PYKE01000279.1	Protein Homology	CDS	8507	8917	.	-	0	ID=cds-WP_135370535.1;Parent=gene-C9F05_RS18635;Dbxref=GenBank:WP_135370535.1;Name=WP_135370535.1;Ontology_term=GO:0009263,GO:0036211,GO:0010181;gbkey=CDS;gene=nrdI;go_function=FMN binding|0010181||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA,protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461732.1;locus_tag=C9F05_RS18635;product=class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI;protein_id=WP_135370535.1;transl_table=11
NZ_PYKE01000279.1	RefSeq	gene	8914	9159	.	-	.	ID=gene-C9F05_RS18640;Name=nrdH;gbkey=Gene;gene=nrdH;gene_biotype=protein_coding;locus_tag=C9F05_RS18640;old_locus_tag=C9F05_19175
NZ_PYKE01000279.1	Protein Homology	CDS	8914	9159	.	-	0	ID=cds-WP_000028870.1;Parent=gene-C9F05_RS18640;Dbxref=GenBank:WP_000028870.1;Name=WP_000028870.1;gbkey=CDS;gene=nrdH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461731.1;locus_tag=C9F05_RS18640;product=glutaredoxin-like protein NrdH;protein_id=WP_000028870.1;transl_table=11
NZ_PYKE01000279.1	RefSeq	gene	9431	9862	.	-	.	ID=gene-C9F05_RS18650;Name=C9F05_RS18650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18650;old_locus_tag=C9F05_19185
NZ_PYKE01000279.1	Protein Homology	CDS	9431	9862	.	-	0	ID=cds-WP_000209816.1;Parent=gene-C9F05_RS18650;Dbxref=GenBank:WP_000209816.1;Name=WP_000209816.1;Ontology_term=GO:0051920;gbkey=CDS;go_function=peroxiredoxin activity|0051920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461730.1;locus_tag=C9F05_RS18650;product=carboxymuconolactone decarboxylase family protein;protein_id=WP_000209816.1;transl_table=11
NZ_PYKE01000279.1	RefSeq	gene	9951	10716	.	+	.	ID=gene-C9F05_RS18655;Name=C9F05_RS18655;end_range=10716,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18655;old_locus_tag=C9F05_19190;partial=true
NZ_PYKE01000279.1	Protein Homology	CDS	9951	10716	.	+	0	ID=cds-WP_135370536.1;Parent=gene-C9F05_RS18655;Dbxref=GenBank:WP_135370536.1;Name=WP_135370536.1;Ontology_term=GO:0030170;end_range=10716,.;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461729.1;locus_tag=C9F05_RS18655;partial=true;product=aminotransferase-like domain-containing protein;protein_id=WP_135370536.1;transl_table=11
##sequence-region NZ_PYKE01000042.1 1 10693
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000042.1	RefSeq	region	1	10693	.	+	.	ID=NZ_PYKE01000042.1:1..10693;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000042.1	RefSeq	gene	308	1939	.	+	.	ID=gene-C9F05_RS02965;Name=C9F05_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02965;old_locus_tag=C9F05_03015
NZ_PYKE01000042.1	Protein Homology	CDS	308	1939	.	+	0	ID=cds-WP_135370017.1;Parent=gene-C9F05_RS02965;Dbxref=GenBank:WP_135370017.1;Name=WP_135370017.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463169.1;locus_tag=C9F05_RS02965;product=sensor histidine kinase;protein_id=WP_135370017.1;transl_table=11
NZ_PYKE01000042.1	RefSeq	gene	1936	2655	.	+	.	ID=gene-C9F05_RS02970;Name=dcuR;gbkey=Gene;gene=dcuR;gene_biotype=protein_coding;locus_tag=C9F05_RS02970;old_locus_tag=C9F05_03020
NZ_PYKE01000042.1	Protein Homology	CDS	1936	2655	.	+	0	ID=cds-WP_000611307.1;Parent=gene-C9F05_RS02970;Dbxref=GenBank:WP_000611307.1;Name=WP_000611307.1;Ontology_term=GO:0000160,GO:0003700;gbkey=CDS;gene=dcuR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463168.1;locus_tag=C9F05_RS02970;product=two-component system response regulator DcuR;protein_id=WP_000611307.1;transl_table=11
NZ_PYKE01000042.1	RefSeq	gene	2972	3238	.	+	.	ID=gene-C9F05_RS02975;Name=C9F05_RS02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02975;old_locus_tag=C9F05_03025
NZ_PYKE01000042.1	Protein Homology	CDS	2972	3238	.	+	0	ID=cds-WP_001584204.1;Parent=gene-C9F05_RS02975;Dbxref=GenBank:WP_001584204.1;Name=WP_001584204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463167.1;locus_tag=C9F05_RS02975;product=hypothetical protein;protein_id=WP_001584204.1;transl_table=11
NZ_PYKE01000042.1	RefSeq	gene	3385	4725	.	+	.	ID=gene-C9F05_RS02980;Name=dcuB;gbkey=Gene;gene=dcuB;gene_biotype=protein_coding;locus_tag=C9F05_RS02980;old_locus_tag=C9F05_03030
NZ_PYKE01000042.1	Protein Homology	CDS	3385	4725	.	+	0	ID=cds-WP_000899149.1;Parent=gene-C9F05_RS02980;Dbxref=GenBank:WP_000899149.1;Name=WP_000899149.1;gbkey=CDS;gene=dcuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463166.1;locus_tag=C9F05_RS02980;product=anaerobic C4-dicarboxylate transporter DcuB;protein_id=WP_000899149.1;transl_table=11
NZ_PYKE01000042.1	RefSeq	gene	4821	6467	.	+	.	ID=gene-C9F05_RS02985;Name=fumA;gbkey=Gene;gene=fumA;gene_biotype=protein_coding;locus_tag=C9F05_RS02985;old_locus_tag=C9F05_03035
NZ_PYKE01000042.1	Protein Homology	CDS	4821	6467	.	+	0	ID=cds-WP_000037190.1;Parent=gene-C9F05_RS02985;Dbxref=GenBank:WP_000037190.1;Name=WP_000037190.1;gbkey=CDS;gene=fumA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463165.1;locus_tag=C9F05_RS02985;product=class I fumarate hydratase FumA;protein_id=WP_000037190.1;transl_table=11
NZ_PYKE01000042.1	RefSeq	gene	6565	7995	.	-	.	ID=gene-C9F05_RS02990;Name=melB;gbkey=Gene;gene=melB;gene_biotype=protein_coding;locus_tag=C9F05_RS02990;old_locus_tag=C9F05_03040
NZ_PYKE01000042.1	Protein Homology	CDS	6565	7995	.	-	0	ID=cds-WP_000028070.1;Parent=gene-C9F05_RS02990;Dbxref=GenBank:WP_000028070.1;Name=WP_000028070.1;Ontology_term=GO:0006814,GO:0008643,GO:0015293,GO:0022857,GO:0016020;gbkey=CDS;gene=melB;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA,transmembrane transporter activity|0022857||IEA;go_process=sodium ion transport|0006814||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463164.1;locus_tag=C9F05_RS02990;product=melibiose:sodium transporter MelB;protein_id=WP_000028070.1;transl_table=11
NZ_PYKE01000042.1	RefSeq	gene	8079	9434	.	-	.	ID=gene-C9F05_RS02995;Name=melA;gbkey=Gene;gene=melA;gene_biotype=protein_coding;locus_tag=C9F05_RS02995;old_locus_tag=C9F05_03045
NZ_PYKE01000042.1	Protein Homology	CDS	8079	9434	.	-	0	ID=cds-WP_020437593.1;Parent=gene-C9F05_RS02995;Dbxref=GenBank:WP_020437593.1;Name=WP_020437593.1;gbkey=CDS;gene=melA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463163.1;locus_tag=C9F05_RS02995;product=alpha-galactosidase;protein_id=WP_020437593.1;transl_table=11
NZ_PYKE01000042.1	RefSeq	gene	9703	10635	.	+	.	ID=gene-C9F05_RS03000;Name=melR;gbkey=Gene;gene=melR;gene_biotype=protein_coding;locus_tag=C9F05_RS03000;old_locus_tag=C9F05_03050
NZ_PYKE01000042.1	Protein Homology	CDS	9703	10635	.	+	0	ID=cds-WP_071692107.1;Parent=gene-C9F05_RS03000;Dbxref=GenBank:WP_071692107.1;Name=WP_071692107.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=melR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463162.1;locus_tag=C9F05_RS03000;product=transcriptional regulator MelR;protein_id=WP_071692107.1;transl_table=11
##sequence-region NZ_PYKE01000006.1 1 10515
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000006.1	RefSeq	region	1	10515	.	+	.	ID=NZ_PYKE01000006.1:1..10515;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000006.1	RefSeq	gene	65	523	.	+	.	ID=gene-C9F05_RS00310;Name=C9F05_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00310;old_locus_tag=C9F05_00310
NZ_PYKE01000006.1	Protein Homology	CDS	65	523	.	+	0	ID=cds-WP_135369912.1;Parent=gene-C9F05_RS00310;Dbxref=GenBank:WP_135369912.1;Name=WP_135369912.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462839.1;locus_tag=C9F05_RS00310;product=hypothetical protein;protein_id=WP_135369912.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	539	919	.	+	.	ID=gene-C9F05_RS00315;Name=yigF;gbkey=Gene;gene=yigF;gene_biotype=protein_coding;locus_tag=C9F05_RS00315;old_locus_tag=C9F05_00315
NZ_PYKE01000006.1	Protein Homology	CDS	539	919	.	+	0	ID=cds-WP_000356594.1;Parent=gene-C9F05_RS00315;Dbxref=GenBank:WP_000356594.1;Name=WP_000356594.1;gbkey=CDS;gene=yigF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462838.1;locus_tag=C9F05_RS00315;product=inner membrane protein YigF;protein_id=WP_000356594.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	968	1918	.	-	.	ID=gene-C9F05_RS00320;Name=corA;gbkey=Gene;gene=corA;gene_biotype=protein_coding;locus_tag=C9F05_RS00320;old_locus_tag=C9F05_00320
NZ_PYKE01000006.1	Protein Homology	CDS	968	1918	.	-	0	ID=cds-WP_000947139.1;Parent=gene-C9F05_RS00320;Dbxref=GenBank:WP_000947139.1;Name=WP_000947139.1;Ontology_term=GO:0006824,GO:0015693,GO:0015087,GO:0015095,GO:0016020;gbkey=CDS;gene=corA;go_component=membrane|0016020||IEA;go_function=cobalt ion transmembrane transporter activity|0015087||IEA,magnesium ion transmembrane transporter activity|0015095||IEA;go_process=cobalt ion transport|0006824||IEA,magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000947142.1;locus_tag=C9F05_RS00320;product=magnesium/cobalt transporter CorA;protein_id=WP_000947139.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	2074	2130	.	-	.	ID=gene-C9F05_RS23605;Name=ysgD;gbkey=Gene;gene=ysgD;gene_biotype=protein_coding;locus_tag=C9F05_RS23605
NZ_PYKE01000006.1	Protein Homology	CDS	2074	2130	.	-	0	ID=cds-WP_212723238.1;Parent=gene-C9F05_RS23605;Dbxref=GenBank:WP_212723238.1;Name=WP_212723238.1;gbkey=CDS;gene=ysgD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051213.1;locus_tag=C9F05_RS23605;product=YsgD/CorL family protein;protein_id=WP_212723238.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	2390	4552	.	-	.	ID=gene-C9F05_RS00330;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;gene_synonym=mutU,recL;locus_tag=C9F05_RS00330;old_locus_tag=C9F05_00330
NZ_PYKE01000006.1	Protein Homology	CDS	2390	4552	.	-	0	ID=cds-WP_023993646.1;Parent=gene-C9F05_RS00330;Dbxref=GenBank:WP_023993646.1;Name=WP_023993646.1;Ontology_term=GO:0006260,GO:0003677,GO:0003678,GO:0005524,GO:0016787;gbkey=CDS;gene=uvrD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462836.1;locus_tag=C9F05_RS00330;product=DNA helicase II;protein_id=WP_023993646.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	4688	5404	.	-	.	ID=gene-C9F05_RS00335;Name=yigB;gbkey=Gene;gene=yigB;gene_biotype=protein_coding;locus_tag=C9F05_RS00335;old_locus_tag=C9F05_00335
NZ_PYKE01000006.1	Protein Homology	CDS	4688	5404	.	-	0	ID=cds-WP_001213560.1;Parent=gene-C9F05_RS00335;Dbxref=GenBank:WP_001213560.1;Name=WP_001213560.1;gbkey=CDS;gene=yigB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462835.1;locus_tag=C9F05_RS00335;product=5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB;protein_id=WP_001213560.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	5404	6306	.	-	.	ID=gene-C9F05_RS00340;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=C9F05_RS00340;old_locus_tag=C9F05_00340
NZ_PYKE01000006.1	Protein Homology	CDS	5404	6306	.	-	0	ID=cds-WP_135369913.1;Parent=gene-C9F05_RS00340;Dbxref=GenBank:WP_135369913.1;Name=WP_135369913.1;Ontology_term=GO:0006310,GO:0007059,GO:0015074,GO:0051301,GO:0003677;gbkey=CDS;gene=xerC;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,chromosome segregation|0007059||IEA,DNA integration|0015074||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462834.1;locus_tag=C9F05_RS00340;product=tyrosine recombinase XerC;protein_id=WP_135369913.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	6303	7010	.	-	.	ID=gene-C9F05_RS00345;Name=C9F05_RS00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00345;old_locus_tag=C9F05_00345
NZ_PYKE01000006.1	Protein Homology	CDS	6303	7010	.	-	0	ID=cds-WP_000812763.1;Parent=gene-C9F05_RS00345;Dbxref=GenBank:WP_000812763.1;Name=WP_000812763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462833.1;locus_tag=C9F05_RS00345;product=DUF484 domain-containing protein;protein_id=WP_000812763.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	7007	7831	.	-	.	ID=gene-C9F05_RS00350;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=C9F05_RS00350;old_locus_tag=C9F05_00350
NZ_PYKE01000006.1	Protein Homology	CDS	7007	7831	.	-	0	ID=cds-WP_001160671.1;Parent=gene-C9F05_RS00350;Dbxref=GenBank:WP_001160671.1;Name=WP_001160671.1;Ontology_term=GO:0009089,GO:0008837;gbkey=CDS;gene=dapF;go_function=diaminopimelate epimerase activity|0008837||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133314.1;locus_tag=C9F05_RS00350;product=diaminopimelate epimerase;protein_id=WP_001160671.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	7868	8071	.	-	.	ID=gene-C9F05_RS00355;Name=lptM;gbkey=Gene;gene=lptM;gene_biotype=protein_coding;gene_synonym=yifL;locus_tag=C9F05_RS00355;old_locus_tag=C9F05_00355
NZ_PYKE01000006.1	Protein Homology	CDS	7868	8071	.	-	0	ID=cds-WP_000799903.1;Parent=gene-C9F05_RS00355;Dbxref=GenBank:WP_000799903.1;Name=WP_000799903.1;gbkey=CDS;gene=lptM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462831.1;locus_tag=C9F05_RS00355;product=LPS translocon maturation chaperone LptM;protein_id=WP_000799903.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	8257	8508	.	+	.	ID=gene-C9F05_RS23530;Name=C9F05_RS23530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23530;old_locus_tag=C9F05_00360
NZ_PYKE01000006.1	GeneMarkS-2+	CDS	8257	8508	.	+	0	ID=cds-WP_024145461.1;Parent=gene-C9F05_RS23530;Dbxref=GenBank:WP_024145461.1;Name=WP_024145461.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23530;product=hypothetical protein;protein_id=WP_024145461.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	pseudogene	8478	8779	.	+	.	ID=gene-C9F05_RS00360;Name=C9F05_RS00360;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS00360;old_locus_tag=C9F05_00365;partial=true;pseudo=true;start_range=.,8478
NZ_PYKE01000006.1	Protein Homology	CDS	8478	8779	.	+	0	ID=cds-C9F05_RS00360;Parent=gene-C9F05_RS00360;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001200019.1;locus_tag=C9F05_RS00360;partial=true;product=hypothetical protein;pseudo=true;start_range=.,8478;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	8767	9156	.	+	.	ID=gene-C9F05_RS00365;Name=C9F05_RS00365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00365;old_locus_tag=C9F05_00370
NZ_PYKE01000006.1	Protein Homology	CDS	8767	9156	.	+	0	ID=cds-WP_001125556.1;Parent=gene-C9F05_RS00365;Dbxref=GenBank:WP_001125556.1;Name=WP_001125556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462830.1;locus_tag=C9F05_RS00365;product=DUF3021 family protein;protein_id=WP_001125556.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	9226	9546	.	+	.	ID=gene-C9F05_RS00370;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=C9F05_RS00370;old_locus_tag=C9F05_00375
NZ_PYKE01000006.1	Protein Homology	CDS	9226	9546	.	+	0	ID=cds-WP_000999927.1;Parent=gene-C9F05_RS00370;Dbxref=GenBank:WP_000999927.1;Name=WP_000999927.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=cyaY;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000999950.1;locus_tag=C9F05_RS00370;product=iron donor protein CyaY;protein_id=WP_000999927.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	9617	9979	.	-	.	ID=gene-C9F05_RS00375;Name=C9F05_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00375;old_locus_tag=C9F05_00380
NZ_PYKE01000006.1	Protein Homology	CDS	9617	9979	.	-	0	ID=cds-WP_135369914.1;Parent=gene-C9F05_RS00375;Dbxref=GenBank:WP_135369914.1;Name=WP_135369914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462828.1;locus_tag=C9F05_RS00375;product=hypothetical protein;protein_id=WP_135369914.1;transl_table=11
NZ_PYKE01000006.1	RefSeq	gene	9991	10515	.	-	.	ID=gene-C9F05_RS00380;Name=C9F05_RS00380;end_range=10515,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00380;old_locus_tag=C9F05_00385;partial=true
NZ_PYKE01000006.1	Protein Homology	CDS	9991	10515	.	-	0	ID=cds-WP_255121296.1;Parent=gene-C9F05_RS00380;Dbxref=GenBank:WP_255121296.1;Name=WP_255121296.1;end_range=10515,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462827.1;locus_tag=C9F05_RS00380;partial=true;product=STM3941 family protein;protein_id=WP_255121296.1;transl_table=11
##sequence-region NZ_PYKE01000070.1 1 10486
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000070.1	RefSeq	region	1	10486	.	+	.	ID=NZ_PYKE01000070.1:1..10486;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000070.1	RefSeq	gene	104	331	.	+	.	ID=gene-C9F05_RS04510;Name=C9F05_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04510;old_locus_tag=C9F05_04575
NZ_PYKE01000070.1	GeneMarkS-2+	CDS	104	331	.	+	0	ID=cds-WP_001749759.1;Parent=gene-C9F05_RS04510;Dbxref=GenBank:WP_001749759.1;Name=WP_001749759.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS04510;product=hypothetical protein;protein_id=WP_001749759.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	351	2759	.	-	.	ID=gene-C9F05_RS04515;Name=C9F05_RS04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04515;old_locus_tag=C9F05_04580
NZ_PYKE01000070.1	Protein Homology	CDS	351	2759	.	-	0	ID=cds-WP_135370055.1;Parent=gene-C9F05_RS04515;Dbxref=GenBank:WP_135370055.1;Name=WP_135370055.1;Ontology_term=GO:0006260,GO:0004519;gbkey=CDS;go_function=endonuclease activity|0004519||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461656.1;locus_tag=C9F05_RS04515;product=replication endonuclease;protein_id=WP_135370055.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	2750	3607	.	-	.	ID=gene-C9F05_RS04520;Name=C9F05_RS04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04520;old_locus_tag=C9F05_04585
NZ_PYKE01000070.1	Protein Homology	CDS	2750	3607	.	-	0	ID=cds-WP_001749757.1;Parent=gene-C9F05_RS04520;Dbxref=GenBank:WP_001749757.1;Name=WP_001749757.1;Ontology_term=GO:0032259,GO:0032775,GO:0008757,GO:0009007,GO:0043565,GO:1904047;gbkey=CDS;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA,sequence-specific DNA binding|0043565||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA,obsolete DNA methylation on adenine|0032775||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461657.1;locus_tag=C9F05_RS04520;product=DNA adenine methylase;protein_id=WP_001749757.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	3604	3831	.	-	.	ID=gene-C9F05_RS04525;Name=C9F05_RS04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04525;old_locus_tag=C9F05_04590
NZ_PYKE01000070.1	Protein Homology	CDS	3604	3831	.	-	0	ID=cds-WP_000785509.1;Parent=gene-C9F05_RS04525;Dbxref=GenBank:WP_000785509.1;Name=WP_000785509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461658.1;locus_tag=C9F05_RS04525;product=TraR/DksA family transcriptional regulator;protein_id=WP_000785509.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	3831	4064	.	-	.	ID=gene-C9F05_RS04530;Name=C9F05_RS04530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04530;old_locus_tag=C9F05_04595
NZ_PYKE01000070.1	Protein Homology	CDS	3831	4064	.	-	0	ID=cds-WP_001244234.1;Parent=gene-C9F05_RS04530;Dbxref=GenBank:WP_001244234.1;Name=WP_001244234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461659.1;locus_tag=C9F05_RS04530;product=DUF2732 domain-containing protein;protein_id=WP_001244234.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	4132	4473	.	-	.	ID=gene-C9F05_RS04535;Name=C9F05_RS04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04535;old_locus_tag=C9F05_04600
NZ_PYKE01000070.1	Protein Homology	CDS	4132	4473	.	-	0	ID=cds-WP_000963195.1;Parent=gene-C9F05_RS04535;Dbxref=GenBank:WP_000963195.1;Name=WP_000963195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461660.1;locus_tag=C9F05_RS04535;product=DUF5347 domain-containing protein;protein_id=WP_000963195.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	4693	5151	.	+	.	ID=gene-C9F05_RS04540;Name=C9F05_RS04540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04540;old_locus_tag=C9F05_04605
NZ_PYKE01000070.1	Protein Homology	CDS	4693	5151	.	+	0	ID=cds-WP_000166366.1;Parent=gene-C9F05_RS04540;Dbxref=GenBank:WP_000166366.1;Name=WP_000166366.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461661.1;locus_tag=C9F05_RS04540;product=hypothetical protein;protein_id=WP_000166366.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	5099	5332	.	-	.	ID=gene-C9F05_RS04545;Name=C9F05_RS04545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04545;old_locus_tag=C9F05_04610
NZ_PYKE01000070.1	Protein Homology	CDS	5099	5332	.	-	0	ID=cds-WP_000957775.1;Parent=gene-C9F05_RS04545;Dbxref=GenBank:WP_000957775.1;Name=WP_000957775.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461662.1;locus_tag=C9F05_RS04545;product=phage filamentation protein Fil family protein;protein_id=WP_000957775.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	5340	5849	.	-	.	ID=gene-C9F05_RS04550;Name=C9F05_RS04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04550;old_locus_tag=C9F05_04615
NZ_PYKE01000070.1	Protein Homology	CDS	5340	5849	.	-	0	ID=cds-WP_001749756.1;Parent=gene-C9F05_RS04550;Dbxref=GenBank:WP_001749756.1;Name=WP_001749756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461663.1;locus_tag=C9F05_RS04550;product=phage regulatory CII family protein;protein_id=WP_001749756.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	5882	6130	.	-	.	ID=gene-C9F05_RS04555;Name=C9F05_RS04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04555;old_locus_tag=C9F05_04620
NZ_PYKE01000070.1	Protein Homology	CDS	5882	6130	.	-	0	ID=cds-WP_023225961.1;Parent=gene-C9F05_RS04555;Dbxref=GenBank:WP_023225961.1;Name=WP_023225961.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006817401.1;locus_tag=C9F05_RS04555;product=hypothetical protein;protein_id=WP_023225961.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	6250	6882	.	+	.	ID=gene-C9F05_RS04560;Name=C9F05_RS04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04560;old_locus_tag=C9F05_04625
NZ_PYKE01000070.1	Protein Homology	CDS	6250	6882	.	+	0	ID=cds-WP_135370056.1;Parent=gene-C9F05_RS04560;Dbxref=GenBank:WP_135370056.1;Name=WP_135370056.1;Ontology_term=GO:0045892,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747373.1;locus_tag=C9F05_RS04560;product=phage repressor protein CI;protein_id=WP_135370056.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	6886	7911	.	+	.	ID=gene-C9F05_RS04565;Name=C9F05_RS04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04565;old_locus_tag=C9F05_04630
NZ_PYKE01000070.1	Protein Homology	CDS	6886	7911	.	+	0	ID=cds-WP_001585446.1;Parent=gene-C9F05_RS04565;Dbxref=GenBank:WP_001585446.1;Name=WP_001585446.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461666.1;locus_tag=C9F05_RS04565;product=site-specific integrase;protein_id=WP_001585446.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	8240	9469	.	+	.	ID=gene-C9F05_RS04570;Name=C9F05_RS04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04570;old_locus_tag=C9F05_04635
NZ_PYKE01000070.1	Protein Homology	CDS	8240	9469	.	+	0	ID=cds-WP_135370057.1;Parent=gene-C9F05_RS04570;Dbxref=GenBank:WP_135370057.1;Name=WP_135370057.1;Ontology_term=GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: protein motif:HMM:NF007246.0;locus_tag=C9F05_RS04570;product=integrase domain-containing protein;protein_id=WP_135370057.1;transl_table=11
NZ_PYKE01000070.1	RefSeq	gene	10030	10486	.	+	.	ID=gene-C9F05_RS04575;Name=C9F05_RS04575;end_range=10486,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04575;old_locus_tag=C9F05_04640;partial=true
NZ_PYKE01000070.1	GeneMarkS-2+	CDS	10030	10486	.	+	0	ID=cds-WP_217810222.1;Parent=gene-C9F05_RS04575;Dbxref=GenBank:WP_217810222.1;Name=WP_217810222.1;end_range=10486,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS04575;partial=true;product=ABC-three component system protein;protein_id=WP_217810222.1;transl_table=11
##sequence-region NZ_PYKE01000248.1 1 47057
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000248.1	RefSeq	region	1	47057	.	+	.	ID=NZ_PYKE01000248.1:1..47057;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000248.1	RefSeq	gene	314	490	.	+	.	ID=gene-C9F05_RS23985;Name=C9F05_RS23985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23985;old_locus_tag=C9F05_16395
NZ_PYKE01000248.1	Protein Homology	CDS	314	490	.	+	0	ID=cds-WP_000469259.1;Parent=gene-C9F05_RS23985;Dbxref=GenBank:WP_000469259.1;Name=WP_000469259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518818.1;locus_tag=C9F05_RS23985;product=hypothetical protein;protein_id=WP_000469259.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	557	1330	.	-	.	ID=gene-C9F05_RS15955;Name=zupT;gbkey=Gene;gene=zupT;gene_biotype=protein_coding;locus_tag=C9F05_RS15955;old_locus_tag=C9F05_16400
NZ_PYKE01000248.1	Protein Homology	CDS	557	1330	.	-	0	ID=cds-WP_000115874.1;Parent=gene-C9F05_RS15955;Dbxref=GenBank:WP_000115874.1;Name=WP_000115874.1;gbkey=CDS;gene=zupT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462105.1;locus_tag=C9F05_RS15955;product=zinc transporter ZupT;protein_id=WP_000115874.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	1471	2259	.	+	.	ID=gene-C9F05_RS15960;Name=ygiD;gbkey=Gene;gene=ygiD;gene_biotype=protein_coding;locus_tag=C9F05_RS15960;old_locus_tag=C9F05_16405
NZ_PYKE01000248.1	Protein Homology	CDS	1471	2259	.	+	0	ID=cds-WP_001520560.1;Parent=gene-C9F05_RS15960;Dbxref=GenBank:WP_001520560.1;Name=WP_001520560.1;gbkey=CDS;gene=ygiD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001356237.1;locus_tag=C9F05_RS15960;product=4%2C5-DOPA dioxygenase extradiol;protein_id=WP_001520560.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	2320	3483	.	-	.	ID=gene-C9F05_RS15965;Name=C9F05_RS15965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15965;old_locus_tag=C9F05_16410
NZ_PYKE01000248.1	Protein Homology	CDS	2320	3483	.	-	0	ID=cds-WP_000442834.1;Parent=gene-C9F05_RS15965;Dbxref=GenBank:WP_000442834.1;Name=WP_000442834.1;Ontology_term=GO:0005524,GO:0016874,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,ligase activity|0016874||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462103.1;locus_tag=C9F05_RS15965;product=glutathionylspermidine synthase family protein;protein_id=WP_000442834.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	3489	4160	.	-	.	ID=gene-C9F05_RS15970;Name=C9F05_RS15970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15970;old_locus_tag=C9F05_16415
NZ_PYKE01000248.1	Protein Homology	CDS	3489	4160	.	-	0	ID=cds-WP_000831528.1;Parent=gene-C9F05_RS15970;Dbxref=GenBank:WP_000831528.1;Name=WP_000831528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462102.1;locus_tag=C9F05_RS15970;product=DUF1190 family protein;protein_id=WP_000831528.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	4373	5848	.	-	.	ID=gene-C9F05_RS15975;Name=tolC;gbkey=Gene;gene=tolC;gene_biotype=protein_coding;locus_tag=C9F05_RS15975;old_locus_tag=C9F05_16425
NZ_PYKE01000248.1	Protein Homology	CDS	4373	5848	.	-	0	ID=cds-WP_001663008.1;Parent=gene-C9F05_RS15975;Dbxref=GenBank:WP_001663008.1;Name=WP_001663008.1;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;gene=tolC;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462101.3;locus_tag=C9F05_RS15975;product=outer membrane channel protein TolC;protein_id=WP_001663008.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	6049	6681	.	+	.	ID=gene-C9F05_RS15980;Name=nudF;gbkey=Gene;gene=nudF;gene_biotype=protein_coding;locus_tag=C9F05_RS15980;old_locus_tag=C9F05_16430
NZ_PYKE01000248.1	Protein Homology	CDS	6049	6681	.	+	0	ID=cds-WP_001231950.1;Parent=gene-C9F05_RS15980;Dbxref=GenBank:WP_001231950.1;Name=WP_001231950.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;gene=nudF;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462100.1;locus_tag=C9F05_RS15980;product=ADP-ribose diphosphatase;protein_id=WP_001231950.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	6678	7100	.	+	.	ID=gene-C9F05_RS15985;Name=C9F05_RS15985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15985;old_locus_tag=C9F05_16435
NZ_PYKE01000248.1	Protein Homology	CDS	6678	7100	.	+	0	ID=cds-WP_000833404.1;Parent=gene-C9F05_RS15985;Dbxref=GenBank:WP_000833404.1;Name=WP_000833404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462099.1;locus_tag=C9F05_RS15985;product=DUF1249 family protein;protein_id=WP_000833404.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	7125	7952	.	+	.	ID=gene-C9F05_RS15990;Name=cpdA;gbkey=Gene;gene=cpdA;gene_biotype=protein_coding;locus_tag=C9F05_RS15990;old_locus_tag=C9F05_16440
NZ_PYKE01000248.1	Protein Homology	CDS	7125	7952	.	+	0	ID=cds-WP_000444735.1;Parent=gene-C9F05_RS15990;Dbxref=GenBank:WP_000444735.1;Name=WP_000444735.1;Ontology_term=GO:0004115;gbkey=CDS;gene=cpdA;go_function=3'%2C5'-cyclic-AMP phosphodiesterase activity|0004115||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462098.1;locus_tag=C9F05_RS15990;product=3'%2C5'-cyclic-AMP phosphodiesterase;protein_id=WP_000444735.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	7952	8533	.	+	.	ID=gene-C9F05_RS15995;Name=yqiA;gbkey=Gene;gene=yqiA;gene_biotype=protein_coding;locus_tag=C9F05_RS15995;old_locus_tag=C9F05_16445
NZ_PYKE01000248.1	Protein Homology	CDS	7952	8533	.	+	0	ID=cds-WP_000105725.1;Parent=gene-C9F05_RS15995;Dbxref=GenBank:WP_000105725.1;Name=WP_000105725.1;gbkey=CDS;gene=yqiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462097.1;locus_tag=C9F05_RS15995;product=esterase YqiA;protein_id=WP_000105725.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	8561	10453	.	+	.	ID=gene-C9F05_RS16000;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=C9F05_RS16000;old_locus_tag=C9F05_16450
NZ_PYKE01000248.1	Protein Homology	CDS	8561	10453	.	+	0	ID=cds-WP_000195318.1;Parent=gene-C9F05_RS16000;Dbxref=GenBank:WP_000195318.1;Name=WP_000195318.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=parE;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462096.1;locus_tag=C9F05_RS16000;product=DNA topoisomerase IV subunit B;protein_id=WP_000195318.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	10578	10892	.	-	.	ID=gene-C9F05_RS16005;Name=C9F05_RS16005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16005;old_locus_tag=C9F05_16455
NZ_PYKE01000248.1	Protein Homology	CDS	10578	10892	.	-	0	ID=cds-WP_000958587.1;Parent=gene-C9F05_RS16005;Dbxref=GenBank:WP_000958587.1;Name=WP_000958587.1;Ontology_term=GO:0017000,GO:0004497,GO:0016491;gbkey=CDS;go_function=monooxygenase activity|0004497||IEA,oxidoreductase activity|0016491||IEA;go_process=antibiotic biosynthetic process|0017000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462095.1;locus_tag=C9F05_RS16005;product=putative quinol monooxygenase;protein_id=WP_000958587.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	10924	11505	.	-	.	ID=gene-C9F05_RS16010;Name=C9F05_RS16010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16010;old_locus_tag=C9F05_16460
NZ_PYKE01000248.1	Protein Homology	CDS	10924	11505	.	-	0	ID=cds-WP_000065416.1;Parent=gene-C9F05_RS16010;Dbxref=GenBank:WP_000065416.1;Name=WP_000065416.1;Ontology_term=GO:0008753,GO:0009055,GO:0010181,GO:0050136;gbkey=CDS;go_function=NADPH dehydrogenase (quinone) activity|0008753||IEA,electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,NADH dehydrogenase (quinone) (non-electrogenic) activity|0050136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462094.1;locus_tag=C9F05_RS16010;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_000065416.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	11612	12961	.	-	.	ID=gene-C9F05_RS16015;Name=qseC;gbkey=Gene;gene=qseC;gene_biotype=protein_coding;locus_tag=C9F05_RS16015;old_locus_tag=C9F05_16465
NZ_PYKE01000248.1	Protein Homology	CDS	11612	12961	.	-	0	ID=cds-WP_000779328.1;Parent=gene-C9F05_RS16015;Dbxref=GenBank:WP_000779328.1;Name=WP_000779328.1;Ontology_term=GO:0007165,GO:0000155;gbkey=CDS;gene=qseC;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462093.1;locus_tag=C9F05_RS16015;product=quorum sensing histidine kinase QseC;protein_id=WP_000779328.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	12958	13617	.	-	.	ID=gene-C9F05_RS16020;Name=qseB;gbkey=Gene;gene=qseB;gene_biotype=protein_coding;locus_tag=C9F05_RS16020;old_locus_tag=C9F05_16470
NZ_PYKE01000248.1	Protein Homology	CDS	12958	13617	.	-	0	ID=cds-WP_001221574.1;Parent=gene-C9F05_RS16020;Dbxref=GenBank:WP_001221574.1;Name=WP_001221574.1;gbkey=CDS;gene=qseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462092.1;locus_tag=C9F05_RS16020;product=quorum sensing response regulator transcription factor QseB;protein_id=WP_001221574.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	13769	14161	.	+	.	ID=gene-C9F05_RS16025;Name=C9F05_RS16025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16025;old_locus_tag=C9F05_16475
NZ_PYKE01000248.1	Protein Homology	CDS	13769	14161	.	+	0	ID=cds-WP_000731552.1;Parent=gene-C9F05_RS16025;Dbxref=GenBank:WP_000731552.1;Name=WP_000731552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462091.1;locus_tag=C9F05_RS16025;product=YgiW/YdeI family stress tolerance OB fold protein;protein_id=WP_000731552.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	14233	15099	.	+	.	ID=gene-C9F05_RS16030;Name=C9F05_RS16030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16030;old_locus_tag=C9F05_16480
NZ_PYKE01000248.1	Protein Homology	CDS	14233	15099	.	+	0	ID=cds-WP_000998796.1;Parent=gene-C9F05_RS16030;Dbxref=GenBank:WP_000998796.1;Name=WP_000998796.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462090.1;locus_tag=C9F05_RS16030;product=AraC family transcriptional regulator;protein_id=WP_000998796.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	15210	17468	.	+	.	ID=gene-C9F05_RS16035;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=C9F05_RS16035;old_locus_tag=C9F05_16485
NZ_PYKE01000248.1	Protein Homology	CDS	15210	17468	.	+	0	ID=cds-WP_001281853.1;Parent=gene-C9F05_RS16035;Dbxref=GenBank:WP_001281853.1;Name=WP_001281853.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parC;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462089.1;locus_tag=C9F05_RS16035;product=DNA topoisomerase IV subunit A;protein_id=WP_001281853.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	17725	18462	.	+	.	ID=gene-C9F05_RS16040;Name=plsC;gbkey=Gene;gene=plsC;gene_biotype=protein_coding;gene_synonym=parF;locus_tag=C9F05_RS16040;old_locus_tag=C9F05_16490
NZ_PYKE01000248.1	Protein Homology	CDS	17725	18462	.	+	0	ID=cds-WP_000965730.1;Parent=gene-C9F05_RS16040;Dbxref=GenBank:WP_000965730.1;Name=WP_000965730.1;gbkey=CDS;gene=plsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462088.1;locus_tag=C9F05_RS16040;product=1-acylglycerol-3-phosphate O-acyltransferase;protein_id=WP_000965730.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	18536	19948	.	+	.	ID=gene-C9F05_RS16045;Name=ftsP;gbkey=Gene;gene=ftsP;gene_biotype=protein_coding;locus_tag=C9F05_RS16045;old_locus_tag=C9F05_16495
NZ_PYKE01000248.1	Protein Homology	CDS	18536	19948	.	+	0	ID=cds-WP_000010658.1;Parent=gene-C9F05_RS16045;Dbxref=GenBank:WP_000010658.1;Name=WP_000010658.1;Ontology_term=GO:0043093,GO:0016491;gbkey=CDS;gene=ftsP;go_function=oxidoreductase activity|0016491||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462087.1;locus_tag=C9F05_RS16045;product=cell division protein FtsP;protein_id=WP_000010658.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	19993	21300	.	-	.	ID=gene-C9F05_RS16050;Name=C9F05_RS16050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16050;old_locus_tag=C9F05_16500
NZ_PYKE01000248.1	Protein Homology	CDS	19993	21300	.	-	0	ID=cds-WP_000345259.1;Parent=gene-C9F05_RS16050;Dbxref=GenBank:WP_000345259.1;Name=WP_000345259.1;Ontology_term=GO:0008643,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462086.1;locus_tag=C9F05_RS16050;product=TRAP transporter large permease;protein_id=WP_000345259.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	21311	21793	.	-	.	ID=gene-C9F05_RS16055;Name=C9F05_RS16055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16055;old_locus_tag=C9F05_16505
NZ_PYKE01000248.1	Protein Homology	CDS	21311	21793	.	-	0	ID=cds-WP_001221828.1;Parent=gene-C9F05_RS16055;Dbxref=GenBank:WP_001221828.1;Name=WP_001221828.1;Ontology_term=GO:0015740,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462085.1;locus_tag=C9F05_RS16055;product=TRAP transporter small permease;protein_id=WP_001221828.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	21835	22818	.	-	.	ID=gene-C9F05_RS16060;Name=C9F05_RS16060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16060;old_locus_tag=C9F05_16510
NZ_PYKE01000248.1	Protein Homology	CDS	21835	22818	.	-	0	ID=cds-WP_000799367.1;Parent=gene-C9F05_RS16060;Dbxref=GenBank:WP_000799367.1;Name=WP_000799367.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462084.1;locus_tag=C9F05_RS16060;product=TRAP transporter substrate-binding protein;protein_id=WP_000799367.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	23306	25477	.	+	.	ID=gene-C9F05_RS16065;Name=C9F05_RS16065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16065;old_locus_tag=C9F05_16515
NZ_PYKE01000248.1	Protein Homology	CDS	23306	25477	.	+	0	ID=cds-WP_001626724.1;Parent=gene-C9F05_RS16065;Dbxref=GenBank:WP_001626724.1;Name=WP_001626724.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462083.1;locus_tag=C9F05_RS16065;product=YgiQ family radical SAM protein;protein_id=WP_001626724.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	25680	25874	.	+	.	ID=gene-C9F05_RS16070;Name=C9F05_RS16070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16070;old_locus_tag=C9F05_16520
NZ_PYKE01000248.1	GeneMarkS-2+	CDS	25680	25874	.	+	0	ID=cds-WP_000525382.1;Parent=gene-C9F05_RS16070;Dbxref=GenBank:WP_000525382.1;Name=WP_000525382.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS16070;product=hypothetical protein;protein_id=WP_000525382.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	26032	26487	.	-	.	ID=gene-C9F05_RS16080;Name=C9F05_RS16080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16080;old_locus_tag=C9F05_16525
NZ_PYKE01000248.1	Protein Homology	CDS	26032	26487	.	-	0	ID=cds-WP_000128242.1;Parent=gene-C9F05_RS16080;Dbxref=GenBank:WP_000128242.1;Name=WP_000128242.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462082.1;locus_tag=C9F05_RS16080;product=HIT family protein;protein_id=WP_000128242.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	pseudogene	26532	28017	.	-	.	ID=gene-C9F05_RS16085;Name=C9F05_RS16085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS16085;old_locus_tag=C9F05_16530;pseudo=true
NZ_PYKE01000248.1	Protein Homology	CDS	26532	28017	.	-	0	ID=cds-C9F05_RS16085;Parent=gene-C9F05_RS16085;Note=frameshifted;Ontology_term=GO:0006820,GO:0008509,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=monoatomic anion transmembrane transporter activity|0008509||IEA;go_process=monoatomic anion transport|0006820||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462081.3;locus_tag=C9F05_RS16085;product=DASS family sodium-coupled anion symporter;pseudo=true;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	28183	29010	.	-	.	ID=gene-C9F05_RS16090;Name=dkgA;gbkey=Gene;gene=dkgA;gene_biotype=protein_coding;locus_tag=C9F05_RS16090;old_locus_tag=C9F05_16535
NZ_PYKE01000248.1	Protein Homology	CDS	28183	29010	.	-	0	ID=cds-WP_000013100.1;Parent=gene-C9F05_RS16090;Dbxref=GenBank:WP_000013100.1;Name=WP_000013100.1;Ontology_term=GO:0050580;gbkey=CDS;gene=dkgA;go_function=2%2C5-didehydrogluconate reductase activity|0050580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462080.1;locus_tag=C9F05_RS16090;product=2%2C5-didehydrogluconate reductase DkgA;protein_id=WP_000013100.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	29116	30279	.	-	.	ID=gene-C9F05_RS16095;Name=yqhD;gbkey=Gene;gene=yqhD;gene_biotype=protein_coding;locus_tag=C9F05_RS16095;old_locus_tag=C9F05_16540
NZ_PYKE01000248.1	Protein Homology	CDS	29116	30279	.	-	0	ID=cds-WP_021000785.1;Parent=gene-C9F05_RS16095;Dbxref=GenBank:WP_021000785.1;Name=WP_021000785.1;Ontology_term=GO:0046872,GO:1990362;gbkey=CDS;gene=yqhD;go_function=metal ion binding|0046872||IEA,butanol dehydrogenase (NAD+) activity|1990362||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462079.1;locus_tag=C9F05_RS16095;product=alcohol dehydrogenase;protein_id=WP_021000785.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	30472	31371	.	+	.	ID=gene-C9F05_RS16100;Name=C9F05_RS16100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16100;old_locus_tag=C9F05_16545
NZ_PYKE01000248.1	Protein Homology	CDS	30472	31371	.	+	0	ID=cds-WP_001078198.1;Parent=gene-C9F05_RS16100;Dbxref=GenBank:WP_001078198.1;Name=WP_001078198.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001407451.1;locus_tag=C9F05_RS16100;product=AraC family transcriptional regulator;protein_id=WP_001078198.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	31435	32094	.	-	.	ID=gene-C9F05_RS16105;Name=yghB;gbkey=Gene;gene=yghB;gene_biotype=protein_coding;locus_tag=C9F05_RS16105;old_locus_tag=C9F05_16550
NZ_PYKE01000248.1	Protein Homology	CDS	31435	32094	.	-	0	ID=cds-WP_000268444.1;Parent=gene-C9F05_RS16105;Dbxref=GenBank:WP_000268444.1;Name=WP_000268444.1;gbkey=CDS;gene=yghB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462077.1;locus_tag=C9F05_RS16105;product=DedA family general envelope maintenance protein YghB;protein_id=WP_000268444.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	32234	33421	.	-	.	ID=gene-C9F05_RS16110;Name=metC;gbkey=Gene;gene=metC;gene_biotype=protein_coding;locus_tag=C9F05_RS16110;old_locus_tag=C9F05_16555
NZ_PYKE01000248.1	Protein Homology	CDS	32234	33421	.	-	0	ID=cds-WP_001524032.1;Parent=gene-C9F05_RS16110;Dbxref=GenBank:WP_001524032.1;Name=WP_001524032.1;Ontology_term=GO:0006520,GO:0019346,GO:0030170,GO:0047804;gbkey=CDS;gene=metC;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine-S-conjugate beta-lyase activity|0047804||IEA;go_process=amino acid metabolic process|0006520||IEA,transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462076.1;locus_tag=C9F05_RS16110;product=cystathionine beta-lyase;protein_id=WP_001524032.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	33673	34407	.	+	.	ID=gene-C9F05_RS16115;Name=exbB;gbkey=Gene;gene=exbB;gene_biotype=protein_coding;locus_tag=C9F05_RS16115;old_locus_tag=C9F05_16565
NZ_PYKE01000248.1	Protein Homology	CDS	33673	34407	.	+	0	ID=cds-WP_000527859.1;Parent=gene-C9F05_RS16115;Dbxref=GenBank:WP_000527859.1;Name=WP_000527859.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=exbB;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462074.1;locus_tag=C9F05_RS16115;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_000527859.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	34414	34839	.	+	.	ID=gene-C9F05_RS16120;Name=exbD;gbkey=Gene;gene=exbD;gene_biotype=protein_coding;locus_tag=C9F05_RS16120;old_locus_tag=C9F05_16570
NZ_PYKE01000248.1	Protein Homology	CDS	34414	34839	.	+	0	ID=cds-WP_001251476.1;Parent=gene-C9F05_RS16120;Dbxref=GenBank:WP_001251476.1;Name=WP_001251476.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=exbD;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462073.1;locus_tag=C9F05_RS16120;product=TonB system transport protein ExbD;protein_id=WP_001251476.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	34952	35836	.	-	.	ID=gene-C9F05_RS16125;Name=C9F05_RS16125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16125;old_locus_tag=C9F05_16575
NZ_PYKE01000248.1	Protein Homology	CDS	34952	35836	.	-	0	ID=cds-WP_000019032.1;Parent=gene-C9F05_RS16125;Dbxref=GenBank:WP_000019032.1;Name=WP_000019032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462072.1;locus_tag=C9F05_RS16125;product=SDR family oxidoreductase;protein_id=WP_000019032.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	35960	36364	.	-	.	ID=gene-C9F05_RS16130;Name=C9F05_RS16130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16130;old_locus_tag=C9F05_16580
NZ_PYKE01000248.1	Protein Homology	CDS	35960	36364	.	-	0	ID=cds-WP_000665657.1;Parent=gene-C9F05_RS16130;Dbxref=GenBank:WP_000665657.1;Name=WP_000665657.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462071.1;locus_tag=C9F05_RS16130;product=hypothetical protein;protein_id=WP_000665657.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	36351	36761	.	-	.	ID=gene-C9F05_RS16135;Name=C9F05_RS16135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16135;old_locus_tag=C9F05_16585
NZ_PYKE01000248.1	Protein Homology	CDS	36351	36761	.	-	0	ID=cds-WP_000936440.1;Parent=gene-C9F05_RS16135;Dbxref=GenBank:WP_000936440.1;Name=WP_000936440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462070.1;locus_tag=C9F05_RS16135;product=hypothetical protein;protein_id=WP_000936440.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	36865	37368	.	+	.	ID=gene-C9F05_RS16140;Name=C9F05_RS16140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16140;old_locus_tag=C9F05_16590
NZ_PYKE01000248.1	Protein Homology	CDS	36865	37368	.	+	0	ID=cds-WP_001532618.1;Parent=gene-C9F05_RS16140;Dbxref=GenBank:WP_001532618.1;Name=WP_001532618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441059.1;locus_tag=C9F05_RS16140;product=ESA_00282 family adhesion-associated protein;protein_id=WP_001532618.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	37439	37933	.	+	.	ID=gene-C9F05_RS16145;Name=C9F05_RS16145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16145;old_locus_tag=C9F05_16595
NZ_PYKE01000248.1	Protein Homology	CDS	37439	37933	.	+	0	ID=cds-WP_000439335.1;Parent=gene-C9F05_RS16145;Dbxref=GenBank:WP_000439335.1;Name=WP_000439335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462068.1;locus_tag=C9F05_RS16145;product=TIGR00645 family protein;protein_id=WP_000439335.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	38240	39883	.	+	.	ID=gene-C9F05_RS16150;Name=C9F05_RS16150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16150;old_locus_tag=C9F05_16600
NZ_PYKE01000248.1	Protein Homology	CDS	38240	39883	.	+	0	ID=cds-WP_021000782.1;Parent=gene-C9F05_RS16150;Dbxref=GenBank:WP_021000782.1;Name=WP_021000782.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462067.1;locus_tag=C9F05_RS16150;product=methyl-accepting chemotaxis protein;protein_id=WP_021000782.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	39968	40255	.	+	.	ID=gene-C9F05_RS16155;Name=C9F05_RS16155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16155;old_locus_tag=C9F05_16605
NZ_PYKE01000248.1	Protein Homology	CDS	39968	40255	.	+	0	ID=cds-WP_001059119.1;Parent=gene-C9F05_RS16155;Dbxref=GenBank:WP_001059119.1;Name=WP_001059119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462066.1;locus_tag=C9F05_RS16155;product=DUF2623 family protein;protein_id=WP_001059119.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	40445	41563	.	+	.	ID=gene-C9F05_RS16160;Name=hybO;gbkey=Gene;gene=hybO;gene_biotype=protein_coding;locus_tag=C9F05_RS16160;old_locus_tag=C9F05_16615
NZ_PYKE01000248.1	Protein Homology	CDS	40445	41563	.	+	0	ID=cds-WP_000145429.1;Parent=gene-C9F05_RS16160;Dbxref=GenBank:WP_000145429.1;Name=WP_000145429.1;gbkey=CDS;gene=hybO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462065.1;locus_tag=C9F05_RS16160;product=hydrogenase 2 small subunit;protein_id=WP_000145429.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	41566	42552	.	+	.	ID=gene-C9F05_RS16165;Name=hybA;gbkey=Gene;gene=hybA;gene_biotype=protein_coding;locus_tag=C9F05_RS16165;old_locus_tag=C9F05_16620
NZ_PYKE01000248.1	Protein Homology	CDS	41566	42552	.	+	0	ID=cds-WP_001081721.1;Parent=gene-C9F05_RS16165;Dbxref=GenBank:WP_001081721.1;Name=WP_001081721.1;gbkey=CDS;gene=hybA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462064.1;locus_tag=C9F05_RS16165;product=hydrogenase 2 operon protein HybA;protein_id=WP_001081721.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	42542	43720	.	+	.	ID=gene-C9F05_RS16170;Name=hybB;gbkey=Gene;gene=hybB;gene_biotype=protein_coding;locus_tag=C9F05_RS16170;old_locus_tag=C9F05_16625
NZ_PYKE01000248.1	Protein Homology	CDS	42542	43720	.	+	0	ID=cds-WP_000017678.1;Parent=gene-C9F05_RS16170;Dbxref=GenBank:WP_000017678.1;Name=WP_000017678.1;gbkey=CDS;gene=hybB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462063.1;locus_tag=C9F05_RS16170;product=Ni/Fe-hydrogenase cytochrome b subunit;protein_id=WP_000017678.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	43717	45420	.	+	.	ID=gene-C9F05_RS16175;Name=hybC;gbkey=Gene;gene=hybC;gene_biotype=protein_coding;locus_tag=C9F05_RS16175;old_locus_tag=C9F05_16630
NZ_PYKE01000248.1	Protein Homology	CDS	43717	45420	.	+	0	ID=cds-WP_000083044.1;Parent=gene-C9F05_RS16175;Dbxref=GenBank:WP_000083044.1;Name=WP_000083044.1;Ontology_term=GO:0008901;gbkey=CDS;gene=hybC;go_function=ferredoxin hydrogenase activity|0008901||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462062.1;locus_tag=C9F05_RS16175;product=hydrogenase 2 large subunit;protein_id=WP_000083044.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	45420	45914	.	+	.	ID=gene-C9F05_RS16180;Name=C9F05_RS16180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16180;old_locus_tag=C9F05_16635
NZ_PYKE01000248.1	Protein Homology	CDS	45420	45914	.	+	0	ID=cds-WP_001221962.1;Parent=gene-C9F05_RS16180;Dbxref=GenBank:WP_001221962.1;Name=WP_001221962.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462061.1;locus_tag=C9F05_RS16180;product=HyaD/HybD family hydrogenase maturation endopeptidase;protein_id=WP_001221962.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	45907	46395	.	+	.	ID=gene-C9F05_RS16185;Name=hybE;gbkey=Gene;gene=hybE;gene_biotype=protein_coding;locus_tag=C9F05_RS16185;old_locus_tag=C9F05_16640
NZ_PYKE01000248.1	Protein Homology	CDS	45907	46395	.	+	0	ID=cds-WP_000004951.1;Parent=gene-C9F05_RS16185;Dbxref=GenBank:WP_000004951.1;Name=WP_000004951.1;gbkey=CDS;gene=hybE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462060.1;locus_tag=C9F05_RS16185;product=hydrogenase-2 assembly chaperone;protein_id=WP_000004951.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	46388	46729	.	+	.	ID=gene-C9F05_RS16190;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=C9F05_RS16190;old_locus_tag=C9F05_16645
NZ_PYKE01000248.1	Protein Homology	CDS	46388	46729	.	+	0	ID=cds-WP_000544945.1;Parent=gene-C9F05_RS16190;Dbxref=GenBank:WP_000544945.1;Name=WP_000544945.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462059.1;locus_tag=C9F05_RS16190;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544945.1;transl_table=11
NZ_PYKE01000248.1	RefSeq	gene	46757	47005	.	+	.	ID=gene-C9F05_RS16195;Name=hybG;gbkey=Gene;gene=hybG;gene_biotype=protein_coding;locus_tag=C9F05_RS16195;old_locus_tag=C9F05_16650
NZ_PYKE01000248.1	Protein Homology	CDS	46757	47005	.	+	0	ID=cds-WP_000334890.1;Parent=gene-C9F05_RS16195;Dbxref=GenBank:WP_000334890.1;Name=WP_000334890.1;gbkey=CDS;gene=hybG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462058.1;locus_tag=C9F05_RS16195;product=hydrogenase maturation factor HybG;protein_id=WP_000334890.1;transl_table=11
##sequence-region NZ_PYKE01000130.1 1 10121
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000130.1	RefSeq	region	1	10121	.	+	.	ID=NZ_PYKE01000130.1:1..10121;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000130.1	RefSeq	gene	1	2581	.	-	.	ID=gene-C9F05_RS09535;Name=C9F05_RS09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09535;old_locus_tag=C9F05_09785;partial=true;start_range=.,1
NZ_PYKE01000130.1	Protein Homology	CDS	1	2581	.	-	0	ID=cds-WP_135370214.1;Parent=gene-C9F05_RS09535;Dbxref=GenBank:WP_135370214.1;Name=WP_135370214.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835222.1;locus_tag=C9F05_RS09535;partial=true;product=DUF4765 family protein;protein_id=WP_135370214.1;start_range=.,1;transl_table=11
NZ_PYKE01000130.1	RefSeq	pseudogene	3011	3163	.	+	.	ID=gene-C9F05_RS09540;Name=C9F05_RS09540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS09540;old_locus_tag=C9F05_09790;partial=true;pseudo=true;start_range=.,3011
NZ_PYKE01000130.1	Protein Homology	CDS	3011	3163	.	+	0	ID=cds-C9F05_RS09540;Parent=gene-C9F05_RS09540;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309956.1;locus_tag=C9F05_RS09540;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,3011;transl_table=11
NZ_PYKE01000130.1	RefSeq	gene	3269	4204	.	+	.	ID=gene-C9F05_RS09545;Name=ttcA;gbkey=Gene;gene=ttcA;gene_biotype=protein_coding;locus_tag=C9F05_RS09545;old_locus_tag=C9F05_09795
NZ_PYKE01000130.1	Protein Homology	CDS	3269	4204	.	+	0	ID=cds-WP_001156208.1;Parent=gene-C9F05_RS09545;Dbxref=GenBank:WP_001156208.1;Name=WP_001156208.1;Ontology_term=GO:0008033;gbkey=CDS;gene=ttcA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460613.1;locus_tag=C9F05_RS09545;product=tRNA 2-thiocytidine(32) synthetase TtcA;protein_id=WP_001156208.1;transl_table=11
NZ_PYKE01000130.1	RefSeq	gene	4248	5621	.	-	.	ID=gene-C9F05_RS09550;Name=dbpA;gbkey=Gene;gene=dbpA;gene_biotype=protein_coding;locus_tag=C9F05_RS09550;old_locus_tag=C9F05_09800
NZ_PYKE01000130.1	Protein Homology	CDS	4248	5621	.	-	0	ID=cds-WP_131046050.1;Parent=gene-C9F05_RS09550;Dbxref=GenBank:WP_131046050.1;Name=WP_131046050.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=dbpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460614.1;locus_tag=C9F05_RS09550;product=ATP-dependent RNA helicase DbpA;protein_id=WP_131046050.1;transl_table=11
NZ_PYKE01000130.1	RefSeq	gene	5650	5832	.	-	.	ID=gene-C9F05_RS24140;Name=ynaL;gbkey=Gene;gene=ynaL;gene_biotype=protein_coding;locus_tag=C9F05_RS24140;old_locus_tag=C9F05_09805
NZ_PYKE01000130.1	Protein Homology	CDS	5650	5832	.	-	0	ID=cds-WP_001670836.1;Parent=gene-C9F05_RS24140;Dbxref=GenBank:WP_001670836.1;Name=WP_001670836.1;gbkey=CDS;gene=ynaL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_271267465.1;locus_tag=C9F05_RS24140;product=proline-rich small protein YnaL;protein_id=WP_001670836.1;transl_table=11
NZ_PYKE01000130.1	RefSeq	gene	6108	7091	.	-	.	ID=gene-C9F05_RS09560;Name=zntB;gbkey=Gene;gene=zntB;gene_biotype=protein_coding;locus_tag=C9F05_RS09560;old_locus_tag=C9F05_09810
NZ_PYKE01000130.1	Protein Homology	CDS	6108	7091	.	-	0	ID=cds-WP_079946235.1;Parent=gene-C9F05_RS09560;Dbxref=GenBank:WP_079946235.1;Name=WP_079946235.1;Ontology_term=GO:0071577,GO:0005385,GO:0005886;gbkey=CDS;gene=zntB;go_component=plasma membrane|0005886||IEA;go_function=zinc ion transmembrane transporter activity|0005385||IEA;go_process=zinc ion transmembrane transport|0071577||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460615.1;locus_tag=C9F05_RS09560;product=zinc transporter ZntB;protein_id=WP_079946235.1;transl_table=11
NZ_PYKE01000130.1	RefSeq	gene	7237	8391	.	-	.	ID=gene-C9F05_RS09565;Name=C9F05_RS09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09565;old_locus_tag=C9F05_09815
NZ_PYKE01000130.1	Protein Homology	CDS	7237	8391	.	-	0	ID=cds-WP_000945621.1;Parent=gene-C9F05_RS09565;Dbxref=GenBank:WP_000945621.1;Name=WP_000945621.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460616.1;locus_tag=C9F05_RS09565;product=methyl-accepting chemotaxis protein;protein_id=WP_000945621.1;transl_table=11
NZ_PYKE01000130.1	RefSeq	gene	8784	9347	.	-	.	ID=gene-C9F05_RS09570;Name=smrA;gbkey=Gene;gene=smrA;gene_biotype=protein_coding;locus_tag=C9F05_RS09570;old_locus_tag=C9F05_09820
NZ_PYKE01000130.1	Protein Homology	CDS	8784	9347	.	-	0	ID=cds-WP_001046799.1;Parent=gene-C9F05_RS09570;Dbxref=GenBank:WP_001046799.1;Name=WP_001046799.1;gbkey=CDS;gene=smrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460617.1;locus_tag=C9F05_RS09570;product=DNA endonuclease SmrA;protein_id=WP_001046799.1;transl_table=11
NZ_PYKE01000130.1	RefSeq	gene	9605	10120	.	+	.	ID=gene-C9F05_RS09575;Name=ogt;gbkey=Gene;gene=ogt;gene_biotype=protein_coding;locus_tag=C9F05_RS09575;old_locus_tag=C9F05_09825
NZ_PYKE01000130.1	Protein Homology	CDS	9605	10120	.	+	0	ID=cds-WP_000945037.1;Parent=gene-C9F05_RS09575;Dbxref=GenBank:WP_000945037.1;Name=WP_000945037.1;Ontology_term=GO:0006281,GO:0003908;gbkey=CDS;gene=ogt;go_function=methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460618.1;locus_tag=C9F05_RS09575;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=WP_000945037.1;transl_table=11
##sequence-region NZ_PYKE01000313.1 1 10114
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000313.1	RefSeq	region	1	10114	.	+	.	ID=NZ_PYKE01000313.1:1..10114;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000313.1	RefSeq	gene	175	537	.	+	.	ID=gene-C9F05_RS21355;Name=C9F05_RS21355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21355;old_locus_tag=C9F05_21945
NZ_PYKE01000313.1	Protein Homology	CDS	175	537	.	+	0	ID=cds-WP_001537781.1;Parent=gene-C9F05_RS21355;Dbxref=GenBank:WP_001537781.1;Name=WP_001537781.1;Ontology_term=GO:0043856,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=anti-sigma factor antagonist activity|0043856||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460083.1;locus_tag=C9F05_RS21355;product=anti-adapter protein IraM;protein_id=WP_001537781.1;transl_table=11
NZ_PYKE01000313.1	RefSeq	gene	945	1883	.	-	.	ID=gene-C9F05_RS21360;Name=C9F05_RS21360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21360;old_locus_tag=C9F05_21950
NZ_PYKE01000313.1	Protein Homology	CDS	945	1883	.	-	0	ID=cds-WP_000976561.1;Parent=gene-C9F05_RS21360;Dbxref=GenBank:WP_000976561.1;Name=WP_000976561.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460082.1;locus_tag=C9F05_RS21360;product=MBL fold metallo-hydrolase;protein_id=WP_000976561.1;transl_table=11
NZ_PYKE01000313.1	RefSeq	gene	1897	2793	.	-	.	ID=gene-C9F05_RS21365;Name=hpaA;gbkey=Gene;gene=hpaA;gene_biotype=protein_coding;locus_tag=C9F05_RS21365;old_locus_tag=C9F05_21955
NZ_PYKE01000313.1	Protein Homology	CDS	1897	2793	.	-	0	ID=cds-WP_000336602.1;Parent=gene-C9F05_RS21365;Dbxref=GenBank:WP_000336602.1;Name=WP_000336602.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=hpaA;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460081.1;locus_tag=C9F05_RS21365;product=4-hydroxyphenylacetate catabolism regulatory protein HpaA;protein_id=WP_000336602.1;transl_table=11
NZ_PYKE01000313.1	RefSeq	gene	2803	4179	.	-	.	ID=gene-C9F05_RS21370;Name=hpaX;gbkey=Gene;gene=hpaX;gene_biotype=protein_coding;locus_tag=C9F05_RS21370;old_locus_tag=C9F05_21960
NZ_PYKE01000313.1	Protein Homology	CDS	2803	4179	.	-	0	ID=cds-WP_017440944.1;Parent=gene-C9F05_RS21370;Dbxref=GenBank:WP_017440944.1;Name=WP_017440944.1;Ontology_term=GO:1900754,GO:1901241;gbkey=CDS;gene=hpaX;go_function=4-hydroxyphenylacetate transmembrane transporter activity|1901241||IEA;go_process=4-hydroxyphenylacetate transport|1900754||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460080.1;locus_tag=C9F05_RS21370;product=4-hydroxyphenylacetate permease;protein_id=WP_017440944.1;transl_table=11
NZ_PYKE01000313.1	RefSeq	gene	4251	5042	.	-	.	ID=gene-C9F05_RS21375;Name=hpaI;gbkey=Gene;gene=hpaI;gene_biotype=protein_coding;locus_tag=C9F05_RS21375;old_locus_tag=C9F05_21965
NZ_PYKE01000313.1	Protein Homology	CDS	4251	5042	.	-	0	ID=cds-WP_135370626.1;Parent=gene-C9F05_RS21375;Dbxref=GenBank:WP_135370626.1;Name=WP_135370626.1;Ontology_term=GO:0010124;gbkey=CDS;gene=hpaI;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460079.1;locus_tag=C9F05_RS21375;product=4-hydroxy-2-oxoheptanedioate aldolase;protein_id=WP_135370626.1;transl_table=11
NZ_PYKE01000313.1	RefSeq	gene	5053	5856	.	-	.	ID=gene-C9F05_RS21380;Name=hpaH;gbkey=Gene;gene=hpaH;gene_biotype=protein_coding;locus_tag=C9F05_RS21380;old_locus_tag=C9F05_21970
NZ_PYKE01000313.1	Protein Homology	CDS	5053	5856	.	-	0	ID=cds-WP_000884795.1;Parent=gene-C9F05_RS21380;Dbxref=GenBank:WP_000884795.1;Name=WP_000884795.1;Ontology_term=GO:0009056,GO:0018817;gbkey=CDS;gene=hpaH;go_function=2-oxo-hept-3-ene-1%2C7-dioate hydratase activity|0018817||IEA;go_process=catabolic process|0009056||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460078.1;locus_tag=C9F05_RS21380;product=2-oxo-hept-4-ene-1%2C7-dioate hydratase;protein_id=WP_000884795.1;transl_table=11
NZ_PYKE01000313.1	RefSeq	gene	6001	6381	.	-	.	ID=gene-C9F05_RS21385;Name=C9F05_RS21385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21385;old_locus_tag=C9F05_21975
NZ_PYKE01000313.1	Protein Homology	CDS	6001	6381	.	-	0	ID=cds-WP_001119857.1;Parent=gene-C9F05_RS21385;Dbxref=GenBank:WP_001119857.1;Name=WP_001119857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460077.1;locus_tag=C9F05_RS21385;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase;protein_id=WP_001119857.1;transl_table=11
NZ_PYKE01000313.1	RefSeq	gene	6391	7242	.	-	.	ID=gene-C9F05_RS21390;Name=hpaD;gbkey=Gene;gene=hpaD;gene_biotype=protein_coding;locus_tag=C9F05_RS21390;old_locus_tag=C9F05_21980
NZ_PYKE01000313.1	Protein Homology	CDS	6391	7242	.	-	0	ID=cds-WP_080233144.1;Parent=gene-C9F05_RS21390;Dbxref=GenBank:WP_080233144.1;Name=WP_080233144.1;Ontology_term=GO:0008152,GO:0008198,GO:0008687;gbkey=CDS;gene=hpaD;go_function=ferrous iron binding|0008198||IEA,3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase activity|0008687||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460076.1;locus_tag=C9F05_RS21390;product=3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase;protein_id=WP_080233144.1;transl_table=11
NZ_PYKE01000313.1	RefSeq	gene	7244	8710	.	-	.	ID=gene-C9F05_RS21395;Name=hpaE;gbkey=Gene;gene=hpaE;gene_biotype=protein_coding;locus_tag=C9F05_RS21395;old_locus_tag=C9F05_21985
NZ_PYKE01000313.1	Protein Homology	CDS	7244	8710	.	-	0	ID=cds-WP_000723529.1;Parent=gene-C9F05_RS21395;Dbxref=GenBank:WP_000723529.1;Name=WP_000723529.1;Ontology_term=GO:1901023,GO:0018480;gbkey=CDS;gene=hpaE;go_function=5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity|0018480||IEA;go_process=4-hydroxyphenylacetate catabolic process|1901023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460075.1;locus_tag=C9F05_RS21395;product=5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase;protein_id=WP_000723529.1;transl_table=11
NZ_PYKE01000313.1	RefSeq	gene	8707	9996	.	-	.	ID=gene-C9F05_RS21400;Name=hpaG;gbkey=Gene;gene=hpaG;gene_biotype=protein_coding;locus_tag=C9F05_RS21400;old_locus_tag=C9F05_21990
NZ_PYKE01000313.1	Protein Homology	CDS	8707	9996	.	-	0	ID=cds-WP_000679210.1;Parent=gene-C9F05_RS21400;Dbxref=GenBank:WP_000679210.1;Name=WP_000679210.1;Ontology_term=GO:1901023,GO:0008704,GO:0018800;gbkey=CDS;gene=hpaG;go_function=5-carboxymethyl-2-hydroxymuconate delta-isomerase activity|0008704||IEA,5-oxopent-3-ene-1%2C2%2C5-tricarboxylate decarboxylase activity|0018800||IEA;go_process=4-hydroxyphenylacetate catabolic process|1901023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460074.1;locus_tag=C9F05_RS21400;product=4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase;protein_id=WP_000679210.1;transl_table=11
##sequence-region NZ_PYKE01000183.1 1 10071
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000183.1	RefSeq	region	1	10071	.	+	.	ID=NZ_PYKE01000183.1:1..10071;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000183.1	RefSeq	gene	188	1045	.	+	.	ID=gene-C9F05_RS12275;Name=focA;gbkey=Gene;gene=focA;gene_biotype=protein_coding;locus_tag=C9F05_RS12275;old_locus_tag=C9F05_12625
NZ_PYKE01000183.1	Protein Homology	CDS	188	1045	.	+	0	ID=cds-WP_000642539.1;Parent=gene-C9F05_RS12275;Dbxref=GenBank:WP_000642539.1;Name=WP_000642539.1;gbkey=CDS;gene=focA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459949.1;locus_tag=C9F05_RS12275;product=formate transporter FocA;protein_id=WP_000642539.1;transl_table=11
NZ_PYKE01000183.1	RefSeq	gene	1105	3387	.	+	.	ID=gene-C9F05_RS12280;Name=pflB;gbkey=Gene;gene=pflB;gene_biotype=protein_coding;locus_tag=C9F05_RS12280;old_locus_tag=C9F05_12630
NZ_PYKE01000183.1	Protein Homology	CDS	1105	3387	.	+	0	ID=cds-WP_001292799.1;Parent=gene-C9F05_RS12280;Dbxref=GenBank:WP_001292799.1;Name=WP_001292799.1;Ontology_term=GO:0005975,GO:0008861,GO:0005737;gbkey=CDS;gene=pflB;go_component=cytoplasm|0005737||IEA;go_function=formate C-acetyltransferase activity|0008861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459948.1;locus_tag=C9F05_RS12280;product=formate C-acetyltransferase;protein_id=WP_001292799.1;transl_table=11
NZ_PYKE01000183.1	RefSeq	gene	3459	4412	.	-	.	ID=gene-C9F05_RS12285;Name=sopD2;gbkey=Gene;gene=sopD2;gene_biotype=protein_coding;locus_tag=C9F05_RS12285;old_locus_tag=C9F05_12635
NZ_PYKE01000183.1	Protein Homology	CDS	3459	4412	.	-	0	ID=cds-WP_135370321.1;Parent=gene-C9F05_RS12285;Dbxref=GenBank:WP_135370321.1;Name=WP_135370321.1;gbkey=CDS;gene=sopD2;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001145575.1;locus_tag=C9F05_RS12285;product=type III secretion system effector SopD2;protein_id=WP_135370321.1;transl_table=11
NZ_PYKE01000183.1	RefSeq	pseudogene	4543	4868	.	+	.	ID=gene-C9F05_RS23840;Name=C9F05_RS23840;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23840;pseudo=true
NZ_PYKE01000183.1	Protein Homology	CDS	4543	4868	.	+	0	ID=cds-C9F05_RS23840;Parent=gene-C9F05_RS23840;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459946.1;locus_tag=C9F05_RS23840;product=cytoplasmic protein;pseudo=true;transl_table=11
NZ_PYKE01000183.1	RefSeq	gene	4987	5784	.	+	.	ID=gene-C9F05_RS12290;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=C9F05_RS12290;old_locus_tag=C9F05_12640
NZ_PYKE01000183.1	Protein Homology	CDS	4987	5784	.	+	0	ID=cds-WP_000067928.1;Parent=gene-C9F05_RS12290;Dbxref=GenBank:WP_000067928.1;Name=WP_000067928.1;Ontology_term=GO:0043365,GO:0051539;gbkey=CDS;gene=pflA;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015696619.1;locus_tag=C9F05_RS12290;product=pyruvate formate lyase 1-activating protein;protein_id=WP_000067928.1;transl_table=11
NZ_PYKE01000183.1	RefSeq	gene	6077	7498	.	-	.	ID=gene-C9F05_RS12295;Name=C9F05_RS12295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12295;old_locus_tag=C9F05_12645
NZ_PYKE01000183.1	Protein Homology	CDS	6077	7498	.	-	0	ID=cds-WP_001134264.1;Parent=gene-C9F05_RS12295;Dbxref=GenBank:WP_001134264.1;Name=WP_001134264.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459944.1;locus_tag=C9F05_RS12295;product=APC family permease;protein_id=WP_001134264.1;transl_table=11
NZ_PYKE01000183.1	RefSeq	gene	7716	8864	.	-	.	ID=gene-C9F05_RS12300;Name=C9F05_RS12300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12300;old_locus_tag=C9F05_12650
NZ_PYKE01000183.1	Protein Homology	CDS	7716	8864	.	-	0	ID=cds-WP_000109278.1;Parent=gene-C9F05_RS12300;Dbxref=GenBank:WP_000109278.1;Name=WP_000109278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459943.1;locus_tag=C9F05_RS12300;product=MFS transporter;protein_id=WP_000109278.1;transl_table=11
NZ_PYKE01000183.1	RefSeq	gene	9214	10071	.	-	.	ID=gene-C9F05_RS12305;Name=C9F05_RS12305;end_range=10071,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12305;old_locus_tag=C9F05_12655;partial=true
NZ_PYKE01000183.1	Protein Homology	CDS	9214	10071	.	-	0	ID=cds-WP_048485261.1;Parent=gene-C9F05_RS12305;Dbxref=GenBank:WP_048485261.1;Name=WP_048485261.1;Ontology_term=GO:0009061,GO:0019645,GO:0009389,GO:0005886,GO:0009390;end_range=10071,.;gbkey=CDS;go_component=plasma membrane|0005886||IEA,dimethyl sulfoxide reductase complex|0009390||IEA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA;go_process=anaerobic respiration|0009061||IEA,anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459942.1;locus_tag=C9F05_RS12305;partial=true;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_048485261.1;transl_table=11
##sequence-region NZ_PYKE01000066.1 1 46799
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000066.1	RefSeq	region	1	46799	.	+	.	ID=NZ_PYKE01000066.1:1..46799;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000066.1	RefSeq	gene	271	2061	.	+	.	ID=gene-C9F05_RS04115;Name=C9F05_RS04115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04115;old_locus_tag=C9F05_04180
NZ_PYKE01000066.1	Protein Homology	CDS	271	2061	.	+	0	ID=cds-WP_000899639.1;Parent=gene-C9F05_RS04115;Dbxref=GenBank:WP_000899639.1;Name=WP_000899639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462979.1;locus_tag=C9F05_RS04115;product=aryl-sulfate sulfotransferase;protein_id=WP_000899639.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	2262	2924	.	+	.	ID=gene-C9F05_RS04120;Name=C9F05_RS04120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04120;old_locus_tag=C9F05_04185
NZ_PYKE01000066.1	Protein Homology	CDS	2262	2924	.	+	0	ID=cds-WP_000792803.1;Parent=gene-C9F05_RS04120;Dbxref=GenBank:WP_000792803.1;Name=WP_000792803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462978.1;locus_tag=C9F05_RS04120;product=TIGR02117 family protein;protein_id=WP_000792803.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	2969	3181	.	-	.	ID=gene-C9F05_RS04125;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=C9F05_RS04125;old_locus_tag=C9F05_04190
NZ_PYKE01000066.1	Protein Homology	CDS	2969	3181	.	-	0	ID=cds-WP_000715284.1;Parent=gene-C9F05_RS04125;Dbxref=GenBank:WP_000715284.1;Name=WP_000715284.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462977.1;locus_tag=C9F05_RS04125;product=50S ribosomal protein L31;protein_id=WP_000715284.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	3385	5583	.	+	.	ID=gene-C9F05_RS04130;Name=priA;gbkey=Gene;gene=priA;gene_biotype=protein_coding;locus_tag=C9F05_RS04130;old_locus_tag=C9F05_04195
NZ_PYKE01000066.1	Protein Homology	CDS	3385	5583	.	+	0	ID=cds-WP_000109397.1;Parent=gene-C9F05_RS04130;Dbxref=GenBank:WP_000109397.1;Name=WP_000109397.1;gbkey=CDS;gene=priA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462976.1;locus_tag=C9F05_RS04130;product=primosomal protein N';protein_id=WP_000109397.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	5738	6763	.	+	.	ID=gene-C9F05_RS04135;Name=cytR;gbkey=Gene;gene=cytR;gene_biotype=protein_coding;locus_tag=C9F05_RS04135;old_locus_tag=C9F05_04200
NZ_PYKE01000066.1	Protein Homology	CDS	5738	6763	.	+	0	ID=cds-WP_000841337.1;Parent=gene-C9F05_RS04135;Dbxref=GenBank:WP_000841337.1;Name=WP_000841337.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=cytR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462975.1;locus_tag=C9F05_RS04135;product=DNA-binding transcriptional regulator CytR;protein_id=WP_000841337.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	6857	7831	.	+	.	ID=gene-C9F05_RS04140;Name=ftsN;gbkey=Gene;gene=ftsN;gene_biotype=protein_coding;locus_tag=C9F05_RS04140;old_locus_tag=C9F05_04205
NZ_PYKE01000066.1	Protein Homology	CDS	6857	7831	.	+	0	ID=cds-WP_000068811.1;Parent=gene-C9F05_RS04140;Dbxref=GenBank:WP_000068811.1;Name=WP_000068811.1;Ontology_term=GO:0042834;gbkey=CDS;gene=ftsN;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462974.1;locus_tag=C9F05_RS04140;product=cell division protein FtsN;protein_id=WP_000068811.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	7923	8453	.	+	.	ID=gene-C9F05_RS04145;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=C9F05_RS04145;old_locus_tag=C9F05_04210
NZ_PYKE01000066.1	Protein Homology	CDS	7923	8453	.	+	0	ID=cds-WP_000208240.1;Parent=gene-C9F05_RS04145;Dbxref=GenBank:WP_000208240.1;Name=WP_000208240.1;Ontology_term=GO:0051603,GO:0004298,GO:0009376;gbkey=CDS;gene=hslV;go_component=HslUV protease complex|0009376||IEA;go_function=threonine-type endopeptidase activity|0004298||IEA;go_process=proteolysis involved in protein catabolic process|0051603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462973.1;locus_tag=C9F05_RS04145;product=ATP-dependent protease subunit HslV;protein_id=WP_000208240.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	8463	9794	.	+	.	ID=gene-C9F05_RS04150;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=C9F05_RS04150;old_locus_tag=C9F05_04215
NZ_PYKE01000066.1	Protein Homology	CDS	8463	9794	.	+	0	ID=cds-WP_001293360.1;Parent=gene-C9F05_RS04150;Dbxref=GenBank:WP_001293360.1;Name=WP_001293360.1;Ontology_term=GO:0006508,GO:0004176,GO:0005524,GO:0009376;gbkey=CDS;gene=hslU;go_component=HslUV protease complex|0009376||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,ATP binding|0005524||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019841241.1;locus_tag=C9F05_RS04150;product=HslU--HslV peptidase ATPase subunit;protein_id=WP_001293360.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	9861	10790	.	+	.	ID=gene-C9F05_RS04155;Name=menA;gbkey=Gene;gene=menA;gene_biotype=protein_coding;locus_tag=C9F05_RS04155;old_locus_tag=C9F05_04220
NZ_PYKE01000066.1	Protein Homology	CDS	9861	10790	.	+	0	ID=cds-WP_000139639.1;Parent=gene-C9F05_RS04155;Dbxref=GenBank:WP_000139639.1;Name=WP_000139639.1;gbkey=CDS;gene=menA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462971.1;locus_tag=C9F05_RS04155;product=1%2C4-dihydroxy-2-naphthoate polyprenyltransferase;protein_id=WP_000139639.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	10883	11368	.	+	.	ID=gene-C9F05_RS04160;Name=rraA;gbkey=Gene;gene=rraA;gene_biotype=protein_coding;locus_tag=C9F05_RS04160;old_locus_tag=C9F05_04225
NZ_PYKE01000066.1	Protein Homology	CDS	10883	11368	.	+	0	ID=cds-WP_000872918.1;Parent=gene-C9F05_RS04160;Dbxref=GenBank:WP_000872918.1;Name=WP_000872918.1;Ontology_term=GO:0051252,GO:0008428;gbkey=CDS;gene=rraA;go_function=ribonuclease inhibitor activity|0008428||IEA;go_process=regulation of RNA metabolic process|0051252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001392924.1;locus_tag=C9F05_RS04160;product=ribonuclease E activity regulator RraA;protein_id=WP_000872918.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	11590	11829	.	-	.	ID=gene-C9F05_RS04165;Name=zapB;gbkey=Gene;gene=zapB;gene_biotype=protein_coding;locus_tag=C9F05_RS04165;old_locus_tag=C9F05_04230
NZ_PYKE01000066.1	Protein Homology	CDS	11590	11829	.	-	0	ID=cds-WP_000051370.1;Parent=gene-C9F05_RS04165;Dbxref=GenBank:WP_000051370.1;Name=WP_000051370.1;gbkey=CDS;gene=zapB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229475.1;locus_tag=C9F05_RS04165;product=septal ring assembly protein ZapB;protein_id=WP_000051370.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	12228	13073	.	+	.	ID=gene-C9F05_RS04170;Name=C9F05_RS04170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04170;old_locus_tag=C9F05_04235
NZ_PYKE01000066.1	Protein Homology	CDS	12228	13073	.	+	0	ID=cds-WP_000084285.1;Parent=gene-C9F05_RS04170;Dbxref=GenBank:WP_000084285.1;Name=WP_000084285.1;Ontology_term=GO:0055085,GO:0015267;gbkey=CDS;go_function=channel activity|0015267||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462968.1;locus_tag=C9F05_RS04170;product=MIP/aquaporin family protein;protein_id=WP_000084285.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	13094	14602	.	+	.	ID=gene-C9F05_RS04175;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=C9F05_RS04175;old_locus_tag=C9F05_04240
NZ_PYKE01000066.1	Protein Homology	CDS	13094	14602	.	+	0	ID=cds-WP_000136808.1;Parent=gene-C9F05_RS04175;Dbxref=GenBank:WP_000136808.1;Name=WP_000136808.1;Ontology_term=GO:0006072,GO:0004370;gbkey=CDS;gene=glpK;go_function=glycerol kinase activity|0004370||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462967.1;locus_tag=C9F05_RS04175;product=glycerol kinase GlpK;protein_id=WP_000136808.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	14714	15724	.	+	.	ID=gene-C9F05_RS04180;Name=glpX;gbkey=Gene;gene=glpX;gene_biotype=protein_coding;locus_tag=C9F05_RS04180;old_locus_tag=C9F05_04245
NZ_PYKE01000066.1	Protein Homology	CDS	14714	15724	.	+	0	ID=cds-WP_001250624.1;Parent=gene-C9F05_RS04180;Dbxref=GenBank:WP_001250624.1;Name=WP_001250624.1;Ontology_term=GO:0006071,GO:0006094,GO:0042132;gbkey=CDS;gene=glpX;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=glycerol metabolic process|0006071||IEA,gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462966.1;locus_tag=C9F05_RS04180;product=class II fructose-bisphosphatase;protein_id=WP_001250624.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	15821	16567	.	+	.	ID=gene-C9F05_RS04185;Name=fpr;gbkey=Gene;gene=fpr;gene_biotype=protein_coding;locus_tag=C9F05_RS04185;old_locus_tag=C9F05_04250
NZ_PYKE01000066.1	Protein Homology	CDS	15821	16567	.	+	0	ID=cds-WP_000796292.1;Parent=gene-C9F05_RS04185;Dbxref=GenBank:WP_000796292.1;Name=WP_000796292.1;Ontology_term=GO:0004324;gbkey=CDS;gene=fpr;go_function=ferredoxin-NADP+ reductase activity|0004324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462965.1;locus_tag=C9F05_RS04185;product=ferredoxin--NADP(+) reductase;protein_id=WP_000796292.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	16677	17105	.	-	.	ID=gene-C9F05_RS04190;Name=C9F05_RS04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04190;old_locus_tag=C9F05_04255
NZ_PYKE01000066.1	Protein Homology	CDS	16677	17105	.	-	0	ID=cds-WP_000155237.1;Parent=gene-C9F05_RS04190;Dbxref=GenBank:WP_000155237.1;Name=WP_000155237.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462964.1;locus_tag=C9F05_RS04190;product=DUF805 domain-containing protein;protein_id=WP_000155237.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	17206	17802	.	+	.	ID=gene-C9F05_RS04195;Name=C9F05_RS04195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04195;old_locus_tag=C9F05_04260
NZ_PYKE01000066.1	Protein Homology	CDS	17206	17802	.	+	0	ID=cds-WP_000802241.1;Parent=gene-C9F05_RS04195;Dbxref=GenBank:WP_000802241.1;Name=WP_000802241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462963.1;locus_tag=C9F05_RS04195;product=YiiQ family protein;protein_id=WP_000802241.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	17915	18682	.	+	.	ID=gene-C9F05_RS04200;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=C9F05_RS04200;old_locus_tag=C9F05_04265
NZ_PYKE01000066.1	Protein Homology	CDS	17915	18682	.	+	0	ID=cds-WP_001216339.1;Parent=gene-C9F05_RS04200;Dbxref=GenBank:WP_001216339.1;Name=WP_001216339.1;Ontology_term=GO:0006096,GO:0004807;gbkey=CDS;gene=tpiA;go_function=triose-phosphate isomerase activity|0004807||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462962.1;locus_tag=C9F05_RS04200;product=triose-phosphate isomerase;protein_id=WP_001216339.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	18774	19538	.	-	.	ID=gene-C9F05_RS04205;Name=C9F05_RS04205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04205;old_locus_tag=C9F05_04270
NZ_PYKE01000066.1	Protein Homology	CDS	18774	19538	.	-	0	ID=cds-WP_001088047.1;Parent=gene-C9F05_RS04205;Dbxref=GenBank:WP_001088047.1;Name=WP_001088047.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462961.1;locus_tag=C9F05_RS04205;product=epimerase;protein_id=WP_001088047.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	19548	19838	.	-	.	ID=gene-C9F05_RS04210;Name=lsrG;gbkey=Gene;gene=lsrG;gene_biotype=protein_coding;locus_tag=C9F05_RS04210;old_locus_tag=C9F05_04275
NZ_PYKE01000066.1	Protein Homology	CDS	19548	19838	.	-	0	ID=cds-WP_001543603.1;Parent=gene-C9F05_RS04210;Dbxref=GenBank:WP_001543603.1;Name=WP_001543603.1;gbkey=CDS;gene=lsrG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310152.1;locus_tag=C9F05_RS04210;product=(4S)-4-hydroxy-5-phosphonooxypentane-2%2C3-dione isomerase;protein_id=WP_001543603.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	19921	20796	.	-	.	ID=gene-C9F05_RS04215;Name=lsrF;gbkey=Gene;gene=lsrF;gene_biotype=protein_coding;locus_tag=C9F05_RS04215;old_locus_tag=C9F05_04280
NZ_PYKE01000066.1	Protein Homology	CDS	19921	20796	.	-	0	ID=cds-WP_000774146.1;Parent=gene-C9F05_RS04215;Dbxref=GenBank:WP_000774146.1;Name=WP_000774146.1;gbkey=CDS;gene=lsrF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000774144.1;locus_tag=C9F05_RS04215;product=3-hydroxy-5-phosphonooxypentane-2%2C4-dione thiolase LsrF;protein_id=WP_000774146.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	20825	21847	.	-	.	ID=gene-C9F05_RS04220;Name=lsrB;gbkey=Gene;gene=lsrB;gene_biotype=protein_coding;locus_tag=C9F05_RS04220;old_locus_tag=C9F05_04285
NZ_PYKE01000066.1	Protein Homology	CDS	20825	21847	.	-	0	ID=cds-WP_000090737.1;Parent=gene-C9F05_RS04220;Dbxref=GenBank:WP_000090737.1;Name=WP_000090737.1;gbkey=CDS;gene=lsrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462958.1;locus_tag=C9F05_RS04220;product=autoinducer 2 ABC transporter substrate-binding protein LsrB;protein_id=WP_000090737.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	21876	22877	.	-	.	ID=gene-C9F05_RS04225;Name=lsrD;gbkey=Gene;gene=lsrD;gene_biotype=protein_coding;locus_tag=C9F05_RS04225;old_locus_tag=C9F05_04290
NZ_PYKE01000066.1	Protein Homology	CDS	21876	22877	.	-	0	ID=cds-WP_000981831.1;Parent=gene-C9F05_RS04225;Dbxref=GenBank:WP_000981831.1;Name=WP_000981831.1;gbkey=CDS;gene=lsrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462957.1;locus_tag=C9F05_RS04225;product=autoinducer 2 ABC transporter permease LsrD;protein_id=WP_000981831.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	22874	23917	.	-	.	ID=gene-C9F05_RS04230;Name=lsrC;gbkey=Gene;gene=lsrC;gene_biotype=protein_coding;locus_tag=C9F05_RS04230;old_locus_tag=C9F05_04295
NZ_PYKE01000066.1	Protein Homology	CDS	22874	23917	.	-	0	ID=cds-WP_000911133.1;Parent=gene-C9F05_RS04230;Dbxref=GenBank:WP_000911133.1;Name=WP_000911133.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=lsrC;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462956.1;locus_tag=C9F05_RS04230;product=autoinducer 2 ABC transporter permease LsrC;protein_id=WP_000911133.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	23911	25446	.	-	.	ID=gene-C9F05_RS04235;Name=lsrA;gbkey=Gene;gene=lsrA;gene_biotype=protein_coding;locus_tag=C9F05_RS04235;old_locus_tag=C9F05_04300
NZ_PYKE01000066.1	Protein Homology	CDS	23911	25446	.	-	0	ID=cds-WP_001167248.1;Parent=gene-C9F05_RS04235;Dbxref=GenBank:WP_001167248.1;Name=WP_001167248.1;Ontology_term=GO:1905887,GO:0005524,GO:0042626,GO:0016020;gbkey=CDS;gene=lsrA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=autoinducer AI-2 transmembrane transport|1905887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462955.1;locus_tag=C9F05_RS04235;product=autoinducer 2 ABC transporter ATP-binding protein LsrA;protein_id=WP_001167248.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	25704	26663	.	+	.	ID=gene-C9F05_RS04240;Name=lsrR;gbkey=Gene;gene=lsrR;gene_biotype=protein_coding;locus_tag=C9F05_RS04240;old_locus_tag=C9F05_04305
NZ_PYKE01000066.1	Protein Homology	CDS	25704	26663	.	+	0	ID=cds-WP_001283049.1;Parent=gene-C9F05_RS04240;Dbxref=GenBank:WP_001283049.1;Name=WP_001283049.1;gbkey=CDS;gene=lsrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462954.1;locus_tag=C9F05_RS04240;product=transcriptional regulator LsrR;protein_id=WP_001283049.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	26751	28343	.	+	.	ID=gene-C9F05_RS04245;Name=lsrK;gbkey=Gene;gene=lsrK;gene_biotype=protein_coding;locus_tag=C9F05_RS04245;old_locus_tag=C9F05_04310
NZ_PYKE01000066.1	Protein Homology	CDS	26751	28343	.	+	0	ID=cds-WP_000113084.1;Parent=gene-C9F05_RS04245;Dbxref=GenBank:WP_000113084.1;Name=WP_000113084.1;Ontology_term=GO:0005975,GO:0009372,GO:0071518;gbkey=CDS;gene=lsrK;go_function=autoinducer-2 kinase activity|0071518||IEA;go_process=carbohydrate metabolic process|0005975||IEA,quorum sensing|0009372||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462953.1;locus_tag=C9F05_RS04245;product=autoinducer-2 kinase;protein_id=WP_000113084.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	28357	28707	.	+	.	ID=gene-C9F05_RS04250;Name=C9F05_RS04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04250;old_locus_tag=C9F05_04315
NZ_PYKE01000066.1	Protein Homology	CDS	28357	28707	.	+	0	ID=cds-WP_001173080.1;Parent=gene-C9F05_RS04250;Dbxref=GenBank:WP_001173080.1;Name=WP_001173080.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742380.1;locus_tag=C9F05_RS04250;product=cupin domain-containing protein;protein_id=WP_001173080.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	pseudogene	28797	28937	.	-	.	ID=gene-C9F05_RS23640;Name=C9F05_RS23640;end_range=28937,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23640;old_locus_tag=C9F05_04320;partial=true;pseudo=true
NZ_PYKE01000066.1	Protein Homology	CDS	28797	28937	.	-	0	ID=cds-C9F05_RS23640;Parent=gene-C9F05_RS23640;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0008654,GO:0008715,GO:0016020;end_range=28937,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=CDP-diacylglycerol diphosphatase activity|0008715||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462945.1;locus_tag=C9F05_RS23640;partial=true;product=CDP-diacylglycerol diphosphatase;pseudo=true;transl_table=11
NZ_PYKE01000066.1	RefSeq	pseudogene	28983	29108	.	-	.	ID=gene-C9F05_RS23645;Name=C9F05_RS23645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23645;old_locus_tag=C9F05_04325;partial=true;pseudo=true;start_range=.,28983
NZ_PYKE01000066.1	Protein Homology	CDS	28983	29108	.	-	0	ID=cds-C9F05_RS23645;Parent=gene-C9F05_RS23645;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229472.1;locus_tag=C9F05_RS23645;partial=true;product=hypothetical protein;pseudo=true;start_range=.,28983;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	29206	29928	.	-	.	ID=gene-C9F05_RS04265;Name=C9F05_RS04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04265;old_locus_tag=C9F05_04330
NZ_PYKE01000066.1	Protein Homology	CDS	29206	29928	.	-	0	ID=cds-WP_001519915.1;Parent=gene-C9F05_RS04265;Dbxref=GenBank:WP_001519915.1;Name=WP_001519915.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462949.1;locus_tag=C9F05_RS04265;product=GntR family transcriptional regulator;protein_id=WP_001519915.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	29991	31031	.	-	.	ID=gene-C9F05_RS04270;Name=C9F05_RS04270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04270;old_locus_tag=C9F05_04335
NZ_PYKE01000066.1	Protein Homology	CDS	29991	31031	.	-	0	ID=cds-WP_000557884.1;Parent=gene-C9F05_RS04270;Dbxref=GenBank:WP_000557884.1;Name=WP_000557884.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462948.1;locus_tag=C9F05_RS04270;product=ADP-ribosylglycohydrolase family protein;protein_id=WP_000557884.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	31041	32000	.	-	.	ID=gene-C9F05_RS04275;Name=C9F05_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04275;old_locus_tag=C9F05_04340
NZ_PYKE01000066.1	Protein Homology	CDS	31041	32000	.	-	0	ID=cds-WP_111742525.1;Parent=gene-C9F05_RS04275;Dbxref=GenBank:WP_111742525.1;Name=WP_111742525.1;Ontology_term=GO:0016301;gbkey=CDS;go_function=kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462947.1;locus_tag=C9F05_RS04275;product=aminoimidazole riboside kinase;protein_id=WP_111742525.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	32011	33345	.	-	.	ID=gene-C9F05_RS04280;Name=C9F05_RS04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04280;old_locus_tag=C9F05_04345
NZ_PYKE01000066.1	Protein Homology	CDS	32011	33345	.	-	0	ID=cds-WP_000777314.1;Parent=gene-C9F05_RS04280;Dbxref=GenBank:WP_000777314.1;Name=WP_000777314.1;Ontology_term=GO:0008643,GO:0055085,GO:0015293,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA,transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462946.1;locus_tag=C9F05_RS04280;product=MFS transporter;protein_id=WP_000777314.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	33610	34365	.	-	.	ID=gene-C9F05_RS04285;Name=C9F05_RS04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04285;old_locus_tag=C9F05_04350
NZ_PYKE01000066.1	Protein Homology	CDS	33610	34365	.	-	0	ID=cds-WP_000750762.1;Parent=gene-C9F05_RS04285;Dbxref=GenBank:WP_000750762.1;Name=WP_000750762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462945.1;locus_tag=C9F05_RS04285;product=CDP-diacylglycerol diphosphatase;protein_id=WP_000750762.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	34466	35455	.	-	.	ID=gene-C9F05_RS04290;Name=sbp;gbkey=Gene;gene=sbp;gene_biotype=protein_coding;locus_tag=C9F05_RS04290;old_locus_tag=C9F05_04355
NZ_PYKE01000066.1	Protein Homology	CDS	34466	35455	.	-	0	ID=cds-WP_001523784.1;Parent=gene-C9F05_RS04290;Dbxref=GenBank:WP_001523784.1;Name=WP_001523784.1;gbkey=CDS;gene=sbp;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133064.1;locus_tag=C9F05_RS04290;product=sulfate/thiosulfate ABC transporter substrate-binding protein Sbp;protein_id=WP_001523784.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	35659	36621	.	-	.	ID=gene-C9F05_RS04295;Name=pfkA;gbkey=Gene;gene=pfkA;gene_biotype=protein_coding;locus_tag=C9F05_RS04295;old_locus_tag=C9F05_04360
NZ_PYKE01000066.1	Protein Homology	CDS	35659	36621	.	-	0	ID=cds-WP_000591793.1;Parent=gene-C9F05_RS04295;Dbxref=GenBank:WP_000591793.1;Name=WP_000591793.1;Ontology_term=GO:0006002,GO:0006096,GO:0005524;gbkey=CDS;gene=pfkA;go_function=ATP binding|0005524||IEA;go_process=fructose 6-phosphate metabolic process|0006002||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014072359.1;locus_tag=C9F05_RS04295;product=6-phosphofructokinase;protein_id=WP_000591793.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	36806	37708	.	-	.	ID=gene-C9F05_RS04300;Name=fieF;gbkey=Gene;gene=fieF;gene_biotype=protein_coding;locus_tag=C9F05_RS04300;old_locus_tag=C9F05_04365
NZ_PYKE01000066.1	Protein Homology	CDS	36806	37708	.	-	0	ID=cds-WP_001077320.1;Parent=gene-C9F05_RS04300;Dbxref=GenBank:WP_001077320.1;Name=WP_001077320.1;Note=FieF%2C a metal efflux transporter%2C is a member of the CDF (cation diffusion facilitator) family of transporters.;Ontology_term=GO:0006812,GO:0055085,GO:0008324,GO:0016020;gbkey=CDS;gene=fieF;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=monoatomic cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462942.1;locus_tag=C9F05_RS04300;product=CDF family cation-efflux transporter FieF;protein_id=WP_001077320.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	37856	38356	.	-	.	ID=gene-C9F05_RS04305;Name=cpxP;gbkey=Gene;gene=cpxP;gene_biotype=protein_coding;locus_tag=C9F05_RS04305;old_locus_tag=C9F05_04370
NZ_PYKE01000066.1	Protein Homology	CDS	37856	38356	.	-	0	ID=cds-WP_001233463.1;Parent=gene-C9F05_RS04305;Dbxref=GenBank:WP_001233463.1;Name=WP_001233463.1;gbkey=CDS;gene=cpxP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462941.1;locus_tag=C9F05_RS04305;product=cell-envelope stress modulator CpxP;protein_id=WP_001233463.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	38507	39205	.	+	.	ID=gene-C9F05_RS04310;Name=cpxR;gbkey=Gene;gene=cpxR;gene_biotype=protein_coding;locus_tag=C9F05_RS04310;old_locus_tag=C9F05_04375
NZ_PYKE01000066.1	Protein Homology	CDS	38507	39205	.	+	0	ID=cds-WP_001033731.1;Parent=gene-C9F05_RS04310;Dbxref=GenBank:WP_001033731.1;Name=WP_001033731.1;gbkey=CDS;gene=cpxR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001033718.1;locus_tag=C9F05_RS04310;product=envelope stress response regulator transcription factor CpxR;protein_id=WP_001033731.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	39202	40575	.	+	.	ID=gene-C9F05_RS04315;Name=cpxA;gbkey=Gene;gene=cpxA;gene_biotype=protein_coding;locus_tag=C9F05_RS04315;old_locus_tag=C9F05_04380
NZ_PYKE01000066.1	Protein Homology	CDS	39202	40575	.	+	0	ID=cds-WP_000580402.1;Parent=gene-C9F05_RS04315;Dbxref=GenBank:WP_000580402.1;Name=WP_000580402.1;Ontology_term=GO:0007165,GO:0000155;gbkey=CDS;gene=cpxA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462939.1;locus_tag=C9F05_RS04315;product=envelope stress sensor histidine kinase CpxA;protein_id=WP_000580402.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	40623	40826	.	-	.	ID=gene-C9F05_RS04320;Name=C9F05_RS04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04320;old_locus_tag=C9F05_04385
NZ_PYKE01000066.1	Protein Homology	CDS	40623	40826	.	-	0	ID=cds-WP_000338672.1;Parent=gene-C9F05_RS04320;Dbxref=GenBank:WP_000338672.1;Name=WP_000338672.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000338671.1;locus_tag=C9F05_RS04320;product=hypothetical protein;protein_id=WP_000338672.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	40947	41342	.	-	.	ID=gene-C9F05_RS04325;Name=C9F05_RS04325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04325;old_locus_tag=C9F05_04390
NZ_PYKE01000066.1	Protein Homology	CDS	40947	41342	.	-	0	ID=cds-WP_000133442.1;Parent=gene-C9F05_RS04325;Dbxref=GenBank:WP_000133442.1;Name=WP_000133442.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462938.1;locus_tag=C9F05_RS04325;product=nuclear transport factor 2 family protein;protein_id=WP_000133442.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	41354	42043	.	-	.	ID=gene-C9F05_RS04330;Name=yiiM;gbkey=Gene;gene=yiiM;gene_biotype=protein_coding;locus_tag=C9F05_RS04330;old_locus_tag=C9F05_04395
NZ_PYKE01000066.1	Protein Homology	CDS	41354	42043	.	-	0	ID=cds-WP_023221176.1;Parent=gene-C9F05_RS04330;Dbxref=GenBank:WP_023221176.1;Name=WP_023221176.1;Ontology_term=GO:0003824,GO:0030151,GO:0030170;gbkey=CDS;gene=yiiM;go_function=catalytic activity|0003824||IEA,molybdenum ion binding|0030151||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000559227.1;locus_tag=C9F05_RS04330;product=6-hydroxyaminopurine reductase;protein_id=WP_023221176.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	42113	42733	.	-	.	ID=gene-C9F05_RS04335;Name=sodA;gbkey=Gene;gene=sodA;gene_biotype=protein_coding;locus_tag=C9F05_RS04335;old_locus_tag=C9F05_04400
NZ_PYKE01000066.1	Protein Homology	CDS	42113	42733	.	-	0	ID=cds-WP_000122632.1;Parent=gene-C9F05_RS04335;Dbxref=GenBank:WP_000122632.1;Name=WP_000122632.1;Ontology_term=GO:0006801,GO:0004784;gbkey=CDS;gene=sodA;go_function=superoxide dismutase activity|0004784||IEA;go_process=superoxide metabolic process|0006801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010345169.1;locus_tag=C9F05_RS04335;product=superoxide dismutase [Mn];protein_id=WP_000122632.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	43062	44045	.	+	.	ID=gene-C9F05_RS04340;Name=C9F05_RS04340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04340;old_locus_tag=C9F05_04405
NZ_PYKE01000066.1	Protein Homology	CDS	43062	44045	.	+	0	ID=cds-WP_000812822.1;Parent=gene-C9F05_RS04340;Dbxref=GenBank:WP_000812822.1;Name=WP_000812822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462935.1;locus_tag=C9F05_RS04340;product=TRAP transporter substrate-binding protein;protein_id=WP_000812822.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	44064	44579	.	+	.	ID=gene-C9F05_RS04345;Name=C9F05_RS04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04345;old_locus_tag=C9F05_04410
NZ_PYKE01000066.1	Protein Homology	CDS	44064	44579	.	+	0	ID=cds-WP_001091413.1;Parent=gene-C9F05_RS04345;Dbxref=GenBank:WP_001091413.1;Name=WP_001091413.1;Ontology_term=GO:0015740,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462934.1;locus_tag=C9F05_RS04345;product=TRAP transporter small permease;protein_id=WP_001091413.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	44572	45879	.	+	.	ID=gene-C9F05_RS04350;Name=C9F05_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04350;old_locus_tag=C9F05_04415
NZ_PYKE01000066.1	Protein Homology	CDS	44572	45879	.	+	0	ID=cds-WP_000566800.1;Parent=gene-C9F05_RS04350;Dbxref=GenBank:WP_000566800.1;Name=WP_000566800.1;Ontology_term=GO:0008643,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462933.1;locus_tag=C9F05_RS04350;product=TRAP transporter large permease;protein_id=WP_000566800.1;transl_table=11
NZ_PYKE01000066.1	RefSeq	gene	46037	46720	.	-	.	ID=gene-C9F05_RS04355;Name=C9F05_RS04355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04355;old_locus_tag=C9F05_04420
NZ_PYKE01000066.1	Protein Homology	CDS	46037	46720	.	-	0	ID=cds-WP_000378721.1;Parent=gene-C9F05_RS04355;Dbxref=GenBank:WP_000378721.1;Name=WP_000378721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462932.3;locus_tag=C9F05_RS04355;product=oligogalacturonate-specific porin KdgM family protein;protein_id=WP_000378721.1;transl_table=11
##sequence-region NZ_PYKE01000234.1 1 9956
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000234.1	RefSeq	region	1	9956	.	+	.	ID=NZ_PYKE01000234.1:1..9956;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000234.1	RefSeq	gene	152	601	.	+	.	ID=gene-C9F05_RS15325;Name=C9F05_RS15325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15325;old_locus_tag=C9F05_15760
NZ_PYKE01000234.1	Protein Homology	CDS	152	601	.	+	0	ID=cds-WP_001250364.1;Parent=gene-C9F05_RS15325;Dbxref=GenBank:WP_001250364.1;Name=WP_001250364.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459034.1;locus_tag=C9F05_RS15325;product=winged helix-turn-helix domain-containing protein;protein_id=WP_001250364.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	701	988	.	-	.	ID=gene-C9F05_RS15330;Name=C9F05_RS15330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15330;old_locus_tag=C9F05_15765
NZ_PYKE01000234.1	Protein Homology	CDS	701	988	.	-	0	ID=cds-WP_135370434.1;Parent=gene-C9F05_RS15330;Dbxref=GenBank:WP_135370434.1;Name=WP_135370434.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000839835.1;locus_tag=C9F05_RS15330;product=hypothetical protein;protein_id=WP_135370434.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	1027	1872	.	-	.	ID=gene-C9F05_RS15335;Name=C9F05_RS15335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15335;old_locus_tag=C9F05_15770
NZ_PYKE01000234.1	Protein Homology	CDS	1027	1872	.	-	0	ID=cds-WP_000291399.1;Parent=gene-C9F05_RS15335;Dbxref=GenBank:WP_000291399.1;Name=WP_000291399.1;Ontology_term=GO:0015036;gbkey=CDS;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459033.1;locus_tag=C9F05_RS15335;product=DsbA family protein;protein_id=WP_000291399.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	1937	2668	.	-	.	ID=gene-C9F05_RS15340;Name=bcfG;gbkey=Gene;gene=bcfG;gene_biotype=protein_coding;locus_tag=C9F05_RS15340;old_locus_tag=C9F05_15775
NZ_PYKE01000234.1	Protein Homology	CDS	1937	2668	.	-	0	ID=cds-WP_077910634.1;Parent=gene-C9F05_RS15340;Dbxref=GenBank:WP_077910634.1;Name=WP_077910634.1;gbkey=CDS;gene=bcfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459032.1;locus_tag=C9F05_RS15340;product=fimbrial chaperone BcfG;protein_id=WP_077910634.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	2634	3152	.	-	.	ID=gene-C9F05_RS15345;Name=C9F05_RS15345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15345;old_locus_tag=C9F05_15780
NZ_PYKE01000234.1	Protein Homology	CDS	2634	3152	.	-	0	ID=cds-WP_064001172.1;Parent=gene-C9F05_RS15345;Dbxref=GenBank:WP_064001172.1;Name=WP_064001172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459031.1;locus_tag=C9F05_RS15345;product=fimbrial protein BcfF;protein_id=WP_064001172.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	3168	3713	.	-	.	ID=gene-C9F05_RS15350;Name=C9F05_RS15350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15350;old_locus_tag=C9F05_15785
NZ_PYKE01000234.1	Protein Homology	CDS	3168	3713	.	-	0	ID=cds-WP_001082039.1;Parent=gene-C9F05_RS15350;Dbxref=GenBank:WP_001082039.1;Name=WP_001082039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459030.1;locus_tag=C9F05_RS15350;product=fimbrial protein BcfE;protein_id=WP_001082039.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	3714	4721	.	-	.	ID=gene-C9F05_RS15355;Name=C9F05_RS15355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15355;old_locus_tag=C9F05_15790
NZ_PYKE01000234.1	Protein Homology	CDS	3714	4721	.	-	0	ID=cds-WP_000701245.1;Parent=gene-C9F05_RS15355;Dbxref=GenBank:WP_000701245.1;Name=WP_000701245.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459029.1;locus_tag=C9F05_RS15355;product=fimbrial protein BcfD;protein_id=WP_000701245.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	4722	7343	.	-	.	ID=gene-C9F05_RS15360;Name=bcfC;gbkey=Gene;gene=bcfC;gene_biotype=protein_coding;locus_tag=C9F05_RS15360;old_locus_tag=C9F05_15795
NZ_PYKE01000234.1	Protein Homology	CDS	4722	7343	.	-	0	ID=cds-WP_135370435.1;Parent=gene-C9F05_RS15360;Dbxref=GenBank:WP_135370435.1;Name=WP_135370435.1;gbkey=CDS;gene=bcfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459028.1;locus_tag=C9F05_RS15360;product=fimbrial usher BcfC;protein_id=WP_135370435.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	7348	8034	.	-	.	ID=gene-C9F05_RS15365;Name=bcfB;gbkey=Gene;gene=bcfB;gene_biotype=protein_coding;locus_tag=C9F05_RS15365;old_locus_tag=C9F05_15800
NZ_PYKE01000234.1	Protein Homology	CDS	7348	8034	.	-	0	ID=cds-WP_000739906.1;Parent=gene-C9F05_RS15365;Dbxref=GenBank:WP_000739906.1;Name=WP_000739906.1;gbkey=CDS;gene=bcfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459027.1;locus_tag=C9F05_RS15365;product=fimbrial biogenesis chaperone BcfB;protein_id=WP_000739906.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	8135	8677	.	-	.	ID=gene-C9F05_RS15370;Name=C9F05_RS15370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15370;old_locus_tag=C9F05_15805
NZ_PYKE01000234.1	Protein Homology	CDS	8135	8677	.	-	0	ID=cds-WP_000743357.1;Parent=gene-C9F05_RS15370;Dbxref=GenBank:WP_000743357.1;Name=WP_000743357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459026.1;locus_tag=C9F05_RS15370;product=fimbrial protein BcfA;protein_id=WP_000743357.1;transl_table=11
NZ_PYKE01000234.1	RefSeq	gene	9107	9811	.	-	.	ID=gene-C9F05_RS15375;Name=C9F05_RS15375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15375;old_locus_tag=C9F05_15810
NZ_PYKE01000234.1	Protein Homology	CDS	9107	9811	.	-	0	ID=cds-WP_000738619.1;Parent=gene-C9F05_RS15375;Dbxref=GenBank:WP_000738619.1;Name=WP_000738619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459025.1;locus_tag=C9F05_RS15375;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_000738619.1;transl_table=11
##sequence-region NZ_PYKE01000082.1 1 9734
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000082.1	RefSeq	region	1	9734	.	+	.	ID=NZ_PYKE01000082.1:1..9734;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000082.1	RefSeq	gene	118	471	.	+	.	ID=gene-C9F05_RS05555;Name=C9F05_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05555;old_locus_tag=C9F05_05650
NZ_PYKE01000082.1	Protein Homology	CDS	118	471	.	+	0	ID=cds-WP_000340935.1;Parent=gene-C9F05_RS05555;Dbxref=GenBank:WP_000340935.1;Name=WP_000340935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462559.1;locus_tag=C9F05_RS05555;product=YiaA/YiaB family protein;protein_id=WP_000340935.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	494	1489	.	-	.	ID=gene-C9F05_RS05560;Name=C9F05_RS05560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05560;old_locus_tag=C9F05_05655
NZ_PYKE01000082.1	Protein Homology	CDS	494	1489	.	-	0	ID=cds-WP_021000894.1;Parent=gene-C9F05_RS05560;Dbxref=GenBank:WP_021000894.1;Name=WP_021000894.1;Ontology_term=GO:0016413,GO:0016747;gbkey=CDS;go_function=O-acetyltransferase activity|0016413||IEA,acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462558.1;locus_tag=C9F05_RS05560;product=acyltransferase;protein_id=WP_021000894.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	1655	1957	.	+	.	ID=gene-C9F05_RS05570;Name=C9F05_RS05570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05570;old_locus_tag=C9F05_05665
NZ_PYKE01000082.1	Protein Homology	CDS	1655	1957	.	+	0	ID=cds-WP_000605590.1;Parent=gene-C9F05_RS05570;Dbxref=GenBank:WP_000605590.1;Name=WP_000605590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462557.1;locus_tag=C9F05_RS05570;product=YsaB family lipoprotein;protein_id=WP_000605590.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	2096	3007	.	+	.	ID=gene-C9F05_RS05575;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=C9F05_RS05575;old_locus_tag=C9F05_05670
NZ_PYKE01000082.1	Protein Homology	CDS	2096	3007	.	+	0	ID=cds-WP_001168557.1;Parent=gene-C9F05_RS05575;Dbxref=GenBank:WP_001168557.1;Name=WP_001168557.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyQ;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462556.1;locus_tag=C9F05_RS05575;product=glycine--tRNA ligase subunit alpha;protein_id=WP_001168557.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	3017	5086	.	+	.	ID=gene-C9F05_RS05580;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=C9F05_RS05580;old_locus_tag=C9F05_05675
NZ_PYKE01000082.1	Protein Homology	CDS	3017	5086	.	+	0	ID=cds-WP_135370097.1;Parent=gene-C9F05_RS05580;Dbxref=GenBank:WP_135370097.1;Name=WP_135370097.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001291772.1;locus_tag=C9F05_RS05580;product=glycine--tRNA ligase subunit beta;protein_id=WP_135370097.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	pseudogene	5563	5976	.	+	.	ID=gene-C9F05_RS23750;Name=C9F05_RS23750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23750;partial=true;pseudo=true;start_range=.,5563
NZ_PYKE01000082.1	Protein Homology	CDS	5563	5976	.	+	0	ID=cds-C9F05_RS23750;Parent=gene-C9F05_RS23750;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0032196,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611947.1;locus_tag=C9F05_RS23750;partial=true;product=transposase;pseudo=true;start_range=.,5563;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	6118	6585	.	+	.	ID=gene-C9F05_RS05590;Name=C9F05_RS05590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05590;old_locus_tag=C9F05_05685
NZ_PYKE01000082.1	Protein Homology	CDS	6118	6585	.	+	0	ID=cds-WP_000702452.1;Parent=gene-C9F05_RS05590;Dbxref=GenBank:WP_000702452.1;Name=WP_000702452.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462554.1;locus_tag=C9F05_RS05590;product=GNAT family N-acetyltransferase;protein_id=WP_000702452.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	6763	7050	.	+	.	ID=gene-C9F05_RS05595;Name=C9F05_RS05595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05595;old_locus_tag=C9F05_05690
NZ_PYKE01000082.1	Protein Homology	CDS	6763	7050	.	+	0	ID=cds-WP_077917656.1;Parent=gene-C9F05_RS05595;Dbxref=GenBank:WP_077917656.1;Name=WP_077917656.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462553.1;locus_tag=C9F05_RS05595;product=type II toxin-antitoxin system TacA family antitoxin;protein_id=WP_077917656.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	7038	7523	.	+	.	ID=gene-C9F05_RS05600;Name=C9F05_RS05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05600;old_locus_tag=C9F05_05695
NZ_PYKE01000082.1	Protein Homology	CDS	7038	7523	.	+	0	ID=cds-WP_000533909.1;Parent=gene-C9F05_RS05600;Dbxref=GenBank:WP_000533909.1;Name=WP_000533909.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462552.1;locus_tag=C9F05_RS05600;product=GNAT family N-acetyltransferase;protein_id=WP_000533909.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	7897	8436	.	-	.	ID=gene-C9F05_RS05605;Name=cueP;gbkey=Gene;gene=cueP;gene_biotype=protein_coding;locus_tag=C9F05_RS05605;old_locus_tag=C9F05_05700
NZ_PYKE01000082.1	Protein Homology	CDS	7897	8436	.	-	0	ID=cds-WP_000047148.1;Parent=gene-C9F05_RS05605;Dbxref=GenBank:WP_000047148.1;Name=WP_000047148.1;gbkey=CDS;gene=cueP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462551.1;locus_tag=C9F05_RS05605;product=copper-binding periplasmic metallochaperone CueP;protein_id=WP_000047148.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	8609	8821	.	-	.	ID=gene-C9F05_RS05610;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=C9F05_RS05610;old_locus_tag=C9F05_05705
NZ_PYKE01000082.1	Protein Homology	CDS	8609	8821	.	-	0	ID=cds-WP_000014594.1;Parent=gene-C9F05_RS05610;Dbxref=GenBank:WP_000014594.1;Name=WP_000014594.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312468.1;locus_tag=C9F05_RS05610;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_000014594.1;transl_table=11
NZ_PYKE01000082.1	RefSeq	gene	9108	9398	.	-	.	ID=gene-C9F05_RS05615;Name=C9F05_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05615;old_locus_tag=C9F05_05710
NZ_PYKE01000082.1	Protein Homology	CDS	9108	9398	.	-	0	ID=cds-WP_000455790.1;Parent=gene-C9F05_RS05615;Dbxref=GenBank:WP_000455790.1;Name=WP_000455790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462549.1;locus_tag=C9F05_RS05615;product=HTH-type transcriptional regulator;protein_id=WP_000455790.1;transl_table=11
##sequence-region NZ_PYKE01000050.1 1 9697
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000050.1	RefSeq	region	1	9697	.	+	.	ID=NZ_PYKE01000050.1:1..9697;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000050.1	RefSeq	gene	18	1841	.	+	.	ID=gene-C9F05_RS03190;Name=C9F05_RS03190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03190;old_locus_tag=C9F05_03240
NZ_PYKE01000050.1	Protein Homology	CDS	18	1841	.	+	0	ID=cds-WP_000669887.1;Parent=gene-C9F05_RS03190;Dbxref=GenBank:WP_000669887.1;Name=WP_000669887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000669888.1;locus_tag=C9F05_RS03190;product=aryl-sulfate sulfotransferase;protein_id=WP_000669887.1;transl_table=11
NZ_PYKE01000050.1	RefSeq	gene	2038	3201	.	-	.	ID=gene-C9F05_RS03195;Name=fadA;gbkey=Gene;gene=fadA;gene_biotype=protein_coding;locus_tag=C9F05_RS03195;old_locus_tag=C9F05_03245
NZ_PYKE01000050.1	Protein Homology	CDS	2038	3201	.	-	0	ID=cds-WP_000438783.1;Parent=gene-C9F05_RS03195;Dbxref=GenBank:WP_000438783.1;Name=WP_000438783.1;Ontology_term=GO:0006631,GO:0016042,GO:0003988,GO:0005737;gbkey=CDS;gene=fadA;go_component=cytoplasm|0005737||IEA;go_function=acetyl-CoA C-acyltransferase activity|0003988||IEA;go_process=fatty acid metabolic process|0006631||IEA,lipid catabolic process|0016042||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462867.1;locus_tag=C9F05_RS03195;product=acetyl-CoA C-acyltransferase FadA;protein_id=WP_000438783.1;transl_table=11
NZ_PYKE01000050.1	RefSeq	gene	3211	5400	.	-	.	ID=gene-C9F05_RS03200;Name=fadB;gbkey=Gene;gene=fadB;gene_biotype=protein_coding;locus_tag=C9F05_RS03200;old_locus_tag=C9F05_03250
NZ_PYKE01000050.1	Protein Homology	CDS	3211	5400	.	-	0	ID=cds-WP_000966001.1;Parent=gene-C9F05_RS03200;Dbxref=GenBank:WP_000966001.1;Name=WP_000966001.1;Ontology_term=GO:0009062,GO:0003857,GO:0004165,GO:0004300,GO:0008692,GO:0036125;gbkey=CDS;gene=fadB;go_component=fatty acid beta-oxidation multienzyme complex|0036125||IEA;go_function=(3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity|0003857||IEA,delta(3)-delta(2)-enoyl-CoA isomerase activity|0004165||IEA,enoyl-CoA hydratase activity|0004300||IEA,3-hydroxybutyryl-CoA epimerase activity|0008692||IEA;go_process=fatty acid catabolic process|0009062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462868.1;locus_tag=C9F05_RS03200;product=fatty acid oxidation complex subunit alpha FadB;protein_id=WP_000966001.1;transl_table=11
NZ_PYKE01000050.1	RefSeq	gene	5590	6921	.	+	.	ID=gene-C9F05_RS03205;Name=pepQ;gbkey=Gene;gene=pepQ;gene_biotype=protein_coding;locus_tag=C9F05_RS03205;old_locus_tag=C9F05_03255
NZ_PYKE01000050.1	Protein Homology	CDS	5590	6921	.	+	0	ID=cds-WP_135370023.1;Parent=gene-C9F05_RS03205;Dbxref=GenBank:WP_135370023.1;Name=WP_135370023.1;gbkey=CDS;gene=pepQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020801804.1;locus_tag=C9F05_RS03205;product=Xaa-Pro dipeptidase;protein_id=WP_135370023.1;transl_table=11
NZ_PYKE01000050.1	RefSeq	gene	6921	7535	.	+	.	ID=gene-C9F05_RS03210;Name=C9F05_RS03210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03210;old_locus_tag=C9F05_03260
NZ_PYKE01000050.1	Protein Homology	CDS	6921	7535	.	+	0	ID=cds-WP_079958431.1;Parent=gene-C9F05_RS03210;Dbxref=GenBank:WP_079958431.1;Name=WP_079958431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462870.1;locus_tag=C9F05_RS03210;product=IMPACT family protein;protein_id=WP_079958431.1;transl_table=11
NZ_PYKE01000050.1	RefSeq	gene	7574	9025	.	+	.	ID=gene-C9F05_RS03215;Name=trkH;gbkey=Gene;gene=trkH;gene_biotype=protein_coding;locus_tag=C9F05_RS03215;old_locus_tag=C9F05_03265
NZ_PYKE01000050.1	Protein Homology	CDS	7574	9025	.	+	0	ID=cds-WP_000545688.1;Parent=gene-C9F05_RS03215;Dbxref=GenBank:WP_000545688.1;Name=WP_000545688.1;gbkey=CDS;gene=trkH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004146450.1;locus_tag=C9F05_RS03215;product=Trk system potassium transporter TrkH;protein_id=WP_000545688.1;transl_table=11
NZ_PYKE01000050.1	RefSeq	gene	9037	9582	.	+	.	ID=gene-C9F05_RS03220;Name=hemG;gbkey=Gene;gene=hemG;gene_biotype=protein_coding;locus_tag=C9F05_RS03220;old_locus_tag=C9F05_03270
NZ_PYKE01000050.1	Protein Homology	CDS	9037	9582	.	+	0	ID=cds-WP_000853982.1;Parent=gene-C9F05_RS03220;Dbxref=GenBank:WP_000853982.1;Name=WP_000853982.1;gbkey=CDS;gene=hemG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462872.1;locus_tag=C9F05_RS03220;product=menaquinone-dependent protoporphyrinogen IX dehydrogenase;protein_id=WP_000853982.1;transl_table=11
##sequence-region NZ_PYKE01000118.1 1 9657
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000118.1	RefSeq	region	1	9657	.	+	.	ID=NZ_PYKE01000118.1:1..9657;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000118.1	RefSeq	gene	1	856	.	-	.	ID=gene-C9F05_RS08645;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=C9F05_RS08645;old_locus_tag=C9F05_08875;partial=true;start_range=.,1
NZ_PYKE01000118.1	Protein Homology	CDS	1	856	.	-	0	ID=cds-WP_135370185.1;Parent=gene-C9F05_RS08645;Dbxref=GenBank:WP_135370185.1;Name=WP_135370185.1;Ontology_term=GO:0016020;gbkey=CDS;gene=rarD;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462840.1;locus_tag=C9F05_RS08645;partial=true;product=EamA family transporter RarD;protein_id=WP_135370185.1;start_range=.,1;transl_table=11
NZ_PYKE01000118.1	RefSeq	gene	900	1367	.	-	.	ID=gene-C9F05_RS08650;Name=yigI;gbkey=Gene;gene=yigI;gene_biotype=protein_coding;locus_tag=C9F05_RS08650;old_locus_tag=C9F05_08880
NZ_PYKE01000118.1	Protein Homology	CDS	900	1367	.	-	0	ID=cds-WP_001277136.1;Parent=gene-C9F05_RS08650;Dbxref=GenBank:WP_001277136.1;Name=WP_001277136.1;gbkey=CDS;gene=yigI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312777.2;locus_tag=C9F05_RS08650;product=acyl-CoA thioesterase YigI;protein_id=WP_001277136.1;transl_table=11
NZ_PYKE01000118.1	RefSeq	gene	1532	2401	.	+	.	ID=gene-C9F05_RS08655;Name=pldA;gbkey=Gene;gene=pldA;gene_biotype=protein_coding;locus_tag=C9F05_RS08655;old_locus_tag=C9F05_08885
NZ_PYKE01000118.1	Protein Homology	CDS	1532	2401	.	+	0	ID=cds-WP_001201692.1;Parent=gene-C9F05_RS08655;Dbxref=GenBank:WP_001201692.1;Name=WP_001201692.1;Ontology_term=GO:0006629,GO:0004620;gbkey=CDS;gene=pldA;go_function=phospholipase activity|0004620||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462842.1;locus_tag=C9F05_RS08655;product=phospholipase A;protein_id=WP_001201692.1;transl_table=11
NZ_PYKE01000118.1	RefSeq	gene	2485	4314	.	+	.	ID=gene-C9F05_RS08660;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=C9F05_RS08660;old_locus_tag=C9F05_08890
NZ_PYKE01000118.1	Protein Homology	CDS	2485	4314	.	+	0	ID=cds-WP_001533487.1;Parent=gene-C9F05_RS08660;Dbxref=GenBank:WP_001533487.1;Name=WP_001533487.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=recQ;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026263.3;locus_tag=C9F05_RS08660;product=ATP-dependent DNA helicase RecQ;protein_id=WP_001533487.1;transl_table=11
NZ_PYKE01000118.1	RefSeq	gene	4378	4998	.	+	.	ID=gene-C9F05_RS08665;Name=rhtC;gbkey=Gene;gene=rhtC;gene_biotype=protein_coding;locus_tag=C9F05_RS08665;old_locus_tag=C9F05_08895
NZ_PYKE01000118.1	Protein Homology	CDS	4378	4998	.	+	0	ID=cds-WP_000980080.1;Parent=gene-C9F05_RS08665;Dbxref=GenBank:WP_000980080.1;Name=WP_000980080.1;Ontology_term=GO:0006865;gbkey=CDS;gene=rhtC;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462844.1;locus_tag=C9F05_RS08665;product=threonine export protein RhtC;protein_id=WP_000980080.1;transl_table=11
NZ_PYKE01000118.1	RefSeq	gene	5038	5658	.	-	.	ID=gene-C9F05_RS08670;Name=rhtB;gbkey=Gene;gene=rhtB;gene_biotype=protein_coding;locus_tag=C9F05_RS08670;old_locus_tag=C9F05_08900
NZ_PYKE01000118.1	Protein Homology	CDS	5038	5658	.	-	0	ID=cds-WP_000142521.1;Parent=gene-C9F05_RS08670;Dbxref=GenBank:WP_000142521.1;Name=WP_000142521.1;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;gene=rhtB;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462845.1;locus_tag=C9F05_RS08670;product=homoserine/homoserine lactone efflux protein;protein_id=WP_000142521.1;transl_table=11
NZ_PYKE01000118.1	RefSeq	gene	5769	6785	.	+	.	ID=gene-C9F05_RS08675;Name=pldB;gbkey=Gene;gene=pldB;gene_biotype=protein_coding;locus_tag=C9F05_RS08675;old_locus_tag=C9F05_08905
NZ_PYKE01000118.1	Protein Homology	CDS	5769	6785	.	+	0	ID=cds-WP_000487685.1;Parent=gene-C9F05_RS08675;Dbxref=GenBank:WP_000487685.1;Name=WP_000487685.1;gbkey=CDS;gene=pldB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462846.1;locus_tag=C9F05_RS08675;product=lysophospholipase L2;protein_id=WP_000487685.1;transl_table=11
NZ_PYKE01000118.1	RefSeq	gene	6801	7601	.	+	.	ID=gene-C9F05_RS08680;Name=yigL;gbkey=Gene;gene=yigL;gene_biotype=protein_coding;locus_tag=C9F05_RS08680;old_locus_tag=C9F05_08910
NZ_PYKE01000118.1	Protein Homology	CDS	6801	7601	.	+	0	ID=cds-WP_000285338.1;Parent=gene-C9F05_RS08680;Dbxref=GenBank:WP_000285338.1;Name=WP_000285338.1;gbkey=CDS;gene=yigL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462847.1;locus_tag=C9F05_RS08680;product=sugar/pyridoxal phosphate phosphatase YigL;protein_id=WP_000285338.1;transl_table=11
NZ_PYKE01000118.1	RefSeq	gene	7682	8581	.	+	.	ID=gene-C9F05_RS08685;Name=C9F05_RS08685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08685;old_locus_tag=C9F05_08915
NZ_PYKE01000118.1	Protein Homology	CDS	7682	8581	.	+	0	ID=cds-WP_001196257.1;Parent=gene-C9F05_RS08685;Dbxref=GenBank:WP_001196257.1;Name=WP_001196257.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462848.1;locus_tag=C9F05_RS08685;product=carboxylate/amino acid/amine transporter;protein_id=WP_001196257.1;transl_table=11
NZ_PYKE01000118.1	RefSeq	gene	8469	9422	.	-	.	ID=gene-C9F05_RS08690;Name=metR;gbkey=Gene;gene=metR;gene_biotype=protein_coding;locus_tag=C9F05_RS08690;old_locus_tag=C9F05_08920
NZ_PYKE01000118.1	Protein Homology	CDS	8469	9422	.	-	0	ID=cds-WP_000569786.1;Parent=gene-C9F05_RS08690;Dbxref=GenBank:WP_000569786.1;Name=WP_000569786.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=metR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462849.1;locus_tag=C9F05_RS08690;product=HTH-type transcriptional regulator MetR;protein_id=WP_000569786.1;transl_table=11
##sequence-region NZ_PYKE01000240.1 1 9497
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000240.1	RefSeq	region	1	9497	.	+	.	ID=NZ_PYKE01000240.1:1..9497;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000240.1	RefSeq	gene	182	1837	.	-	.	ID=gene-C9F05_RS15425;Name=C9F05_RS15425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15425;old_locus_tag=C9F05_15860
NZ_PYKE01000240.1	Protein Homology	CDS	182	1837	.	-	0	ID=cds-WP_001081947.1;Parent=gene-C9F05_RS15425;Dbxref=GenBank:WP_001081947.1;Name=WP_001081947.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460581.1;locus_tag=C9F05_RS15425;product=glucan biosynthesis protein D;protein_id=WP_001081947.1;transl_table=11
NZ_PYKE01000240.1	RefSeq	gene	2057	3565	.	-	.	ID=gene-C9F05_RS15430;Name=C9F05_RS15430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15430;old_locus_tag=C9F05_15865
NZ_PYKE01000240.1	Protein Homology	CDS	2057	3565	.	-	0	ID=cds-WP_000933978.1;Parent=gene-C9F05_RS15430;Dbxref=GenBank:WP_000933978.1;Name=WP_000933978.1;Ontology_term=GO:0016298,GO:0052689;gbkey=CDS;go_function=lipase activity|0016298||IEA,carboxylic ester hydrolase activity|0052689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460582.1;locus_tag=C9F05_RS15430;product=carboxylesterase/lipase family protein;protein_id=WP_000933978.1;transl_table=11
NZ_PYKE01000240.1	RefSeq	gene	3614	4957	.	-	.	ID=gene-C9F05_RS15435;Name=hglS;gbkey=Gene;gene=hglS;gene_biotype=protein_coding;gene_synonym=ydcJ;locus_tag=C9F05_RS15435;old_locus_tag=C9F05_15870
NZ_PYKE01000240.1	Protein Homology	CDS	3614	4957	.	-	0	ID=cds-WP_000024086.1;Parent=gene-C9F05_RS15435;Dbxref=GenBank:WP_000024086.1;Name=WP_000024086.1;Ontology_term=GO:0051213;gbkey=CDS;gene=hglS;go_function=dioxygenase activity|0051213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460583.1;locus_tag=C9F05_RS15435;product=2-oxoadipate dioxygenase/decarboxylase HglS;protein_id=WP_000024086.1;transl_table=11
NZ_PYKE01000240.1	RefSeq	gene	5250	6173	.	+	.	ID=gene-C9F05_RS15440;Name=C9F05_RS15440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15440;old_locus_tag=C9F05_15875
NZ_PYKE01000240.1	Protein Homology	CDS	5250	6173	.	+	0	ID=cds-WP_000414259.1;Parent=gene-C9F05_RS15440;Dbxref=GenBank:WP_000414259.1;Name=WP_000414259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460584.1;locus_tag=C9F05_RS15440;product=LysR substrate-binding domain-containing protein;protein_id=WP_000414259.1;transl_table=11
NZ_PYKE01000240.1	RefSeq	gene	6234	7859	.	-	.	ID=gene-C9F05_RS15445;Name=C9F05_RS15445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15445;old_locus_tag=C9F05_15880
NZ_PYKE01000240.1	Protein Homology	CDS	6234	7859	.	-	0	ID=cds-WP_061372437.1;Parent=gene-C9F05_RS15445;Dbxref=GenBank:WP_061372437.1;Name=WP_061372437.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460585.2;locus_tag=C9F05_RS15445;product=methyl-accepting chemotaxis protein;protein_id=WP_061372437.1;transl_table=11
NZ_PYKE01000240.1	RefSeq	gene	8028	9146	.	-	.	ID=gene-C9F05_RS15455;Name=C9F05_RS15455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15455;old_locus_tag=C9F05_15890
NZ_PYKE01000240.1	Protein Homology	CDS	8028	9146	.	-	0	ID=cds-WP_135370438.1;Parent=gene-C9F05_RS15455;Dbxref=GenBank:WP_135370438.1;Name=WP_135370438.1;Ontology_term=GO:0004022,GO:0008270,GO:0051903;gbkey=CDS;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,zinc ion binding|0008270||IEA,S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity|0051903||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460586.1;locus_tag=C9F05_RS15455;product=S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase;protein_id=WP_135370438.1;transl_table=11
NZ_PYKE01000240.1	RefSeq	gene	9178	9453	.	-	.	ID=gene-C9F05_RS15460;Name=C9F05_RS15460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15460;old_locus_tag=C9F05_15895
NZ_PYKE01000240.1	Protein Homology	CDS	9178	9453	.	-	0	ID=cds-WP_001120770.1;Parent=gene-C9F05_RS15460;Dbxref=GenBank:WP_001120770.1;Name=WP_001120770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460587.1;locus_tag=C9F05_RS15460;product=metal/formaldehyde-sensitive transcriptional repressor;protein_id=WP_001120770.1;transl_table=11
##sequence-region NZ_PYKE01000250.1 1 46702
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000250.1	RefSeq	region	1	46702	.	+	.	ID=NZ_PYKE01000250.1:1..46702;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000250.1	RefSeq	gene	206	2197	.	+	.	ID=gene-C9F05_RS16210;Name=cirA;gbkey=Gene;gene=cirA;gene_biotype=protein_coding;locus_tag=C9F05_RS16210;old_locus_tag=C9F05_16665
NZ_PYKE01000250.1	Protein Homology	CDS	206	2197	.	+	0	ID=cds-WP_000488252.1;Parent=gene-C9F05_RS16210;Dbxref=GenBank:WP_000488252.1;Name=WP_000488252.1;gbkey=CDS;gene=cirA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461144.1;locus_tag=C9F05_RS16210;product=catecholate siderophore receptor CirA;protein_id=WP_000488252.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	2241	3563	.	-	.	ID=gene-C9F05_RS16215;Name=C9F05_RS16215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16215;old_locus_tag=C9F05_16670
NZ_PYKE01000250.1	Protein Homology	CDS	2241	3563	.	-	0	ID=cds-WP_000023807.1;Parent=gene-C9F05_RS16215;Dbxref=GenBank:WP_000023807.1;Name=WP_000023807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461143.1;locus_tag=C9F05_RS16215;product=MFS transporter;protein_id=WP_000023807.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	3596	4483	.	-	.	ID=gene-C9F05_RS16220;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=C9F05_RS16220;old_locus_tag=C9F05_16675
NZ_PYKE01000250.1	Protein Homology	CDS	3596	4483	.	-	0	ID=cds-WP_058108583.1;Parent=gene-C9F05_RS16220;Dbxref=GenBank:WP_058108583.1;Name=WP_058108583.1;Ontology_term=GO:0006564,GO:0036424;gbkey=CDS;gene=serB;go_function=L-phosphoserine phosphatase activity|0036424||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461142.1;locus_tag=C9F05_RS16220;product=phosphoserine phosphatase SerB;protein_id=WP_058108583.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	4700	6067	.	+	.	ID=gene-C9F05_RS16225;Name=C9F05_RS16225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16225;old_locus_tag=C9F05_16680
NZ_PYKE01000250.1	Protein Homology	CDS	4700	6067	.	+	0	ID=cds-WP_023201132.1;Parent=gene-C9F05_RS16225;Dbxref=GenBank:WP_023201132.1;Name=WP_023201132.1;Ontology_term=GO:0006094,GO:0003941;gbkey=CDS;go_function=L-serine ammonia-lyase activity|0003941||IEA;go_process=gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461141.1;locus_tag=C9F05_RS16225;product=L-serine ammonia-lyase;protein_id=WP_023201132.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	6072	6461	.	+	.	ID=gene-C9F05_RS16230;Name=C9F05_RS16230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16230;old_locus_tag=C9F05_16685
NZ_PYKE01000250.1	Protein Homology	CDS	6072	6461	.	+	0	ID=cds-WP_000876817.1;Parent=gene-C9F05_RS16230;Dbxref=GenBank:WP_000876817.1;Name=WP_000876817.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461140.1;locus_tag=C9F05_RS16230;product=helix-turn-helix domain-containing protein;protein_id=WP_000876817.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	6450	7307	.	-	.	ID=gene-C9F05_RS16235;Name=fghA;gbkey=Gene;gene=fghA;gene_biotype=protein_coding;locus_tag=C9F05_RS16235;old_locus_tag=C9F05_16690
NZ_PYKE01000250.1	Protein Homology	CDS	6450	7307	.	-	0	ID=cds-WP_135370460.1;Parent=gene-C9F05_RS16235;Dbxref=GenBank:WP_135370460.1;Name=WP_135370460.1;Ontology_term=GO:0046294,GO:0018738;gbkey=CDS;gene=fghA;go_function=S-formylglutathione hydrolase activity|0018738||IEA;go_process=formaldehyde catabolic process|0046294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461139.2;locus_tag=C9F05_RS16235;product=S-formylglutathione hydrolase;protein_id=WP_135370460.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	7637	8305	.	+	.	ID=gene-C9F05_RS16240;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=C9F05_RS16240;old_locus_tag=C9F05_16700
NZ_PYKE01000250.1	Protein Homology	CDS	7637	8305	.	+	0	ID=cds-WP_001139611.1;Parent=gene-C9F05_RS16240;Dbxref=GenBank:WP_001139611.1;Name=WP_001139611.1;Ontology_term=GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461138.1;locus_tag=C9F05_RS16240;product=GTP cyclohydrolase I FolE;protein_id=WP_001139611.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	8320	9462	.	+	.	ID=gene-C9F05_RS16245;Name=yeiB;gbkey=Gene;gene=yeiB;gene_biotype=protein_coding;locus_tag=C9F05_RS16245;old_locus_tag=C9F05_16705
NZ_PYKE01000250.1	Protein Homology	CDS	8320	9462	.	+	0	ID=cds-WP_001518079.1;Parent=gene-C9F05_RS16245;Dbxref=GenBank:WP_001518079.1;Name=WP_001518079.1;gbkey=CDS;gene=yeiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461137.1;locus_tag=C9F05_RS16245;product=DUF418 domain-containing protein YeiB;protein_id=WP_001518079.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	9612	10634	.	+	.	ID=gene-C9F05_RS16250;Name=galS;gbkey=Gene;gene=galS;gene_biotype=protein_coding;locus_tag=C9F05_RS16250;old_locus_tag=C9F05_16710
NZ_PYKE01000250.1	Protein Homology	CDS	9612	10634	.	+	0	ID=cds-WP_000628634.1;Parent=gene-C9F05_RS16250;Dbxref=GenBank:WP_000628634.1;Name=WP_000628634.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=galS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461136.1;locus_tag=C9F05_RS16250;product=HTH-type transcriptional regulator GalS;protein_id=WP_000628634.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	11133	12131	.	+	.	ID=gene-C9F05_RS16255;Name=mglB;gbkey=Gene;gene=mglB;gene_biotype=protein_coding;locus_tag=C9F05_RS16255;old_locus_tag=C9F05_16715
NZ_PYKE01000250.1	Protein Homology	CDS	11133	12131	.	+	0	ID=cds-WP_023238532.1;Parent=gene-C9F05_RS16255;Dbxref=GenBank:WP_023238532.1;Name=WP_023238532.1;Ontology_term=GO:0030246;gbkey=CDS;gene=mglB;go_function=carbohydrate binding|0030246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461135.1;locus_tag=C9F05_RS16255;product=galactose/glucose ABC transporter substrate-binding protein MglB;protein_id=WP_023238532.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	12265	13785	.	+	.	ID=gene-C9F05_RS16260;Name=mglA;gbkey=Gene;gene=mglA;gene_biotype=protein_coding;locus_tag=C9F05_RS16260;old_locus_tag=C9F05_16720
NZ_PYKE01000250.1	Protein Homology	CDS	12265	13785	.	+	0	ID=cds-WP_000535913.1;Parent=gene-C9F05_RS16260;Dbxref=GenBank:WP_000535913.1;Name=WP_000535913.1;Ontology_term=GO:0008643,GO:0005524,GO:0043211,GO:0016020;gbkey=CDS;gene=mglA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type carbohydrate transporter activity|0043211||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020883197.1;locus_tag=C9F05_RS16260;product=galactose/methyl galactoside ABC transporter ATP-binding protein MglA;protein_id=WP_000535913.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	13801	14811	.	+	.	ID=gene-C9F05_RS16265;Name=mglC;gbkey=Gene;gene=mglC;gene_biotype=protein_coding;locus_tag=C9F05_RS16265;old_locus_tag=C9F05_16725
NZ_PYKE01000250.1	Protein Homology	CDS	13801	14811	.	+	0	ID=cds-WP_001275101.1;Parent=gene-C9F05_RS16265;Dbxref=GenBank:WP_001275101.1;Name=WP_001275101.1;Ontology_term=GO:0008643,GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mglC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129205.1;locus_tag=C9F05_RS16265;product=galactose/methyl galactoside ABC transporter permease MglC;protein_id=WP_001275101.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	14886	16121	.	-	.	ID=gene-C9F05_RS16270;Name=preA;gbkey=Gene;gene=preA;gene_biotype=protein_coding;locus_tag=C9F05_RS16270;old_locus_tag=C9F05_16730
NZ_PYKE01000250.1	Protein Homology	CDS	14886	16121	.	-	0	ID=cds-WP_000956095.1;Parent=gene-C9F05_RS16270;Dbxref=GenBank:WP_000956095.1;Name=WP_000956095.1;Ontology_term=GO:0006210,GO:0006212,GO:0017113;gbkey=CDS;gene=preA;go_function=dihydropyrimidine dehydrogenase (NADP+) activity|0017113||IEA;go_process=thymine catabolic process|0006210||IEA,uracil catabolic process|0006212||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461132.1;locus_tag=C9F05_RS16270;product=NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;protein_id=WP_000956095.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	16115	17356	.	-	.	ID=gene-C9F05_RS16275;Name=C9F05_RS16275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16275;old_locus_tag=C9F05_16735
NZ_PYKE01000250.1	Protein Homology	CDS	16115	17356	.	-	0	ID=cds-WP_135370461.1;Parent=gene-C9F05_RS16275;Dbxref=GenBank:WP_135370461.1;Name=WP_135370461.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461131.1;locus_tag=C9F05_RS16275;product=NAD(P)-dependent oxidoreductase;protein_id=WP_135370461.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	17561	17806	.	-	.	ID=gene-C9F05_RS16280;Name=C9F05_RS16280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16280;old_locus_tag=C9F05_16740
NZ_PYKE01000250.1	Protein Homology	CDS	17561	17806	.	-	0	ID=cds-WP_000605187.1;Parent=gene-C9F05_RS16280;Dbxref=GenBank:WP_000605187.1;Name=WP_000605187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461130.1;locus_tag=C9F05_RS16280;product=DUF2542 family protein;protein_id=WP_000605187.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	17803	18522	.	-	.	ID=gene-C9F05_RS16285;Name=sanA;gbkey=Gene;gene=sanA;gene_biotype=protein_coding;locus_tag=C9F05_RS16285;old_locus_tag=C9F05_16745
NZ_PYKE01000250.1	Protein Homology	CDS	17803	18522	.	-	0	ID=cds-WP_000920081.1;Parent=gene-C9F05_RS16285;Dbxref=GenBank:WP_000920081.1;Name=WP_000920081.1;gbkey=CDS;gene=sanA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461129.1;locus_tag=C9F05_RS16285;product=outer membrane permeability protein SanA;protein_id=WP_000920081.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	18699	19583	.	-	.	ID=gene-C9F05_RS16290;Name=cdd;gbkey=Gene;gene=cdd;gene_biotype=protein_coding;locus_tag=C9F05_RS16290;old_locus_tag=C9F05_16750
NZ_PYKE01000250.1	Protein Homology	CDS	18699	19583	.	-	0	ID=cds-WP_000553526.1;Parent=gene-C9F05_RS16290;Dbxref=GenBank:WP_000553526.1;Name=WP_000553526.1;Ontology_term=GO:0008655,GO:0004126,GO:0008270;gbkey=CDS;gene=cdd;go_function=cytidine deaminase activity|0004126||IEA,zinc ion binding|0008270||IEA;go_process=pyrimidine-containing compound salvage|0008655||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461128.1;locus_tag=C9F05_RS16290;product=cytidine deaminase;protein_id=WP_000553526.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	19737	20432	.	-	.	ID=gene-C9F05_RS16295;Name=C9F05_RS16295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16295;old_locus_tag=C9F05_16755
NZ_PYKE01000250.1	Protein Homology	CDS	19737	20432	.	-	0	ID=cds-WP_135370462.1;Parent=gene-C9F05_RS16295;Dbxref=GenBank:WP_135370462.1;Name=WP_135370462.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461127.1;locus_tag=C9F05_RS16295;product=CidB/LrgB family autolysis modulator;protein_id=WP_135370462.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	20429	20827	.	-	.	ID=gene-C9F05_RS16300;Name=C9F05_RS16300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16300;old_locus_tag=C9F05_16760
NZ_PYKE01000250.1	Protein Homology	CDS	20429	20827	.	-	0	ID=cds-WP_000045719.1;Parent=gene-C9F05_RS16300;Dbxref=GenBank:WP_000045719.1;Name=WP_000045719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461126.1;locus_tag=C9F05_RS16300;product=CidA/LrgA family protein;protein_id=WP_000045719.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	20959	21867	.	-	.	ID=gene-C9F05_RS16305;Name=C9F05_RS16305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16305;old_locus_tag=C9F05_16765
NZ_PYKE01000250.1	Protein Homology	CDS	20959	21867	.	-	0	ID=cds-WP_000024658.1;Parent=gene-C9F05_RS16305;Dbxref=GenBank:WP_000024658.1;Name=WP_000024658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461125.1;locus_tag=C9F05_RS16305;product=LysR substrate-binding domain-containing protein;protein_id=WP_000024658.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	21993	23351	.	+	.	ID=gene-C9F05_RS16310;Name=mhbT;gbkey=Gene;gene=mhbT;gene_biotype=protein_coding;locus_tag=C9F05_RS16310;old_locus_tag=C9F05_16770
NZ_PYKE01000250.1	Protein Homology	CDS	21993	23351	.	+	0	ID=cds-WP_023201136.1;Parent=gene-C9F05_RS16310;Dbxref=GenBank:WP_023201136.1;Name=WP_023201136.1;gbkey=CDS;gene=mhbT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461124.1;locus_tag=C9F05_RS16310;product=3-hydroxybenzoate transporter MhbT;protein_id=WP_023201136.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	23363	24400	.	+	.	ID=gene-C9F05_RS16315;Name=gtdA;gbkey=Gene;gene=gtdA;gene_biotype=protein_coding;locus_tag=C9F05_RS16315;old_locus_tag=C9F05_16775
NZ_PYKE01000250.1	Protein Homology	CDS	23363	24400	.	+	0	ID=cds-WP_001289857.1;Parent=gene-C9F05_RS16315;Dbxref=GenBank:WP_001289857.1;Name=WP_001289857.1;Ontology_term=GO:0047922;gbkey=CDS;gene=gtdA;go_function=gentisate 1%2C2-dioxygenase activity|0047922||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461123.1;locus_tag=C9F05_RS16315;product=gentisate 1%2C2-dioxygenase;protein_id=WP_001289857.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	24418	25119	.	+	.	ID=gene-C9F05_RS16320;Name=C9F05_RS16320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16320;old_locus_tag=C9F05_16780
NZ_PYKE01000250.1	Protein Homology	CDS	24418	25119	.	+	0	ID=cds-WP_000170621.1;Parent=gene-C9F05_RS16320;Dbxref=GenBank:WP_000170621.1;Name=WP_000170621.1;Ontology_term=GO:0003824,GO:0016787;gbkey=CDS;go_function=catalytic activity|0003824||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461122.1;locus_tag=C9F05_RS16320;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_000170621.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	25128	25772	.	+	.	ID=gene-C9F05_RS16325;Name=maiA;gbkey=Gene;gene=maiA;gene_biotype=protein_coding;locus_tag=C9F05_RS16325;old_locus_tag=C9F05_16785
NZ_PYKE01000250.1	Protein Homology	CDS	25128	25772	.	+	0	ID=cds-WP_000781195.1;Parent=gene-C9F05_RS16325;Dbxref=GenBank:WP_000781195.1;Name=WP_000781195.1;Ontology_term=GO:0006559,GO:0006572,GO:0016034,GO:0005737;gbkey=CDS;gene=maiA;go_component=cytoplasm|0005737||IEA;go_function=maleylacetoacetate isomerase activity|0016034||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA,L-tyrosine catabolic process|0006572||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461121.1;locus_tag=C9F05_RS16325;product=maleylacetoacetate isomerase;protein_id=WP_000781195.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	25787	26980	.	+	.	ID=gene-C9F05_RS16330;Name=C9F05_RS16330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16330;old_locus_tag=C9F05_16790
NZ_PYKE01000250.1	Protein Homology	CDS	25787	26980	.	+	0	ID=cds-WP_000150103.1;Parent=gene-C9F05_RS16330;Dbxref=GenBank:WP_000150103.1;Name=WP_000150103.1;Ontology_term=GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461120.1;locus_tag=C9F05_RS16330;product=3-hydroxybenzoate 6-monooxygenase;protein_id=WP_000150103.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	27089	28027	.	+	.	ID=gene-C9F05_RS16335;Name=dusC;gbkey=Gene;gene=dusC;gene_biotype=protein_coding;locus_tag=C9F05_RS16335;old_locus_tag=C9F05_16795
NZ_PYKE01000250.1	Protein Homology	CDS	27089	28027	.	+	0	ID=cds-WP_001264832.1;Parent=gene-C9F05_RS16335;Dbxref=GenBank:WP_001264832.1;Name=WP_001264832.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusC;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461119.1;locus_tag=C9F05_RS16335;product=tRNA dihydrouridine(16) synthase DusC;protein_id=WP_001264832.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	28085	28168	.	-	.	ID=gene-C9F05_RS24070;Name=yohP;gbkey=Gene;gene=yohP;gene_biotype=protein_coding;locus_tag=C9F05_RS24070;old_locus_tag=C9F05_16800
NZ_PYKE01000250.1	Protein Homology	CDS	28085	28168	.	-	0	ID=cds-WP_000698460.1;Parent=gene-C9F05_RS24070;Dbxref=GenBank:WP_000698460.1;Name=WP_000698460.1;gbkey=CDS;gene=yohP;inference=COORDINATES: protein motif:HMM:NF011345.0;locus_tag=C9F05_RS24070;product=small membrane protein YohP;protein_id=WP_000698460.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	28486	29922	.	+	.	ID=gene-C9F05_RS16345;Name=mdtQ;gbkey=Gene;gene=mdtQ;gene_biotype=protein_coding;locus_tag=C9F05_RS16345;old_locus_tag=C9F05_16805
NZ_PYKE01000250.1	Protein Homology	CDS	28486	29922	.	+	0	ID=cds-WP_001081457.1;Parent=gene-C9F05_RS16345;Dbxref=GenBank:WP_001081457.1;Name=WP_001081457.1;Ontology_term=GO:0055085,GO:0015562,GO:0016020;gbkey=CDS;gene=mdtQ;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461117.1;locus_tag=C9F05_RS16345;product=multidrug resistance outer membrane protein MdtQ;protein_id=WP_001081457.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	29988	30749	.	+	.	ID=gene-C9F05_RS16350;Name=C9F05_RS16350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16350;old_locus_tag=C9F05_16810
NZ_PYKE01000250.1	Protein Homology	CDS	29988	30749	.	+	0	ID=cds-WP_000169608.1;Parent=gene-C9F05_RS16350;Dbxref=GenBank:WP_000169608.1;Name=WP_000169608.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461116.1;locus_tag=C9F05_RS16350;product=SDR family oxidoreductase;protein_id=WP_000169608.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	30798	31367	.	-	.	ID=gene-C9F05_RS16355;Name=C9F05_RS16355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16355;old_locus_tag=C9F05_16815
NZ_PYKE01000250.1	Protein Homology	CDS	30798	31367	.	-	0	ID=cds-WP_001523476.1;Parent=gene-C9F05_RS16355;Dbxref=GenBank:WP_001523476.1;Name=WP_001523476.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001669449.1;locus_tag=C9F05_RS16355;product=DedA family protein;protein_id=WP_001523476.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	31526	32113	.	+	.	ID=gene-C9F05_RS16360;Name=C9F05_RS16360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16360;old_locus_tag=C9F05_16820
NZ_PYKE01000250.1	Protein Homology	CDS	31526	32113	.	+	0	ID=cds-WP_001017057.1;Parent=gene-C9F05_RS16360;Dbxref=GenBank:WP_001017057.1;Name=WP_001017057.1;Ontology_term=GO:0016192,GO:0031267;gbkey=CDS;go_function=small GTPase binding|0031267||IEA;go_process=vesicle-mediated transport|0016192||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014170891.1;locus_tag=C9F05_RS16360;product=Yip1 family protein;protein_id=WP_001017057.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	32279	33226	.	+	.	ID=gene-C9F05_RS16365;Name=pbpG;gbkey=Gene;gene=pbpG;gene_biotype=protein_coding;locus_tag=C9F05_RS16365;old_locus_tag=C9F05_16830
NZ_PYKE01000250.1	Protein Homology	CDS	32279	33226	.	+	0	ID=cds-WP_000911555.1;Parent=gene-C9F05_RS16365;Dbxref=GenBank:WP_000911555.1;Name=WP_000911555.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=pbpG;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461113.1;locus_tag=C9F05_RS16365;product=D-alanyl-D-alanine endopeptidase;protein_id=WP_000911555.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	33285	35015	.	-	.	ID=gene-C9F05_RS16370;Name=dld;gbkey=Gene;gene=dld;gene_biotype=protein_coding;locus_tag=C9F05_RS16370;old_locus_tag=C9F05_16835
NZ_PYKE01000250.1	Protein Homology	CDS	33285	35015	.	-	0	ID=cds-WP_135370463.1;Parent=gene-C9F05_RS16370;Dbxref=GenBank:WP_135370463.1;Name=WP_135370463.1;Ontology_term=GO:0006089,GO:0016901;gbkey=CDS;gene=dld;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C quinone or similar compound as acceptor|0016901||IEA;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461112.1;locus_tag=C9F05_RS16370;product=D-lactate dehydrogenase;protein_id=WP_135370463.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	35282	37579	.	+	.	ID=gene-C9F05_RS16375;Name=bglX;gbkey=Gene;gene=bglX;gene_biotype=protein_coding;locus_tag=C9F05_RS16375;old_locus_tag=C9F05_16840
NZ_PYKE01000250.1	Protein Homology	CDS	35282	37579	.	+	0	ID=cds-WP_000871554.1;Parent=gene-C9F05_RS16375;Dbxref=GenBank:WP_000871554.1;Name=WP_000871554.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=bglX;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461111.1;locus_tag=C9F05_RS16375;product=beta-glucosidase BglX;protein_id=WP_000871554.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	37760	38677	.	+	.	ID=gene-C9F05_RS16380;Name=osmF;gbkey=Gene;gene=osmF;gene_biotype=protein_coding;locus_tag=C9F05_RS16380;old_locus_tag=C9F05_16845
NZ_PYKE01000250.1	Protein Homology	CDS	37760	38677	.	+	0	ID=cds-WP_000155876.1;Parent=gene-C9F05_RS16380;Dbxref=GenBank:WP_000155876.1;Name=WP_000155876.1;Ontology_term=GO:0031460,GO:0022857;gbkey=CDS;gene=osmF;go_function=transmembrane transporter activity|0022857||IEA;go_process=glycine betaine transport|0031460||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461110.1;locus_tag=C9F05_RS16380;product=glycine betaine ABC transporter substrate-binding protein OsmF;protein_id=WP_000155876.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	38681	39850	.	+	.	ID=gene-C9F05_RS16385;Name=C9F05_RS16385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16385;old_locus_tag=C9F05_16850
NZ_PYKE01000250.1	Protein Homology	CDS	38681	39850	.	+	0	ID=cds-WP_001278121.1;Parent=gene-C9F05_RS16385;Dbxref=GenBank:WP_001278121.1;Name=WP_001278121.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461109.1;locus_tag=C9F05_RS16385;product=ABC transporter permease;protein_id=WP_001278121.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	39843	40790	.	+	.	ID=gene-C9F05_RS16390;Name=C9F05_RS16390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16390;old_locus_tag=C9F05_16855
NZ_PYKE01000250.1	Protein Homology	CDS	39843	40790	.	+	0	ID=cds-WP_135370464.1;Parent=gene-C9F05_RS16390;Dbxref=GenBank:WP_135370464.1;Name=WP_135370464.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461108.1;locus_tag=C9F05_RS16390;product=ABC transporter ATP-binding protein;protein_id=WP_135370464.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	40774	41505	.	+	.	ID=gene-C9F05_RS16395;Name=C9F05_RS16395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16395;old_locus_tag=C9F05_16860
NZ_PYKE01000250.1	Protein Homology	CDS	40774	41505	.	+	0	ID=cds-WP_000824854.1;Parent=gene-C9F05_RS16395;Dbxref=GenBank:WP_000824854.1;Name=WP_000824854.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461107.1;locus_tag=C9F05_RS16395;product=ABC transporter permease;protein_id=WP_000824854.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	41486	41593	.	-	.	ID=gene-C9F05_RS16400;Name=C9F05_RS16400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16400;old_locus_tag=C9F05_16865
NZ_PYKE01000250.1	Protein Homology	CDS	41486	41593	.	-	0	ID=cds-WP_001261696.1;Parent=gene-C9F05_RS16400;Dbxref=GenBank:WP_001261696.1;Name=WP_001261696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461106.1;locus_tag=C9F05_RS16400;product=protein YohO;protein_id=WP_001261696.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	41653	42384	.	-	.	ID=gene-C9F05_RS16405;Name=mlrA;gbkey=Gene;gene=mlrA;gene_biotype=protein_coding;locus_tag=C9F05_RS16405;old_locus_tag=C9F05_16870
NZ_PYKE01000250.1	Protein Homology	CDS	41653	42384	.	-	0	ID=cds-WP_001240418.1;Parent=gene-C9F05_RS16405;Dbxref=GenBank:WP_001240418.1;Name=WP_001240418.1;gbkey=CDS;gene=mlrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461105.1;locus_tag=C9F05_RS16405;product=HTH-type transcriptional regulator MlrA;protein_id=WP_001240418.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	42607	44292	.	+	.	ID=gene-C9F05_RS16410;Name=C9F05_RS16410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16410;old_locus_tag=C9F05_16875
NZ_PYKE01000250.1	Protein Homology	CDS	42607	44292	.	+	0	ID=cds-WP_000272850.1;Parent=gene-C9F05_RS16410;Dbxref=GenBank:WP_000272850.1;Name=WP_000272850.1;Ontology_term=GO:0000160,GO:0071555,GO:0000155,GO:0004673,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461104.1;locus_tag=C9F05_RS16410;product=sensor histidine kinase;protein_id=WP_000272850.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	44289	45008	.	+	.	ID=gene-C9F05_RS16415;Name=btsR;gbkey=Gene;gene=btsR;gene_biotype=protein_coding;gene_synonym=yehT;locus_tag=C9F05_RS16415;old_locus_tag=C9F05_16880
NZ_PYKE01000250.1	Protein Homology	CDS	44289	45008	.	+	0	ID=cds-WP_000598637.1;Parent=gene-C9F05_RS16415;Dbxref=GenBank:WP_000598637.1;Name=WP_000598637.1;gbkey=CDS;gene=btsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461103.1;locus_tag=C9F05_RS16415;product=two-component system response regulator BtsR;protein_id=WP_000598637.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	45055	45522	.	+	.	ID=gene-C9F05_RS16420;Name=C9F05_RS16420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16420;old_locus_tag=C9F05_16885
NZ_PYKE01000250.1	Protein Homology	CDS	45055	45522	.	+	0	ID=cds-WP_000950413.1;Parent=gene-C9F05_RS16420;Dbxref=GenBank:WP_000950413.1;Name=WP_000950413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461102.1;locus_tag=C9F05_RS16420;product=DUF1456 family protein;protein_id=WP_000950413.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	45579	46109	.	-	.	ID=gene-C9F05_RS16425;Name=C9F05_RS16425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16425;old_locus_tag=C9F05_16890
NZ_PYKE01000250.1	Protein Homology	CDS	45579	46109	.	-	0	ID=cds-WP_135370465.1;Parent=gene-C9F05_RS16425;Dbxref=GenBank:WP_135370465.1;Name=WP_135370465.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461101.1;locus_tag=C9F05_RS16425;product=YehR family lipoprotein;protein_id=WP_135370465.1;transl_table=11
NZ_PYKE01000250.1	RefSeq	gene	46281	46702	.	-	.	ID=gene-C9F05_RS16430;Name=C9F05_RS16430;end_range=46702,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16430;old_locus_tag=C9F05_16895;partial=true
NZ_PYKE01000250.1	Protein Homology	CDS	46281	46702	.	-	2	ID=cds-WP_023258988.1;Parent=gene-C9F05_RS16430;Dbxref=GenBank:WP_023258988.1;Name=WP_023258988.1;end_range=46702,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461100.1;locus_tag=C9F05_RS16430;partial=true;product=YehR family lipoprotein;protein_id=WP_023258988.1;transl_table=11
##sequence-region NZ_PYKE01000212.1 1 9475
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000212.1	RefSeq	region	1	9475	.	+	.	ID=NZ_PYKE01000212.1:1..9475;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000212.1	RefSeq	gene	103	1467	.	-	.	ID=gene-C9F05_RS13695;Name=tdcG;gbkey=Gene;gene=tdcG;gene_biotype=protein_coding;locus_tag=C9F05_RS13695;old_locus_tag=C9F05_14085
NZ_PYKE01000212.1	Protein Homology	CDS	103	1467	.	-	0	ID=cds-WP_000622075.1;Parent=gene-C9F05_RS13695;Dbxref=GenBank:WP_000622075.1;Name=WP_000622075.1;gbkey=CDS;gene=tdcG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462154.1;locus_tag=C9F05_RS13695;product=L-serine ammonia-lyase;protein_id=WP_000622075.1;transl_table=11
NZ_PYKE01000212.1	RefSeq	gene	1537	3831	.	-	.	ID=gene-C9F05_RS13700;Name=pflB;gbkey=Gene;gene=pflB;gene_biotype=protein_coding;locus_tag=C9F05_RS13700;old_locus_tag=C9F05_14090
NZ_PYKE01000212.1	Protein Homology	CDS	1537	3831	.	-	0	ID=cds-WP_000867313.1;Parent=gene-C9F05_RS13700;Dbxref=GenBank:WP_000867313.1;Name=WP_000867313.1;Ontology_term=GO:0005975,GO:0008861,GO:0005737;gbkey=CDS;gene=pflB;go_component=cytoplasm|0005737||IEA;go_function=formate C-acetyltransferase activity|0008861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462155.1;locus_tag=C9F05_RS13700;product=formate C-acetyltransferase;protein_id=WP_000867313.1;transl_table=11
NZ_PYKE01000212.1	RefSeq	gene	3865	5073	.	-	.	ID=gene-C9F05_RS13705;Name=tdcD;gbkey=Gene;gene=tdcD;gene_biotype=protein_coding;locus_tag=C9F05_RS13705;old_locus_tag=C9F05_14095
NZ_PYKE01000212.1	Protein Homology	CDS	3865	5073	.	-	0	ID=cds-WP_135370365.1;Parent=gene-C9F05_RS13705;Dbxref=GenBank:WP_135370365.1;Name=WP_135370365.1;Ontology_term=GO:0006082,GO:0016310,GO:0016301;gbkey=CDS;gene=tdcD;go_function=kinase activity|0016301||IEA;go_process=organic acid metabolic process|0006082||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462156.1;locus_tag=C9F05_RS13705;product=propionate kinase;protein_id=WP_135370365.1;transl_table=11
NZ_PYKE01000212.1	RefSeq	gene	5140	6471	.	-	.	ID=gene-C9F05_RS13710;Name=tdcC;gbkey=Gene;gene=tdcC;gene_biotype=protein_coding;locus_tag=C9F05_RS13710;old_locus_tag=C9F05_14100
NZ_PYKE01000212.1	Protein Homology	CDS	5140	6471	.	-	0	ID=cds-WP_000108129.1;Parent=gene-C9F05_RS13710;Dbxref=GenBank:WP_000108129.1;Name=WP_000108129.1;gbkey=CDS;gene=tdcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462157.1;locus_tag=C9F05_RS13710;product=threonine/serine transporter TdcC;protein_id=WP_000108129.1;transl_table=11
NZ_PYKE01000212.1	RefSeq	gene	6492	7481	.	-	.	ID=gene-C9F05_RS13715;Name=tdcB;gbkey=Gene;gene=tdcB;gene_biotype=protein_coding;locus_tag=C9F05_RS13715;old_locus_tag=C9F05_14105
NZ_PYKE01000212.1	Protein Homology	CDS	6492	7481	.	-	0	ID=cds-WP_000548368.1;Parent=gene-C9F05_RS13715;Dbxref=GenBank:WP_000548368.1;Name=WP_000548368.1;Ontology_term=GO:0006567,GO:0004794,GO:0030170;gbkey=CDS;gene=tdcB;go_function=threonine deaminase activity|0004794||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=L-threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462158.1;locus_tag=C9F05_RS13715;product=bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB;protein_id=WP_000548368.1;transl_table=11
NZ_PYKE01000212.1	RefSeq	gene	7579	8517	.	-	.	ID=gene-C9F05_RS13720;Name=tdcA;gbkey=Gene;gene=tdcA;gene_biotype=protein_coding;locus_tag=C9F05_RS13720;old_locus_tag=C9F05_14110
NZ_PYKE01000212.1	Protein Homology	CDS	7579	8517	.	-	0	ID=cds-WP_001094907.1;Parent=gene-C9F05_RS13720;Dbxref=GenBank:WP_001094907.1;Name=WP_001094907.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=tdcA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462159.1;locus_tag=C9F05_RS13720;product=transcriptional regulator TdcA;protein_id=WP_001094907.1;transl_table=11
##sequence-region NZ_PYKE01000175.1 1 9403
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000175.1	RefSeq	region	1	9403	.	+	.	ID=NZ_PYKE01000175.1:1..9403;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000175.1	RefSeq	gene	1	3030	.	+	.	ID=gene-C9F05_RS11895;Name=ftsK;gbkey=Gene;gene=ftsK;gene_biotype=protein_coding;locus_tag=C9F05_RS11895;old_locus_tag=C9F05_12235;partial=true;start_range=.,1
NZ_PYKE01000175.1	Protein Homology	CDS	1	3030	.	+	0	ID=cds-WP_135370309.1;Parent=gene-C9F05_RS11895;Dbxref=GenBank:WP_135370309.1;Name=WP_135370309.1;Ontology_term=GO:0003677,GO:0005524;gbkey=CDS;gene=ftsK;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459936.1;locus_tag=C9F05_RS11895;partial=true;product=DNA translocase FtsK;protein_id=WP_135370309.1;start_range=.,1;transl_table=11
NZ_PYKE01000175.1	RefSeq	gene	3173	3784	.	+	.	ID=gene-C9F05_RS11900;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=C9F05_RS11900;old_locus_tag=C9F05_12240
NZ_PYKE01000175.1	Protein Homology	CDS	3173	3784	.	+	0	ID=cds-WP_001519746.1;Parent=gene-C9F05_RS11900;Dbxref=GenBank:WP_001519746.1;Name=WP_001519746.1;Ontology_term=GO:0042953,GO:0042597;gbkey=CDS;gene=lolA;go_component=periplasmic space|0042597||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010354356.1;locus_tag=C9F05_RS11900;product=outer membrane lipoprotein chaperone LolA;protein_id=WP_001519746.1;transl_table=11
NZ_PYKE01000175.1	RefSeq	gene	3794	5137	.	+	.	ID=gene-C9F05_RS11905;Name=rarA;gbkey=Gene;gene=rarA;gene_biotype=protein_coding;gene_synonym=mgsA;locus_tag=C9F05_RS11905;old_locus_tag=C9F05_12245
NZ_PYKE01000175.1	Protein Homology	CDS	3794	5137	.	+	0	ID=cds-WP_135370310.1;Parent=gene-C9F05_RS11905;Dbxref=GenBank:WP_135370310.1;Name=WP_135370310.1;gbkey=CDS;gene=rarA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459938.1;locus_tag=C9F05_RS11905;product=replication-associated recombination protein RarA;protein_id=WP_135370310.1;transl_table=11
NZ_PYKE01000175.1	RefSeq	gene	5396	6688	.	+	.	ID=gene-C9F05_RS11910;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=C9F05_RS11910;old_locus_tag=C9F05_12255
NZ_PYKE01000175.1	Protein Homology	CDS	5396	6688	.	+	0	ID=cds-WP_000886697.1;Parent=gene-C9F05_RS11910;Dbxref=GenBank:WP_000886697.1;Name=WP_000886697.1;Ontology_term=GO:0006434,GO:0000166,GO:0004828,GO:0005524;gbkey=CDS;gene=serS;go_function=nucleotide binding|0000166||IEA,serine-tRNA ligase activity|0004828||IEA,ATP binding|0005524||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000887397.1;locus_tag=C9F05_RS11910;product=serine--tRNA ligase;protein_id=WP_000886697.1;transl_table=11
NZ_PYKE01000175.1	RefSeq	gene	6925	9369	.	+	.	ID=gene-C9F05_RS11915;Name=dmsA;gbkey=Gene;gene=dmsA;gene_biotype=protein_coding;locus_tag=C9F05_RS11915;old_locus_tag=C9F05_12260
NZ_PYKE01000175.1	Protein Homology	CDS	6925	9369	.	+	0	ID=cds-WP_000850250.1;Parent=gene-C9F05_RS11915;Dbxref=GenBank:WP_000850250.1;Name=WP_000850250.1;Ontology_term=GO:0009389,GO:0030151;gbkey=CDS;gene=dmsA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA,molybdenum ion binding|0030151||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459940.1;locus_tag=C9F05_RS11915;product=dimethylsulfoxide reductase subunit A;protein_id=WP_000850250.1;transl_table=11
##sequence-region NZ_PYKE01000282.1 1 9359
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000282.1	RefSeq	region	1	9359	.	+	.	ID=NZ_PYKE01000282.1:1..9359;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000282.1	RefSeq	gene	129	2792	.	+	.	ID=gene-C9F05_RS18685;Name=cas3;gbkey=Gene;gene=cas3;gene_biotype=protein_coding;locus_tag=C9F05_RS18685;old_locus_tag=C9F05_19220
NZ_PYKE01000282.1	Protein Homology	CDS	129	2792	.	+	0	ID=cds-WP_135370539.1;Parent=gene-C9F05_RS18685;Dbxref=GenBank:WP_135370539.1;Name=WP_135370539.1;Ontology_term=GO:0043571,GO:0004386;gbkey=CDS;gene=cas3;go_function=helicase activity|0004386||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461865.1;locus_tag=C9F05_RS18685;product=CRISPR-associated helicase Cas3';protein_id=WP_135370539.1;transl_table=11
NZ_PYKE01000282.1	RefSeq	gene	2804	4363	.	+	.	ID=gene-C9F05_RS18690;Name=casA;gbkey=Gene;gene=casA;gene_biotype=protein_coding;gene_synonym=cse1;locus_tag=C9F05_RS18690;old_locus_tag=C9F05_19225
NZ_PYKE01000282.1	Protein Homology	CDS	2804	4363	.	+	0	ID=cds-WP_000368586.1;Parent=gene-C9F05_RS18690;Dbxref=GenBank:WP_000368586.1;Name=WP_000368586.1;Ontology_term=GO:0043571;gbkey=CDS;gene=casA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461864.1;locus_tag=C9F05_RS18690;product=type I-E CRISPR-associated protein Cse1/CasA;protein_id=WP_000368586.1;transl_table=11
NZ_PYKE01000282.1	RefSeq	gene	4360	4908	.	+	.	ID=gene-C9F05_RS18695;Name=casB;gbkey=Gene;gene=casB;gene_biotype=protein_coding;gene_synonym=cse2;locus_tag=C9F05_RS18695;old_locus_tag=C9F05_19230
NZ_PYKE01000282.1	Protein Homology	CDS	4360	4908	.	+	0	ID=cds-WP_020839113.1;Parent=gene-C9F05_RS18695;Dbxref=GenBank:WP_020839113.1;Name=WP_020839113.1;Ontology_term=GO:0043571;gbkey=CDS;gene=casB;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000117945.1;locus_tag=C9F05_RS18695;product=type I-E CRISPR-associated protein Cse2/CasB;protein_id=WP_020839113.1;transl_table=11
NZ_PYKE01000282.1	RefSeq	gene	4922	5980	.	+	.	ID=gene-C9F05_RS18700;Name=cas7e;gbkey=Gene;gene=cas7e;gene_biotype=protein_coding;locus_tag=C9F05_RS18700;old_locus_tag=C9F05_19235
NZ_PYKE01000282.1	Protein Homology	CDS	4922	5980	.	+	0	ID=cds-WP_001591403.1;Parent=gene-C9F05_RS18700;Dbxref=GenBank:WP_001591403.1;Name=WP_001591403.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas7e;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461862.1;locus_tag=C9F05_RS18700;product=type I-E CRISPR-associated protein Cas7/Cse4/CasC;protein_id=WP_001591403.1;transl_table=11
NZ_PYKE01000282.1	RefSeq	gene	5991	6737	.	+	.	ID=gene-C9F05_RS18705;Name=cas5e;gbkey=Gene;gene=cas5e;gene_biotype=protein_coding;locus_tag=C9F05_RS18705;old_locus_tag=C9F05_19240
NZ_PYKE01000282.1	Protein Homology	CDS	5991	6737	.	+	0	ID=cds-WP_023236955.1;Parent=gene-C9F05_RS18705;Dbxref=GenBank:WP_023236955.1;Name=WP_023236955.1;Ontology_term=GO:0043571,GO:0051607,GO:0003723;gbkey=CDS;gene=cas5e;go_function=RNA binding|0003723||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461861.1;locus_tag=C9F05_RS18705;product=type I-E CRISPR-associated protein Cas5/CasD;protein_id=WP_023236955.1;transl_table=11
NZ_PYKE01000282.1	RefSeq	gene	6719	7369	.	+	.	ID=gene-C9F05_RS18710;Name=cas6e;gbkey=Gene;gene=cas6e;gene_biotype=protein_coding;locus_tag=C9F05_RS18710;old_locus_tag=C9F05_19245
NZ_PYKE01000282.1	Protein Homology	CDS	6719	7369	.	+	0	ID=cds-WP_135370540.1;Parent=gene-C9F05_RS18710;Dbxref=GenBank:WP_135370540.1;Name=WP_135370540.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas6e;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461860.1;locus_tag=C9F05_RS18710;product=type I-E CRISPR-associated protein Cas6/Cse3/CasE;protein_id=WP_135370540.1;transl_table=11
NZ_PYKE01000282.1	RefSeq	gene	7366	8286	.	+	.	ID=gene-C9F05_RS18715;Name=cas1e;gbkey=Gene;gene=cas1e;gene_biotype=protein_coding;locus_tag=C9F05_RS18715;old_locus_tag=C9F05_19250
NZ_PYKE01000282.1	Protein Homology	CDS	7366	8286	.	+	0	ID=cds-WP_061383858.1;Parent=gene-C9F05_RS18715;Dbxref=GenBank:WP_061383858.1;Name=WP_061383858.1;Ontology_term=GO:0043571,GO:0051607,GO:0003676,GO:0004520,GO:0046872;gbkey=CDS;gene=cas1e;go_function=nucleic acid binding|0003676||IEA,DNA endonuclease activity|0004520||IEA,metal ion binding|0046872||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461859.1;locus_tag=C9F05_RS18715;product=type I-E CRISPR-associated endonuclease Cas1e;protein_id=WP_061383858.1;transl_table=11
NZ_PYKE01000282.1	RefSeq	gene	8286	8579	.	+	.	ID=gene-C9F05_RS18720;Name=cas2e;gbkey=Gene;gene=cas2e;gene_biotype=protein_coding;locus_tag=C9F05_RS18720;old_locus_tag=C9F05_19255
NZ_PYKE01000282.1	Protein Homology	CDS	8286	8579	.	+	0	ID=cds-WP_023201007.1;Parent=gene-C9F05_RS18720;Dbxref=GenBank:WP_023201007.1;Name=WP_023201007.1;Ontology_term=GO:0043571,GO:0004521;gbkey=CDS;gene=cas2e;go_function=RNA endonuclease activity|0004521||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311635.1;locus_tag=C9F05_RS18720;product=type I-E CRISPR-associated endoribonuclease Cas2e;protein_id=WP_023201007.1;transl_table=11
NZ_PYKE01000282.1	RefSeq	direct_repeat	8676	9314	.	+	.	ID=id-NZ_PYKE01000282.1:8676..9314;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=8676..8704;rpt_unit_seq=gtgttccccgcgccagcggggataaaccg
##sequence-region NZ_PYKE01000086.1 1 9238
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000086.1	RefSeq	region	1	9238	.	+	.	ID=NZ_PYKE01000086.1:1..9238;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000086.1	RefSeq	gene	1	2207	.	+	.	ID=gene-C9F05_RS05895;Name=adhE;gbkey=Gene;gene=adhE;gene_biotype=protein_coding;gene_synonym=adhC;locus_tag=C9F05_RS05895;old_locus_tag=C9F05_06005;partial=true;start_range=.,1
NZ_PYKE01000086.1	Protein Homology	CDS	1	2207	.	+	2	ID=cds-WP_135370105.1;Parent=gene-C9F05_RS05895;Dbxref=GenBank:WP_135370105.1;Name=WP_135370105.1;Ontology_term=GO:0006066,GO:0015976,GO:0004022,GO:0016620,GO:0046872;gbkey=CDS;gene=adhE;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,metal ion binding|0046872||IEA;go_process=alcohol metabolic process|0006066||IEA,carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460708.1;locus_tag=C9F05_RS05895;partial=true;product=bifunctional acetaldehyde-CoA/alcohol dehydrogenase;protein_id=WP_135370105.1;start_range=.,1;transl_table=11
NZ_PYKE01000086.1	RefSeq	gene	2404	3021	.	-	.	ID=gene-C9F05_RS05900;Name=tdk;gbkey=Gene;gene=tdk;gene_biotype=protein_coding;locus_tag=C9F05_RS05900;old_locus_tag=C9F05_06010
NZ_PYKE01000086.1	Protein Homology	CDS	2404	3021	.	-	0	ID=cds-WP_000068097.1;Parent=gene-C9F05_RS05900;Dbxref=GenBank:WP_000068097.1;Name=WP_000068097.1;gbkey=CDS;gene=tdk;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460709.1;locus_tag=C9F05_RS05900;product=thymidine kinase;protein_id=WP_000068097.1;transl_table=11
NZ_PYKE01000086.1	RefSeq	gene	3685	4098	.	+	.	ID=gene-C9F05_RS05905;Name=hns;gbkey=Gene;gene=hns;gene_biotype=protein_coding;locus_tag=C9F05_RS05905;old_locus_tag=C9F05_06015
NZ_PYKE01000086.1	Protein Homology	CDS	3685	4098	.	+	0	ID=cds-WP_001287383.1;Parent=gene-C9F05_RS05905;Dbxref=GenBank:WP_001287383.1;Name=WP_001287383.1;Ontology_term=GO:0071824,GO:0003677;gbkey=CDS;gene=hns;go_function=DNA binding|0003677||IEA;go_process=protein-DNA complex organization|0071824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460710.1;locus_tag=C9F05_RS05905;product=histone-like nucleoid-structuring protein H-NS;protein_id=WP_001287383.1;transl_table=11
NZ_PYKE01000086.1	RefSeq	gene	4230	5138	.	-	.	ID=gene-C9F05_RS05910;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=C9F05_RS05910;old_locus_tag=C9F05_06020
NZ_PYKE01000086.1	Protein Homology	CDS	4230	5138	.	-	0	ID=cds-WP_000729451.1;Parent=gene-C9F05_RS05910;Dbxref=GenBank:WP_000729451.1;Name=WP_000729451.1;gbkey=CDS;gene=galU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460711.1;locus_tag=C9F05_RS05910;product=UTP--glucose-1-phosphate uridylyltransferase GalU;protein_id=WP_000729451.1;transl_table=11
NZ_PYKE01000086.1	RefSeq	gene	5341	6354	.	-	.	ID=gene-C9F05_RS05915;Name=rssB;gbkey=Gene;gene=rssB;gene_biotype=protein_coding;locus_tag=C9F05_RS05915;old_locus_tag=C9F05_06025
NZ_PYKE01000086.1	Protein Homology	CDS	5341	6354	.	-	0	ID=cds-WP_000193432.1;Parent=gene-C9F05_RS05915;Dbxref=GenBank:WP_000193432.1;Name=WP_000193432.1;Ontology_term=GO:0000160;gbkey=CDS;gene=rssB;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460712.1;locus_tag=C9F05_RS05915;product=two-component system response regulator RssB;protein_id=WP_000193432.1;transl_table=11
NZ_PYKE01000086.1	RefSeq	gene	6445	7350	.	-	.	ID=gene-C9F05_RS05920;Name=rssA;gbkey=Gene;gene=rssA;gene_biotype=protein_coding;locus_tag=C9F05_RS05920;old_locus_tag=C9F05_06030
NZ_PYKE01000086.1	Protein Homology	CDS	6445	7350	.	-	0	ID=cds-WP_001230572.1;Parent=gene-C9F05_RS05920;Dbxref=GenBank:WP_001230572.1;Name=WP_001230572.1;Ontology_term=GO:0006629,GO:0004622;gbkey=CDS;gene=rssA;go_function=phosphatidylcholine lysophospholipase activity|0004622||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460713.1;locus_tag=C9F05_RS05920;product=patatin-like phospholipase RssA;protein_id=WP_001230572.1;transl_table=11
NZ_PYKE01000086.1	RefSeq	gene	7461	7919	.	+	.	ID=gene-C9F05_RS05925;Name=C9F05_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05925;old_locus_tag=C9F05_06035
NZ_PYKE01000086.1	Protein Homology	CDS	7461	7919	.	+	0	ID=cds-WP_001682412.1;Parent=gene-C9F05_RS05925;Dbxref=GenBank:WP_001682412.1;Name=WP_001682412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460714.1;locus_tag=C9F05_RS05925;product=YchJ family protein;protein_id=WP_001682412.1;transl_table=11
NZ_PYKE01000086.1	RefSeq	gene	7970	8812	.	+	.	ID=gene-C9F05_RS05930;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=C9F05_RS05930;old_locus_tag=C9F05_06040
NZ_PYKE01000086.1	Protein Homology	CDS	7970	8812	.	+	0	ID=cds-WP_001191156.1;Parent=gene-C9F05_RS05930;Dbxref=GenBank:WP_001191156.1;Name=WP_001191156.1;Ontology_term=GO:0006189,GO:0008864;gbkey=CDS;gene=purU;go_function=formyltetrahydrofolate deformylase activity|0008864||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460715.1;locus_tag=C9F05_RS05930;product=formyltetrahydrofolate deformylase;protein_id=WP_001191156.1;transl_table=11
NZ_PYKE01000086.1	RefSeq	gene	8982	9122	.	+	.	ID=gene-C9F05_RS05935;Name=C9F05_RS05935;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9F05_RS05935;old_locus_tag=C9F05_06045
NZ_PYKE01000086.1	cmsearch	ncRNA	8982	9122	.	+	.	ID=rna-C9F05_RS05935;Parent=gene-C9F05_RS05935;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS05935;product=RtT sRNA
NZ_PYKE01000086.1	cmsearch	exon	8982	9122	.	+	.	ID=exon-C9F05_RS05935-1;Parent=rna-C9F05_RS05935;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS05935;product=RtT sRNA
NZ_PYKE01000086.1	RefSeq	gene	9153	9237	.	+	.	ID=gene-C9F05_RS05940;Name=C9F05_RS05940;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS05940;old_locus_tag=C9F05_06050
NZ_PYKE01000086.1	tRNAscan-SE	tRNA	9153	9237	.	+	.	ID=rna-C9F05_RS05940;Parent=gene-C9F05_RS05940;anticodon=(pos:9187..9189);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS05940;product=tRNA-Tyr
NZ_PYKE01000086.1	tRNAscan-SE	exon	9153	9237	.	+	.	ID=exon-C9F05_RS05940-1;Parent=rna-C9F05_RS05940;anticodon=(pos:9187..9189);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS05940;product=tRNA-Tyr
##sequence-region NZ_PYKE01000129.1 1 45763
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000129.1	RefSeq	region	1	45763	.	+	.	ID=NZ_PYKE01000129.1:1..45763;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000129.1	RefSeq	gene	1	5279	.	+	.	ID=gene-C9F05_RS09350;Name=C9F05_RS09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09350;old_locus_tag=C9F05_09595;partial=true;start_range=.,1
NZ_PYKE01000129.1	Protein Homology	CDS	1	5279	.	+	2	ID=cds-WP_135370206.1;Parent=gene-C9F05_RS09350;Dbxref=GenBank:WP_135370206.1;Name=WP_135370206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462381.1;locus_tag=C9F05_RS09350;partial=true;product=autotransporter domain-containing protein;protein_id=WP_135370206.1;start_range=.,1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	5472	5642	.	+	.	ID=gene-C9F05_RS09355;Name=C9F05_RS09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09355;old_locus_tag=C9F05_09600
NZ_PYKE01000129.1	Protein Homology	CDS	5472	5642	.	+	0	ID=cds-WP_000472323.1;Parent=gene-C9F05_RS09355;Dbxref=GenBank:WP_000472323.1;Name=WP_000472323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462383.1;locus_tag=C9F05_RS09355;product=YhfL family protein;protein_id=WP_000472323.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	5787	6791	.	-	.	ID=gene-C9F05_RS09360;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=C9F05_RS09360;old_locus_tag=C9F05_09605
NZ_PYKE01000129.1	Protein Homology	CDS	5787	6791	.	-	0	ID=cds-WP_000165562.1;Parent=gene-C9F05_RS09360;Dbxref=GenBank:WP_000165562.1;Name=WP_000165562.1;Ontology_term=GO:0006436,GO:0000166,GO:0004830,GO:0005524;gbkey=CDS;gene=trpS;go_function=nucleotide binding|0000166||IEA,tryptophan-tRNA ligase activity|0004830||IEA,ATP binding|0005524||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462384.1;locus_tag=C9F05_RS09360;product=tryptophan--tRNA ligase;protein_id=WP_000165562.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	6784	7542	.	-	.	ID=gene-C9F05_RS09365;Name=gph;gbkey=Gene;gene=gph;gene_biotype=protein_coding;locus_tag=C9F05_RS09365;old_locus_tag=C9F05_09610
NZ_PYKE01000129.1	Protein Homology	CDS	6784	7542	.	-	0	ID=cds-WP_000359649.1;Parent=gene-C9F05_RS09365;Dbxref=GenBank:WP_000359649.1;Name=WP_000359649.1;Ontology_term=GO:0005975,GO:0008967;gbkey=CDS;gene=gph;go_function=phosphoglycolate phosphatase activity|0008967||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462385.1;locus_tag=C9F05_RS09365;product=phosphoglycolate phosphatase;protein_id=WP_000359649.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	7535	8212	.	-	.	ID=gene-C9F05_RS09370;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=C9F05_RS09370;old_locus_tag=C9F05_09615
NZ_PYKE01000129.1	Protein Homology	CDS	7535	8212	.	-	0	ID=cds-WP_000816284.1;Parent=gene-C9F05_RS09370;Dbxref=GenBank:WP_000816284.1;Name=WP_000816284.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462386.1;locus_tag=C9F05_RS09370;product=ribulose-phosphate 3-epimerase;protein_id=WP_000816284.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	8230	9066	.	-	.	ID=gene-C9F05_RS09375;Name=dam;gbkey=Gene;gene=dam;gene_biotype=protein_coding;locus_tag=C9F05_RS09375;old_locus_tag=C9F05_09620
NZ_PYKE01000129.1	Protein Homology	CDS	8230	9066	.	-	0	ID=cds-WP_000742132.1;Parent=gene-C9F05_RS09375;Dbxref=GenBank:WP_000742132.1;Name=WP_000742132.1;Ontology_term=GO:0003676,GO:0009007;gbkey=CDS;gene=dam;go_function=nucleic acid binding|0003676||IEA,site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462387.1;locus_tag=C9F05_RS09375;product=adenine-specific DNA-methyltransferase;protein_id=WP_000742132.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	9247	10524	.	-	.	ID=gene-C9F05_RS09380;Name=damX;gbkey=Gene;gene=damX;gene_biotype=protein_coding;locus_tag=C9F05_RS09380;old_locus_tag=C9F05_09625
NZ_PYKE01000129.1	Protein Homology	CDS	9247	10524	.	-	0	ID=cds-WP_135370207.1;Parent=gene-C9F05_RS09380;Dbxref=GenBank:WP_135370207.1;Name=WP_135370207.1;Ontology_term=GO:0032506,GO:0042834;gbkey=CDS;gene=damX;go_function=peptidoglycan binding|0042834||IEA;go_process=cytokinetic process|0032506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462388.1;locus_tag=C9F05_RS09380;product=cell division protein DamX;protein_id=WP_135370207.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	10622	11710	.	-	.	ID=gene-C9F05_RS09385;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=C9F05_RS09385;old_locus_tag=C9F05_09630
NZ_PYKE01000129.1	Protein Homology	CDS	10622	11710	.	-	0	ID=cds-WP_000439824.1;Parent=gene-C9F05_RS09385;Dbxref=GenBank:WP_000439824.1;Name=WP_000439824.1;Ontology_term=GO:0009073,GO:0009423,GO:0003856,GO:0005737;gbkey=CDS;gene=aroB;go_component=cytoplasm|0005737||IEA;go_function=3-dehydroquinate synthase activity|0003856||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA,chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462389.1;locus_tag=C9F05_RS09385;product=3-dehydroquinate synthase;protein_id=WP_000439824.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	11767	12288	.	-	.	ID=gene-C9F05_RS09390;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=C9F05_RS09390;old_locus_tag=C9F05_09635
NZ_PYKE01000129.1	Protein Homology	CDS	11767	12288	.	-	0	ID=cds-WP_000818621.1;Parent=gene-C9F05_RS09390;Dbxref=GenBank:WP_000818621.1;Name=WP_000818621.1;gbkey=CDS;gene=aroK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004709337.1;locus_tag=C9F05_RS09390;product=shikimate kinase AroK;protein_id=WP_000818621.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	12753	13991	.	-	.	ID=gene-C9F05_RS09400;Name=hofQ;gbkey=Gene;gene=hofQ;gene_biotype=protein_coding;locus_tag=C9F05_RS09400;old_locus_tag=C9F05_09645
NZ_PYKE01000129.1	Protein Homology	CDS	12753	13991	.	-	0	ID=cds-WP_050067943.1;Parent=gene-C9F05_RS09400;Dbxref=GenBank:WP_050067943.1;Name=WP_050067943.1;Ontology_term=GO:0009306,GO:0019867;gbkey=CDS;gene=hofQ;go_component=outer membrane|0019867||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462391.1;locus_tag=C9F05_RS09400;product=DNA uptake porin HofQ;protein_id=WP_050067943.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	13906	14307	.	-	.	ID=gene-C9F05_RS09405;Name=C9F05_RS09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09405;old_locus_tag=C9F05_09650
NZ_PYKE01000129.1	Protein Homology	CDS	13906	14307	.	-	0	ID=cds-WP_135370208.1;Parent=gene-C9F05_RS09405;Dbxref=GenBank:WP_135370208.1;Name=WP_135370208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462392.1;locus_tag=C9F05_RS09405;product=HofP DNA utilization family protein;protein_id=WP_135370208.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	14297	14770	.	-	.	ID=gene-C9F05_RS09410;Name=C9F05_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09410;old_locus_tag=C9F05_09655
NZ_PYKE01000129.1	Protein Homology	CDS	14297	14770	.	-	0	ID=cds-WP_001727862.1;Parent=gene-C9F05_RS09410;Dbxref=GenBank:WP_001727862.1;Name=WP_001727862.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462393.1;locus_tag=C9F05_RS09410;product=HofO family protein;protein_id=WP_001727862.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	14754	15293	.	-	.	ID=gene-C9F05_RS09415;Name=C9F05_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09415;old_locus_tag=C9F05_09660
NZ_PYKE01000129.1	Protein Homology	CDS	14754	15293	.	-	0	ID=cds-WP_135370209.1;Parent=gene-C9F05_RS09415;Dbxref=GenBank:WP_135370209.1;Name=WP_135370209.1;Ontology_term=GO:0043107,GO:0043683;gbkey=CDS;go_process=type IV pilus-dependent motility|0043107||IEA,type IV pilus assembly|0043683||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462394.1;locus_tag=C9F05_RS09415;product=PilN domain-containing protein;protein_id=WP_135370209.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	15293	16072	.	-	.	ID=gene-C9F05_RS09420;Name=C9F05_RS09420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09420;old_locus_tag=C9F05_09665
NZ_PYKE01000129.1	Protein Homology	CDS	15293	16072	.	-	0	ID=cds-WP_000874746.1;Parent=gene-C9F05_RS09420;Dbxref=GenBank:WP_000874746.1;Name=WP_000874746.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462395.1;locus_tag=C9F05_RS09420;product=hypothetical protein;protein_id=WP_000874746.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	16193	18745	.	+	.	ID=gene-C9F05_RS09425;Name=mrcA;gbkey=Gene;gene=mrcA;gene_biotype=protein_coding;locus_tag=C9F05_RS09425;old_locus_tag=C9F05_09670
NZ_PYKE01000129.1	Protein Homology	CDS	16193	18745	.	+	0	ID=cds-WP_167851642.1;Parent=gene-C9F05_RS09425;Dbxref=GenBank:WP_167851642.1;Name=WP_167851642.1;Ontology_term=GO:0008658;gbkey=CDS;gene=mrcA;go_function=penicillin binding|0008658||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312265.2;locus_tag=C9F05_RS09425;product=peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA;protein_id=WP_167851642.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	18841	19404	.	-	.	ID=gene-C9F05_RS09430;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=C9F05_RS09430;old_locus_tag=C9F05_09675
NZ_PYKE01000129.1	Protein Homology	CDS	18841	19404	.	-	0	ID=cds-WP_000045725.1;Parent=gene-C9F05_RS09430;Dbxref=GenBank:WP_000045725.1;Name=WP_000045725.1;Ontology_term=GO:0016787;gbkey=CDS;gene=nudE;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000045725.1;locus_tag=C9F05_RS09430;product=ADP compounds hydrolase NudE;protein_id=WP_000045725.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	19727	21859	.	+	.	ID=gene-C9F05_RS09435;Name=igaA;gbkey=Gene;gene=igaA;gene_biotype=protein_coding;locus_tag=C9F05_RS09435;old_locus_tag=C9F05_09680
NZ_PYKE01000129.1	Protein Homology	CDS	19727	21859	.	+	0	ID=cds-WP_135370211.1;Parent=gene-C9F05_RS09435;Dbxref=GenBank:WP_135370211.1;Name=WP_135370211.1;gbkey=CDS;gene=igaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462398.1;locus_tag=C9F05_RS09435;product=intracellular growth attenuator protein IgaA;protein_id=WP_135370211.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	21924	22592	.	+	.	ID=gene-C9F05_RS09440;Name=yrfG;gbkey=Gene;gene=yrfG;gene_biotype=protein_coding;locus_tag=C9F05_RS09440;old_locus_tag=C9F05_09685
NZ_PYKE01000129.1	Protein Homology	CDS	21924	22592	.	+	0	ID=cds-WP_001520508.1;Parent=gene-C9F05_RS09440;Dbxref=GenBank:WP_001520508.1;Name=WP_001520508.1;gbkey=CDS;gene=yrfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462399.1;locus_tag=C9F05_RS09440;product=GMP/IMP nucleotidase;protein_id=WP_001520508.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	22603	23004	.	+	.	ID=gene-C9F05_RS09445;Name=hslR;gbkey=Gene;gene=hslR;gene_biotype=protein_coding;locus_tag=C9F05_RS09445;old_locus_tag=C9F05_09690
NZ_PYKE01000129.1	Protein Homology	CDS	22603	23004	.	+	0	ID=cds-WP_000660723.1;Parent=gene-C9F05_RS09445;Dbxref=GenBank:WP_000660723.1;Name=WP_000660723.1;gbkey=CDS;gene=hslR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462400.1;locus_tag=C9F05_RS09445;product=ribosome-associated heat shock protein Hsp15;protein_id=WP_000660723.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	23029	23907	.	+	.	ID=gene-C9F05_RS09450;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=C9F05_RS09450;old_locus_tag=C9F05_09695
NZ_PYKE01000129.1	Protein Homology	CDS	23029	23907	.	+	0	ID=cds-WP_076167059.1;Parent=gene-C9F05_RS09450;Dbxref=GenBank:WP_076167059.1;Name=WP_076167059.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=hslO;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417860.2;locus_tag=C9F05_RS09450;product=Hsp33 family molecular chaperone HslO;protein_id=WP_076167059.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	24017	25726	.	-	.	ID=gene-C9F05_RS09455;Name=C9F05_RS09455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09455;old_locus_tag=C9F05_09700
NZ_PYKE01000129.1	Protein Homology	CDS	24017	25726	.	-	0	ID=cds-WP_080081832.1;Parent=gene-C9F05_RS09455;Dbxref=GenBank:WP_080081832.1;Name=WP_080081832.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462402.1;locus_tag=C9F05_RS09455;product=DUF4153 domain-containing protein;protein_id=WP_080081832.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	26106	27725	.	+	.	ID=gene-C9F05_RS09460;Name=pckA;gbkey=Gene;gene=pckA;gene_biotype=protein_coding;locus_tag=C9F05_RS09460;old_locus_tag=C9F05_09705
NZ_PYKE01000129.1	Protein Homology	CDS	26106	27725	.	+	0	ID=cds-WP_001265689.1;Parent=gene-C9F05_RS09460;Dbxref=GenBank:WP_001265689.1;Name=WP_001265689.1;Ontology_term=GO:0006094,GO:0004612;gbkey=CDS;gene=pckA;go_function=phosphoenolpyruvate carboxykinase (ATP) activity|0004612||IEA;go_process=gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462403.2;locus_tag=C9F05_RS09460;product=phosphoenolpyruvate carboxykinase (ATP);protein_id=WP_001265689.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	27800	29152	.	-	.	ID=gene-C9F05_RS09465;Name=envZ;gbkey=Gene;gene=envZ;gene_biotype=protein_coding;locus_tag=C9F05_RS09465;old_locus_tag=C9F05_09710
NZ_PYKE01000129.1	Protein Homology	CDS	27800	29152	.	-	0	ID=cds-WP_001253818.1;Parent=gene-C9F05_RS09465;Dbxref=GenBank:WP_001253818.1;Name=WP_001253818.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=envZ;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462404.1;locus_tag=C9F05_RS09465;product=two-component system sensor histidine kinase EnvZ;protein_id=WP_001253818.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	29149	29868	.	-	.	ID=gene-C9F05_RS09470;Name=ompR;gbkey=Gene;gene=ompR;gene_biotype=protein_coding;locus_tag=C9F05_RS09470;old_locus_tag=C9F05_09715
NZ_PYKE01000129.1	Protein Homology	CDS	29149	29868	.	-	0	ID=cds-WP_001157751.1;Parent=gene-C9F05_RS09470;Dbxref=GenBank:WP_001157751.1;Name=WP_001157751.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=ompR;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007374840.1;locus_tag=C9F05_RS09470;product=osmolarity response regulator transcription factor OmpR;protein_id=WP_001157751.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	30094	30567	.	+	.	ID=gene-C9F05_RS09475;Name=greB;gbkey=Gene;gene=greB;gene_biotype=protein_coding;locus_tag=C9F05_RS09475;old_locus_tag=C9F05_09720
NZ_PYKE01000129.1	Protein Homology	CDS	30094	30567	.	+	0	ID=cds-WP_000856695.1;Parent=gene-C9F05_RS09475;Dbxref=GenBank:WP_000856695.1;Name=WP_000856695.1;Ontology_term=GO:0032784,GO:0003677;gbkey=CDS;gene=greB;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015703675.1;locus_tag=C9F05_RS09475;product=transcription elongation factor GreB;protein_id=WP_000856695.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	30666	32996	.	+	.	ID=gene-C9F05_RS09480;Name=C9F05_RS09480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09480;old_locus_tag=C9F05_09725
NZ_PYKE01000129.1	Protein Homology	CDS	30666	32996	.	+	0	ID=cds-WP_135370212.1;Parent=gene-C9F05_RS09480;Dbxref=GenBank:WP_135370212.1;Name=WP_135370212.1;Ontology_term=GO:0003676,GO:0003729,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=nucleic acid binding|0003676||IEA,mRNA binding|0003729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312276.2;locus_tag=C9F05_RS09480;product=Tex family protein;protein_id=WP_135370212.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	33433	33660	.	+	.	ID=gene-C9F05_RS09485;Name=feoA;gbkey=Gene;gene=feoA;gene_biotype=protein_coding;locus_tag=C9F05_RS09485;old_locus_tag=C9F05_09735
NZ_PYKE01000129.1	Protein Homology	CDS	33433	33660	.	+	0	ID=cds-WP_001160955.1;Parent=gene-C9F05_RS09485;Dbxref=GenBank:WP_001160955.1;Name=WP_001160955.1;gbkey=CDS;gene=feoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462408.1;locus_tag=C9F05_RS09485;product=ferrous iron transporter A;protein_id=WP_001160955.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	33679	35997	.	+	.	ID=gene-C9F05_RS09490;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=C9F05_RS09490;old_locus_tag=C9F05_09740
NZ_PYKE01000129.1	Protein Homology	CDS	33679	35997	.	+	0	ID=cds-WP_023216665.1;Parent=gene-C9F05_RS09490;Dbxref=GenBank:WP_023216665.1;Name=WP_023216665.1;Ontology_term=GO:0006826,GO:0005525,GO:0015093,GO:0016020;gbkey=CDS;gene=feoB;go_component=membrane|0016020||IEA;go_function=GTP binding|0005525||IEA,ferrous iron transmembrane transporter activity|0015093||IEA;go_process=iron ion transport|0006826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462409.1;locus_tag=C9F05_RS09490;product=Fe(2+) transporter permease subunit FeoB;protein_id=WP_023216665.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	36010	36246	.	+	.	ID=gene-C9F05_RS09495;Name=feoC;gbkey=Gene;gene=feoC;gene_biotype=protein_coding;locus_tag=C9F05_RS09495;old_locus_tag=C9F05_09745
NZ_PYKE01000129.1	Protein Homology	CDS	36010	36246	.	+	0	ID=cds-WP_000157589.1;Parent=gene-C9F05_RS09495;Dbxref=GenBank:WP_000157589.1;Name=WP_000157589.1;gbkey=CDS;gene=feoC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462410.1;locus_tag=C9F05_RS09495;product=[Fe-S]-dependent transcriptional repressor FeoC;protein_id=WP_000157589.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	36481	37407	.	+	.	ID=gene-C9F05_RS09500;Name=C9F05_RS09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09500;old_locus_tag=C9F05_09750
NZ_PYKE01000129.1	Protein Homology	CDS	36481	37407	.	+	0	ID=cds-WP_071054217.1;Parent=gene-C9F05_RS09500;Dbxref=GenBank:WP_071054217.1;Name=WP_071054217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462411.1;locus_tag=C9F05_RS09500;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_071054217.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	37443	38213	.	-	.	ID=gene-C9F05_RS09505;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=C9F05_RS09505;old_locus_tag=C9F05_09755
NZ_PYKE01000129.1	Protein Homology	CDS	37443	38213	.	-	0	ID=cds-WP_000998138.1;Parent=gene-C9F05_RS09505;Dbxref=GenBank:WP_000998138.1;Name=WP_000998138.1;Ontology_term=GO:0052689;gbkey=CDS;gene=bioH;go_function=carboxylic ester hydrolase activity|0052689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462412.1;locus_tag=C9F05_RS09505;product=pimeloyl-ACP methyl ester esterase BioH;protein_id=WP_000998138.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	38251	38934	.	+	.	ID=gene-C9F05_RS09510;Name=gntX;gbkey=Gene;gene=gntX;gene_biotype=protein_coding;locus_tag=C9F05_RS09510;old_locus_tag=C9F05_09760
NZ_PYKE01000129.1	Protein Homology	CDS	38251	38934	.	+	0	ID=cds-WP_000958733.1;Parent=gene-C9F05_RS09510;Dbxref=GenBank:WP_000958733.1;Name=WP_000958733.1;Ontology_term=GO:0009116;gbkey=CDS;gene=gntX;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462413.1;locus_tag=C9F05_RS09510;product=DNA utilization protein GntX;protein_id=WP_000958733.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	38993	39568	.	+	.	ID=gene-C9F05_RS09515;Name=nfuA;gbkey=Gene;gene=nfuA;gene_biotype=protein_coding;locus_tag=C9F05_RS09515;old_locus_tag=C9F05_09765
NZ_PYKE01000129.1	Protein Homology	CDS	38993	39568	.	+	0	ID=cds-WP_000619387.1;Parent=gene-C9F05_RS09515;Dbxref=GenBank:WP_000619387.1;Name=WP_000619387.1;Ontology_term=GO:0016226,GO:0051604,GO:0051539;gbkey=CDS;gene=nfuA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA,protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016942932.1;locus_tag=C9F05_RS09515;product=Fe-S biogenesis protein NfuA;protein_id=WP_000619387.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	39945	41261	.	+	.	ID=gene-C9F05_RS09520;Name=gntT;gbkey=Gene;gene=gntT;gene_biotype=protein_coding;locus_tag=C9F05_RS09520;old_locus_tag=C9F05_09770
NZ_PYKE01000129.1	Protein Homology	CDS	39945	41261	.	+	0	ID=cds-WP_001131737.1;Parent=gene-C9F05_RS09520;Dbxref=GenBank:WP_001131737.1;Name=WP_001131737.1;gbkey=CDS;gene=gntT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462415.1;locus_tag=C9F05_RS09520;product=gluconate transporter;protein_id=WP_001131737.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	41380	43458	.	-	.	ID=gene-C9F05_RS09525;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=C9F05_RS09525;old_locus_tag=C9F05_09775
NZ_PYKE01000129.1	Protein Homology	CDS	41380	43458	.	-	0	ID=cds-WP_000428719.1;Parent=gene-C9F05_RS09525;Dbxref=GenBank:WP_000428719.1;Name=WP_000428719.1;Ontology_term=GO:0005975,GO:0004134;gbkey=CDS;gene=malQ;go_function=4-alpha-glucanotransferase activity|0004134||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462416.1;locus_tag=C9F05_RS09525;product=4-alpha-glucanotransferase;protein_id=WP_000428719.1;transl_table=11
NZ_PYKE01000129.1	RefSeq	gene	43468	45763	.	-	.	ID=gene-C9F05_RS09530;Name=malP;end_range=45763,.;gbkey=Gene;gene=malP;gene_biotype=protein_coding;locus_tag=C9F05_RS09530;old_locus_tag=C9F05_09780;partial=true
NZ_PYKE01000129.1	Protein Homology	CDS	43468	45763	.	-	1	ID=cds-WP_135370213.1;Parent=gene-C9F05_RS09530;Dbxref=GenBank:WP_135370213.1;Name=WP_135370213.1;Ontology_term=GO:0005975,GO:0008184,GO:0030170;end_range=45763,.;gbkey=CDS;gene=malP;go_function=glycogen phosphorylase activity|0008184||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462417.1;locus_tag=C9F05_RS09530;partial=true;product=maltodextrin phosphorylase;protein_id=WP_135370213.1;transl_table=11
##sequence-region NZ_PYKE01000224.1 1 9187
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000224.1	RefSeq	region	1	9187	.	+	.	ID=NZ_PYKE01000224.1:1..9187;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000224.1	RefSeq	pseudogene	1	9092	.	+	.	ID=gene-C9F05_RS14755;Name=siiE;gbkey=Gene;gene=siiE;gene_biotype=pseudogene;locus_tag=C9F05_RS14755;old_locus_tag=C9F05_15170;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000224.1	Protein Homology	CDS	1	9092	.	+	2	ID=cds-C9F05_RS14755;Parent=gene-C9F05_RS14755;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=siiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463126.1;locus_tag=C9F05_RS14755;partial=true;product=non-fimbrial adhesin SiiE;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000342.1 1 42992
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000342.1	RefSeq	region	1	42992	.	+	.	ID=NZ_PYKE01000342.1:1..42992;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000342.1	RefSeq	gene	156	1472	.	+	.	ID=gene-C9F05_RS23120;Name=ugpB;gbkey=Gene;gene=ugpB;gene_biotype=protein_coding;locus_tag=C9F05_RS23120;old_locus_tag=C9F05_23715
NZ_PYKE01000342.1	Protein Homology	CDS	156	1472	.	+	0	ID=cds-WP_000624747.1;Parent=gene-C9F05_RS23120;Dbxref=GenBank:WP_000624747.1;Name=WP_000624747.1;Ontology_term=GO:0055085;gbkey=CDS;gene=ugpB;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462458.1;locus_tag=C9F05_RS23120;product=sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB;protein_id=WP_000624747.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	1577	2464	.	+	.	ID=gene-C9F05_RS23125;Name=ugpA;gbkey=Gene;gene=ugpA;gene_biotype=protein_coding;locus_tag=C9F05_RS23125;old_locus_tag=C9F05_23720
NZ_PYKE01000342.1	Protein Homology	CDS	1577	2464	.	+	0	ID=cds-WP_000099303.1;Parent=gene-C9F05_RS23125;Dbxref=GenBank:WP_000099303.1;Name=WP_000099303.1;gbkey=CDS;gene=ugpA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000099274.1;locus_tag=C9F05_RS23125;product=sn-glycerol-3-phosphate ABC transporter permease UgpA;protein_id=WP_000099303.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	2461	3306	.	+	.	ID=gene-C9F05_RS23130;Name=ugpE;gbkey=Gene;gene=ugpE;gene_biotype=protein_coding;locus_tag=C9F05_RS23130;old_locus_tag=C9F05_23725
NZ_PYKE01000342.1	Protein Homology	CDS	2461	3306	.	+	0	ID=cds-WP_000572196.1;Parent=gene-C9F05_RS23130;Dbxref=GenBank:WP_000572196.1;Name=WP_000572196.1;Ontology_term=GO:0015794,GO:0005886,GO:0055052;gbkey=CDS;gene=ugpE;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_process=glycerol-3-phosphate transmembrane transport|0015794||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000572177.1;locus_tag=C9F05_RS23130;product=sn-glycerol-3-phosphate ABC transporter permease UgpE;protein_id=WP_000572196.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	3308	4378	.	+	.	ID=gene-C9F05_RS23135;Name=C9F05_RS23135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23135;old_locus_tag=C9F05_23730
NZ_PYKE01000342.1	Protein Homology	CDS	3308	4378	.	+	0	ID=cds-WP_000907836.1;Parent=gene-C9F05_RS23135;Dbxref=GenBank:WP_000907836.1;Name=WP_000907836.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462455.1;locus_tag=C9F05_RS23135;product=sn-glycerol-3-phosphate import ATP-binding protein UgpC;protein_id=WP_000907836.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	4375	5115	.	+	.	ID=gene-C9F05_RS23140;Name=ugpQ;gbkey=Gene;gene=ugpQ;gene_biotype=protein_coding;locus_tag=C9F05_RS23140;old_locus_tag=C9F05_23735
NZ_PYKE01000342.1	Protein Homology	CDS	4375	5115	.	+	0	ID=cds-WP_000073548.1;Parent=gene-C9F05_RS23140;Dbxref=GenBank:WP_000073548.1;Name=WP_000073548.1;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;gene=ugpQ;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462454.1;locus_tag=C9F05_RS23140;product=glycerophosphodiester phosphodiesterase;protein_id=WP_000073548.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	5128	5544	.	-	.	ID=gene-C9F05_RS23145;Name=C9F05_RS23145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23145;old_locus_tag=C9F05_23740
NZ_PYKE01000342.1	Protein Homology	CDS	5128	5544	.	-	0	ID=cds-WP_000826046.1;Parent=gene-C9F05_RS23145;Dbxref=GenBank:WP_000826046.1;Name=WP_000826046.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462453.1;locus_tag=C9F05_RS23145;product=DUF2756 family protein;protein_id=WP_000826046.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	5670	7412	.	+	.	ID=gene-C9F05_RS23150;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=C9F05_RS23150;old_locus_tag=C9F05_23745
NZ_PYKE01000342.1	Protein Homology	CDS	5670	7412	.	+	0	ID=cds-WP_135370673.1;Parent=gene-C9F05_RS23150;Dbxref=GenBank:WP_135370673.1;Name=WP_135370673.1;Ontology_term=GO:0006751,GO:0036374;gbkey=CDS;gene=ggt;go_function=glutathione hydrolase activity|0036374||IEA;go_process=glutathione catabolic process|0006751||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462452.1;locus_tag=C9F05_RS23150;product=gamma-glutamyltransferase;protein_id=WP_135370673.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	7457	8491	.	-	.	ID=gene-C9F05_RS23155;Name=C9F05_RS23155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23155;old_locus_tag=C9F05_23750
NZ_PYKE01000342.1	Protein Homology	CDS	7457	8491	.	-	0	ID=cds-WP_135370674.1;Parent=gene-C9F05_RS23155;Dbxref=GenBank:WP_135370674.1;Name=WP_135370674.1;Ontology_term=GO:0008270,GO:0016787;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462451.1;locus_tag=C9F05_RS23155;product=phosphotriesterase family protein;protein_id=WP_135370674.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	8488	9459	.	-	.	ID=gene-C9F05_RS23160;Name=C9F05_RS23160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23160;old_locus_tag=C9F05_23755
NZ_PYKE01000342.1	Protein Homology	CDS	8488	9459	.	-	0	ID=cds-WP_001038949.1;Parent=gene-C9F05_RS23160;Dbxref=GenBank:WP_001038949.1;Name=WP_001038949.1;Ontology_term=GO:0055085,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462450.1;locus_tag=C9F05_RS23160;product=DMT family transporter;protein_id=WP_001038949.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	9513	10274	.	-	.	ID=gene-C9F05_RS23165;Name=C9F05_RS23165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23165;old_locus_tag=C9F05_23760
NZ_PYKE01000342.1	Protein Homology	CDS	9513	10274	.	-	0	ID=cds-WP_001066509.1;Parent=gene-C9F05_RS23165;Dbxref=GenBank:WP_001066509.1;Name=WP_001066509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462449.1;locus_tag=C9F05_RS23165;product=glutamine amidotransferase;protein_id=WP_001066509.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	10290	11504	.	-	.	ID=gene-C9F05_RS23170;Name=C9F05_RS23170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23170;old_locus_tag=C9F05_23765
NZ_PYKE01000342.1	Protein Homology	CDS	10290	11504	.	-	0	ID=cds-WP_131040271.1;Parent=gene-C9F05_RS23170;Dbxref=GenBank:WP_131040271.1;Name=WP_131040271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462448.3;locus_tag=C9F05_RS23170;product=PfkB family carbohydrate kinase;protein_id=WP_131040271.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	11769	12257	.	-	.	ID=gene-C9F05_RS23175;Name=yhhY;gbkey=Gene;gene=yhhY;gene_biotype=protein_coding;locus_tag=C9F05_RS23175;old_locus_tag=C9F05_23770
NZ_PYKE01000342.1	Protein Homology	CDS	11769	12257	.	-	0	ID=cds-WP_001290286.1;Parent=gene-C9F05_RS23175;Dbxref=GenBank:WP_001290286.1;Name=WP_001290286.1;Ontology_term=GO:0008080;gbkey=CDS;gene=yhhY;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462447.1;locus_tag=C9F05_RS23175;product=N-acetyltransferase;protein_id=WP_001290286.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	12725	13762	.	+	.	ID=gene-C9F05_RS23180;Name=C9F05_RS23180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23180;old_locus_tag=C9F05_23775
NZ_PYKE01000342.1	Protein Homology	CDS	12725	13762	.	+	0	ID=cds-WP_079834613.1;Parent=gene-C9F05_RS23180;Dbxref=GenBank:WP_079834613.1;Name=WP_079834613.1;Ontology_term=GO:0000166;gbkey=CDS;go_function=nucleotide binding|0000166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462446.1;locus_tag=C9F05_RS23180;product=oxidoreductase;protein_id=WP_079834613.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	13886	14581	.	+	.	ID=gene-C9F05_RS23185;Name=C9F05_RS23185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23185;old_locus_tag=C9F05_23780
NZ_PYKE01000342.1	Protein Homology	CDS	13886	14581	.	+	0	ID=cds-WP_000639789.1;Parent=gene-C9F05_RS23185;Dbxref=GenBank:WP_000639789.1;Name=WP_000639789.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004213399.1;locus_tag=C9F05_RS23185;product=pirin family protein;protein_id=WP_000639789.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	14711	15706	.	+	.	ID=gene-C9F05_RS23190;Name=gntR;gbkey=Gene;gene=gntR;gene_biotype=protein_coding;locus_tag=C9F05_RS23190;old_locus_tag=C9F05_23785
NZ_PYKE01000342.1	Protein Homology	CDS	14711	15706	.	+	0	ID=cds-WP_000730239.1;Parent=gene-C9F05_RS23190;Dbxref=GenBank:WP_000730239.1;Name=WP_000730239.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=gntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001693277.1;locus_tag=C9F05_RS23190;product=gluconate operon transcriptional repressor GntR;protein_id=WP_000730239.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	15845	16378	.	+	.	ID=gene-C9F05_RS23195;Name=gntK;gbkey=Gene;gene=gntK;gene_biotype=protein_coding;locus_tag=C9F05_RS23195;old_locus_tag=C9F05_23790
NZ_PYKE01000342.1	Protein Homology	CDS	15845	16378	.	+	0	ID=cds-WP_135370675.1;Parent=gene-C9F05_RS23195;Dbxref=GenBank:WP_135370675.1;Name=WP_135370675.1;gbkey=CDS;gene=gntK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462443.1;locus_tag=C9F05_RS23195;product=gluconokinase;protein_id=WP_135370675.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	16375	17715	.	+	.	ID=gene-C9F05_RS23200;Name=gntU;gbkey=Gene;gene=gntU;gene_biotype=protein_coding;locus_tag=C9F05_RS23200;old_locus_tag=C9F05_23795
NZ_PYKE01000342.1	Protein Homology	CDS	16375	17715	.	+	0	ID=cds-WP_000105950.1;Parent=gene-C9F05_RS23200;Dbxref=GenBank:WP_000105950.1;Name=WP_000105950.1;Ontology_term=GO:0035429,GO:0015128,GO:0016020;gbkey=CDS;gene=gntU;go_component=membrane|0016020||IEA;go_function=gluconate transmembrane transporter activity|0015128||IEA;go_process=gluconate transmembrane transport|0035429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462442.1;locus_tag=C9F05_RS23200;product=gluconate transporter;protein_id=WP_000105950.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	pseudogene	17638	18012	.	-	.	ID=gene-C9F05_RS23205;Name=C9F05_RS23205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23205;old_locus_tag=C9F05_23800;partial=true;pseudo=true;start_range=.,17638
NZ_PYKE01000342.1	Protein Homology	CDS	17638	18012	.	-	0	ID=cds-C9F05_RS23205;Parent=gene-C9F05_RS23205;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_452851.1;locus_tag=C9F05_RS23205;partial=true;product=MarC family protein;pseudo=true;start_range=.,17638;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	18139	19245	.	+	.	ID=gene-C9F05_RS23210;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=C9F05_RS23210;old_locus_tag=C9F05_23805
NZ_PYKE01000342.1	Protein Homology	CDS	18139	19245	.	+	0	ID=cds-WP_000799940.1;Parent=gene-C9F05_RS23210;Dbxref=GenBank:WP_000799940.1;Name=WP_000799940.1;Ontology_term=GO:0009086,GO:0009088,GO:0009089,GO:0009097,GO:0004073,GO:0050661;gbkey=CDS;gene=asd;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,NADP binding|0050661||IEA;go_process=methionine biosynthetic process|0009086||IEA,threonine biosynthetic process|0009088||IEA,lysine biosynthetic process via diaminopimelate|0009089||IEA,isoleucine biosynthetic process|0009097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462440.1;locus_tag=C9F05_RS23210;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_000799940.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	19623	21809	.	+	.	ID=gene-C9F05_RS23215;Name=glgB;gbkey=Gene;gene=glgB;gene_biotype=protein_coding;locus_tag=C9F05_RS23215;old_locus_tag=C9F05_23810
NZ_PYKE01000342.1	Protein Homology	CDS	19623	21809	.	+	0	ID=cds-WP_000098552.1;Parent=gene-C9F05_RS23215;Dbxref=GenBank:WP_000098552.1;Name=WP_000098552.1;Ontology_term=GO:0005978,GO:0003844;gbkey=CDS;gene=glgB;go_function=1%2C4-alpha-glucan branching enzyme activity|0003844||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462439.1;locus_tag=C9F05_RS23215;product=1%2C4-alpha-glucan branching enzyme;protein_id=WP_000098552.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	21806	23782	.	+	.	ID=gene-C9F05_RS23220;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=C9F05_RS23220;old_locus_tag=C9F05_23815
NZ_PYKE01000342.1	Protein Homology	CDS	21806	23782	.	+	0	ID=cds-WP_000192491.1;Parent=gene-C9F05_RS23220;Dbxref=GenBank:WP_000192491.1;Name=WP_000192491.1;Ontology_term=GO:0005980,GO:0120549;gbkey=CDS;gene=glgX;go_function=limit dextrin alpha-1%2C6-maltotetraose-hydrolase activity|0120549||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462438.1;locus_tag=C9F05_RS23220;product=glycogen debranching protein GlgX;protein_id=WP_000192491.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	23797	25092	.	+	.	ID=gene-C9F05_RS23225;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;locus_tag=C9F05_RS23225;old_locus_tag=C9F05_23820
NZ_PYKE01000342.1	Protein Homology	CDS	23797	25092	.	+	0	ID=cds-WP_000253995.1;Parent=gene-C9F05_RS23225;Dbxref=GenBank:WP_000253995.1;Name=WP_000253995.1;Ontology_term=GO:0005978,GO:0008878;gbkey=CDS;gene=glgC;go_function=glucose-1-phosphate adenylyltransferase activity|0008878||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462437.1;locus_tag=C9F05_RS23225;product=glucose-1-phosphate adenylyltransferase;protein_id=WP_000253995.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	25092	26525	.	+	.	ID=gene-C9F05_RS23230;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=C9F05_RS23230;old_locus_tag=C9F05_23825
NZ_PYKE01000342.1	Protein Homology	CDS	25092	26525	.	+	0	ID=cds-WP_001197669.1;Parent=gene-C9F05_RS23230;Dbxref=GenBank:WP_001197669.1;Name=WP_001197669.1;Ontology_term=GO:0004373;gbkey=CDS;gene=glgA;go_function=alpha-1%2C4-glucan glucosyltransferase (UDP-glucose donor) activity|0004373||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462436.1;locus_tag=C9F05_RS23230;product=glycogen synthase GlgA;protein_id=WP_001197669.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	26545	28992	.	+	.	ID=gene-C9F05_RS23235;Name=glgP;gbkey=Gene;gene=glgP;gene_biotype=protein_coding;locus_tag=C9F05_RS23235;old_locus_tag=C9F05_23830
NZ_PYKE01000342.1	Protein Homology	CDS	26545	28992	.	+	0	ID=cds-WP_000993428.1;Parent=gene-C9F05_RS23235;Dbxref=GenBank:WP_000993428.1;Name=WP_000993428.1;Ontology_term=GO:0005975,GO:0008184;gbkey=CDS;gene=glgP;go_function=glycogen phosphorylase activity|0008184||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010436446.1;locus_tag=C9F05_RS23235;product=glycogen phosphorylase;protein_id=WP_000993428.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	29170	29925	.	+	.	ID=gene-C9F05_RS23240;Name=C9F05_RS23240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23240;old_locus_tag=C9F05_23835
NZ_PYKE01000342.1	Protein Homology	CDS	29170	29925	.	+	0	ID=cds-WP_000724553.1;Parent=gene-C9F05_RS23240;Dbxref=GenBank:WP_000724553.1;Name=WP_000724553.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462434.1;locus_tag=C9F05_RS23240;product=IclR family transcriptional regulator;protein_id=WP_000724553.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	29969	30874	.	-	.	ID=gene-C9F05_RS23245;Name=C9F05_RS23245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23245;old_locus_tag=C9F05_23840
NZ_PYKE01000342.1	Protein Homology	CDS	29969	30874	.	-	0	ID=cds-WP_000192193.1;Parent=gene-C9F05_RS23245;Dbxref=GenBank:WP_000192193.1;Name=WP_000192193.1;Ontology_term=GO:0071704,GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=obsolete organic substance metabolic process|0071704||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462433.1;locus_tag=C9F05_RS23245;product=dihydrodipicolinate synthase family protein;protein_id=WP_000192193.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	30918	32633	.	-	.	ID=gene-C9F05_RS23250;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=C9F05_RS23250;old_locus_tag=C9F05_23845
NZ_PYKE01000342.1	Protein Homology	CDS	30918	32633	.	-	0	ID=cds-WP_000078497.1;Parent=gene-C9F05_RS23250;Dbxref=GenBank:WP_000078497.1;Name=WP_000078497.1;Ontology_term=GO:0009097,GO:0009099,GO:0000287,GO:0004160,GO:0051536;gbkey=CDS;gene=ilvD;go_function=magnesium ion binding|0000287||IEA,dihydroxy-acid dehydratase activity|0004160||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=isoleucine biosynthetic process|0009097||IEA,L-valine biosynthetic process|0009099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462432.1;locus_tag=C9F05_RS23250;product=dihydroxy-acid dehydratase;protein_id=WP_000078497.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	32630	33964	.	-	.	ID=gene-C9F05_RS23255;Name=C9F05_RS23255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23255;old_locus_tag=C9F05_23850
NZ_PYKE01000342.1	Protein Homology	CDS	32630	33964	.	-	0	ID=cds-WP_001518078.1;Parent=gene-C9F05_RS23255;Dbxref=GenBank:WP_001518078.1;Name=WP_001518078.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001653833.1;locus_tag=C9F05_RS23255;product=MFS transporter;protein_id=WP_001518078.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	34302	35411	.	+	.	ID=gene-C9F05_RS23260;Name=C9F05_RS23260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23260;old_locus_tag=C9F05_23855
NZ_PYKE01000342.1	Protein Homology	CDS	34302	35411	.	+	0	ID=cds-WP_000258839.1;Parent=gene-C9F05_RS23260;Dbxref=GenBank:WP_000258839.1;Name=WP_000258839.1;Ontology_term=GO:0008270,GO:0008888,GO:0030554;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,glycerol dehydrogenase (NAD+) activity|0008888||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462431.1;locus_tag=C9F05_RS23260;product=glycerol dehydrogenase;protein_id=WP_000258839.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	35569	37065	.	+	.	ID=gene-C9F05_RS23265;Name=C9F05_RS23265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23265;old_locus_tag=C9F05_23860
NZ_PYKE01000342.1	Protein Homology	CDS	35569	37065	.	+	0	ID=cds-WP_000786259.1;Parent=gene-C9F05_RS23265;Dbxref=GenBank:WP_000786259.1;Name=WP_000786259.1;Ontology_term=GO:0006817,GO:0022857,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=transmembrane transporter activity|0022857||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000786181.1;locus_tag=C9F05_RS23265;product=PstS family phosphate ABC transporter substrate-binding protein;protein_id=WP_000786259.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	37075	37620	.	+	.	ID=gene-C9F05_RS23270;Name=C9F05_RS23270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23270;old_locus_tag=C9F05_23865
NZ_PYKE01000342.1	Protein Homology	CDS	37075	37620	.	+	0	ID=cds-WP_135370676.1;Parent=gene-C9F05_RS23270;Dbxref=GenBank:WP_135370676.1;Name=WP_135370676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462429.1;locus_tag=C9F05_RS23270;product=hypothetical protein;protein_id=WP_135370676.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	37667	39175	.	-	.	ID=gene-C9F05_RS23275;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=C9F05_RS23275;old_locus_tag=C9F05_23870
NZ_PYKE01000342.1	Protein Homology	CDS	37667	39175	.	-	0	ID=cds-WP_000448180.1;Parent=gene-C9F05_RS23275;Dbxref=GenBank:WP_000448180.1;Name=WP_000448180.1;Ontology_term=GO:0006072,GO:0004368,GO:0009331;gbkey=CDS;gene=glpD;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462428.1;locus_tag=C9F05_RS23275;product=glycerol-3-phosphate dehydrogenase;protein_id=WP_000448180.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	39374	39700	.	+	.	ID=gene-C9F05_RS23280;Name=glpE;gbkey=Gene;gene=glpE;gene_biotype=protein_coding;locus_tag=C9F05_RS23280;old_locus_tag=C9F05_23875
NZ_PYKE01000342.1	Protein Homology	CDS	39374	39700	.	+	0	ID=cds-WP_000434523.1;Parent=gene-C9F05_RS23280;Dbxref=GenBank:WP_000434523.1;Name=WP_000434523.1;Ontology_term=GO:0004792;gbkey=CDS;gene=glpE;go_function=thiosulfate-cyanide sulfurtransferase activity|0004792||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462427.1;locus_tag=C9F05_RS23280;product=thiosulfate sulfurtransferase GlpE;protein_id=WP_000434523.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	39776	40606	.	+	.	ID=gene-C9F05_RS23285;Name=glpG;gbkey=Gene;gene=glpG;gene_biotype=protein_coding;locus_tag=C9F05_RS23285;old_locus_tag=C9F05_23880
NZ_PYKE01000342.1	Protein Homology	CDS	39776	40606	.	+	0	ID=cds-WP_000928702.1;Parent=gene-C9F05_RS23285;Dbxref=GenBank:WP_000928702.1;Name=WP_000928702.1;Ontology_term=GO:0006508,GO:0004252,GO:0016020;gbkey=CDS;gene=glpG;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462426.1;locus_tag=C9F05_RS23285;product=rhomboid family intramembrane serine protease GlpG;protein_id=WP_000928702.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	40700	41458	.	+	.	ID=gene-C9F05_RS23290;Name=C9F05_RS23290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23290;old_locus_tag=C9F05_23885
NZ_PYKE01000342.1	Protein Homology	CDS	40700	41458	.	+	0	ID=cds-WP_135370677.1;Parent=gene-C9F05_RS23290;Dbxref=GenBank:WP_135370677.1;Name=WP_135370677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000815090.1;locus_tag=C9F05_RS23290;product=DeoR/GlpR family transcriptional regulator;protein_id=WP_135370677.1;transl_table=11
NZ_PYKE01000342.1	RefSeq	gene	41455	42992	.	-	.	ID=gene-C9F05_RS23295;Name=rtcR;end_range=42992,.;gbkey=Gene;gene=rtcR;gene_biotype=protein_coding;locus_tag=C9F05_RS23295;old_locus_tag=C9F05_23890;partial=true
NZ_PYKE01000342.1	Protein Homology	CDS	41455	42992	.	-	2	ID=cds-WP_135370678.1;Parent=gene-C9F05_RS23295;Dbxref=GenBank:WP_135370678.1;Name=WP_135370678.1;Ontology_term=GO:0006355,GO:0003700,GO:0005524,GO:0008134;end_range=42992,.;gbkey=CDS;gene=rtcR;go_function=DNA-binding transcription factor activity|0003700||IEA,ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462424.1;locus_tag=C9F05_RS23295;partial=true;product=RNA repair transcriptional activator RtcR;protein_id=WP_135370678.1;transl_table=11
##sequence-region NZ_PYKE01000036.1 1 8738
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000036.1	RefSeq	region	1	8738	.	+	.	ID=NZ_PYKE01000036.1:1..8738;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000036.1	RefSeq	gene	77	1126	.	+	.	ID=gene-C9F05_RS02160;Name=allD;gbkey=Gene;gene=allD;gene_biotype=protein_coding;locus_tag=C9F05_RS02160;old_locus_tag=C9F05_02200
NZ_PYKE01000036.1	Protein Homology	CDS	77	1126	.	+	0	ID=cds-WP_135369993.1;Parent=gene-C9F05_RS02160;Dbxref=GenBank:WP_135369993.1;Name=WP_135369993.1;gbkey=CDS;gene=allD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459523.1;locus_tag=C9F05_RS02160;product=ureidoglycolate dehydrogenase AllD;protein_id=WP_135369993.1;transl_table=11
NZ_PYKE01000036.1	RefSeq	gene	1148	2383	.	+	.	ID=gene-C9F05_RS02165;Name=allC;gbkey=Gene;gene=allC;gene_biotype=protein_coding;locus_tag=C9F05_RS02165;old_locus_tag=C9F05_02205
NZ_PYKE01000036.1	Protein Homology	CDS	1148	2383	.	+	0	ID=cds-WP_000589769.1;Parent=gene-C9F05_RS02165;Dbxref=GenBank:WP_000589769.1;Name=WP_000589769.1;Ontology_term=GO:0000256,GO:0009442,GO:0047652;gbkey=CDS;gene=allC;go_function=allantoate deiminase activity|0047652||IEA;go_process=allantoin catabolic process|0000256||IEA,allantoin assimilation pathway|0009442||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459522.1;locus_tag=C9F05_RS02165;product=allantoate deiminase;protein_id=WP_000589769.1;transl_table=11
NZ_PYKE01000036.1	RefSeq	gene	2394	3179	.	+	.	ID=gene-C9F05_RS02170;Name=allE;gbkey=Gene;gene=allE;gene_biotype=protein_coding;locus_tag=C9F05_RS02170;old_locus_tag=C9F05_02210
NZ_PYKE01000036.1	Protein Homology	CDS	2394	3179	.	+	0	ID=cds-WP_000540985.1;Parent=gene-C9F05_RS02170;Dbxref=GenBank:WP_000540985.1;Name=WP_000540985.1;Ontology_term=GO:0010136,GO:0071522;gbkey=CDS;gene=allE;go_function=ureidoglycine aminohydrolase activity|0071522||IEA;go_process=ureide catabolic process|0010136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459521.1;locus_tag=C9F05_RS02170;product=(S)-ureidoglycine aminohydrolase;protein_id=WP_000540985.1;transl_table=11
NZ_PYKE01000036.1	RefSeq	gene	3259	4407	.	-	.	ID=gene-C9F05_RS02175;Name=glxK;gbkey=Gene;gene=glxK;gene_biotype=protein_coding;locus_tag=C9F05_RS02175;old_locus_tag=C9F05_02215
NZ_PYKE01000036.1	Protein Homology	CDS	3259	4407	.	-	0	ID=cds-WP_135369994.1;Parent=gene-C9F05_RS02175;Dbxref=GenBank:WP_135369994.1;Name=WP_135369994.1;gbkey=CDS;gene=glxK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000706330.1;locus_tag=C9F05_RS02175;product=glycerate 3-kinase;protein_id=WP_135369994.1;transl_table=11
NZ_PYKE01000036.1	RefSeq	gene	4430	5728	.	-	.	ID=gene-C9F05_RS02180;Name=C9F05_RS02180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02180;old_locus_tag=C9F05_02220
NZ_PYKE01000036.1	Protein Homology	CDS	4430	5728	.	-	0	ID=cds-WP_000484505.1;Parent=gene-C9F05_RS02180;Dbxref=GenBank:WP_000484505.1;Name=WP_000484505.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459519.1;locus_tag=C9F05_RS02180;product=uracil/xanthine transporter;protein_id=WP_000484505.1;transl_table=11
NZ_PYKE01000036.1	RefSeq	gene	5787	7148	.	-	.	ID=gene-C9F05_RS02185;Name=allB;gbkey=Gene;gene=allB;gene_biotype=protein_coding;locus_tag=C9F05_RS02185;old_locus_tag=C9F05_02225
NZ_PYKE01000036.1	Protein Homology	CDS	5787	7148	.	-	0	ID=cds-WP_000006865.1;Parent=gene-C9F05_RS02185;Dbxref=GenBank:WP_000006865.1;Name=WP_000006865.1;Ontology_term=GO:0000256,GO:0004038;gbkey=CDS;gene=allB;go_function=allantoinase activity|0004038||IEA;go_process=allantoin catabolic process|0000256||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459518.1;locus_tag=C9F05_RS02185;product=allantoinase AllB;protein_id=WP_000006865.1;transl_table=11
NZ_PYKE01000036.1	RefSeq	gene	7227	8681	.	-	.	ID=gene-C9F05_RS02190;Name=C9F05_RS02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02190;old_locus_tag=C9F05_02230
NZ_PYKE01000036.1	Protein Homology	CDS	7227	8681	.	-	0	ID=cds-WP_000401063.1;Parent=gene-C9F05_RS02190;Dbxref=GenBank:WP_000401063.1;Name=WP_000401063.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415044.4;locus_tag=C9F05_RS02190;product=allantoin transporter;protein_id=WP_000401063.1;transl_table=11
##sequence-region NZ_PYKE01000072.1 1 8647
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000072.1	RefSeq	region	1	8647	.	+	.	ID=NZ_PYKE01000072.1:1..8647;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000072.1	RefSeq	gene	6	722	.	+	.	ID=gene-C9F05_RS04590;Name=safB;gbkey=Gene;gene=safB;gene_biotype=protein_coding;locus_tag=C9F05_RS04590;old_locus_tag=C9F05_04655
NZ_PYKE01000072.1	Protein Homology	CDS	6	722	.	+	0	ID=cds-WP_135370062.1;Parent=gene-C9F05_RS04590;Dbxref=GenBank:WP_135370062.1;Name=WP_135370062.1;gbkey=CDS;gene=safB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000257370.1;locus_tag=C9F05_RS04590;product=pili assembly chaperone SafB;protein_id=WP_135370062.1;transl_table=11
NZ_PYKE01000072.1	RefSeq	gene	746	3256	.	+	.	ID=gene-C9F05_RS04595;Name=C9F05_RS04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04595;old_locus_tag=C9F05_04660
NZ_PYKE01000072.1	Protein Homology	CDS	746	3256	.	+	0	ID=cds-WP_135370059.1;Parent=gene-C9F05_RS04595;Dbxref=GenBank:WP_135370059.1;Name=WP_135370059.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459299.1;locus_tag=C9F05_RS04595;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_135370059.1;transl_table=11
NZ_PYKE01000072.1	RefSeq	gene	3278	3748	.	+	.	ID=gene-C9F05_RS04600;Name=afaD;gbkey=Gene;gene=afaD;gene_biotype=protein_coding;locus_tag=C9F05_RS04600;old_locus_tag=C9F05_04665
NZ_PYKE01000072.1	Protein Homology	CDS	3278	3748	.	+	0	ID=cds-WP_000266939.1;Parent=gene-C9F05_RS04600;Dbxref=GenBank:WP_000266939.1;Name=WP_000266939.1;gbkey=CDS;gene=afaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459300.1;locus_tag=C9F05_RS04600;product=AfaD family invasin;protein_id=WP_000266939.1;transl_table=11
NZ_PYKE01000072.1	RefSeq	gene	4156	4977	.	+	.	ID=gene-C9F05_RS04605;Name=C9F05_RS04605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04605;old_locus_tag=C9F05_04670
NZ_PYKE01000072.1	Protein Homology	CDS	4156	4977	.	+	0	ID=cds-WP_135370060.1;Parent=gene-C9F05_RS04605;Dbxref=GenBank:WP_135370060.1;Name=WP_135370060.1;Ontology_term=GO:0005975,GO:0016787,GO:0016810,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459301.1;locus_tag=C9F05_RS04605;product=polysaccharide deacetylase family protein;protein_id=WP_135370060.1;transl_table=11
NZ_PYKE01000072.1	RefSeq	pseudogene	5060	5297	.	+	.	ID=gene-C9F05_RS04610;Name=C9F05_RS04610;end_range=5297,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS04610;old_locus_tag=C9F05_04675;partial=true;pseudo=true
NZ_PYKE01000072.1	Protein Homology	CDS	5060	5297	.	+	0	ID=cds-C9F05_RS04610;Parent=gene-C9F05_RS04610;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=5297,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012602066.1;locus_tag=C9F05_RS04610;partial=true;product=PerC family transcriptional regulator;pseudo=true;transl_table=11
NZ_PYKE01000072.1	RefSeq	gene	5794	6741	.	+	.	ID=gene-C9F05_RS04615;Name=C9F05_RS04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04615;old_locus_tag=C9F05_04680
NZ_PYKE01000072.1	Protein Homology	CDS	5794	6741	.	+	0	ID=cds-WP_000970302.1;Parent=gene-C9F05_RS04615;Dbxref=GenBank:WP_000970302.1;Name=WP_000970302.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459302.1;locus_tag=C9F05_RS04615;product=LysR family transcriptional regulator;protein_id=WP_000970302.1;transl_table=11
NZ_PYKE01000072.1	RefSeq	gene	6861	7076	.	+	.	ID=gene-C9F05_RS04620;Name=C9F05_RS04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04620;old_locus_tag=C9F05_04685
NZ_PYKE01000072.1	Protein Homology	CDS	6861	7076	.	+	0	ID=cds-WP_001521596.1;Parent=gene-C9F05_RS04620;Dbxref=GenBank:WP_001521596.1;Name=WP_001521596.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459303.1;locus_tag=C9F05_RS04620;product=hypothetical protein;protein_id=WP_001521596.1;transl_table=11
NZ_PYKE01000072.1	RefSeq	gene	7080	7799	.	-	.	ID=gene-C9F05_RS04625;Name=pagN;gbkey=Gene;gene=pagN;gene_biotype=protein_coding;locus_tag=C9F05_RS04625;old_locus_tag=C9F05_04690
NZ_PYKE01000072.1	Protein Homology	CDS	7080	7799	.	-	0	ID=cds-WP_135370061.1;Parent=gene-C9F05_RS04625;Dbxref=GenBank:WP_135370061.1;Name=WP_135370061.1;gbkey=CDS;gene=pagN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459304.1;locus_tag=C9F05_RS04625;product=adhesin/invasin protein PagN;protein_id=WP_135370061.1;transl_table=11
NZ_PYKE01000072.1	RefSeq	gene	8124	8531	.	-	.	ID=gene-C9F05_RS04630;Name=C9F05_RS04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04630;old_locus_tag=C9F05_04695
NZ_PYKE01000072.1	Protein Homology	CDS	8124	8531	.	-	0	ID=cds-WP_001622793.1;Parent=gene-C9F05_RS04630;Dbxref=GenBank:WP_001622793.1;Name=WP_001622793.1;Ontology_term=GO:0006457,GO:0044183,GO:0051082;gbkey=CDS;go_function=protein folding chaperone|0044183||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459305.1;locus_tag=C9F05_RS04630;product=Spy/CpxP family protein refolding chaperone;protein_id=WP_001622793.1;transl_table=11
##sequence-region NZ_PYKE01000273.1 1 8645
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000273.1	RefSeq	region	1	8645	.	+	.	ID=NZ_PYKE01000273.1:1..8645;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000273.1	RefSeq	gene	153	1745	.	-	.	ID=gene-C9F05_RS18145;Name=C9F05_RS18145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18145;old_locus_tag=C9F05_18670
NZ_PYKE01000273.1	Protein Homology	CDS	153	1745	.	-	0	ID=cds-WP_135370518.1;Parent=gene-C9F05_RS18145;Dbxref=GenBank:WP_135370518.1;Name=WP_135370518.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459815.1;locus_tag=C9F05_RS18145;product=ABC-F family ATPase;protein_id=WP_135370518.1;transl_table=11
NZ_PYKE01000273.1	RefSeq	gene	1964	2884	.	+	.	ID=gene-C9F05_RS18150;Name=ldtB;gbkey=Gene;gene=ldtB;gene_biotype=protein_coding;locus_tag=C9F05_RS18150;old_locus_tag=C9F05_18675
NZ_PYKE01000273.1	Protein Homology	CDS	1964	2884	.	+	0	ID=cds-WP_001056404.1;Parent=gene-C9F05_RS18150;Dbxref=GenBank:WP_001056404.1;Name=WP_001056404.1;gbkey=CDS;gene=ldtB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459814.1;locus_tag=C9F05_RS18150;product=L%2CD-transpeptidase;protein_id=WP_001056404.1;transl_table=11
NZ_PYKE01000273.1	RefSeq	gene	2928	4040	.	-	.	ID=gene-C9F05_RS18155;Name=C9F05_RS18155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18155;old_locus_tag=C9F05_18680
NZ_PYKE01000273.1	Protein Homology	CDS	2928	4040	.	-	0	ID=cds-WP_135370519.1;Parent=gene-C9F05_RS18155;Dbxref=GenBank:WP_135370519.1;Name=WP_135370519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459813.1;locus_tag=C9F05_RS18155;product=anion transporter;protein_id=WP_135370519.1;transl_table=11
NZ_PYKE01000273.1	RefSeq	gene	4037	4510	.	-	.	ID=gene-C9F05_RS18160;Name=mntR;gbkey=Gene;gene=mntR;gene_biotype=protein_coding;locus_tag=C9F05_RS18160;old_locus_tag=C9F05_18685
NZ_PYKE01000273.1	Protein Homology	CDS	4037	4510	.	-	0	ID=cds-WP_000533542.1;Parent=gene-C9F05_RS18160;Dbxref=GenBank:WP_000533542.1;Name=WP_000533542.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0046914,GO:0046983;gbkey=CDS;gene=mntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transition metal ion binding|0046914||IEA,protein dimerization activity|0046983||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459812.1;locus_tag=C9F05_RS18160;product=manganese-binding transcriptional regulator MntR;protein_id=WP_000533542.1;transl_table=11
NZ_PYKE01000273.1	RefSeq	gene	4696	4824	.	+	.	ID=gene-C9F05_RS18165;Name=mntS;gbkey=Gene;gene=mntS;gene_biotype=protein_coding;locus_tag=C9F05_RS18165;old_locus_tag=C9F05_18690
NZ_PYKE01000273.1	Protein Homology	CDS	4696	4824	.	+	0	ID=cds-WP_001670439.1;Parent=gene-C9F05_RS18165;Dbxref=GenBank:WP_001670439.1;Name=WP_001670439.1;gbkey=CDS;gene=mntS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_008439233.1;locus_tag=C9F05_RS18165;product=manganase accumulation protein MntS;protein_id=WP_001670439.1;transl_table=11
NZ_PYKE01000273.1	RefSeq	gene	5089	6669	.	+	.	ID=gene-C9F05_RS18170;Name=C9F05_RS18170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18170;old_locus_tag=C9F05_18695
NZ_PYKE01000273.1	Protein Homology	CDS	5089	6669	.	+	0	ID=cds-WP_001089322.1;Parent=gene-C9F05_RS18170;Dbxref=GenBank:WP_001089322.1;Name=WP_001089322.1;Ontology_term=GO:0009244,GO:1900727,GO:0016776;gbkey=CDS;go_function=phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA,osmoregulated periplasmic glucan biosynthetic process|1900727||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459811.1;locus_tag=C9F05_RS18170;product=phosphoethanolamine transferase;protein_id=WP_001089322.1;transl_table=11
NZ_PYKE01000273.1	RefSeq	gene	6732	7247	.	-	.	ID=gene-C9F05_RS18175;Name=ompX;gbkey=Gene;gene=ompX;gene_biotype=protein_coding;locus_tag=C9F05_RS18175;old_locus_tag=C9F05_18700
NZ_PYKE01000273.1	Protein Homology	CDS	6732	7247	.	-	0	ID=cds-WP_000716763.1;Parent=gene-C9F05_RS18175;Dbxref=GenBank:WP_000716763.1;Name=WP_000716763.1;gbkey=CDS;gene=ompX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459810.1;locus_tag=C9F05_RS18175;product=outer membrane protein OmpX;protein_id=WP_000716763.1;transl_table=11
NZ_PYKE01000273.1	RefSeq	gene	7601	8488	.	+	.	ID=gene-C9F05_RS18180;Name=rhtA;gbkey=Gene;gene=rhtA;gene_biotype=protein_coding;locus_tag=C9F05_RS18180;old_locus_tag=C9F05_18705
NZ_PYKE01000273.1	Protein Homology	CDS	7601	8488	.	+	0	ID=cds-WP_001119554.1;Parent=gene-C9F05_RS18180;Dbxref=GenBank:WP_001119554.1;Name=WP_001119554.1;gbkey=CDS;gene=rhtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459809.1;locus_tag=C9F05_RS18180;product=threonine/homoserine exporter RhtA;protein_id=WP_001119554.1;transl_table=11
##sequence-region NZ_PYKE01000078.1 1 40933
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000078.1	RefSeq	region	1	40933	.	+	.	ID=NZ_PYKE01000078.1:1..40933;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000078.1	RefSeq	gene	191	934	.	+	.	ID=gene-C9F05_RS05130;Name=C9F05_RS05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05130;old_locus_tag=C9F05_05215
NZ_PYKE01000078.1	Protein Homology	CDS	191	934	.	+	0	ID=cds-WP_135370084.1;Parent=gene-C9F05_RS05130;Dbxref=GenBank:WP_135370084.1;Name=WP_135370084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459816.1;locus_tag=C9F05_RS05130;product=DUF4261 domain-containing protein;protein_id=WP_135370084.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	pseudogene	963	1694	.	-	.	ID=gene-C9F05_RS05135;Name=C9F05_RS05135;end_range=1694,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS05135;old_locus_tag=C9F05_05220;partial=true;pseudo=true
NZ_PYKE01000078.1	Protein Homology	CDS	963	1694	.	-	0	ID=cds-C9F05_RS05135;Parent=gene-C9F05_RS05135;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016787;end_range=1694,.;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000114249.1;locus_tag=C9F05_RS05135;partial=true;product=Cof-type HAD-IIB family hydrolase;pseudo=true;transl_table=11
NZ_PYKE01000078.1	RefSeq	pseudogene	1685	1768	.	+	.	ID=gene-C9F05_RS24095;Name=C9F05_RS24095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24095;partial=true;pseudo=true;start_range=.,1685
NZ_PYKE01000078.1	Protein Homology	CDS	1685	1768	.	+	0	ID=cds-C9F05_RS24095;Parent=gene-C9F05_RS24095;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000961428.1;locus_tag=C9F05_RS24095;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1685;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	1890	3155	.	-	.	ID=gene-C9F05_RS05140;Name=C9F05_RS05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05140;old_locus_tag=C9F05_05225
NZ_PYKE01000078.1	Protein Homology	CDS	1890	3155	.	-	0	ID=cds-WP_017465720.1;Parent=gene-C9F05_RS05140;Dbxref=GenBank:WP_017465720.1;Name=WP_017465720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459818.1;locus_tag=C9F05_RS05140;product=DUF1479 domain-containing protein;protein_id=WP_017465720.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	3417	4226	.	+	.	ID=gene-C9F05_RS05145;Name=C9F05_RS05145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05145;old_locus_tag=C9F05_05230
NZ_PYKE01000078.1	Protein Homology	CDS	3417	4226	.	+	0	ID=cds-WP_000217910.1;Parent=gene-C9F05_RS05145;Dbxref=GenBank:WP_000217910.1;Name=WP_000217910.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459819.1;locus_tag=C9F05_RS05145;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_000217910.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	4304	6736	.	-	.	ID=gene-C9F05_RS05150;Name=C9F05_RS05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05150;old_locus_tag=C9F05_05235
NZ_PYKE01000078.1	Protein Homology	CDS	4304	6736	.	-	0	ID=cds-WP_135370079.1;Parent=gene-C9F05_RS05150;Dbxref=GenBank:WP_135370079.1;Name=WP_135370079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459820.1;locus_tag=C9F05_RS05150;product=glycyl radical protein;protein_id=WP_135370079.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	6742	7641	.	-	.	ID=gene-C9F05_RS05155;Name=C9F05_RS05155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05155;old_locus_tag=C9F05_05240
NZ_PYKE01000078.1	Protein Homology	CDS	6742	7641	.	-	0	ID=cds-WP_000576947.1;Parent=gene-C9F05_RS05155;Dbxref=GenBank:WP_000576947.1;Name=WP_000576947.1;Ontology_term=GO:0043687,GO:0051539,GO:1904047;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=post-translational protein modification|0043687||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459821.1;locus_tag=C9F05_RS05155;product=glycyl-radical enzyme activating protein;protein_id=WP_000576947.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	7919	8668	.	-	.	ID=gene-C9F05_RS05160;Name=moeB;gbkey=Gene;gene=moeB;gene_biotype=protein_coding;locus_tag=C9F05_RS05160;old_locus_tag=C9F05_05245
NZ_PYKE01000078.1	Protein Homology	CDS	7919	8668	.	-	0	ID=cds-WP_000829280.1;Parent=gene-C9F05_RS05160;Dbxref=GenBank:WP_000829280.1;Name=WP_000829280.1;Ontology_term=GO:0006777,GO:0008641;gbkey=CDS;gene=moeB;go_function=ubiquitin-like modifier activating enzyme activity|0008641||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459822.1;locus_tag=C9F05_RS05160;product=molybdopterin-synthase adenylyltransferase MoeB;protein_id=WP_000829280.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	8668	9903	.	-	.	ID=gene-C9F05_RS05165;Name=moeA;gbkey=Gene;gene=moeA;gene_biotype=protein_coding;locus_tag=C9F05_RS05165;old_locus_tag=C9F05_05250
NZ_PYKE01000078.1	Protein Homology	CDS	8668	9903	.	-	0	ID=cds-WP_000395790.1;Parent=gene-C9F05_RS05165;Dbxref=GenBank:WP_000395790.1;Name=WP_000395790.1;Ontology_term=GO:0006777,GO:0032324;gbkey=CDS;gene=moeA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA,molybdopterin cofactor biosynthetic process|0032324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308932.1;locus_tag=C9F05_RS05165;product=molybdopterin molybdotransferase MoeA;protein_id=WP_000395790.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	10106	11047	.	+	.	ID=gene-C9F05_RS05170;Name=iaaA;gbkey=Gene;gene=iaaA;gene_biotype=protein_coding;locus_tag=C9F05_RS05170;old_locus_tag=C9F05_05255
NZ_PYKE01000078.1	Protein Homology	CDS	10106	11047	.	+	0	ID=cds-WP_001030503.1;Parent=gene-C9F05_RS05170;Dbxref=GenBank:WP_001030503.1;Name=WP_001030503.1;gbkey=CDS;gene=iaaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459824.1;locus_tag=C9F05_RS05170;product=beta-aspartyl-peptidase;protein_id=WP_001030503.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	11058	12929	.	+	.	ID=gene-C9F05_RS05175;Name=gsiA;gbkey=Gene;gene=gsiA;gene_biotype=protein_coding;locus_tag=C9F05_RS05175;old_locus_tag=C9F05_05260
NZ_PYKE01000078.1	Protein Homology	CDS	11058	12929	.	+	0	ID=cds-WP_135370080.1;Parent=gene-C9F05_RS05175;Dbxref=GenBank:WP_135370080.1;Name=WP_135370080.1;Ontology_term=GO:0006810,GO:0000166,GO:0005524;gbkey=CDS;gene=gsiA;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459825.1;locus_tag=C9F05_RS05175;product=glutathione ABC transporter ATP-binding protein GsiA;protein_id=WP_135370080.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	12962	14500	.	+	.	ID=gene-C9F05_RS05180;Name=gsiB;gbkey=Gene;gene=gsiB;gene_biotype=protein_coding;locus_tag=C9F05_RS05180;old_locus_tag=C9F05_05265
NZ_PYKE01000078.1	Protein Homology	CDS	12962	14500	.	+	0	ID=cds-WP_000191440.1;Parent=gene-C9F05_RS05180;Dbxref=GenBank:WP_000191440.1;Name=WP_000191440.1;Ontology_term=GO:0034775,GO:0034634,GO:0043190;gbkey=CDS;gene=gsiB;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=glutathione transmembrane transporter activity|0034634||IEA;go_process=glutathione transmembrane transport|0034775||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459826.1;locus_tag=C9F05_RS05180;product=glutathione ABC transporter substrate-binding protein GsiB;protein_id=WP_000191440.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	14561	15481	.	+	.	ID=gene-C9F05_RS05185;Name=gsiC;gbkey=Gene;gene=gsiC;gene_biotype=protein_coding;locus_tag=C9F05_RS05185;old_locus_tag=C9F05_05270
NZ_PYKE01000078.1	Protein Homology	CDS	14561	15481	.	+	0	ID=cds-WP_000936066.1;Parent=gene-C9F05_RS05185;Dbxref=GenBank:WP_000936066.1;Name=WP_000936066.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=gsiC;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459827.1;locus_tag=C9F05_RS05185;product=glutathione ABC transporter permease GsiC;protein_id=WP_000936066.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	15484	16395	.	+	.	ID=gene-C9F05_RS05190;Name=gsiD;gbkey=Gene;gene=gsiD;gene_biotype=protein_coding;locus_tag=C9F05_RS05190;old_locus_tag=C9F05_05275
NZ_PYKE01000078.1	Protein Homology	CDS	15484	16395	.	+	0	ID=cds-WP_001236024.1;Parent=gene-C9F05_RS05190;Dbxref=GenBank:WP_001236024.1;Name=WP_001236024.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=gsiD;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459828.1;locus_tag=C9F05_RS05190;product=glutathione ABC transporter permease GsiD;protein_id=WP_001236024.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	16486	17811	.	-	.	ID=gene-C9F05_RS05195;Name=rimO;gbkey=Gene;gene=rimO;gene_biotype=protein_coding;locus_tag=C9F05_RS05195;old_locus_tag=C9F05_05280
NZ_PYKE01000078.1	Protein Homology	CDS	16486	17811	.	-	0	ID=cds-WP_000073313.1;Parent=gene-C9F05_RS05195;Dbxref=GenBank:WP_000073313.1;Name=WP_000073313.1;Ontology_term=GO:0018339,GO:0008172,GO:0016740,GO:0016782,GO:0051539,GO:1904047,GO:0005737;gbkey=CDS;gene=rimO;go_component=cytoplasm|0005737||IEA;go_function=S-methyltransferase activity|0008172||IEA,transferase activity|0016740||IEA,transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid|0018339||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459829.1;locus_tag=C9F05_RS05195;product=30S ribosomal protein S12 methylthiotransferase RimO;protein_id=WP_000073313.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	18042	18425	.	+	.	ID=gene-C9F05_RS05200;Name=bssR;gbkey=Gene;gene=bssR;gene_biotype=protein_coding;locus_tag=C9F05_RS05200;old_locus_tag=C9F05_05285
NZ_PYKE01000078.1	Protein Homology	CDS	18042	18425	.	+	0	ID=cds-WP_071055290.1;Parent=gene-C9F05_RS05200;Dbxref=GenBank:WP_071055290.1;Name=WP_071055290.1;gbkey=CDS;gene=bssR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459830.1;locus_tag=C9F05_RS05200;product=biofilm formation regulator BssR;protein_id=WP_071055290.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	18543	19664	.	+	.	ID=gene-C9F05_RS05205;Name=C9F05_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05205;old_locus_tag=C9F05_05290
NZ_PYKE01000078.1	Protein Homology	CDS	18543	19664	.	+	0	ID=cds-WP_017441945.1;Parent=gene-C9F05_RS05205;Dbxref=GenBank:WP_017441945.1;Name=WP_017441945.1;Ontology_term=GO:0016901,GO:0070968;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C quinone or similar compound as acceptor|0016901||IEA,pyrroloquinoline quinone binding|0070968||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001252732.1;locus_tag=C9F05_RS05205;product=PQQ-dependent sugar dehydrogenase;protein_id=WP_017441945.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	19661	20287	.	-	.	ID=gene-C9F05_RS05210;Name=C9F05_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05210;old_locus_tag=C9F05_05295
NZ_PYKE01000078.1	Protein Homology	CDS	19661	20287	.	-	0	ID=cds-WP_135370081.1;Parent=gene-C9F05_RS05210;Dbxref=GenBank:WP_135370081.1;Name=WP_135370081.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459839.1;locus_tag=C9F05_RS05210;product=glutathione S-transferase family protein;protein_id=WP_135370081.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	20531	21733	.	+	.	ID=gene-C9F05_RS05215;Name=dacC;gbkey=Gene;gene=dacC;gene_biotype=protein_coding;locus_tag=C9F05_RS05215;old_locus_tag=C9F05_05300
NZ_PYKE01000078.1	Protein Homology	CDS	20531	21733	.	+	0	ID=cds-WP_135370082.1;Parent=gene-C9F05_RS05215;Dbxref=GenBank:WP_135370082.1;Name=WP_135370082.1;gbkey=CDS;gene=dacC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459840.1;locus_tag=C9F05_RS05215;product=serine-type D-Ala-D-Ala carboxypeptidase;protein_id=WP_135370082.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	21778	22536	.	-	.	ID=gene-C9F05_RS05220;Name=deoR;gbkey=Gene;gene=deoR;gene_biotype=protein_coding;locus_tag=C9F05_RS05220;old_locus_tag=C9F05_05305
NZ_PYKE01000078.1	Protein Homology	CDS	21778	22536	.	-	0	ID=cds-WP_000450101.1;Parent=gene-C9F05_RS05220;Dbxref=GenBank:WP_000450101.1;Name=WP_000450101.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=deoR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459841.1;locus_tag=C9F05_RS05220;product=DNA-binding transcriptional repressor DeoR;protein_id=WP_000450101.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	22608	23216	.	-	.	ID=gene-C9F05_RS05225;Name=ybjG;gbkey=Gene;gene=ybjG;gene_biotype=protein_coding;locus_tag=C9F05_RS05225;old_locus_tag=C9F05_05310
NZ_PYKE01000078.1	Protein Homology	CDS	22608	23216	.	-	0	ID=cds-WP_001531378.1;Parent=gene-C9F05_RS05225;Dbxref=GenBank:WP_001531378.1;Name=WP_001531378.1;Ontology_term=GO:0050380,GO:0005886;gbkey=CDS;gene=ybjG;go_component=plasma membrane|0005886||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459842.1;locus_tag=C9F05_RS05225;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_001531378.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	23529	24761	.	+	.	ID=gene-C9F05_RS05230;Name=C9F05_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05230;old_locus_tag=C9F05_05315
NZ_PYKE01000078.1	Protein Homology	CDS	23529	24761	.	+	0	ID=cds-WP_001181284.1;Parent=gene-C9F05_RS05230;Dbxref=GenBank:WP_001181284.1;Name=WP_001181284.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459843.1;locus_tag=C9F05_RS05230;product=MFS transporter;protein_id=WP_001181284.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	24815	25630	.	-	.	ID=gene-C9F05_RS05235;Name=C9F05_RS05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05235;old_locus_tag=C9F05_05320
NZ_PYKE01000078.1	Protein Homology	CDS	24815	25630	.	-	0	ID=cds-WP_001617070.1;Parent=gene-C9F05_RS05235;Dbxref=GenBank:WP_001617070.1;Name=WP_001617070.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459844.1;locus_tag=C9F05_RS05235;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_001617070.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	25627	26838	.	-	.	ID=gene-C9F05_RS05240;Name=C9F05_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05240;old_locus_tag=C9F05_05325
NZ_PYKE01000078.1	Protein Homology	CDS	25627	26838	.	-	0	ID=cds-WP_000217430.1;Parent=gene-C9F05_RS05240;Dbxref=GenBank:WP_000217430.1;Name=WP_000217430.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459845.1;locus_tag=C9F05_RS05240;product=MFS transporter;protein_id=WP_000217430.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	27006	27566	.	+	.	ID=gene-C9F05_RS05245;Name=C9F05_RS05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05245;old_locus_tag=C9F05_05330
NZ_PYKE01000078.1	Protein Homology	CDS	27006	27566	.	+	0	ID=cds-WP_000661880.1;Parent=gene-C9F05_RS05245;Dbxref=GenBank:WP_000661880.1;Name=WP_000661880.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000661880.1;locus_tag=C9F05_RS05245;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000661880.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	27743	29428	.	-	.	ID=gene-C9F05_RS05255;Name=C9F05_RS05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05255;old_locus_tag=C9F05_05340
NZ_PYKE01000078.1	Protein Homology	CDS	27743	29428	.	-	0	ID=cds-WP_001024853.1;Parent=gene-C9F05_RS05255;Dbxref=GenBank:WP_001024853.1;Name=WP_001024853.1;Ontology_term=GO:0006813,GO:0008324;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001024888.1;locus_tag=C9F05_RS05255;product=aspartate:alanine antiporter;protein_id=WP_001024853.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	29699	30076	.	+	.	ID=gene-C9F05_RS05260;Name=C9F05_RS05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05260;old_locus_tag=C9F05_05350
NZ_PYKE01000078.1	Protein Homology	CDS	29699	30076	.	+	0	ID=cds-WP_000680850.1;Parent=gene-C9F05_RS05260;Dbxref=GenBank:WP_000680850.1;Name=WP_000680850.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459848.1;locus_tag=C9F05_RS05260;product=inner membrane protein YbjM;protein_id=WP_000680850.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	30108	30371	.	-	.	ID=gene-C9F05_RS05265;Name=C9F05_RS05265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05265;old_locus_tag=C9F05_05355
NZ_PYKE01000078.1	Protein Homology	CDS	30108	30371	.	-	0	ID=cds-WP_000495513.1;Parent=gene-C9F05_RS05265;Dbxref=GenBank:WP_000495513.1;Name=WP_000495513.1;Ontology_term=GO:0045454,GO:0009055,GO:0015035;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,protein-disulfide reductase activity|0015035||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459849.1;locus_tag=C9F05_RS05265;product=GrxA family glutaredoxin;protein_id=WP_000495513.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	30541	30831	.	+	.	ID=gene-C9F05_RS05270;Name=C9F05_RS05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05270;old_locus_tag=C9F05_05360
NZ_PYKE01000078.1	Protein Homology	CDS	30541	30831	.	+	0	ID=cds-WP_001259131.1;Parent=gene-C9F05_RS05270;Dbxref=GenBank:WP_001259131.1;Name=WP_001259131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459850.1;locus_tag=C9F05_RS05270;product=YbjC family protein;protein_id=WP_001259131.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	30815	31537	.	+	.	ID=gene-C9F05_RS05275;Name=nfsA;gbkey=Gene;gene=nfsA;gene_biotype=protein_coding;locus_tag=C9F05_RS05275;old_locus_tag=C9F05_05365
NZ_PYKE01000078.1	Protein Homology	CDS	30815	31537	.	+	0	ID=cds-WP_000075300.1;Parent=gene-C9F05_RS05275;Dbxref=GenBank:WP_000075300.1;Name=WP_000075300.1;gbkey=CDS;gene=nfsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459851.1;locus_tag=C9F05_RS05275;product=nitroreductase NfsA;protein_id=WP_000075300.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	31595	32497	.	+	.	ID=gene-C9F05_RS05280;Name=rimK;gbkey=Gene;gene=rimK;gene_biotype=protein_coding;locus_tag=C9F05_RS05280;old_locus_tag=C9F05_05370
NZ_PYKE01000078.1	Protein Homology	CDS	31595	32497	.	+	0	ID=cds-WP_000684361.1;Parent=gene-C9F05_RS05280;Dbxref=GenBank:WP_000684361.1;Name=WP_000684361.1;Ontology_term=GO:0036211,GO:0005524,GO:0046872;gbkey=CDS;gene=rimK;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459852.1;locus_tag=C9F05_RS05280;product=30S ribosomal protein S6--L-glutamate ligase;protein_id=WP_000684361.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	32594	33070	.	+	.	ID=gene-C9F05_RS05285;Name=C9F05_RS05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05285;old_locus_tag=C9F05_05375
NZ_PYKE01000078.1	Protein Homology	CDS	32594	33070	.	+	0	ID=cds-WP_000624813.1;Parent=gene-C9F05_RS05285;Dbxref=GenBank:WP_000624813.1;Name=WP_000624813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459853.1;locus_tag=C9F05_RS05285;product=YbjN domain-containing protein;protein_id=WP_000624813.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	33419	34531	.	+	.	ID=gene-C9F05_RS05290;Name=potF;gbkey=Gene;gene=potF;gene_biotype=protein_coding;locus_tag=C9F05_RS05290;old_locus_tag=C9F05_05380
NZ_PYKE01000078.1	Protein Homology	CDS	33419	34531	.	+	0	ID=cds-WP_000125769.1;Parent=gene-C9F05_RS05290;Dbxref=GenBank:WP_000125769.1;Name=WP_000125769.1;Ontology_term=GO:0015846,GO:0019808,GO:0042597;gbkey=CDS;gene=potF;go_component=periplasmic space|0042597||IEA;go_function=polyamine binding|0019808||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459854.1;locus_tag=C9F05_RS05290;product=spermidine/putrescine ABC transporter substrate-binding protein PotF;protein_id=WP_000125769.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	34619	35752	.	+	.	ID=gene-C9F05_RS05295;Name=potG;gbkey=Gene;gene=potG;gene_biotype=protein_coding;locus_tag=C9F05_RS05295;old_locus_tag=C9F05_05385
NZ_PYKE01000078.1	Protein Homology	CDS	34619	35752	.	+	0	ID=cds-WP_135370083.1;Parent=gene-C9F05_RS05295;Dbxref=GenBank:WP_135370083.1;Name=WP_135370083.1;Ontology_term=GO:0015846,GO:0055085,GO:0005524,GO:0015417,GO:0022857,GO:0043190;gbkey=CDS;gene=potG;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type polyamine transporter activity|0015417||IEA,transmembrane transporter activity|0022857||IEA;go_process=polyamine transport|0015846||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000996010.1;locus_tag=C9F05_RS05295;product=putrescine ABC transporter ATP-binding subunit PotG;protein_id=WP_135370083.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	35762	36715	.	+	.	ID=gene-C9F05_RS05300;Name=potH;gbkey=Gene;gene=potH;gene_biotype=protein_coding;locus_tag=C9F05_RS05300;old_locus_tag=C9F05_05390
NZ_PYKE01000078.1	Protein Homology	CDS	35762	36715	.	+	0	ID=cds-WP_000105453.1;Parent=gene-C9F05_RS05300;Dbxref=GenBank:WP_000105453.1;Name=WP_000105453.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=potH;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459856.1;locus_tag=C9F05_RS05300;product=putrescine ABC transporter permease PotH;protein_id=WP_000105453.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	36712	37557	.	+	.	ID=gene-C9F05_RS05305;Name=potI;gbkey=Gene;gene=potI;gene_biotype=protein_coding;locus_tag=C9F05_RS05305;old_locus_tag=C9F05_05395
NZ_PYKE01000078.1	Protein Homology	CDS	36712	37557	.	+	0	ID=cds-WP_001061629.1;Parent=gene-C9F05_RS05305;Dbxref=GenBank:WP_001061629.1;Name=WP_001061629.1;Ontology_term=GO:0055085;gbkey=CDS;gene=potI;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459857.1;locus_tag=C9F05_RS05305;product=putrescine ABC transporter permease PotI;protein_id=WP_001061629.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	37631	38104	.	+	.	ID=gene-C9F05_RS05310;Name=C9F05_RS05310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05310;old_locus_tag=C9F05_05400
NZ_PYKE01000078.1	Protein Homology	CDS	37631	38104	.	+	0	ID=cds-WP_000505788.1;Parent=gene-C9F05_RS05310;Dbxref=GenBank:WP_000505788.1;Name=WP_000505788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459858.1;locus_tag=C9F05_RS05310;product=YbjO family protein;protein_id=WP_000505788.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	38147	39274	.	+	.	ID=gene-C9F05_RS05315;Name=rlmC;gbkey=Gene;gene=rlmC;gene_biotype=protein_coding;locus_tag=C9F05_RS05315;old_locus_tag=C9F05_05405
NZ_PYKE01000078.1	Protein Homology	CDS	38147	39274	.	+	0	ID=cds-WP_001149792.1;Parent=gene-C9F05_RS05315;Dbxref=GenBank:WP_001149792.1;Name=WP_001149792.1;Ontology_term=GO:0000154,GO:0016070,GO:0008649;gbkey=CDS;gene=rlmC;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=rRNA modification|0000154||IEA,RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001149796.1;locus_tag=C9F05_RS05315;product=23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;protein_id=WP_001149792.1;transl_table=11
NZ_PYKE01000078.1	RefSeq	gene	39569	40912	.	+	.	ID=gene-C9F05_RS05320;Name=C9F05_RS05320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05320;old_locus_tag=C9F05_05410
NZ_PYKE01000078.1	Protein Homology	CDS	39569	40912	.	+	0	ID=cds-WP_000399323.1;Parent=gene-C9F05_RS05320;Dbxref=GenBank:WP_000399323.1;Name=WP_000399323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459860.1;locus_tag=C9F05_RS05320;product=PTS sugar transporter subunit IIC;protein_id=WP_000399323.1;transl_table=11
##sequence-region NZ_PYKE01000338.1 1 8599
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000338.1	RefSeq	region	1	8599	.	+	.	ID=NZ_PYKE01000338.1:1..8599;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000338.1	RefSeq	pseudogene	1	276	.	-	.	ID=gene-C9F05_RS22690;Name=C9F05_RS22690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS22690;old_locus_tag=C9F05_23285;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000338.1	Protein Homology	CDS	1	276	.	-	0	ID=cds-C9F05_RS22690;Parent=gene-C9F05_RS22690;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460224.1;locus_tag=C9F05_RS22690;partial=true;product=ABC transporter permease;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000338.1	RefSeq	pseudogene	266	1241	.	-	.	ID=gene-C9F05_RS22695;Name=C9F05_RS22695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS22695;old_locus_tag=C9F05_23290;pseudo=true
NZ_PYKE01000338.1	Protein Homology	CDS	266	1241	.	-	0	ID=cds-C9F05_RS22695;Parent=gene-C9F05_RS22695;Note=frameshifted;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460223.1;locus_tag=C9F05_RS22695;product=ABC transporter permease;pseudo=true;transl_table=11
NZ_PYKE01000338.1	RefSeq	gene	1241	2875	.	-	.	ID=gene-C9F05_RS22700;Name=C9F05_RS22700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22700;old_locus_tag=C9F05_23295
NZ_PYKE01000338.1	Protein Homology	CDS	1241	2875	.	-	0	ID=cds-WP_000946086.1;Parent=gene-C9F05_RS22700;Dbxref=GenBank:WP_000946086.1;Name=WP_000946086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460222.1;locus_tag=C9F05_RS22700;product=ABC transporter substrate-binding protein;protein_id=WP_000946086.1;transl_table=11
NZ_PYKE01000338.1	RefSeq	gene	3557	3871	.	+	.	ID=gene-C9F05_RS22705;Name=C9F05_RS22705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22705;old_locus_tag=C9F05_23300
NZ_PYKE01000338.1	Protein Homology	CDS	3557	3871	.	+	0	ID=cds-WP_000182479.1;Parent=gene-C9F05_RS22705;Dbxref=GenBank:WP_000182479.1;Name=WP_000182479.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460221.1;locus_tag=C9F05_RS22705;product=TRL-like family protein;protein_id=WP_000182479.1;transl_table=11
NZ_PYKE01000338.1	RefSeq	gene	4020	4550	.	+	.	ID=gene-C9F05_RS22710;Name=C9F05_RS22710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22710;old_locus_tag=C9F05_23305
NZ_PYKE01000338.1	Protein Homology	CDS	4020	4550	.	+	0	ID=cds-WP_000929974.1;Parent=gene-C9F05_RS22710;Dbxref=GenBank:WP_000929974.1;Name=WP_000929974.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460220.1;locus_tag=C9F05_RS22710;product=cytochrome b;protein_id=WP_000929974.1;transl_table=11
NZ_PYKE01000338.1	RefSeq	gene	4633	5676	.	-	.	ID=gene-C9F05_RS22715;Name=C9F05_RS22715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22715;old_locus_tag=C9F05_23310
NZ_PYKE01000338.1	Protein Homology	CDS	4633	5676	.	-	0	ID=cds-WP_135370662.1;Parent=gene-C9F05_RS22715;Dbxref=GenBank:WP_135370662.1;Name=WP_135370662.1;Ontology_term=GO:0005975,GO:0004308,GO:0016997;gbkey=CDS;go_function=exo-alpha-sialidase activity|0004308||IEA,alpha-sialidase activity|0016997||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460219.1;locus_tag=C9F05_RS22715;product=sialidase family protein;protein_id=WP_135370662.1;transl_table=11
NZ_PYKE01000338.1	RefSeq	gene	6015	6482	.	-	.	ID=gene-C9F05_RS22725;Name=C9F05_RS22725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22725;old_locus_tag=C9F05_23320
NZ_PYKE01000338.1	Protein Homology	CDS	6015	6482	.	-	0	ID=cds-WP_001218118.1;Parent=gene-C9F05_RS22725;Dbxref=GenBank:WP_001218118.1;Name=WP_001218118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460218.1;locus_tag=C9F05_RS22725;product=Hsp20 family protein;protein_id=WP_001218118.1;transl_table=11
NZ_PYKE01000338.1	RefSeq	pseudogene	6634	6906	.	-	.	ID=gene-C9F05_RS22730;Name=C9F05_RS22730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS22730;old_locus_tag=C9F05_23325;pseudo=true
NZ_PYKE01000338.1	Protein Homology	CDS	6634	6906	.	-	0	ID=cds-C9F05_RS22730;Parent=gene-C9F05_RS22730;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460217.1;locus_tag=C9F05_RS22730;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000338.1	RefSeq	gene	7609	7953	.	+	.	ID=gene-C9F05_RS22740;Name=C9F05_RS22740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22740;old_locus_tag=C9F05_23335
NZ_PYKE01000338.1	Protein Homology	CDS	7609	7953	.	+	0	ID=cds-WP_000977728.1;Parent=gene-C9F05_RS22740;Dbxref=GenBank:WP_000977728.1;Name=WP_000977728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460216.1;locus_tag=C9F05_RS22740;product=c-type lysozyme inhibitor;protein_id=WP_000977728.1;transl_table=11
##sequence-region NZ_PYKE01000077.1 1 8558
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000077.1	RefSeq	region	1	8558	.	+	.	ID=NZ_PYKE01000077.1:1..8558;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000077.1	RefSeq	gene	877	1560	.	+	.	ID=gene-C9F05_RS05090;Name=C9F05_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05090;old_locus_tag=C9F05_05175
NZ_PYKE01000077.1	Protein Homology	CDS	877	1560	.	+	0	ID=cds-WP_115285027.1;Parent=gene-C9F05_RS05090;Dbxref=GenBank:WP_115285027.1;Name=WP_115285027.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462039.1;locus_tag=C9F05_RS05090;product=helix-turn-helix transcriptional regulator;protein_id=WP_115285027.1;transl_table=11
NZ_PYKE01000077.1	RefSeq	gene	1665	2222	.	-	.	ID=gene-C9F05_RS05095;Name=C9F05_RS05095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05095;old_locus_tag=C9F05_05180
NZ_PYKE01000077.1	Protein Homology	CDS	1665	2222	.	-	0	ID=cds-WP_000100101.1;Parent=gene-C9F05_RS05095;Dbxref=GenBank:WP_000100101.1;Name=WP_000100101.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462040.1;locus_tag=C9F05_RS05095;product=DUF3156 family protein;protein_id=WP_000100101.1;transl_table=11
NZ_PYKE01000077.1	RefSeq	gene	2200	3699	.	-	.	ID=gene-C9F05_RS05100;Name=C9F05_RS05100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05100;old_locus_tag=C9F05_05185
NZ_PYKE01000077.1	Protein Homology	CDS	2200	3699	.	-	0	ID=cds-WP_000475960.1;Parent=gene-C9F05_RS05100;Dbxref=GenBank:WP_000475960.1;Name=WP_000475960.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462041.1;locus_tag=C9F05_RS05100;product=APC family permease;protein_id=WP_000475960.1;transl_table=11
NZ_PYKE01000077.1	RefSeq	gene	3908	4282	.	-	.	ID=gene-C9F05_RS05105;Name=C9F05_RS05105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05105;old_locus_tag=C9F05_05190
NZ_PYKE01000077.1	Protein Homology	CDS	3908	4282	.	-	0	ID=cds-WP_000542982.1;Parent=gene-C9F05_RS05105;Dbxref=GenBank:WP_000542982.1;Name=WP_000542982.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462042.1;locus_tag=C9F05_RS05105;product=cupin domain-containing protein;protein_id=WP_000542982.1;transl_table=11
NZ_PYKE01000077.1	RefSeq	gene	4297	5598	.	-	.	ID=gene-C9F05_RS05110;Name=C9F05_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05110;old_locus_tag=C9F05_05195
NZ_PYKE01000077.1	Protein Homology	CDS	4297	5598	.	-	0	ID=cds-WP_001092814.1;Parent=gene-C9F05_RS05110;Dbxref=GenBank:WP_001092814.1;Name=WP_001092814.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462043.1;locus_tag=C9F05_RS05110;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_001092814.1;transl_table=11
NZ_PYKE01000077.1	RefSeq	gene	5760	7244	.	+	.	ID=gene-C9F05_RS05115;Name=C9F05_RS05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05115;old_locus_tag=C9F05_05200
NZ_PYKE01000077.1	Protein Homology	CDS	5760	7244	.	+	0	ID=cds-WP_080232032.1;Parent=gene-C9F05_RS05115;Dbxref=GenBank:WP_080232032.1;Name=WP_080232032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462044.1;locus_tag=C9F05_RS05115;product=NAD-dependent phenylacetaldehyde dehydrogenase;protein_id=WP_080232032.1;transl_table=11
NZ_PYKE01000077.1	RefSeq	gene	7376	7759	.	-	.	ID=gene-C9F05_RS05120;Name=iraD;gbkey=Gene;gene=iraD;gene_biotype=protein_coding;locus_tag=C9F05_RS05120;old_locus_tag=C9F05_05205
NZ_PYKE01000077.1	Protein Homology	CDS	7376	7759	.	-	0	ID=cds-WP_023202720.1;Parent=gene-C9F05_RS05120;Dbxref=GenBank:WP_023202720.1;Name=WP_023202720.1;gbkey=CDS;gene=iraD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001537588.1;locus_tag=C9F05_RS05120;product=anti-adapter protein IraD;protein_id=WP_023202720.1;transl_table=11
NZ_PYKE01000077.1	RefSeq	gene	7759	8244	.	-	.	ID=gene-C9F05_RS05125;Name=C9F05_RS05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05125;old_locus_tag=C9F05_05210
NZ_PYKE01000077.1	Protein Homology	CDS	7759	8244	.	-	0	ID=cds-WP_000338762.1;Parent=gene-C9F05_RS05125;Dbxref=GenBank:WP_000338762.1;Name=WP_000338762.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462046.1;locus_tag=C9F05_RS05125;product=Hcp family type VI secretion system effector;protein_id=WP_000338762.1;transl_table=11
##sequence-region NZ_PYKE01000229.1 1 8554
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000229.1	RefSeq	region	1	8554	.	+	.	ID=NZ_PYKE01000229.1:1..8554;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000229.1	RefSeq	pseudogene	1	298	.	+	.	ID=gene-C9F05_RS14930;Name=C9F05_RS14930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS14930;old_locus_tag=C9F05_15350;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000229.1	Protein Homology	CDS	1	298	.	+	1	ID=cds-C9F05_RS14930;Parent=gene-C9F05_RS14930;Note=similar to ElaD%3B specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins%3B SseL in Salmonella is required for macrophage killing and virulence%2C and it is secreted by the salmonella pathogenicity island 2 type III secretion system%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001017745.1;locus_tag=C9F05_RS14930;partial=true;product=type III secretion system effector deubiquitinase SseL;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000229.1	RefSeq	gene	532	708	.	-	.	ID=gene-C9F05_RS14935;Name=C9F05_RS14935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14935;old_locus_tag=C9F05_15360
NZ_PYKE01000229.1	Protein Homology	CDS	532	708	.	-	0	ID=cds-WP_001112764.1;Parent=gene-C9F05_RS14935;Dbxref=GenBank:WP_001112764.1;Name=WP_001112764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461230.1;locus_tag=C9F05_RS14935;product=hypothetical protein;protein_id=WP_001112764.1;transl_table=11
NZ_PYKE01000229.1	RefSeq	gene	714	1517	.	-	.	ID=gene-C9F05_RS14940;Name=yfaU;gbkey=Gene;gene=yfaU;gene_biotype=protein_coding;locus_tag=C9F05_RS14940;old_locus_tag=C9F05_15365
NZ_PYKE01000229.1	Protein Homology	CDS	714	1517	.	-	0	ID=cds-WP_135370424.1;Parent=gene-C9F05_RS14940;Dbxref=GenBank:WP_135370424.1;Name=WP_135370424.1;gbkey=CDS;gene=yfaU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461231.1;locus_tag=C9F05_RS14940;product=2-keto-3-deoxy-L-rhamnonate aldolase;protein_id=WP_135370424.1;transl_table=11
NZ_PYKE01000229.1	RefSeq	gene	1543	2832	.	-	.	ID=gene-C9F05_RS14945;Name=C9F05_RS14945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14945;old_locus_tag=C9F05_15370
NZ_PYKE01000229.1	Protein Homology	CDS	1543	2832	.	-	0	ID=cds-WP_000028931.1;Parent=gene-C9F05_RS14945;Dbxref=GenBank:WP_000028931.1;Name=WP_000028931.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461232.1;locus_tag=C9F05_RS14945;product=MFS transporter;protein_id=WP_000028931.1;transl_table=11
NZ_PYKE01000229.1	RefSeq	gene	2888	4093	.	-	.	ID=gene-C9F05_RS14950;Name=rhmD;gbkey=Gene;gene=rhmD;gene_biotype=protein_coding;locus_tag=C9F05_RS14950;old_locus_tag=C9F05_15375
NZ_PYKE01000229.1	Protein Homology	CDS	2888	4093	.	-	0	ID=cds-WP_001530644.1;Parent=gene-C9F05_RS14950;Dbxref=GenBank:WP_001530644.1;Name=WP_001530644.1;Ontology_term=GO:0050032;gbkey=CDS;gene=rhmD;go_function=L-rhamnonate dehydratase activity|0050032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416750.2;locus_tag=C9F05_RS14950;product=L-rhamnonate dehydratase;protein_id=WP_001530644.1;transl_table=11
NZ_PYKE01000229.1	RefSeq	gene	4107	4889	.	-	.	ID=gene-C9F05_RS14955;Name=C9F05_RS14955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14955;old_locus_tag=C9F05_15380
NZ_PYKE01000229.1	Protein Homology	CDS	4107	4889	.	-	0	ID=cds-WP_021000541.1;Parent=gene-C9F05_RS14955;Dbxref=GenBank:WP_021000541.1;Name=WP_021000541.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461234.1;locus_tag=C9F05_RS14955;product=IclR family transcriptional regulator;protein_id=WP_021000541.1;transl_table=11
NZ_PYKE01000229.1	RefSeq	gene	5139	6335	.	-	.	ID=gene-C9F05_RS14960;Name=C9F05_RS14960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14960;old_locus_tag=C9F05_15385
NZ_PYKE01000229.1	Protein Homology	CDS	5139	6335	.	-	0	ID=cds-WP_000935683.1;Parent=gene-C9F05_RS14960;Dbxref=GenBank:WP_000935683.1;Name=WP_000935683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461235.1;locus_tag=C9F05_RS14960;product=nicotinamide mononucleotide deamidase-related protein YfaY;protein_id=WP_000935683.1;transl_table=11
NZ_PYKE01000229.1	RefSeq	gene	6450	6992	.	-	.	ID=gene-C9F05_RS14965;Name=C9F05_RS14965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14965;old_locus_tag=C9F05_15390
NZ_PYKE01000229.1	Protein Homology	CDS	6450	6992	.	-	0	ID=cds-WP_001670658.1;Parent=gene-C9F05_RS14965;Dbxref=GenBank:WP_001670658.1;Name=WP_001670658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311165.2;locus_tag=C9F05_RS14965;product=YfaZ family protein;protein_id=WP_001670658.1;transl_table=11
NZ_PYKE01000229.1	RefSeq	gene	7271	7696	.	+	.	ID=gene-C9F05_RS14970;Name=nudI;gbkey=Gene;gene=nudI;gene_biotype=protein_coding;locus_tag=C9F05_RS14970;old_locus_tag=C9F05_15395
NZ_PYKE01000229.1	Protein Homology	CDS	7271	7696	.	+	0	ID=cds-WP_001249902.1;Parent=gene-C9F05_RS14970;Dbxref=GenBank:WP_001249902.1;Name=WP_001249902.1;Ontology_term=GO:0016818;gbkey=CDS;gene=nudI;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461237.1;locus_tag=C9F05_RS14970;product=nucleoside triphosphatase NudI;protein_id=WP_001249902.1;transl_table=11
NZ_PYKE01000229.1	RefSeq	gene	7741	8346	.	-	.	ID=gene-C9F05_RS14975;Name=pmrG;gbkey=Gene;gene=pmrG;gene_biotype=protein_coding;locus_tag=C9F05_RS14975;old_locus_tag=C9F05_15400
NZ_PYKE01000229.1	Protein Homology	CDS	7741	8346	.	-	0	ID=cds-WP_000879258.1;Parent=gene-C9F05_RS14975;Dbxref=GenBank:WP_000879258.1;Name=WP_000879258.1;gbkey=CDS;gene=pmrG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461238.1;locus_tag=C9F05_RS14975;product=lipopolysaccharide core heptose(II)-phosphate phosphatase PmrG;protein_id=WP_000879258.1;transl_table=11
##sequence-region NZ_PYKE01000293.1 1 38909
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000293.1	RefSeq	region	1	38909	.	+	.	ID=NZ_PYKE01000293.1:1..38909;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000293.1	RefSeq	gene	100	176	.	+	.	ID=gene-C9F05_RS19660;Name=C9F05_RS19660;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS19660;old_locus_tag=C9F05_20210
NZ_PYKE01000293.1	tRNAscan-SE	tRNA	100	176	.	+	.	ID=rna-C9F05_RS19660;Parent=gene-C9F05_RS19660;anticodon=(pos:134..136);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19660;product=tRNA-Asp
NZ_PYKE01000293.1	tRNAscan-SE	exon	100	176	.	+	.	ID=exon-C9F05_RS19660-1;Parent=rna-C9F05_RS19660;anticodon=(pos:134..136);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19660;product=tRNA-Asp
NZ_PYKE01000293.1	RefSeq	gene	185	260	.	+	.	ID=gene-C9F05_RS19665;Name=C9F05_RS19665;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS19665;old_locus_tag=C9F05_20215
NZ_PYKE01000293.1	tRNAscan-SE	tRNA	185	260	.	+	.	ID=rna-C9F05_RS19665;Parent=gene-C9F05_RS19665;anticodon=(pos:218..220);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19665;product=tRNA-Trp
NZ_PYKE01000293.1	tRNAscan-SE	exon	185	260	.	+	.	ID=exon-C9F05_RS19665-1;Parent=rna-C9F05_RS19665;anticodon=(pos:218..220);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19665;product=tRNA-Trp
NZ_PYKE01000293.1	RefSeq	gene	362	1210	.	-	.	ID=gene-C9F05_RS19670;Name=hdfR;gbkey=Gene;gene=hdfR;gene_biotype=protein_coding;locus_tag=C9F05_RS19670;old_locus_tag=C9F05_20220
NZ_PYKE01000293.1	Protein Homology	CDS	362	1210	.	-	0	ID=cds-WP_086008739.1;Parent=gene-C9F05_RS19670;Dbxref=GenBank:WP_086008739.1;Name=WP_086008739.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=hdfR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462788.3;locus_tag=C9F05_RS19670;product=HTH-type transcriptional regulator HdfR;protein_id=WP_086008739.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	1317	1655	.	+	.	ID=gene-C9F05_RS19675;Name=maoP;gbkey=Gene;gene=maoP;gene_biotype=protein_coding;locus_tag=C9F05_RS19675;old_locus_tag=C9F05_20225
NZ_PYKE01000293.1	Protein Homology	CDS	1317	1655	.	+	0	ID=cds-WP_000840996.1;Parent=gene-C9F05_RS19675;Dbxref=GenBank:WP_000840996.1;Name=WP_000840996.1;gbkey=CDS;gene=maoP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462789.1;locus_tag=C9F05_RS19675;product=macrodomain Ori organization protein MaoP;protein_id=WP_000840996.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	1680	3200	.	-	.	ID=gene-C9F05_RS19680;Name=C9F05_RS19680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19680;old_locus_tag=C9F05_20230
NZ_PYKE01000293.1	Protein Homology	CDS	1680	3200	.	-	0	ID=cds-WP_023994477.1;Parent=gene-C9F05_RS19680;Dbxref=GenBank:WP_023994477.1;Name=WP_023994477.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462790.1;locus_tag=C9F05_RS19680;product=YifB family Mg chelatase-like AAA ATPase;protein_id=WP_023994477.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	3552	3650	.	+	.	ID=gene-C9F05_RS19685;Name=ilvL;gbkey=Gene;gene=ilvL;gene_biotype=protein_coding;locus_tag=C9F05_RS19685;old_locus_tag=C9F05_20235
NZ_PYKE01000293.1	Protein Homology	CDS	3552	3650	.	+	0	ID=cds-WP_001311244.1;Parent=gene-C9F05_RS19685;Dbxref=GenBank:WP_001311244.1;Name=WP_001311244.1;Ontology_term=GO:0031556;gbkey=CDS;gene=ilvL;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312728.1;locus_tag=C9F05_RS19685;product=ilv operon leader peptide;protein_id=WP_001311244.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	3737	3787	.	+	.	ID=gene-C9F05_RS23710;Name=ilvX;gbkey=Gene;gene=ilvX;gene_biotype=protein_coding;locus_tag=C9F05_RS23710
NZ_PYKE01000293.1	Protein Homology	CDS	3737	3787	.	+	0	ID=cds-WP_192930503.1;Parent=gene-C9F05_RS23710;Dbxref=GenBank:WP_192930503.1;Name=WP_192930503.1;gbkey=CDS;gene=ilvX;inference=COORDINATES: protein motif:HMM:NF038286.1;locus_tag=C9F05_RS23710;product=peptide IlvX;protein_id=WP_192930503.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	3790	5436	.	+	.	ID=gene-C9F05_RS19690;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;locus_tag=C9F05_RS19690;old_locus_tag=C9F05_20240
NZ_PYKE01000293.1	Protein Homology	CDS	3790	5436	.	+	0	ID=cds-WP_135370566.1;Parent=gene-C9F05_RS19690;Dbxref=GenBank:WP_135370566.1;Name=WP_135370566.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvG;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001012636.1;locus_tag=C9F05_RS19690;product=acetolactate synthase 2 catalytic subunit;protein_id=WP_135370566.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	5433	5696	.	+	.	ID=gene-C9F05_RS19695;Name=ilvM;gbkey=Gene;gene=ilvM;gene_biotype=protein_coding;locus_tag=C9F05_RS19695;old_locus_tag=C9F05_20245
NZ_PYKE01000293.1	Protein Homology	CDS	5433	5696	.	+	0	ID=cds-WP_000983260.1;Parent=gene-C9F05_RS19695;Dbxref=GenBank:WP_000983260.1;Name=WP_000983260.1;gbkey=CDS;gene=ilvM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312730.1;locus_tag=C9F05_RS19695;product=acetolactate synthase 2 small subunit;protein_id=WP_000983260.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	5714	6643	.	+	.	ID=gene-C9F05_RS19700;Name=ilvE;gbkey=Gene;gene=ilvE;gene_biotype=protein_coding;locus_tag=C9F05_RS19700;old_locus_tag=C9F05_20250
NZ_PYKE01000293.1	Protein Homology	CDS	5714	6643	.	+	0	ID=cds-WP_000208532.1;Parent=gene-C9F05_RS19700;Dbxref=GenBank:WP_000208532.1;Name=WP_000208532.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;gene=ilvE;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462794.1;locus_tag=C9F05_RS19700;product=branched-chain-amino-acid transaminase;protein_id=WP_000208532.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	6803	8653	.	+	.	ID=gene-C9F05_RS19705;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=C9F05_RS19705;old_locus_tag=C9F05_20255
NZ_PYKE01000293.1	Protein Homology	CDS	6803	8653	.	+	0	ID=cds-WP_001127429.1;Parent=gene-C9F05_RS19705;Dbxref=GenBank:WP_001127429.1;Name=WP_001127429.1;Ontology_term=GO:0009082,GO:0004160;gbkey=CDS;gene=ilvD;go_function=dihydroxy-acid dehydratase activity|0004160||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133366.1;locus_tag=C9F05_RS19705;product=dihydroxy-acid dehydratase;protein_id=WP_001127429.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	8656	10200	.	+	.	ID=gene-C9F05_RS19710;Name=ilvA;gbkey=Gene;gene=ilvA;gene_biotype=protein_coding;locus_tag=C9F05_RS19710;old_locus_tag=C9F05_20260
NZ_PYKE01000293.1	Protein Homology	CDS	8656	10200	.	+	0	ID=cds-WP_001524959.1;Parent=gene-C9F05_RS19710;Dbxref=GenBank:WP_001524959.1;Name=WP_001524959.1;Ontology_term=GO:0009097,GO:0004794;gbkey=CDS;gene=ilvA;go_function=threonine deaminase activity|0004794||IEA;go_process=isoleucine biosynthetic process|0009097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462796.1;locus_tag=C9F05_RS19710;product=threonine ammonia-lyase%2C biosynthetic;protein_id=WP_001524959.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	10306	11007	.	+	.	ID=gene-C9F05_RS19715;Name=C9F05_RS19715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19715;old_locus_tag=C9F05_20265
NZ_PYKE01000293.1	Protein Homology	CDS	10306	11007	.	+	0	ID=cds-WP_001544634.1;Parent=gene-C9F05_RS19715;Dbxref=GenBank:WP_001544634.1;Name=WP_001544634.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004929969.1;locus_tag=C9F05_RS19715;product=DUF2461 domain-containing protein;protein_id=WP_001544634.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	11018	11392	.	-	.	ID=gene-C9F05_RS19720;Name=C9F05_RS19720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19720;old_locus_tag=C9F05_20270
NZ_PYKE01000293.1	Protein Homology	CDS	11018	11392	.	-	0	ID=cds-WP_000937045.1;Parent=gene-C9F05_RS19720;Dbxref=GenBank:WP_000937045.1;Name=WP_000937045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000937044.1;locus_tag=C9F05_RS19720;product=hypothetical protein;protein_id=WP_000937045.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	11406	11780	.	-	.	ID=gene-C9F05_RS19725;Name=C9F05_RS19725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19725;old_locus_tag=C9F05_20275
NZ_PYKE01000293.1	Protein Homology	CDS	11406	11780	.	-	0	ID=cds-WP_001609034.1;Parent=gene-C9F05_RS19725;Dbxref=GenBank:WP_001609034.1;Name=WP_001609034.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001554297.1;locus_tag=C9F05_RS19725;product=hypothetical protein;protein_id=WP_001609034.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	11808	12695	.	-	.	ID=gene-C9F05_RS19730;Name=ilvY;gbkey=Gene;gene=ilvY;gene_biotype=protein_coding;locus_tag=C9F05_RS19730;old_locus_tag=C9F05_20280
NZ_PYKE01000293.1	Protein Homology	CDS	11808	12695	.	-	0	ID=cds-WP_135370567.1;Parent=gene-C9F05_RS19730;Dbxref=GenBank:WP_135370567.1;Name=WP_135370567.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ilvY;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001530887.1;locus_tag=C9F05_RS19730;product=HTH-type transcriptional activator IlvY;protein_id=WP_135370567.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	12849	14324	.	+	.	ID=gene-C9F05_RS19735;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=C9F05_RS19735;old_locus_tag=C9F05_20285
NZ_PYKE01000293.1	Protein Homology	CDS	12849	14324	.	+	0	ID=cds-WP_000024943.1;Parent=gene-C9F05_RS19735;Dbxref=GenBank:WP_000024943.1;Name=WP_000024943.1;Ontology_term=GO:0009082,GO:0004455;gbkey=CDS;gene=ilvC;go_function=ketol-acid reductoisomerase activity|0004455||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133363.1;locus_tag=C9F05_RS19735;product=ketol-acid reductoisomerase;protein_id=WP_000024943.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	14416	14697	.	-	.	ID=gene-C9F05_RS19740;Name=ppiC;gbkey=Gene;gene=ppiC;gene_biotype=protein_coding;locus_tag=C9F05_RS19740;old_locus_tag=C9F05_20290
NZ_PYKE01000293.1	Protein Homology	CDS	14416	14697	.	-	0	ID=cds-WP_001096806.1;Parent=gene-C9F05_RS19740;Dbxref=GenBank:WP_001096806.1;Name=WP_001096806.1;gbkey=CDS;gene=ppiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462801.1;locus_tag=C9F05_RS19740;product=peptidylprolyl isomerase PpiC;protein_id=WP_001096806.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	14891	15592	.	+	.	ID=gene-C9F05_RS19745;Name=C9F05_RS19745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19745;old_locus_tag=C9F05_20295
NZ_PYKE01000293.1	Protein Homology	CDS	14891	15592	.	+	0	ID=cds-WP_001024340.1;Parent=gene-C9F05_RS19745;Dbxref=GenBank:WP_001024340.1;Name=WP_001024340.1;Ontology_term=GO:0003677,GO:0030552;gbkey=CDS;go_function=DNA binding|0003677||IEA,cAMP binding|0030552||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442089.1;locus_tag=C9F05_RS19745;product=Crp/Fnr family transcriptional regulator;protein_id=WP_001024340.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	15621	16364	.	+	.	ID=gene-C9F05_RS19750;Name=C9F05_RS19750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19750;old_locus_tag=C9F05_20300
NZ_PYKE01000293.1	Protein Homology	CDS	15621	16364	.	+	0	ID=cds-WP_001182428.1;Parent=gene-C9F05_RS19750;Dbxref=GenBank:WP_001182428.1;Name=WP_001182428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001182423.1;locus_tag=C9F05_RS19750;product=nucleoside phosphorylase;protein_id=WP_001182428.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	16364	17092	.	+	.	ID=gene-C9F05_RS19755;Name=pnuC;gbkey=Gene;gene=pnuC;gene_biotype=protein_coding;locus_tag=C9F05_RS19755;old_locus_tag=C9F05_20305
NZ_PYKE01000293.1	Protein Homology	CDS	16364	17092	.	+	0	ID=cds-WP_135370570.1;Parent=gene-C9F05_RS19755;Dbxref=GenBank:WP_135370570.1;Name=WP_135370570.1;Ontology_term=GO:0015890,GO:0015663,GO:0016020;gbkey=CDS;gene=pnuC;go_component=membrane|0016020||IEA;go_function=nicotinamide mononucleotide transmembrane transporter activity|0015663||IEA;go_process=nicotinamide mononucleotide transport|0015890||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506088.1;locus_tag=C9F05_RS19755;product=nicotinamide riboside transporter PnuC;protein_id=WP_135370570.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	17192	19216	.	+	.	ID=gene-C9F05_RS19760;Name=rep;gbkey=Gene;gene=rep;gene_biotype=protein_coding;locus_tag=C9F05_RS19760;old_locus_tag=C9F05_20310
NZ_PYKE01000293.1	Protein Homology	CDS	17192	19216	.	+	0	ID=cds-WP_001238842.1;Parent=gene-C9F05_RS19760;Dbxref=GenBank:WP_001238842.1;Name=WP_001238842.1;Ontology_term=GO:0006260,GO:0003678;gbkey=CDS;gene=rep;go_function=DNA helicase activity|0003678||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462803.1;locus_tag=C9F05_RS19760;product=DNA helicase Rep;protein_id=WP_001238842.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	19256	20737	.	-	.	ID=gene-C9F05_RS19765;Name=gppA;gbkey=Gene;gene=gppA;gene_biotype=protein_coding;locus_tag=C9F05_RS19765;old_locus_tag=C9F05_20315
NZ_PYKE01000293.1	Protein Homology	CDS	19256	20737	.	-	0	ID=cds-WP_001089447.1;Parent=gene-C9F05_RS19765;Dbxref=GenBank:WP_001089447.1;Name=WP_001089447.1;Ontology_term=GO:0015974,GO:0008894;gbkey=CDS;gene=gppA;go_function=guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase activity|0008894||IEA;go_process=guanosine pentaphosphate catabolic process|0015974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462804.1;locus_tag=C9F05_RS19765;product=guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase;protein_id=WP_001089447.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	20856	22121	.	-	.	ID=gene-C9F05_RS19770;Name=rhlB;gbkey=Gene;gene=rhlB;gene_biotype=protein_coding;locus_tag=C9F05_RS19770;old_locus_tag=C9F05_20325
NZ_PYKE01000293.1	Protein Homology	CDS	20856	22121	.	-	0	ID=cds-WP_000047525.1;Parent=gene-C9F05_RS19770;Dbxref=GenBank:WP_000047525.1;Name=WP_000047525.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=rhlB;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462805.1;locus_tag=C9F05_RS19770;product=ATP-dependent RNA helicase RhlB;protein_id=WP_000047525.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	22265	22594	.	+	.	ID=gene-C9F05_RS19775;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=C9F05_RS19775;old_locus_tag=C9F05_20330
NZ_PYKE01000293.1	Protein Homology	CDS	22265	22594	.	+	0	ID=cds-WP_001280776.1;Parent=gene-C9F05_RS19775;Dbxref=GenBank:WP_001280776.1;Name=WP_001280776.1;Ontology_term=GO:0015035;gbkey=CDS;gene=trxA;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017375425.1;locus_tag=C9F05_RS19775;product=thioredoxin TrxA;protein_id=WP_001280776.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	22842	22925	.	+	.	ID=gene-C9F05_RS23905;Name=C9F05_RS23905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23905
NZ_PYKE01000293.1	Protein Homology	CDS	22842	22925	.	+	0	ID=cds-WP_134820045.1;Parent=gene-C9F05_RS23905;Dbxref=GenBank:WP_134820045.1;Name=WP_134820045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312742.1;locus_tag=C9F05_RS23905;product=rho operon leader peptide;protein_id=WP_134820045.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	23013	24272	.	+	.	ID=gene-C9F05_RS19785;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=C9F05_RS19785;old_locus_tag=C9F05_20340
NZ_PYKE01000293.1	Protein Homology	CDS	23013	24272	.	+	0	ID=cds-WP_001054532.1;Parent=gene-C9F05_RS19785;Dbxref=GenBank:WP_001054532.1;Name=WP_001054532.1;Ontology_term=GO:0006353,GO:0003723,GO:0005524,GO:0008186;gbkey=CDS;gene=rho;go_function=RNA binding|0003723||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on RNA|0008186||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1;locus_tag=C9F05_RS19785;product=transcription termination factor Rho;protein_id=WP_001054532.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	24502	25605	.	+	.	ID=gene-C9F05_RS19790;Name=wecA;gbkey=Gene;gene=wecA;gene_biotype=protein_coding;locus_tag=C9F05_RS19790;old_locus_tag=C9F05_20345
NZ_PYKE01000293.1	Protein Homology	CDS	24502	25605	.	+	0	ID=cds-WP_000771937.1;Parent=gene-C9F05_RS19790;Dbxref=GenBank:WP_000771937.1;Name=WP_000771937.1;Ontology_term=GO:0009103,GO:0009246,GO:0000287,GO:0016780,GO:0030145,GO:0036380,GO:0009276,GO:0016020;gbkey=CDS;gene=wecA;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,membrane|0016020||IEA;go_function=magnesium ion binding|0000287||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA,manganese ion binding|0030145||IEA,UDP-N-acetylglucosamine-undecaprenyl-phosphate N-acetylglucosaminephosphotransferase activity|0036380||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462808.1;locus_tag=C9F05_RS19790;product=UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase;protein_id=WP_000771937.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	25617	26663	.	+	.	ID=gene-C9F05_RS19795;Name=wzzE;gbkey=Gene;gene=wzzE;gene_biotype=protein_coding;locus_tag=C9F05_RS19795;old_locus_tag=C9F05_20350
NZ_PYKE01000293.1	Protein Homology	CDS	25617	26663	.	+	0	ID=cds-WP_000193413.1;Parent=gene-C9F05_RS19795;Dbxref=GenBank:WP_000193413.1;Name=WP_000193413.1;Ontology_term=GO:0009103,GO:0009246,GO:0016020;gbkey=CDS;gene=wzzE;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462809.1;locus_tag=C9F05_RS19795;product=ECA polysaccharide chain length modulation protein;protein_id=WP_000193413.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	26719	27849	.	+	.	ID=gene-C9F05_RS19800;Name=wecB;gbkey=Gene;gene=wecB;gene_biotype=protein_coding;locus_tag=C9F05_RS19800;old_locus_tag=C9F05_20355
NZ_PYKE01000293.1	Protein Homology	CDS	26719	27849	.	+	0	ID=cds-WP_000866685.1;Parent=gene-C9F05_RS19800;Dbxref=GenBank:WP_000866685.1;Name=WP_000866685.1;Ontology_term=GO:0008761;gbkey=CDS;gene=wecB;go_function=UDP-N-acetylglucosamine 2-epimerase activity|0008761||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462810.1;locus_tag=C9F05_RS19800;product=non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_000866685.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	27846	29108	.	+	.	ID=gene-C9F05_RS19805;Name=wecC;gbkey=Gene;gene=wecC;gene_biotype=protein_coding;locus_tag=C9F05_RS19805;old_locus_tag=C9F05_20360
NZ_PYKE01000293.1	Protein Homology	CDS	27846	29108	.	+	0	ID=cds-WP_135370568.1;Parent=gene-C9F05_RS19805;Dbxref=GenBank:WP_135370568.1;Name=WP_135370568.1;Ontology_term=GO:0009246,GO:0051287,GO:0089714;gbkey=CDS;gene=wecC;go_function=NAD binding|0051287||IEA,UDP-N-acetyl-D-mannosamine dehydrogenase activity|0089714||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462811.1;locus_tag=C9F05_RS19805;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_135370568.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	29108	30175	.	+	.	ID=gene-C9F05_RS19810;Name=rffG;gbkey=Gene;gene=rffG;gene_biotype=protein_coding;locus_tag=C9F05_RS19810;old_locus_tag=C9F05_20365
NZ_PYKE01000293.1	Protein Homology	CDS	29108	30175	.	+	0	ID=cds-WP_000822143.1;Parent=gene-C9F05_RS19810;Dbxref=GenBank:WP_000822143.1;Name=WP_000822143.1;Ontology_term=GO:0009225,GO:0008460;gbkey=CDS;gene=rffG;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462812.1;locus_tag=C9F05_RS19810;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_000822143.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	30118	30432	.	+	.	ID=gene-C9F05_RS19815;Name=C9F05_RS19815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19815;old_locus_tag=C9F05_20370
NZ_PYKE01000293.1	Protein Homology	CDS	30118	30432	.	+	0	ID=cds-WP_223149427.1;Parent=gene-C9F05_RS19815;Dbxref=GenBank:WP_223149427.1;Name=WP_223149427.1;Ontology_term=GO:0009058,GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133346.1;locus_tag=C9F05_RS19815;product=sugar phosphate nucleotidyltransferase;protein_id=WP_223149427.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	30410	31087	.	+	.	ID=gene-C9F05_RS19820;Name=rffC;gbkey=Gene;gene=rffC;gene_biotype=protein_coding;gene_synonym=wecD;locus_tag=C9F05_RS19820;old_locus_tag=C9F05_20375
NZ_PYKE01000293.1	Protein Homology	CDS	30410	31087	.	+	0	ID=cds-WP_001145156.1;Parent=gene-C9F05_RS19820;Dbxref=GenBank:WP_001145156.1;Name=WP_001145156.1;Ontology_term=GO:0008080;gbkey=CDS;gene=rffC;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026256.2;locus_tag=C9F05_RS19820;product=dTDP-4-amino-4%2C6-dideoxy-D-galactose acyltransferase;protein_id=WP_001145156.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	31092	32222	.	+	.	ID=gene-C9F05_RS19825;Name=rffA;gbkey=Gene;gene=rffA;gene_biotype=protein_coding;gene_synonym=fcnA,wecE;locus_tag=C9F05_RS19825;old_locus_tag=C9F05_20380
NZ_PYKE01000293.1	Protein Homology	CDS	31092	32222	.	+	0	ID=cds-WP_000612080.1;Parent=gene-C9F05_RS19825;Dbxref=GenBank:WP_000612080.1;Name=WP_000612080.1;Ontology_term=GO:0009246,GO:0019180;gbkey=CDS;gene=rffA;go_function=dTDP-4-amino-4%2C6-dideoxygalactose transaminase activity|0019180||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462815.1;locus_tag=C9F05_RS19825;product=dTDP-4-amino-4%2C6-dideoxygalactose transaminase;protein_id=WP_000612080.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	32224	33474	.	+	.	ID=gene-C9F05_RS19830;Name=wzxE;gbkey=Gene;gene=wzxE;gene_biotype=protein_coding;locus_tag=C9F05_RS19830;old_locus_tag=C9F05_20385
NZ_PYKE01000293.1	Protein Homology	CDS	32224	33474	.	+	0	ID=cds-WP_000050288.1;Parent=gene-C9F05_RS19830;Dbxref=GenBank:WP_000050288.1;Name=WP_000050288.1;Ontology_term=GO:0009246,GO:0016020;gbkey=CDS;gene=wzxE;go_component=membrane|0016020||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462816.1;locus_tag=C9F05_RS19830;product=lipid III flippase WzxE;protein_id=WP_000050288.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	33471	34550	.	+	.	ID=gene-C9F05_RS19835;Name=C9F05_RS19835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19835;old_locus_tag=C9F05_20390
NZ_PYKE01000293.1	Protein Homology	CDS	33471	34550	.	+	0	ID=cds-WP_135370569.1;Parent=gene-C9F05_RS19835;Dbxref=GenBank:WP_135370569.1;Name=WP_135370569.1;Ontology_term=GO:0036065,GO:0008417;gbkey=CDS;go_function=fucosyltransferase activity|0008417||IEA;go_process=fucosylation|0036065||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462817.1;locus_tag=C9F05_RS19835;product=TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase;protein_id=WP_135370569.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	34547	35905	.	+	.	ID=gene-C9F05_RS19840;Name=wzyE;gbkey=Gene;gene=wzyE;gene_biotype=protein_coding;locus_tag=C9F05_RS19840;old_locus_tag=C9F05_20395
NZ_PYKE01000293.1	Protein Homology	CDS	34547	35905	.	+	0	ID=cds-WP_000055605.1;Parent=gene-C9F05_RS19840;Dbxref=GenBank:WP_000055605.1;Name=WP_000055605.1;Ontology_term=GO:0009246,GO:0016020;gbkey=CDS;gene=wzyE;go_component=membrane|0016020||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462818.1;locus_tag=C9F05_RS19840;product=ECA oligosaccharide polymerase;protein_id=WP_000055605.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	35902	36642	.	+	.	ID=gene-C9F05_RS19845;Name=wecG;gbkey=Gene;gene=wecG;gene_biotype=protein_coding;locus_tag=C9F05_RS19845;old_locus_tag=C9F05_20400
NZ_PYKE01000293.1	Protein Homology	CDS	35902	36642	.	+	0	ID=cds-WP_000183621.1;Parent=gene-C9F05_RS19845;Dbxref=GenBank:WP_000183621.1;Name=WP_000183621.1;Ontology_term=GO:0047241;gbkey=CDS;gene=wecG;go_function=lipopolysaccharide N-acetylmannosaminouronosyltransferase activity|0047241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462819.1;locus_tag=C9F05_RS19845;product=lipopolysaccharide N-acetylmannosaminouronosyltransferase;protein_id=WP_000183621.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	36849	38234	.	+	.	ID=gene-C9F05_RS19850;Name=thrP;gbkey=Gene;gene=thrP;gene_biotype=protein_coding;gene_synonym=yifK;locus_tag=C9F05_RS19850;old_locus_tag=C9F05_20405
NZ_PYKE01000293.1	Protein Homology	CDS	36849	38234	.	+	0	ID=cds-WP_000818378.1;Parent=gene-C9F05_RS19850;Dbxref=GenBank:WP_000818378.1;Name=WP_000818378.1;Ontology_term=GO:0015194,GO:0015195;gbkey=CDS;gene=thrP;go_function=L-serine transmembrane transporter activity|0015194||IEA,L-threonine transmembrane transporter activity|0015195||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462820.1;locus_tag=C9F05_RS19850;product=bifunctional threonine/serine APC transporter ThrP;protein_id=WP_000818378.1;transl_table=11
NZ_PYKE01000293.1	RefSeq	gene	38337	38413	.	+	.	ID=gene-C9F05_RS19855;Name=C9F05_RS19855;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS19855;old_locus_tag=C9F05_20410
NZ_PYKE01000293.1	tRNAscan-SE	tRNA	38337	38413	.	+	.	ID=rna-C9F05_RS19855;Parent=gene-C9F05_RS19855;anticodon=(pos:38371..38373);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19855;product=tRNA-Arg
NZ_PYKE01000293.1	tRNAscan-SE	exon	38337	38413	.	+	.	ID=exon-C9F05_RS19855-1;Parent=rna-C9F05_RS19855;anticodon=(pos:38371..38373);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19855;product=tRNA-Arg
NZ_PYKE01000293.1	RefSeq	gene	38468	38543	.	+	.	ID=gene-C9F05_RS19860;Name=C9F05_RS19860;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS19860;old_locus_tag=C9F05_20415
NZ_PYKE01000293.1	tRNAscan-SE	tRNA	38468	38543	.	+	.	ID=rna-C9F05_RS19860;Parent=gene-C9F05_RS19860;anticodon=(pos:38501..38503);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19860;product=tRNA-His
NZ_PYKE01000293.1	tRNAscan-SE	exon	38468	38543	.	+	.	ID=exon-C9F05_RS19860-1;Parent=rna-C9F05_RS19860;anticodon=(pos:38501..38503);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19860;product=tRNA-His
NZ_PYKE01000293.1	RefSeq	gene	38564	38650	.	+	.	ID=gene-C9F05_RS19865;Name=C9F05_RS19865;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS19865;old_locus_tag=C9F05_20420
NZ_PYKE01000293.1	tRNAscan-SE	tRNA	38564	38650	.	+	.	ID=rna-C9F05_RS19865;Parent=gene-C9F05_RS19865;anticodon=(pos:38598..38600);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19865;product=tRNA-Leu
NZ_PYKE01000293.1	tRNAscan-SE	exon	38564	38650	.	+	.	ID=exon-C9F05_RS19865-1;Parent=rna-C9F05_RS19865;anticodon=(pos:38598..38600);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19865;product=tRNA-Leu
NZ_PYKE01000293.1	RefSeq	gene	38693	38769	.	+	.	ID=gene-C9F05_RS19870;Name=C9F05_RS19870;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS19870;old_locus_tag=C9F05_20425
NZ_PYKE01000293.1	tRNAscan-SE	tRNA	38693	38769	.	+	.	ID=rna-C9F05_RS19870;Parent=gene-C9F05_RS19870;anticodon=(pos:38727..38729);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19870;product=tRNA-Pro
NZ_PYKE01000293.1	tRNAscan-SE	exon	38693	38769	.	+	.	ID=exon-C9F05_RS19870-1;Parent=rna-C9F05_RS19870;anticodon=(pos:38727..38729);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS19870;product=tRNA-Pro
##sequence-region NZ_PYKE01000337.1 1 8351
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000337.1	RefSeq	region	1	8351	.	+	.	ID=NZ_PYKE01000337.1:1..8351;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000337.1	RefSeq	gene	216	1793	.	-	.	ID=gene-C9F05_RS22670;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=C9F05_RS22670;old_locus_tag=C9F05_23265
NZ_PYKE01000337.1	Protein Homology	CDS	216	1793	.	-	0	ID=cds-WP_000138293.1;Parent=gene-C9F05_RS22670;Dbxref=GenBank:WP_000138293.1;Name=WP_000138293.1;Ontology_term=GO:0006177,GO:0003922,GO:0005524,GO:0016462;gbkey=CDS;gene=guaA;go_function=GMP synthase (glutamine-hydrolyzing) activity|0003922||IEA,ATP binding|0005524||IEA,pyrophosphatase activity|0016462||IEA;go_process=GMP biosynthetic process|0006177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130181.1;locus_tag=C9F05_RS22670;product=glutamine-hydrolyzing GMP synthase;protein_id=WP_000138293.1;transl_table=11
NZ_PYKE01000337.1	RefSeq	gene	1863	3329	.	-	.	ID=gene-C9F05_RS22675;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=C9F05_RS22675;old_locus_tag=C9F05_23270
NZ_PYKE01000337.1	Protein Homology	CDS	1863	3329	.	-	0	ID=cds-WP_000944174.1;Parent=gene-C9F05_RS22675;Dbxref=GenBank:WP_000944174.1;Name=WP_000944174.1;Ontology_term=GO:0006164,GO:0003938;gbkey=CDS;gene=guaB;go_function=IMP dehydrogenase activity|0003938||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004151980.1;locus_tag=C9F05_RS22675;product=IMP dehydrogenase;protein_id=WP_000944174.1;transl_table=11
NZ_PYKE01000337.1	RefSeq	gene	3490	4839	.	+	.	ID=gene-C9F05_RS22680;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=C9F05_RS22680;old_locus_tag=C9F05_23275
NZ_PYKE01000337.1	Protein Homology	CDS	3490	4839	.	+	0	ID=cds-WP_000953167.1;Parent=gene-C9F05_RS22680;Dbxref=GenBank:WP_000953167.1;Name=WP_000953167.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461447.1;locus_tag=C9F05_RS22680;product=exodeoxyribonuclease VII large subunit;protein_id=WP_000953167.1;transl_table=11
NZ_PYKE01000337.1	RefSeq	gene	5001	8351	.	-	.	ID=gene-C9F05_RS22685;Name=shdA;end_range=8351,.;gbkey=Gene;gene=shdA;gene_biotype=protein_coding;locus_tag=C9F05_RS22685;old_locus_tag=C9F05_23280;partial=true
NZ_PYKE01000337.1	Protein Homology	CDS	5001	8351	.	-	0	ID=cds-WP_135370661.1;Parent=gene-C9F05_RS22685;Dbxref=GenBank:WP_135370661.1;Name=WP_135370661.1;Ontology_term=GO:0019867;end_range=8351,.;gbkey=CDS;gene=shdA;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835061.1;locus_tag=C9F05_RS22685;partial=true;product=fibronectin-binding autotransporter adhesin ShdA;protein_id=WP_135370661.1;transl_table=11
##sequence-region NZ_PYKE01000206.1 1 8302
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000206.1	RefSeq	region	1	8302	.	+	.	ID=NZ_PYKE01000206.1:1..8302;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000206.1	RefSeq	gene	1	107	.	-	.	ID=gene-C9F05_RS24170;Name=C9F05_RS24170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24170;partial=true;start_range=.,1
NZ_PYKE01000206.1	Protein Homology	CDS	1	107	.	-	0	ID=cds-WP_441007332.1;Parent=gene-C9F05_RS24170;Dbxref=GenBank:WP_441007332.1;Name=WP_441007332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462417.1;locus_tag=C9F05_RS24170;partial=true;product=hypothetical protein;protein_id=WP_441007332.1;start_range=.,1;transl_table=11
NZ_PYKE01000206.1	RefSeq	gene	702	3407	.	+	.	ID=gene-C9F05_RS13380;Name=malT;gbkey=Gene;gene=malT;gene_biotype=protein_coding;locus_tag=C9F05_RS13380;old_locus_tag=C9F05_13765
NZ_PYKE01000206.1	Protein Homology	CDS	702	3407	.	+	0	ID=cds-WP_000907030.1;Parent=gene-C9F05_RS13380;Dbxref=GenBank:WP_000907030.1;Name=WP_000907030.1;Ontology_term=GO:0006355,GO:0003677,GO:0005515;gbkey=CDS;gene=malT;go_function=DNA binding|0003677||IEA,protein binding|0005515||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000907024.1;locus_tag=C9F05_RS13380;product=HTH-type transcriptional regulator MalT;protein_id=WP_000907030.1;transl_table=11
NZ_PYKE01000206.1	RefSeq	gene	3549	4109	.	-	.	ID=gene-C9F05_RS13385;Name=C9F05_RS13385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13385;old_locus_tag=C9F05_13770
NZ_PYKE01000206.1	Protein Homology	CDS	3549	4109	.	-	0	ID=cds-WP_023254574.1;Parent=gene-C9F05_RS13385;Dbxref=GenBank:WP_023254574.1;Name=WP_023254574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001650910.1;locus_tag=C9F05_RS13385;product=hypothetical protein;protein_id=WP_023254574.1;transl_table=11
NZ_PYKE01000206.1	RefSeq	gene	4106	5140	.	-	.	ID=gene-C9F05_RS13390;Name=rtcA;gbkey=Gene;gene=rtcA;gene_biotype=protein_coding;locus_tag=C9F05_RS13390;old_locus_tag=C9F05_13775
NZ_PYKE01000206.1	Protein Homology	CDS	4106	5140	.	-	0	ID=cds-WP_135370358.1;Parent=gene-C9F05_RS13390;Dbxref=GenBank:WP_135370358.1;Name=WP_135370358.1;Ontology_term=GO:0006396,GO:0003963;gbkey=CDS;gene=rtcA;go_function=RNA-3'-phosphate cyclase activity|0003963||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000101029.1;locus_tag=C9F05_RS13390;product=RNA 3'-terminal phosphate cyclase;protein_id=WP_135370358.1;transl_table=11
NZ_PYKE01000206.1	RefSeq	gene	5144	6358	.	-	.	ID=gene-C9F05_RS13395;Name=rtcB;gbkey=Gene;gene=rtcB;gene_biotype=protein_coding;locus_tag=C9F05_RS13395;old_locus_tag=C9F05_13780
NZ_PYKE01000206.1	Protein Homology	CDS	5144	6358	.	-	0	ID=cds-WP_001105531.1;Parent=gene-C9F05_RS13395;Dbxref=GenBank:WP_001105531.1;Name=WP_001105531.1;gbkey=CDS;gene=rtcB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417879.1;locus_tag=C9F05_RS13395;product=RNA-splicing ligase RtcB;protein_id=WP_001105531.1;transl_table=11
NZ_PYKE01000206.1	RefSeq	gene	6706	8259	.	-	.	ID=gene-C9F05_RS13400;Name=C9F05_RS13400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13400;old_locus_tag=C9F05_13785
NZ_PYKE01000206.1	Protein Homology	CDS	6706	8259	.	-	0	ID=cds-WP_135370359.1;Parent=gene-C9F05_RS13400;Dbxref=GenBank:WP_135370359.1;Name=WP_135370359.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462423.1;locus_tag=C9F05_RS13400;product=vWA domain-containing protein;protein_id=WP_135370359.1;transl_table=11
##sequence-region NZ_PYKE01000123.1 1 8295
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000123.1	RefSeq	region	1	8295	.	+	.	ID=NZ_PYKE01000123.1:1..8295;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000123.1	RefSeq	gene	248	1798	.	-	.	ID=gene-C9F05_RS08935;Name=C9F05_RS08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08935;old_locus_tag=C9F05_09165
NZ_PYKE01000123.1	Protein Homology	CDS	248	1798	.	-	0	ID=cds-WP_063809265.1;Parent=gene-C9F05_RS08935;Dbxref=GenBank:WP_063809265.1;Name=WP_063809265.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460596.1;locus_tag=C9F05_RS08935;product=glycosyltransferase family 39 protein;protein_id=WP_063809265.1;transl_table=11
NZ_PYKE01000123.1	RefSeq	gene	1935	2615	.	-	.	ID=gene-C9F05_RS08940;Name=C9F05_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08940;old_locus_tag=C9F05_09170
NZ_PYKE01000123.1	Protein Homology	CDS	1935	2615	.	-	0	ID=cds-WP_000560165.1;Parent=gene-C9F05_RS08940;Dbxref=GenBank:WP_000560165.1;Name=WP_000560165.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460595.1;locus_tag=C9F05_RS08940;product=amino acid ABC transporter permease;protein_id=WP_000560165.1;transl_table=11
NZ_PYKE01000123.1	RefSeq	gene	2612	3343	.	-	.	ID=gene-C9F05_RS08945;Name=C9F05_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08945;old_locus_tag=C9F05_09175
NZ_PYKE01000123.1	Protein Homology	CDS	2612	3343	.	-	0	ID=cds-WP_135370189.1;Parent=gene-C9F05_RS08945;Dbxref=GenBank:WP_135370189.1;Name=WP_135370189.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460594.1;locus_tag=C9F05_RS08945;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_135370189.1;transl_table=11
NZ_PYKE01000123.1	RefSeq	gene	3368	4015	.	-	.	ID=gene-C9F05_RS08950;Name=C9F05_RS08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08950;old_locus_tag=C9F05_09180
NZ_PYKE01000123.1	Protein Homology	CDS	3368	4015	.	-	0	ID=cds-WP_023242332.1;Parent=gene-C9F05_RS08950;Dbxref=GenBank:WP_023242332.1;Name=WP_023242332.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460593.1;locus_tag=C9F05_RS08950;product=amino acid ABC transporter permease;protein_id=WP_023242332.1;transl_table=11
NZ_PYKE01000123.1	RefSeq	gene	4022	4783	.	-	.	ID=gene-C9F05_RS08955;Name=C9F05_RS08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08955;old_locus_tag=C9F05_09185
NZ_PYKE01000123.1	Protein Homology	CDS	4022	4783	.	-	0	ID=cds-WP_000949383.1;Parent=gene-C9F05_RS08955;Dbxref=GenBank:WP_000949383.1;Name=WP_000949383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460592.1;locus_tag=C9F05_RS08955;product=transporter substrate-binding domain-containing protein;protein_id=WP_000949383.1;transl_table=11
NZ_PYKE01000123.1	RefSeq	gene	5690	6034	.	+	.	ID=gene-C9F05_RS08960;Name=C9F05_RS08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08960;old_locus_tag=C9F05_09190
NZ_PYKE01000123.1	Protein Homology	CDS	5690	6034	.	+	0	ID=cds-WP_080222697.1;Parent=gene-C9F05_RS08960;Dbxref=GenBank:WP_080222697.1;Name=WP_080222697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460591.1;locus_tag=C9F05_RS08960;product=DUF1294 domain-containing protein;protein_id=WP_080222697.1;transl_table=11
NZ_PYKE01000123.1	RefSeq	gene	6155	7381	.	-	.	ID=gene-C9F05_RS08965;Name=sseJ;gbkey=Gene;gene=sseJ;gene_biotype=protein_coding;locus_tag=C9F05_RS08965;old_locus_tag=C9F05_09195
NZ_PYKE01000123.1	Protein Homology	CDS	6155	7381	.	-	0	ID=cds-WP_135370190.1;Parent=gene-C9F05_RS08965;Dbxref=GenBank:WP_135370190.1;Name=WP_135370190.1;gbkey=CDS;gene=sseJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460590.1;locus_tag=C9F05_RS08965;product=SPI-2 type III secretion system effector SseJ;protein_id=WP_135370190.1;transl_table=11
NZ_PYKE01000123.1	RefSeq	gene	7808	8295	.	+	.	ID=gene-C9F05_RS08970;Name=C9F05_RS08970;end_range=8295,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08970;old_locus_tag=C9F05_09200;partial=true
NZ_PYKE01000123.1	Protein Homology	CDS	7808	8295	.	+	0	ID=cds-WP_135370191.1;Parent=gene-C9F05_RS08970;Dbxref=GenBank:WP_135370191.1;Name=WP_135370191.1;end_range=8295,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460589.1;locus_tag=C9F05_RS08970;partial=true;product=hypothetical protein;protein_id=WP_135370191.1;transl_table=11
##sequence-region NZ_PYKE01000272.1 1 8225
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000272.1	RefSeq	region	1	8225	.	+	.	ID=NZ_PYKE01000272.1:1..8225;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000272.1	RefSeq	gene	364	1554	.	-	.	ID=gene-C9F05_RS18115;Name=glpC;gbkey=Gene;gene=glpC;gene_biotype=protein_coding;locus_tag=C9F05_RS18115;old_locus_tag=C9F05_18640
NZ_PYKE01000272.1	Protein Homology	CDS	364	1554	.	-	0	ID=cds-WP_001285726.1;Parent=gene-C9F05_RS18115;Dbxref=GenBank:WP_001285726.1;Name=WP_001285726.1;Ontology_term=GO:0006071,GO:0009061,GO:0004368,GO:0051536,GO:0009331,GO:0016020;gbkey=CDS;gene=glpC;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA,membrane|0016020||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=glycerol metabolic process|0006071||IEA,anaerobic respiration|0009061||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461228.1;locus_tag=C9F05_RS18115;product=anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC;protein_id=WP_001285726.1;transl_table=11
NZ_PYKE01000272.1	RefSeq	gene	1551	2810	.	-	.	ID=gene-C9F05_RS18120;Name=glpB;gbkey=Gene;gene=glpB;gene_biotype=protein_coding;locus_tag=C9F05_RS18120;old_locus_tag=C9F05_18645
NZ_PYKE01000272.1	Protein Homology	CDS	1551	2810	.	-	0	ID=cds-WP_000667152.1;Parent=gene-C9F05_RS18120;Dbxref=GenBank:WP_000667152.1;Name=WP_000667152.1;Ontology_term=GO:0004368;gbkey=CDS;gene=glpB;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461227.1;locus_tag=C9F05_RS18120;product=glycerol-3-phosphate dehydrogenase subunit GlpB;protein_id=WP_000667152.1;transl_table=11
NZ_PYKE01000272.1	RefSeq	gene	2800	4428	.	-	.	ID=gene-C9F05_RS18125;Name=glpA;gbkey=Gene;gene=glpA;gene_biotype=protein_coding;locus_tag=C9F05_RS18125;old_locus_tag=C9F05_18650
NZ_PYKE01000272.1	Protein Homology	CDS	2800	4428	.	-	0	ID=cds-WP_135370517.1;Parent=gene-C9F05_RS18125;Dbxref=GenBank:WP_135370517.1;Name=WP_135370517.1;Ontology_term=GO:0006072,GO:0046174,GO:0004368,GO:0010181,GO:0050660,GO:0009331;gbkey=CDS;gene=glpA;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA,FMN binding|0010181||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA,polyol catabolic process|0046174||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461226.1;locus_tag=C9F05_RS18125;product=anaerobic glycerol-3-phosphate dehydrogenase subunit A;protein_id=WP_135370517.1;transl_table=11
NZ_PYKE01000272.1	RefSeq	gene	4701	6059	.	+	.	ID=gene-C9F05_RS18130;Name=glpT;gbkey=Gene;gene=glpT;gene_biotype=protein_coding;locus_tag=C9F05_RS18130;old_locus_tag=C9F05_18655
NZ_PYKE01000272.1	Protein Homology	CDS	4701	6059	.	+	0	ID=cds-WP_000948739.1;Parent=gene-C9F05_RS18130;Dbxref=GenBank:WP_000948739.1;Name=WP_000948739.1;Ontology_term=GO:0015794,GO:0015169,GO:0016020;gbkey=CDS;gene=glpT;go_component=membrane|0016020||IEA;go_function=glycerol-3-phosphate transmembrane transporter activity|0015169||IEA;go_process=glycerol-3-phosphate transmembrane transport|0015794||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461225.1;locus_tag=C9F05_RS18130;product=glycerol-3-phosphate transporter;protein_id=WP_000948739.1;transl_table=11
NZ_PYKE01000272.1	RefSeq	gene	6064	7134	.	+	.	ID=gene-C9F05_RS18135;Name=glpQ;gbkey=Gene;gene=glpQ;gene_biotype=protein_coding;locus_tag=C9F05_RS18135;old_locus_tag=C9F05_18660
NZ_PYKE01000272.1	Protein Homology	CDS	6064	7134	.	+	0	ID=cds-WP_000858952.1;Parent=gene-C9F05_RS18135;Dbxref=GenBank:WP_000858952.1;Name=WP_000858952.1;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;gene=glpQ;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461224.1;locus_tag=C9F05_RS18135;product=glycerophosphodiester phosphodiesterase;protein_id=WP_000858952.1;transl_table=11
NZ_PYKE01000272.1	RefSeq	gene	7250	8128	.	-	.	ID=gene-C9F05_RS18140;Name=C9F05_RS18140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18140;old_locus_tag=C9F05_18665
NZ_PYKE01000272.1	Protein Homology	CDS	7250	8128	.	-	0	ID=cds-WP_000176719.1;Parent=gene-C9F05_RS18140;Dbxref=GenBank:WP_000176719.1;Name=WP_000176719.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461223.1;locus_tag=C9F05_RS18140;product=LysR family transcriptional regulator;protein_id=WP_000176719.1;transl_table=11
##sequence-region NZ_PYKE01000177.1 1 38649
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000177.1	RefSeq	region	1	38649	.	+	.	ID=NZ_PYKE01000177.1:1..38649;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000177.1	RefSeq	gene	650	1030	.	+	.	ID=gene-C9F05_RS11930;Name=atpI;gbkey=Gene;gene=atpI;gene_biotype=protein_coding;locus_tag=C9F05_RS11930;old_locus_tag=C9F05_12275
NZ_PYKE01000177.1	Protein Homology	CDS	650	1030	.	+	0	ID=cds-WP_000116685.1;Parent=gene-C9F05_RS11930;Dbxref=GenBank:WP_000116685.1;Name=WP_000116685.1;gbkey=CDS;gene=atpI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462771.1;locus_tag=C9F05_RS11930;product=F0F1 ATP synthase subunit I;protein_id=WP_000116685.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	1039	1854	.	+	.	ID=gene-C9F05_RS11935;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=C9F05_RS11935;old_locus_tag=C9F05_12280
NZ_PYKE01000177.1	Protein Homology	CDS	1039	1854	.	+	0	ID=cds-WP_000135632.1;Parent=gene-C9F05_RS11935;Dbxref=GenBank:WP_000135632.1;Name=WP_000135632.1;Ontology_term=GO:0015986,GO:0015078,GO:0045259;gbkey=CDS;gene=atpB;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121454.1;locus_tag=C9F05_RS11935;product=F0F1 ATP synthase subunit A;protein_id=WP_000135632.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	1901	2140	.	+	.	ID=gene-C9F05_RS11940;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=C9F05_RS11940;old_locus_tag=C9F05_12285
NZ_PYKE01000177.1	Protein Homology	CDS	1901	2140	.	+	0	ID=cds-WP_000429386.1;Parent=gene-C9F05_RS11940;Dbxref=GenBank:WP_000429386.1;Name=WP_000429386.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpE;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004246596.1;locus_tag=C9F05_RS11940;product=F0F1 ATP synthase subunit C;protein_id=WP_000429386.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	2200	2670	.	+	.	ID=gene-C9F05_RS11945;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;locus_tag=C9F05_RS11945;old_locus_tag=C9F05_12290
NZ_PYKE01000177.1	Protein Homology	CDS	2200	2670	.	+	0	ID=cds-WP_001052212.1;Parent=gene-C9F05_RS11945;Dbxref=GenBank:WP_001052212.1;Name=WP_001052212.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpF;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001052215.1;locus_tag=C9F05_RS11945;product=F0F1 ATP synthase subunit B;protein_id=WP_001052212.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	2685	3218	.	+	.	ID=gene-C9F05_RS11950;Name=atpH;gbkey=Gene;gene=atpH;gene_biotype=protein_coding;locus_tag=C9F05_RS11950;old_locus_tag=C9F05_12295
NZ_PYKE01000177.1	Protein Homology	CDS	2685	3218	.	+	0	ID=cds-WP_001288957.1;Parent=gene-C9F05_RS11950;Dbxref=GenBank:WP_001288957.1;Name=WP_001288957.1;Ontology_term=GO:0015986,GO:0046933,GO:0016020;gbkey=CDS;gene=atpH;go_component=membrane|0016020||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966593.1;locus_tag=C9F05_RS11950;product=F0F1 ATP synthase subunit delta;protein_id=WP_001288957.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	3231	4772	.	+	.	ID=gene-C9F05_RS11955;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=C9F05_RS11955;old_locus_tag=C9F05_12300
NZ_PYKE01000177.1	Protein Homology	CDS	3231	4772	.	+	0	ID=cds-WP_001176751.1;Parent=gene-C9F05_RS11955;Dbxref=GenBank:WP_001176751.1;Name=WP_001176751.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpA;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001176751.1;locus_tag=C9F05_RS11955;product=F0F1 ATP synthase subunit alpha;protein_id=WP_001176751.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	4823	5686	.	+	.	ID=gene-C9F05_RS11960;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=C9F05_RS11960;old_locus_tag=C9F05_12305
NZ_PYKE01000177.1	Protein Homology	CDS	4823	5686	.	+	0	ID=cds-WP_000896506.1;Parent=gene-C9F05_RS11960;Dbxref=GenBank:WP_000896506.1;Name=WP_000896506.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpG;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882764.1;locus_tag=C9F05_RS11960;product=F0F1 ATP synthase subunit gamma;protein_id=WP_000896506.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	5713	7095	.	+	.	ID=gene-C9F05_RS11965;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=C9F05_RS11965;old_locus_tag=C9F05_12310
NZ_PYKE01000177.1	Protein Homology	CDS	5713	7095	.	+	0	ID=cds-WP_000190499.1;Parent=gene-C9F05_RS11965;Dbxref=GenBank:WP_000190499.1;Name=WP_000190499.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpD;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017800291.1;locus_tag=C9F05_RS11965;product=F0F1 ATP synthase subunit beta;protein_id=WP_000190499.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	7116	7535	.	+	.	ID=gene-C9F05_RS11970;Name=C9F05_RS11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11970;old_locus_tag=C9F05_12315
NZ_PYKE01000177.1	Protein Homology	CDS	7116	7535	.	+	0	ID=cds-WP_001251971.1;Parent=gene-C9F05_RS11970;Dbxref=GenBank:WP_001251971.1;Name=WP_001251971.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001251972.1;locus_tag=C9F05_RS11970;product=F0F1 ATP synthase subunit epsilon;protein_id=WP_001251971.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	7765	8463	.	+	.	ID=gene-C9F05_RS11975;Name=C9F05_RS11975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11975;old_locus_tag=C9F05_12320
NZ_PYKE01000177.1	Protein Homology	CDS	7765	8463	.	+	0	ID=cds-WP_000009904.1;Parent=gene-C9F05_RS11975;Dbxref=GenBank:WP_000009904.1;Name=WP_000009904.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462762.1;locus_tag=C9F05_RS11975;product=Bax inhibitor-1/YccA family protein;protein_id=WP_000009904.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	8783	10153	.	+	.	ID=gene-C9F05_RS11985;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=C9F05_RS11985;old_locus_tag=C9F05_12330
NZ_PYKE01000177.1	Protein Homology	CDS	8783	10153	.	+	0	ID=cds-WP_000934851.1;Parent=gene-C9F05_RS11985;Dbxref=GenBank:WP_000934851.1;Name=WP_000934851.1;Ontology_term=GO:0000902,GO:0006048,GO:0009252,GO:0000287,GO:0003977,GO:0019134;gbkey=CDS;gene=glmU;go_function=magnesium ion binding|0000287||IEA,UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA,glucosamine-1-phosphate N-acetyltransferase activity|0019134||IEA;go_process=cell morphogenesis|0000902||IEA,UDP-N-acetylglucosamine biosynthetic process|0006048||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462761.1;locus_tag=C9F05_RS11985;product=bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;protein_id=WP_000934851.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	10342	12171	.	+	.	ID=gene-C9F05_RS11990;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=C9F05_RS11990;old_locus_tag=C9F05_12335
NZ_PYKE01000177.1	Protein Homology	CDS	10342	12171	.	+	0	ID=cds-WP_000334058.1;Parent=gene-C9F05_RS11990;Dbxref=GenBank:WP_000334058.1;Name=WP_000334058.1;Ontology_term=GO:1901137,GO:0004360;gbkey=CDS;gene=glmS;go_function=glutamine-fructose-6-phosphate transaminase (isomerizing) activity|0004360||IEA;go_process=carbohydrate derivative biosynthetic process|1901137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121462.1;locus_tag=C9F05_RS11990;product=glutamine--fructose-6-phosphate transaminase (isomerizing);protein_id=WP_000334058.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	12321	14078	.	-	.	ID=gene-C9F05_RS11995;Name=C9F05_RS11995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11995;old_locus_tag=C9F05_12340
NZ_PYKE01000177.1	Protein Homology	CDS	12321	14078	.	-	0	ID=cds-WP_108638642.1;Parent=gene-C9F05_RS11995;Dbxref=GenBank:WP_108638642.1;Name=WP_108638642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462759.1;locus_tag=C9F05_RS11995;product=SgrR family transcriptional regulator;protein_id=WP_108638642.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	14173	14991	.	+	.	ID=gene-C9F05_RS12000;Name=C9F05_RS12000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12000;old_locus_tag=C9F05_12345
NZ_PYKE01000177.1	Protein Homology	CDS	14173	14991	.	+	0	ID=cds-WP_000166711.1;Parent=gene-C9F05_RS12000;Dbxref=GenBank:WP_000166711.1;Name=WP_000166711.1;Ontology_term=GO:0004764;gbkey=CDS;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462758.1;locus_tag=C9F05_RS12000;product=shikimate 5-dehydrogenase;protein_id=WP_000166711.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	15040	16413	.	+	.	ID=gene-C9F05_RS12005;Name=C9F05_RS12005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12005;old_locus_tag=C9F05_12350
NZ_PYKE01000177.1	Protein Homology	CDS	15040	16413	.	+	0	ID=cds-WP_050067758.1;Parent=gene-C9F05_RS12005;Dbxref=GenBank:WP_050067758.1;Name=WP_050067758.1;Ontology_term=GO:0009401,GO:0022877,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462757.1;locus_tag=C9F05_RS12005;product=fructose-specific PTS transporter subunit EIIC;protein_id=WP_050067758.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	16579	17619	.	+	.	ID=gene-C9F05_RS12010;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=C9F05_RS12010;old_locus_tag=C9F05_12355
NZ_PYKE01000177.1	Protein Homology	CDS	16579	17619	.	+	0	ID=cds-WP_000867131.1;Parent=gene-C9F05_RS12010;Dbxref=GenBank:WP_000867131.1;Name=WP_000867131.1;Ontology_term=GO:0035435,GO:0042301,GO:0043190;gbkey=CDS;gene=pstS;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=phosphate ion binding|0042301||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462756.1;locus_tag=C9F05_RS12010;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_000867131.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	17755	18714	.	+	.	ID=gene-C9F05_RS12015;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=C9F05_RS12015;old_locus_tag=C9F05_12360
NZ_PYKE01000177.1	Protein Homology	CDS	17755	18714	.	+	0	ID=cds-WP_000741630.1;Parent=gene-C9F05_RS12015;Dbxref=GenBank:WP_000741630.1;Name=WP_000741630.1;Ontology_term=GO:0006817,GO:0055085,GO:0016020;gbkey=CDS;gene=pstC;go_component=membrane|0016020||IEA;go_process=phosphate ion transport|0006817||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008806729.1;locus_tag=C9F05_RS12015;product=phosphate ABC transporter permease PstC;protein_id=WP_000741630.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	18714	19604	.	+	.	ID=gene-C9F05_RS12020;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=C9F05_RS12020;old_locus_tag=C9F05_12365
NZ_PYKE01000177.1	Protein Homology	CDS	18714	19604	.	+	0	ID=cds-WP_000212199.1;Parent=gene-C9F05_RS12020;Dbxref=GenBank:WP_000212199.1;Name=WP_000212199.1;Ontology_term=GO:0035435,GO:0005886;gbkey=CDS;gene=pstA;go_component=plasma membrane|0005886||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462754.1;locus_tag=C9F05_RS12020;product=phosphate ABC transporter permease PstA;protein_id=WP_000212199.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	19691	20464	.	+	.	ID=gene-C9F05_RS12025;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=C9F05_RS12025;old_locus_tag=C9F05_12370
NZ_PYKE01000177.1	Protein Homology	CDS	19691	20464	.	+	0	ID=cds-WP_000063118.1;Parent=gene-C9F05_RS12025;Dbxref=GenBank:WP_000063118.1;Name=WP_000063118.1;Ontology_term=GO:0006817,GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000063125.1;locus_tag=C9F05_RS12025;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_000063118.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	20479	21204	.	+	.	ID=gene-C9F05_RS12030;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=C9F05_RS12030;old_locus_tag=C9F05_12375
NZ_PYKE01000177.1	Protein Homology	CDS	20479	21204	.	+	0	ID=cds-WP_000377800.1;Parent=gene-C9F05_RS12030;Dbxref=GenBank:WP_000377800.1;Name=WP_000377800.1;Ontology_term=GO:0030643;gbkey=CDS;gene=phoU;go_process=intracellular phosphate ion homeostasis|0030643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462752.1;locus_tag=C9F05_RS12030;product=phosphate signaling complex protein PhoU;protein_id=WP_000377800.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	21299	21964	.	-	.	ID=gene-C9F05_RS12035;Name=yieH;gbkey=Gene;gene=yieH;gene_biotype=protein_coding;locus_tag=C9F05_RS12035;old_locus_tag=C9F05_12380
NZ_PYKE01000177.1	Protein Homology	CDS	21299	21964	.	-	0	ID=cds-WP_135370312.1;Parent=gene-C9F05_RS12035;Dbxref=GenBank:WP_135370312.1;Name=WP_135370312.1;gbkey=CDS;gene=yieH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462751.1;locus_tag=C9F05_RS12035;product=6-phosphogluconate phosphatase;protein_id=WP_135370312.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	22133	23470	.	+	.	ID=gene-C9F05_RS12040;Name=adeP;gbkey=Gene;gene=adeP;gene_biotype=protein_coding;locus_tag=C9F05_RS12040;old_locus_tag=C9F05_12385
NZ_PYKE01000177.1	Protein Homology	CDS	22133	23470	.	+	0	ID=cds-WP_001747550.1;Parent=gene-C9F05_RS12040;Dbxref=GenBank:WP_001747550.1;Name=WP_001747550.1;gbkey=CDS;gene=adeP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312678.1;locus_tag=C9F05_RS12040;product=adenine permease AdeP;protein_id=WP_001747550.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	23516	23941	.	+	.	ID=gene-C9F05_RS12045;Name=C9F05_RS12045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12045;old_locus_tag=C9F05_12390
NZ_PYKE01000177.1	Protein Homology	CDS	23516	23941	.	+	0	ID=cds-WP_001747551.1;Parent=gene-C9F05_RS12045;Dbxref=GenBank:WP_001747551.1;Name=WP_001747551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747551.1;locus_tag=C9F05_RS12045;product=hypothetical protein;protein_id=WP_001747551.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	23948	24532	.	-	.	ID=gene-C9F05_RS12050;Name=C9F05_RS12050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12050;old_locus_tag=C9F05_12395
NZ_PYKE01000177.1	Protein Homology	CDS	23948	24532	.	-	0	ID=cds-WP_076938353.1;Parent=gene-C9F05_RS12050;Dbxref=GenBank:WP_076938353.1;Name=WP_076938353.1;Ontology_term=GO:0008752,GO:0008753,GO:0010181,GO:0016491,GO:0050136,GO:0052873;gbkey=CDS;go_function=FMN reductase [NAD(P)H] activity|0008752||IEA,NADPH dehydrogenase (quinone) activity|0008753||IEA,FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA,NADH dehydrogenase (quinone) (non-electrogenic) activity|0050136||IEA,FMN reductase (NADPH) activity|0052873||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001541168.1;locus_tag=C9F05_RS12050;product=NADPH-dependent FMN reductase;protein_id=WP_076938353.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	24532	25287	.	-	.	ID=gene-C9F05_RS12055;Name=C9F05_RS12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12055;old_locus_tag=C9F05_12400
NZ_PYKE01000177.1	Protein Homology	CDS	24532	25287	.	-	0	ID=cds-WP_135370313.1;Parent=gene-C9F05_RS12055;Dbxref=GenBank:WP_135370313.1;Name=WP_135370313.1;Ontology_term=GO:0008897;gbkey=CDS;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462748.1;locus_tag=C9F05_RS12055;product=4'-phosphopantetheinyl transferase family protein;protein_id=WP_135370313.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	25445	26404	.	-	.	ID=gene-C9F05_RS12060;Name=yidZ;gbkey=Gene;gene=yidZ;gene_biotype=protein_coding;locus_tag=C9F05_RS12060;old_locus_tag=C9F05_12405
NZ_PYKE01000177.1	Protein Homology	CDS	25445	26404	.	-	0	ID=cds-WP_000749366.1;Parent=gene-C9F05_RS12060;Dbxref=GenBank:WP_000749366.1;Name=WP_000749366.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yidZ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462747.1;locus_tag=C9F05_RS12060;product=HTH-type transcriptional regulator YidZ;protein_id=WP_000749366.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	26373	27560	.	-	.	ID=gene-C9F05_RS12065;Name=C9F05_RS12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12065;old_locus_tag=C9F05_12410
NZ_PYKE01000177.1	Protein Homology	CDS	26373	27560	.	-	0	ID=cds-WP_135370314.1;Parent=gene-C9F05_RS12065;Dbxref=GenBank:WP_135370314.1;Name=WP_135370314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001608974.1;locus_tag=C9F05_RS12065;product=MFS transporter;protein_id=WP_135370314.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	27743	29107	.	-	.	ID=gene-C9F05_RS12070;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=C9F05_RS12070;old_locus_tag=C9F05_12415
NZ_PYKE01000177.1	Protein Homology	CDS	27743	29107	.	-	0	ID=cds-WP_000019081.1;Parent=gene-C9F05_RS12070;Dbxref=GenBank:WP_000019081.1;Name=WP_000019081.1;Ontology_term=GO:0006400,GO:0003924,GO:0005515,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,protein binding|0005515||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462743.1;locus_tag=C9F05_RS12070;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=WP_000019081.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	29249	30895	.	-	.	ID=gene-C9F05_RS12075;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=C9F05_RS12075;old_locus_tag=C9F05_12420
NZ_PYKE01000177.1	Protein Homology	CDS	29249	30895	.	-	0	ID=cds-WP_000378283.1;Parent=gene-C9F05_RS12075;Dbxref=GenBank:WP_000378283.1;Name=WP_000378283.1;Ontology_term=GO:0032977,GO:0016020;gbkey=CDS;gene=yidC;go_component=membrane|0016020||IEA;go_function=membrane insertase activity|0032977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462742.1;locus_tag=C9F05_RS12075;product=membrane protein insertase YidC;protein_id=WP_000378283.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	30898	31155	.	-	.	ID=gene-C9F05_RS12080;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=C9F05_RS12080;old_locus_tag=C9F05_12425
NZ_PYKE01000177.1	Protein Homology	CDS	30898	31155	.	-	0	ID=cds-WP_001307474.1;Parent=gene-C9F05_RS12080;Dbxref=GenBank:WP_001307474.1;Name=WP_001307474.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462741.1;locus_tag=C9F05_RS12080;product=membrane protein insertion efficiency factor YidD;protein_id=WP_001307474.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	31119	31478	.	-	.	ID=gene-C9F05_RS12085;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=C9F05_RS12085;old_locus_tag=C9F05_12430
NZ_PYKE01000177.1	Protein Homology	CDS	31119	31478	.	-	0	ID=cds-WP_000239725.1;Parent=gene-C9F05_RS12085;Dbxref=GenBank:WP_000239725.1;Name=WP_000239725.1;Ontology_term=GO:0008033,GO:0000049,GO:0004526;gbkey=CDS;gene=rnpA;go_function=tRNA binding|0000049||IEA,ribonuclease P activity|0004526||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014172301.1;locus_tag=C9F05_RS12085;product=ribonuclease P protein component;protein_id=WP_000239725.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	31495	31635	.	-	.	ID=gene-C9F05_RS12090;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=C9F05_RS12090;old_locus_tag=C9F05_12435
NZ_PYKE01000177.1	Protein Homology	CDS	31495	31635	.	-	0	ID=cds-WP_000831330.1;Parent=gene-C9F05_RS12090;Dbxref=GenBank:WP_000831330.1;Name=WP_000831330.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001686914.1;locus_tag=C9F05_RS12090;product=50S ribosomal protein L34;protein_id=WP_000831330.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	32296	33696	.	+	.	ID=gene-C9F05_RS12095;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=C9F05_RS12095;old_locus_tag=C9F05_12440
NZ_PYKE01000177.1	Protein Homology	CDS	32296	33696	.	+	0	ID=cds-WP_000059093.1;Parent=gene-C9F05_RS12095;Dbxref=GenBank:WP_000059093.1;Name=WP_000059093.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462738.1;locus_tag=C9F05_RS12095;product=chromosomal replication initiator protein DnaA;protein_id=WP_000059093.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	33701	34801	.	+	.	ID=gene-C9F05_RS12100;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=C9F05_RS12100;old_locus_tag=C9F05_12445
NZ_PYKE01000177.1	Protein Homology	CDS	33701	34801	.	+	0	ID=cds-WP_000673474.1;Parent=gene-C9F05_RS12100;Dbxref=GenBank:WP_000673474.1;Name=WP_000673474.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006177590.1;locus_tag=C9F05_RS12100;product=DNA polymerase III subunit beta;protein_id=WP_000673474.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	34949	36022	.	+	.	ID=gene-C9F05_RS12105;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=C9F05_RS12105;old_locus_tag=C9F05_12450
NZ_PYKE01000177.1	Protein Homology	CDS	34949	36022	.	+	0	ID=cds-WP_000060081.1;Parent=gene-C9F05_RS12105;Dbxref=GenBank:WP_000060081.1;Name=WP_000060081.1;Note=All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair.;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0009432,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121479.1;locus_tag=C9F05_RS12105;product=DNA replication/repair protein RecF;protein_id=WP_000060081.1;transl_table=11
NZ_PYKE01000177.1	RefSeq	gene	36051	38465	.	+	.	ID=gene-C9F05_RS12110;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=C9F05_RS12110;old_locus_tag=C9F05_12455
NZ_PYKE01000177.1	Protein Homology	CDS	36051	38465	.	+	0	ID=cds-WP_000072047.1;Parent=gene-C9F05_RS12110;Dbxref=GenBank:WP_000072047.1;Name=WP_000072047.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=gyrB;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121480.1;locus_tag=C9F05_RS12110;product=DNA topoisomerase (ATP-hydrolyzing) subunit B;protein_id=WP_000072047.1;transl_table=11
##sequence-region NZ_PYKE01000263.1 1 85057
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000263.1	RefSeq	region	1	85057	.	+	.	ID=NZ_PYKE01000263.1:1..85057;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000263.1	RefSeq	gene	1	1053	.	-	.	ID=gene-C9F05_RS17185;Name=C9F05_RS17185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17185;old_locus_tag=C9F05_17680;partial=true;start_range=.,1
NZ_PYKE01000263.1	Protein Homology	CDS	1	1053	.	-	0	ID=cds-WP_255121309.1;Parent=gene-C9F05_RS17185;Dbxref=GenBank:WP_255121309.1;Name=WP_255121309.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015995288.1;locus_tag=C9F05_RS17185;partial=true;product=DUF6056 family protein;protein_id=WP_255121309.1;start_range=.,1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	1059	1976	.	-	.	ID=gene-C9F05_RS17190;Name=C9F05_RS17190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17190;old_locus_tag=C9F05_17685
NZ_PYKE01000263.1	Protein Homology	CDS	1059	1976	.	-	0	ID=cds-WP_058116683.1;Parent=gene-C9F05_RS17190;Dbxref=GenBank:WP_058116683.1;Name=WP_058116683.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015995289.1;locus_tag=C9F05_RS17190;product=glycosyltransferase family 2 protein;protein_id=WP_058116683.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	1973	2335	.	-	.	ID=gene-C9F05_RS17195;Name=C9F05_RS17195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17195;old_locus_tag=C9F05_17690
NZ_PYKE01000263.1	Protein Homology	CDS	1973	2335	.	-	0	ID=cds-WP_050067774.1;Parent=gene-C9F05_RS17195;Dbxref=GenBank:WP_050067774.1;Name=WP_050067774.1;Ontology_term=GO:0000271,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012125606.1;locus_tag=C9F05_RS17195;product=GtrA family protein;protein_id=WP_050067774.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	pseudogene	2471	3663	.	-	.	ID=gene-C9F05_RS17200;Name=C9F05_RS17200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS17200;old_locus_tag=C9F05_17695;pseudo=true
NZ_PYKE01000263.1	Protein Homology	CDS	2471	3663	.	-	0	ID=cds-C9F05_RS17200;Parent=gene-C9F05_RS17200;Note=frameshifted;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000958690.1;locus_tag=C9F05_RS17200;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	3765	3839	.	-	.	ID=gene-C9F05_RS17205;Name=C9F05_RS17205;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17205;old_locus_tag=C9F05_17700
NZ_PYKE01000263.1	tRNAscan-SE	tRNA	3765	3839	.	-	.	ID=rna-C9F05_RS17205;Parent=gene-C9F05_RS17205;anticodon=(pos:complement(3804..3806));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17205;product=tRNA-Arg
NZ_PYKE01000263.1	tRNAscan-SE	exon	3765	3839	.	-	.	ID=exon-C9F05_RS17205-1;Parent=rna-C9F05_RS17205;anticodon=(pos:complement(3804..3806));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17205;product=tRNA-Arg
NZ_PYKE01000263.1	RefSeq	gene	3915	4856	.	-	.	ID=gene-C9F05_RS17210;Name=C9F05_RS17210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17210;old_locus_tag=C9F05_17705
NZ_PYKE01000263.1	Protein Homology	CDS	3915	4856	.	-	0	ID=cds-WP_000377769.1;Parent=gene-C9F05_RS17210;Dbxref=GenBank:WP_000377769.1;Name=WP_000377769.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461335.1;locus_tag=C9F05_RS17210;product=formate/nitrite transporter family protein;protein_id=WP_000377769.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	5145	5900	.	+	.	ID=gene-C9F05_RS17215;Name=mlaA;gbkey=Gene;gene=mlaA;gene_biotype=protein_coding;locus_tag=C9F05_RS17215;old_locus_tag=C9F05_17710
NZ_PYKE01000263.1	Protein Homology	CDS	5145	5900	.	+	0	ID=cds-WP_000776787.1;Parent=gene-C9F05_RS17215;Dbxref=GenBank:WP_000776787.1;Name=WP_000776787.1;Ontology_term=GO:0016020;gbkey=CDS;gene=mlaA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461334.1;locus_tag=C9F05_RS17215;product=phospholipid-binding lipoprotein MlaA;protein_id=WP_000776787.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	5961	7268	.	-	.	ID=gene-C9F05_RS17220;Name=fadL;gbkey=Gene;gene=fadL;gene_biotype=protein_coding;locus_tag=C9F05_RS17220;old_locus_tag=C9F05_17715
NZ_PYKE01000263.1	Protein Homology	CDS	5961	7268	.	-	0	ID=cds-WP_001518618.1;Parent=gene-C9F05_RS17220;Dbxref=GenBank:WP_001518618.1;Name=WP_001518618.1;gbkey=CDS;gene=fadL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416846.2;locus_tag=C9F05_RS17220;product=long-chain fatty acid transporter FadL;protein_id=WP_001518618.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	7639	7923	.	+	.	ID=gene-C9F05_RS17225;Name=C9F05_RS17225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17225;old_locus_tag=C9F05_17720
NZ_PYKE01000263.1	Protein Homology	CDS	7639	7923	.	+	0	ID=cds-WP_000030904.1;Parent=gene-C9F05_RS17225;Dbxref=GenBank:WP_000030904.1;Name=WP_000030904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129756.1;locus_tag=C9F05_RS17225;product=YfcZ/YiiS family protein;protein_id=WP_000030904.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	8101	9411	.	+	.	ID=gene-C9F05_RS17230;Name=fadI;gbkey=Gene;gene=fadI;gene_biotype=protein_coding;locus_tag=C9F05_RS17230;old_locus_tag=C9F05_17725
NZ_PYKE01000263.1	Protein Homology	CDS	8101	9411	.	+	0	ID=cds-WP_001248126.1;Parent=gene-C9F05_RS17230;Dbxref=GenBank:WP_001248126.1;Name=WP_001248126.1;Ontology_term=GO:0006631,GO:0016042,GO:0003988,GO:0005737;gbkey=CDS;gene=fadI;go_component=cytoplasm|0005737||IEA;go_function=acetyl-CoA C-acyltransferase activity|0003988||IEA;go_process=fatty acid metabolic process|0006631||IEA,lipid catabolic process|0016042||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461331.2;locus_tag=C9F05_RS17230;product=acetyl-CoA C-acyltransferase FadI;protein_id=WP_001248126.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	9411	11558	.	+	.	ID=gene-C9F05_RS17235;Name=fadJ;gbkey=Gene;gene=fadJ;gene_biotype=protein_coding;locus_tag=C9F05_RS17235;old_locus_tag=C9F05_17730
NZ_PYKE01000263.1	Protein Homology	CDS	9411	11558	.	+	0	ID=cds-WP_135370499.1;Parent=gene-C9F05_RS17235;Dbxref=GenBank:WP_135370499.1;Name=WP_135370499.1;Ontology_term=GO:0009062,GO:0003857,GO:0004300,GO:0008692,GO:0051287;gbkey=CDS;gene=fadJ;go_function=(3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity|0003857||IEA,enoyl-CoA hydratase activity|0004300||IEA,3-hydroxybutyryl-CoA epimerase activity|0008692||IEA,NAD binding|0051287||IEA;go_process=fatty acid catabolic process|0009062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461330.1;locus_tag=C9F05_RS17235;product=fatty acid oxidation complex subunit alpha FadJ;protein_id=WP_135370499.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	11767	12252	.	+	.	ID=gene-C9F05_RS17240;Name=sixA;gbkey=Gene;gene=sixA;gene_biotype=protein_coding;locus_tag=C9F05_RS17240;old_locus_tag=C9F05_17735
NZ_PYKE01000263.1	Protein Homology	CDS	11767	12252	.	+	0	ID=cds-WP_050067773.1;Parent=gene-C9F05_RS17240;Dbxref=GenBank:WP_050067773.1;Name=WP_050067773.1;Ontology_term=GO:0036211,GO:0101006,GO:0005737;gbkey=CDS;gene=sixA;go_component=cytoplasm|0005737||IEA;go_function=protein histidine phosphatase activity|0101006||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461329.1;locus_tag=C9F05_RS17240;product=phosphohistidine phosphatase SixA;protein_id=WP_050067773.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	12352	12903	.	-	.	ID=gene-C9F05_RS17245;Name=smrB;gbkey=Gene;gene=smrB;gene_biotype=protein_coding;locus_tag=C9F05_RS17245;old_locus_tag=C9F05_17740
NZ_PYKE01000263.1	Protein Homology	CDS	12352	12903	.	-	0	ID=cds-WP_127821155.1;Parent=gene-C9F05_RS17245;Dbxref=GenBank:WP_127821155.1;Name=WP_127821155.1;gbkey=CDS;gene=smrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461328.1;locus_tag=C9F05_RS17245;product=endonuclease SmrB;protein_id=WP_127821155.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	13069	14001	.	+	.	ID=gene-C9F05_RS17250;Name=prmB;gbkey=Gene;gene=prmB;gene_biotype=protein_coding;locus_tag=C9F05_RS17250;old_locus_tag=C9F05_17745
NZ_PYKE01000263.1	Protein Homology	CDS	13069	14001	.	+	0	ID=cds-WP_001619154.1;Parent=gene-C9F05_RS17250;Dbxref=GenBank:WP_001619154.1;Name=WP_001619154.1;Ontology_term=GO:0018364,GO:0042273,GO:0008276,GO:0008757;gbkey=CDS;gene=prmB;go_function=protein methyltransferase activity|0008276||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=peptidyl-glutamine methylation|0018364||IEA,ribosomal large subunit biogenesis|0042273||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129736.1;locus_tag=C9F05_RS17250;product=50S ribosomal protein L3 N(5)-glutamine methyltransferase;protein_id=WP_001619154.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	14037	15122	.	+	.	ID=gene-C9F05_RS17255;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=C9F05_RS17255;old_locus_tag=C9F05_17750
NZ_PYKE01000263.1	Protein Homology	CDS	14037	15122	.	+	0	ID=cds-WP_000918457.1;Parent=gene-C9F05_RS17255;Dbxref=GenBank:WP_000918457.1;Name=WP_000918457.1;Ontology_term=GO:0009073,GO:0004107;gbkey=CDS;gene=aroC;go_function=chorismate synthase activity|0004107||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129642.1;locus_tag=C9F05_RS17255;product=chorismate synthase;protein_id=WP_000918457.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	15126	15950	.	+	.	ID=gene-C9F05_RS17260;Name=mepA;gbkey=Gene;gene=mepA;gene_biotype=protein_coding;locus_tag=C9F05_RS17260;old_locus_tag=C9F05_17755
NZ_PYKE01000263.1	Protein Homology	CDS	15126	15950	.	+	0	ID=cds-WP_000750429.1;Parent=gene-C9F05_RS17260;Dbxref=GenBank:WP_000750429.1;Name=WP_000750429.1;Ontology_term=GO:0006508,GO:0004252,GO:0030288;gbkey=CDS;gene=mepA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461325.1;locus_tag=C9F05_RS17260;product=penicillin-insensitive murein endopeptidase;protein_id=WP_000750429.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	15950	16759	.	+	.	ID=gene-C9F05_RS17265;Name=C9F05_RS17265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17265;old_locus_tag=C9F05_17760
NZ_PYKE01000263.1	Protein Homology	CDS	15950	16759	.	+	0	ID=cds-WP_000368599.1;Parent=gene-C9F05_RS17265;Dbxref=GenBank:WP_000368599.1;Name=WP_000368599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461324.1;locus_tag=C9F05_RS17265;product=sulfite exporter TauE/SafE family protein;protein_id=WP_000368599.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	16759	17307	.	+	.	ID=gene-C9F05_RS17270;Name=C9F05_RS17270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17270;old_locus_tag=C9F05_17765
NZ_PYKE01000263.1	Protein Homology	CDS	16759	17307	.	+	0	ID=cds-WP_001089211.1;Parent=gene-C9F05_RS17270;Dbxref=GenBank:WP_001089211.1;Name=WP_001089211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461323.1;locus_tag=C9F05_RS17270;product=elongation factor P hydroxylase;protein_id=WP_001089211.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	17340	17615	.	+	.	ID=gene-C9F05_RS17275;Name=C9F05_RS17275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17275;old_locus_tag=C9F05_17770
NZ_PYKE01000263.1	Protein Homology	CDS	17340	17615	.	+	0	ID=cds-WP_000559749.1;Parent=gene-C9F05_RS17275;Dbxref=GenBank:WP_000559749.1;Name=WP_000559749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461322.1;locus_tag=C9F05_RS17275;product=YfcL family protein;protein_id=WP_000559749.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	17667	19667	.	-	.	ID=gene-C9F05_RS17280;Name=mnmC;gbkey=Gene;gene=mnmC;gene_biotype=protein_coding;locus_tag=C9F05_RS17280;old_locus_tag=C9F05_17775
NZ_PYKE01000263.1	Protein Homology	CDS	17667	19667	.	-	0	ID=cds-WP_167851641.1;Parent=gene-C9F05_RS17280;Dbxref=GenBank:WP_167851641.1;Name=WP_167851641.1;Ontology_term=GO:0008033,GO:0004808,GO:0016491;gbkey=CDS;gene=mnmC;go_function=tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity|0004808||IEA,oxidoreductase activity|0016491||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001540542.1;locus_tag=C9F05_RS17280;product=bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;protein_id=WP_167851641.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	19827	21041	.	+	.	ID=gene-C9F05_RS17285;Name=fabB;gbkey=Gene;gene=fabB;gene_biotype=protein_coding;locus_tag=C9F05_RS17285;old_locus_tag=C9F05_17780
NZ_PYKE01000263.1	Protein Homology	CDS	19827	21041	.	+	0	ID=cds-WP_000817161.1;Parent=gene-C9F05_RS17285;Dbxref=GenBank:WP_000817161.1;Name=WP_000817161.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabB;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461320.1;locus_tag=C9F05_RS17285;product=beta-ketoacyl-ACP synthase I;protein_id=WP_000817161.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	21139	21795	.	+	.	ID=gene-C9F05_RS17290;Name=C9F05_RS17290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17290;old_locus_tag=C9F05_17785
NZ_PYKE01000263.1	Protein Homology	CDS	21139	21795	.	+	0	ID=cds-WP_135370501.1;Parent=gene-C9F05_RS17290;Dbxref=GenBank:WP_135370501.1;Name=WP_135370501.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461319.1;locus_tag=C9F05_RS17290;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_135370501.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	21862	22380	.	-	.	ID=gene-C9F05_RS17295;Name=C9F05_RS17295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17295;old_locus_tag=C9F05_17790
NZ_PYKE01000263.1	Protein Homology	CDS	21862	22380	.	-	0	ID=cds-WP_000847540.1;Parent=gene-C9F05_RS17295;Dbxref=GenBank:WP_000847540.1;Name=WP_000847540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461318.1;locus_tag=C9F05_RS17295;product=YbjP/YqhG family protein;protein_id=WP_000847540.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	pseudogene	22380	22697	.	-	.	ID=gene-C9F05_RS24190;Name=C9F05_RS24190;end_range=22697,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24190;old_locus_tag=C9F05_17795;partial=true;pseudo=true
NZ_PYKE01000263.1	Protein Homology	CDS	22380	22697	.	-	0	ID=cds-C9F05_RS24190;Parent=gene-C9F05_RS24190;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=22697,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461317.1;locus_tag=C9F05_RS24190;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000263.1	RefSeq	pseudogene	22643	22774	.	-	.	ID=gene-C9F05_RS23705;Name=C9F05_RS23705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23705;old_locus_tag=C9F05_17800;partial=true;pseudo=true;start_range=.,22643
NZ_PYKE01000263.1	Protein Homology	CDS	22643	22774	.	-	0	ID=cds-C9F05_RS23705;Parent=gene-C9F05_RS23705;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461316.1;locus_tag=C9F05_RS23705;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,22643;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	22947	23321	.	+	.	ID=gene-C9F05_RS17310;Name=C9F05_RS17310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17310;old_locus_tag=C9F05_17805
NZ_PYKE01000263.1	Protein Homology	CDS	22947	23321	.	+	0	ID=cds-WP_023138696.1;Parent=gene-C9F05_RS17310;Dbxref=GenBank:WP_023138696.1;Name=WP_023138696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461315.1;locus_tag=C9F05_RS17310;product=hypothetical protein;protein_id=WP_023138696.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	23501	24679	.	+	.	ID=gene-C9F05_RS17315;Name=C9F05_RS17315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17315;old_locus_tag=C9F05_17810
NZ_PYKE01000263.1	Protein Homology	CDS	23501	24679	.	+	0	ID=cds-WP_001533705.1;Parent=gene-C9F05_RS17315;Dbxref=GenBank:WP_001533705.1;Name=WP_001533705.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461314.1;locus_tag=C9F05_RS17315;product=MFS transporter;protein_id=WP_001533705.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	24676	25677	.	-	.	ID=gene-C9F05_RS17320;Name=flk;gbkey=Gene;gene=flk;gene_biotype=protein_coding;locus_tag=C9F05_RS17320;old_locus_tag=C9F05_17815
NZ_PYKE01000263.1	Protein Homology	CDS	24676	25677	.	-	0	ID=cds-WP_000553395.1;Parent=gene-C9F05_RS17320;Dbxref=GenBank:WP_000553395.1;Name=WP_000553395.1;Ontology_term=GO:0010468,GO:0016020;gbkey=CDS;gene=flk;go_component=membrane|0016020||IEA;go_process=regulation of gene expression|0010468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461313.1;locus_tag=C9F05_RS17320;product=flagella biosynthesis regulator Flk;protein_id=WP_000553395.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	25781	26917	.	+	.	ID=gene-C9F05_RS17325;Name=pdxB;gbkey=Gene;gene=pdxB;gene_biotype=protein_coding;locus_tag=C9F05_RS17325;old_locus_tag=C9F05_17820
NZ_PYKE01000263.1	Protein Homology	CDS	25781	26917	.	+	0	ID=cds-WP_023203554.1;Parent=gene-C9F05_RS17325;Dbxref=GenBank:WP_023203554.1;Name=WP_023203554.1;Ontology_term=GO:0008615,GO:0033711,GO:0046983,GO:0051287;gbkey=CDS;gene=pdxB;go_function=4-phosphoerythronate dehydrogenase activity|0033711||IEA,protein dimerization activity|0046983||IEA,NAD binding|0051287||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461312.1;locus_tag=C9F05_RS17325;product=4-phosphoerythronate dehydrogenase PdxB;protein_id=WP_023203554.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	26985	27998	.	+	.	ID=gene-C9F05_RS17330;Name=C9F05_RS17330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17330;old_locus_tag=C9F05_17825
NZ_PYKE01000263.1	Protein Homology	CDS	26985	27998	.	+	0	ID=cds-WP_135370502.1;Parent=gene-C9F05_RS17330;Dbxref=GenBank:WP_135370502.1;Name=WP_135370502.1;Ontology_term=GO:0008652,GO:0016620,GO:0046983,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,protein dimerization activity|0046983||IEA,NAD binding|0051287||IEA;go_process=amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461311.1;locus_tag=C9F05_RS17330;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_135370502.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	27998	28810	.	+	.	ID=gene-C9F05_RS17335;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=C9F05_RS17335;old_locus_tag=C9F05_17830
NZ_PYKE01000263.1	Protein Homology	CDS	27998	28810	.	+	0	ID=cds-WP_000016631.1;Parent=gene-C9F05_RS17335;Dbxref=GenBank:WP_000016631.1;Name=WP_000016631.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461310.1;locus_tag=C9F05_RS17335;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=WP_000016631.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	28859	29518	.	+	.	ID=gene-C9F05_RS17340;Name=C9F05_RS17340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17340;old_locus_tag=C9F05_17835
NZ_PYKE01000263.1	Protein Homology	CDS	28859	29518	.	+	0	ID=cds-WP_023205080.1;Parent=gene-C9F05_RS17340;Dbxref=GenBank:WP_023205080.1;Name=WP_023205080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461309.1;locus_tag=C9F05_RS17340;product=DedA family protein;protein_id=WP_023205080.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	29668	30582	.	+	.	ID=gene-C9F05_RS17345;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=C9F05_RS17345;old_locus_tag=C9F05_17840
NZ_PYKE01000263.1	Protein Homology	CDS	29668	30582	.	+	0	ID=cds-WP_000118383.1;Parent=gene-C9F05_RS17345;Dbxref=GenBank:WP_000118383.1;Name=WP_000118383.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accD;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461308.1;locus_tag=C9F05_RS17345;product=acetyl-CoA carboxylase%2C carboxyltransferase subunit beta;protein_id=WP_000118383.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	30650	31918	.	+	.	ID=gene-C9F05_RS17350;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=C9F05_RS17350;old_locus_tag=C9F05_17845
NZ_PYKE01000263.1	Protein Homology	CDS	30650	31918	.	+	0	ID=cds-WP_086811610.1;Parent=gene-C9F05_RS17350;Dbxref=GenBank:WP_086811610.1;Name=WP_086811610.1;Ontology_term=GO:0009396,GO:0004326,GO:0005524,GO:0016874;gbkey=CDS;gene=folC;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461307.1;locus_tag=C9F05_RS17350;product=bifunctional tetrahydrofolate synthase/dihydrofolate synthase;protein_id=WP_086811610.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	31908	32582	.	+	.	ID=gene-C9F05_RS17355;Name=dedD;gbkey=Gene;gene=dedD;gene_biotype=protein_coding;locus_tag=C9F05_RS17355;old_locus_tag=C9F05_17850
NZ_PYKE01000263.1	Protein Homology	CDS	31908	32582	.	+	0	ID=cds-WP_000157035.1;Parent=gene-C9F05_RS17355;Dbxref=GenBank:WP_000157035.1;Name=WP_000157035.1;Ontology_term=GO:0032506,GO:0042834,GO:0030428;gbkey=CDS;gene=dedD;go_component=cell septum|0030428||IEA;go_function=peptidoglycan binding|0042834||IEA;go_process=cytokinetic process|0032506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461306.1;locus_tag=C9F05_RS17355;product=cell division protein DedD;protein_id=WP_000157035.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	32893	33381	.	+	.	ID=gene-C9F05_RS17360;Name=cvpA;gbkey=Gene;gene=cvpA;gene_biotype=protein_coding;locus_tag=C9F05_RS17360;old_locus_tag=C9F05_17855
NZ_PYKE01000263.1	Protein Homology	CDS	32893	33381	.	+	0	ID=cds-WP_000262102.1;Parent=gene-C9F05_RS17360;Dbxref=GenBank:WP_000262102.1;Name=WP_000262102.1;gbkey=CDS;gene=cvpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461305.1;locus_tag=C9F05_RS17360;product=colicin V production protein;protein_id=WP_000262102.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	33419	34936	.	+	.	ID=gene-C9F05_RS17365;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=C9F05_RS17365;old_locus_tag=C9F05_17860
NZ_PYKE01000263.1	Protein Homology	CDS	33419	34936	.	+	0	ID=cds-WP_000334205.1;Parent=gene-C9F05_RS17365;Dbxref=GenBank:WP_000334205.1;Name=WP_000334205.1;Ontology_term=GO:0009113,GO:0004044;gbkey=CDS;gene=purF;go_function=amidophosphoribosyltransferase activity|0004044||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006820991.1;locus_tag=C9F05_RS17365;product=amidophosphoribosyltransferase;protein_id=WP_000334205.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	34972	36399	.	-	.	ID=gene-C9F05_RS17370;Name=C9F05_RS17370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17370;old_locus_tag=C9F05_17865
NZ_PYKE01000263.1	Protein Homology	CDS	34972	36399	.	-	0	ID=cds-WP_000168929.1;Parent=gene-C9F05_RS17370;Dbxref=GenBank:WP_000168929.1;Name=WP_000168929.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461303.1;locus_tag=C9F05_RS17370;product=sigma-54 interaction domain-containing protein;protein_id=WP_000168929.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	36610	38007	.	+	.	ID=gene-C9F05_RS17375;Name=C9F05_RS17375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17375;old_locus_tag=C9F05_17870
NZ_PYKE01000263.1	Protein Homology	CDS	36610	38007	.	+	0	ID=cds-WP_000132306.1;Parent=gene-C9F05_RS17375;Dbxref=GenBank:WP_000132306.1;Name=WP_000132306.1;Ontology_term=GO:0016831,GO:0030170;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461302.1;locus_tag=C9F05_RS17375;product=diaminopimelate decarboxylase family protein;protein_id=WP_000132306.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	38098	39519	.	+	.	ID=gene-C9F05_RS17380;Name=C9F05_RS17380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17380;old_locus_tag=C9F05_17875
NZ_PYKE01000263.1	Protein Homology	CDS	38098	39519	.	+	0	ID=cds-WP_000072512.1;Parent=gene-C9F05_RS17380;Dbxref=GenBank:WP_000072512.1;Name=WP_000072512.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461301.1;locus_tag=C9F05_RS17380;product=APC family permease;protein_id=WP_000072512.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	39521	40624	.	+	.	ID=gene-C9F05_RS17385;Name=C9F05_RS17385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17385;old_locus_tag=C9F05_17880
NZ_PYKE01000263.1	Protein Homology	CDS	39521	40624	.	+	0	ID=cds-WP_135370503.1;Parent=gene-C9F05_RS17385;Dbxref=GenBank:WP_135370503.1;Name=WP_135370503.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461300.1;locus_tag=C9F05_RS17385;product=alanine/ornithine racemase family PLP-dependent enzyme;protein_id=WP_135370503.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	40688	42094	.	+	.	ID=gene-C9F05_RS17390;Name=C9F05_RS17390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17390;old_locus_tag=C9F05_17885
NZ_PYKE01000263.1	Protein Homology	CDS	40688	42094	.	+	0	ID=cds-WP_135370504.1;Parent=gene-C9F05_RS17390;Dbxref=GenBank:WP_135370504.1;Name=WP_135370504.1;Ontology_term=GO:0003333,GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transmembrane transport|0003333||IEA,amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461299.1;locus_tag=C9F05_RS17390;product=amino acid permease;protein_id=WP_135370504.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	42121	42690	.	+	.	ID=gene-C9F05_RS17395;Name=C9F05_RS17395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17395;old_locus_tag=C9F05_17890
NZ_PYKE01000263.1	Protein Homology	CDS	42121	42690	.	+	0	ID=cds-WP_000825682.1;Parent=gene-C9F05_RS17395;Dbxref=GenBank:WP_000825682.1;Name=WP_000825682.1;Ontology_term=GO:0010181,GO:0016831,GO:0106141;gbkey=CDS;go_function=FMN binding|0010181||IEA,carboxy-lyase activity|0016831||IEA,flavin prenyltransferase activity|0106141||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461298.1;locus_tag=C9F05_RS17395;product=UbiX family flavin prenyltransferase;protein_id=WP_000825682.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	42979	43761	.	+	.	ID=gene-C9F05_RS17405;Name=argT;gbkey=Gene;gene=argT;gene_biotype=protein_coding;locus_tag=C9F05_RS17405;old_locus_tag=C9F05_17900
NZ_PYKE01000263.1	Protein Homology	CDS	42979	43761	.	+	0	ID=cds-WP_000754423.1;Parent=gene-C9F05_RS17405;Dbxref=GenBank:WP_000754423.1;Name=WP_000754423.1;gbkey=CDS;gene=argT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461297.1;locus_tag=C9F05_RS17405;product=lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT;protein_id=WP_000754423.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	43999	44781	.	+	.	ID=gene-C9F05_RS17410;Name=hisJ;gbkey=Gene;gene=hisJ;gene_biotype=protein_coding;locus_tag=C9F05_RS17410;old_locus_tag=C9F05_17905
NZ_PYKE01000263.1	Protein Homology	CDS	43999	44781	.	+	0	ID=cds-WP_000731868.1;Parent=gene-C9F05_RS17410;Dbxref=GenBank:WP_000731868.1;Name=WP_000731868.1;gbkey=CDS;gene=hisJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461296.1;locus_tag=C9F05_RS17410;product=histidine ABC transporter substrate-binding protein HisJ;protein_id=WP_000731868.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	44962	45648	.	+	.	ID=gene-C9F05_RS17415;Name=C9F05_RS17415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17415;old_locus_tag=C9F05_17910
NZ_PYKE01000263.1	Protein Homology	CDS	44962	45648	.	+	0	ID=cds-WP_000965498.1;Parent=gene-C9F05_RS17415;Dbxref=GenBank:WP_000965498.1;Name=WP_000965498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012124147.1;locus_tag=C9F05_RS17415;product=histidine ABC transporter permease HisQ;protein_id=WP_000965498.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	45645	46352	.	+	.	ID=gene-C9F05_RS17420;Name=hisM;gbkey=Gene;gene=hisM;gene_biotype=protein_coding;locus_tag=C9F05_RS17420;old_locus_tag=C9F05_17915
NZ_PYKE01000263.1	Protein Homology	CDS	45645	46352	.	+	0	ID=cds-WP_000569771.1;Parent=gene-C9F05_RS17420;Dbxref=GenBank:WP_000569771.1;Name=WP_000569771.1;gbkey=CDS;gene=hisM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461294.1;locus_tag=C9F05_RS17420;product=histidine ABC transporter permease HisM;protein_id=WP_000569771.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	46366	47139	.	+	.	ID=gene-C9F05_RS17425;Name=hisP;gbkey=Gene;gene=hisP;gene_biotype=protein_coding;locus_tag=C9F05_RS17425;old_locus_tag=C9F05_17920
NZ_PYKE01000263.1	Protein Homology	CDS	46366	47139	.	+	0	ID=cds-WP_001293591.1;Parent=gene-C9F05_RS17425;Dbxref=GenBank:WP_001293591.1;Name=WP_001293591.1;gbkey=CDS;gene=hisP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311217.1;locus_tag=C9F05_RS17425;product=histidine ABC transporter ATP-binding protein HisP;protein_id=WP_001293591.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	47191	48084	.	-	.	ID=gene-C9F05_RS17430;Name=C9F05_RS17430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17430;old_locus_tag=C9F05_17925
NZ_PYKE01000263.1	Protein Homology	CDS	47191	48084	.	-	0	ID=cds-WP_001166274.1;Parent=gene-C9F05_RS17430;Dbxref=GenBank:WP_001166274.1;Name=WP_001166274.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461292.1;locus_tag=C9F05_RS17430;product=TIGR01777 family oxidoreductase;protein_id=WP_001166274.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	48210	48857	.	-	.	ID=gene-C9F05_RS17435;Name=yfcG;gbkey=Gene;gene=yfcG;gene_biotype=protein_coding;locus_tag=C9F05_RS17435;old_locus_tag=C9F05_17930
NZ_PYKE01000263.1	Protein Homology	CDS	48210	48857	.	-	0	ID=cds-WP_000566562.1;Parent=gene-C9F05_RS17435;Dbxref=GenBank:WP_000566562.1;Name=WP_000566562.1;gbkey=CDS;gene=yfcG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461291.1;locus_tag=C9F05_RS17435;product=GSH-dependent disulfide bond oxidoreductase;protein_id=WP_000566562.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	49000	49644	.	+	.	ID=gene-C9F05_RS17440;Name=yfcF;gbkey=Gene;gene=yfcF;gene_biotype=protein_coding;locus_tag=C9F05_RS17440;old_locus_tag=C9F05_17935
NZ_PYKE01000263.1	Protein Homology	CDS	49000	49644	.	+	0	ID=cds-WP_000043010.1;Parent=gene-C9F05_RS17440;Dbxref=GenBank:WP_000043010.1;Name=WP_000043010.1;Ontology_term=GO:0006749;gbkey=CDS;gene=yfcF;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461290.1;locus_tag=C9F05_RS17440;product=glutathione transferase;protein_id=WP_000043010.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	49700	50251	.	+	.	ID=gene-C9F05_RS17445;Name=yfcE;gbkey=Gene;gene=yfcE;gene_biotype=protein_coding;locus_tag=C9F05_RS17445;old_locus_tag=C9F05_17940
NZ_PYKE01000263.1	Protein Homology	CDS	49700	50251	.	+	0	ID=cds-WP_000772458.1;Parent=gene-C9F05_RS17445;Dbxref=GenBank:WP_000772458.1;Name=WP_000772458.1;gbkey=CDS;gene=yfcE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461289.1;locus_tag=C9F05_RS17445;product=phosphodiesterase;protein_id=WP_000772458.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	50308	50862	.	+	.	ID=gene-C9F05_RS17450;Name=yfcD;gbkey=Gene;gene=yfcD;gene_biotype=protein_coding;locus_tag=C9F05_RS17450;old_locus_tag=C9F05_17945
NZ_PYKE01000263.1	Protein Homology	CDS	50308	50862	.	+	0	ID=cds-WP_000230215.1;Parent=gene-C9F05_RS17450;Dbxref=GenBank:WP_000230215.1;Name=WP_000230215.1;Ontology_term=GO:0016817;gbkey=CDS;gene=yfcD;go_function=hydrolase activity%2C acting on acid anhydrides|0016817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461288.1;locus_tag=C9F05_RS17450;product=NUDIX hydrolase YfcD;protein_id=WP_000230215.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	50868	51887	.	-	.	ID=gene-C9F05_RS17455;Name=C9F05_RS17455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17455;old_locus_tag=C9F05_17950
NZ_PYKE01000263.1	Protein Homology	CDS	50868	51887	.	-	0	ID=cds-WP_000026949.1;Parent=gene-C9F05_RS17455;Dbxref=GenBank:WP_000026949.1;Name=WP_000026949.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461287.1;locus_tag=C9F05_RS17455;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000026949.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	52140	52583	.	+	.	ID=gene-C9F05_RS17465;Name=C9F05_RS17465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17465;old_locus_tag=C9F05_17960
NZ_PYKE01000263.1	Protein Homology	CDS	52140	52583	.	+	0	ID=cds-WP_000901809.1;Parent=gene-C9F05_RS17465;Dbxref=GenBank:WP_000901809.1;Name=WP_000901809.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461286.1;locus_tag=C9F05_RS17465;product=PTS sugar transporter subunit IIA;protein_id=WP_000901809.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	52664	52936	.	+	.	ID=gene-C9F05_RS17470;Name=C9F05_RS17470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17470;old_locus_tag=C9F05_17965
NZ_PYKE01000263.1	Protein Homology	CDS	52664	52936	.	+	0	ID=cds-WP_000699818.1;Parent=gene-C9F05_RS17470;Dbxref=GenBank:WP_000699818.1;Name=WP_000699818.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461285.1;locus_tag=C9F05_RS17470;product=PTS sugar transporter subunit IIB;protein_id=WP_000699818.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	52957	54348	.	+	.	ID=gene-C9F05_RS17475;Name=C9F05_RS17475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17475;old_locus_tag=C9F05_17970
NZ_PYKE01000263.1	Protein Homology	CDS	52957	54348	.	+	0	ID=cds-WP_001522266.1;Parent=gene-C9F05_RS17475;Dbxref=GenBank:WP_001522266.1;Name=WP_001522266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461284.3;locus_tag=C9F05_RS17475;product=PTS ascorbate transporter subunit IIC;protein_id=WP_001522266.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	54345	55175	.	+	.	ID=gene-C9F05_RS17480;Name=C9F05_RS17480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17480;old_locus_tag=C9F05_17975
NZ_PYKE01000263.1	Protein Homology	CDS	54345	55175	.	+	0	ID=cds-WP_001103267.1;Parent=gene-C9F05_RS17480;Dbxref=GenBank:WP_001103267.1;Name=WP_001103267.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461283.1;locus_tag=C9F05_RS17480;product=transketolase;protein_id=WP_001103267.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	55168	56121	.	+	.	ID=gene-C9F05_RS17485;Name=C9F05_RS17485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17485;old_locus_tag=C9F05_17980
NZ_PYKE01000263.1	Protein Homology	CDS	55168	56121	.	+	0	ID=cds-WP_000593035.1;Parent=gene-C9F05_RS17485;Dbxref=GenBank:WP_000593035.1;Name=WP_000593035.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461282.1;locus_tag=C9F05_RS17485;product=transketolase family protein;protein_id=WP_000593035.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	56170	57690	.	-	.	ID=gene-C9F05_RS17490;Name=yfcC;gbkey=Gene;gene=yfcC;gene_biotype=protein_coding;locus_tag=C9F05_RS17490;old_locus_tag=C9F05_17985
NZ_PYKE01000263.1	Protein Homology	CDS	56170	57690	.	-	0	ID=cds-WP_000117931.1;Parent=gene-C9F05_RS17490;Dbxref=GenBank:WP_000117931.1;Name=WP_000117931.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yfcC;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461281.1;locus_tag=C9F05_RS17490;product=putative basic amino acid antiporter YfcC;protein_id=WP_000117931.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	57908	60052	.	-	.	ID=gene-C9F05_RS17495;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=C9F05_RS17495;old_locus_tag=C9F05_17990
NZ_PYKE01000263.1	Protein Homology	CDS	57908	60052	.	-	0	ID=cds-WP_000086692.1;Parent=gene-C9F05_RS17495;Dbxref=GenBank:WP_000086692.1;Name=WP_000086692.1;Ontology_term=GO:0016407;gbkey=CDS;gene=pta;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461280.1;locus_tag=C9F05_RS17495;product=phosphate acetyltransferase;protein_id=WP_000086692.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	60129	61331	.	-	.	ID=gene-C9F05_RS17500;Name=ackA;gbkey=Gene;gene=ackA;gene_biotype=protein_coding;locus_tag=C9F05_RS17500;old_locus_tag=C9F05_17995
NZ_PYKE01000263.1	Protein Homology	CDS	60129	61331	.	-	0	ID=cds-WP_000095692.1;Parent=gene-C9F05_RS17500;Dbxref=GenBank:WP_000095692.1;Name=WP_000095692.1;gbkey=CDS;gene=ackA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129491.1;locus_tag=C9F05_RS17500;product=acetate kinase;protein_id=WP_000095692.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	61671	62126	.	+	.	ID=gene-C9F05_RS17510;Name=yfbV;gbkey=Gene;gene=yfbV;gene_biotype=protein_coding;locus_tag=C9F05_RS17510;old_locus_tag=C9F05_18000
NZ_PYKE01000263.1	Protein Homology	CDS	61671	62126	.	+	0	ID=cds-WP_000106617.1;Parent=gene-C9F05_RS17510;Dbxref=GenBank:WP_000106617.1;Name=WP_000106617.1;gbkey=CDS;gene=yfbV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129545.1;locus_tag=C9F05_RS17510;product=terminus macrodomain insulation protein YfbV;protein_id=WP_000106617.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	62209	62703	.	+	.	ID=gene-C9F05_RS17515;Name=C9F05_RS17515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17515;old_locus_tag=C9F05_18005
NZ_PYKE01000263.1	Protein Homology	CDS	62209	62703	.	+	0	ID=cds-WP_000426135.1;Parent=gene-C9F05_RS17515;Dbxref=GenBank:WP_000426135.1;Name=WP_000426135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007371080.1;locus_tag=C9F05_RS17515;product=YfbU family protein;protein_id=WP_000426135.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	62696	63373	.	+	.	ID=gene-C9F05_RS17520;Name=C9F05_RS17520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17520;old_locus_tag=C9F05_18010
NZ_PYKE01000263.1	Protein Homology	CDS	62696	63373	.	+	0	ID=cds-WP_001555201.1;Parent=gene-C9F05_RS17520;Dbxref=GenBank:WP_001555201.1;Name=WP_001555201.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461276.3;locus_tag=C9F05_RS17520;product=sugar phosphatase;protein_id=WP_001555201.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	63450	65276	.	+	.	ID=gene-C9F05_RS17525;Name=C9F05_RS17525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17525;old_locus_tag=C9F05_18015
NZ_PYKE01000263.1	Protein Homology	CDS	63450	65276	.	+	0	ID=cds-WP_001012856.1;Parent=gene-C9F05_RS17525;Dbxref=GenBank:WP_001012856.1;Name=WP_001012856.1;Ontology_term=GO:0008324;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461275.1;locus_tag=C9F05_RS17525;product=SLC13 family permease;protein_id=WP_001012856.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	65382	65981	.	-	.	ID=gene-C9F05_RS17530;Name=yfbR;gbkey=Gene;gene=yfbR;gene_biotype=protein_coding;locus_tag=C9F05_RS17530;old_locus_tag=C9F05_18020
NZ_PYKE01000263.1	Protein Homology	CDS	65382	65981	.	-	0	ID=cds-WP_000813882.1;Parent=gene-C9F05_RS17530;Dbxref=GenBank:WP_000813882.1;Name=WP_000813882.1;Ontology_term=GO:0002953;gbkey=CDS;gene=yfbR;go_function=5'-deoxynucleotidase activity|0002953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461274.1;locus_tag=C9F05_RS17530;product=5'-deoxynucleotidase;protein_id=WP_000813882.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	66075	67289	.	-	.	ID=gene-C9F05_RS17535;Name=alaA;gbkey=Gene;gene=alaA;gene_biotype=protein_coding;locus_tag=C9F05_RS17535;old_locus_tag=C9F05_18025
NZ_PYKE01000263.1	Protein Homology	CDS	66075	67289	.	-	0	ID=cds-WP_000074540.1;Parent=gene-C9F05_RS17535;Dbxref=GenBank:WP_000074540.1;Name=WP_000074540.1;gbkey=CDS;gene=alaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461273.1;locus_tag=C9F05_RS17535;product=alanine transaminase AlaA;protein_id=WP_000074540.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	68221	69159	.	+	.	ID=gene-C9F05_RS17545;Name=lrhA;gbkey=Gene;gene=lrhA;gene_biotype=protein_coding;locus_tag=C9F05_RS17545;old_locus_tag=C9F05_18035
NZ_PYKE01000263.1	Protein Homology	CDS	68221	69159	.	+	0	ID=cds-WP_000606288.1;Parent=gene-C9F05_RS17545;Dbxref=GenBank:WP_000606288.1;Name=WP_000606288.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=lrhA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461272.1;locus_tag=C9F05_RS17545;product=transcriptional regulator LrhA;protein_id=WP_000606288.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	69239	69391	.	+	.	ID=gene-C9F05_RS17550;Name=C9F05_RS17550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17550;old_locus_tag=C9F05_18040
NZ_PYKE01000263.1	Protein Homology	CDS	69239	69391	.	+	0	ID=cds-WP_001598667.1;Parent=gene-C9F05_RS17550;Dbxref=GenBank:WP_001598667.1;Name=WP_001598667.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461271.1;locus_tag=C9F05_RS17550;product=STM2329 family putative cytoplasmic protein;protein_id=WP_001598667.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	69786	70229	.	+	.	ID=gene-C9F05_RS17555;Name=nuoA;gbkey=Gene;gene=nuoA;gene_biotype=protein_coding;locus_tag=C9F05_RS17555;old_locus_tag=C9F05_18045
NZ_PYKE01000263.1	Protein Homology	CDS	69786	70229	.	+	0	ID=cds-WP_000062993.1;Parent=gene-C9F05_RS17555;Dbxref=GenBank:WP_000062993.1;Name=WP_000062993.1;gbkey=CDS;gene=nuoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461270.1;locus_tag=C9F05_RS17555;product=NADH-quinone oxidoreductase subunit NuoA;protein_id=WP_000062993.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	70245	70907	.	+	.	ID=gene-C9F05_RS17560;Name=nuoB;gbkey=Gene;gene=nuoB;gene_biotype=protein_coding;locus_tag=C9F05_RS17560;old_locus_tag=C9F05_18050
NZ_PYKE01000263.1	Protein Homology	CDS	70245	70907	.	+	0	ID=cds-WP_000386728.1;Parent=gene-C9F05_RS17560;Dbxref=GenBank:WP_000386728.1;Name=WP_000386728.1;gbkey=CDS;gene=nuoB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461269.1;locus_tag=C9F05_RS17560;product=NADH-quinone oxidoreductase subunit NuoB;protein_id=WP_000386728.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	70994	72796	.	+	.	ID=gene-C9F05_RS17565;Name=nuoC;gbkey=Gene;gene=nuoC;gene_biotype=protein_coding;locus_tag=C9F05_RS17565;old_locus_tag=C9F05_18055
NZ_PYKE01000263.1	Protein Homology	CDS	70994	72796	.	+	0	ID=cds-WP_000247855.1;Parent=gene-C9F05_RS17565;Dbxref=GenBank:WP_000247855.1;Name=WP_000247855.1;Ontology_term=GO:0048038,GO:0050136,GO:0051287,GO:0030964;gbkey=CDS;gene=nuoC;go_component=NADH dehydrogenase complex|0030964||IEA;go_function=quinone binding|0048038||IEA,NADH dehydrogenase (quinone) (non-electrogenic) activity|0050136||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461268.1;locus_tag=C9F05_RS17565;product=NADH-quinone oxidoreductase subunit C/D;protein_id=WP_000247855.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	72799	73299	.	+	.	ID=gene-C9F05_RS17570;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=C9F05_RS17570;old_locus_tag=C9F05_18060
NZ_PYKE01000263.1	Protein Homology	CDS	72799	73299	.	+	0	ID=cds-WP_000545038.1;Parent=gene-C9F05_RS17570;Dbxref=GenBank:WP_000545038.1;Name=WP_000545038.1;Ontology_term=GO:0016491;gbkey=CDS;gene=nuoE;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461267.1;locus_tag=C9F05_RS17570;product=NADH-quinone oxidoreductase subunit NuoE;protein_id=WP_000545038.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	73296	74633	.	+	.	ID=gene-C9F05_RS17575;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=C9F05_RS17575;old_locus_tag=C9F05_18065
NZ_PYKE01000263.1	Protein Homology	CDS	73296	74633	.	+	0	ID=cds-WP_000800048.1;Parent=gene-C9F05_RS17575;Dbxref=GenBank:WP_000800048.1;Name=WP_000800048.1;Ontology_term=GO:0008137,GO:0051539;gbkey=CDS;gene=nuoF;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461266.1;locus_tag=C9F05_RS17575;product=NADH-quinone oxidoreductase subunit NuoF;protein_id=WP_000800048.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	74664	77390	.	+	.	ID=gene-C9F05_RS17580;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=C9F05_RS17580;old_locus_tag=C9F05_18070
NZ_PYKE01000263.1	Protein Homology	CDS	74664	77390	.	+	0	ID=cds-WP_001518099.1;Parent=gene-C9F05_RS17580;Dbxref=GenBank:WP_001518099.1;Name=WP_001518099.1;Ontology_term=GO:0006120,GO:0050136,GO:0051536;gbkey=CDS;gene=nuoG;go_function=NADH dehydrogenase (quinone) (non-electrogenic) activity|0050136||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=mitochondrial electron transport%2C NADH to ubiquinone|0006120||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311194.2;locus_tag=C9F05_RS17580;product=NADH-quinone oxidoreductase subunit NuoG;protein_id=WP_001518099.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	77387	78364	.	+	.	ID=gene-C9F05_RS17585;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=C9F05_RS17585;old_locus_tag=C9F05_18075
NZ_PYKE01000263.1	Protein Homology	CDS	77387	78364	.	+	0	ID=cds-WP_000118515.1;Parent=gene-C9F05_RS17585;Dbxref=GenBank:WP_000118515.1;Name=WP_000118515.1;gbkey=CDS;gene=nuoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015875065.1;locus_tag=C9F05_RS17585;product=NADH-quinone oxidoreductase subunit NuoH;protein_id=WP_000118515.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	78379	78921	.	+	.	ID=gene-C9F05_RS17590;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=C9F05_RS17590;old_locus_tag=C9F05_18080
NZ_PYKE01000263.1	Protein Homology	CDS	78379	78921	.	+	0	ID=cds-WP_000172747.1;Parent=gene-C9F05_RS17590;Dbxref=GenBank:WP_000172747.1;Name=WP_000172747.1;Ontology_term=GO:0016651,GO:0051539,GO:0016020;gbkey=CDS;gene=nuoI;go_component=membrane|0016020||IEA;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015959823.1;locus_tag=C9F05_RS17590;product=NADH-quinone oxidoreductase subunit NuoI;protein_id=WP_000172747.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	78932	79486	.	+	.	ID=gene-C9F05_RS17595;Name=nuoJ;gbkey=Gene;gene=nuoJ;gene_biotype=protein_coding;locus_tag=C9F05_RS17595;old_locus_tag=C9F05_18085
NZ_PYKE01000263.1	Protein Homology	CDS	78932	79486	.	+	0	ID=cds-WP_000393524.1;Parent=gene-C9F05_RS17595;Dbxref=GenBank:WP_000393524.1;Name=WP_000393524.1;Ontology_term=GO:0008137;gbkey=CDS;gene=nuoJ;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461262.1;locus_tag=C9F05_RS17595;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_000393524.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	79483	79785	.	+	.	ID=gene-C9F05_RS17600;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=C9F05_RS17600;old_locus_tag=C9F05_18090
NZ_PYKE01000263.1	Protein Homology	CDS	79483	79785	.	+	0	ID=cds-WP_000612687.1;Parent=gene-C9F05_RS17600;Dbxref=GenBank:WP_000612687.1;Name=WP_000612687.1;Ontology_term=GO:0042773,GO:0016651;gbkey=CDS;gene=nuoK;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006683663.1;locus_tag=C9F05_RS17600;product=NADH-quinone oxidoreductase subunit NuoK;protein_id=WP_000612687.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	79782	81623	.	+	.	ID=gene-C9F05_RS17605;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=C9F05_RS17605;old_locus_tag=C9F05_18095
NZ_PYKE01000263.1	Protein Homology	CDS	79782	81623	.	+	0	ID=cds-WP_001056582.1;Parent=gene-C9F05_RS17605;Dbxref=GenBank:WP_001056582.1;Name=WP_001056582.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoL;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129466.1;locus_tag=C9F05_RS17605;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_001056582.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	81700	83229	.	+	.	ID=gene-C9F05_RS17610;Name=nuoM;gbkey=Gene;gene=nuoM;gene_biotype=protein_coding;locus_tag=C9F05_RS17610;old_locus_tag=C9F05_18100
NZ_PYKE01000263.1	Protein Homology	CDS	81700	83229	.	+	0	ID=cds-WP_000926431.1;Parent=gene-C9F05_RS17610;Dbxref=GenBank:WP_000926431.1;Name=WP_000926431.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoM;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129465.1;locus_tag=C9F05_RS17610;product=NADH-quinone oxidoreductase subunit M;protein_id=WP_000926431.1;transl_table=11
NZ_PYKE01000263.1	RefSeq	gene	83236	84693	.	+	.	ID=gene-C9F05_RS17615;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=C9F05_RS17615;old_locus_tag=C9F05_18105
NZ_PYKE01000263.1	Protein Homology	CDS	83236	84693	.	+	0	ID=cds-WP_000156667.1;Parent=gene-C9F05_RS17615;Dbxref=GenBank:WP_000156667.1;Name=WP_000156667.1;Ontology_term=GO:0008137;gbkey=CDS;gene=nuoN;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416779.2;locus_tag=C9F05_RS17615;product=NADH-quinone oxidoreductase subunit NuoN;protein_id=WP_000156667.1;transl_table=11
##sequence-region NZ_PYKE01000150.1 1 8085
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000150.1	RefSeq	region	1	8085	.	+	.	ID=NZ_PYKE01000150.1:1..8085;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000150.1	RefSeq	gene	445	1641	.	-	.	ID=gene-C9F05_RS10715;Name=hemY;gbkey=Gene;gene=hemY;gene_biotype=protein_coding;locus_tag=C9F05_RS10715;old_locus_tag=C9F05_10980
NZ_PYKE01000150.1	Protein Homology	CDS	445	1641	.	-	0	ID=cds-WP_023602562.1;Parent=gene-C9F05_RS10715;Dbxref=GenBank:WP_023602562.1;Name=WP_023602562.1;Ontology_term=GO:0042168,GO:0005515,GO:0016020;gbkey=CDS;gene=hemY;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA;go_process=heme metabolic process|0042168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312759.1;locus_tag=C9F05_RS10715;product=protoheme IX biogenesis protein HemY;protein_id=WP_023602562.1;transl_table=11
NZ_PYKE01000150.1	RefSeq	gene	1644	2813	.	-	.	ID=gene-C9F05_RS10720;Name=hemX;gbkey=Gene;gene=hemX;gene_biotype=protein_coding;locus_tag=C9F05_RS10720;old_locus_tag=C9F05_10985
NZ_PYKE01000150.1	Protein Homology	CDS	1644	2813	.	-	0	ID=cds-WP_000138962.1;Parent=gene-C9F05_RS10720;Dbxref=GenBank:WP_000138962.1;Name=WP_000138962.1;gbkey=CDS;gene=hemX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462822.1;locus_tag=C9F05_RS10720;product=uroporphyrinogen-III C-methyltransferase;protein_id=WP_000138962.1;transl_table=11
NZ_PYKE01000150.1	RefSeq	gene	2835	3575	.	-	.	ID=gene-C9F05_RS10725;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=C9F05_RS10725;old_locus_tag=C9F05_10990
NZ_PYKE01000150.1	Protein Homology	CDS	2835	3575	.	-	0	ID=cds-WP_000025498.1;Parent=gene-C9F05_RS10725;Dbxref=GenBank:WP_000025498.1;Name=WP_000025498.1;Ontology_term=GO:0006780,GO:0004852;gbkey=CDS;gene=hemD;go_function=uroporphyrinogen-III synthase activity|0004852||IEA;go_process=uroporphyrinogen III biosynthetic process|0006780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462823.1;locus_tag=C9F05_RS10725;product=uroporphyrinogen-III synthase;protein_id=WP_000025498.1;transl_table=11
NZ_PYKE01000150.1	RefSeq	gene	3572	4513	.	-	.	ID=gene-C9F05_RS10730;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=C9F05_RS10730;old_locus_tag=C9F05_10995
NZ_PYKE01000150.1	Protein Homology	CDS	3572	4513	.	-	0	ID=cds-WP_001521319.1;Parent=gene-C9F05_RS10730;Dbxref=GenBank:WP_001521319.1;Name=WP_001521319.1;Ontology_term=GO:0033014,GO:0004418;gbkey=CDS;gene=hemC;go_function=hydroxymethylbilane synthase activity|0004418||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026260.1;locus_tag=C9F05_RS10730;product=hydroxymethylbilane synthase;protein_id=WP_001521319.1;transl_table=11
NZ_PYKE01000150.1	RefSeq	gene	4890	7436	.	+	.	ID=gene-C9F05_RS10735;Name=cyaA;gbkey=Gene;gene=cyaA;gene_biotype=protein_coding;locus_tag=C9F05_RS10735;old_locus_tag=C9F05_11000
NZ_PYKE01000150.1	Protein Homology	CDS	4890	7436	.	+	0	ID=cds-WP_000281718.1;Parent=gene-C9F05_RS10735;Dbxref=GenBank:WP_000281718.1;Name=WP_000281718.1;Ontology_term=GO:0006171,GO:0004016;gbkey=CDS;gene=cyaA;go_function=adenylate cyclase activity|0004016||IEA;go_process=cAMP biosynthetic process|0006171||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462825.1;locus_tag=C9F05_RS10735;product=class I adenylate cyclase;protein_id=WP_000281718.1;transl_table=11
NZ_PYKE01000150.1	RefSeq	gene	7544	7900	.	+	.	ID=gene-C9F05_RS10740;Name=C9F05_RS10740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10740;old_locus_tag=C9F05_11005
NZ_PYKE01000150.1	Protein Homology	CDS	7544	7900	.	+	0	ID=cds-WP_039590844.1;Parent=gene-C9F05_RS10740;Dbxref=GenBank:WP_039590844.1;Name=WP_039590844.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462826.1;locus_tag=C9F05_RS10740;product=hypothetical protein;protein_id=WP_039590844.1;transl_table=11
##sequence-region NZ_PYKE01000194.1 1 8032
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000194.1	RefSeq	region	1	8032	.	+	.	ID=NZ_PYKE01000194.1:1..8032;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000194.1	RefSeq	pseudogene	210	341	.	-	.	ID=gene-C9F05_RS12680;Name=C9F05_RS12680;end_range=341,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS12680;old_locus_tag=C9F05_13050;partial=true;pseudo=true;start_range=.,210
NZ_PYKE01000194.1	Protein Homology	CDS	210	341	.	-	0	ID=cds-C9F05_RS12680;Parent=gene-C9F05_RS12680;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=341,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611496.1;locus_tag=C9F05_RS12680;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,210;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	411	1427	.	+	.	ID=gene-C9F05_RS12685;Name=C9F05_RS12685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12685;old_locus_tag=C9F05_13055
NZ_PYKE01000194.1	Protein Homology	CDS	411	1427	.	+	0	ID=cds-WP_135370334.1;Parent=gene-C9F05_RS12685;Dbxref=GenBank:WP_135370334.1;Name=WP_135370334.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032444102.1;locus_tag=C9F05_RS12685;product=IS110-like element ISSaen1 family transposase;protein_id=WP_135370334.1;transl_table=11
NZ_PYKE01000194.1	RefSeq	pseudogene	1653	1769	.	-	.	ID=gene-C9F05_RS12690;Name=C9F05_RS12690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS12690;old_locus_tag=C9F05_13060;partial=true;pseudo=true;start_range=.,1653
NZ_PYKE01000194.1	Protein Homology	CDS	1653	1769	.	-	0	ID=cds-C9F05_RS12690;Parent=gene-C9F05_RS12690;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611505.1;locus_tag=C9F05_RS12690;partial=true;product=transposase;pseudo=true;start_range=.,1653;transl_table=11
NZ_PYKE01000194.1	RefSeq	pseudogene	1852	1950	.	-	.	ID=gene-C9F05_RS23850;Name=C9F05_RS23850;end_range=1950,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23850;old_locus_tag=C9F05_13065;partial=true;pseudo=true;start_range=.,1852
NZ_PYKE01000194.1	Protein Homology	CDS	1852	1950	.	-	0	ID=cds-C9F05_RS23850;Parent=gene-C9F05_RS23850;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1950,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001607533.1;locus_tag=C9F05_RS23850;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,1852;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	2198	2285	.	-	.	ID=gene-C9F05_RS12700;Name=C9F05_RS12700;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS12700;old_locus_tag=C9F05_13070
NZ_PYKE01000194.1	tRNAscan-SE	tRNA	2198	2285	.	-	.	ID=rna-C9F05_RS12700;Parent=gene-C9F05_RS12700;anticodon=(pos:complement(2249..2251));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS12700;product=tRNA-Ser
NZ_PYKE01000194.1	tRNAscan-SE	exon	2198	2285	.	-	.	ID=exon-C9F05_RS12700-1;Parent=rna-C9F05_RS12700;anticodon=(pos:complement(2249..2251));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS12700;product=tRNA-Ser
NZ_PYKE01000194.1	RefSeq	gene	2521	3459	.	+	.	ID=gene-C9F05_RS12710;Name=ghrA;gbkey=Gene;gene=ghrA;gene_biotype=protein_coding;locus_tag=C9F05_RS12710;old_locus_tag=C9F05_13080
NZ_PYKE01000194.1	Protein Homology	CDS	2521	3459	.	+	0	ID=cds-WP_000402552.1;Parent=gene-C9F05_RS12710;Dbxref=GenBank:WP_000402552.1;Name=WP_000402552.1;Ontology_term=GO:0016618,GO:0030267,GO:0051287;gbkey=CDS;gene=ghrA;go_function=hydroxypyruvate reductase [NAD(P)H] activity|0016618||IEA,glyoxylate reductase (NADPH) activity|0030267||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460106.1;locus_tag=C9F05_RS12710;product=glyoxylate/hydroxypyruvate reductase GhrA;protein_id=WP_000402552.1;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	3544	4281	.	+	.	ID=gene-C9F05_RS12715;Name=C9F05_RS12715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12715;old_locus_tag=C9F05_13085
NZ_PYKE01000194.1	Protein Homology	CDS	3544	4281	.	+	0	ID=cds-WP_000283643.1;Parent=gene-C9F05_RS12715;Dbxref=GenBank:WP_000283643.1;Name=WP_000283643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460107.1;locus_tag=C9F05_RS12715;product=phosphatase;protein_id=WP_000283643.1;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	4305	4859	.	+	.	ID=gene-C9F05_RS12720;Name=C9F05_RS12720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12720;old_locus_tag=C9F05_13090
NZ_PYKE01000194.1	Protein Homology	CDS	4305	4859	.	+	0	ID=cds-WP_001001883.1;Parent=gene-C9F05_RS12720;Dbxref=GenBank:WP_001001883.1;Name=WP_001001883.1;Ontology_term=GO:0006457;gbkey=CDS;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460108.1;locus_tag=C9F05_RS12720;product=TorD/DmsD family molecular chaperone;protein_id=WP_001001883.1;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	4960	5442	.	+	.	ID=gene-C9F05_RS12725;Name=C9F05_RS12725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12725;old_locus_tag=C9F05_13095
NZ_PYKE01000194.1	Protein Homology	CDS	4960	5442	.	+	0	ID=cds-WP_001546652.1;Parent=gene-C9F05_RS12725;Dbxref=GenBank:WP_001546652.1;Name=WP_001546652.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675581.1;locus_tag=C9F05_RS12725;product=DUF1097 domain-containing protein;protein_id=WP_001546652.1;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	5481	6314	.	-	.	ID=gene-C9F05_RS12730;Name=csgG;gbkey=Gene;gene=csgG;gene_biotype=protein_coding;locus_tag=C9F05_RS12730;old_locus_tag=C9F05_13100
NZ_PYKE01000194.1	Protein Homology	CDS	5481	6314	.	-	0	ID=cds-WP_001137620.1;Parent=gene-C9F05_RS12730;Dbxref=GenBank:WP_001137620.1;Name=WP_001137620.1;gbkey=CDS;gene=csgG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460110.1;locus_tag=C9F05_RS12730;product=curli production assembly/transport protein CsgG;protein_id=WP_001137620.1;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	6341	6757	.	-	.	ID=gene-C9F05_RS12735;Name=csgF;gbkey=Gene;gene=csgF;gene_biotype=protein_coding;locus_tag=C9F05_RS12735;old_locus_tag=C9F05_13105
NZ_PYKE01000194.1	Protein Homology	CDS	6341	6757	.	-	0	ID=cds-WP_001264073.1;Parent=gene-C9F05_RS12735;Dbxref=GenBank:WP_001264073.1;Name=WP_001264073.1;gbkey=CDS;gene=csgF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460111.1;locus_tag=C9F05_RS12735;product=curli production assembly/transport protein CsgF;protein_id=WP_001264073.1;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	6784	7179	.	-	.	ID=gene-C9F05_RS12740;Name=csgE;gbkey=Gene;gene=csgE;gene_biotype=protein_coding;locus_tag=C9F05_RS12740;old_locus_tag=C9F05_13110
NZ_PYKE01000194.1	Protein Homology	CDS	6784	7179	.	-	0	ID=cds-WP_000833307.1;Parent=gene-C9F05_RS12740;Dbxref=GenBank:WP_000833307.1;Name=WP_000833307.1;gbkey=CDS;gene=csgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460112.1;locus_tag=C9F05_RS12740;product=curli production assembly/transport protein CsgE;protein_id=WP_000833307.1;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	7184	7834	.	-	.	ID=gene-C9F05_RS12745;Name=csgD;gbkey=Gene;gene=csgD;gene_biotype=protein_coding;locus_tag=C9F05_RS12745;old_locus_tag=C9F05_13115
NZ_PYKE01000194.1	Protein Homology	CDS	7184	7834	.	-	0	ID=cds-WP_000481517.1;Parent=gene-C9F05_RS12745;Dbxref=GenBank:WP_000481517.1;Name=WP_000481517.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=csgD;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460113.1;locus_tag=C9F05_RS12745;product=biofilm master transcriptional regulator CsgD;protein_id=WP_000481517.1;transl_table=11
NZ_PYKE01000194.1	RefSeq	gene	7853	8032	.	-	.	ID=gene-C9F05_RS23685;Name=C9F05_RS23685;end_range=8032,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23685;partial=true
NZ_PYKE01000194.1	GeneMarkS-2+	CDS	7853	8032	.	-	0	ID=cds-WP_217810224.1;Parent=gene-C9F05_RS23685;Dbxref=GenBank:WP_217810224.1;Name=WP_217810224.1;end_range=8032,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23685;partial=true;product=hypothetical protein;protein_id=WP_217810224.1;transl_table=11
##sequence-region NZ_PYKE01000289.1 1 7982
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000289.1	RefSeq	region	1	7982	.	+	.	ID=NZ_PYKE01000289.1:1..7982;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000289.1	RefSeq	gene	51	158	.	-	.	ID=gene-C9F05_RS19135;Name=yoaI;gbkey=Gene;gene=yoaI;gene_biotype=protein_coding;locus_tag=C9F05_RS19135;old_locus_tag=C9F05_19670
NZ_PYKE01000289.1	Protein Homology	CDS	51	158	.	-	0	ID=cds-WP_000272239.1;Parent=gene-C9F05_RS19135;Dbxref=GenBank:WP_000272239.1;Name=WP_000272239.1;gbkey=CDS;gene=yoaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460247.1;locus_tag=C9F05_RS19135;product=small membrane protein YoaI;protein_id=WP_000272239.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	364	810	.	+	.	ID=gene-C9F05_RS19140;Name=C9F05_RS19140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19140;old_locus_tag=C9F05_19675
NZ_PYKE01000289.1	Protein Homology	CDS	364	810	.	+	0	ID=cds-WP_000460698.1;Parent=gene-C9F05_RS19140;Dbxref=GenBank:WP_000460698.1;Name=WP_000460698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460246.2;locus_tag=C9F05_RS19140;product=DUF441 domain-containing protein;protein_id=WP_000460698.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	790	1584	.	-	.	ID=gene-C9F05_RS19145;Name=C9F05_RS19145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19145;old_locus_tag=C9F05_19680
NZ_PYKE01000289.1	Protein Homology	CDS	790	1584	.	-	0	ID=cds-WP_000579793.1;Parent=gene-C9F05_RS19145;Dbxref=GenBank:WP_000579793.1;Name=WP_000579793.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460245.1;locus_tag=C9F05_RS19145;product=AraC family transcriptional regulator;protein_id=WP_000579793.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	1685	2869	.	+	.	ID=gene-C9F05_RS19150;Name=C9F05_RS19150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19150;old_locus_tag=C9F05_19685
NZ_PYKE01000289.1	Protein Homology	CDS	1685	2869	.	+	0	ID=cds-WP_135370551.1;Parent=gene-C9F05_RS19150;Dbxref=GenBank:WP_135370551.1;Name=WP_135370551.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460244.1;locus_tag=C9F05_RS19150;product=CynX/NimT family MFS transporter;protein_id=WP_135370551.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	2988	3335	.	+	.	ID=gene-C9F05_RS19155;Name=C9F05_RS19155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19155;old_locus_tag=C9F05_19690
NZ_PYKE01000289.1	Protein Homology	CDS	2988	3335	.	+	0	ID=cds-WP_001222534.1;Parent=gene-C9F05_RS19155;Dbxref=GenBank:WP_001222534.1;Name=WP_001222534.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460243.1;locus_tag=C9F05_RS19155;product=DUF488 domain-containing protein;protein_id=WP_001222534.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	3321	3632	.	-	.	ID=gene-C9F05_RS19160;Name=C9F05_RS19160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19160;old_locus_tag=C9F05_19695
NZ_PYKE01000289.1	Protein Homology	CDS	3321	3632	.	-	0	ID=cds-WP_000487129.1;Parent=gene-C9F05_RS19160;Dbxref=GenBank:WP_000487129.1;Name=WP_000487129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460242.1;locus_tag=C9F05_RS19160;product=hypothetical protein;protein_id=WP_000487129.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	3701	3952	.	-	.	ID=gene-C9F05_RS19165;Name=C9F05_RS19165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19165;old_locus_tag=C9F05_19700
NZ_PYKE01000289.1	Protein Homology	CDS	3701	3952	.	-	0	ID=cds-WP_000673492.1;Parent=gene-C9F05_RS19165;Dbxref=GenBank:WP_000673492.1;Name=WP_000673492.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460241.1;locus_tag=C9F05_RS19165;product=putative hemolysin;protein_id=WP_000673492.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	4148	4246	.	+	.	ID=gene-C9F05_RS19170;Name=C9F05_RS19170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19170;old_locus_tag=C9F05_19705
NZ_PYKE01000289.1	Protein Homology	CDS	4148	4246	.	+	0	ID=cds-WP_001589065.1;Parent=gene-C9F05_RS19170;Dbxref=GenBank:WP_001589065.1;Name=WP_001589065.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791242.1;locus_tag=C9F05_RS19170;product=YoaK family small membrane protein;protein_id=WP_001589065.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	4385	4633	.	-	.	ID=gene-C9F05_RS19175;Name=C9F05_RS19175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19175;old_locus_tag=C9F05_19710
NZ_PYKE01000289.1	Protein Homology	CDS	4385	4633	.	-	0	ID=cds-WP_000512149.1;Parent=gene-C9F05_RS19175;Dbxref=GenBank:WP_000512149.1;Name=WP_000512149.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460240.1;locus_tag=C9F05_RS19175;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000512149.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	4947	5588	.	-	.	ID=gene-C9F05_RS19185;Name=C9F05_RS19185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19185;old_locus_tag=C9F05_19720
NZ_PYKE01000289.1	Protein Homology	CDS	4947	5588	.	-	0	ID=cds-WP_023203468.1;Parent=gene-C9F05_RS19185;Dbxref=GenBank:WP_023203468.1;Name=WP_023203468.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460239.1;locus_tag=C9F05_RS19185;product=nitric oxide reductase;protein_id=WP_023203468.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	5818	6000	.	-	.	ID=gene-C9F05_RS19190;Name=C9F05_RS19190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19190;old_locus_tag=C9F05_19725
NZ_PYKE01000289.1	Protein Homology	CDS	5818	6000	.	-	0	ID=cds-WP_000513733.1;Parent=gene-C9F05_RS19190;Dbxref=GenBank:WP_000513733.1;Name=WP_000513733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460238.1;locus_tag=C9F05_RS19190;product=DUF1869 domain-containing protein;protein_id=WP_000513733.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	6003	6365	.	-	.	ID=gene-C9F05_RS19195;Name=yeaR;gbkey=Gene;gene=yeaR;gene_biotype=protein_coding;locus_tag=C9F05_RS19195;old_locus_tag=C9F05_19730
NZ_PYKE01000289.1	Protein Homology	CDS	6003	6365	.	-	0	ID=cds-WP_001248993.1;Parent=gene-C9F05_RS19195;Dbxref=GenBank:WP_001248993.1;Name=WP_001248993.1;gbkey=CDS;gene=yeaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460237.1;locus_tag=C9F05_RS19195;product=DUF1971 domain-containing protein YeaR;protein_id=WP_001248993.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	6538	7176	.	-	.	ID=gene-C9F05_RS19200;Name=leuE;gbkey=Gene;gene=leuE;gene_biotype=protein_coding;locus_tag=C9F05_RS19200;old_locus_tag=C9F05_19740
NZ_PYKE01000289.1	Protein Homology	CDS	6538	7176	.	-	0	ID=cds-WP_000457190.1;Parent=gene-C9F05_RS19200;Dbxref=GenBank:WP_000457190.1;Name=WP_000457190.1;Ontology_term=GO:0006865;gbkey=CDS;gene=leuE;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460236.1;locus_tag=C9F05_RS19200;product=leucine efflux protein LeuE;protein_id=WP_000457190.1;transl_table=11
NZ_PYKE01000289.1	RefSeq	gene	7373	7918	.	-	.	ID=gene-C9F05_RS19205;Name=C9F05_RS19205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19205;old_locus_tag=C9F05_19745
NZ_PYKE01000289.1	Protein Homology	CDS	7373	7918	.	-	0	ID=cds-WP_039590693.1;Parent=gene-C9F05_RS19205;Dbxref=GenBank:WP_039590693.1;Name=WP_039590693.1;Ontology_term=GO:0046417;gbkey=CDS;go_process=chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460235.1;locus_tag=C9F05_RS19205;product=chorismate mutase;protein_id=WP_039590693.1;transl_table=11
##sequence-region NZ_PYKE01000220.1 1 36394
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000220.1	RefSeq	region	1	36394	.	+	.	ID=NZ_PYKE01000220.1:1..36394;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000220.1	RefSeq	gene	127	1398	.	-	.	ID=gene-C9F05_RS14510;Name=C9F05_RS14510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14510;old_locus_tag=C9F05_14925
NZ_PYKE01000220.1	Protein Homology	CDS	127	1398	.	-	0	ID=cds-WP_001033033.1;Parent=gene-C9F05_RS14510;Dbxref=GenBank:WP_001033033.1;Name=WP_001033033.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463375.1;locus_tag=C9F05_RS14510;product=DUF445 domain-containing protein;protein_id=WP_001033033.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	1485	2726	.	-	.	ID=gene-C9F05_RS14515;Name=mdtM;gbkey=Gene;gene=mdtM;gene_biotype=protein_coding;locus_tag=C9F05_RS14515;old_locus_tag=C9F05_14930
NZ_PYKE01000220.1	Protein Homology	CDS	1485	2726	.	-	0	ID=cds-WP_001188918.1;Parent=gene-C9F05_RS14515;Dbxref=GenBank:WP_001188918.1;Name=WP_001188918.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mdtM;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463376.1;locus_tag=C9F05_RS14515;product=multidrug efflux MFS transporter MdtM;protein_id=WP_001188918.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	3205	4170	.	+	.	ID=gene-C9F05_RS14520;Name=C9F05_RS14520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14520;old_locus_tag=C9F05_14935
NZ_PYKE01000220.1	Protein Homology	CDS	3205	4170	.	+	0	ID=cds-WP_000749991.1;Parent=gene-C9F05_RS14520;Dbxref=GenBank:WP_000749991.1;Name=WP_000749991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012548938.1;locus_tag=C9F05_RS14520;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_000749991.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	4351	5721	.	+	.	ID=gene-C9F05_RS14525;Name=C9F05_RS14525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14525;old_locus_tag=C9F05_14940
NZ_PYKE01000220.1	Protein Homology	CDS	4351	5721	.	+	0	ID=cds-WP_135370404.1;Parent=gene-C9F05_RS14525;Dbxref=GenBank:WP_135370404.1;Name=WP_135370404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463378.1;locus_tag=C9F05_RS14525;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_135370404.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	5816	5959	.	-	.	ID=gene-C9F05_RS14530;Name=C9F05_RS14530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14530;old_locus_tag=C9F05_14945
NZ_PYKE01000220.1	Protein Homology	CDS	5816	5959	.	-	0	ID=cds-WP_031605808.1;Parent=gene-C9F05_RS14530;Dbxref=GenBank:WP_031605808.1;Name=WP_031605808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463379.1;locus_tag=C9F05_RS14530;product=hypothetical protein;protein_id=WP_031605808.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	5926	6090	.	+	.	ID=gene-C9F05_RS14535;Name=yjiS;gbkey=Gene;gene=yjiS;gene_biotype=protein_coding;locus_tag=C9F05_RS14535;old_locus_tag=C9F05_14950
NZ_PYKE01000220.1	Protein Homology	CDS	5926	6090	.	+	0	ID=cds-WP_000397917.1;Parent=gene-C9F05_RS14535;Dbxref=GenBank:WP_000397917.1;Name=WP_000397917.1;gbkey=CDS;gene=yjiS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463380.1;locus_tag=C9F05_RS14535;product=DUF1127 domain-containing protein YjiS;protein_id=WP_000397917.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	6167	7087	.	-	.	ID=gene-C9F05_RS14540;Name=C9F05_RS14540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14540;old_locus_tag=C9F05_14955
NZ_PYKE01000220.1	Protein Homology	CDS	6167	7087	.	-	0	ID=cds-WP_115409739.1;Parent=gene-C9F05_RS14540;Dbxref=GenBank:WP_115409739.1;Name=WP_115409739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001280241.1;locus_tag=C9F05_RS14540;product=DUF5655 domain-containing protein;protein_id=WP_115409739.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	7223	9076	.	+	.	ID=gene-C9F05_RS14545;Name=C9F05_RS14545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14545;old_locus_tag=C9F05_14960
NZ_PYKE01000220.1	Protein Homology	CDS	7223	9076	.	+	0	ID=cds-WP_000102839.1;Parent=gene-C9F05_RS14545;Dbxref=GenBank:WP_000102839.1;Name=WP_000102839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000102841.1;locus_tag=C9F05_RS14545;product=GmrSD restriction endonuclease domain-containing protein;protein_id=WP_000102839.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	9121	9441	.	-	.	ID=gene-C9F05_RS14550;Name=symE;gbkey=Gene;gene=symE;gene_biotype=protein_coding;locus_tag=C9F05_RS14550;old_locus_tag=C9F05_14965
NZ_PYKE01000220.1	Protein Homology	CDS	9121	9441	.	-	0	ID=cds-WP_031605810.1;Parent=gene-C9F05_RS14550;Dbxref=GenBank:WP_031605810.1;Name=WP_031605810.1;gbkey=CDS;gene=symE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001551937.1;locus_tag=C9F05_RS14550;product=endoribonuclease SymE;protein_id=WP_031605810.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	9658	11448	.	-	.	ID=gene-C9F05_RS14555;Name=C9F05_RS14555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14555;old_locus_tag=C9F05_14970
NZ_PYKE01000220.1	Protein Homology	CDS	9658	11448	.	-	0	ID=cds-WP_135370405.1;Parent=gene-C9F05_RS14555;Dbxref=GenBank:WP_135370405.1;Name=WP_135370405.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000110089.1;locus_tag=C9F05_RS14555;product=restriction endonuclease subunit S;protein_id=WP_135370405.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	11448	12917	.	-	.	ID=gene-C9F05_RS14560;Name=C9F05_RS14560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14560;old_locus_tag=C9F05_14975
NZ_PYKE01000220.1	Protein Homology	CDS	11448	12917	.	-	0	ID=cds-WP_080204212.1;Parent=gene-C9F05_RS14560;Dbxref=GenBank:WP_080204212.1;Name=WP_080204212.1;Ontology_term=GO:0003677,GO:0008170;gbkey=CDS;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313334.2;locus_tag=C9F05_RS14560;product=N-6 DNA methylase;protein_id=WP_080204212.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	12988	15417	.	-	.	ID=gene-C9F05_RS14565;Name=hsdR;gbkey=Gene;gene=hsdR;gene_biotype=protein_coding;locus_tag=C9F05_RS14565;old_locus_tag=C9F05_14980
NZ_PYKE01000220.1	Protein Homology	CDS	12988	15417	.	-	0	ID=cds-WP_000774451.1;Parent=gene-C9F05_RS14565;Dbxref=GenBank:WP_000774451.1;Name=WP_000774451.1;Ontology_term=GO:0009307,GO:0003678,GO:0015666;gbkey=CDS;gene=hsdR;go_function=DNA helicase activity|0003678||IEA,restriction endodeoxyribonuclease activity|0015666||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313335.1;locus_tag=C9F05_RS14565;product=EcoAI/FtnUII family type I restriction enzme subunit R;protein_id=WP_000774451.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	15559	16527	.	+	.	ID=gene-C9F05_RS14570;Name=C9F05_RS14570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14570;old_locus_tag=C9F05_14985
NZ_PYKE01000220.1	Protein Homology	CDS	15559	16527	.	+	0	ID=cds-WP_135370406.1;Parent=gene-C9F05_RS14570;Dbxref=GenBank:WP_135370406.1;Name=WP_135370406.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441751.1;locus_tag=C9F05_RS14570;product=hypothetical protein;protein_id=WP_135370406.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	16643	17599	.	-	.	ID=gene-C9F05_RS14575;Name=yjiA;gbkey=Gene;gene=yjiA;gene_biotype=protein_coding;locus_tag=C9F05_RS14575;old_locus_tag=C9F05_14990
NZ_PYKE01000220.1	Protein Homology	CDS	16643	17599	.	-	0	ID=cds-WP_000187835.1;Parent=gene-C9F05_RS14575;Dbxref=GenBank:WP_000187835.1;Name=WP_000187835.1;gbkey=CDS;gene=yjiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463389.1;locus_tag=C9F05_RS14575;product=GTPase;protein_id=WP_000187835.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	17610	17813	.	-	.	ID=gene-C9F05_RS14580;Name=C9F05_RS14580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14580;old_locus_tag=C9F05_14995
NZ_PYKE01000220.1	Protein Homology	CDS	17610	17813	.	-	0	ID=cds-WP_000460616.1;Parent=gene-C9F05_RS14580;Dbxref=GenBank:WP_000460616.1;Name=WP_000460616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463390.1;locus_tag=C9F05_RS14580;product=YbdD/YjiX family protein;protein_id=WP_000460616.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	17908	20058	.	-	.	ID=gene-C9F05_RS14585;Name=btsT;gbkey=Gene;gene=btsT;gene_biotype=protein_coding;locus_tag=C9F05_RS14585;old_locus_tag=C9F05_15000
NZ_PYKE01000220.1	Protein Homology	CDS	17908	20058	.	-	0	ID=cds-WP_000379929.1;Parent=gene-C9F05_RS14585;Dbxref=GenBank:WP_000379929.1;Name=WP_000379929.1;gbkey=CDS;gene=btsT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463391.1;locus_tag=C9F05_RS14585;product=pyruvate/proton symporter BtsT;protein_id=WP_000379929.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	20425	22086	.	+	.	ID=gene-C9F05_RS14590;Name=tsr;gbkey=Gene;gene=tsr;gene_biotype=protein_coding;locus_tag=C9F05_RS14590;old_locus_tag=C9F05_15005
NZ_PYKE01000220.1	Protein Homology	CDS	20425	22086	.	+	0	ID=cds-WP_000919511.1;Parent=gene-C9F05_RS14590;Dbxref=GenBank:WP_000919511.1;Name=WP_000919511.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;gene=tsr;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463392.1;locus_tag=C9F05_RS14590;product=methyl-accepting chemotaxis protein;protein_id=WP_000919511.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	22409	25174	.	+	.	ID=gene-C9F05_RS14600;Name=C9F05_RS14600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14600;old_locus_tag=C9F05_15010
NZ_PYKE01000220.1	Protein Homology	CDS	22409	25174	.	+	0	ID=cds-WP_001224204.1;Parent=gene-C9F05_RS14600;Dbxref=GenBank:WP_001224204.1;Name=WP_001224204.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463393.1;locus_tag=C9F05_RS14600;product=sigma 54-interacting transcriptional regulator;protein_id=WP_001224204.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	25276	25698	.	+	.	ID=gene-C9F05_RS14605;Name=C9F05_RS14605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14605;old_locus_tag=C9F05_15015
NZ_PYKE01000220.1	Protein Homology	CDS	25276	25698	.	+	0	ID=cds-WP_000820693.1;Parent=gene-C9F05_RS14605;Dbxref=GenBank:WP_000820693.1;Name=WP_000820693.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463394.1;locus_tag=C9F05_RS14605;product=PTS sugar transporter subunit IIA;protein_id=WP_000820693.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	25713	26174	.	+	.	ID=gene-C9F05_RS14610;Name=C9F05_RS14610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14610;old_locus_tag=C9F05_15020
NZ_PYKE01000220.1	Protein Homology	CDS	25713	26174	.	+	0	ID=cds-WP_000634729.1;Parent=gene-C9F05_RS14610;Dbxref=GenBank:WP_000634729.1;Name=WP_000634729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463395.1;locus_tag=C9F05_RS14610;product=PTS sugar transporter subunit IIB;protein_id=WP_000634729.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	26200	26979	.	+	.	ID=gene-C9F05_RS14615;Name=C9F05_RS14615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14615;old_locus_tag=C9F05_15025
NZ_PYKE01000220.1	Protein Homology	CDS	26200	26979	.	+	0	ID=cds-WP_000228866.1;Parent=gene-C9F05_RS14615;Dbxref=GenBank:WP_000228866.1;Name=WP_000228866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463396.1;locus_tag=C9F05_RS14615;product=PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC;protein_id=WP_000228866.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	26957	27805	.	+	.	ID=gene-C9F05_RS14620;Name=C9F05_RS14620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14620;old_locus_tag=C9F05_15030
NZ_PYKE01000220.1	Protein Homology	CDS	26957	27805	.	+	0	ID=cds-WP_000178065.1;Parent=gene-C9F05_RS14620;Dbxref=GenBank:WP_000178065.1;Name=WP_000178065.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224959.1;locus_tag=C9F05_RS14620;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_000178065.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	27818	28879	.	+	.	ID=gene-C9F05_RS14625;Name=C9F05_RS14625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14625;old_locus_tag=C9F05_15035
NZ_PYKE01000220.1	Protein Homology	CDS	27818	28879	.	+	0	ID=cds-WP_020898341.1;Parent=gene-C9F05_RS14625;Dbxref=GenBank:WP_020898341.1;Name=WP_020898341.1;Ontology_term=GO:0005975,GO:0016787,GO:0097367;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463398.1;locus_tag=C9F05_RS14625;product=SIS domain-containing protein;protein_id=WP_020898341.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	28897	29907	.	+	.	ID=gene-C9F05_RS14630;Name=C9F05_RS14630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14630;old_locus_tag=C9F05_15040
NZ_PYKE01000220.1	Protein Homology	CDS	28897	29907	.	+	0	ID=cds-WP_000900307.1;Parent=gene-C9F05_RS14630;Dbxref=GenBank:WP_000900307.1;Name=WP_000900307.1;Ontology_term=GO:1901135,GO:0097367;gbkey=CDS;go_function=carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224961.1;locus_tag=C9F05_RS14630;product=SIS domain-containing protein;protein_id=WP_000900307.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	30041	32332	.	-	.	ID=gene-C9F05_RS14635;Name=opgB;gbkey=Gene;gene=opgB;gene_biotype=protein_coding;locus_tag=C9F05_RS14635;old_locus_tag=C9F05_15045
NZ_PYKE01000220.1	Protein Homology	CDS	30041	32332	.	-	0	ID=cds-WP_135370407.1;Parent=gene-C9F05_RS14635;Dbxref=GenBank:WP_135370407.1;Name=WP_135370407.1;Ontology_term=GO:0008484;gbkey=CDS;gene=opgB;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418779.2;locus_tag=C9F05_RS14635;product=phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase;protein_id=WP_135370407.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	32615	33076	.	-	.	ID=gene-C9F05_RS14640;Name=C9F05_RS14640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14640;old_locus_tag=C9F05_15050
NZ_PYKE01000220.1	Protein Homology	CDS	32615	33076	.	-	0	ID=cds-WP_001090314.1;Parent=gene-C9F05_RS14640;Dbxref=GenBank:WP_001090314.1;Name=WP_001090314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463401.1;locus_tag=C9F05_RS14640;product=DUF2501 domain-containing protein;protein_id=WP_001090314.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	33134	33871	.	-	.	ID=gene-C9F05_RS14645;Name=dnaC;gbkey=Gene;gene=dnaC;gene_biotype=protein_coding;locus_tag=C9F05_RS14645;old_locus_tag=C9F05_15055
NZ_PYKE01000220.1	Protein Homology	CDS	33134	33871	.	-	0	ID=cds-WP_000799924.1;Parent=gene-C9F05_RS14645;Dbxref=GenBank:WP_000799924.1;Name=WP_000799924.1;gbkey=CDS;gene=dnaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463402.1;locus_tag=C9F05_RS14645;product=DNA replication protein DnaC;protein_id=WP_000799924.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	33874	34413	.	-	.	ID=gene-C9F05_RS14650;Name=dnaT;gbkey=Gene;gene=dnaT;gene_biotype=protein_coding;locus_tag=C9F05_RS14650;old_locus_tag=C9F05_15060
NZ_PYKE01000220.1	Protein Homology	CDS	33874	34413	.	-	0	ID=cds-WP_000098573.1;Parent=gene-C9F05_RS14650;Dbxref=GenBank:WP_000098573.1;Name=WP_000098573.1;gbkey=CDS;gene=dnaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463403.1;locus_tag=C9F05_RS14650;product=primosomal protein DnaT;protein_id=WP_000098573.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	34506	34979	.	-	.	ID=gene-C9F05_RS14655;Name=C9F05_RS14655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14655;old_locus_tag=C9F05_15065
NZ_PYKE01000220.1	Protein Homology	CDS	34506	34979	.	-	0	ID=cds-WP_000511329.1;Parent=gene-C9F05_RS14655;Dbxref=GenBank:WP_000511329.1;Name=WP_000511329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463404.1;locus_tag=C9F05_RS14655;product=threonine/serine exporter;protein_id=WP_000511329.1;transl_table=11
NZ_PYKE01000220.1	RefSeq	gene	34970	35746	.	-	.	ID=gene-C9F05_RS14660;Name=C9F05_RS14660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14660;old_locus_tag=C9F05_15070
NZ_PYKE01000220.1	Protein Homology	CDS	34970	35746	.	-	0	ID=cds-WP_001747536.1;Parent=gene-C9F05_RS14660;Dbxref=GenBank:WP_001747536.1;Name=WP_001747536.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418784.4;locus_tag=C9F05_RS14660;product=threonine/serine ThrE exporter family protein;protein_id=WP_001747536.1;transl_table=11
##sequence-region NZ_PYKE01000149.1 1 7775
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000149.1	RefSeq	region	1	7775	.	+	.	ID=NZ_PYKE01000149.1:1..7775;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000149.1	RefSeq	pseudogene	1	648	.	+	.	ID=gene-C9F05_RS10705;Name=siiD;gbkey=Gene;gene=siiD;gene_biotype=pseudogene;locus_tag=C9F05_RS10705;old_locus_tag=C9F05_10970;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000149.1	Protein Homology	CDS	1	648	.	+	0	ID=cds-C9F05_RS10705;Parent=gene-C9F05_RS10705;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=siiD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463125.1;locus_tag=C9F05_RS10705;partial=true;product=SPI-4 type I secretion system protein SiiD;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000149.1	RefSeq	pseudogene	665	7775	.	+	.	ID=gene-C9F05_RS10710;Name=siiE;end_range=7775,.;gbkey=Gene;gene=siiE;gene_biotype=pseudogene;locus_tag=C9F05_RS10710;old_locus_tag=C9F05_10975;partial=true;pseudo=true
NZ_PYKE01000149.1	Protein Homology	CDS	665	7775	.	+	0	ID=cds-C9F05_RS10710;Parent=gene-C9F05_RS10710;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=7775,.;gbkey=CDS;gene=siiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463126.1;locus_tag=C9F05_RS10710;partial=true;product=non-fimbrial adhesin SiiE;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000332.1 1 7740
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000332.1	RefSeq	region	1	7740	.	+	.	ID=NZ_PYKE01000332.1:1..7740;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000332.1	RefSeq	gene	1	847	.	-	.	ID=gene-C9F05_RS22510;Name=C9F05_RS22510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22510;old_locus_tag=C9F05_23105;partial=true;start_range=.,1
NZ_PYKE01000332.1	Protein Homology	CDS	1	847	.	-	0	ID=cds-WP_135370657.1;Parent=gene-C9F05_RS22510;Dbxref=GenBank:WP_135370657.1;Name=WP_135370657.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9F05_RS22510;partial=true;product=pyruvate carboxylase subunit B;protein_id=WP_135370657.1;start_range=.,1;transl_table=11
NZ_PYKE01000332.1	RefSeq	gene	863	1114	.	-	.	ID=gene-C9F05_RS22515;Name=C9F05_RS22515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22515;old_locus_tag=C9F05_23110
NZ_PYKE01000332.1	Protein Homology	CDS	863	1114	.	-	0	ID=cds-WP_135370658.1;Parent=gene-C9F05_RS22515;Dbxref=GenBank:WP_135370658.1;Name=WP_135370658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004107724.1;locus_tag=C9F05_RS22515;product=oxaloacetate decarboxylase subunit gamma;protein_id=WP_135370658.1;transl_table=11
NZ_PYKE01000332.1	RefSeq	gene	1271	1888	.	-	.	ID=gene-C9F05_RS22520;Name=ttdB;gbkey=Gene;gene=ttdB;gene_biotype=protein_coding;locus_tag=C9F05_RS22520;old_locus_tag=C9F05_23115
NZ_PYKE01000332.1	Protein Homology	CDS	1271	1888	.	-	0	ID=cds-WP_000162405.1;Parent=gene-C9F05_RS22520;Dbxref=GenBank:WP_000162405.1;Name=WP_000162405.1;Ontology_term=GO:0016836;gbkey=CDS;gene=ttdB;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462264.1;locus_tag=C9F05_RS22520;product=L(+)-tartrate dehydratase subunit beta;protein_id=WP_000162405.1;transl_table=11
NZ_PYKE01000332.1	RefSeq	gene	1888	2787	.	-	.	ID=gene-C9F05_RS22525;Name=ttdA;gbkey=Gene;gene=ttdA;gene_biotype=protein_coding;locus_tag=C9F05_RS22525;old_locus_tag=C9F05_23120
NZ_PYKE01000332.1	Protein Homology	CDS	1888	2787	.	-	0	ID=cds-WP_000045349.1;Parent=gene-C9F05_RS22525;Dbxref=GenBank:WP_000045349.1;Name=WP_000045349.1;Ontology_term=GO:0008730;gbkey=CDS;gene=ttdA;go_function=L(+)-tartrate dehydratase activity|0008730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462265.1;locus_tag=C9F05_RS22525;product=L(+)-tartrate dehydratase subunit alpha;protein_id=WP_000045349.1;transl_table=11
NZ_PYKE01000332.1	RefSeq	gene	2820	4088	.	-	.	ID=gene-C9F05_RS22530;Name=C9F05_RS22530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22530;old_locus_tag=C9F05_23125
NZ_PYKE01000332.1	Protein Homology	CDS	2820	4088	.	-	0	ID=cds-WP_000433394.1;Parent=gene-C9F05_RS22530;Dbxref=GenBank:WP_000433394.1;Name=WP_000433394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462266.1;locus_tag=C9F05_RS22530;product=SLC13 family permease;protein_id=WP_000433394.1;transl_table=11
NZ_PYKE01000332.1	RefSeq	gene	4299	4964	.	-	.	ID=gene-C9F05_RS22535;Name=C9F05_RS22535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22535;old_locus_tag=C9F05_23130
NZ_PYKE01000332.1	Protein Homology	CDS	4299	4964	.	-	0	ID=cds-WP_001171581.1;Parent=gene-C9F05_RS22535;Dbxref=GenBank:WP_001171581.1;Name=WP_001171581.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462267.1;locus_tag=C9F05_RS22535;product=GntR family transcriptional regulator;protein_id=WP_001171581.1;transl_table=11
NZ_PYKE01000332.1	RefSeq	gene	4951	5580	.	-	.	ID=gene-C9F05_RS22540;Name=C9F05_RS22540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22540;old_locus_tag=C9F05_23135
NZ_PYKE01000332.1	Protein Homology	CDS	4951	5580	.	-	0	ID=cds-WP_079958870.1;Parent=gene-C9F05_RS22540;Dbxref=GenBank:WP_079958870.1;Name=WP_079958870.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462268.1;locus_tag=C9F05_RS22540;product=GntR family transcriptional regulator;protein_id=WP_079958870.1;transl_table=11
NZ_PYKE01000332.1	RefSeq	gene	5700	6638	.	-	.	ID=gene-C9F05_RS22545;Name=mdh;gbkey=Gene;gene=mdh;gene_biotype=protein_coding;locus_tag=C9F05_RS22545;old_locus_tag=C9F05_23140
NZ_PYKE01000332.1	Protein Homology	CDS	5700	6638	.	-	0	ID=cds-WP_000861586.1;Parent=gene-C9F05_RS22545;Dbxref=GenBank:WP_000861586.1;Name=WP_000861586.1;Ontology_term=GO:0006099,GO:0030060;gbkey=CDS;gene=mdh;go_function=L-malate dehydrogenase (NAD+) activity|0030060||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000861594.1;locus_tag=C9F05_RS22545;product=malate dehydrogenase;protein_id=WP_000861586.1;transl_table=11
NZ_PYKE01000332.1	RefSeq	gene	7053	7523	.	+	.	ID=gene-C9F05_RS22550;Name=argR;gbkey=Gene;gene=argR;gene_biotype=protein_coding;locus_tag=C9F05_RS22550;old_locus_tag=C9F05_23145
NZ_PYKE01000332.1	Protein Homology	CDS	7053	7523	.	+	0	ID=cds-WP_001257852.1;Parent=gene-C9F05_RS22550;Dbxref=GenBank:WP_001257852.1;Name=WP_001257852.1;gbkey=CDS;gene=argR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001257852.1;locus_tag=C9F05_RS22550;product=transcriptional regulator ArgR;protein_id=WP_001257852.1;transl_table=11
##sequence-region NZ_PYKE01000343.1 1 35594
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000343.1	RefSeq	region	1	35594	.	+	.	ID=NZ_PYKE01000343.1:1..35594;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000343.1	RefSeq	gene	160	2280	.	+	.	ID=gene-C9F05_RS23300;Name=pqqU;gbkey=Gene;gene=pqqU;gene_biotype=protein_coding;locus_tag=C9F05_RS23300;old_locus_tag=C9F05_23895
NZ_PYKE01000343.1	Protein Homology	CDS	160	2280	.	+	0	ID=cds-WP_135370679.1;Parent=gene-C9F05_RS23300;Dbxref=GenBank:WP_135370679.1;Name=WP_135370679.1;gbkey=CDS;gene=pqqU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460546.1;locus_tag=C9F05_RS23300;product=TonB-dependent receptor PqqU;protein_id=WP_135370679.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	2336	3001	.	-	.	ID=gene-C9F05_RS23305;Name=mcbR;gbkey=Gene;gene=mcbR;gene_biotype=protein_coding;locus_tag=C9F05_RS23305;old_locus_tag=C9F05_23900
NZ_PYKE01000343.1	Protein Homology	CDS	2336	3001	.	-	0	ID=cds-WP_058214741.1;Parent=gene-C9F05_RS23305;Dbxref=GenBank:WP_058214741.1;Name=WP_058214741.1;gbkey=CDS;gene=mcbR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460547.1;locus_tag=C9F05_RS23305;product=colanic acid/biofilm transcriptional regulator McbR;protein_id=WP_058214741.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	3335	4372	.	-	.	ID=gene-C9F05_RS23310;Name=C9F05_RS23310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23310;old_locus_tag=C9F05_23905
NZ_PYKE01000343.1	Protein Homology	CDS	3335	4372	.	-	0	ID=cds-WP_001522633.1;Parent=gene-C9F05_RS23310;Dbxref=GenBank:WP_001522633.1;Name=WP_001522633.1;Ontology_term=GO:0016628;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors%2C NAD or NADP as acceptor|0016628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001517827.1;locus_tag=C9F05_RS23310;product=NADP-dependent oxidoreductase;protein_id=WP_001522633.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	4584	5099	.	+	.	ID=gene-C9F05_RS23315;Name=mddA;gbkey=Gene;gene=mddA;gene_biotype=protein_coding;locus_tag=C9F05_RS23315;old_locus_tag=C9F05_23910
NZ_PYKE01000343.1	Protein Homology	CDS	4584	5099	.	+	0	ID=cds-WP_000155373.1;Parent=gene-C9F05_RS23315;Dbxref=GenBank:WP_000155373.1;Name=WP_000155373.1;Note=Keep exception level- 87%25 similar to E. coli K12 P76112%2C different gene symbol;gbkey=CDS;gene=mddA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460549.1;locus_tag=C9F05_RS23315;product=L-methionine sulfoximine/L-methionine sulfone acetyltransferase;protein_id=WP_000155373.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	5099	5548	.	+	.	ID=gene-C9F05_RS23320;Name=C9F05_RS23320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23320;old_locus_tag=C9F05_23915
NZ_PYKE01000343.1	Protein Homology	CDS	5099	5548	.	+	0	ID=cds-WP_001076571.1;Parent=gene-C9F05_RS23320;Dbxref=GenBank:WP_001076571.1;Name=WP_001076571.1;Ontology_term=GO:0055085,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460550.1;locus_tag=C9F05_RS23320;product=DMT family transporter;protein_id=WP_001076571.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	5553	5786	.	-	.	ID=gene-C9F05_RS23325;Name=C9F05_RS23325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23325;old_locus_tag=C9F05_23920
NZ_PYKE01000343.1	Protein Homology	CDS	5553	5786	.	-	0	ID=cds-WP_000018720.1;Parent=gene-C9F05_RS23325;Dbxref=GenBank:WP_000018720.1;Name=WP_000018720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460551.1;locus_tag=C9F05_RS23325;product=YdcY family protein;protein_id=WP_000018720.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	6010	7335	.	+	.	ID=gene-C9F05_RS23330;Name=srfA;gbkey=Gene;gene=srfA;gene_biotype=protein_coding;locus_tag=C9F05_RS23330;old_locus_tag=C9F05_23925
NZ_PYKE01000343.1	Protein Homology	CDS	6010	7335	.	+	0	ID=cds-WP_135370680.1;Parent=gene-C9F05_RS23330;Dbxref=GenBank:WP_135370680.1;Name=WP_135370680.1;gbkey=CDS;gene=srfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460552.1;locus_tag=C9F05_RS23330;product=virulence-associated effector SrfA;protein_id=WP_135370680.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	7340	10321	.	+	.	ID=gene-C9F05_RS23335;Name=C9F05_RS23335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23335;old_locus_tag=C9F05_23930
NZ_PYKE01000343.1	Protein Homology	CDS	7340	10321	.	+	0	ID=cds-WP_135370681.1;Parent=gene-C9F05_RS23335;Dbxref=GenBank:WP_135370681.1;Name=WP_135370681.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460553.1;locus_tag=C9F05_RS23335;product=virulence factor SrfB;protein_id=WP_135370681.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	10318	12462	.	+	.	ID=gene-C9F05_RS23340;Name=srfC;gbkey=Gene;gene=srfC;gene_biotype=protein_coding;locus_tag=C9F05_RS23340;old_locus_tag=C9F05_23935
NZ_PYKE01000343.1	Protein Homology	CDS	10318	12462	.	+	0	ID=cds-WP_135370682.1;Parent=gene-C9F05_RS23340;Dbxref=GenBank:WP_135370682.1;Name=WP_135370682.1;gbkey=CDS;gene=srfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460554.1;locus_tag=C9F05_RS23340;product=virulence-associated effector SrfC;protein_id=WP_135370682.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	12507	12680	.	-	.	ID=gene-C9F05_RS23345;Name=C9F05_RS23345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23345;old_locus_tag=C9F05_23940
NZ_PYKE01000343.1	Protein Homology	CDS	12507	12680	.	-	0	ID=cds-WP_000171943.1;Parent=gene-C9F05_RS23345;Dbxref=GenBank:WP_000171943.1;Name=WP_000171943.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415962.2;locus_tag=C9F05_RS23345;product=GhoT/OrtT family toxin;protein_id=WP_000171943.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	12879	12974	.	+	.	ID=gene-C9F05_RS23350;Name=yncL;gbkey=Gene;gene=yncL;gene_biotype=protein_coding;locus_tag=C9F05_RS23350;old_locus_tag=C9F05_23945
NZ_PYKE01000343.1	Protein Homology	CDS	12879	12974	.	+	0	ID=cds-WP_001103198.1;Parent=gene-C9F05_RS23350;Dbxref=GenBank:WP_001103198.1;Name=WP_001103198.1;gbkey=CDS;gene=yncL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001103198.1;locus_tag=C9F05_RS23350;product=stress response membrane protein YncL;protein_id=WP_001103198.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	13079	14524	.	-	.	ID=gene-C9F05_RS23355;Name=patD;gbkey=Gene;gene=patD;gene_biotype=protein_coding;locus_tag=C9F05_RS23355;old_locus_tag=C9F05_23950
NZ_PYKE01000343.1	Protein Homology	CDS	13079	14524	.	-	0	ID=cds-WP_072276816.1;Parent=gene-C9F05_RS23355;Dbxref=GenBank:WP_072276816.1;Name=WP_072276816.1;Ontology_term=GO:0009447,GO:0019145,GO:0051287;gbkey=CDS;gene=patD;go_function=aminobutyraldehyde dehydrogenase (NAD+) activity|0019145||IEA,NAD binding|0051287||IEA;go_process=putrescine catabolic process|0009447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460556.3;locus_tag=C9F05_RS23355;product=aminobutyraldehyde dehydrogenase;protein_id=WP_072276816.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	14639	16063	.	-	.	ID=gene-C9F05_RS23360;Name=ycdR;gbkey=Gene;gene=ycdR;gene_biotype=protein_coding;locus_tag=C9F05_RS23360;old_locus_tag=C9F05_23955
NZ_PYKE01000343.1	Protein Homology	CDS	14639	16063	.	-	0	ID=cds-WP_000760692.1;Parent=gene-C9F05_RS23360;Dbxref=GenBank:WP_000760692.1;Name=WP_000760692.1;gbkey=CDS;gene=ycdR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460557.1;locus_tag=C9F05_RS23360;product=GntR family transcriptional regulator YdcR;protein_id=WP_000760692.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	16199	16969	.	-	.	ID=gene-C9F05_RS23365;Name=C9F05_RS23365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23365;old_locus_tag=C9F05_23960
NZ_PYKE01000343.1	Protein Homology	CDS	16199	16969	.	-	0	ID=cds-WP_076735639.1;Parent=gene-C9F05_RS23365;Dbxref=GenBank:WP_076735639.1;Name=WP_076735639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460558.1;locus_tag=C9F05_RS23365;product=M15 family metallopeptidase;protein_id=WP_076735639.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	pseudogene	17229	17460	.	-	.	ID=gene-C9F05_RS23370;Name=C9F05_RS23370;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23370;old_locus_tag=C9F05_23965;pseudo=true
NZ_PYKE01000343.1	Protein Homology	CDS	17229	17460	.	-	0	ID=cds-C9F05_RS23370;Parent=gene-C9F05_RS23370;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448018.1;locus_tag=C9F05_RS23370;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	17493	17891	.	-	.	ID=gene-C9F05_RS23375;Name=ugtL;gbkey=Gene;gene=ugtL;gene_biotype=protein_coding;locus_tag=C9F05_RS23375;old_locus_tag=C9F05_23970
NZ_PYKE01000343.1	Protein Homology	CDS	17493	17891	.	-	0	ID=cds-WP_135370683.1;Parent=gene-C9F05_RS23375;Dbxref=GenBank:WP_135370683.1;Name=WP_135370683.1;gbkey=CDS;gene=ugtL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460560.1;locus_tag=C9F05_RS23375;product=regulatory protein UgtL;protein_id=WP_135370683.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	18407	19357	.	+	.	ID=gene-C9F05_RS23380;Name=sifB;gbkey=Gene;gene=sifB;gene_biotype=protein_coding;locus_tag=C9F05_RS23380;old_locus_tag=C9F05_23975
NZ_PYKE01000343.1	Protein Homology	CDS	18407	19357	.	+	0	ID=cds-WP_135370684.1;Parent=gene-C9F05_RS23380;Dbxref=GenBank:WP_135370684.1;Name=WP_135370684.1;gbkey=CDS;gene=sifB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460561.1;locus_tag=C9F05_RS23380;product=SPI-2 type III secretion system effector SifB;protein_id=WP_135370684.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	19630	19860	.	+	.	ID=gene-C9F05_RS23385;Name=C9F05_RS23385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23385;old_locus_tag=C9F05_23980
NZ_PYKE01000343.1	Protein Homology	CDS	19630	19860	.	+	0	ID=cds-WP_061380119.1;Parent=gene-C9F05_RS23385;Dbxref=GenBank:WP_061380119.1;Name=WP_061380119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460562.1;locus_tag=C9F05_RS23385;product=YncJ family protein;protein_id=WP_061380119.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	19861	21825	.	-	.	ID=gene-C9F05_RS23390;Name=C9F05_RS23390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23390;old_locus_tag=C9F05_23985
NZ_PYKE01000343.1	Protein Homology	CDS	19861	21825	.	-	0	ID=cds-WP_135370685.1;Parent=gene-C9F05_RS23390;Dbxref=GenBank:WP_135370685.1;Name=WP_135370685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460563.1;locus_tag=C9F05_RS23390;product=peptidase U32 family protein;protein_id=WP_135370685.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	21904	22440	.	-	.	ID=gene-C9F05_RS23395;Name=C9F05_RS23395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23395;old_locus_tag=C9F05_23990
NZ_PYKE01000343.1	Protein Homology	CDS	21904	22440	.	-	0	ID=cds-WP_000369543.1;Parent=gene-C9F05_RS23395;Dbxref=GenBank:WP_000369543.1;Name=WP_000369543.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460564.1;locus_tag=C9F05_RS23395;product=helix-turn-helix domain-containing protein;protein_id=WP_000369543.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	22532	23710	.	+	.	ID=gene-C9F05_RS23400;Name=C9F05_RS23400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23400;old_locus_tag=C9F05_23995
NZ_PYKE01000343.1	Protein Homology	CDS	22532	23710	.	+	0	ID=cds-WP_135370686.1;Parent=gene-C9F05_RS23400;Dbxref=GenBank:WP_135370686.1;Name=WP_135370686.1;Ontology_term=GO:0042919,GO:0042925,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=benzoate transmembrane transporter activity|0042925||IEA;go_process=benzoate transport|0042919||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460565.1;locus_tag=C9F05_RS23400;product=benzoate/H(+) symporter BenE family transporter;protein_id=WP_135370686.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	23764	24432	.	-	.	ID=gene-C9F05_RS23405;Name=C9F05_RS23405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23405;old_locus_tag=C9F05_24000
NZ_PYKE01000343.1	Protein Homology	CDS	23764	24432	.	-	0	ID=cds-WP_001259023.1;Parent=gene-C9F05_RS23405;Dbxref=GenBank:WP_001259023.1;Name=WP_001259023.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460566.1;locus_tag=C9F05_RS23405;product=DUF3313 domain-containing protein;protein_id=WP_001259023.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	24588	25184	.	-	.	ID=gene-C9F05_RS23410;Name=tehB;gbkey=Gene;gene=tehB;gene_biotype=protein_coding;locus_tag=C9F05_RS23410;old_locus_tag=C9F05_24005
NZ_PYKE01000343.1	Protein Homology	CDS	24588	25184	.	-	0	ID=cds-WP_135370687.1;Parent=gene-C9F05_RS23410;Dbxref=GenBank:WP_135370687.1;Name=WP_135370687.1;Ontology_term=GO:0046690,GO:0008757;gbkey=CDS;gene=tehB;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=response to tellurium ion|0046690||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460567.1;locus_tag=C9F05_RS23410;product=tellurite resistance methyltransferase TehB;protein_id=WP_135370687.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	25171	26184	.	-	.	ID=gene-C9F05_RS23415;Name=tehA;gbkey=Gene;gene=tehA;gene_biotype=protein_coding;locus_tag=C9F05_RS23415;old_locus_tag=C9F05_24010
NZ_PYKE01000343.1	Protein Homology	CDS	25171	26184	.	-	0	ID=cds-WP_001243996.1;Parent=gene-C9F05_RS23415;Dbxref=GenBank:WP_001243996.1;Name=WP_001243996.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=tehA;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460568.1;locus_tag=C9F05_RS23415;product=dicarboxylate transporter/tellurite-resistance protein TehA;protein_id=WP_001243996.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	26291	27271	.	+	.	ID=gene-C9F05_RS23420;Name=ydcK;gbkey=Gene;gene=ydcK;gene_biotype=protein_coding;locus_tag=C9F05_RS23420;old_locus_tag=C9F05_24015
NZ_PYKE01000343.1	Protein Homology	CDS	26291	27271	.	+	0	ID=cds-WP_001527770.1;Parent=gene-C9F05_RS23420;Dbxref=GenBank:WP_001527770.1;Name=WP_001527770.1;gbkey=CDS;gene=ydcK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460569.1;locus_tag=C9F05_RS23420;product=YdcK family protein;protein_id=WP_001527770.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	27268	27807	.	-	.	ID=gene-C9F05_RS23425;Name=rimL;gbkey=Gene;gene=rimL;gene_biotype=protein_coding;locus_tag=C9F05_RS23425;old_locus_tag=C9F05_24020
NZ_PYKE01000343.1	Protein Homology	CDS	27268	27807	.	-	0	ID=cds-WP_000229306.1;Parent=gene-C9F05_RS23425;Dbxref=GenBank:WP_000229306.1;Name=WP_000229306.1;gbkey=CDS;gene=rimL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460570.1;locus_tag=C9F05_RS23425;product=50S ribosomal protein L7/L12-serine acetyltransferase;protein_id=WP_000229306.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	28024	29142	.	+	.	ID=gene-C9F05_RS23430;Name=C9F05_RS23430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23430;old_locus_tag=C9F05_24025
NZ_PYKE01000343.1	Protein Homology	CDS	28024	29142	.	+	0	ID=cds-WP_135370688.1;Parent=gene-C9F05_RS23430;Dbxref=GenBank:WP_135370688.1;Name=WP_135370688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460571.1;locus_tag=C9F05_RS23430;product=M42 family metallopeptidase;protein_id=WP_135370688.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	29139	29420	.	+	.	ID=gene-C9F05_RS23435;Name=sgcB;gbkey=Gene;gene=sgcB;gene_biotype=protein_coding;locus_tag=C9F05_RS23435;old_locus_tag=C9F05_24030
NZ_PYKE01000343.1	Protein Homology	CDS	29139	29420	.	+	0	ID=cds-WP_000976132.1;Parent=gene-C9F05_RS23435;Dbxref=GenBank:WP_000976132.1;Name=WP_000976132.1;gbkey=CDS;gene=sgcB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460572.1;locus_tag=C9F05_RS23435;product=PTS sugar transporter subunit IIB SgcB;protein_id=WP_000976132.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	29431	30744	.	+	.	ID=gene-C9F05_RS23440;Name=sgcC;gbkey=Gene;gene=sgcC;gene_biotype=protein_coding;locus_tag=C9F05_RS23440;old_locus_tag=C9F05_24035
NZ_PYKE01000343.1	Protein Homology	CDS	29431	30744	.	+	0	ID=cds-WP_000460835.1;Parent=gene-C9F05_RS23440;Dbxref=GenBank:WP_000460835.1;Name=WP_000460835.1;gbkey=CDS;gene=sgcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460573.1;locus_tag=C9F05_RS23440;product=PTS sugar transporter subunit IIC SgcC;protein_id=WP_000460835.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	30758	31564	.	+	.	ID=gene-C9F05_RS23445;Name=sgcQ;gbkey=Gene;gene=sgcQ;gene_biotype=protein_coding;locus_tag=C9F05_RS23445;old_locus_tag=C9F05_24040
NZ_PYKE01000343.1	Protein Homology	CDS	30758	31564	.	+	0	ID=cds-WP_000118620.1;Parent=gene-C9F05_RS23445;Dbxref=GenBank:WP_000118620.1;Name=WP_000118620.1;gbkey=CDS;gene=sgcQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460574.1;locus_tag=C9F05_RS23445;product=BtpA family protein SgcQ;protein_id=WP_000118620.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	31696	32133	.	+	.	ID=gene-C9F05_RS23450;Name=sgcA;gbkey=Gene;gene=sgcA;gene_biotype=protein_coding;locus_tag=C9F05_RS23450;old_locus_tag=C9F05_24045
NZ_PYKE01000343.1	Protein Homology	CDS	31696	32133	.	+	0	ID=cds-WP_000606454.1;Parent=gene-C9F05_RS23450;Dbxref=GenBank:WP_000606454.1;Name=WP_000606454.1;gbkey=CDS;gene=sgcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460575.1;locus_tag=C9F05_RS23450;product=SgcA family PTS sugar transporter subunit IIA;protein_id=WP_000606454.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	32145	32777	.	+	.	ID=gene-C9F05_RS23455;Name=C9F05_RS23455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23455;old_locus_tag=C9F05_24050
NZ_PYKE01000343.1	Protein Homology	CDS	32145	32777	.	+	0	ID=cds-WP_135370689.1;Parent=gene-C9F05_RS23455;Dbxref=GenBank:WP_135370689.1;Name=WP_135370689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460576.1;locus_tag=C9F05_RS23455;product=ribulose-phosphate 3 epimerase family protein;protein_id=WP_135370689.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	32793	33584	.	+	.	ID=gene-C9F05_RS23460;Name=C9F05_RS23460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23460;old_locus_tag=C9F05_24055
NZ_PYKE01000343.1	Protein Homology	CDS	32793	33584	.	+	0	ID=cds-WP_001670738.1;Parent=gene-C9F05_RS23460;Dbxref=GenBank:WP_001670738.1;Name=WP_001670738.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460577.1;locus_tag=C9F05_RS23460;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_001670738.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	33584	34021	.	+	.	ID=gene-C9F05_RS23465;Name=aac(6');gbkey=Gene;gene=aac(6');gene_biotype=protein_coding;locus_tag=C9F05_RS23465;old_locus_tag=C9F05_24060
NZ_PYKE01000343.1	Protein Homology	CDS	33584	34021	.	+	0	ID=cds-WP_000354851.1;Parent=gene-C9F05_RS23465;Dbxref=GenBank:WP_000354851.1;Name=WP_000354851.1;gbkey=CDS;gene=aac(6');inference=COORDINATES: similar to AA sequence:RefSeq:NP_460578.1;locus_tag=C9F05_RS23465;product=cryptic aminoglycoside N-acetyltransferase AAC(6')-Iy/Iaa;protein_id=WP_000354851.1;transl_table=11
NZ_PYKE01000343.1	RefSeq	gene	34162	35415	.	-	.	ID=gene-C9F05_RS23470;Name=C9F05_RS23470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23470;old_locus_tag=C9F05_24065
NZ_PYKE01000343.1	Protein Homology	CDS	34162	35415	.	-	0	ID=cds-WP_031605310.1;Parent=gene-C9F05_RS23470;Dbxref=GenBank:WP_031605310.1;Name=WP_031605310.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000067287.1;locus_tag=C9F05_RS23470;product=enolase C-terminal domain-like protein;protein_id=WP_031605310.1;transl_table=11
##sequence-region NZ_PYKE01000144.1 1 7465
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000144.1	RefSeq	region	1	7465	.	+	.	ID=NZ_PYKE01000144.1:1..7465;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000144.1	RefSeq	gene	223	1128	.	-	.	ID=gene-C9F05_RS10460;Name=C9F05_RS10460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10460;old_locus_tag=C9F05_10720
NZ_PYKE01000144.1	Protein Homology	CDS	223	1128	.	-	0	ID=cds-WP_001268195.1;Parent=gene-C9F05_RS10460;Dbxref=GenBank:WP_001268195.1;Name=WP_001268195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463175.1;locus_tag=C9F05_RS10460;product=SdiA-regulated domain-containing protein;protein_id=WP_001268195.1;transl_table=11
NZ_PYKE01000144.1	RefSeq	gene	1432	2832	.	+	.	ID=gene-C9F05_RS10465;Name=C9F05_RS10465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10465;old_locus_tag=C9F05_10725
NZ_PYKE01000144.1	Protein Homology	CDS	1432	2832	.	+	0	ID=cds-WP_135370247.1;Parent=gene-C9F05_RS10465;Dbxref=GenBank:WP_135370247.1;Name=WP_135370247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463174.1;locus_tag=C9F05_RS10465;product=CBM96 family carbohydrate-binding protein;protein_id=WP_135370247.1;transl_table=11
NZ_PYKE01000144.1	RefSeq	gene	2916	3509	.	-	.	ID=gene-C9F05_RS10470;Name=C9F05_RS10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10470;old_locus_tag=C9F05_10730
NZ_PYKE01000144.1	Protein Homology	CDS	2916	3509	.	-	0	ID=cds-WP_369597816.1;Parent=gene-C9F05_RS10470;Dbxref=GenBank:WP_369597816.1;Name=WP_369597816.1;Ontology_term=GO:0006457;gbkey=CDS;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001629474.1;locus_tag=C9F05_RS10470;product=TorD/DmsD family molecular chaperone;protein_id=WP_369597816.1;transl_table=11
NZ_PYKE01000144.1	RefSeq	gene	3584	4357	.	-	.	ID=gene-C9F05_RS10475;Name=C9F05_RS10475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10475;old_locus_tag=C9F05_10735
NZ_PYKE01000144.1	Protein Homology	CDS	3584	4357	.	-	0	ID=cds-WP_000544929.1;Parent=gene-C9F05_RS10475;Dbxref=GenBank:WP_000544929.1;Name=WP_000544929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463172.1;locus_tag=C9F05_RS10475;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_000544929.1;transl_table=11
NZ_PYKE01000144.1	RefSeq	gene	4350	4976	.	-	.	ID=gene-C9F05_RS10480;Name=C9F05_RS10480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10480;old_locus_tag=C9F05_10740
NZ_PYKE01000144.1	Protein Homology	CDS	4350	4976	.	-	0	ID=cds-WP_000816143.1;Parent=gene-C9F05_RS10480;Dbxref=GenBank:WP_000816143.1;Name=WP_000816143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463171.1;locus_tag=C9F05_RS10480;product=DMSO/selenate family reductase complex B subunit;protein_id=WP_000816143.1;transl_table=11
NZ_PYKE01000144.1	RefSeq	gene	4990	7419	.	-	.	ID=gene-C9F05_RS10485;Name=C9F05_RS10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10485;old_locus_tag=C9F05_10745
NZ_PYKE01000144.1	Protein Homology	CDS	4990	7419	.	-	0	ID=cds-WP_167851644.1;Parent=gene-C9F05_RS10485;Dbxref=GenBank:WP_167851644.1;Name=WP_167851644.1;Ontology_term=GO:0009389,GO:0030151,GO:0051539;gbkey=CDS;go_function=dimethyl sulfoxide reductase activity|0009389||IEA,molybdenum ion binding|0030151||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000403483.1;locus_tag=C9F05_RS10485;product=DMSO/selenate family reductase complex A subunit;protein_id=WP_167851644.1;transl_table=11
##sequence-region NZ_PYKE01000316.1 1 7462
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000316.1	RefSeq	region	1	7462	.	+	.	ID=NZ_PYKE01000316.1:1..7462;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000316.1	RefSeq	gene	100	549	.	-	.	ID=gene-C9F05_RS21565;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=C9F05_RS21565;old_locus_tag=C9F05_22150
NZ_PYKE01000316.1	Protein Homology	CDS	100	549	.	-	0	ID=cds-WP_001196065.1;Parent=gene-C9F05_RS21565;Dbxref=GenBank:WP_001196065.1;Name=WP_001196065.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134442.1;locus_tag=C9F05_RS21565;product=50S ribosomal protein L9;protein_id=WP_001196065.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	591	818	.	-	.	ID=gene-C9F05_RS21570;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=C9F05_RS21570;old_locus_tag=C9F05_22155
NZ_PYKE01000316.1	Protein Homology	CDS	591	818	.	-	0	ID=cds-WP_000135199.1;Parent=gene-C9F05_RS21570;Dbxref=GenBank:WP_000135199.1;Name=WP_000135199.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012986941.1;locus_tag=C9F05_RS21570;product=30S ribosomal protein S18;protein_id=WP_000135199.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	823	1137	.	-	.	ID=gene-C9F05_RS21575;Name=priB;gbkey=Gene;gene=priB;gene_biotype=protein_coding;locus_tag=C9F05_RS21575;old_locus_tag=C9F05_22160
NZ_PYKE01000316.1	Protein Homology	CDS	823	1137	.	-	0	ID=cds-WP_001519453.1;Parent=gene-C9F05_RS21575;Dbxref=GenBank:WP_001519453.1;Name=WP_001519453.1;Ontology_term=GO:0006260,GO:0003697,GO:0030894;gbkey=CDS;gene=priB;go_component=replisome|0030894||IEA;go_function=single-stranded DNA binding|0003697||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463253.1;locus_tag=C9F05_RS21575;product=primosomal replication protein N;protein_id=WP_001519453.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	1144	1539	.	-	.	ID=gene-C9F05_RS21580;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=C9F05_RS21580;old_locus_tag=C9F05_22165
NZ_PYKE01000316.1	Protein Homology	CDS	1144	1539	.	-	0	ID=cds-WP_001216673.1;Parent=gene-C9F05_RS21580;Dbxref=GenBank:WP_001216673.1;Name=WP_001216673.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456251.1;locus_tag=C9F05_RS21580;product=30S ribosomal protein S6;protein_id=WP_001216673.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	1926	2201	.	+	.	ID=gene-C9F05_RS21585;Name=yjfY;gbkey=Gene;gene=yjfY;gene_biotype=protein_coding;locus_tag=C9F05_RS21585;old_locus_tag=C9F05_22170
NZ_PYKE01000316.1	Protein Homology	CDS	1926	2201	.	+	0	ID=cds-WP_000466074.1;Parent=gene-C9F05_RS21585;Dbxref=GenBank:WP_000466074.1;Name=WP_000466074.1;gbkey=CDS;gene=yjfY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313202.1;locus_tag=C9F05_RS21585;product=DUF1471 family protein YjfY;protein_id=WP_000466074.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	2254	2811	.	-	.	ID=gene-C9F05_RS21590;Name=C9F05_RS21590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21590;old_locus_tag=C9F05_22175
NZ_PYKE01000316.1	Protein Homology	CDS	2254	2811	.	-	0	ID=cds-WP_000026294.1;Parent=gene-C9F05_RS21590;Dbxref=GenBank:WP_000026294.1;Name=WP_000026294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006911310.1;locus_tag=C9F05_RS21590;product=YagU family protein;protein_id=WP_000026294.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	2899	3585	.	-	.	ID=gene-C9F05_RS21595;Name=C9F05_RS21595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21595;old_locus_tag=C9F05_22180
NZ_PYKE01000316.1	Protein Homology	CDS	2899	3585	.	-	0	ID=cds-WP_001170771.1;Parent=gene-C9F05_RS21595;Dbxref=GenBank:WP_001170771.1;Name=WP_001170771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463249.1;locus_tag=C9F05_RS21595;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_001170771.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	3585	4439	.	-	.	ID=gene-C9F05_RS21600;Name=ulaE;gbkey=Gene;gene=ulaE;gene_biotype=protein_coding;locus_tag=C9F05_RS21600;old_locus_tag=C9F05_22185
NZ_PYKE01000316.1	Protein Homology	CDS	3585	4439	.	-	0	ID=cds-WP_000949530.1;Parent=gene-C9F05_RS21600;Dbxref=GenBank:WP_000949530.1;Name=WP_000949530.1;gbkey=CDS;gene=ulaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463248.1;locus_tag=C9F05_RS21600;product=L-ribulose-5-phosphate 3-epimerase UlaE;protein_id=WP_000949530.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	4449	5099	.	-	.	ID=gene-C9F05_RS21605;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=C9F05_RS21605;old_locus_tag=C9F05_22190
NZ_PYKE01000316.1	Protein Homology	CDS	4449	5099	.	-	0	ID=cds-WP_000056761.1;Parent=gene-C9F05_RS21605;Dbxref=GenBank:WP_000056761.1;Name=WP_000056761.1;gbkey=CDS;gene=ulaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463247.1;locus_tag=C9F05_RS21605;product=3-keto-L-gulonate-6-phosphate decarboxylase UlaD;protein_id=WP_000056761.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	5113	5577	.	-	.	ID=gene-C9F05_RS21610;Name=ulaC;gbkey=Gene;gene=ulaC;gene_biotype=protein_coding;locus_tag=C9F05_RS21610;old_locus_tag=C9F05_22195
NZ_PYKE01000316.1	Protein Homology	CDS	5113	5577	.	-	0	ID=cds-WP_000776531.1;Parent=gene-C9F05_RS21610;Dbxref=GenBank:WP_000776531.1;Name=WP_000776531.1;gbkey=CDS;gene=ulaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463246.1;locus_tag=C9F05_RS21610;product=PTS ascorbate transporter subunit IIA;protein_id=WP_000776531.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	5587	5892	.	-	.	ID=gene-C9F05_RS21615;Name=ulaB;gbkey=Gene;gene=ulaB;gene_biotype=protein_coding;locus_tag=C9F05_RS21615;old_locus_tag=C9F05_22200
NZ_PYKE01000316.1	Protein Homology	CDS	5587	5892	.	-	0	ID=cds-WP_000218362.1;Parent=gene-C9F05_RS21615;Dbxref=GenBank:WP_000218362.1;Name=WP_000218362.1;gbkey=CDS;gene=ulaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313197.1;locus_tag=C9F05_RS21615;product=PTS ascorbate transporter subunit IIB;protein_id=WP_000218362.1;transl_table=11
NZ_PYKE01000316.1	RefSeq	gene	5908	7305	.	-	.	ID=gene-C9F05_RS21620;Name=ulaA;gbkey=Gene;gene=ulaA;gene_biotype=protein_coding;locus_tag=C9F05_RS21620;old_locus_tag=C9F05_22205
NZ_PYKE01000316.1	Protein Homology	CDS	5908	7305	.	-	0	ID=cds-WP_000404876.1;Parent=gene-C9F05_RS21620;Dbxref=GenBank:WP_000404876.1;Name=WP_000404876.1;gbkey=CDS;gene=ulaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418614.4;locus_tag=C9F05_RS21620;product=PTS ascorbate transporter subunit IIC;protein_id=WP_000404876.1;transl_table=11
##sequence-region NZ_PYKE01000079.1 1 35495
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000079.1	RefSeq	region	1	35495	.	+	.	ID=NZ_PYKE01000079.1:1..35495;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000079.1	RefSeq	gene	30	1484	.	-	.	ID=gene-C9F05_RS05325;Name=xylB;gbkey=Gene;gene=xylB;gene_biotype=protein_coding;locus_tag=C9F05_RS05325;old_locus_tag=C9F05_05415
NZ_PYKE01000079.1	Protein Homology	CDS	30	1484	.	-	0	ID=cds-WP_000275326.1;Parent=gene-C9F05_RS05325;Dbxref=GenBank:WP_000275326.1;Name=WP_000275326.1;Ontology_term=GO:0005997,GO:0004856;gbkey=CDS;gene=xylB;go_function=D-xylulokinase activity|0004856||IEA;go_process=xylulose metabolic process|0005997||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462560.1;locus_tag=C9F05_RS05325;product=xylulokinase;protein_id=WP_000275326.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	1584	2906	.	-	.	ID=gene-C9F05_RS05330;Name=xylA;gbkey=Gene;gene=xylA;gene_biotype=protein_coding;locus_tag=C9F05_RS05330;old_locus_tag=C9F05_05420
NZ_PYKE01000079.1	Protein Homology	CDS	1584	2906	.	-	0	ID=cds-WP_001149561.1;Parent=gene-C9F05_RS05330;Dbxref=GenBank:WP_001149561.1;Name=WP_001149561.1;Ontology_term=GO:0042732,GO:0009045;gbkey=CDS;gene=xylA;go_function=xylose isomerase activity|0009045||IEA;go_process=D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462561.1;locus_tag=C9F05_RS05330;product=xylose isomerase;protein_id=WP_001149561.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	3269	4447	.	+	.	ID=gene-C9F05_RS05340;Name=xylR;gbkey=Gene;gene=xylR;gene_biotype=protein_coding;locus_tag=C9F05_RS05340;old_locus_tag=C9F05_05430
NZ_PYKE01000079.1	Protein Homology	CDS	3269	4447	.	+	0	ID=cds-WP_000459824.1;Parent=gene-C9F05_RS05340;Dbxref=GenBank:WP_000459824.1;Name=WP_000459824.1;Note=D-xylose enhances binding of XylR to the xyl promoter and activates transcription.;gbkey=CDS;gene=xylR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462562.1;locus_tag=C9F05_RS05340;product=D-xylose utilization transcriptional activator XylR;protein_id=WP_000459824.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	4508	5332	.	-	.	ID=gene-C9F05_RS05345;Name=C9F05_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05345;old_locus_tag=C9F05_05435
NZ_PYKE01000079.1	Protein Homology	CDS	4508	5332	.	-	0	ID=cds-WP_001575119.1;Parent=gene-C9F05_RS05345;Dbxref=GenBank:WP_001575119.1;Name=WP_001575119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462563.1;locus_tag=C9F05_RS05345;product=protein bax;protein_id=WP_001575119.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	5648	7675	.	+	.	ID=gene-C9F05_RS05350;Name=C9F05_RS05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05350;old_locus_tag=C9F05_05445
NZ_PYKE01000079.1	Protein Homology	CDS	5648	7675	.	+	0	ID=cds-WP_135370085.1;Parent=gene-C9F05_RS05350;Dbxref=GenBank:WP_135370085.1;Name=WP_135370085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462564.1;locus_tag=C9F05_RS05350;product=alpha-amylase;protein_id=WP_135370085.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	7849	9099	.	+	.	ID=gene-C9F05_RS05355;Name=avtA;gbkey=Gene;gene=avtA;gene_biotype=protein_coding;locus_tag=C9F05_RS05355;old_locus_tag=C9F05_05450
NZ_PYKE01000079.1	Protein Homology	CDS	7849	9099	.	+	0	ID=cds-WP_000144379.1;Parent=gene-C9F05_RS05355;Dbxref=GenBank:WP_000144379.1;Name=WP_000144379.1;gbkey=CDS;gene=avtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462565.1;locus_tag=C9F05_RS05355;product=valine--pyruvate transaminase;protein_id=WP_000144379.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	9136	9609	.	-	.	ID=gene-C9F05_RS05360;Name=C9F05_RS05360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05360;old_locus_tag=C9F05_05455
NZ_PYKE01000079.1	Protein Homology	CDS	9136	9609	.	-	0	ID=cds-WP_079986590.1;Parent=gene-C9F05_RS05360;Dbxref=GenBank:WP_079986590.1;Name=WP_079986590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462566.1;locus_tag=C9F05_RS05360;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_079986590.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	9726	10526	.	-	.	ID=gene-C9F05_RS05365;Name=yiaJ;gbkey=Gene;gene=yiaJ;gene_biotype=protein_coding;locus_tag=C9F05_RS05365;old_locus_tag=C9F05_05460
NZ_PYKE01000079.1	Protein Homology	CDS	9726	10526	.	-	0	ID=cds-WP_000081338.1;Parent=gene-C9F05_RS05365;Dbxref=GenBank:WP_000081338.1;Name=WP_000081338.1;gbkey=CDS;gene=yiaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462567.1;locus_tag=C9F05_RS05365;product=IclR family transcriptional regulator YiaJ;protein_id=WP_000081338.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	10756	11754	.	+	.	ID=gene-C9F05_RS05370;Name=yiaK;gbkey=Gene;gene=yiaK;gene_biotype=protein_coding;locus_tag=C9F05_RS05370;old_locus_tag=C9F05_05465
NZ_PYKE01000079.1	Protein Homology	CDS	10756	11754	.	+	0	ID=cds-WP_000861182.1;Parent=gene-C9F05_RS05370;Dbxref=GenBank:WP_000861182.1;Name=WP_000861182.1;Ontology_term=GO:0047559,GO:0070403;gbkey=CDS;gene=yiaK;go_function=3-dehydro-L-gulonate 2-dehydrogenase activity|0047559||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462568.1;locus_tag=C9F05_RS05370;product=3-dehydro-L-gulonate 2-dehydrogenase;protein_id=WP_000861182.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	11766	12230	.	+	.	ID=gene-C9F05_RS05375;Name=C9F05_RS05375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05375;old_locus_tag=C9F05_05470
NZ_PYKE01000079.1	Protein Homology	CDS	11766	12230	.	+	0	ID=cds-WP_000576102.1;Parent=gene-C9F05_RS05375;Dbxref=GenBank:WP_000576102.1;Name=WP_000576102.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462569.1;locus_tag=C9F05_RS05375;product=YhcH/YjgK/YiaL family protein;protein_id=WP_000576102.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	12254	13195	.	+	.	ID=gene-C9F05_RS05380;Name=C9F05_RS05380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05380;old_locus_tag=C9F05_05475
NZ_PYKE01000079.1	Protein Homology	CDS	12254	13195	.	+	0	ID=cds-WP_135370086.1;Parent=gene-C9F05_RS05380;Dbxref=GenBank:WP_135370086.1;Name=WP_135370086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017466038.1;locus_tag=C9F05_RS05380;product=DUF4862 family protein;protein_id=WP_135370086.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	13324	13797	.	+	.	ID=gene-C9F05_RS05385;Name=yiaM;gbkey=Gene;gene=yiaM;gene_biotype=protein_coding;locus_tag=C9F05_RS05385;old_locus_tag=C9F05_05480
NZ_PYKE01000079.1	Protein Homology	CDS	13324	13797	.	+	0	ID=cds-WP_000832316.1;Parent=gene-C9F05_RS05385;Dbxref=GenBank:WP_000832316.1;Name=WP_000832316.1;Ontology_term=GO:0031317;gbkey=CDS;gene=yiaM;go_component=tripartite ATP-independent periplasmic transporter complex|0031317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462571.1;locus_tag=C9F05_RS05385;product=2%2C3-diketo-L-gulonate TRAP transporter small permease YiaM;protein_id=WP_000832316.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	13800	15077	.	+	.	ID=gene-C9F05_RS05390;Name=yiaN;gbkey=Gene;gene=yiaN;gene_biotype=protein_coding;locus_tag=C9F05_RS05390;old_locus_tag=C9F05_05485
NZ_PYKE01000079.1	Protein Homology	CDS	13800	15077	.	+	0	ID=cds-WP_000301822.1;Parent=gene-C9F05_RS05390;Dbxref=GenBank:WP_000301822.1;Name=WP_000301822.1;Ontology_term=GO:0031317;gbkey=CDS;gene=yiaN;go_component=tripartite ATP-independent periplasmic transporter complex|0031317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462572.1;locus_tag=C9F05_RS05390;product=2%2C3-diketo-L-gulonate TRAP transporter large permease YiaN;protein_id=WP_000301822.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	15089	16075	.	+	.	ID=gene-C9F05_RS05395;Name=yiaO;gbkey=Gene;gene=yiaO;gene_biotype=protein_coding;locus_tag=C9F05_RS05395;old_locus_tag=C9F05_05490
NZ_PYKE01000079.1	Protein Homology	CDS	15089	16075	.	+	0	ID=cds-WP_000766341.1;Parent=gene-C9F05_RS05395;Dbxref=GenBank:WP_000766341.1;Name=WP_000766341.1;gbkey=CDS;gene=yiaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462573.1;locus_tag=C9F05_RS05395;product=2%2C3-diketo-L-gulonate TRAP transporter substrate-binding protein YiaO;protein_id=WP_000766341.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	16079	17575	.	+	.	ID=gene-C9F05_RS05400;Name=C9F05_RS05400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05400;old_locus_tag=C9F05_05495
NZ_PYKE01000079.1	Protein Homology	CDS	16079	17575	.	+	0	ID=cds-WP_000074085.1;Parent=gene-C9F05_RS05400;Dbxref=GenBank:WP_000074085.1;Name=WP_000074085.1;Ontology_term=GO:0016310,GO:0005524,GO:0019200;gbkey=CDS;go_function=ATP binding|0005524||IEA,carbohydrate kinase activity|0019200||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462574.1;locus_tag=C9F05_RS05400;product=FGGY-family carbohydrate kinase;protein_id=WP_000074085.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	17572	18234	.	+	.	ID=gene-C9F05_RS05405;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=C9F05_RS05405;old_locus_tag=C9F05_05500
NZ_PYKE01000079.1	Protein Homology	CDS	17572	18234	.	+	0	ID=cds-WP_135370087.1;Parent=gene-C9F05_RS05405;Dbxref=GenBank:WP_135370087.1;Name=WP_135370087.1;gbkey=CDS;gene=ulaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462575.1;locus_tag=C9F05_RS05405;product=3-keto-L-gulonate-6-phosphate decarboxylase UlaD;protein_id=WP_135370087.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	18227	19087	.	+	.	ID=gene-C9F05_RS05410;Name=C9F05_RS05410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05410;old_locus_tag=C9F05_05505
NZ_PYKE01000079.1	Protein Homology	CDS	18227	19087	.	+	0	ID=cds-WP_135370088.1;Parent=gene-C9F05_RS05410;Dbxref=GenBank:WP_135370088.1;Name=WP_135370088.1;Ontology_term=GO:0005975,GO:0016861;gbkey=CDS;go_function=intramolecular oxidoreductase activity%2C interconverting aldoses and ketoses|0016861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462576.1;locus_tag=C9F05_RS05410;product=L-ribulose-5-phosphate 3-epimerase;protein_id=WP_135370088.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	19081	19776	.	+	.	ID=gene-C9F05_RS05415;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=C9F05_RS05415;old_locus_tag=C9F05_05510
NZ_PYKE01000079.1	Protein Homology	CDS	19081	19776	.	+	0	ID=cds-WP_017466036.1;Parent=gene-C9F05_RS05415;Dbxref=GenBank:WP_017466036.1;Name=WP_017466036.1;Ontology_term=GO:0019568,GO:0008270,GO:0008742;gbkey=CDS;gene=araD;go_function=zinc ion binding|0008270||IEA,L-ribulose-phosphate 4-epimerase activity|0008742||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462577.1;locus_tag=C9F05_RS05415;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_017466036.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	19937	20752	.	-	.	ID=gene-C9F05_RS05420;Name=C9F05_RS05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05420;old_locus_tag=C9F05_05515
NZ_PYKE01000079.1	Protein Homology	CDS	19937	20752	.	-	0	ID=cds-WP_000891816.1;Parent=gene-C9F05_RS05420;Dbxref=GenBank:WP_000891816.1;Name=WP_000891816.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462578.1;locus_tag=C9F05_RS05420;product=AraC family transcriptional regulator;protein_id=WP_000891816.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	21016	22971	.	+	.	ID=gene-C9F05_RS05425;Name=C9F05_RS05425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05425;old_locus_tag=C9F05_05520
NZ_PYKE01000079.1	Protein Homology	CDS	21016	22971	.	+	0	ID=cds-WP_135370089.1;Parent=gene-C9F05_RS05425;Dbxref=GenBank:WP_135370089.1;Name=WP_135370089.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462579.1;locus_tag=C9F05_RS05425;product=glycoside hydrolase family 127 protein;protein_id=WP_135370089.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	23201	24739	.	-	.	ID=gene-C9F05_RS05430;Name=aldB;gbkey=Gene;gene=aldB;gene_biotype=protein_coding;locus_tag=C9F05_RS05430;old_locus_tag=C9F05_05525
NZ_PYKE01000079.1	Protein Homology	CDS	23201	24739	.	-	0	ID=cds-WP_135370090.1;Parent=gene-C9F05_RS05430;Dbxref=GenBank:WP_135370090.1;Name=WP_135370090.1;gbkey=CDS;gene=aldB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462580.1;locus_tag=C9F05_RS05430;product=aldehyde dehydrogenase AldB;protein_id=WP_135370090.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	24908	25789	.	+	.	ID=gene-C9F05_RS05435;Name=C9F05_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05435;old_locus_tag=C9F05_05530
NZ_PYKE01000079.1	Protein Homology	CDS	24908	25789	.	+	0	ID=cds-WP_135370091.1;Parent=gene-C9F05_RS05435;Dbxref=GenBank:WP_135370091.1;Name=WP_135370091.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002954677.1;locus_tag=C9F05_RS05435;product=ROK family protein;protein_id=WP_135370091.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	26037	27887	.	-	.	ID=gene-C9F05_RS05440;Name=selB;gbkey=Gene;gene=selB;gene_biotype=protein_coding;locus_tag=C9F05_RS05440;old_locus_tag=C9F05_05535
NZ_PYKE01000079.1	Protein Homology	CDS	26037	27887	.	-	0	ID=cds-WP_135370092.1;Parent=gene-C9F05_RS05440;Dbxref=GenBank:WP_135370092.1;Name=WP_135370092.1;Ontology_term=GO:0001514,GO:0003723,GO:0003746,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=selB;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,translation elongation factor activity|0003746||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=selenocysteine incorporation|0001514||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462582.1;locus_tag=C9F05_RS05440;product=selenocysteine-specific translation elongation factor;protein_id=WP_135370092.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	27884	29275	.	-	.	ID=gene-C9F05_RS05445;Name=selA;gbkey=Gene;gene=selA;gene_biotype=protein_coding;locus_tag=C9F05_RS05445;old_locus_tag=C9F05_05540
NZ_PYKE01000079.1	Protein Homology	CDS	27884	29275	.	-	0	ID=cds-WP_000200188.1;Parent=gene-C9F05_RS05445;Dbxref=GenBank:WP_000200188.1;Name=WP_000200188.1;Ontology_term=GO:0001514,GO:0004125,GO:0005737;gbkey=CDS;gene=selA;go_component=cytoplasm|0005737||IEA;go_function=L-seryl-tRNA(Sec) selenium transferase activity|0004125||IEA;go_process=selenocysteine incorporation|0001514||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462583.1;locus_tag=C9F05_RS05445;product=L-seryl-tRNA(Sec) selenium transferase;protein_id=WP_000200188.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	29374	29982	.	-	.	ID=gene-C9F05_RS05450;Name=C9F05_RS05450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05450;old_locus_tag=C9F05_05545
NZ_PYKE01000079.1	Protein Homology	CDS	29374	29982	.	-	0	ID=cds-WP_000766688.1;Parent=gene-C9F05_RS05450;Dbxref=GenBank:WP_000766688.1;Name=WP_000766688.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462584.1;locus_tag=C9F05_RS05450;product=glutathione S-transferase;protein_id=WP_000766688.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	30458	32374	.	+	.	ID=gene-C9F05_RS05455;Name=mtlA;gbkey=Gene;gene=mtlA;gene_biotype=protein_coding;locus_tag=C9F05_RS05455;old_locus_tag=C9F05_05550
NZ_PYKE01000079.1	Protein Homology	CDS	30458	32374	.	+	0	ID=cds-WP_000093287.1;Parent=gene-C9F05_RS05455;Dbxref=GenBank:WP_000093287.1;Name=WP_000093287.1;gbkey=CDS;gene=mtlA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462585.1;locus_tag=C9F05_RS05455;product=PTS mannitol transporter subunit IICBA;protein_id=WP_000093287.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	32605	33753	.	+	.	ID=gene-C9F05_RS05460;Name=mtlD;gbkey=Gene;gene=mtlD;gene_biotype=protein_coding;locus_tag=C9F05_RS05460;old_locus_tag=C9F05_05555
NZ_PYKE01000079.1	Protein Homology	CDS	32605	33753	.	+	0	ID=cds-WP_000645397.1;Parent=gene-C9F05_RS05460;Dbxref=GenBank:WP_000645397.1;Name=WP_000645397.1;Ontology_term=GO:0019594,GO:0008926;gbkey=CDS;gene=mtlD;go_function=mannitol-1-phosphate 5-dehydrogenase activity|0008926||IEA;go_process=mannitol metabolic process|0019594||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462586.1;locus_tag=C9F05_RS05460;product=mannitol-1-phosphate 5-dehydrogenase;protein_id=WP_000645397.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	33750	34340	.	+	.	ID=gene-C9F05_RS05465;Name=mtlR;gbkey=Gene;gene=mtlR;gene_biotype=protein_coding;locus_tag=C9F05_RS05465;old_locus_tag=C9F05_05560
NZ_PYKE01000079.1	Protein Homology	CDS	33750	34340	.	+	0	ID=cds-WP_000193201.1;Parent=gene-C9F05_RS05465;Dbxref=GenBank:WP_000193201.1;Name=WP_000193201.1;gbkey=CDS;gene=mtlR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462587.1;locus_tag=C9F05_RS05465;product=mannitol operon repressor MtlR;protein_id=WP_000193201.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	34350	34559	.	-	.	ID=gene-C9F05_RS05470;Name=C9F05_RS05470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05470;old_locus_tag=C9F05_05565
NZ_PYKE01000079.1	Protein Homology	CDS	34350	34559	.	-	0	ID=cds-WP_001062558.1;Parent=gene-C9F05_RS05470;Dbxref=GenBank:WP_001062558.1;Name=WP_001062558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462588.1;locus_tag=C9F05_RS05470;product=hypothetical protein;protein_id=WP_001062558.1;transl_table=11
NZ_PYKE01000079.1	RefSeq	gene	34850	35212	.	+	.	ID=gene-C9F05_RS05475;Name=C9F05_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05475;old_locus_tag=C9F05_05570
NZ_PYKE01000079.1	Protein Homology	CDS	34850	35212	.	+	0	ID=cds-WP_000665687.1;Parent=gene-C9F05_RS05475;Dbxref=GenBank:WP_000665687.1;Name=WP_000665687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462589.1;locus_tag=C9F05_RS05475;product=YibL family ribosome-associated protein;protein_id=WP_000665687.1;transl_table=11
##sequence-region NZ_PYKE01000080.1 1 7345
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000080.1	RefSeq	region	1	7345	.	+	.	ID=NZ_PYKE01000080.1:1..7345;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000080.1	RefSeq	gene	1	772	.	+	.	ID=gene-C9F05_RS05480;Name=C9F05_RS05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05480;old_locus_tag=C9F05_05575;partial=true;start_range=.,1
NZ_PYKE01000080.1	Protein Homology	CDS	1	772	.	+	1	ID=cds-WP_135370093.1;Parent=gene-C9F05_RS05480;Dbxref=GenBank:WP_135370093.1;Name=WP_135370093.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459433.1;locus_tag=C9F05_RS05480;partial=true;product=tetratricopeptide repeat protein;protein_id=WP_135370093.1;start_range=.,1;transl_table=11
NZ_PYKE01000080.1	RefSeq	gene	784	2253	.	+	.	ID=gene-C9F05_RS05485;Name=C9F05_RS05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05485;old_locus_tag=C9F05_05580
NZ_PYKE01000080.1	Protein Homology	CDS	784	2253	.	+	0	ID=cds-WP_135370094.1;Parent=gene-C9F05_RS05485;Dbxref=GenBank:WP_135370094.1;Name=WP_135370094.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524005.1;locus_tag=C9F05_RS05485;product=SEL1-like repeat protein;protein_id=WP_135370094.1;transl_table=11
NZ_PYKE01000080.1	RefSeq	gene	2301	3191	.	-	.	ID=gene-C9F05_RS05490;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=C9F05_RS05490;old_locus_tag=C9F05_05585
NZ_PYKE01000080.1	Protein Homology	CDS	2301	3191	.	-	0	ID=cds-WP_000971352.1;Parent=gene-C9F05_RS05490;Dbxref=GenBank:WP_000971352.1;Name=WP_000971352.1;Ontology_term=GO:0048034,GO:0008495,GO:0016020;gbkey=CDS;gene=cyoE;go_component=membrane|0016020||IEA;go_function=protoheme IX farnesyltransferase activity|0008495||IEA;go_process=heme O biosynthetic process|0048034||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459435.1;locus_tag=C9F05_RS05490;product=heme o synthase;protein_id=WP_000971352.1;transl_table=11
NZ_PYKE01000080.1	RefSeq	gene	3203	3532	.	-	.	ID=gene-C9F05_RS05495;Name=C9F05_RS05495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05495;old_locus_tag=C9F05_05590
NZ_PYKE01000080.1	Protein Homology	CDS	3203	3532	.	-	0	ID=cds-WP_000019878.1;Parent=gene-C9F05_RS05495;Dbxref=GenBank:WP_000019878.1;Name=WP_000019878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459436.1;locus_tag=C9F05_RS05495;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=WP_000019878.1;transl_table=11
NZ_PYKE01000080.1	RefSeq	gene	3532	4146	.	-	.	ID=gene-C9F05_RS05500;Name=C9F05_RS05500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05500;old_locus_tag=C9F05_05595
NZ_PYKE01000080.1	Protein Homology	CDS	3532	4146	.	-	0	ID=cds-WP_000179833.1;Parent=gene-C9F05_RS05500;Dbxref=GenBank:WP_000179833.1;Name=WP_000179833.1;Ontology_term=GO:0022904,GO:0004129;gbkey=CDS;go_function=cytochrome-c oxidase activity|0004129||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459437.1;locus_tag=C9F05_RS05500;product=cytochrome o ubiquinol oxidase subunit III;protein_id=WP_000179833.1;transl_table=11
NZ_PYKE01000080.1	RefSeq	gene	4136	6127	.	-	.	ID=gene-C9F05_RS05505;Name=cyoB;gbkey=Gene;gene=cyoB;gene_biotype=protein_coding;locus_tag=C9F05_RS05505;old_locus_tag=C9F05_05600
NZ_PYKE01000080.1	Protein Homology	CDS	4136	6127	.	-	0	ID=cds-WP_000467158.1;Parent=gene-C9F05_RS05505;Dbxref=GenBank:WP_000467158.1;Name=WP_000467158.1;Ontology_term=GO:0004129;gbkey=CDS;gene=cyoB;go_function=cytochrome-c oxidase activity|0004129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002444673.1;locus_tag=C9F05_RS05505;product=cytochrome o ubiquinol oxidase subunit I;protein_id=WP_000467158.1;transl_table=11
NZ_PYKE01000080.1	RefSeq	gene	6138	7094	.	-	.	ID=gene-C9F05_RS05510;Name=cyoA;gbkey=Gene;gene=cyoA;gene_biotype=protein_coding;locus_tag=C9F05_RS05510;old_locus_tag=C9F05_05605
NZ_PYKE01000080.1	Protein Homology	CDS	6138	7094	.	-	0	ID=cds-WP_001239448.1;Parent=gene-C9F05_RS05510;Dbxref=GenBank:WP_001239448.1;Name=WP_001239448.1;Ontology_term=GO:0022900,GO:0004129;gbkey=CDS;gene=cyoA;go_function=cytochrome-c oxidase activity|0004129||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459439.1;locus_tag=C9F05_RS05510;product=cytochrome o ubiquinol oxidase subunit II;protein_id=WP_001239448.1;transl_table=11
##sequence-region NZ_PYKE01000034.1 1 7287
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000034.1	RefSeq	region	1	7287	.	+	.	ID=NZ_PYKE01000034.1:1..7287;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000034.1	RefSeq	gene	83	793	.	+	.	ID=gene-C9F05_RS02000;Name=C9F05_RS02000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02000;old_locus_tag=C9F05_02040
NZ_PYKE01000034.1	Protein Homology	CDS	83	793	.	+	0	ID=cds-WP_000190524.1;Parent=gene-C9F05_RS02000;Dbxref=GenBank:WP_000190524.1;Name=WP_000190524.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462548.1;locus_tag=C9F05_RS02000;product=DUF3053 domain-containing protein;protein_id=WP_000190524.1;transl_table=11
NZ_PYKE01000034.1	RefSeq	gene	843	1817	.	-	.	ID=gene-C9F05_RS02005;Name=ghrB;gbkey=Gene;gene=ghrB;gene_biotype=protein_coding;locus_tag=C9F05_RS02005;old_locus_tag=C9F05_02045
NZ_PYKE01000034.1	Protein Homology	CDS	843	1817	.	-	0	ID=cds-WP_000804681.1;Parent=gene-C9F05_RS02005;Dbxref=GenBank:WP_000804681.1;Name=WP_000804681.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=ghrB;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462547.1;locus_tag=C9F05_RS02005;product=glyoxylate/hydroxypyruvate reductase GhrB;protein_id=WP_000804681.1;transl_table=11
NZ_PYKE01000034.1	RefSeq	gene	2036	2698	.	-	.	ID=gene-C9F05_RS02010;Name=C9F05_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02010;old_locus_tag=C9F05_02050
NZ_PYKE01000034.1	Protein Homology	CDS	2036	2698	.	-	0	ID=cds-WP_000747548.1;Parent=gene-C9F05_RS02010;Dbxref=GenBank:WP_000747548.1;Name=WP_000747548.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462546.1;locus_tag=C9F05_RS02010;product=OmpA family lipoprotein;protein_id=WP_000747548.1;transl_table=11
NZ_PYKE01000034.1	RefSeq	gene	2851	5184	.	+	.	ID=gene-C9F05_RS02015;Name=C9F05_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02015;old_locus_tag=C9F05_02055
NZ_PYKE01000034.1	Protein Homology	CDS	2851	5184	.	+	0	ID=cds-WP_135369980.1;Parent=gene-C9F05_RS02015;Dbxref=GenBank:WP_135369980.1;Name=WP_135369980.1;Ontology_term=GO:0016491,GO:0043546;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462545.1;locus_tag=C9F05_RS02015;product=molybdopterin guanine dinucleotide-containing S/N-oxide reductase;protein_id=WP_135369980.1;transl_table=11
NZ_PYKE01000034.1	RefSeq	gene	5153	5593	.	-	.	ID=gene-C9F05_RS02020;Name=C9F05_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02020;old_locus_tag=C9F05_02060
NZ_PYKE01000034.1	Protein Homology	CDS	5153	5593	.	-	0	ID=cds-WP_000619902.1;Parent=gene-C9F05_RS02020;Dbxref=GenBank:WP_000619902.1;Name=WP_000619902.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462544.1;locus_tag=C9F05_RS02020;product=N-acetyltransferase;protein_id=WP_000619902.1;transl_table=11
NZ_PYKE01000034.1	RefSeq	gene	5571	6152	.	-	.	ID=gene-C9F05_RS02025;Name=tag;gbkey=Gene;gene=tag;gene_biotype=protein_coding;locus_tag=C9F05_RS02025;old_locus_tag=C9F05_02065
NZ_PYKE01000034.1	Protein Homology	CDS	5571	6152	.	-	0	ID=cds-WP_001188405.1;Parent=gene-C9F05_RS02025;Dbxref=GenBank:WP_001188405.1;Name=WP_001188405.1;gbkey=CDS;gene=tag;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462543.1;locus_tag=C9F05_RS02025;product=DNA-3-methyladenine glycosylase I;protein_id=WP_001188405.1;transl_table=11
NZ_PYKE01000034.1	RefSeq	gene	6309	7013	.	+	.	ID=gene-C9F05_RS02030;Name=C9F05_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02030;old_locus_tag=C9F05_02070
NZ_PYKE01000034.1	Protein Homology	CDS	6309	7013	.	+	0	ID=cds-WP_080230360.1;Parent=gene-C9F05_RS02030;Dbxref=GenBank:WP_080230360.1;Name=WP_080230360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462542.1;locus_tag=C9F05_RS02030;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_080230360.1;transl_table=11
##sequence-region NZ_PYKE01000179.1 1 7205
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000179.1	RefSeq	region	1	7205	.	+	.	ID=NZ_PYKE01000179.1:1..7205;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000179.1	RefSeq	gene	1	322	.	+	.	ID=gene-C9F05_RS12125;Name=C9F05_RS12125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12125;old_locus_tag=C9F05_12470;partial=true;start_range=.,1
NZ_PYKE01000179.1	Protein Homology	CDS	1	322	.	+	1	ID=cds-WP_135370316.1;Parent=gene-C9F05_RS12125;Dbxref=GenBank:WP_135370316.1;Name=WP_135370316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463231.1;locus_tag=C9F05_RS12125;partial=true;product=YjfI family protein;protein_id=WP_135370316.1;start_range=.,1;transl_table=11
NZ_PYKE01000179.1	RefSeq	gene	337	1035	.	+	.	ID=gene-C9F05_RS12130;Name=C9F05_RS12130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12130;old_locus_tag=C9F05_12475
NZ_PYKE01000179.1	Protein Homology	CDS	337	1035	.	+	0	ID=cds-WP_000511981.1;Parent=gene-C9F05_RS12130;Dbxref=GenBank:WP_000511981.1;Name=WP_000511981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463232.1;locus_tag=C9F05_RS12130;product=PspA/IM30 family protein;protein_id=WP_000511981.1;transl_table=11
NZ_PYKE01000179.1	RefSeq	pseudogene	1035	1136	.	+	.	ID=gene-C9F05_RS23830;Name=C9F05_RS23830;end_range=1136,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23830;partial=true;pseudo=true
NZ_PYKE01000179.1	Protein Homology	CDS	1035	1136	.	+	0	ID=cds-C9F05_RS23830;Parent=gene-C9F05_RS23830;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1136,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463233.1;locus_tag=C9F05_RS23830;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000179.1	RefSeq	gene	1259	1942	.	+	.	ID=gene-C9F05_RS12135;Name=C9F05_RS12135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12135;old_locus_tag=C9F05_12480
NZ_PYKE01000179.1	Protein Homology	CDS	1259	1942	.	+	0	ID=cds-WP_000090294.1;Parent=gene-C9F05_RS12135;Dbxref=GenBank:WP_000090294.1;Name=WP_000090294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463234.3;locus_tag=C9F05_RS12135;product=YjfK family protein;protein_id=WP_000090294.1;transl_table=11
NZ_PYKE01000179.1	RefSeq	gene	1960	2358	.	+	.	ID=gene-C9F05_RS12140;Name=C9F05_RS12140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12140;old_locus_tag=C9F05_12485
NZ_PYKE01000179.1	Protein Homology	CDS	1960	2358	.	+	0	ID=cds-WP_000547737.1;Parent=gene-C9F05_RS12140;Dbxref=GenBank:WP_000547737.1;Name=WP_000547737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463235.1;locus_tag=C9F05_RS12140;product=DUF350 domain-containing protein;protein_id=WP_000547737.1;transl_table=11
NZ_PYKE01000179.1	RefSeq	gene	2368	3006	.	+	.	ID=gene-C9F05_RS12145;Name=C9F05_RS12145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12145;old_locus_tag=C9F05_12490
NZ_PYKE01000179.1	Protein Homology	CDS	2368	3006	.	+	0	ID=cds-WP_135370317.1;Parent=gene-C9F05_RS12145;Dbxref=GenBank:WP_135370317.1;Name=WP_135370317.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463236.1;locus_tag=C9F05_RS12145;product=DUF1190 domain-containing protein;protein_id=WP_135370317.1;transl_table=11
NZ_PYKE01000179.1	RefSeq	gene	3009	4172	.	+	.	ID=gene-C9F05_RS12150;Name=C9F05_RS12150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12150;old_locus_tag=C9F05_12495
NZ_PYKE01000179.1	Protein Homology	CDS	3009	4172	.	+	0	ID=cds-WP_000943948.1;Parent=gene-C9F05_RS12150;Dbxref=GenBank:WP_000943948.1;Name=WP_000943948.1;Ontology_term=GO:0005524,GO:0016874,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,ligase activity|0016874||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463237.1;locus_tag=C9F05_RS12150;product=glutathionylspermidine synthase family protein;protein_id=WP_000943948.1;transl_table=11
NZ_PYKE01000179.1	RefSeq	gene	4257	5879	.	+	.	ID=gene-C9F05_RS12155;Name=C9F05_RS12155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12155;old_locus_tag=C9F05_12500
NZ_PYKE01000179.1	Protein Homology	CDS	4257	5879	.	+	0	ID=cds-WP_000118979.1;Parent=gene-C9F05_RS12155;Dbxref=GenBank:WP_000118979.1;Name=WP_000118979.1;Ontology_term=GO:0003995;gbkey=CDS;go_function=acyl-CoA dehydrogenase activity|0003995||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463238.3;locus_tag=C9F05_RS12155;product=isovaleryl-CoA dehydrogenase;protein_id=WP_000118979.1;transl_table=11
NZ_PYKE01000179.1	RefSeq	gene	5924	6199	.	-	.	ID=gene-C9F05_RS12160;Name=yjfN;gbkey=Gene;gene=yjfN;gene_biotype=protein_coding;locus_tag=C9F05_RS12160;old_locus_tag=C9F05_12505
NZ_PYKE01000179.1	Protein Homology	CDS	5924	6199	.	-	0	ID=cds-WP_001518964.1;Parent=gene-C9F05_RS12160;Dbxref=GenBank:WP_001518964.1;Name=WP_001518964.1;gbkey=CDS;gene=yjfN;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134428.1;locus_tag=C9F05_RS12160;product=DUF1471 family protease activator YjfN;protein_id=WP_001518964.1;transl_table=11
NZ_PYKE01000179.1	RefSeq	gene	6330	6659	.	-	.	ID=gene-C9F05_RS12165;Name=bsmA;gbkey=Gene;gene=bsmA;gene_biotype=protein_coding;locus_tag=C9F05_RS12165;old_locus_tag=C9F05_12510
NZ_PYKE01000179.1	Protein Homology	CDS	6330	6659	.	-	0	ID=cds-WP_080169957.1;Parent=gene-C9F05_RS12165;Dbxref=GenBank:WP_080169957.1;Name=WP_080169957.1;gbkey=CDS;gene=bsmA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463240.1;locus_tag=C9F05_RS12165;product=biofilm peroxide resistance protein BsmA;protein_id=WP_080169957.1;transl_table=11
NZ_PYKE01000179.1	RefSeq	gene	6843	7205	.	+	.	ID=gene-C9F05_RS12170;Name=yjfP;end_range=7205,.;gbkey=Gene;gene=yjfP;gene_biotype=protein_coding;locus_tag=C9F05_RS12170;old_locus_tag=C9F05_12515;partial=true
NZ_PYKE01000179.1	Protein Homology	CDS	6843	7205	.	+	0	ID=cds-WP_048661866.1;Parent=gene-C9F05_RS12170;Dbxref=GenBank:WP_048661866.1;Name=WP_048661866.1;Ontology_term=GO:0006508,GO:0008236;end_range=7205,.;gbkey=CDS;gene=yjfP;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463241.1;locus_tag=C9F05_RS12170;partial=true;product=esterase;protein_id=WP_048661866.1;transl_table=11
##sequence-region NZ_PYKE01000242.1 1 35180
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000242.1	RefSeq	region	1	35180	.	+	.	ID=NZ_PYKE01000242.1:1..35180;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000242.1	RefSeq	gene	223	1434	.	+	.	ID=gene-C9F05_RS15530;Name=rlmI;gbkey=Gene;gene=rlmI;gene_biotype=protein_coding;locus_tag=C9F05_RS15530;old_locus_tag=C9F05_15965
NZ_PYKE01000242.1	Protein Homology	CDS	223	1434	.	+	0	ID=cds-WP_000140480.1;Parent=gene-C9F05_RS15530;Dbxref=GenBank:WP_000140480.1;Name=WP_000140480.1;Ontology_term=GO:0003723,GO:0008649;gbkey=CDS;gene=rlmI;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460054.1;locus_tag=C9F05_RS15530;product=23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;protein_id=WP_000140480.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	1492	1809	.	+	.	ID=gene-C9F05_RS15535;Name=hspQ;gbkey=Gene;gene=hspQ;gene_biotype=protein_coding;locus_tag=C9F05_RS15535;old_locus_tag=C9F05_15970
NZ_PYKE01000242.1	Protein Homology	CDS	1492	1809	.	+	0	ID=cds-WP_000561983.1;Parent=gene-C9F05_RS15535;Dbxref=GenBank:WP_000561983.1;Name=WP_000561983.1;gbkey=CDS;gene=hspQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123508.1;locus_tag=C9F05_RS15535;product=heat shock protein HspQ;protein_id=WP_000561983.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	1854	2267	.	-	.	ID=gene-C9F05_RS15540;Name=C9F05_RS15540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15540;old_locus_tag=C9F05_15975
NZ_PYKE01000242.1	Protein Homology	CDS	1854	2267	.	-	0	ID=cds-WP_001537782.1;Parent=gene-C9F05_RS15540;Dbxref=GenBank:WP_001537782.1;Name=WP_001537782.1;Ontology_term=GO:0120225;gbkey=CDS;go_function=coenzyme A binding|0120225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309076.1;locus_tag=C9F05_RS15540;product=CoA-binding protein;protein_id=WP_001537782.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	2441	3103	.	+	.	ID=gene-C9F05_RS15545;Name=C9F05_RS15545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15545;old_locus_tag=C9F05_15980
NZ_PYKE01000242.1	Protein Homology	CDS	2441	3103	.	+	0	ID=cds-WP_023201783.1;Parent=gene-C9F05_RS15545;Dbxref=GenBank:WP_023201783.1;Name=WP_023201783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460051.1;locus_tag=C9F05_RS15545;product=DUF2057 family protein;protein_id=WP_023201783.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	3198	3656	.	+	.	ID=gene-C9F05_RS15550;Name=mgsA;gbkey=Gene;gene=mgsA;gene_biotype=protein_coding;locus_tag=C9F05_RS15550;old_locus_tag=C9F05_15985
NZ_PYKE01000242.1	Protein Homology	CDS	3198	3656	.	+	0	ID=cds-WP_000424187.1;Parent=gene-C9F05_RS15550;Dbxref=GenBank:WP_000424187.1;Name=WP_000424187.1;Ontology_term=GO:0006007,GO:0019242,GO:0008929;gbkey=CDS;gene=mgsA;go_function=methylglyoxal synthase activity|0008929||IEA;go_process=glucose catabolic process|0006007||IEA,methylglyoxal biosynthetic process|0019242||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460050.1;locus_tag=C9F05_RS15550;product=methylglyoxal synthase;protein_id=WP_000424187.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	3692	5746	.	-	.	ID=gene-C9F05_RS15555;Name=helD;gbkey=Gene;gene=helD;gene_biotype=protein_coding;locus_tag=C9F05_RS15555;old_locus_tag=C9F05_15990
NZ_PYKE01000242.1	Protein Homology	CDS	3692	5746	.	-	0	ID=cds-WP_135370441.1;Parent=gene-C9F05_RS15555;Dbxref=GenBank:WP_135370441.1;Name=WP_135370441.1;Ontology_term=GO:0003677,GO:0003678,GO:0005524;gbkey=CDS;gene=helD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460049.1;locus_tag=C9F05_RS15555;product=DNA helicase IV;protein_id=WP_135370441.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	5870	6316	.	+	.	ID=gene-C9F05_RS15560;Name=C9F05_RS15560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15560;old_locus_tag=C9F05_15995
NZ_PYKE01000242.1	Protein Homology	CDS	5870	6316	.	+	0	ID=cds-WP_001261222.1;Parent=gene-C9F05_RS15560;Dbxref=GenBank:WP_001261222.1;Name=WP_001261222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460048.1;locus_tag=C9F05_RS15560;product=YccF domain-containing protein;protein_id=WP_001261222.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	6335	8488	.	+	.	ID=gene-C9F05_RS15565;Name=yccS;gbkey=Gene;gene=yccS;gene_biotype=protein_coding;locus_tag=C9F05_RS15565;old_locus_tag=C9F05_16000
NZ_PYKE01000242.1	Protein Homology	CDS	6335	8488	.	+	0	ID=cds-WP_001726973.1;Parent=gene-C9F05_RS15565;Dbxref=GenBank:WP_001726973.1;Name=WP_001726973.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yccS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460047.1;locus_tag=C9F05_RS15565;product=YccS family putative transporter;protein_id=WP_001726973.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	8475	9080	.	-	.	ID=gene-C9F05_RS15570;Name=C9F05_RS15570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15570;old_locus_tag=C9F05_16005
NZ_PYKE01000242.1	Protein Homology	CDS	8475	9080	.	-	0	ID=cds-WP_001202375.1;Parent=gene-C9F05_RS15570;Dbxref=GenBank:WP_001202375.1;Name=WP_001202375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460046.1;locus_tag=C9F05_RS15570;product=TfoX/Sxy family DNA transformation protein;protein_id=WP_001202375.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	9297	9806	.	+	.	ID=gene-C9F05_RS15575;Name=sulA;gbkey=Gene;gene=sulA;gene_biotype=protein_coding;locus_tag=C9F05_RS15575;old_locus_tag=C9F05_16010
NZ_PYKE01000242.1	Protein Homology	CDS	9297	9806	.	+	0	ID=cds-WP_000288732.1;Parent=gene-C9F05_RS15575;Dbxref=GenBank:WP_000288732.1;Name=WP_000288732.1;Ontology_term=GO:0009432,GO:0051782,GO:0005515;gbkey=CDS;gene=sulA;go_function=protein binding|0005515||IEA;go_process=SOS response|0009432||IEA,negative regulation of cell division|0051782||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460045.1;locus_tag=C9F05_RS15575;product=SOS-induced cell division inhibitor SulA;protein_id=WP_000288732.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	10163	11215	.	+	.	ID=gene-C9F05_RS15580;Name=ompA;gbkey=Gene;gene=ompA;gene_biotype=protein_coding;locus_tag=C9F05_RS15580;old_locus_tag=C9F05_16015
NZ_PYKE01000242.1	Protein Homology	CDS	10163	11215	.	+	0	ID=cds-WP_023259507.1;Parent=gene-C9F05_RS15580;Dbxref=GenBank:WP_023259507.1;Name=WP_023259507.1;gbkey=CDS;gene=ompA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460044.1;locus_tag=C9F05_RS15580;product=porin OmpA;protein_id=WP_023259507.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	11287	11739	.	-	.	ID=gene-C9F05_RS15585;Name=matP;gbkey=Gene;gene=matP;gene_biotype=protein_coding;locus_tag=C9F05_RS15585;old_locus_tag=C9F05_16020
NZ_PYKE01000242.1	Protein Homology	CDS	11287	11739	.	-	0	ID=cds-WP_000877172.1;Parent=gene-C9F05_RS15585;Dbxref=GenBank:WP_000877172.1;Name=WP_000877172.1;Ontology_term=GO:0006355,GO:0043565;gbkey=CDS;gene=matP;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460043.1;locus_tag=C9F05_RS15585;product=macrodomain Ter protein MatP;protein_id=WP_000877172.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	11925	13685	.	+	.	ID=gene-C9F05_RS15590;Name=C9F05_RS15590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15590;old_locus_tag=C9F05_16025
NZ_PYKE01000242.1	Protein Homology	CDS	11925	13685	.	+	0	ID=cds-WP_000156458.1;Parent=gene-C9F05_RS15590;Dbxref=GenBank:WP_000156458.1;Name=WP_000156458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460042.1;locus_tag=C9F05_RS15590;product=AAA family ATPase;protein_id=WP_000156458.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	13754	14272	.	+	.	ID=gene-C9F05_RS15595;Name=fabA;gbkey=Gene;gene=fabA;gene_biotype=protein_coding;locus_tag=C9F05_RS15595;old_locus_tag=C9F05_16030
NZ_PYKE01000242.1	Protein Homology	CDS	13754	14272	.	+	0	ID=cds-WP_000227928.1;Parent=gene-C9F05_RS15595;Dbxref=GenBank:WP_000227928.1;Name=WP_000227928.1;Ontology_term=GO:0006633,GO:0019171;gbkey=CDS;gene=fabA;go_function=(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|0019171||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014915875.1;locus_tag=C9F05_RS15595;product=bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase;protein_id=WP_000227928.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	14372	14539	.	-	.	ID=gene-C9F05_RS15600;Name=rmf;gbkey=Gene;gene=rmf;gene_biotype=protein_coding;locus_tag=C9F05_RS15600;old_locus_tag=C9F05_16035
NZ_PYKE01000242.1	Protein Homology	CDS	14372	14539	.	-	0	ID=cds-WP_001537784.1;Parent=gene-C9F05_RS15600;Dbxref=GenBank:WP_001537784.1;Name=WP_001537784.1;Ontology_term=GO:0141014,GO:0043022;gbkey=CDS;gene=rmf;go_function=ribosome binding|0043022||IEA;go_process=ribosome hibernation|0141014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460040.1;locus_tag=C9F05_RS15600;product=ribosome modulation factor;protein_id=WP_001537784.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	14795	15358	.	-	.	ID=gene-C9F05_RS15605;Name=pqiC;gbkey=Gene;gene=pqiC;gene_biotype=protein_coding;locus_tag=C9F05_RS15605;old_locus_tag=C9F05_16040
NZ_PYKE01000242.1	Protein Homology	CDS	14795	15358	.	-	0	ID=cds-WP_000759136.1;Parent=gene-C9F05_RS15605;Dbxref=GenBank:WP_000759136.1;Name=WP_000759136.1;gbkey=CDS;gene=pqiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460039.1;locus_tag=C9F05_RS15605;product=membrane integrity-associated transporter subunit PqiC;protein_id=WP_000759136.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	15355	16995	.	-	.	ID=gene-C9F05_RS15610;Name=pqiB;gbkey=Gene;gene=pqiB;gene_biotype=protein_coding;locus_tag=C9F05_RS15610;old_locus_tag=C9F05_16045
NZ_PYKE01000242.1	Protein Homology	CDS	15355	16995	.	-	0	ID=cds-WP_000433414.1;Parent=gene-C9F05_RS15610;Dbxref=GenBank:WP_000433414.1;Name=WP_000433414.1;gbkey=CDS;gene=pqiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460038.1;locus_tag=C9F05_RS15610;product=intermembrane transport protein PqiB;protein_id=WP_000433414.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	17000	18253	.	-	.	ID=gene-C9F05_RS15615;Name=pqiA;gbkey=Gene;gene=pqiA;gene_biotype=protein_coding;locus_tag=C9F05_RS15615;old_locus_tag=C9F05_16050
NZ_PYKE01000242.1	Protein Homology	CDS	17000	18253	.	-	0	ID=cds-WP_135370442.1;Parent=gene-C9F05_RS15615;Dbxref=GenBank:WP_135370442.1;Name=WP_135370442.1;gbkey=CDS;gene=pqiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460037.1;locus_tag=C9F05_RS15615;product=membrane integrity-associated transporter subunit PqiA;protein_id=WP_135370442.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	18268	20175	.	-	.	ID=gene-C9F05_RS15620;Name=C9F05_RS15620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15620;old_locus_tag=C9F05_16055
NZ_PYKE01000242.1	Protein Homology	CDS	18268	20175	.	-	0	ID=cds-WP_080083250.1;Parent=gene-C9F05_RS15620;Dbxref=GenBank:WP_080083250.1;Name=WP_080083250.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000053132.1;locus_tag=C9F05_RS15620;product=ABC transporter ATP-binding protein;protein_id=WP_080083250.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	20188	22296	.	-	.	ID=gene-C9F05_RS15625;Name=rlmKL;gbkey=Gene;gene=rlmKL;gene_biotype=protein_coding;locus_tag=C9F05_RS15625;old_locus_tag=C9F05_16060
NZ_PYKE01000242.1	Protein Homology	CDS	20188	22296	.	-	0	ID=cds-WP_001086485.1;Parent=gene-C9F05_RS15625;Dbxref=GenBank:WP_001086485.1;Name=WP_001086485.1;Ontology_term=GO:0031167,GO:0003723,GO:0008990;gbkey=CDS;gene=rlmKL;go_function=RNA binding|0003723||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460035.1;locus_tag=C9F05_RS15625;product=bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;protein_id=WP_001086485.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	22395	23504	.	+	.	ID=gene-C9F05_RS15630;Name=C9F05_RS15630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15630;old_locus_tag=C9F05_16065
NZ_PYKE01000242.1	Protein Homology	CDS	22395	23504	.	+	0	ID=cds-WP_061382952.1;Parent=gene-C9F05_RS15630;Dbxref=GenBank:WP_061382952.1;Name=WP_061382952.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460034.1;locus_tag=C9F05_RS15630;product=YcbX family protein;protein_id=WP_061382952.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	23501	24043	.	-	.	ID=gene-C9F05_RS15635;Name=zapC;gbkey=Gene;gene=zapC;gene_biotype=protein_coding;locus_tag=C9F05_RS15635;old_locus_tag=C9F05_16070
NZ_PYKE01000242.1	Protein Homology	CDS	23501	24043	.	-	0	ID=cds-WP_001220671.1;Parent=gene-C9F05_RS15635;Dbxref=GenBank:WP_001220671.1;Name=WP_001220671.1;gbkey=CDS;gene=zapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460033.1;locus_tag=C9F05_RS15635;product=cell division protein ZapC;protein_id=WP_001220671.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	24209	25219	.	-	.	ID=gene-C9F05_RS15640;Name=pyrD;gbkey=Gene;gene=pyrD;gene_biotype=protein_coding;locus_tag=C9F05_RS15640;old_locus_tag=C9F05_16075
NZ_PYKE01000242.1	Protein Homology	CDS	24209	25219	.	-	0	ID=cds-WP_000291723.1;Parent=gene-C9F05_RS15640;Dbxref=GenBank:WP_000291723.1;Name=WP_000291723.1;Ontology_term=GO:0006222,GO:0004152,GO:0016020;gbkey=CDS;gene=pyrD;go_component=membrane|0016020||IEA;go_function=dihydroorotate dehydrogenase activity|0004152||IEA;go_process=UMP biosynthetic process|0006222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460032.1;locus_tag=C9F05_RS15640;product=quinone-dependent dihydroorotate dehydrogenase;protein_id=WP_000291723.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	25427	28039	.	-	.	ID=gene-C9F05_RS15645;Name=pepN;gbkey=Gene;gene=pepN;gene_biotype=protein_coding;locus_tag=C9F05_RS15645;old_locus_tag=C9F05_16080
NZ_PYKE01000242.1	Protein Homology	CDS	25427	28039	.	-	0	ID=cds-WP_135370443.1;Parent=gene-C9F05_RS15645;Dbxref=GenBank:WP_135370443.1;Name=WP_135370443.1;Ontology_term=GO:0006508,GO:0004177,GO:0008237,GO:0008270;gbkey=CDS;gene=pepN;go_function=aminopeptidase activity|0004177||IEA,metallopeptidase activity|0008237||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000193787.1;locus_tag=C9F05_RS15645;product=aminopeptidase N;protein_id=WP_135370443.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	28306	29508	.	+	.	ID=gene-C9F05_RS15650;Name=pncB;gbkey=Gene;gene=pncB;gene_biotype=protein_coding;locus_tag=C9F05_RS15650;old_locus_tag=C9F05_16085
NZ_PYKE01000242.1	Protein Homology	CDS	28306	29508	.	+	0	ID=cds-WP_135370444.1;Parent=gene-C9F05_RS15650;Dbxref=GenBank:WP_135370444.1;Name=WP_135370444.1;Ontology_term=GO:0009435,GO:0004516;gbkey=CDS;gene=pncB;go_function=nicotinate phosphoribosyltransferase activity|0004516||IEA;go_process=NAD+ biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459979.1;locus_tag=C9F05_RS15650;product=nicotinate phosphoribosyltransferase;protein_id=WP_135370444.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	29589	31022	.	-	.	ID=gene-C9F05_RS15655;Name=C9F05_RS15655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15655;old_locus_tag=C9F05_16090
NZ_PYKE01000242.1	Protein Homology	CDS	29589	31022	.	-	0	ID=cds-WP_135370445.1;Parent=gene-C9F05_RS15655;Dbxref=GenBank:WP_135370445.1;Name=WP_135370445.1;Ontology_term=GO:0006814,GO:0006865,GO:0005283,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid:sodium symporter activity|0005283||IEA,symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524705.1;locus_tag=C9F05_RS15655;product=alanine/glycine:cation symporter family protein;protein_id=WP_135370445.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	31268	32482	.	-	.	ID=gene-C9F05_RS15660;Name=dpaL;gbkey=Gene;gene=dpaL;gene_biotype=protein_coding;locus_tag=C9F05_RS15660;old_locus_tag=C9F05_16095
NZ_PYKE01000242.1	Protein Homology	CDS	31268	32482	.	-	0	ID=cds-WP_000544852.1;Parent=gene-C9F05_RS15660;Dbxref=GenBank:WP_000544852.1;Name=WP_000544852.1;Ontology_term=GO:0008838,GO:0030170;gbkey=CDS;gene=dpaL;go_function=diaminopropionate ammonia-lyase activity|0008838||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459977.1;locus_tag=C9F05_RS15660;product=diaminopropionate ammonia-lyase;protein_id=WP_000544852.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	32799	33260	.	+	.	ID=gene-C9F05_RS15670;Name=C9F05_RS15670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15670;old_locus_tag=C9F05_16105
NZ_PYKE01000242.1	Protein Homology	CDS	32799	33260	.	+	0	ID=cds-WP_135370446.1;Parent=gene-C9F05_RS15670;Dbxref=GenBank:WP_135370446.1;Name=WP_135370446.1;Ontology_term=GO:0043565;gbkey=CDS;go_function=sequence-specific DNA binding|0043565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459976.1;locus_tag=C9F05_RS15670;product=Lrp/AsnC family transcriptional regulator;protein_id=WP_135370446.1;transl_table=11
NZ_PYKE01000242.1	RefSeq	gene	33461	34861	.	+	.	ID=gene-C9F05_RS15675;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;locus_tag=C9F05_RS15675;old_locus_tag=C9F05_16110
NZ_PYKE01000242.1	Protein Homology	CDS	33461	34861	.	+	0	ID=cds-WP_000117867.1;Parent=gene-C9F05_RS15675;Dbxref=GenBank:WP_000117867.1;Name=WP_000117867.1;Ontology_term=GO:0006421,GO:0004816,GO:0005524;gbkey=CDS;gene=asnS;go_function=asparagine-tRNA ligase activity|0004816||IEA,ATP binding|0005524||IEA;go_process=asparaginyl-tRNA aminoacylation|0006421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123540.1;locus_tag=C9F05_RS15675;product=asparagine--tRNA ligase;protein_id=WP_000117867.1;transl_table=11
##sequence-region NZ_PYKE01000163.1 1 7144
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000163.1	RefSeq	region	1	7144	.	+	.	ID=NZ_PYKE01000163.1:1..7144;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000163.1	RefSeq	gene	102	950	.	-	.	ID=gene-C9F05_RS11465;Name=C9F05_RS11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11465;old_locus_tag=C9F05_11780
NZ_PYKE01000163.1	Protein Homology	CDS	102	950	.	-	0	ID=cds-WP_000190263.1;Parent=gene-C9F05_RS11465;Dbxref=GenBank:WP_000190263.1;Name=WP_000190263.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460232.1;locus_tag=C9F05_RS11465;product=MerR family transcriptional regulator;protein_id=WP_000190263.1;transl_table=11
NZ_PYKE01000163.1	RefSeq	gene	1019	1612	.	-	.	ID=gene-C9F05_RS11470;Name=C9F05_RS11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11470;old_locus_tag=C9F05_11785
NZ_PYKE01000163.1	Protein Homology	CDS	1019	1612	.	-	0	ID=cds-WP_001534706.1;Parent=gene-C9F05_RS11470;Dbxref=GenBank:WP_001534706.1;Name=WP_001534706.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460231.1;locus_tag=C9F05_RS11470;product=helix-turn-helix domain-containing protein;protein_id=WP_001534706.1;transl_table=11
NZ_PYKE01000163.1	RefSeq	gene	1757	2545	.	-	.	ID=gene-C9F05_RS11475;Name=aadA;gbkey=Gene;gene=aadA;gene_biotype=protein_coding;locus_tag=C9F05_RS11475;old_locus_tag=C9F05_11790
NZ_PYKE01000163.1	Protein Homology	CDS	1757	2545	.	-	0	ID=cds-WP_023993480.1;Parent=gene-C9F05_RS11475;Dbxref=GenBank:WP_023993480.1;Name=WP_023993480.1;gbkey=CDS;gene=aadA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460230.1;locus_tag=C9F05_RS11475;product=cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9);protein_id=WP_023993480.1;transl_table=11
NZ_PYKE01000163.1	RefSeq	gene	2653	3300	.	-	.	ID=gene-C9F05_RS11480;Name=zinT;gbkey=Gene;gene=zinT;gene_biotype=protein_coding;locus_tag=C9F05_RS11480;old_locus_tag=C9F05_11795
NZ_PYKE01000163.1	Protein Homology	CDS	2653	3300	.	-	0	ID=cds-WP_167851660.1;Parent=gene-C9F05_RS11480;Dbxref=GenBank:WP_167851660.1;Name=WP_167851660.1;Ontology_term=GO:0008270;gbkey=CDS;gene=zinT;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460229.3;locus_tag=C9F05_RS11480;product=metal-binding protein ZinT;protein_id=WP_167851660.1;transl_table=11
NZ_PYKE01000163.1	RefSeq	gene	3412	3488	.	-	.	ID=gene-C9F05_RS11485;Name=C9F05_RS11485;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS11485;old_locus_tag=C9F05_11800
NZ_PYKE01000163.1	tRNAscan-SE	tRNA	3412	3488	.	-	.	ID=rna-C9F05_RS11485;Parent=gene-C9F05_RS11485;anticodon=(pos:complement(3452..3454));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS11485;product=tRNA-Arg
NZ_PYKE01000163.1	tRNAscan-SE	exon	3412	3488	.	-	.	ID=exon-C9F05_RS11485-1;Parent=rna-C9F05_RS11485;anticodon=(pos:complement(3452..3454));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS11485;product=tRNA-Arg
NZ_PYKE01000163.1	RefSeq	gene	3497	3823	.	-	.	ID=gene-C9F05_RS11490;Name=C9F05_RS11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11490;old_locus_tag=C9F05_11805
NZ_PYKE01000163.1	Protein Homology	CDS	3497	3823	.	-	0	ID=cds-WP_001183699.1;Parent=gene-C9F05_RS11490;Dbxref=GenBank:WP_001183699.1;Name=WP_001183699.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460228.1;locus_tag=C9F05_RS11490;product=four-helix bundle copper-binding protein;protein_id=WP_001183699.1;transl_table=11
NZ_PYKE01000163.1	RefSeq	gene	4017	5150	.	+	.	ID=gene-C9F05_RS11495;Name=C9F05_RS11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11495;old_locus_tag=C9F05_11810
NZ_PYKE01000163.1	Protein Homology	CDS	4017	5150	.	+	0	ID=cds-WP_000456065.1;Parent=gene-C9F05_RS11495;Dbxref=GenBank:WP_000456065.1;Name=WP_000456065.1;Ontology_term=GO:0055085,GO:0008381,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460227.1;locus_tag=C9F05_RS11495;product=mechanosensitive ion channel family protein;protein_id=WP_000456065.1;transl_table=11
NZ_PYKE01000163.1	RefSeq	gene	5232	5822	.	-	.	ID=gene-C9F05_RS11500;Name=C9F05_RS11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11500;old_locus_tag=C9F05_11815
NZ_PYKE01000163.1	Protein Homology	CDS	5232	5822	.	-	0	ID=cds-WP_000947459.1;Parent=gene-C9F05_RS11500;Dbxref=GenBank:WP_000947459.1;Name=WP_000947459.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460226.1;locus_tag=C9F05_RS11500;product=ATP-binding cassette domain-containing protein;protein_id=WP_000947459.1;transl_table=11
NZ_PYKE01000163.1	RefSeq	gene	5816	6613	.	-	.	ID=gene-C9F05_RS11505;Name=C9F05_RS11505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11505;old_locus_tag=C9F05_11820
NZ_PYKE01000163.1	Protein Homology	CDS	5816	6613	.	-	0	ID=cds-WP_000950212.1;Parent=gene-C9F05_RS11505;Dbxref=GenBank:WP_000950212.1;Name=WP_000950212.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460225.1;locus_tag=C9F05_RS11505;product=ATP-binding cassette domain-containing protein;protein_id=WP_000950212.1;transl_table=11
NZ_PYKE01000163.1	RefSeq	gene	6607	7144	.	-	.	ID=gene-C9F05_RS11510;Name=C9F05_RS11510;end_range=7144,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11510;old_locus_tag=C9F05_11825;partial=true
NZ_PYKE01000163.1	Protein Homology	CDS	6607	7144	.	-	1	ID=cds-WP_135370291.1;Parent=gene-C9F05_RS11510;Dbxref=GenBank:WP_135370291.1;Name=WP_135370291.1;Ontology_term=GO:0042626,GO:0140359;end_range=7144,.;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460224.1;locus_tag=C9F05_RS11510;partial=true;product=ABC transporter permease;protein_id=WP_135370291.1;transl_table=11
##sequence-region NZ_PYKE01000089.1 1 7041
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000089.1	RefSeq	region	1	7041	.	+	.	ID=NZ_PYKE01000089.1:1..7041;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000089.1	RefSeq	gene	1	153	.	+	.	ID=gene-C9F05_RS06235;Name=C9F05_RS06235;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9F05_RS06235;old_locus_tag=C9F05_06360;partial=true;start_range=.,1
NZ_PYKE01000089.1	cmsearch	ncRNA	1	153	.	+	.	ID=rna-C9F05_RS06235;Parent=gene-C9F05_RS06235;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS06235;partial=true;product=RtT sRNA;start_range=.,1
NZ_PYKE01000089.1	cmsearch	exon	1	153	.	+	.	ID=exon-C9F05_RS06235-1;Parent=rna-C9F05_RS06235;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS06235;partial=true;product=RtT sRNA;start_range=.,1
NZ_PYKE01000089.1	RefSeq	gene	188	263	.	+	.	ID=gene-C9F05_RS06240;Name=C9F05_RS06240;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS06240;old_locus_tag=C9F05_06365
NZ_PYKE01000089.1	tRNAscan-SE	tRNA	188	263	.	+	.	ID=rna-C9F05_RS06240;Parent=gene-C9F05_RS06240;anticodon=(pos:221..223);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS06240;product=tRNA-Lys
NZ_PYKE01000089.1	tRNAscan-SE	exon	188	263	.	+	.	ID=exon-C9F05_RS06240-1;Parent=rna-C9F05_RS06240;anticodon=(pos:221..223);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS06240;product=tRNA-Lys
NZ_PYKE01000089.1	RefSeq	gene	293	418	.	+	.	ID=gene-C9F05_RS06245;Name=C9F05_RS06245;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9F05_RS06245;old_locus_tag=C9F05_06370
NZ_PYKE01000089.1	cmsearch	ncRNA	293	418	.	+	.	ID=rna-C9F05_RS06245;Parent=gene-C9F05_RS06245;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS06245;product=RtT sRNA
NZ_PYKE01000089.1	cmsearch	exon	293	418	.	+	.	ID=exon-C9F05_RS06245-1;Parent=rna-C9F05_RS06245;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS06245;product=RtT sRNA
NZ_PYKE01000089.1	RefSeq	gene	448	572	.	+	.	ID=gene-C9F05_RS06250;Name=C9F05_RS06250;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9F05_RS06250;old_locus_tag=C9F05_06375
NZ_PYKE01000089.1	cmsearch	ncRNA	448	572	.	+	.	ID=rna-C9F05_RS06250;Parent=gene-C9F05_RS06250;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS06250;product=RtT sRNA
NZ_PYKE01000089.1	cmsearch	exon	448	572	.	+	.	ID=exon-C9F05_RS06250-1;Parent=rna-C9F05_RS06250;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS06250;product=RtT sRNA
NZ_PYKE01000089.1	RefSeq	gene	867	1910	.	+	.	ID=gene-C9F05_RS06255;Name=nadA;gbkey=Gene;gene=nadA;gene_biotype=protein_coding;locus_tag=C9F05_RS06255;old_locus_tag=C9F05_06380
NZ_PYKE01000089.1	Protein Homology	CDS	867	1910	.	+	0	ID=cds-WP_001749102.1;Parent=gene-C9F05_RS06255;Dbxref=GenBank:WP_001749102.1;Name=WP_001749102.1;Ontology_term=GO:0009435,GO:0008987,GO:0051539;gbkey=CDS;gene=nadA;go_function=quinolinate synthetase A activity|0008987||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=NAD+ biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459736.1;locus_tag=C9F05_RS06255;product=quinolinate synthase NadA;protein_id=WP_001749102.1;transl_table=11
NZ_PYKE01000089.1	RefSeq	gene	1935	2654	.	+	.	ID=gene-C9F05_RS06260;Name=pnuC;gbkey=Gene;gene=pnuC;gene_biotype=protein_coding;locus_tag=C9F05_RS06260;old_locus_tag=C9F05_06385
NZ_PYKE01000089.1	Protein Homology	CDS	1935	2654	.	+	0	ID=cds-WP_000345368.1;Parent=gene-C9F05_RS06260;Dbxref=GenBank:WP_000345368.1;Name=WP_000345368.1;Ontology_term=GO:0015890,GO:0015663,GO:0016020;gbkey=CDS;gene=pnuC;go_component=membrane|0016020||IEA;go_function=nicotinamide mononucleotide transmembrane transporter activity|0015663||IEA;go_process=nicotinamide mononucleotide transport|0015890||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459737.1;locus_tag=C9F05_RS06260;product=nicotinamide riboside transporter PnuC;protein_id=WP_000345368.1;transl_table=11
NZ_PYKE01000089.1	RefSeq	gene	2651	3589	.	-	.	ID=gene-C9F05_RS06265;Name=zitB;gbkey=Gene;gene=zitB;gene_biotype=protein_coding;locus_tag=C9F05_RS06265;old_locus_tag=C9F05_06390
NZ_PYKE01000089.1	Protein Homology	CDS	2651	3589	.	-	0	ID=cds-WP_000951239.1;Parent=gene-C9F05_RS06265;Dbxref=GenBank:WP_000951239.1;Name=WP_000951239.1;Ontology_term=GO:0006829,GO:0055085,GO:0005385,GO:0016020;gbkey=CDS;gene=zitB;go_component=membrane|0016020||IEA;go_function=zinc ion transmembrane transporter activity|0005385||IEA;go_process=zinc ion transport|0006829||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459738.1;locus_tag=C9F05_RS06265;product=CDF family zinc transporter ZitB;protein_id=WP_000951239.1;transl_table=11
NZ_PYKE01000089.1	RefSeq	gene	3700	4086	.	-	.	ID=gene-C9F05_RS06270;Name=C9F05_RS06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06270;old_locus_tag=C9F05_06395
NZ_PYKE01000089.1	Protein Homology	CDS	3700	4086	.	-	0	ID=cds-WP_000784380.1;Parent=gene-C9F05_RS06270;Dbxref=GenBank:WP_000784380.1;Name=WP_000784380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459739.1;locus_tag=C9F05_RS06270;product=YbgS-like family protein;protein_id=WP_000784380.1;transl_table=11
NZ_PYKE01000089.1	RefSeq	gene	4406	5458	.	+	.	ID=gene-C9F05_RS06275;Name=aroG;gbkey=Gene;gene=aroG;gene_biotype=protein_coding;locus_tag=C9F05_RS06275;old_locus_tag=C9F05_06400
NZ_PYKE01000089.1	Protein Homology	CDS	4406	5458	.	+	0	ID=cds-WP_001109233.1;Parent=gene-C9F05_RS06275;Dbxref=GenBank:WP_001109233.1;Name=WP_001109233.1;gbkey=CDS;gene=aroG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001109196.1;locus_tag=C9F05_RS06275;product=3-deoxy-7-phosphoheptulonate synthase AroG;protein_id=WP_001109233.1;transl_table=11
NZ_PYKE01000089.1	RefSeq	gene	5552	6097	.	-	.	ID=gene-C9F05_RS06280;Name=C9F05_RS06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06280;old_locus_tag=C9F05_06405
NZ_PYKE01000089.1	Protein Homology	CDS	5552	6097	.	-	0	ID=cds-WP_000970374.1;Parent=gene-C9F05_RS06280;Dbxref=GenBank:WP_000970374.1;Name=WP_000970374.1;Ontology_term=GO:0016836;gbkey=CDS;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459741.1;locus_tag=C9F05_RS06280;product=FumA C-terminus/TtdB family hydratase beta subunit;protein_id=WP_000970374.1;transl_table=11
NZ_PYKE01000089.1	RefSeq	gene	6112	6957	.	-	.	ID=gene-C9F05_RS06285;Name=C9F05_RS06285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06285;old_locus_tag=C9F05_06410
NZ_PYKE01000089.1	Protein Homology	CDS	6112	6957	.	-	0	ID=cds-WP_000086831.1;Parent=gene-C9F05_RS06285;Dbxref=GenBank:WP_000086831.1;Name=WP_000086831.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459742.1;locus_tag=C9F05_RS06285;product=fumarate hydratase;protein_id=WP_000086831.1;transl_table=11
##sequence-region NZ_PYKE01000140.1 1 7035
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000140.1	RefSeq	region	1	7035	.	+	.	ID=NZ_PYKE01000140.1:1..7035;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000140.1	RefSeq	gene	127	1317	.	+	.	ID=gene-C9F05_RS10195;Name=C9F05_RS10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10195;old_locus_tag=C9F05_10455
NZ_PYKE01000140.1	Protein Homology	CDS	127	1317	.	+	0	ID=cds-WP_135370242.1;Parent=gene-C9F05_RS10195;Dbxref=GenBank:WP_135370242.1;Name=WP_135370242.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461222.1;locus_tag=C9F05_RS10195;product=MFS transporter;protein_id=WP_135370242.1;transl_table=11
NZ_PYKE01000140.1	RefSeq	gene	1319	1573	.	-	.	ID=gene-C9F05_RS10200;Name=yfaE;gbkey=Gene;gene=yfaE;gene_biotype=protein_coding;locus_tag=C9F05_RS10200;old_locus_tag=C9F05_10460
NZ_PYKE01000140.1	Protein Homology	CDS	1319	1573	.	-	0	ID=cds-WP_000533921.1;Parent=gene-C9F05_RS10200;Dbxref=GenBank:WP_000533921.1;Name=WP_000533921.1;gbkey=CDS;gene=yfaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461221.1;locus_tag=C9F05_RS10200;product=ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE;protein_id=WP_000533921.1;transl_table=11
NZ_PYKE01000140.1	RefSeq	gene	1573	2703	.	-	.	ID=gene-C9F05_RS10205;Name=nrdB;gbkey=Gene;gene=nrdB;gene_biotype=protein_coding;locus_tag=C9F05_RS10205;old_locus_tag=C9F05_10465
NZ_PYKE01000140.1	Protein Homology	CDS	1573	2703	.	-	0	ID=cds-WP_000332026.1;Parent=gene-C9F05_RS10205;Dbxref=GenBank:WP_000332026.1;Name=WP_000332026.1;Ontology_term=GO:0009263,GO:0016491;gbkey=CDS;gene=nrdB;go_function=oxidoreductase activity|0016491||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006683700.1;locus_tag=C9F05_RS10205;product=class Ia ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_000332026.1;transl_table=11
NZ_PYKE01000140.1	RefSeq	gene	2816	5101	.	-	.	ID=gene-C9F05_RS10210;Name=nrdA;gbkey=Gene;gene=nrdA;gene_biotype=protein_coding;locus_tag=C9F05_RS10210;old_locus_tag=C9F05_10470
NZ_PYKE01000140.1	Protein Homology	CDS	2816	5101	.	-	0	ID=cds-WP_135370243.1;Parent=gene-C9F05_RS10210;Dbxref=GenBank:WP_135370243.1;Name=WP_135370243.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129392.1;locus_tag=C9F05_RS10210;product=class 1a ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_135370243.1;transl_table=11
NZ_PYKE01000140.1	RefSeq	gene	5457	6185	.	-	.	ID=gene-C9F05_RS10215;Name=ubiG;gbkey=Gene;gene=ubiG;gene_biotype=protein_coding;locus_tag=C9F05_RS10215;old_locus_tag=C9F05_10475
NZ_PYKE01000140.1	Protein Homology	CDS	5457	6185	.	-	0	ID=cds-WP_001091009.1;Parent=gene-C9F05_RS10215;Dbxref=GenBank:WP_001091009.1;Name=WP_001091009.1;Ontology_term=GO:0006744,GO:0061542;gbkey=CDS;gene=ubiG;go_function=3-demethylubiquinol 3-O-methyltransferase activity|0061542||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461218.1;locus_tag=C9F05_RS10215;product=bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG;protein_id=WP_001091009.1;transl_table=11
NZ_PYKE01000140.1	RefSeq	gene	6268	7035	.	-	.	ID=gene-C9F05_RS10220;Name=C9F05_RS10220;end_range=7035,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10220;old_locus_tag=C9F05_10480;partial=true
NZ_PYKE01000140.1	Protein Homology	CDS	6268	7035	.	-	0	ID=cds-WP_224190465.1;Parent=gene-C9F05_RS10220;Dbxref=GenBank:WP_224190465.1;Name=WP_224190465.1;Ontology_term=GO:0003677,GO:0003700;end_range=7035,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461217.3;locus_tag=C9F05_RS10220;partial=true;product=GntR family transcriptional regulator;protein_id=WP_224190465.1;transl_table=11
##sequence-region NZ_PYKE01000244.1 1 6954
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000244.1	RefSeq	region	1	6954	.	+	.	ID=NZ_PYKE01000244.1:1..6954;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000244.1	RefSeq	gene	66	3935	.	+	.	ID=gene-C9F05_RS15700;Name=icmF;gbkey=Gene;gene=icmF;gene_biotype=protein_coding;locus_tag=C9F05_RS15700;old_locus_tag=C9F05_16135
NZ_PYKE01000244.1	Protein Homology	CDS	66	3935	.	+	0	ID=cds-WP_079958646.1;Parent=gene-C9F05_RS15700;Dbxref=GenBank:WP_079958646.1;Name=WP_079958646.1;gbkey=CDS;gene=icmF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459283.1;locus_tag=C9F05_RS15700;product=Type VI secretion protein IcmF;protein_id=WP_079958646.1;transl_table=11
NZ_PYKE01000244.1	RefSeq	gene	3935	4702	.	+	.	ID=gene-C9F05_RS15705;Name=C9F05_RS15705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15705;old_locus_tag=C9F05_16140
NZ_PYKE01000244.1	Protein Homology	CDS	3935	4702	.	+	0	ID=cds-WP_001254136.1;Parent=gene-C9F05_RS15705;Dbxref=GenBank:WP_001254136.1;Name=WP_001254136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001254119.1;locus_tag=C9F05_RS15705;product=TagF domain-containing protein;protein_id=WP_001254136.1;transl_table=11
NZ_PYKE01000244.1	RefSeq	gene	4745	5215	.	+	.	ID=gene-C9F05_RS15710;Name=C9F05_RS15710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15710;old_locus_tag=C9F05_16145
NZ_PYKE01000244.1	Protein Homology	CDS	4745	5215	.	+	0	ID=cds-WP_079958645.1;Parent=gene-C9F05_RS15710;Dbxref=GenBank:WP_079958645.1;Name=WP_079958645.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000528842.1;locus_tag=C9F05_RS15710;product=glucosaminidase domain-containing protein;protein_id=WP_079958645.1;transl_table=11
NZ_PYKE01000244.1	RefSeq	gene	5200	5661	.	+	.	ID=gene-C9F05_RS15715;Name=C9F05_RS15715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15715;old_locus_tag=C9F05_16150
NZ_PYKE01000244.1	Protein Homology	CDS	5200	5661	.	+	0	ID=cds-WP_001684272.1;Parent=gene-C9F05_RS15715;Dbxref=GenBank:WP_001684272.1;Name=WP_001684272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001670388.1;locus_tag=C9F05_RS15715;product=hypothetical protein;protein_id=WP_001684272.1;transl_table=11
NZ_PYKE01000244.1	RefSeq	pseudogene	5670	5791	.	+	.	ID=gene-C9F05_RS23695;Name=C9F05_RS23695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23695;partial=true;pseudo=true;start_range=.,5670
NZ_PYKE01000244.1	Protein Homology	CDS	5670	5791	.	+	0	ID=cds-C9F05_RS23695;Parent=gene-C9F05_RS23695;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459284.1;locus_tag=C9F05_RS23695;partial=true;product=TagF domain-containing protein;pseudo=true;start_range=.,5670;transl_table=11
NZ_PYKE01000244.1	RefSeq	gene	5788	6204	.	+	.	ID=gene-C9F05_RS15720;Name=C9F05_RS15720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15720;old_locus_tag=C9F05_16155
NZ_PYKE01000244.1	Protein Homology	CDS	5788	6204	.	+	0	ID=cds-WP_000759645.1;Parent=gene-C9F05_RS15720;Dbxref=GenBank:WP_000759645.1;Name=WP_000759645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459285.1;locus_tag=C9F05_RS15720;product=DUF2195 family protein;protein_id=WP_000759645.1;transl_table=11
NZ_PYKE01000244.1	RefSeq	gene	6228	6749	.	+	.	ID=gene-C9F05_RS15725;Name=C9F05_RS15725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15725;old_locus_tag=C9F05_16160
NZ_PYKE01000244.1	Protein Homology	CDS	6228	6749	.	+	0	ID=cds-WP_000968384.1;Parent=gene-C9F05_RS15725;Dbxref=GenBank:WP_000968384.1;Name=WP_000968384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459286.1;locus_tag=C9F05_RS15725;product=DUF2778 domain-containing protein;protein_id=WP_000968384.1;transl_table=11
##sequence-region NZ_PYKE01000190.1 1 34642
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000190.1	RefSeq	region	1	34642	.	+	.	ID=NZ_PYKE01000190.1:1..34642;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000190.1	RefSeq	gene	301	1065	.	+	.	ID=gene-C9F05_RS12450;Name=pdhR;gbkey=Gene;gene=pdhR;gene_biotype=protein_coding;locus_tag=C9F05_RS12450;old_locus_tag=C9F05_12810
NZ_PYKE01000190.1	Protein Homology	CDS	301	1065	.	+	0	ID=cds-WP_000331771.1;Parent=gene-C9F05_RS12450;Dbxref=GenBank:WP_000331771.1;Name=WP_000331771.1;gbkey=CDS;gene=pdhR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459156.1;locus_tag=C9F05_RS12450;product=pyruvate dehydrogenase complex transcriptional repressor PdhR;protein_id=WP_000331771.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	1372	4035	.	+	.	ID=gene-C9F05_RS12455;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=C9F05_RS12455;old_locus_tag=C9F05_12820
NZ_PYKE01000190.1	Protein Homology	CDS	1372	4035	.	+	0	ID=cds-WP_000003853.1;Parent=gene-C9F05_RS12455;Dbxref=GenBank:WP_000003853.1;Name=WP_000003853.1;Ontology_term=GO:0006086,GO:0004739,GO:0045254;gbkey=CDS;gene=aceE;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=pyruvate dehydrogenase (acetyl-transferring) activity|0004739||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008814576.1;locus_tag=C9F05_RS12455;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=WP_000003853.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	4050	5939	.	+	.	ID=gene-C9F05_RS12460;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=C9F05_RS12460;old_locus_tag=C9F05_12825
NZ_PYKE01000190.1	Protein Homology	CDS	4050	5939	.	+	0	ID=cds-WP_135370327.1;Parent=gene-C9F05_RS12460;Dbxref=GenBank:WP_135370327.1;Name=WP_135370327.1;Ontology_term=GO:0006096,GO:0004742,GO:0045254;gbkey=CDS;gene=aceF;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=dihydrolipoyllysine-residue acetyltransferase activity|0004742||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459158.2;locus_tag=C9F05_RS12460;product=pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase;protein_id=WP_135370327.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	6140	7564	.	+	.	ID=gene-C9F05_RS12465;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=C9F05_RS12465;old_locus_tag=C9F05_12830
NZ_PYKE01000190.1	Protein Homology	CDS	6140	7564	.	+	0	ID=cds-WP_135370331.1;Parent=gene-C9F05_RS12465;Dbxref=GenBank:WP_135370331.1;Name=WP_135370331.1;Ontology_term=GO:0004148,GO:0050660;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase (NADH) activity|0004148||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001738005.1;locus_tag=C9F05_RS12465;product=dihydrolipoyl dehydrogenase;protein_id=WP_135370331.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	7853	8137	.	+	.	ID=gene-C9F05_RS12470;Name=C9F05_RS12470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12470;old_locus_tag=C9F05_12835
NZ_PYKE01000190.1	Protein Homology	CDS	7853	8137	.	+	0	ID=cds-WP_000765363.1;Parent=gene-C9F05_RS12470;Dbxref=GenBank:WP_000765363.1;Name=WP_000765363.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459160.1;locus_tag=C9F05_RS12470;product=outer membrane protein;protein_id=WP_000765363.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	8175	8966	.	-	.	ID=gene-C9F05_RS12475;Name=C9F05_RS12475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12475;old_locus_tag=C9F05_12840
NZ_PYKE01000190.1	Protein Homology	CDS	8175	8966	.	-	0	ID=cds-WP_135370328.1;Parent=gene-C9F05_RS12475;Dbxref=GenBank:WP_135370328.1;Name=WP_135370328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459161.1;locus_tag=C9F05_RS12475;product=DUF2950 family protein;protein_id=WP_135370328.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	8979	10607	.	-	.	ID=gene-C9F05_RS12480;Name=C9F05_RS12480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12480;old_locus_tag=C9F05_12845
NZ_PYKE01000190.1	Protein Homology	CDS	8979	10607	.	-	0	ID=cds-WP_135370329.1;Parent=gene-C9F05_RS12480;Dbxref=GenBank:WP_135370329.1;Name=WP_135370329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459162.2;locus_tag=C9F05_RS12480;product=DUF3300 domain-containing protein;protein_id=WP_135370329.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	10996	13593	.	+	.	ID=gene-C9F05_RS12485;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=C9F05_RS12485;old_locus_tag=C9F05_12855
NZ_PYKE01000190.1	Protein Homology	CDS	10996	13593	.	+	0	ID=cds-WP_023138991.1;Parent=gene-C9F05_RS12485;Dbxref=GenBank:WP_023138991.1;Name=WP_023138991.1;Ontology_term=GO:0006099,GO:0003994,GO:0051539,GO:0005829;gbkey=CDS;gene=acnB;go_component=cytosol|0005829||IEA;go_function=aconitate hydratase activity|0003994||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019080489.1;locus_tag=C9F05_RS12485;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=WP_023138991.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	13633	14097	.	-	.	ID=gene-C9F05_RS12490;Name=C9F05_RS12490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12490;old_locus_tag=C9F05_12860
NZ_PYKE01000190.1	Protein Homology	CDS	13633	14097	.	-	0	ID=cds-WP_000110437.1;Parent=gene-C9F05_RS12490;Dbxref=GenBank:WP_000110437.1;Name=WP_000110437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000110434.1;locus_tag=C9F05_RS12490;product=membrane protein;protein_id=WP_000110437.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	14515	14838	.	-	.	ID=gene-C9F05_RS12495;Name=C9F05_RS12495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12495;old_locus_tag=C9F05_12865
NZ_PYKE01000190.1	Protein Homology	CDS	14515	14838	.	-	0	ID=cds-WP_001101536.1;Parent=gene-C9F05_RS12495;Dbxref=GenBank:WP_001101536.1;Name=WP_001101536.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001101536.1;locus_tag=C9F05_RS12495;product=low molecular weight protein tyrosine phosphatase family protein;protein_id=WP_001101536.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	15109	15471	.	+	.	ID=gene-C9F05_RS12500;Name=yacL;gbkey=Gene;gene=yacL;gene_biotype=protein_coding;locus_tag=C9F05_RS12500;old_locus_tag=C9F05_12870
NZ_PYKE01000190.1	Protein Homology	CDS	15109	15471	.	+	0	ID=cds-WP_000384308.1;Parent=gene-C9F05_RS12500;Dbxref=GenBank:WP_000384308.1;Name=WP_000384308.1;gbkey=CDS;gene=yacL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459165.1;locus_tag=C9F05_RS12500;product=protein YacL;protein_id=WP_000384308.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	15706	16659	.	+	.	ID=gene-C9F05_RS12505;Name=C9F05_RS12505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12505;old_locus_tag=C9F05_12875
NZ_PYKE01000190.1	Protein Homology	CDS	15706	16659	.	+	0	ID=cds-WP_001022089.1;Parent=gene-C9F05_RS12505;Dbxref=GenBank:WP_001022089.1;Name=WP_001022089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459166.1;locus_tag=C9F05_RS12505;product=2-keto-3-deoxygluconate permease 1;protein_id=WP_001022089.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	16656	17927	.	+	.	ID=gene-C9F05_RS12510;Name=dtnK;gbkey=Gene;gene=dtnK;gene_biotype=protein_coding;locus_tag=C9F05_RS12510;old_locus_tag=C9F05_12880
NZ_PYKE01000190.1	Protein Homology	CDS	16656	17927	.	+	0	ID=cds-WP_000783302.1;Parent=gene-C9F05_RS12510;Dbxref=GenBank:WP_000783302.1;Name=WP_000783302.1;Ontology_term=GO:0005524,GO:0016301;gbkey=CDS;gene=dtnK;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459167.1;locus_tag=C9F05_RS12510;product=D-threonate kinase;protein_id=WP_000783302.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	17917	18900	.	+	.	ID=gene-C9F05_RS12515;Name=C9F05_RS12515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12515;old_locus_tag=C9F05_12885
NZ_PYKE01000190.1	Protein Homology	CDS	17917	18900	.	+	0	ID=cds-WP_000448745.1;Parent=gene-C9F05_RS12515;Dbxref=GenBank:WP_000448745.1;Name=WP_000448745.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459168.1;locus_tag=C9F05_RS12515;product=D-threonate 4-phosphate dehydrogenase;protein_id=WP_000448745.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	18910	19677	.	+	.	ID=gene-C9F05_RS12520;Name=C9F05_RS12520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12520;old_locus_tag=C9F05_12890
NZ_PYKE01000190.1	Protein Homology	CDS	18910	19677	.	+	0	ID=cds-WP_000678254.1;Parent=gene-C9F05_RS12520;Dbxref=GenBank:WP_000678254.1;Name=WP_000678254.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459169.1;locus_tag=C9F05_RS12520;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000678254.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	19707	20501	.	-	.	ID=gene-C9F05_RS12525;Name=speD;gbkey=Gene;gene=speD;gene_biotype=protein_coding;locus_tag=C9F05_RS12525;old_locus_tag=C9F05_12895
NZ_PYKE01000190.1	Protein Homology	CDS	19707	20501	.	-	0	ID=cds-WP_000734293.1;Parent=gene-C9F05_RS12525;Dbxref=GenBank:WP_000734293.1;Name=WP_000734293.1;Ontology_term=GO:0008295,GO:0004014;gbkey=CDS;gene=speD;go_function=adenosylmethionine decarboxylase activity|0004014||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459170.1;locus_tag=C9F05_RS12525;product=adenosylmethionine decarboxylase;protein_id=WP_000734293.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	20522	21382	.	-	.	ID=gene-C9F05_RS12530;Name=speE;gbkey=Gene;gene=speE;gene_biotype=protein_coding;locus_tag=C9F05_RS12530;old_locus_tag=C9F05_12900
NZ_PYKE01000190.1	Protein Homology	CDS	20522	21382	.	-	0	ID=cds-WP_000829968.1;Parent=gene-C9F05_RS12530;Dbxref=GenBank:WP_000829968.1;Name=WP_000829968.1;gbkey=CDS;gene=speE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459171.1;locus_tag=C9F05_RS12530;product=polyamine aminopropyltransferase;protein_id=WP_000829968.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	21489	21836	.	-	.	ID=gene-C9F05_RS12535;Name=C9F05_RS12535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12535;old_locus_tag=C9F05_12905
NZ_PYKE01000190.1	Protein Homology	CDS	21489	21836	.	-	0	ID=cds-WP_000846613.1;Parent=gene-C9F05_RS12535;Dbxref=GenBank:WP_000846613.1;Name=WP_000846613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459172.1;locus_tag=C9F05_RS12535;product=YacC family pilotin-like protein;protein_id=WP_000846613.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	22038	23648	.	+	.	ID=gene-C9F05_RS12540;Name=cueO;gbkey=Gene;gene=cueO;gene_biotype=protein_coding;locus_tag=C9F05_RS12540;old_locus_tag=C9F05_12910
NZ_PYKE01000190.1	Protein Homology	CDS	22038	23648	.	+	0	ID=cds-WP_000946046.1;Parent=gene-C9F05_RS12540;Dbxref=GenBank:WP_000946046.1;Name=WP_000946046.1;Ontology_term=GO:0005507,GO:0016491;gbkey=CDS;gene=cueO;go_function=copper ion binding|0005507||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459173.1;locus_tag=C9F05_RS12540;product=multicopper oxidase CueO;protein_id=WP_000946046.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	23726	26116	.	-	.	ID=gene-C9F05_RS12545;Name=C9F05_RS12545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12545;old_locus_tag=C9F05_12915
NZ_PYKE01000190.1	Protein Homology	CDS	23726	26116	.	-	0	ID=cds-WP_000829731.1;Parent=gene-C9F05_RS12545;Dbxref=GenBank:WP_000829731.1;Name=WP_000829731.1;Ontology_term=GO:0016614,GO:0048038,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=oxidoreductase activity%2C acting on CH-OH group of donors|0016614||IEA,quinone binding|0048038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459174.1;locus_tag=C9F05_RS12545;product=glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase;protein_id=WP_000829731.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	26322	26858	.	+	.	ID=gene-C9F05_RS12550;Name=hpt;gbkey=Gene;gene=hpt;gene_biotype=protein_coding;locus_tag=C9F05_RS12550;old_locus_tag=C9F05_12920
NZ_PYKE01000190.1	Protein Homology	CDS	26322	26858	.	+	0	ID=cds-WP_000683342.1;Parent=gene-C9F05_RS12550;Dbxref=GenBank:WP_000683342.1;Name=WP_000683342.1;Ontology_term=GO:0006166;gbkey=CDS;gene=hpt;go_process=purine ribonucleoside salvage|0006166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004204384.1;locus_tag=C9F05_RS12550;product=hypoxanthine phosphoribosyltransferase;protein_id=WP_000683342.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	26916	27578	.	-	.	ID=gene-C9F05_RS12555;Name=can;gbkey=Gene;gene=can;gene_biotype=protein_coding;locus_tag=C9F05_RS12555;old_locus_tag=C9F05_12925
NZ_PYKE01000190.1	Protein Homology	CDS	26916	27578	.	-	0	ID=cds-WP_000651591.1;Parent=gene-C9F05_RS12555;Dbxref=GenBank:WP_000651591.1;Name=WP_000651591.1;Ontology_term=GO:0015976,GO:0004089,GO:0008270;gbkey=CDS;gene=can;go_function=carbonate dehydratase activity|0004089||IEA,zinc ion binding|0008270||IEA;go_process=carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459176.1;locus_tag=C9F05_RS12555;product=carbonate dehydratase;protein_id=WP_000651591.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	27687	28613	.	+	.	ID=gene-C9F05_RS12560;Name=C9F05_RS12560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12560;old_locus_tag=C9F05_12930
NZ_PYKE01000190.1	Protein Homology	CDS	27687	28613	.	+	0	ID=cds-WP_000150619.1;Parent=gene-C9F05_RS12560;Dbxref=GenBank:WP_000150619.1;Name=WP_000150619.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459177.1;locus_tag=C9F05_RS12560;product=ABC transporter ATP-binding protein;protein_id=WP_000150619.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	28610	29380	.	+	.	ID=gene-C9F05_RS12565;Name=C9F05_RS12565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12565;old_locus_tag=C9F05_12935
NZ_PYKE01000190.1	Protein Homology	CDS	28610	29380	.	+	0	ID=cds-WP_000983418.1;Parent=gene-C9F05_RS12565;Dbxref=GenBank:WP_000983418.1;Name=WP_000983418.1;Ontology_term=GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747261.1;locus_tag=C9F05_RS12565;product=ABC transporter permease;protein_id=WP_000983418.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	29500	30579	.	-	.	ID=gene-C9F05_RS12570;Name=C9F05_RS12570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12570;old_locus_tag=C9F05_12940
NZ_PYKE01000190.1	Protein Homology	CDS	29500	30579	.	-	0	ID=cds-WP_023993180.1;Parent=gene-C9F05_RS12570;Dbxref=GenBank:WP_023993180.1;Name=WP_023993180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459179.1;locus_tag=C9F05_RS12570;product=fimbrial protein;protein_id=WP_023993180.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	30588	33134	.	-	.	ID=gene-C9F05_RS12575;Name=C9F05_RS12575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12575;old_locus_tag=C9F05_12945
NZ_PYKE01000190.1	Protein Homology	CDS	30588	33134	.	-	0	ID=cds-WP_135370330.1;Parent=gene-C9F05_RS12575;Dbxref=GenBank:WP_135370330.1;Name=WP_135370330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459180.1;locus_tag=C9F05_RS12575;product=fimbrial outer membrane usher protein;protein_id=WP_135370330.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	33161	33844	.	-	.	ID=gene-C9F05_RS12580;Name=stiB;gbkey=Gene;gene=stiB;gene_biotype=protein_coding;locus_tag=C9F05_RS12580;old_locus_tag=C9F05_12950
NZ_PYKE01000190.1	Protein Homology	CDS	33161	33844	.	-	0	ID=cds-WP_001086408.1;Parent=gene-C9F05_RS12580;Dbxref=GenBank:WP_001086408.1;Name=WP_001086408.1;gbkey=CDS;gene=stiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459181.1;locus_tag=C9F05_RS12580;product=fimbrial biogenesis chaperone StiB;protein_id=WP_001086408.1;transl_table=11
NZ_PYKE01000190.1	RefSeq	gene	33892	34431	.	-	.	ID=gene-C9F05_RS12585;Name=stiA;gbkey=Gene;gene=stiA;gene_biotype=protein_coding;locus_tag=C9F05_RS12585;old_locus_tag=C9F05_12955
NZ_PYKE01000190.1	Protein Homology	CDS	33892	34431	.	-	0	ID=cds-WP_023204291.1;Parent=gene-C9F05_RS12585;Dbxref=GenBank:WP_023204291.1;Name=WP_023204291.1;gbkey=CDS;gene=stiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459182.1;locus_tag=C9F05_RS12585;product=Sti fimbria major subunit StiA;protein_id=WP_023204291.1;transl_table=11
##sequence-region NZ_PYKE01000067.1 1 6796
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000067.1	RefSeq	region	1	6796	.	+	.	ID=NZ_PYKE01000067.1:1..6796;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000067.1	RefSeq	gene	248	970	.	-	.	ID=gene-C9F05_RS04360;Name=baeR;gbkey=Gene;gene=baeR;gene_biotype=protein_coding;locus_tag=C9F05_RS04360;old_locus_tag=C9F05_04425
NZ_PYKE01000067.1	Protein Homology	CDS	248	970	.	-	0	ID=cds-WP_000137854.1;Parent=gene-C9F05_RS04360;Dbxref=GenBank:WP_000137854.1;Name=WP_000137854.1;Ontology_term=GO:0000160,GO:0003677;gbkey=CDS;gene=baeR;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461076.1;locus_tag=C9F05_RS04360;product=two-component system response regulator BaeR;protein_id=WP_000137854.1;transl_table=11
NZ_PYKE01000067.1	RefSeq	gene	967	2370	.	-	.	ID=gene-C9F05_RS04365;Name=baeS;gbkey=Gene;gene=baeS;gene_biotype=protein_coding;locus_tag=C9F05_RS04365;old_locus_tag=C9F05_04430
NZ_PYKE01000067.1	Protein Homology	CDS	967	2370	.	-	0	ID=cds-WP_000870073.1;Parent=gene-C9F05_RS04365;Dbxref=GenBank:WP_000870073.1;Name=WP_000870073.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=baeS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461075.1;locus_tag=C9F05_RS04365;product=two-component system sensor histidine kinase BaeS;protein_id=WP_000870073.1;transl_table=11
NZ_PYKE01000067.1	RefSeq	gene	2370	3782	.	-	.	ID=gene-C9F05_RS04370;Name=C9F05_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04370;old_locus_tag=C9F05_04435
NZ_PYKE01000067.1	Protein Homology	CDS	2370	3782	.	-	0	ID=cds-WP_000137818.1;Parent=gene-C9F05_RS04370;Dbxref=GenBank:WP_000137818.1;Name=WP_000137818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461074.1;locus_tag=C9F05_RS04370;product=MFS transporter;protein_id=WP_000137818.1;transl_table=11
NZ_PYKE01000067.1	RefSeq	gene	3779	6796	.	-	.	ID=gene-C9F05_RS04375;Name=mdtC;end_range=6796,.;gbkey=Gene;gene=mdtC;gene_biotype=protein_coding;locus_tag=C9F05_RS04375;old_locus_tag=C9F05_04440;partial=true
NZ_PYKE01000067.1	Protein Homology	CDS	3779	6796	.	-	0	ID=cds-WP_135370049.1;Parent=gene-C9F05_RS04375;Dbxref=GenBank:WP_135370049.1;Name=WP_135370049.1;end_range=6796,.;gbkey=CDS;gene=mdtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461073.1;locus_tag=C9F05_RS04375;partial=true;product=multidrug efflux RND transporter permease subunit MdtC;protein_id=WP_135370049.1;transl_table=11
##sequence-region NZ_PYKE01000172.1 1 6771
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000172.1	RefSeq	region	1	6771	.	+	.	ID=NZ_PYKE01000172.1:1..6771;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000172.1	RefSeq	gene	123	1166	.	+	.	ID=gene-C9F05_RS11770;Name=citC;gbkey=Gene;gene=citC;gene_biotype=protein_coding;locus_tag=C9F05_RS11770;old_locus_tag=C9F05_12105
NZ_PYKE01000172.1	Protein Homology	CDS	123	1166	.	+	0	ID=cds-WP_001181445.1;Parent=gene-C9F05_RS11770;Dbxref=GenBank:WP_001181445.1;Name=WP_001181445.1;Ontology_term=GO:0006101,GO:0008771;gbkey=CDS;gene=citC;go_function=[citrate (pro-3S)-lyase] ligase activity|0008771||IEA;go_process=citrate metabolic process|0006101||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459063.1;locus_tag=C9F05_RS11770;product=[citrate (pro-3S)-lyase] ligase;protein_id=WP_001181445.1;transl_table=11
NZ_PYKE01000172.1	RefSeq	gene	1196	1489	.	+	.	ID=gene-C9F05_RS11775;Name=citD;gbkey=Gene;gene=citD;gene_biotype=protein_coding;locus_tag=C9F05_RS11775;old_locus_tag=C9F05_12110
NZ_PYKE01000172.1	Protein Homology	CDS	1196	1489	.	+	0	ID=cds-WP_000691461.1;Parent=gene-C9F05_RS11775;Dbxref=GenBank:WP_000691461.1;Name=WP_000691461.1;Ontology_term=GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citD;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459064.1;locus_tag=C9F05_RS11775;product=citrate lyase acyl carrier protein;protein_id=WP_000691461.1;transl_table=11
NZ_PYKE01000172.1	RefSeq	gene	1486	2355	.	+	.	ID=gene-C9F05_RS11780;Name=citE;gbkey=Gene;gene=citE;gene_biotype=protein_coding;locus_tag=C9F05_RS11780;old_locus_tag=C9F05_12115
NZ_PYKE01000172.1	Protein Homology	CDS	1486	2355	.	+	0	ID=cds-WP_001247811.1;Parent=gene-C9F05_RS11780;Dbxref=GenBank:WP_001247811.1;Name=WP_001247811.1;Ontology_term=GO:0006084,GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citE;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=acetyl-CoA metabolic process|0006084||IEA,fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459065.1;locus_tag=C9F05_RS11780;product=citrate (pro-3S)-lyase subunit beta;protein_id=WP_001247811.1;transl_table=11
NZ_PYKE01000172.1	RefSeq	gene	2366	3886	.	+	.	ID=gene-C9F05_RS11785;Name=citF;gbkey=Gene;gene=citF;gene_biotype=protein_coding;locus_tag=C9F05_RS11785;old_locus_tag=C9F05_12120
NZ_PYKE01000172.1	Protein Homology	CDS	2366	3886	.	+	0	ID=cds-WP_000665574.1;Parent=gene-C9F05_RS11785;Dbxref=GenBank:WP_000665574.1;Name=WP_000665574.1;Ontology_term=GO:0006113,GO:0008814,GO:0008815,GO:0009346;gbkey=CDS;gene=citF;go_component=ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate CoA-transferase activity|0008814||IEA,citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459066.1;locus_tag=C9F05_RS11785;product=citrate lyase subunit alpha;protein_id=WP_000665574.1;transl_table=11
NZ_PYKE01000172.1	RefSeq	gene	3886	4437	.	+	.	ID=gene-C9F05_RS11790;Name=citX;gbkey=Gene;gene=citX;gene_biotype=protein_coding;locus_tag=C9F05_RS11790;old_locus_tag=C9F05_12125
NZ_PYKE01000172.1	Protein Homology	CDS	3886	4437	.	+	0	ID=cds-WP_000679050.1;Parent=gene-C9F05_RS11790;Dbxref=GenBank:WP_000679050.1;Name=WP_000679050.1;Ontology_term=GO:0051191,GO:0050519;gbkey=CDS;gene=citX;go_function=holo-citrate lyase synthase activity|0050519||IEA;go_process=prosthetic group biosynthetic process|0051191||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459067.1;locus_tag=C9F05_RS11790;product=citrate lyase holo-[acyl-carrier protein] synthase;protein_id=WP_000679050.1;transl_table=11
NZ_PYKE01000172.1	RefSeq	gene	4415	5323	.	+	.	ID=gene-C9F05_RS11795;Name=citG;gbkey=Gene;gene=citG;gene_biotype=protein_coding;locus_tag=C9F05_RS11795;old_locus_tag=C9F05_12130
NZ_PYKE01000172.1	Protein Homology	CDS	4415	5323	.	+	0	ID=cds-WP_001103238.1;Parent=gene-C9F05_RS11795;Dbxref=GenBank:WP_001103238.1;Name=WP_001103238.1;Ontology_term=GO:0016310,GO:0019361,GO:0005524,GO:0046917;gbkey=CDS;gene=citG;go_function=ATP binding|0005524||IEA,triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=phosphorylation|0016310||IEA,2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process|0019361||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459068.1;locus_tag=C9F05_RS11795;product=triphosphoribosyl-dephospho-CoA synthase CitG;protein_id=WP_001103238.1;transl_table=11
NZ_PYKE01000172.1	RefSeq	gene	5503	6324	.	+	.	ID=gene-C9F05_RS11800;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;locus_tag=C9F05_RS11800;old_locus_tag=C9F05_12135
NZ_PYKE01000172.1	Protein Homology	CDS	5503	6324	.	+	0	ID=cds-WP_058108258.1;Parent=gene-C9F05_RS11800;Dbxref=GenBank:WP_058108258.1;Name=WP_058108258.1;Ontology_term=GO:0009089,GO:0008839;gbkey=CDS;gene=dapB;go_function=4-hydroxy-tetrahydrodipicolinate reductase|0008839||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459069.1;locus_tag=C9F05_RS11800;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_058108258.1;transl_table=11
##sequence-region NZ_PYKE01000142.1 1 34632
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000142.1	RefSeq	region	1	34632	.	+	.	ID=NZ_PYKE01000142.1:1..34632;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000142.1	RefSeq	gene	147	389	.	+	.	ID=gene-C9F05_RS10230;Name=yjbE;gbkey=Gene;gene=yjbE;gene_biotype=protein_coding;locus_tag=C9F05_RS10230;old_locus_tag=C9F05_10490
NZ_PYKE01000142.1	Protein Homology	CDS	147	389	.	+	0	ID=cds-WP_001541297.1;Parent=gene-C9F05_RS10230;Dbxref=GenBank:WP_001541297.1;Name=WP_001541297.1;gbkey=CDS;gene=yjbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313036.1;locus_tag=C9F05_RS10230;product=exopolysaccharide production protein YjbE;protein_id=WP_001541297.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	453	1091	.	+	.	ID=gene-C9F05_RS10235;Name=C9F05_RS10235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10235;old_locus_tag=C9F05_10495
NZ_PYKE01000142.1	Protein Homology	CDS	453	1091	.	+	0	ID=cds-WP_000824801.1;Parent=gene-C9F05_RS10235;Dbxref=GenBank:WP_000824801.1;Name=WP_000824801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000824802.1;locus_tag=C9F05_RS10235;product=YjbF family lipoprotein;protein_id=WP_000824801.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	1088	1822	.	+	.	ID=gene-C9F05_RS10240;Name=C9F05_RS10240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10240;old_locus_tag=C9F05_10500
NZ_PYKE01000142.1	Protein Homology	CDS	1088	1822	.	+	0	ID=cds-WP_000977960.1;Parent=gene-C9F05_RS10240;Dbxref=GenBank:WP_000977960.1;Name=WP_000977960.1;Ontology_term=GO:0042603;gbkey=CDS;go_component=capsule|0042603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463089.1;locus_tag=C9F05_RS10240;product=capsule biosynthesis GfcC family protein;protein_id=WP_000977960.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	1822	3918	.	+	.	ID=gene-C9F05_RS10245;Name=C9F05_RS10245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10245;old_locus_tag=C9F05_10505
NZ_PYKE01000142.1	Protein Homology	CDS	1822	3918	.	+	0	ID=cds-WP_000750804.1;Parent=gene-C9F05_RS10245;Dbxref=GenBank:WP_000750804.1;Name=WP_000750804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463090.1;locus_tag=C9F05_RS10245;product=YjbH domain-containing protein;protein_id=WP_000750804.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	4061	4471	.	+	.	ID=gene-C9F05_RS10250;Name=psiE;gbkey=Gene;gene=psiE;gene_biotype=protein_coding;locus_tag=C9F05_RS10250;old_locus_tag=C9F05_10510
NZ_PYKE01000142.1	Protein Homology	CDS	4061	4471	.	+	0	ID=cds-WP_000982749.1;Parent=gene-C9F05_RS10250;Dbxref=GenBank:WP_000982749.1;Name=WP_000982749.1;gbkey=CDS;gene=psiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463091.1;locus_tag=C9F05_RS10250;product=phosphate-starvation-inducible protein PsiE;protein_id=WP_000982749.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	4637	5527	.	-	.	ID=gene-C9F05_RS10255;Name=malG;gbkey=Gene;gene=malG;gene_biotype=protein_coding;locus_tag=C9F05_RS10255;old_locus_tag=C9F05_10515
NZ_PYKE01000142.1	Protein Homology	CDS	4637	5527	.	-	0	ID=cds-WP_001252085.1;Parent=gene-C9F05_RS10255;Dbxref=GenBank:WP_001252085.1;Name=WP_001252085.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=malG;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463092.1;locus_tag=C9F05_RS10255;product=maltose ABC transporter permease MalG;protein_id=WP_001252085.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	5542	7086	.	-	.	ID=gene-C9F05_RS10260;Name=malF;gbkey=Gene;gene=malF;gene_biotype=protein_coding;locus_tag=C9F05_RS10260;old_locus_tag=C9F05_10520
NZ_PYKE01000142.1	Protein Homology	CDS	5542	7086	.	-	0	ID=cds-WP_000382573.1;Parent=gene-C9F05_RS10260;Dbxref=GenBank:WP_000382573.1;Name=WP_000382573.1;Ontology_term=GO:0055085,GO:0043190;gbkey=CDS;gene=malF;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463093.1;locus_tag=C9F05_RS10260;product=maltose ABC transporter permease MalF;protein_id=WP_000382573.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	pseudogene	7129	7269	.	+	.	ID=gene-C9F05_RS24145;Name=C9F05_RS24145;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24145;partial=true;pseudo=true;start_range=.,7129
NZ_PYKE01000142.1	Protein Homology	CDS	7129	7269	.	+	0	ID=cds-C9F05_RS24145;Parent=gene-C9F05_RS24145;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=C9F05_RS24145;partial=true;product=hypothetical protein;pseudo=true;start_range=.,7129;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	7218	8408	.	-	.	ID=gene-C9F05_RS10265;Name=malE;gbkey=Gene;gene=malE;gene_biotype=protein_coding;locus_tag=C9F05_RS10265;old_locus_tag=C9F05_10525
NZ_PYKE01000142.1	Protein Homology	CDS	7218	8408	.	-	0	ID=cds-WP_000695415.1;Parent=gene-C9F05_RS10265;Dbxref=GenBank:WP_000695415.1;Name=WP_000695415.1;Ontology_term=GO:0008643,GO:0055085,GO:0015144;gbkey=CDS;gene=malE;go_function=carbohydrate transmembrane transporter activity|0015144||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000695396.1;locus_tag=C9F05_RS10265;product=maltose/maltodextrin ABC transporter substrate-binding protein MalE;protein_id=WP_000695415.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	8770	9879	.	+	.	ID=gene-C9F05_RS10270;Name=malK;gbkey=Gene;gene=malK;gene_biotype=protein_coding;locus_tag=C9F05_RS10270;old_locus_tag=C9F05_10530
NZ_PYKE01000142.1	Protein Homology	CDS	8770	9879	.	+	0	ID=cds-WP_079903433.1;Parent=gene-C9F05_RS10270;Dbxref=GenBank:WP_079903433.1;Name=WP_079903433.1;Ontology_term=GO:0008643,GO:0055085,GO:0005524,GO:0140359,GO:0043190;gbkey=CDS;gene=malK;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011915502.1;locus_tag=C9F05_RS10270;product=maltose/maltodextrin ABC transporter ATP-binding protein MalK;protein_id=WP_079903433.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	9968	11326	.	+	.	ID=gene-C9F05_RS10275;Name=C9F05_RS10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10275;old_locus_tag=C9F05_10535
NZ_PYKE01000142.1	Protein Homology	CDS	9968	11326	.	+	0	ID=cds-WP_000973678.1;Parent=gene-C9F05_RS10275;Dbxref=GenBank:WP_000973678.1;Name=WP_000973678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463096.1;locus_tag=C9F05_RS10275;product=maltoporin;protein_id=WP_000973678.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	11490	12407	.	+	.	ID=gene-C9F05_RS10280;Name=malM;gbkey=Gene;gene=malM;gene_biotype=protein_coding;locus_tag=C9F05_RS10280;old_locus_tag=C9F05_10540
NZ_PYKE01000142.1	Protein Homology	CDS	11490	12407	.	+	0	ID=cds-WP_000782497.1;Parent=gene-C9F05_RS10280;Dbxref=GenBank:WP_000782497.1;Name=WP_000782497.1;Ontology_term=GO:0008643,GO:0042597;gbkey=CDS;gene=malM;go_component=periplasmic space|0042597||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463097.1;locus_tag=C9F05_RS10280;product=maltose operon protein MalM;protein_id=WP_000782497.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	12588	13085	.	+	.	ID=gene-C9F05_RS10285;Name=ubiC;gbkey=Gene;gene=ubiC;gene_biotype=protein_coding;locus_tag=C9F05_RS10285;old_locus_tag=C9F05_10545
NZ_PYKE01000142.1	Protein Homology	CDS	12588	13085	.	+	0	ID=cds-WP_000019219.1;Parent=gene-C9F05_RS10285;Dbxref=GenBank:WP_000019219.1;Name=WP_000019219.1;Ontology_term=GO:0008813;gbkey=CDS;gene=ubiC;go_function=chorismate lyase activity|0008813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463098.1;locus_tag=C9F05_RS10285;product=chorismate lyase;protein_id=WP_000019219.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	13099	13971	.	+	.	ID=gene-C9F05_RS10290;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=C9F05_RS10290;old_locus_tag=C9F05_10550
NZ_PYKE01000142.1	Protein Homology	CDS	13099	13971	.	+	0	ID=cds-WP_000455249.1;Parent=gene-C9F05_RS10290;Dbxref=GenBank:WP_000455249.1;Name=WP_000455249.1;Ontology_term=GO:0006744,GO:0008412;gbkey=CDS;gene=ubiA;go_function=4-hydroxybenzoate polyprenyltransferase activity|0008412||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463099.1;locus_tag=C9F05_RS10290;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_000455249.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	14070	16490	.	-	.	ID=gene-C9F05_RS10295;Name=plsB;gbkey=Gene;gene=plsB;gene_biotype=protein_coding;locus_tag=C9F05_RS10295;old_locus_tag=C9F05_10555
NZ_PYKE01000142.1	Protein Homology	CDS	14070	16490	.	-	0	ID=cds-WP_000017360.1;Parent=gene-C9F05_RS10295;Dbxref=GenBank:WP_000017360.1;Name=WP_000017360.1;Ontology_term=GO:0008654,GO:0004366;gbkey=CDS;gene=plsB;go_function=glycerol-3-phosphate O-acyltransferase activity|0004366||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463100.1;locus_tag=C9F05_RS10295;product=glycerol-3-phosphate 1-O-acyltransferase PlsB;protein_id=WP_000017360.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	16661	17029	.	+	.	ID=gene-C9F05_RS10300;Name=C9F05_RS10300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10300;old_locus_tag=C9F05_10560
NZ_PYKE01000142.1	Protein Homology	CDS	16661	17029	.	+	0	ID=cds-WP_000002900.1;Parent=gene-C9F05_RS10300;Dbxref=GenBank:WP_000002900.1;Name=WP_000002900.1;Ontology_term=GO:0006654,GO:0008654,GO:0016310,GO:0004143,GO:0005524,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP-dependent diacylglycerol kinase activity|0004143||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=phosphatidic acid biosynthetic process|0006654||IEA,phospholipid biosynthetic process|0008654||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463101.1;locus_tag=C9F05_RS10300;product=diacylglycerol kinase;protein_id=WP_000002900.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	17138	17746	.	+	.	ID=gene-C9F05_RS10305;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=C9F05_RS10305;old_locus_tag=C9F05_10565
NZ_PYKE01000142.1	Protein Homology	CDS	17138	17746	.	+	0	ID=cds-WP_000646079.1;Parent=gene-C9F05_RS10305;Dbxref=GenBank:WP_000646079.1;Name=WP_000646079.1;Ontology_term=GO:0009432,GO:0045892,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=SOS response|0009432||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000646075.1;locus_tag=C9F05_RS10305;product=transcriptional repressor LexA;protein_id=WP_000646079.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	17925	19250	.	+	.	ID=gene-C9F05_RS10310;Name=dinF;gbkey=Gene;gene=dinF;gene_biotype=protein_coding;locus_tag=C9F05_RS10310;old_locus_tag=C9F05_10570
NZ_PYKE01000142.1	Protein Homology	CDS	17925	19250	.	+	0	ID=cds-WP_001128116.1;Parent=gene-C9F05_RS10310;Dbxref=GenBank:WP_001128116.1;Name=WP_001128116.1;Ontology_term=GO:0055085,GO:0015297,GO:0042910,GO:0016020;gbkey=CDS;gene=dinF;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA,xenobiotic transmembrane transporter activity|0042910||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463103.1;locus_tag=C9F05_RS10310;product=MATE family efflux transporter DinF;protein_id=WP_001128116.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	19247	19360	.	+	.	ID=gene-C9F05_RS10315;Name=C9F05_RS10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10315;old_locus_tag=C9F05_10575
NZ_PYKE01000142.1	Protein Homology	CDS	19247	19360	.	+	0	ID=cds-WP_001575282.1;Parent=gene-C9F05_RS10315;Dbxref=GenBank:WP_001575282.1;Name=WP_001575282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463104.1;locus_tag=C9F05_RS10315;product=hypothetical protein;protein_id=WP_001575282.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	19382	19591	.	+	.	ID=gene-C9F05_RS10320;Name=C9F05_RS10320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10320;old_locus_tag=C9F05_10580
NZ_PYKE01000142.1	Protein Homology	CDS	19382	19591	.	+	0	ID=cds-WP_001030592.1;Parent=gene-C9F05_RS10320;Dbxref=GenBank:WP_001030592.1;Name=WP_001030592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313055.1;locus_tag=C9F05_RS10320;product=CsbD family protein;protein_id=WP_001030592.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	19691	20206	.	-	.	ID=gene-C9F05_RS10325;Name=zur;gbkey=Gene;gene=zur;gene_biotype=protein_coding;locus_tag=C9F05_RS10325;old_locus_tag=C9F05_10585
NZ_PYKE01000142.1	Protein Homology	CDS	19691	20206	.	-	0	ID=cds-WP_000416271.1;Parent=gene-C9F05_RS10325;Dbxref=GenBank:WP_000416271.1;Name=WP_000416271.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=zur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463106.1;locus_tag=C9F05_RS10325;product=zinc uptake transcriptional repressor Zur;protein_id=WP_000416271.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	20453	21763	.	+	.	ID=gene-C9F05_RS10330;Name=C9F05_RS10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10330;old_locus_tag=C9F05_10590
NZ_PYKE01000142.1	Protein Homology	CDS	20453	21763	.	+	0	ID=cds-WP_001039335.1;Parent=gene-C9F05_RS10330;Dbxref=GenBank:WP_001039335.1;Name=WP_001039335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463107.1;locus_tag=C9F05_RS10330;product=conjugal transfer protein TraF;protein_id=WP_001039335.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	21851	22849	.	+	.	ID=gene-C9F05_RS10335;Name=dusA;gbkey=Gene;gene=dusA;gene_biotype=protein_coding;locus_tag=C9F05_RS10335;old_locus_tag=C9F05_10595
NZ_PYKE01000142.1	Protein Homology	CDS	21851	22849	.	+	0	ID=cds-WP_023250755.1;Parent=gene-C9F05_RS10335;Dbxref=GenBank:WP_023250755.1;Name=WP_023250755.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusA;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463108.1;locus_tag=C9F05_RS10335;product=tRNA dihydrouridine(20/20a) synthase DusA;protein_id=WP_023250755.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	23017	23259	.	+	.	ID=gene-C9F05_RS10340;Name=pspG;gbkey=Gene;gene=pspG;gene_biotype=protein_coding;locus_tag=C9F05_RS10340;old_locus_tag=C9F05_10600
NZ_PYKE01000142.1	Protein Homology	CDS	23017	23259	.	+	0	ID=cds-WP_000891414.1;Parent=gene-C9F05_RS10340;Dbxref=GenBank:WP_000891414.1;Name=WP_000891414.1;gbkey=CDS;gene=pspG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463109.1;locus_tag=C9F05_RS10340;product=envelope stress response protein PspG;protein_id=WP_000891414.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	23434	24417	.	-	.	ID=gene-C9F05_RS10345;Name=C9F05_RS10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10345;old_locus_tag=C9F05_10605
NZ_PYKE01000142.1	Protein Homology	CDS	23434	24417	.	-	0	ID=cds-WP_000235555.1;Parent=gene-C9F05_RS10345;Dbxref=GenBank:WP_000235555.1;Name=WP_000235555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463110.1;locus_tag=C9F05_RS10345;product=quinone oxidoreductase;protein_id=WP_000235555.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	24482	25897	.	+	.	ID=gene-C9F05_RS10350;Name=dnaB;gbkey=Gene;gene=dnaB;gene_biotype=protein_coding;locus_tag=C9F05_RS10350;old_locus_tag=C9F05_10610
NZ_PYKE01000142.1	Protein Homology	CDS	24482	25897	.	+	0	ID=cds-WP_000918353.1;Parent=gene-C9F05_RS10350;Dbxref=GenBank:WP_000918353.1;Name=WP_000918353.1;gbkey=CDS;gene=dnaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463111.1;locus_tag=C9F05_RS10350;product=replicative DNA helicase;protein_id=WP_000918353.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	25929	27008	.	+	.	ID=gene-C9F05_RS10355;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=C9F05_RS10355;old_locus_tag=C9F05_10615
NZ_PYKE01000142.1	Protein Homology	CDS	25929	27008	.	+	0	ID=cds-WP_001147297.1;Parent=gene-C9F05_RS10355;Dbxref=GenBank:WP_001147297.1;Name=WP_001147297.1;Ontology_term=GO:0006522,GO:0009252,GO:0008784;gbkey=CDS;gene=alr;go_function=alanine racemase activity|0008784||IEA;go_process=alanine metabolic process|0006522||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463112.1;locus_tag=C9F05_RS10355;product=alanine racemase;protein_id=WP_001147297.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	27194	28387	.	+	.	ID=gene-C9F05_RS10360;Name=tyrB;gbkey=Gene;gene=tyrB;gene_biotype=protein_coding;locus_tag=C9F05_RS10360;old_locus_tag=C9F05_10620
NZ_PYKE01000142.1	Protein Homology	CDS	27194	28387	.	+	0	ID=cds-WP_024797334.1;Parent=gene-C9F05_RS10360;Dbxref=GenBank:WP_024797334.1;Name=WP_024797334.1;gbkey=CDS;gene=tyrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463113.1;locus_tag=C9F05_RS10360;product=aromatic amino acid transaminase;protein_id=WP_024797334.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	28574	29287	.	+	.	ID=gene-C9F05_RS10365;Name=aphA;gbkey=Gene;gene=aphA;gene_biotype=protein_coding;locus_tag=C9F05_RS10365;old_locus_tag=C9F05_10630
NZ_PYKE01000142.1	Protein Homology	CDS	28574	29287	.	+	0	ID=cds-WP_000724435.1;Parent=gene-C9F05_RS10365;Dbxref=GenBank:WP_000724435.1;Name=WP_000724435.1;Ontology_term=GO:0003993,GO:0030288;gbkey=CDS;gene=aphA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=acid phosphatase activity|0003993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463114.1;locus_tag=C9F05_RS10365;product=acid phosphatase AphA;protein_id=WP_000724435.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	29416	29832	.	+	.	ID=gene-C9F05_RS10370;Name=C9F05_RS10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10370;old_locus_tag=C9F05_10635
NZ_PYKE01000142.1	Protein Homology	CDS	29416	29832	.	+	0	ID=cds-WP_000270393.1;Parent=gene-C9F05_RS10370;Dbxref=GenBank:WP_000270393.1;Name=WP_000270393.1;Ontology_term=GO:0003824,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463115.1;locus_tag=C9F05_RS10370;product=secondary thiamine-phosphate synthase enzyme YjbQ;protein_id=WP_000270393.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	29835	30191	.	+	.	ID=gene-C9F05_RS10375;Name=C9F05_RS10375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10375;old_locus_tag=C9F05_10640
NZ_PYKE01000142.1	Protein Homology	CDS	29835	30191	.	+	0	ID=cds-WP_000155665.1;Parent=gene-C9F05_RS10375;Dbxref=GenBank:WP_000155665.1;Name=WP_000155665.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463116.1;locus_tag=C9F05_RS10375;product=MmcQ/YjbR family DNA-binding protein;protein_id=WP_000155665.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	30192	30530	.	-	.	ID=gene-C9F05_RS10380;Name=C9F05_RS10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10380;old_locus_tag=C9F05_10645
NZ_PYKE01000142.1	Protein Homology	CDS	30192	30530	.	-	0	ID=cds-WP_021001024.1;Parent=gene-C9F05_RS10380;Dbxref=GenBank:WP_021001024.1;Name=WP_021001024.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463117.1;locus_tag=C9F05_RS10380;product=hypothetical protein;protein_id=WP_021001024.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	30517	30972	.	-	.	ID=gene-C9F05_RS10385;Name=C9F05_RS10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10385;old_locus_tag=C9F05_10650
NZ_PYKE01000142.1	Protein Homology	CDS	30517	30972	.	-	0	ID=cds-WP_135370244.1;Parent=gene-C9F05_RS10385;Dbxref=GenBank:WP_135370244.1;Name=WP_135370244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463118.1;locus_tag=C9F05_RS10385;product=hypothetical protein;protein_id=WP_135370244.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	31104	33929	.	-	.	ID=gene-C9F05_RS10390;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=C9F05_RS10390;old_locus_tag=C9F05_10655
NZ_PYKE01000142.1	Protein Homology	CDS	31104	33929	.	-	0	ID=cds-WP_000357725.1;Parent=gene-C9F05_RS10390;Dbxref=GenBank:WP_000357725.1;Name=WP_000357725.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463119.1;locus_tag=C9F05_RS10390;product=excinuclease ABC subunit UvrA;protein_id=WP_000357725.1;transl_table=11
NZ_PYKE01000142.1	RefSeq	gene	34177	34632	.	+	.	ID=gene-C9F05_RS10400;Name=ssb1;end_range=34632,.;gbkey=Gene;gene=ssb1;gene_biotype=protein_coding;locus_tag=C9F05_RS10400;old_locus_tag=C9F05_10665;partial=true
NZ_PYKE01000142.1	Protein Homology	CDS	34177	34632	.	+	0	ID=cds-WP_135370245.1;Parent=gene-C9F05_RS10400;Dbxref=GenBank:WP_135370245.1;Name=WP_135370245.1;end_range=34632,.;gbkey=CDS;gene=ssb1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463121.1;locus_tag=C9F05_RS10400;partial=true;product=single-stranded DNA-binding protein SSB1;protein_id=WP_135370245.1;transl_table=11
##sequence-region NZ_PYKE01000232.1 1 6396
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000232.1	RefSeq	region	1	6396	.	+	.	ID=NZ_PYKE01000232.1:1..6396;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000232.1	RefSeq	pseudogene	1	387	.	-	.	ID=gene-C9F05_RS15275;Name=sseK2;gbkey=Gene;gene=sseK2;gene_biotype=pseudogene;locus_tag=C9F05_RS15275;old_locus_tag=C9F05_15710;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000232.1	Protein Homology	CDS	1	387	.	-	0	ID=cds-C9F05_RS15275;Parent=gene-C9F05_RS15275;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=sseK2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461081.1;locus_tag=C9F05_RS15275;partial=true;product=type III secretion system effector arginine glycosyltransferase SseK2;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000232.1	RefSeq	gene	839	2200	.	-	.	ID=gene-C9F05_RS15280;Name=trhP;gbkey=Gene;gene=trhP;gene_biotype=protein_coding;gene_synonym=yegQ;locus_tag=C9F05_RS15280;old_locus_tag=C9F05_15715
NZ_PYKE01000232.1	Protein Homology	CDS	839	2200	.	-	0	ID=cds-WP_001517981.1;Parent=gene-C9F05_RS15280;Dbxref=GenBank:WP_001517981.1;Name=WP_001517981.1;Ontology_term=GO:0006400;gbkey=CDS;gene=trhP;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461080.1;locus_tag=C9F05_RS15280;product=prephenate-dependent tRNA uridine(34) hydroxylase TrhP;protein_id=WP_001517981.1;transl_table=11
NZ_PYKE01000232.1	RefSeq	gene	2316	4427	.	-	.	ID=gene-C9F05_RS15285;Name=C9F05_RS15285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15285;old_locus_tag=C9F05_15720
NZ_PYKE01000232.1	Protein Homology	CDS	2316	4427	.	-	0	ID=cds-WP_135370431.1;Parent=gene-C9F05_RS15285;Dbxref=GenBank:WP_135370431.1;Name=WP_135370431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461079.1;locus_tag=C9F05_RS15285;product=DUF4034 domain-containing protein;protein_id=WP_135370431.1;transl_table=11
NZ_PYKE01000232.1	RefSeq	gene	4438	5154	.	-	.	ID=gene-C9F05_RS15290;Name=C9F05_RS15290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15290;old_locus_tag=C9F05_15725
NZ_PYKE01000232.1	Protein Homology	CDS	4438	5154	.	-	0	ID=cds-WP_000498586.1;Parent=gene-C9F05_RS15290;Dbxref=GenBank:WP_000498586.1;Name=WP_000498586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461078.1;locus_tag=C9F05_RS15290;product=DUF1266 domain-containing protein;protein_id=WP_000498586.1;transl_table=11
NZ_PYKE01000232.1	RefSeq	gene	5154	6356	.	-	.	ID=gene-C9F05_RS15295;Name=C9F05_RS15295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15295;old_locus_tag=C9F05_15730
NZ_PYKE01000232.1	Protein Homology	CDS	5154	6356	.	-	0	ID=cds-WP_167851648.1;Parent=gene-C9F05_RS15295;Dbxref=GenBank:WP_167851648.1;Name=WP_167851648.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000141078.1;locus_tag=C9F05_RS15295;product=cytoplasmic protein;protein_id=WP_167851648.1;transl_table=11
##sequence-region NZ_PYKE01000033.1 1 6247
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000033.1	RefSeq	region	1	6247	.	+	.	ID=NZ_PYKE01000033.1:1..6247;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000033.1	RefSeq	pseudogene	1	160	.	+	.	ID=gene-C9F05_RS23730;Name=C9F05_RS23730;end_range=160,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23730;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000033.1	Protein Homology	CDS	1	160	.	+	1	ID=cds-C9F05_RS23730;Parent=gene-C9F05_RS23730;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=160,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459278.1;locus_tag=C9F05_RS23730;partial=true;product=type VI secretion system lipoprotein TssJ;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000033.1	RefSeq	gene	203	688	.	+	.	ID=gene-C9F05_RS01960;Name=C9F05_RS01960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01960;old_locus_tag=C9F05_01995
NZ_PYKE01000033.1	Protein Homology	CDS	203	688	.	+	0	ID=cds-WP_001081550.1;Parent=gene-C9F05_RS01960;Dbxref=GenBank:WP_001081550.1;Name=WP_001081550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459275.1;locus_tag=C9F05_RS01960;product=type VI secretion system amidase effector protein Tae4;protein_id=WP_001081550.1;transl_table=11
NZ_PYKE01000033.1	RefSeq	gene	673	1056	.	+	.	ID=gene-C9F05_RS01965;Name=C9F05_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01965;old_locus_tag=C9F05_02000
NZ_PYKE01000033.1	Protein Homology	CDS	673	1056	.	+	0	ID=cds-WP_000379146.1;Parent=gene-C9F05_RS01965;Dbxref=GenBank:WP_000379146.1;Name=WP_000379146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459276.1;locus_tag=C9F05_RS01965;product=type VI secretion system amidase immunity protein Tai4;protein_id=WP_000379146.1;transl_table=11
NZ_PYKE01000033.1	RefSeq	gene	1199	1684	.	+	.	ID=gene-C9F05_RS01970;Name=C9F05_RS01970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01970;old_locus_tag=C9F05_02005
NZ_PYKE01000033.1	Protein Homology	CDS	1199	1684	.	+	0	ID=cds-WP_023251615.1;Parent=gene-C9F05_RS01970;Dbxref=GenBank:WP_023251615.1;Name=WP_023251615.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459274.1;locus_tag=C9F05_RS01970;product=Hcp family type VI secretion system effector;protein_id=WP_023251615.1;transl_table=11
NZ_PYKE01000033.1	RefSeq	gene	1752	2288	.	+	.	ID=gene-C9F05_RS01975;Name=tssJ;gbkey=Gene;gene=tssJ;gene_biotype=protein_coding;locus_tag=C9F05_RS01975;old_locus_tag=C9F05_02010
NZ_PYKE01000033.1	Protein Homology	CDS	1752	2288	.	+	0	ID=cds-WP_135369977.1;Parent=gene-C9F05_RS01975;Dbxref=GenBank:WP_135369977.1;Name=WP_135369977.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssJ;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459278.1;locus_tag=C9F05_RS01975;product=type VI secretion system lipoprotein TssJ;protein_id=WP_135369977.1;transl_table=11
NZ_PYKE01000033.1	RefSeq	gene	2292	3635	.	+	.	ID=gene-C9F05_RS01980;Name=tssK;gbkey=Gene;gene=tssK;gene_biotype=protein_coding;locus_tag=C9F05_RS01980;old_locus_tag=C9F05_02015
NZ_PYKE01000033.1	Protein Homology	CDS	2292	3635	.	+	0	ID=cds-WP_000118732.1;Parent=gene-C9F05_RS01980;Dbxref=GenBank:WP_000118732.1;Name=WP_000118732.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssK;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459279.1;locus_tag=C9F05_RS01980;product=type VI secretion system baseplate subunit TssK;protein_id=WP_000118732.1;transl_table=11
NZ_PYKE01000033.1	RefSeq	gene	3632	4936	.	+	.	ID=gene-C9F05_RS01985;Name=tssL;gbkey=Gene;gene=tssL;gene_biotype=protein_coding;locus_tag=C9F05_RS01985;old_locus_tag=C9F05_02020
NZ_PYKE01000033.1	Protein Homology	CDS	3632	4936	.	+	0	ID=cds-WP_000132483.1;Parent=gene-C9F05_RS01985;Dbxref=GenBank:WP_000132483.1;Name=WP_000132483.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;gene=tssL;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459280.1;locus_tag=C9F05_RS01985;product=type VI secretion system protein TssL%2C long form;protein_id=WP_000132483.1;transl_table=11
NZ_PYKE01000033.1	RefSeq	gene	4941	5714	.	+	.	ID=gene-C9F05_RS01990;Name=C9F05_RS01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01990;old_locus_tag=C9F05_02025
NZ_PYKE01000033.1	Protein Homology	CDS	4941	5714	.	+	0	ID=cds-WP_135369978.1;Parent=gene-C9F05_RS01990;Dbxref=GenBank:WP_135369978.1;Name=WP_135369978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459281.1;locus_tag=C9F05_RS01990;product=Rap1a/Tai family immunity protein;protein_id=WP_135369978.1;transl_table=11
NZ_PYKE01000033.1	RefSeq	gene	5917	6247	.	+	.	ID=gene-C9F05_RS01995;Name=sciR;end_range=6247,.;gbkey=Gene;gene=sciR;gene_biotype=protein_coding;locus_tag=C9F05_RS01995;old_locus_tag=C9F05_02035;partial=true
NZ_PYKE01000033.1	Protein Homology	CDS	5917	6247	.	+	0	ID=cds-WP_135369979.1;Parent=gene-C9F05_RS01995;Dbxref=GenBank:WP_135369979.1;Name=WP_135369979.1;end_range=6247,.;gbkey=CDS;gene=sciR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459282.1;locus_tag=C9F05_RS01995;partial=true;product=Shiga-like toxin A subunit SciR;protein_id=WP_135369979.1;transl_table=11
##sequence-region NZ_PYKE01000090.1 1 33559
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000090.1	RefSeq	region	1	33559	.	+	.	ID=NZ_PYKE01000090.1:1..33559;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000090.1	RefSeq	gene	1	389	.	-	.	ID=gene-C9F05_RS06290;Name=C9F05_RS06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06290;old_locus_tag=C9F05_06415;partial=true;start_range=.,1
NZ_PYKE01000090.1	GeneMarkS-2+	CDS	1	389	.	-	0	ID=cds-WP_135370116.1;Parent=gene-C9F05_RS06290;Dbxref=GenBank:WP_135370116.1;Name=WP_135370116.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS06290;partial=true;product=hypothetical protein;protein_id=WP_135370116.1;start_range=.,1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	750	2132	.	+	.	ID=gene-C9F05_RS06295;Name=C9F05_RS06295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06295;old_locus_tag=C9F05_06420
NZ_PYKE01000090.1	Protein Homology	CDS	750	2132	.	+	0	ID=cds-WP_135370117.1;Parent=gene-C9F05_RS06295;Dbxref=GenBank:WP_135370117.1;Name=WP_135370117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014640265.1;locus_tag=C9F05_RS06295;product=TraI domain-containing protein;protein_id=WP_135370117.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	2144	3106	.	+	.	ID=gene-C9F05_RS06300;Name=C9F05_RS06300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06300;old_locus_tag=C9F05_06425
NZ_PYKE01000090.1	Protein Homology	CDS	2144	3106	.	+	0	ID=cds-WP_080190462.1;Parent=gene-C9F05_RS06300;Dbxref=GenBank:WP_080190462.1;Name=WP_080190462.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005173655.1;locus_tag=C9F05_RS06300;product=tyrosine-type recombinase/integrase;protein_id=WP_080190462.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	3318	3393	.	-	.	ID=gene-C9F05_RS06305;Name=C9F05_RS06305;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS06305;old_locus_tag=C9F05_06430
NZ_PYKE01000090.1	tRNAscan-SE	tRNA	3318	3393	.	-	.	ID=rna-C9F05_RS06305;Parent=gene-C9F05_RS06305;anticodon=(pos:complement(3358..3360));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS06305;product=tRNA-Phe
NZ_PYKE01000090.1	tRNAscan-SE	exon	3318	3393	.	-	.	ID=exon-C9F05_RS06305-1;Parent=rna-C9F05_RS06305;anticodon=(pos:complement(3358..3360));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS06305;product=tRNA-Phe
NZ_PYKE01000090.1	RefSeq	gene	3499	4209	.	-	.	ID=gene-C9F05_RS06310;Name=C9F05_RS06310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06310;old_locus_tag=C9F05_06435
NZ_PYKE01000090.1	Protein Homology	CDS	3499	4209	.	-	0	ID=cds-WP_135370118.1;Parent=gene-C9F05_RS06310;Dbxref=GenBank:WP_135370118.1;Name=WP_135370118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462031.1;locus_tag=C9F05_RS06310;product=DUF554 domain-containing protein;protein_id=WP_135370118.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	4634	6769	.	+	.	ID=gene-C9F05_RS06315;Name=C9F05_RS06315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06315;old_locus_tag=C9F05_06445
NZ_PYKE01000090.1	Protein Homology	CDS	4634	6769	.	+	0	ID=cds-WP_135370119.1;Parent=gene-C9F05_RS06315;Dbxref=GenBank:WP_135370119.1;Name=WP_135370119.1;Ontology_term=GO:0006596,GO:0016831;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA;go_process=polyamine biosynthetic process|0006596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462030.1;locus_tag=C9F05_RS06315;product=ornithine decarboxylase;protein_id=WP_135370119.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	6831	8087	.	-	.	ID=gene-C9F05_RS06320;Name=C9F05_RS06320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06320;old_locus_tag=C9F05_06450
NZ_PYKE01000090.1	Protein Homology	CDS	6831	8087	.	-	0	ID=cds-WP_001049803.1;Parent=gene-C9F05_RS06320;Dbxref=GenBank:WP_001049803.1;Name=WP_001049803.1;Ontology_term=GO:0015858,GO:0055085,GO:0015506,GO:0022857;gbkey=CDS;go_function=nucleoside:proton symporter activity|0015506||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleoside transport|0015858||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462029.1;locus_tag=C9F05_RS06320;product=nucleoside permease;protein_id=WP_001049803.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	8304	9389	.	-	.	ID=gene-C9F05_RS06325;Name=mltC;gbkey=Gene;gene=mltC;gene_biotype=protein_coding;locus_tag=C9F05_RS06325;old_locus_tag=C9F05_06455
NZ_PYKE01000090.1	Protein Homology	CDS	8304	9389	.	-	0	ID=cds-WP_000976289.1;Parent=gene-C9F05_RS06325;Dbxref=GenBank:WP_000976289.1;Name=WP_000976289.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltC;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462028.1;locus_tag=C9F05_RS06325;product=membrane-bound lytic murein transglycosylase MltC;protein_id=WP_000976289.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	9502	9777	.	-	.	ID=gene-C9F05_RS06330;Name=C9F05_RS06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06330;old_locus_tag=C9F05_06460
NZ_PYKE01000090.1	Protein Homology	CDS	9502	9777	.	-	0	ID=cds-WP_000091706.1;Parent=gene-C9F05_RS06330;Dbxref=GenBank:WP_000091706.1;Name=WP_000091706.1;Ontology_term=GO:0005506;gbkey=CDS;go_function=iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462027.1;locus_tag=C9F05_RS06330;product=oxidative damage protection protein;protein_id=WP_000091706.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	9805	10857	.	-	.	ID=gene-C9F05_RS06335;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=C9F05_RS06335;old_locus_tag=C9F05_06465
NZ_PYKE01000090.1	Protein Homology	CDS	9805	10857	.	-	0	ID=cds-WP_001148955.1;Parent=gene-C9F05_RS06335;Dbxref=GenBank:WP_001148955.1;Name=WP_001148955.1;Ontology_term=GO:0006281,GO:0019104;gbkey=CDS;gene=mutY;go_function=DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462026.1;locus_tag=C9F05_RS06335;product=A/G-specific adenine glycosylase;protein_id=WP_001148955.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	11012	11731	.	+	.	ID=gene-C9F05_RS06340;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=C9F05_RS06340;old_locus_tag=C9F05_06475
NZ_PYKE01000090.1	Protein Homology	CDS	11012	11731	.	+	0	ID=cds-WP_000786893.1;Parent=gene-C9F05_RS06340;Dbxref=GenBank:WP_000786893.1;Name=WP_000786893.1;Ontology_term=GO:0006400,GO:0008176;gbkey=CDS;gene=trmB;go_function=tRNA (guanine(46)-N7)-methyltransferase activity|0008176||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462025.1;locus_tag=C9F05_RS06340;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_000786893.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	11731	12057	.	+	.	ID=gene-C9F05_RS06345;Name=C9F05_RS06345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06345;old_locus_tag=C9F05_06480
NZ_PYKE01000090.1	Protein Homology	CDS	11731	12057	.	+	0	ID=cds-WP_001107574.1;Parent=gene-C9F05_RS06345;Dbxref=GenBank:WP_001107574.1;Name=WP_001107574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462024.1;locus_tag=C9F05_RS06345;product=YggL family protein;protein_id=WP_001107574.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	12107	12826	.	+	.	ID=gene-C9F05_RS06350;Name=C9F05_RS06350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06350;old_locus_tag=C9F05_06485
NZ_PYKE01000090.1	Protein Homology	CDS	12107	12826	.	+	0	ID=cds-WP_000984827.1;Parent=gene-C9F05_RS06350;Dbxref=GenBank:WP_000984827.1;Name=WP_000984827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462023.1;locus_tag=C9F05_RS06350;product=DUF2884 domain-containing protein;protein_id=WP_000984827.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	13015	14061	.	+	.	ID=gene-C9F05_RS06355;Name=ansB;gbkey=Gene;gene=ansB;gene_biotype=protein_coding;locus_tag=C9F05_RS06355;old_locus_tag=C9F05_06490
NZ_PYKE01000090.1	Protein Homology	CDS	13015	14061	.	+	0	ID=cds-WP_000394189.1;Parent=gene-C9F05_RS06355;Dbxref=GenBank:WP_000394189.1;Name=WP_000394189.1;Ontology_term=GO:0006528,GO:0004067;gbkey=CDS;gene=ansB;go_function=asparaginase activity|0004067||IEA;go_process=asparagine metabolic process|0006528||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462022.1;locus_tag=C9F05_RS06355;product=L-asparaginase 2;protein_id=WP_000394189.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	14194	15201	.	+	.	ID=gene-C9F05_RS06360;Name=C9F05_RS06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06360;old_locus_tag=C9F05_06495
NZ_PYKE01000090.1	Protein Homology	CDS	14194	15201	.	+	0	ID=cds-WP_023233416.1;Parent=gene-C9F05_RS06360;Dbxref=GenBank:WP_023233416.1;Name=WP_023233416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462021.1;locus_tag=C9F05_RS06360;product=DUF1202 domain-containing protein;protein_id=WP_023233416.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	15293	16429	.	-	.	ID=gene-C9F05_RS06365;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=C9F05_RS06365;old_locus_tag=C9F05_06500
NZ_PYKE01000090.1	Protein Homology	CDS	15293	16429	.	-	0	ID=cds-WP_001096530.1;Parent=gene-C9F05_RS06365;Dbxref=GenBank:WP_001096530.1;Name=WP_001096530.1;Ontology_term=GO:0006779,GO:0051539,GO:0051989,GO:0005737;gbkey=CDS;gene=hemW;go_component=cytoplasm|0005737||IEA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462020.1;locus_tag=C9F05_RS06365;product=radical SAM family heme chaperone HemW;protein_id=WP_001096530.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	16422	17015	.	-	.	ID=gene-C9F05_RS06370;Name=C9F05_RS06370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06370;old_locus_tag=C9F05_06505
NZ_PYKE01000090.1	Protein Homology	CDS	16422	17015	.	-	0	ID=cds-WP_001174769.1;Parent=gene-C9F05_RS06370;Dbxref=GenBank:WP_001174769.1;Name=WP_001174769.1;Ontology_term=GO:0009143,GO:0047429;gbkey=CDS;go_function=nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleoside triphosphate catabolic process|0009143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462019.1;locus_tag=C9F05_RS06370;product=XTP/dITP diphosphatase;protein_id=WP_001174769.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	17023	17313	.	-	.	ID=gene-C9F05_RS06375;Name=yggU;gbkey=Gene;gene=yggU;gene_biotype=protein_coding;locus_tag=C9F05_RS06375;old_locus_tag=C9F05_06510
NZ_PYKE01000090.1	Protein Homology	CDS	17023	17313	.	-	0	ID=cds-WP_001277203.1;Parent=gene-C9F05_RS06375;Dbxref=GenBank:WP_001277203.1;Name=WP_001277203.1;gbkey=CDS;gene=yggU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462018.1;locus_tag=C9F05_RS06375;product=DUF167 family protein YggU;protein_id=WP_001277203.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	17310	17876	.	-	.	ID=gene-C9F05_RS06380;Name=C9F05_RS06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06380;old_locus_tag=C9F05_06515
NZ_PYKE01000090.1	Protein Homology	CDS	17310	17876	.	-	0	ID=cds-WP_001094848.1;Parent=gene-C9F05_RS06380;Dbxref=GenBank:WP_001094848.1;Name=WP_001094848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462017.1;locus_tag=C9F05_RS06380;product=YggT family protein;protein_id=WP_001094848.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	17895	18599	.	-	.	ID=gene-C9F05_RS06385;Name=C9F05_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06385;old_locus_tag=C9F05_06520
NZ_PYKE01000090.1	Protein Homology	CDS	17895	18599	.	-	0	ID=cds-WP_135370120.1;Parent=gene-C9F05_RS06385;Dbxref=GenBank:WP_135370120.1;Name=WP_135370120.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462016.1;locus_tag=C9F05_RS06385;product=YggS family pyridoxal phosphate-dependent enzyme;protein_id=WP_135370120.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	18617	19597	.	+	.	ID=gene-C9F05_RS06390;Name=C9F05_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06390;old_locus_tag=C9F05_06525
NZ_PYKE01000090.1	Protein Homology	CDS	18617	19597	.	+	0	ID=cds-WP_135370121.1;Parent=gene-C9F05_RS06390;Dbxref=GenBank:WP_135370121.1;Name=WP_135370121.1;Ontology_term=GO:0043107,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=type IV pilus-dependent motility|0043107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462015.1;locus_tag=C9F05_RS06390;product=type IV pilus twitching motility protein PilT;protein_id=WP_135370121.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	19729	20415	.	+	.	ID=gene-C9F05_RS06395;Name=C9F05_RS06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06395;old_locus_tag=C9F05_06530
NZ_PYKE01000090.1	Protein Homology	CDS	19729	20415	.	+	0	ID=cds-WP_000098329.1;Parent=gene-C9F05_RS06395;Dbxref=GenBank:WP_000098329.1;Name=WP_000098329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462014.1;locus_tag=C9F05_RS06395;product=IclR family transcriptional regulator domain-containing protein;protein_id=WP_000098329.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	20462	20878	.	-	.	ID=gene-C9F05_RS06400;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=C9F05_RS06400;old_locus_tag=C9F05_06535
NZ_PYKE01000090.1	Protein Homology	CDS	20462	20878	.	-	0	ID=cds-WP_135370122.1;Parent=gene-C9F05_RS06400;Dbxref=GenBank:WP_135370122.1;Name=WP_135370122.1;Ontology_term=GO:0006364;gbkey=CDS;gene=ruvX;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462013.1;locus_tag=C9F05_RS06400;product=Holliday junction resolvase RuvX;protein_id=WP_135370122.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	20878	21441	.	-	.	ID=gene-C9F05_RS06405;Name=C9F05_RS06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06405;old_locus_tag=C9F05_06540
NZ_PYKE01000090.1	Protein Homology	CDS	20878	21441	.	-	0	ID=cds-WP_001053167.1;Parent=gene-C9F05_RS06405;Dbxref=GenBank:WP_001053167.1;Name=WP_001053167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417423.4;locus_tag=C9F05_RS06405;product=YqgE/AlgH family protein;protein_id=WP_001053167.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	21657	22604	.	-	.	ID=gene-C9F05_RS06410;Name=gshB;gbkey=Gene;gene=gshB;gene_biotype=protein_coding;locus_tag=C9F05_RS06410;old_locus_tag=C9F05_06545
NZ_PYKE01000090.1	Protein Homology	CDS	21657	22604	.	-	0	ID=cds-WP_000593248.1;Parent=gene-C9F05_RS06410;Dbxref=GenBank:WP_000593248.1;Name=WP_000593248.1;Ontology_term=GO:0006750,GO:0004363,GO:0005524,GO:0046872;gbkey=CDS;gene=gshB;go_function=glutathione synthase activity|0004363||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462011.1;locus_tag=C9F05_RS06410;product=glutathione synthase;protein_id=WP_000593248.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	22624	23355	.	-	.	ID=gene-C9F05_RS06415;Name=rsmE;gbkey=Gene;gene=rsmE;gene_biotype=protein_coding;locus_tag=C9F05_RS06415;old_locus_tag=C9F05_06550
NZ_PYKE01000090.1	Protein Homology	CDS	22624	23355	.	-	0	ID=cds-WP_001222488.1;Parent=gene-C9F05_RS06415;Dbxref=GenBank:WP_001222488.1;Name=WP_001222488.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rsmE;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311849.2;locus_tag=C9F05_RS06415;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=WP_001222488.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	23432	24139	.	-	.	ID=gene-C9F05_RS06420;Name=endA;gbkey=Gene;gene=endA;gene_biotype=protein_coding;locus_tag=C9F05_RS06420;old_locus_tag=C9F05_06555
NZ_PYKE01000090.1	Protein Homology	CDS	23432	24139	.	-	0	ID=cds-WP_000286133.1;Parent=gene-C9F05_RS06420;Dbxref=GenBank:WP_000286133.1;Name=WP_000286133.1;Ontology_term=GO:0004518;gbkey=CDS;gene=endA;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462009.1;locus_tag=C9F05_RS06420;product=deoxyribonuclease I;protein_id=WP_000286133.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	24235	24732	.	-	.	ID=gene-C9F05_RS06425;Name=C9F05_RS06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06425;old_locus_tag=C9F05_06560
NZ_PYKE01000090.1	Protein Homology	CDS	24235	24732	.	-	0	ID=cds-WP_000856775.1;Parent=gene-C9F05_RS06425;Dbxref=GenBank:WP_000856775.1;Name=WP_000856775.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462008.1;locus_tag=C9F05_RS06425;product=SprT family zinc-dependent metalloprotease;protein_id=WP_000856775.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	24811	26205	.	-	.	ID=gene-C9F05_RS06430;Name=galP;gbkey=Gene;gene=galP;gene_biotype=protein_coding;locus_tag=C9F05_RS06430;old_locus_tag=C9F05_06565
NZ_PYKE01000090.1	Protein Homology	CDS	24811	26205	.	-	0	ID=cds-WP_001113171.1;Parent=gene-C9F05_RS06430;Dbxref=GenBank:WP_001113171.1;Name=WP_001113171.1;gbkey=CDS;gene=galP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462007.1;locus_tag=C9F05_RS06430;product=galactose/proton symporter;protein_id=WP_001113171.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	26698	27852	.	-	.	ID=gene-C9F05_RS06435;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=C9F05_RS06435;old_locus_tag=C9F05_06570
NZ_PYKE01000090.1	Protein Homology	CDS	26698	27852	.	-	0	ID=cds-WP_001062140.1;Parent=gene-C9F05_RS06435;Dbxref=GenBank:WP_001062140.1;Name=WP_001062140.1;Ontology_term=GO:0006556,GO:0004478,GO:0005524;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA,ATP binding|0005524||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123306.1;locus_tag=C9F05_RS06435;product=methionine adenosyltransferase;protein_id=WP_001062140.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	27908	28207	.	+	.	ID=gene-C9F05_RS06440;Name=C9F05_RS06440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06440;old_locus_tag=C9F05_06575
NZ_PYKE01000090.1	GeneMarkS-2+	CDS	27908	28207	.	+	0	ID=cds-WP_001543499.1;Parent=gene-C9F05_RS06440;Dbxref=GenBank:WP_001543499.1;Name=WP_001543499.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS06440;product=hypothetical protein;protein_id=WP_001543499.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	28267	28416	.	+	.	ID=gene-C9F05_RS23965;Name=C9F05_RS23965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23965
NZ_PYKE01000090.1	Protein Homology	CDS	28267	28416	.	+	0	ID=cds-WP_001751809.1;Parent=gene-C9F05_RS23965;Dbxref=GenBank:WP_001751809.1;Name=WP_001751809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051195.1;locus_tag=C9F05_RS23965;product=hypothetical protein;protein_id=WP_001751809.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	28502	28633	.	+	.	ID=gene-C9F05_RS06450;Name=yqgB;gbkey=Gene;gene=yqgB;gene_biotype=protein_coding;locus_tag=C9F05_RS06450;old_locus_tag=C9F05_06585
NZ_PYKE01000090.1	Protein Homology	CDS	28502	28633	.	+	0	ID=cds-WP_000729109.1;Parent=gene-C9F05_RS06450;Dbxref=GenBank:WP_000729109.1;Name=WP_000729109.1;gbkey=CDS;gene=yqgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462003.1;locus_tag=C9F05_RS06450;product=acid stress response protein YqgB;protein_id=WP_000729109.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	28642	30618	.	+	.	ID=gene-C9F05_RS06455;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=C9F05_RS06455;old_locus_tag=C9F05_06590
NZ_PYKE01000090.1	Protein Homology	CDS	28642	30618	.	+	0	ID=cds-WP_001278580.1;Parent=gene-C9F05_RS06455;Dbxref=GenBank:WP_001278580.1;Name=WP_001278580.1;Ontology_term=GO:0006527,GO:0008792;gbkey=CDS;gene=speA;go_function=arginine decarboxylase activity|0008792||IEA;go_process=L-arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462002.1;locus_tag=C9F05_RS06455;product=biosynthetic arginine decarboxylase;protein_id=WP_001278580.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	30762	31493	.	+	.	ID=gene-C9F05_RS06460;Name=C9F05_RS06460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06460;old_locus_tag=C9F05_06595
NZ_PYKE01000090.1	Protein Homology	CDS	30762	31493	.	+	0	ID=cds-WP_000032795.1;Parent=gene-C9F05_RS06460;Dbxref=GenBank:WP_000032795.1;Name=WP_000032795.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462001.1;locus_tag=C9F05_RS06460;product=hypothetical protein;protein_id=WP_000032795.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	gene	31647	32447	.	+	.	ID=gene-C9F05_RS06465;Name=C9F05_RS06465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06465;old_locus_tag=C9F05_06600
NZ_PYKE01000090.1	Protein Homology	CDS	31647	32447	.	+	0	ID=cds-WP_001576357.1;Parent=gene-C9F05_RS06465;Dbxref=GenBank:WP_001576357.1;Name=WP_001576357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462000.3;locus_tag=C9F05_RS06465;product=FadR/GntR family transcriptional regulator;protein_id=WP_001576357.1;transl_table=11
NZ_PYKE01000090.1	RefSeq	pseudogene	32762	33052	.	-	.	ID=gene-C9F05_RS23970;Name=C9F05_RS23970;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23970;pseudo=true
NZ_PYKE01000090.1	Protein Homology	CDS	32762	33052	.	-	0	ID=cds-C9F05_RS23970;Parent=gene-C9F05_RS23970;Note=internal stop;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014766.6;locus_tag=C9F05_RS23970;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000046.1 1 6124
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000046.1	RefSeq	region	1	6124	.	+	.	ID=NZ_PYKE01000046.1:1..6124;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000046.1	RefSeq	gene	76	633	.	+	.	ID=gene-C9F05_RS03040;Name=C9F05_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03040;old_locus_tag=C9F05_03090
NZ_PYKE01000046.1	Protein Homology	CDS	76	633	.	+	0	ID=cds-WP_023251081.1;Parent=gene-C9F05_RS03040;Dbxref=GenBank:WP_023251081.1;Name=WP_023251081.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460625.1;locus_tag=C9F05_RS03040;product=redoxin family protein;protein_id=WP_023251081.1;transl_table=11
NZ_PYKE01000046.1	RefSeq	gene	740	1078	.	-	.	ID=gene-C9F05_RS03045;Name=C9F05_RS03045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03045;old_locus_tag=C9F05_03095
NZ_PYKE01000046.1	Protein Homology	CDS	740	1078	.	-	0	ID=cds-WP_000051816.1;Parent=gene-C9F05_RS03045;Dbxref=GenBank:WP_000051816.1;Name=WP_000051816.1;Ontology_term=GO:0017000,GO:0004497,GO:0016491;gbkey=CDS;go_function=monooxygenase activity|0004497||IEA,oxidoreductase activity|0016491||IEA;go_process=antibiotic biosynthetic process|0017000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000051808.1;locus_tag=C9F05_RS03045;product=antibiotic biosynthesis monooxygenase family protein;protein_id=WP_000051816.1;transl_table=11
NZ_PYKE01000046.1	RefSeq	gene	1106	1792	.	-	.	ID=gene-C9F05_RS03050;Name=C9F05_RS03050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03050;old_locus_tag=C9F05_03100
NZ_PYKE01000046.1	Protein Homology	CDS	1106	1792	.	-	0	ID=cds-WP_023250372.1;Parent=gene-C9F05_RS03050;Dbxref=GenBank:WP_023250372.1;Name=WP_023250372.1;Ontology_term=GO:0003723;gbkey=CDS;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460624.1;locus_tag=C9F05_RS03050;product=B3/B4 domain-containing protein;protein_id=WP_023250372.1;transl_table=11
NZ_PYKE01000046.1	RefSeq	gene	1836	2438	.	+	.	ID=gene-C9F05_RS03055;Name=C9F05_RS03055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03055;old_locus_tag=C9F05_03105
NZ_PYKE01000046.1	Protein Homology	CDS	1836	2438	.	+	0	ID=cds-WP_000163371.1;Parent=gene-C9F05_RS03055;Dbxref=GenBank:WP_000163371.1;Name=WP_000163371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460623.1;locus_tag=C9F05_RS03055;product=helix-turn-helix domain-containing protein;protein_id=WP_000163371.1;transl_table=11
NZ_PYKE01000046.1	RefSeq	gene	2524	3555	.	-	.	ID=gene-C9F05_RS03060;Name=C9F05_RS03060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03060;old_locus_tag=C9F05_03110
NZ_PYKE01000046.1	Protein Homology	CDS	2524	3555	.	-	0	ID=cds-WP_000493665.1;Parent=gene-C9F05_RS03060;Dbxref=GenBank:WP_000493665.1;Name=WP_000493665.1;Ontology_term=GO:0055085,GO:0008381,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460622.1;locus_tag=C9F05_RS03060;product=mechanosensitive ion channel family protein;protein_id=WP_000493665.1;transl_table=11
NZ_PYKE01000046.1	RefSeq	gene	3794	4048	.	+	.	ID=gene-C9F05_RS03065;Name=C9F05_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03065;old_locus_tag=C9F05_03115
NZ_PYKE01000046.1	Protein Homology	CDS	3794	4048	.	+	0	ID=cds-WP_000605645.1;Parent=gene-C9F05_RS03065;Dbxref=GenBank:WP_000605645.1;Name=WP_000605645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460621.1;locus_tag=C9F05_RS03065;product=DUF2534 family protein;protein_id=WP_000605645.1;transl_table=11
NZ_PYKE01000046.1	RefSeq	gene	4103	5050	.	-	.	ID=gene-C9F05_RS03070;Name=uspE;gbkey=Gene;gene=uspE;gene_biotype=protein_coding;locus_tag=C9F05_RS03070;old_locus_tag=C9F05_03120
NZ_PYKE01000046.1	Protein Homology	CDS	4103	5050	.	-	0	ID=cds-WP_001262138.1;Parent=gene-C9F05_RS03070;Dbxref=GenBank:WP_001262138.1;Name=WP_001262138.1;gbkey=CDS;gene=uspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460620.1;locus_tag=C9F05_RS03070;product=universal stress protein UspE;protein_id=WP_001262138.1;transl_table=11
NZ_PYKE01000046.1	RefSeq	gene	5201	5953	.	-	.	ID=gene-C9F05_RS03075;Name=fnr;gbkey=Gene;gene=fnr;gene_biotype=protein_coding;locus_tag=C9F05_RS03075;old_locus_tag=C9F05_03125
NZ_PYKE01000046.1	Protein Homology	CDS	5201	5953	.	-	0	ID=cds-WP_000611914.1;Parent=gene-C9F05_RS03075;Dbxref=GenBank:WP_000611914.1;Name=WP_000611914.1;gbkey=CDS;gene=fnr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007849744.1;locus_tag=C9F05_RS03075;product=fumarate/nitrate reduction transcriptional regulator Fnr;protein_id=WP_000611914.1;transl_table=11
##sequence-region NZ_PYKE01000022.1 1 6077
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000022.1	RefSeq	region	1	6077	.	+	.	ID=NZ_PYKE01000022.1:1..6077;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000022.1	RefSeq	gene	1	405	.	+	.	ID=gene-C9F05_RS00980;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=protein_coding;locus_tag=C9F05_RS00980;old_locus_tag=C9F05_00990;partial=true;start_range=.,1
NZ_PYKE01000022.1	Protein Homology	CDS	1	405	.	+	0	ID=cds-WP_135369947.1;Parent=gene-C9F05_RS00980;Dbxref=GenBank:WP_135369947.1;Name=WP_135369947.1;Ontology_term=GO:0015886,GO:0017004,GO:0015439,GO:0022857,GO:0043190;gbkey=CDS;gene=ccmA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type heme transporter activity|0015439||IEA,transmembrane transporter activity|0022857||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461197.1;locus_tag=C9F05_RS00980;partial=true;product=heme ABC exporter ATP-binding protein CcmA;protein_id=WP_135369947.1;start_range=.,1;transl_table=11
NZ_PYKE01000022.1	RefSeq	gene	402	1061	.	+	.	ID=gene-C9F05_RS00985;Name=ccmB;gbkey=Gene;gene=ccmB;gene_biotype=protein_coding;locus_tag=C9F05_RS00985;old_locus_tag=C9F05_00995
NZ_PYKE01000022.1	Protein Homology	CDS	402	1061	.	+	0	ID=cds-WP_023238344.1;Parent=gene-C9F05_RS00985;Dbxref=GenBank:WP_023238344.1;Name=WP_023238344.1;Ontology_term=GO:0015886,GO:0015232;gbkey=CDS;gene=ccmB;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461196.1;locus_tag=C9F05_RS00985;product=heme exporter protein CcmB;protein_id=WP_023238344.1;transl_table=11
NZ_PYKE01000022.1	RefSeq	gene	1112	1849	.	+	.	ID=gene-C9F05_RS00990;Name=C9F05_RS00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00990;old_locus_tag=C9F05_01000
NZ_PYKE01000022.1	Protein Homology	CDS	1112	1849	.	+	0	ID=cds-WP_000265997.1;Parent=gene-C9F05_RS00990;Dbxref=GenBank:WP_000265997.1;Name=WP_000265997.1;Ontology_term=GO:0017004,GO:0015232,GO:0020037,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA,heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461195.1;locus_tag=C9F05_RS00990;product=heme ABC transporter permease;protein_id=WP_000265997.1;transl_table=11
NZ_PYKE01000022.1	RefSeq	gene	1846	2058	.	+	.	ID=gene-C9F05_RS00995;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=C9F05_RS00995;old_locus_tag=C9F05_01005
NZ_PYKE01000022.1	Protein Homology	CDS	1846	2058	.	+	0	ID=cds-WP_000074110.1;Parent=gene-C9F05_RS00995;Dbxref=GenBank:WP_000074110.1;Name=WP_000074110.1;Ontology_term=GO:0015886,GO:0017004,GO:0016020;gbkey=CDS;gene=ccmD;go_component=membrane|0016020||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461194.1;locus_tag=C9F05_RS00995;product=heme exporter protein CcmD;protein_id=WP_000074110.1;transl_table=11
NZ_PYKE01000022.1	RefSeq	gene	2055	2534	.	+	.	ID=gene-C9F05_RS01000;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=C9F05_RS01000;old_locus_tag=C9F05_01010
NZ_PYKE01000022.1	Protein Homology	CDS	2055	2534	.	+	0	ID=cds-WP_001053618.1;Parent=gene-C9F05_RS01000;Dbxref=GenBank:WP_001053618.1;Name=WP_001053618.1;gbkey=CDS;gene=ccmE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461193.1;locus_tag=C9F05_RS01000;product=cytochrome c maturation protein CcmE;protein_id=WP_001053618.1;transl_table=11
NZ_PYKE01000022.1	RefSeq	gene	2531	4462	.	+	.	ID=gene-C9F05_RS01005;Name=C9F05_RS01005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01005;old_locus_tag=C9F05_01015
NZ_PYKE01000022.1	Protein Homology	CDS	2531	4462	.	+	0	ID=cds-WP_023215043.1;Parent=gene-C9F05_RS01005;Dbxref=GenBank:WP_023215043.1;Name=WP_023215043.1;Ontology_term=GO:0017004,GO:0015232,GO:0020037,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=heme transmembrane transporter activity|0015232||IEA,heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461192.1;locus_tag=C9F05_RS01005;product=heme lyase CcmF/NrfE family subunit;protein_id=WP_023215043.1;transl_table=11
NZ_PYKE01000022.1	RefSeq	gene	4459	5016	.	+	.	ID=gene-C9F05_RS01010;Name=dsbE;gbkey=Gene;gene=dsbE;gene_biotype=protein_coding;locus_tag=C9F05_RS01010;old_locus_tag=C9F05_01020
NZ_PYKE01000022.1	Protein Homology	CDS	4459	5016	.	+	0	ID=cds-WP_000828292.1;Parent=gene-C9F05_RS01010;Dbxref=GenBank:WP_000828292.1;Name=WP_000828292.1;gbkey=CDS;gene=dsbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461191.1;locus_tag=C9F05_RS01010;product=thiol:disulfide interchange protein DsbE;protein_id=WP_000828292.1;transl_table=11
NZ_PYKE01000022.1	RefSeq	gene	5013	6056	.	+	.	ID=gene-C9F05_RS01015;Name=C9F05_RS01015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01015;old_locus_tag=C9F05_01025
NZ_PYKE01000022.1	Protein Homology	CDS	5013	6056	.	+	0	ID=cds-WP_135369948.1;Parent=gene-C9F05_RS01015;Dbxref=GenBank:WP_135369948.1;Name=WP_135369948.1;Ontology_term=GO:0017004,GO:0015035,GO:0046872,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=protein-disulfide reductase activity|0015035||IEA,metal ion binding|0046872||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462712.1;locus_tag=C9F05_RS01015;product=cytochrome c-type biogenesis protein CcmH;protein_id=WP_135369948.1;transl_table=11
##sequence-region NZ_PYKE01000192.1 1 5998
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000192.1	RefSeq	region	1	5998	.	+	.	ID=NZ_PYKE01000192.1:1..5998;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000192.1	RefSeq	gene	602	2170	.	+	.	ID=gene-C9F05_RS12620;Name=cydA;gbkey=Gene;gene=cydA;gene_biotype=protein_coding;locus_tag=C9F05_RS12620;old_locus_tag=C9F05_12990
NZ_PYKE01000192.1	Protein Homology	CDS	602	2170	.	+	0	ID=cds-WP_000884369.1;Parent=gene-C9F05_RS12620;Dbxref=GenBank:WP_000884369.1;Name=WP_000884369.1;Ontology_term=GO:0019646,GO:0009055,GO:0070069;gbkey=CDS;gene=cydA;go_component=cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA;go_process=aerobic electron transport chain|0019646||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459725.1;locus_tag=C9F05_RS12620;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_000884369.1;transl_table=11
NZ_PYKE01000192.1	RefSeq	gene	2186	3325	.	+	.	ID=gene-C9F05_RS12625;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=C9F05_RS12625;old_locus_tag=C9F05_12995
NZ_PYKE01000192.1	Protein Homology	CDS	2186	3325	.	+	0	ID=cds-WP_000568258.1;Parent=gene-C9F05_RS12625;Dbxref=GenBank:WP_000568258.1;Name=WP_000568258.1;Ontology_term=GO:0016020;gbkey=CDS;gene=cydB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000568269.1;locus_tag=C9F05_RS12625;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_000568258.1;transl_table=11
NZ_PYKE01000192.1	RefSeq	gene	3340	3453	.	+	.	ID=gene-C9F05_RS12630;Name=cydX;gbkey=Gene;gene=cydX;gene_biotype=protein_coding;gene_synonym=ybgT;locus_tag=C9F05_RS12630;old_locus_tag=C9F05_13000
NZ_PYKE01000192.1	Protein Homology	CDS	3340	3453	.	+	0	ID=cds-WP_000270278.1;Parent=gene-C9F05_RS12630;Dbxref=GenBank:WP_000270278.1;Name=WP_000270278.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydX;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459727.1;locus_tag=C9F05_RS12630;product=cytochrome bd-I oxidase subunit CydX;protein_id=WP_000270278.1;transl_table=11
NZ_PYKE01000192.1	RefSeq	gene	3453	3746	.	+	.	ID=gene-C9F05_RS12635;Name=ybgE;gbkey=Gene;gene=ybgE;gene_biotype=protein_coding;locus_tag=C9F05_RS12635;old_locus_tag=C9F05_13005
NZ_PYKE01000192.1	Protein Homology	CDS	3453	3746	.	+	0	ID=cds-WP_000148790.1;Parent=gene-C9F05_RS12635;Dbxref=GenBank:WP_000148790.1;Name=WP_000148790.1;gbkey=CDS;gene=ybgE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006712473.1;locus_tag=C9F05_RS12635;product=cyd operon protein YbgE;protein_id=WP_000148790.1;transl_table=11
NZ_PYKE01000192.1	RefSeq	gene	3975	4379	.	+	.	ID=gene-C9F05_RS12640;Name=ybgC;gbkey=Gene;gene=ybgC;gene_biotype=protein_coding;locus_tag=C9F05_RS12640;old_locus_tag=C9F05_13010
NZ_PYKE01000192.1	Protein Homology	CDS	3975	4379	.	+	0	ID=cds-WP_001046240.1;Parent=gene-C9F05_RS12640;Dbxref=GenBank:WP_001046240.1;Name=WP_001046240.1;gbkey=CDS;gene=ybgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459729.1;locus_tag=C9F05_RS12640;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_001046240.1;transl_table=11
NZ_PYKE01000192.1	RefSeq	gene	4376	5068	.	+	.	ID=gene-C9F05_RS12645;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=C9F05_RS12645;old_locus_tag=C9F05_13015
NZ_PYKE01000192.1	Protein Homology	CDS	4376	5068	.	+	0	ID=cds-WP_000131318.1;Parent=gene-C9F05_RS12645;Dbxref=GenBank:WP_000131318.1;Name=WP_000131318.1;gbkey=CDS;gene=tolQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459730.1;locus_tag=C9F05_RS12645;product=Tol-Pal system protein TolQ;protein_id=WP_000131318.1;transl_table=11
NZ_PYKE01000192.1	RefSeq	gene	5072	5500	.	+	.	ID=gene-C9F05_RS12650;Name=tolR;gbkey=Gene;gene=tolR;gene_biotype=protein_coding;locus_tag=C9F05_RS12650;old_locus_tag=C9F05_13020
NZ_PYKE01000192.1	Protein Homology	CDS	5072	5500	.	+	0	ID=cds-WP_000124676.1;Parent=gene-C9F05_RS12650;Dbxref=GenBank:WP_000124676.1;Name=WP_000124676.1;gbkey=CDS;gene=tolR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965300.1;locus_tag=C9F05_RS12650;product=colicin uptake protein TolR;protein_id=WP_000124676.1;transl_table=11
NZ_PYKE01000192.1	RefSeq	gene	5565	5998	.	+	.	ID=gene-C9F05_RS12655;Name=tolA;end_range=5998,.;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=C9F05_RS12655;old_locus_tag=C9F05_13025;partial=true
NZ_PYKE01000192.1	Protein Homology	CDS	5565	5998	.	+	0	ID=cds-WP_023228241.1;Parent=gene-C9F05_RS12655;Dbxref=GenBank:WP_023228241.1;Name=WP_023228241.1;Ontology_term=GO:0043213,GO:0019534,GO:0016020;end_range=5998,.;gbkey=CDS;gene=tolA;go_component=membrane|0016020||IEA;go_function=toxin transmembrane transporter activity|0019534||IEA;go_process=bacteriocin transport|0043213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459732.1;locus_tag=C9F05_RS12655;partial=true;product=cell envelope integrity protein TolA;protein_id=WP_023228241.1;transl_table=11
##sequence-region NZ_PYKE01000296.1 1 33432
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000296.1	RefSeq	region	1	33432	.	+	.	ID=NZ_PYKE01000296.1:1..33432;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000296.1	RefSeq	gene	413	943	.	-	.	ID=gene-C9F05_RS20165;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=C9F05_RS20165;old_locus_tag=C9F05_20735
NZ_PYKE01000296.1	Protein Homology	CDS	413	943	.	-	0	ID=cds-WP_000055079.1;Parent=gene-C9F05_RS20165;Dbxref=GenBank:WP_000055079.1;Name=WP_000055079.1;Ontology_term=GO:0006796,GO:0004427;gbkey=CDS;gene=ppa;go_function=inorganic diphosphate phosphatase activity|0004427||IEA;go_process=phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001739810.1;locus_tag=C9F05_RS20165;product=inorganic diphosphatase;protein_id=WP_000055079.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	1170	2168	.	-	.	ID=gene-C9F05_RS20170;Name=fbp;gbkey=Gene;gene=fbp;gene_biotype=protein_coding;locus_tag=C9F05_RS20170;old_locus_tag=C9F05_20740
NZ_PYKE01000296.1	Protein Homology	CDS	1170	2168	.	-	0	ID=cds-WP_000853764.1;Parent=gene-C9F05_RS20170;Dbxref=GenBank:WP_000853764.1;Name=WP_000853764.1;Ontology_term=GO:0005975,GO:0042132;gbkey=CDS;gene=fbp;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233757.1;locus_tag=C9F05_RS20170;product=class 1 fructose-bisphosphatase;protein_id=WP_000853764.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	2343	3716	.	+	.	ID=gene-C9F05_RS20175;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=C9F05_RS20175;old_locus_tag=C9F05_20745
NZ_PYKE01000296.1	Protein Homology	CDS	2343	3716	.	+	0	ID=cds-WP_001219832.1;Parent=gene-C9F05_RS20175;Dbxref=GenBank:WP_001219832.1;Name=WP_001219832.1;Ontology_term=GO:0009252,GO:0071555,GO:0016881;gbkey=CDS;gene=mpl;go_function=acid-amino acid ligase activity|0016881||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001219850.1;locus_tag=C9F05_RS20175;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_001219832.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	3823	4374	.	-	.	ID=gene-C9F05_RS20185;Name=yjgA;gbkey=Gene;gene=yjgA;gene_biotype=protein_coding;locus_tag=C9F05_RS20185;old_locus_tag=C9F05_20750
NZ_PYKE01000296.1	Protein Homology	CDS	3823	4374	.	-	0	ID=cds-WP_000166287.1;Parent=gene-C9F05_RS20185;Dbxref=GenBank:WP_000166287.1;Name=WP_000166287.1;Ontology_term=GO:0042254;gbkey=CDS;gene=yjgA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463298.1;locus_tag=C9F05_RS20185;product=ribosome biogenesis factor YjgA;protein_id=WP_000166287.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	4470	5822	.	+	.	ID=gene-C9F05_RS20190;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=C9F05_RS20190;old_locus_tag=C9F05_20755
NZ_PYKE01000296.1	Protein Homology	CDS	4470	5822	.	+	0	ID=cds-WP_000852994.1;Parent=gene-C9F05_RS20190;Dbxref=GenBank:WP_000852994.1;Name=WP_000852994.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=pmbA;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463299.1;locus_tag=C9F05_RS20190;product=metalloprotease PmbA;protein_id=WP_000852994.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	5921	6307	.	+	.	ID=gene-C9F05_RS20195;Name=cybC;gbkey=Gene;gene=cybC;gene_biotype=protein_coding;locus_tag=C9F05_RS20195;old_locus_tag=C9F05_20760
NZ_PYKE01000296.1	Protein Homology	CDS	5921	6307	.	+	0	ID=cds-WP_001232231.1;Parent=gene-C9F05_RS20195;Dbxref=GenBank:WP_001232231.1;Name=WP_001232231.1;Ontology_term=GO:0022900,GO:0005506,GO:0009055,GO:0042597;gbkey=CDS;gene=cybC;go_component=periplasmic space|0042597||IEA;go_function=iron ion binding|0005506||IEA,electron transfer activity|0009055||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463300.1;locus_tag=C9F05_RS20195;product=cytochrome b562;protein_id=WP_001232231.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	6585	6923	.	+	.	ID=gene-C9F05_RS20200;Name=C9F05_RS20200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20200;old_locus_tag=C9F05_20765
NZ_PYKE01000296.1	Protein Homology	CDS	6585	6923	.	+	0	ID=cds-WP_135370579.1;Parent=gene-C9F05_RS20200;Dbxref=GenBank:WP_135370579.1;Name=WP_135370579.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463301.1;locus_tag=C9F05_RS20200;product=glycine dehydrogenase;protein_id=WP_135370579.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	6934	7296	.	+	.	ID=gene-C9F05_RS20205;Name=C9F05_RS20205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20205;old_locus_tag=C9F05_20770
NZ_PYKE01000296.1	Protein Homology	CDS	6934	7296	.	+	0	ID=cds-WP_000435389.1;Parent=gene-C9F05_RS20205;Dbxref=GenBank:WP_000435389.1;Name=WP_000435389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463302.1;locus_tag=C9F05_RS20205;product=SFCGS family glycine-rich protein;protein_id=WP_000435389.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	7296	7598	.	+	.	ID=gene-C9F05_RS20210;Name=C9F05_RS20210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20210;old_locus_tag=C9F05_20775
NZ_PYKE01000296.1	Protein Homology	CDS	7296	7598	.	+	0	ID=cds-WP_000975187.1;Parent=gene-C9F05_RS20210;Dbxref=GenBank:WP_000975187.1;Name=WP_000975187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463303.1;locus_tag=C9F05_RS20210;product=DUF4312 family protein;protein_id=WP_000975187.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	7621	8397	.	+	.	ID=gene-C9F05_RS20215;Name=C9F05_RS20215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20215;old_locus_tag=C9F05_20780
NZ_PYKE01000296.1	Protein Homology	CDS	7621	8397	.	+	0	ID=cds-WP_000478578.1;Parent=gene-C9F05_RS20215;Dbxref=GenBank:WP_000478578.1;Name=WP_000478578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463304.1;locus_tag=C9F05_RS20215;product=DUF4311 domain-containing protein;protein_id=WP_000478578.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	8409	9053	.	+	.	ID=gene-C9F05_RS20220;Name=C9F05_RS20220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20220;old_locus_tag=C9F05_20785
NZ_PYKE01000296.1	Protein Homology	CDS	8409	9053	.	+	0	ID=cds-WP_000392127.1;Parent=gene-C9F05_RS20220;Dbxref=GenBank:WP_000392127.1;Name=WP_000392127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463305.1;locus_tag=C9F05_RS20220;product=DUF4310 family protein;protein_id=WP_000392127.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	9112	10245	.	+	.	ID=gene-C9F05_RS20225;Name=C9F05_RS20225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20225;old_locus_tag=C9F05_20790
NZ_PYKE01000296.1	Protein Homology	CDS	9112	10245	.	+	0	ID=cds-WP_135370580.1;Parent=gene-C9F05_RS20225;Dbxref=GenBank:WP_135370580.1;Name=WP_135370580.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463306.1;locus_tag=C9F05_RS20225;product=amidohydrolase/deacetylase family metallohydrolase;protein_id=WP_135370580.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	10229	11347	.	+	.	ID=gene-C9F05_RS20230;Name=C9F05_RS20230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20230;old_locus_tag=C9F05_20795
NZ_PYKE01000296.1	Protein Homology	CDS	10229	11347	.	+	0	ID=cds-WP_135370581.1;Parent=gene-C9F05_RS20230;Dbxref=GenBank:WP_135370581.1;Name=WP_135370581.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463307.1;locus_tag=C9F05_RS20230;product=DgaE family pyridoxal phosphate-dependent ammonia lyase;protein_id=WP_135370581.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	11344	12084	.	+	.	ID=gene-C9F05_RS20235;Name=dagF;gbkey=Gene;gene=dagF;gene_biotype=protein_coding;locus_tag=C9F05_RS20235;old_locus_tag=C9F05_20800
NZ_PYKE01000296.1	Protein Homology	CDS	11344	12084	.	+	0	ID=cds-WP_080087689.1;Parent=gene-C9F05_RS20235;Dbxref=GenBank:WP_080087689.1;Name=WP_080087689.1;Ontology_term=GO:0008675;gbkey=CDS;gene=dagF;go_function=2-dehydro-3-deoxy-phosphogluconate aldolase activity|0008675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463308.2;locus_tag=C9F05_RS20235;product=2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_080087689.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	12101	14014	.	+	.	ID=gene-C9F05_RS20240;Name=C9F05_RS20240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20240;old_locus_tag=C9F05_20805
NZ_PYKE01000296.1	Protein Homology	CDS	12101	14014	.	+	0	ID=cds-WP_001212131.1;Parent=gene-C9F05_RS20240;Dbxref=GenBank:WP_001212131.1;Name=WP_001212131.1;Ontology_term=GO:0006355,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463309.1;locus_tag=C9F05_RS20240;product=BglG family transcription antiterminator;protein_id=WP_001212131.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	14092	14334	.	+	.	ID=gene-C9F05_RS20245;Name=C9F05_RS20245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20245;old_locus_tag=C9F05_20810
NZ_PYKE01000296.1	Protein Homology	CDS	14092	14334	.	+	0	ID=cds-WP_000212724.1;Parent=gene-C9F05_RS20245;Dbxref=GenBank:WP_000212724.1;Name=WP_000212724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463310.1;locus_tag=C9F05_RS20245;product=type II toxin-antitoxin system RelB/DinJ family antitoxin;protein_id=WP_000212724.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	14324	14608	.	+	.	ID=gene-C9F05_RS20250;Name=C9F05_RS20250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20250;old_locus_tag=C9F05_20815
NZ_PYKE01000296.1	Protein Homology	CDS	14324	14608	.	+	0	ID=cds-WP_000220578.1;Parent=gene-C9F05_RS20250;Dbxref=GenBank:WP_000220578.1;Name=WP_000220578.1;Ontology_term=GO:0017148,GO:0004521,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=RNA endonuclease activity|0004521||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463311.1;locus_tag=C9F05_RS20250;product=type II toxin-antitoxin system RelE family toxin;protein_id=WP_000220578.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	14612	15076	.	-	.	ID=gene-C9F05_RS20255;Name=nrdG;gbkey=Gene;gene=nrdG;gene_biotype=protein_coding;locus_tag=C9F05_RS20255;old_locus_tag=C9F05_20820
NZ_PYKE01000296.1	Protein Homology	CDS	14612	15076	.	-	0	ID=cds-WP_020898293.1;Parent=gene-C9F05_RS20255;Dbxref=GenBank:WP_020898293.1;Name=WP_020898293.1;Ontology_term=GO:0043365,GO:0051539;gbkey=CDS;gene=nrdG;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463312.1;locus_tag=C9F05_RS20255;product=anaerobic ribonucleoside-triphosphate reductase-activating protein;protein_id=WP_020898293.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	15197	17335	.	-	.	ID=gene-C9F05_RS20260;Name=nrdD;gbkey=Gene;gene=nrdD;gene_biotype=protein_coding;locus_tag=C9F05_RS20260;old_locus_tag=C9F05_20825
NZ_PYKE01000296.1	Protein Homology	CDS	15197	17335	.	-	0	ID=cds-WP_000187818.1;Parent=gene-C9F05_RS20260;Dbxref=GenBank:WP_000187818.1;Name=WP_000187818.1;Ontology_term=GO:0006260,GO:0008998;gbkey=CDS;gene=nrdD;go_function=ribonucleoside-triphosphate reductase (thioredoxin) activity|0008998||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463313.1;locus_tag=C9F05_RS20260;product=anaerobic ribonucleoside-triphosphate reductase;protein_id=WP_000187818.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	17744	19396	.	-	.	ID=gene-C9F05_RS20265;Name=treC;gbkey=Gene;gene=treC;gene_biotype=protein_coding;locus_tag=C9F05_RS20265;old_locus_tag=C9F05_20830
NZ_PYKE01000296.1	Protein Homology	CDS	17744	19396	.	-	0	ID=cds-WP_058331429.1;Parent=gene-C9F05_RS20265;Dbxref=GenBank:WP_058331429.1;Name=WP_058331429.1;Ontology_term=GO:0005991,GO:0008788,GO:0005737;gbkey=CDS;gene=treC;go_component=cytoplasm|0005737||IEA;go_function=alpha%2Calpha-phosphotrehalase activity|0008788||IEA;go_process=trehalose metabolic process|0005991||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463314.1;locus_tag=C9F05_RS20265;product=alpha%2Calpha-phosphotrehalase;protein_id=WP_058331429.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	19446	20864	.	-	.	ID=gene-C9F05_RS20270;Name=treB;gbkey=Gene;gene=treB;gene_biotype=protein_coding;locus_tag=C9F05_RS20270;old_locus_tag=C9F05_20835
NZ_PYKE01000296.1	Protein Homology	CDS	19446	20864	.	-	0	ID=cds-WP_023232255.1;Parent=gene-C9F05_RS20270;Dbxref=GenBank:WP_023232255.1;Name=WP_023232255.1;Ontology_term=GO:0009401,GO:0015771,GO:0008982,GO:0015574,GO:0016020;gbkey=CDS;gene=treB;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,trehalose transmembrane transporter activity|0015574||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,trehalose transport|0015771||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224799.1;locus_tag=C9F05_RS20270;product=PTS trehalose transporter subunit IIBC;protein_id=WP_023232255.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	21002	21949	.	-	.	ID=gene-C9F05_RS20275;Name=treR;gbkey=Gene;gene=treR;gene_biotype=protein_coding;locus_tag=C9F05_RS20275;old_locus_tag=C9F05_20840
NZ_PYKE01000296.1	Protein Homology	CDS	21002	21949	.	-	0	ID=cds-WP_001181297.1;Parent=gene-C9F05_RS20275;Dbxref=GenBank:WP_001181297.1;Name=WP_001181297.1;Ontology_term=GO:0005991,GO:0006355,GO:0045892,GO:0003677;gbkey=CDS;gene=treR;go_function=DNA binding|0003677||IEA;go_process=trehalose metabolic process|0005991||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463315.1;locus_tag=C9F05_RS20275;product=trehalose operon repressor TreR;protein_id=WP_001181297.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	22139	22192	.	+	.	ID=gene-C9F05_RS24075;Name=mgtL;gbkey=Gene;gene=mgtL;gene_biotype=protein_coding;locus_tag=C9F05_RS24075
NZ_PYKE01000296.1	Protein Homology	CDS	22139	22192	.	+	0	ID=cds-WP_099374030.1;Parent=gene-C9F05_RS24075;Dbxref=GenBank:WP_099374030.1;Name=WP_099374030.1;gbkey=CDS;gene=mgtL;inference=COORDINATES: protein motif:HMM:NF028369.6;locus_tag=C9F05_RS24075;product=mgtA regulatory leader peptide MgtL;protein_id=WP_099374030.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	22333	25041	.	+	.	ID=gene-C9F05_RS20285;Name=mgtA;gbkey=Gene;gene=mgtA;gene_biotype=protein_coding;locus_tag=C9F05_RS20285;old_locus_tag=C9F05_20845
NZ_PYKE01000296.1	Protein Homology	CDS	22333	25041	.	+	0	ID=cds-WP_000920862.1;Parent=gene-C9F05_RS20285;Dbxref=GenBank:WP_000920862.1;Name=WP_000920862.1;Ontology_term=GO:0015693,GO:0015444,GO:0016020;gbkey=CDS;gene=mgtA;go_component=membrane|0016020||IEA;go_function=P-type magnesium transporter activity|0015444||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463316.1;locus_tag=C9F05_RS20285;product=magnesium-translocating P-type ATPase;protein_id=WP_000920862.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	25157	25603	.	-	.	ID=gene-C9F05_RS20290;Name=C9F05_RS20290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20290;old_locus_tag=C9F05_20850
NZ_PYKE01000296.1	Protein Homology	CDS	25157	25603	.	-	0	ID=cds-WP_135370582.1;Parent=gene-C9F05_RS20290;Dbxref=GenBank:WP_135370582.1;Name=WP_135370582.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463317.1;locus_tag=C9F05_RS20290;product=transposase;protein_id=WP_135370582.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	25678	26064	.	-	.	ID=gene-C9F05_RS20295;Name=ridA;gbkey=Gene;gene=ridA;gene_biotype=protein_coding;locus_tag=C9F05_RS20295;old_locus_tag=C9F05_20855
NZ_PYKE01000296.1	Protein Homology	CDS	25678	26064	.	-	0	ID=cds-WP_000047544.1;Parent=gene-C9F05_RS20295;Dbxref=GenBank:WP_000047544.1;Name=WP_000047544.1;gbkey=CDS;gene=ridA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463318.1;locus_tag=C9F05_RS20295;product=2-iminobutanoate/2-iminopropanoate deaminase;protein_id=WP_000047544.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	26141	26602	.	-	.	ID=gene-C9F05_RS20300;Name=pyrI;gbkey=Gene;gene=pyrI;gene_biotype=protein_coding;locus_tag=C9F05_RS20300;old_locus_tag=C9F05_20860
NZ_PYKE01000296.1	Protein Homology	CDS	26141	26602	.	-	0	ID=cds-WP_000148567.1;Parent=gene-C9F05_RS20300;Dbxref=GenBank:WP_000148567.1;Name=WP_000148567.1;Ontology_term=GO:0006207,GO:0009347;gbkey=CDS;gene=pyrI;go_component=aspartate carbamoyltransferase complex|0009347||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000148566.1;locus_tag=C9F05_RS20300;product=aspartate carbamoyltransferase regulatory subunit;protein_id=WP_000148567.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	26615	27550	.	-	.	ID=gene-C9F05_RS20305;Name=pyrB;gbkey=Gene;gene=pyrB;gene_biotype=protein_coding;locus_tag=C9F05_RS20305;old_locus_tag=C9F05_20865
NZ_PYKE01000296.1	Protein Homology	CDS	26615	27550	.	-	0	ID=cds-WP_000013055.1;Parent=gene-C9F05_RS20305;Dbxref=GenBank:WP_000013055.1;Name=WP_000013055.1;Ontology_term=GO:0006207,GO:0004070;gbkey=CDS;gene=pyrB;go_function=aspartate carbamoyltransferase activity|0004070||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463320.1;locus_tag=C9F05_RS20305;product=aspartate carbamoyltransferase;protein_id=WP_000013055.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	pseudogene	27586	27686	.	-	.	ID=gene-C9F05_RS20310;Name=pyrL;gbkey=Gene;gene=pyrL;gene_biotype=pseudogene;locus_tag=C9F05_RS20310;old_locus_tag=C9F05_20870;pseudo=true
NZ_PYKE01000296.1	Protein Homology	CDS	27586	27686	.	-	0	ID=cds-C9F05_RS20310;Parent=gene-C9F05_RS20310;Note=frameshifted;gbkey=CDS;gene=pyrL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313250.1;locus_tag=C9F05_RS20310;product=pyr operon leader peptide;pseudo=true;transl_table=11
NZ_PYKE01000296.1	RefSeq	pseudogene	27666	27807	.	+	.	ID=gene-C9F05_RS20315;Name=C9F05_RS20315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS20315;old_locus_tag=C9F05_20875;pseudo=true
NZ_PYKE01000296.1	Protein Homology	CDS	27666	27807	.	+	0	ID=cds-C9F05_RS20315;Parent=gene-C9F05_RS20315;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453732.1;locus_tag=C9F05_RS20315;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	27777	28265	.	-	.	ID=gene-C9F05_RS20320;Name=C9F05_RS20320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20320;old_locus_tag=C9F05_20880
NZ_PYKE01000296.1	Protein Homology	CDS	27777	28265	.	-	0	ID=cds-WP_000666051.1;Parent=gene-C9F05_RS20320;Dbxref=GenBank:WP_000666051.1;Name=WP_000666051.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463323.1;locus_tag=C9F05_RS20320;product=arginine repressor;protein_id=WP_000666051.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	28452	29855	.	-	.	ID=gene-C9F05_RS20325;Name=C9F05_RS20325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20325;old_locus_tag=C9F05_20885
NZ_PYKE01000296.1	Protein Homology	CDS	28452	29855	.	-	0	ID=cds-WP_000514424.1;Parent=gene-C9F05_RS20325;Dbxref=GenBank:WP_000514424.1;Name=WP_000514424.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463324.1;locus_tag=C9F05_RS20325;product=YfcC family protein;protein_id=WP_000514424.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	29911	30915	.	-	.	ID=gene-C9F05_RS20330;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=C9F05_RS20330;old_locus_tag=C9F05_20890
NZ_PYKE01000296.1	Protein Homology	CDS	29911	30915	.	-	0	ID=cds-WP_000237031.1;Parent=gene-C9F05_RS20330;Dbxref=GenBank:WP_000237031.1;Name=WP_000237031.1;Ontology_term=GO:0042450,GO:0004585;gbkey=CDS;gene=argF;go_function=ornithine carbamoyltransferase activity|0004585||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463325.1;locus_tag=C9F05_RS20330;product=ornithine carbamoyltransferase;protein_id=WP_000237031.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	31027	31959	.	-	.	ID=gene-C9F05_RS20335;Name=arcC;gbkey=Gene;gene=arcC;gene_biotype=protein_coding;locus_tag=C9F05_RS20335;old_locus_tag=C9F05_20895
NZ_PYKE01000296.1	Protein Homology	CDS	31027	31959	.	-	0	ID=cds-WP_000428751.1;Parent=gene-C9F05_RS20335;Dbxref=GenBank:WP_000428751.1;Name=WP_000428751.1;Ontology_term=GO:0006520,GO:0008804;gbkey=CDS;gene=arcC;go_function=carbamate kinase activity|0008804||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463326.1;locus_tag=C9F05_RS20335;product=carbamate kinase;protein_id=WP_000428751.1;transl_table=11
NZ_PYKE01000296.1	RefSeq	gene	31970	33190	.	-	.	ID=gene-C9F05_RS20340;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=protein_coding;locus_tag=C9F05_RS20340;old_locus_tag=C9F05_20900
NZ_PYKE01000296.1	Protein Homology	CDS	31970	33190	.	-	0	ID=cds-WP_000410846.1;Parent=gene-C9F05_RS20340;Dbxref=GenBank:WP_000410846.1;Name=WP_000410846.1;Ontology_term=GO:0019546,GO:0016990;gbkey=CDS;gene=arcA;go_function=arginine deiminase activity|0016990||IEA;go_process=L-arginine deiminase pathway|0019546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463327.1;locus_tag=C9F05_RS20340;product=arginine deiminase;protein_id=WP_000410846.1;transl_table=11
##sequence-region NZ_PYKE01000230.1 1 5926
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000230.1	RefSeq	region	1	5926	.	+	.	ID=NZ_PYKE01000230.1:1..5926;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000230.1	RefSeq	gene	151	402	.	+	.	ID=gene-C9F05_RS14980;Name=C9F05_RS14980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14980;old_locus_tag=C9F05_15405
NZ_PYKE01000230.1	Protein Homology	CDS	151	402	.	+	0	ID=cds-WP_000042271.1;Parent=gene-C9F05_RS14980;Dbxref=GenBank:WP_000042271.1;Name=WP_000042271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002212204.1;locus_tag=C9F05_RS14980;product=hypothetical protein;protein_id=WP_000042271.1;transl_table=11
NZ_PYKE01000230.1	RefSeq	gene	469	1743	.	-	.	ID=gene-C9F05_RS14985;Name=C9F05_RS14985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14985;old_locus_tag=C9F05_15410
NZ_PYKE01000230.1	Protein Homology	CDS	469	1743	.	-	0	ID=cds-WP_135370425.1;Parent=gene-C9F05_RS14985;Dbxref=GenBank:WP_135370425.1;Name=WP_135370425.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001751368.1;locus_tag=C9F05_RS14985;product=tyrosine-type recombinase/integrase;protein_id=WP_135370425.1;transl_table=11
NZ_PYKE01000230.1	RefSeq	gene	1923	1998	.	-	.	ID=gene-C9F05_RS14990;Name=C9F05_RS14990;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS14990;old_locus_tag=C9F05_15415
NZ_PYKE01000230.1	tRNAscan-SE	tRNA	1923	1998	.	-	.	ID=rna-C9F05_RS14990;Parent=gene-C9F05_RS14990;anticodon=(pos:complement(1963..1965));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS14990;product=tRNA-Asn
NZ_PYKE01000230.1	tRNAscan-SE	exon	1923	1998	.	-	.	ID=exon-C9F05_RS14990-1;Parent=rna-C9F05_RS14990;anticodon=(pos:complement(1963..1965));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS14990;product=tRNA-Asn
NZ_PYKE01000230.1	RefSeq	pseudogene	2420	2725	.	-	.	ID=gene-C9F05_RS14995;Name=C9F05_RS14995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS14995;old_locus_tag=C9F05_15420;partial=true;pseudo=true;start_range=.,2420
NZ_PYKE01000230.1	Protein Homology	CDS	2420	2725	.	-	0	ID=cds-C9F05_RS14995;Parent=gene-C9F05_RS14995;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001751368.1;locus_tag=C9F05_RS14995;partial=true;product=Arm DNA-binding domain-containing protein;pseudo=true;start_range=.,2420;transl_table=11
NZ_PYKE01000230.1	RefSeq	gene	2893	2968	.	-	.	ID=gene-C9F05_RS15000;Name=C9F05_RS15000;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS15000;old_locus_tag=C9F05_15425
NZ_PYKE01000230.1	tRNAscan-SE	tRNA	2893	2968	.	-	.	ID=rna-C9F05_RS15000;Parent=gene-C9F05_RS15000;anticodon=(pos:complement(2933..2935));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15000;product=tRNA-Asn
NZ_PYKE01000230.1	tRNAscan-SE	exon	2893	2968	.	-	.	ID=exon-C9F05_RS15000-1;Parent=rna-C9F05_RS15000;anticodon=(pos:complement(2933..2935));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15000;product=tRNA-Asn
NZ_PYKE01000230.1	RefSeq	gene	3069	3866	.	-	.	ID=gene-C9F05_RS15005;Name=mtfA;gbkey=Gene;gene=mtfA;gene_biotype=protein_coding;locus_tag=C9F05_RS15005;old_locus_tag=C9F05_15430
NZ_PYKE01000230.1	Protein Homology	CDS	3069	3866	.	-	0	ID=cds-WP_000598920.1;Parent=gene-C9F05_RS15005;Dbxref=GenBank:WP_000598920.1;Name=WP_000598920.1;Ontology_term=GO:0008237;gbkey=CDS;gene=mtfA;go_function=metallopeptidase activity|0008237||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460951.1;locus_tag=C9F05_RS15005;product=DgsA anti-repressor MtfA;protein_id=WP_000598920.1;transl_table=11
NZ_PYKE01000230.1	RefSeq	gene	3955	4044	.	+	.	ID=gene-C9F05_RS15010;Name=C9F05_RS15010;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS15010;old_locus_tag=C9F05_15435
NZ_PYKE01000230.1	tRNAscan-SE	tRNA	3955	4044	.	+	.	ID=rna-C9F05_RS15010;Parent=gene-C9F05_RS15010;anticodon=(pos:3989..3991);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15010;product=tRNA-Ser
NZ_PYKE01000230.1	tRNAscan-SE	exon	3955	4044	.	+	.	ID=exon-C9F05_RS15010-1;Parent=rna-C9F05_RS15010;anticodon=(pos:3989..3991);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15010;product=tRNA-Ser
NZ_PYKE01000230.1	RefSeq	pseudogene	4335	4445	.	+	.	ID=gene-C9F05_RS24180;Name=C9F05_RS24180;end_range=4445,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24180;partial=true;pseudo=true;start_range=.,4335
NZ_PYKE01000230.1	Protein Homology	CDS	4335	4445	.	+	0	ID=cds-C9F05_RS24180;Parent=gene-C9F05_RS24180;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=4445,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000830395.1;locus_tag=C9F05_RS24180;partial=true;product=DUF6387 family protein;pseudo=true;start_range=.,4335;transl_table=11
NZ_PYKE01000230.1	RefSeq	gene	5062	5880	.	+	.	ID=gene-C9F05_RS15025;Name=C9F05_RS15025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15025;old_locus_tag=C9F05_15450
NZ_PYKE01000230.1	Protein Homology	CDS	5062	5880	.	+	0	ID=cds-WP_031605455.1;Parent=gene-C9F05_RS15025;Dbxref=GenBank:WP_031605455.1;Name=WP_031605455.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001176774.1;locus_tag=C9F05_RS15025;product=hypothetical protein;protein_id=WP_031605455.1;transl_table=11
##sequence-region NZ_PYKE01000043.1 1 5851
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000043.1	RefSeq	region	1	5851	.	+	.	ID=NZ_PYKE01000043.1:1..5851;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000043.1	RefSeq	gene	887	1108	.	-	.	ID=gene-C9F05_RS03005;Name=C9F05_RS03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03005;old_locus_tag=C9F05_03055
NZ_PYKE01000043.1	Protein Homology	CDS	887	1108	.	-	0	ID=cds-WP_000825645.1;Parent=gene-C9F05_RS03005;Dbxref=GenBank:WP_000825645.1;Name=WP_000825645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462302.1;locus_tag=C9F05_RS03005;product=membrane protein;protein_id=WP_000825645.1;transl_table=11
NZ_PYKE01000043.1	RefSeq	gene	1345	4458	.	-	.	ID=gene-C9F05_RS03010;Name=C9F05_RS03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03010;old_locus_tag=C9F05_03060
NZ_PYKE01000043.1	Protein Homology	CDS	1345	4458	.	-	0	ID=cds-WP_001273283.1;Parent=gene-C9F05_RS03010;Dbxref=GenBank:WP_001273283.1;Name=WP_001273283.1;Ontology_term=GO:0042908,GO:0015562,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462301.1;locus_tag=C9F05_RS03010;product=efflux RND transporter permease subunit;protein_id=WP_001273283.1;transl_table=11
NZ_PYKE01000043.1	RefSeq	gene	4470	5627	.	-	.	ID=gene-C9F05_RS03015;Name=C9F05_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03015;old_locus_tag=C9F05_03065
NZ_PYKE01000043.1	Protein Homology	CDS	4470	5627	.	-	0	ID=cds-WP_000160383.1;Parent=gene-C9F05_RS03015;Dbxref=GenBank:WP_000160383.1;Name=WP_000160383.1;Ontology_term=GO:0006810,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462300.1;locus_tag=C9F05_RS03015;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_000160383.1;transl_table=11
##sequence-region NZ_PYKE01000257.1 1 32784
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000257.1	RefSeq	region	1	32784	.	+	.	ID=NZ_PYKE01000257.1:1..32784;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000257.1	RefSeq	gene	1	660	.	-	.	ID=gene-C9F05_RS16745;Name=C9F05_RS16745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16745;old_locus_tag=C9F05_17235;partial=true;start_range=.,1
NZ_PYKE01000257.1	Protein Homology	CDS	1	660	.	-	0	ID=cds-WP_135370480.1;Parent=gene-C9F05_RS16745;Dbxref=GenBank:WP_135370480.1;Name=WP_135370480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000406820.1;locus_tag=C9F05_RS16745;partial=true;product=hypothetical protein;protein_id=WP_135370480.1;start_range=.,1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	895	2019	.	-	.	ID=gene-C9F05_RS16750;Name=C9F05_RS16750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16750;old_locus_tag=C9F05_17240
NZ_PYKE01000257.1	Protein Homology	CDS	895	2019	.	-	0	ID=cds-WP_135370481.1;Parent=gene-C9F05_RS16750;Dbxref=GenBank:WP_135370481.1;Name=WP_135370481.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462984.1;locus_tag=C9F05_RS16750;product=cytoplasmic protein;protein_id=WP_135370481.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	2155	3711	.	+	.	ID=gene-C9F05_RS16755;Name=C9F05_RS16755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16755;old_locus_tag=C9F05_17245
NZ_PYKE01000257.1	Protein Homology	CDS	2155	3711	.	+	0	ID=cds-WP_135370482.1;Parent=gene-C9F05_RS16755;Dbxref=GenBank:WP_135370482.1;Name=WP_135370482.1;Ontology_term=GO:0009166,GO:0000166,GO:0008253,GO:0042578,GO:0046872;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,5'-nucleotidase activity|0008253||IEA,phosphoric ester hydrolase activity|0042578||IEA,metal ion binding|0046872||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462985.1;locus_tag=C9F05_RS16755;product=bifunctional metallophosphatase/5'-nucleotidase;protein_id=WP_135370482.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	3976	5214	.	+	.	ID=gene-C9F05_RS16760;Name=C9F05_RS16760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16760;old_locus_tag=C9F05_17250
NZ_PYKE01000257.1	Protein Homology	CDS	3976	5214	.	+	0	ID=cds-WP_167851649.1;Parent=gene-C9F05_RS16760;Dbxref=GenBank:WP_167851649.1;Name=WP_167851649.1;Ontology_term=GO:0019264,GO:0004372,GO:0030170;gbkey=CDS;go_function=glycine hydroxymethyltransferase activity|0004372||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=glycine biosynthetic process from serine|0019264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014341216.1;locus_tag=C9F05_RS16760;product=serine hydroxymethyltransferase;protein_id=WP_167851649.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	5211	6317	.	+	.	ID=gene-C9F05_RS16765;Name=C9F05_RS16765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16765;old_locus_tag=C9F05_17255
NZ_PYKE01000257.1	Protein Homology	CDS	5211	6317	.	+	0	ID=cds-WP_135370483.1;Parent=gene-C9F05_RS16765;Dbxref=GenBank:WP_135370483.1;Name=WP_135370483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000976816.1;locus_tag=C9F05_RS16765;product=alanine racemase;protein_id=WP_135370483.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	6262	7743	.	-	.	ID=gene-C9F05_RS16770;Name=pdxR;gbkey=Gene;gene=pdxR;gene_biotype=protein_coding;locus_tag=C9F05_RS16770;old_locus_tag=C9F05_17260
NZ_PYKE01000257.1	Protein Homology	CDS	6262	7743	.	-	0	ID=cds-WP_135370484.1;Parent=gene-C9F05_RS16770;Dbxref=GenBank:WP_135370484.1;Name=WP_135370484.1;Ontology_term=GO:0042823,GO:2000142,GO:0070279;gbkey=CDS;gene=pdxR;go_function=vitamin B6 binding|0070279||IEA;go_process=pyridoxal phosphate biosynthetic process|0042823||IEA,regulation of DNA-templated transcription initiation|2000142||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001090461.1;locus_tag=C9F05_RS16770;product=MocR-like pyridoxine biosynthesis transcription factor PdxR;protein_id=WP_135370484.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	8022	8912	.	+	.	ID=gene-C9F05_RS16780;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=C9F05_RS16780;old_locus_tag=C9F05_17270
NZ_PYKE01000257.1	Protein Homology	CDS	8022	8912	.	+	0	ID=cds-WP_000007508.1;Parent=gene-C9F05_RS16780;Dbxref=GenBank:WP_000007508.1;Name=WP_000007508.1;Ontology_term=GO:0009086,GO:0004489;gbkey=CDS;gene=metF;go_function=methylenetetrahydrofolate reductase [NAD(P)H] activity|0004489||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462986.1;locus_tag=C9F05_RS16780;product=methylenetetrahydrofolate reductase;protein_id=WP_000007508.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	9077	11257	.	+	.	ID=gene-C9F05_RS16785;Name=katG;gbkey=Gene;gene=katG;gene_biotype=protein_coding;locus_tag=C9F05_RS16785;old_locus_tag=C9F05_17275
NZ_PYKE01000257.1	Protein Homology	CDS	9077	11257	.	+	0	ID=cds-WP_000108103.1;Parent=gene-C9F05_RS16785;Dbxref=GenBank:WP_000108103.1;Name=WP_000108103.1;Ontology_term=GO:0006979,GO:0004096,GO:0004601,GO:0020037;gbkey=CDS;gene=katG;go_function=catalase activity|0004096||IEA,peroxidase activity|0004601||IEA,heme binding|0020037||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462987.1;locus_tag=C9F05_RS16785;product=catalase/peroxidase HPI;protein_id=WP_000108103.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	11315	11938	.	-	.	ID=gene-C9F05_RS16790;Name=C9F05_RS16790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16790;old_locus_tag=C9F05_17280
NZ_PYKE01000257.1	Protein Homology	CDS	11315	11938	.	-	0	ID=cds-WP_000666689.1;Parent=gene-C9F05_RS16790;Dbxref=GenBank:WP_000666689.1;Name=WP_000666689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462988.1;locus_tag=C9F05_RS16790;product=DUF1287 domain-containing protein;protein_id=WP_000666689.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	12197	13300	.	-	.	ID=gene-C9F05_RS16795;Name=gldA;gbkey=Gene;gene=gldA;gene_biotype=protein_coding;locus_tag=C9F05_RS16795;old_locus_tag=C9F05_17285
NZ_PYKE01000257.1	Protein Homology	CDS	12197	13300	.	-	0	ID=cds-WP_000374031.1;Parent=gene-C9F05_RS16795;Dbxref=GenBank:WP_000374031.1;Name=WP_000374031.1;Ontology_term=GO:0019588,GO:0051596,GO:0008888,GO:0019147;gbkey=CDS;gene=gldA;go_function=glycerol dehydrogenase (NAD+) activity|0008888||IEA,(R)-aminopropanol dehydrogenase activity|0019147||IEA;go_process=anaerobic glycerol catabolic process|0019588||IEA,methylglyoxal catabolic process|0051596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462989.1;locus_tag=C9F05_RS16795;product=bifunctional L-1%2C2-propanediol dehydrogenase/glycerol dehydrogenase;protein_id=WP_000374031.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	13312	13974	.	-	.	ID=gene-C9F05_RS16800;Name=fsa;gbkey=Gene;gene=fsa;gene_biotype=protein_coding;locus_tag=C9F05_RS16800;old_locus_tag=C9F05_17290
NZ_PYKE01000257.1	Protein Homology	CDS	13312	13974	.	-	0	ID=cds-WP_000424866.1;Parent=gene-C9F05_RS16800;Dbxref=GenBank:WP_000424866.1;Name=WP_000424866.1;Ontology_term=GO:0005975,GO:0016832;gbkey=CDS;gene=fsa;go_function=aldehyde-lyase activity|0016832||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462990.1;locus_tag=C9F05_RS16800;product=fructose-6-phosphate aldolase;protein_id=WP_000424866.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	14229	15065	.	-	.	ID=gene-C9F05_RS16805;Name=C9F05_RS16805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16805;old_locus_tag=C9F05_17295
NZ_PYKE01000257.1	Protein Homology	CDS	14229	15065	.	-	0	ID=cds-WP_000274592.1;Parent=gene-C9F05_RS16805;Dbxref=GenBank:WP_000274592.1;Name=WP_000274592.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506508.1;locus_tag=C9F05_RS16805;product=helix-turn-helix transcriptional regulator;protein_id=WP_000274592.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	15226	16959	.	-	.	ID=gene-C9F05_RS16810;Name=C9F05_RS16810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16810;old_locus_tag=C9F05_17300
NZ_PYKE01000257.1	Protein Homology	CDS	15226	16959	.	-	0	ID=cds-WP_001528929.1;Parent=gene-C9F05_RS16810;Dbxref=GenBank:WP_001528929.1;Name=WP_001528929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462998.1;locus_tag=C9F05_RS16810;product=phosphoethanolamine transferase CptA;protein_id=WP_001528929.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	17170	19821	.	-	.	ID=gene-C9F05_RS16815;Name=ppc;gbkey=Gene;gene=ppc;gene_biotype=protein_coding;locus_tag=C9F05_RS16815;old_locus_tag=C9F05_17305
NZ_PYKE01000257.1	Protein Homology	CDS	17170	19821	.	-	0	ID=cds-WP_001005548.1;Parent=gene-C9F05_RS16815;Dbxref=GenBank:WP_001005548.1;Name=WP_001005548.1;Ontology_term=GO:0006099,GO:0015977,GO:0008964;gbkey=CDS;gene=ppc;go_function=phosphoenolpyruvate carboxylase activity|0008964||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,carbon fixation|0015977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004203687.1;locus_tag=C9F05_RS16815;product=phosphoenolpyruvate carboxylase;protein_id=WP_001005548.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	20190	21341	.	-	.	ID=gene-C9F05_RS16820;Name=argE;gbkey=Gene;gene=argE;gene_biotype=protein_coding;locus_tag=C9F05_RS16820;old_locus_tag=C9F05_17315
NZ_PYKE01000257.1	Protein Homology	CDS	20190	21341	.	-	0	ID=cds-WP_000800208.1;Parent=gene-C9F05_RS16820;Dbxref=GenBank:WP_000800208.1;Name=WP_000800208.1;Ontology_term=GO:0006526,GO:0019213;gbkey=CDS;gene=argE;go_function=deacetylase activity|0019213||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463000.1;locus_tag=C9F05_RS16820;product=acetylornithine deacetylase;protein_id=WP_000800208.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	21430	22434	.	+	.	ID=gene-C9F05_RS16825;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=C9F05_RS16825;old_locus_tag=C9F05_17320
NZ_PYKE01000257.1	Protein Homology	CDS	21430	22434	.	+	0	ID=cds-WP_000935332.1;Parent=gene-C9F05_RS16825;Dbxref=GenBank:WP_000935332.1;Name=WP_000935332.1;Ontology_term=GO:0006526,GO:0006592,GO:0003942,GO:0070401;gbkey=CDS;gene=argC;go_function=N-acetyl-gamma-glutamyl-phosphate reductase activity|0003942||IEA,NADP+ binding|0070401||IEA;go_process=L-arginine biosynthetic process|0006526||IEA,ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122770.1;locus_tag=C9F05_RS16825;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_000935332.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	22442	23218	.	+	.	ID=gene-C9F05_RS16830;Name=argB;gbkey=Gene;gene=argB;gene_biotype=protein_coding;locus_tag=C9F05_RS16830;old_locus_tag=C9F05_17325
NZ_PYKE01000257.1	Protein Homology	CDS	22442	23218	.	+	0	ID=cds-WP_001575262.1;Parent=gene-C9F05_RS16830;Dbxref=GenBank:WP_001575262.1;Name=WP_001575262.1;Ontology_term=GO:0006592,GO:0003991,GO:0005737;gbkey=CDS;gene=argB;go_component=cytoplasm|0005737||IEA;go_function=acetylglutamate kinase activity|0003991||IEA;go_process=ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463002.3;locus_tag=C9F05_RS16830;product=acetylglutamate kinase;protein_id=WP_001575262.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	23336	24712	.	+	.	ID=gene-C9F05_RS16835;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=C9F05_RS16835;old_locus_tag=C9F05_17330
NZ_PYKE01000257.1	Protein Homology	CDS	23336	24712	.	+	0	ID=cds-WP_001230054.1;Parent=gene-C9F05_RS16835;Dbxref=GenBank:WP_001230054.1;Name=WP_001230054.1;Ontology_term=GO:0042450,GO:0004056;gbkey=CDS;gene=argH;go_function=argininosuccinate lyase activity|0004056||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463003.1;locus_tag=C9F05_RS16835;product=argininosuccinate lyase;protein_id=WP_001230054.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	24997	25914	.	+	.	ID=gene-C9F05_RS16845;Name=oxyR;gbkey=Gene;gene=oxyR;gene_biotype=protein_coding;locus_tag=C9F05_RS16845;old_locus_tag=C9F05_17340
NZ_PYKE01000257.1	Protein Homology	CDS	24997	25914	.	+	0	ID=cds-WP_001025919.1;Parent=gene-C9F05_RS16845;Dbxref=GenBank:WP_001025919.1;Name=WP_001025919.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=oxyR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016831323.1;locus_tag=C9F05_RS16845;product=DNA-binding transcriptional regulator OxyR;protein_id=WP_001025919.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	25897	27297	.	-	.	ID=gene-C9F05_RS16850;Name=sthA;gbkey=Gene;gene=sthA;gene_biotype=protein_coding;locus_tag=C9F05_RS16850;old_locus_tag=C9F05_17345
NZ_PYKE01000257.1	Protein Homology	CDS	25897	27297	.	-	0	ID=cds-WP_001120791.1;Parent=gene-C9F05_RS16850;Dbxref=GenBank:WP_001120791.1;Name=WP_001120791.1;Ontology_term=GO:0045454,GO:0003957,GO:0050660;gbkey=CDS;gene=sthA;go_function=NAD(P)+ transhydrogenase (Si-specific) activity|0003957||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463005.1;locus_tag=C9F05_RS16850;product=Si-specific NAD(P)(+) transhydrogenase;protein_id=WP_001120791.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	27496	28131	.	+	.	ID=gene-C9F05_RS16855;Name=fabR;gbkey=Gene;gene=fabR;gene_biotype=protein_coding;locus_tag=C9F05_RS16855;old_locus_tag=C9F05_17350
NZ_PYKE01000257.1	Protein Homology	CDS	27496	28131	.	+	0	ID=cds-WP_000971958.1;Parent=gene-C9F05_RS16855;Dbxref=GenBank:WP_000971958.1;Name=WP_000971958.1;Ontology_term=GO:0003677;gbkey=CDS;gene=fabR;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463006.3;locus_tag=C9F05_RS16855;product=HTH-type transcriptional repressor FabR;protein_id=WP_000971958.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	28147	28506	.	+	.	ID=gene-C9F05_RS16860;Name=C9F05_RS16860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16860;old_locus_tag=C9F05_17355
NZ_PYKE01000257.1	Protein Homology	CDS	28147	28506	.	+	0	ID=cds-WP_000813838.1;Parent=gene-C9F05_RS16860;Dbxref=GenBank:WP_000813838.1;Name=WP_000813838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463007.1;locus_tag=C9F05_RS16860;product=YijD family membrane protein;protein_id=WP_000813838.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	28553	29653	.	-	.	ID=gene-C9F05_RS16865;Name=trmA;gbkey=Gene;gene=trmA;gene_biotype=protein_coding;locus_tag=C9F05_RS16865;old_locus_tag=C9F05_17360
NZ_PYKE01000257.1	Protein Homology	CDS	28553	29653	.	-	0	ID=cds-WP_135370486.1;Parent=gene-C9F05_RS16865;Dbxref=GenBank:WP_135370486.1;Name=WP_135370486.1;Ontology_term=GO:0006396,GO:0030697;gbkey=CDS;gene=trmA;go_function=tRNA (uracil(54)-C5)-methyltransferase activity%2C S-adenosyl methionine-dependent|0030697||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463008.1;locus_tag=C9F05_RS16865;product=tRNA (uridine(54)-C5)-methyltransferase TrmA;protein_id=WP_135370486.1;transl_table=11
NZ_PYKE01000257.1	cmsearch	riboswitch	29768	29960	.	+	.	ID=id-NZ_PYKE01000257.1:29768..29960;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYKE01000257.1	RefSeq	gene	30027	31871	.	+	.	ID=gene-C9F05_RS16870;Name=btuB;gbkey=Gene;gene=btuB;gene_biotype=protein_coding;locus_tag=C9F05_RS16870;old_locus_tag=C9F05_17365
NZ_PYKE01000257.1	Protein Homology	CDS	30027	31871	.	+	0	ID=cds-WP_023195935.1;Parent=gene-C9F05_RS16870;Dbxref=GenBank:WP_023195935.1;Name=WP_023195935.1;Ontology_term=GO:0015889,GO:0015420;gbkey=CDS;gene=btuB;go_function=ABC-type vitamin B12 transporter activity|0015420||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463009.1;locus_tag=C9F05_RS16870;product=TonB-dependent vitamin B12 receptor BtuB;protein_id=WP_023195935.1;transl_table=11
NZ_PYKE01000257.1	RefSeq	gene	31816	32667	.	+	.	ID=gene-C9F05_RS16875;Name=murI;gbkey=Gene;gene=murI;gene_biotype=protein_coding;locus_tag=C9F05_RS16875;old_locus_tag=C9F05_17370
NZ_PYKE01000257.1	Protein Homology	CDS	31816	32667	.	+	0	ID=cds-WP_135370487.1;Parent=gene-C9F05_RS16875;Dbxref=GenBank:WP_135370487.1;Name=WP_135370487.1;Ontology_term=GO:0008152,GO:0008881;gbkey=CDS;gene=murI;go_function=glutamate racemase activity|0008881||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463010.1;locus_tag=C9F05_RS16875;product=glutamate racemase;protein_id=WP_135370487.1;transl_table=11
##sequence-region NZ_PYKE01000108.1 1 5706
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000108.1	RefSeq	region	1	5706	.	+	.	ID=NZ_PYKE01000108.1:1..5706;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000108.1	RefSeq	gene	548	1423	.	+	.	ID=gene-C9F05_RS07985;Name=pipB;gbkey=Gene;gene=pipB;gene_biotype=protein_coding;locus_tag=C9F05_RS07985;old_locus_tag=C9F05_08175
NZ_PYKE01000108.1	Protein Homology	CDS	548	1423	.	+	0	ID=cds-WP_135370168.1;Parent=gene-C9F05_RS07985;Dbxref=GenBank:WP_135370168.1;Name=WP_135370168.1;gbkey=CDS;gene=pipB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460061.1;locus_tag=C9F05_RS07985;product=SPI-2 type III secretion system effector PipB;protein_id=WP_135370168.1;transl_table=11
NZ_PYKE01000108.1	RefSeq	gene	1644	2324	.	+	.	ID=gene-C9F05_RS07990;Name=pipA;gbkey=Gene;gene=pipA;gene_biotype=protein_coding;locus_tag=C9F05_RS07990;old_locus_tag=C9F05_08180
NZ_PYKE01000108.1	Protein Homology	CDS	1644	2324	.	+	0	ID=cds-WP_031605209.1;Parent=gene-C9F05_RS07990;Dbxref=GenBank:WP_031605209.1;Name=WP_031605209.1;gbkey=CDS;gene=pipA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460060.1;locus_tag=C9F05_RS07990;product=type III secretion system effector protease PipA;protein_id=WP_031605209.1;transl_table=11
NZ_PYKE01000108.1	RefSeq	gene	2461	2548	.	-	.	ID=gene-C9F05_RS07995;Name=C9F05_RS07995;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS07995;old_locus_tag=C9F05_08185
NZ_PYKE01000108.1	tRNAscan-SE	tRNA	2461	2548	.	-	.	ID=rna-C9F05_RS07995;Parent=gene-C9F05_RS07995;anticodon=(pos:complement(2512..2514));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS07995;product=tRNA-Ser
NZ_PYKE01000108.1	tRNAscan-SE	exon	2461	2548	.	-	.	ID=exon-C9F05_RS07995-1;Parent=rna-C9F05_RS07995;anticodon=(pos:complement(2512..2514));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS07995;product=tRNA-Ser
NZ_PYKE01000108.1	RefSeq	gene	2942	3601	.	+	.	ID=gene-C9F05_RS08000;Name=yccA;gbkey=Gene;gene=yccA;gene_biotype=protein_coding;locus_tag=C9F05_RS08000;old_locus_tag=C9F05_08190
NZ_PYKE01000108.1	Protein Homology	CDS	2942	3601	.	+	0	ID=cds-WP_000374046.1;Parent=gene-C9F05_RS08000;Dbxref=GenBank:WP_000374046.1;Name=WP_000374046.1;gbkey=CDS;gene=yccA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000375124.1;locus_tag=C9F05_RS08000;product=FtsH protease modulator YccA;protein_id=WP_000374046.1;transl_table=11
NZ_PYKE01000108.1	RefSeq	gene	3688	4017	.	+	.	ID=gene-C9F05_RS08005;Name=tusE;gbkey=Gene;gene=tusE;gene_biotype=protein_coding;locus_tag=C9F05_RS08005;old_locus_tag=C9F05_08195
NZ_PYKE01000108.1	Protein Homology	CDS	3688	4017	.	+	0	ID=cds-WP_000904449.1;Parent=gene-C9F05_RS08005;Dbxref=GenBank:WP_000904449.1;Name=WP_000904449.1;gbkey=CDS;gene=tusE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460058.1;locus_tag=C9F05_RS08005;product=sulfurtransferase TusE;protein_id=WP_000904449.1;transl_table=11
NZ_PYKE01000108.1	RefSeq	gene	4014	4295	.	-	.	ID=gene-C9F05_RS08010;Name=yccX;gbkey=Gene;gene=yccX;gene_biotype=protein_coding;locus_tag=C9F05_RS08010;old_locus_tag=C9F05_08200
NZ_PYKE01000108.1	Protein Homology	CDS	4014	4295	.	-	0	ID=cds-WP_000072884.1;Parent=gene-C9F05_RS08010;Dbxref=GenBank:WP_000072884.1;Name=WP_000072884.1;Ontology_term=GO:0003998;gbkey=CDS;gene=yccX;go_function=acylphosphatase activity|0003998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460057.1;locus_tag=C9F05_RS08010;product=acylphosphatase;protein_id=WP_000072884.1;transl_table=11
NZ_PYKE01000108.1	RefSeq	gene	4344	5123	.	-	.	ID=gene-C9F05_RS08015;Name=C9F05_RS08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08015;old_locus_tag=C9F05_08205
NZ_PYKE01000108.1	Protein Homology	CDS	4344	5123	.	-	0	ID=cds-WP_000548082.1;Parent=gene-C9F05_RS08015;Dbxref=GenBank:WP_000548082.1;Name=WP_000548082.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460056.1;locus_tag=C9F05_RS08015;product=helix-turn-helix transcriptional regulator;protein_id=WP_000548082.1;transl_table=11
NZ_PYKE01000108.1	RefSeq	gene	5149	5697	.	-	.	ID=gene-C9F05_RS08020;Name=C9F05_RS08020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08020;old_locus_tag=C9F05_08210
NZ_PYKE01000108.1	Protein Homology	CDS	5149	5697	.	-	0	ID=cds-WP_000859416.1;Parent=gene-C9F05_RS08020;Dbxref=GenBank:WP_000859416.1;Name=WP_000859416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460055.1;locus_tag=C9F05_RS08020;product=YbhB/YbcL family Raf kinase inhibitor-like protein;protein_id=WP_000859416.1;transl_table=11
##sequence-region NZ_PYKE01000161.1 1 5692
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000161.1	RefSeq	region	1	5692	.	+	.	ID=NZ_PYKE01000161.1:1..5692;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000161.1	RefSeq	gene	1	415	.	+	.	ID=gene-C9F05_RS11430;Name=C9F05_RS11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11430;old_locus_tag=C9F05_11745;partial=true;start_range=.,1
NZ_PYKE01000161.1	Protein Homology	CDS	1	415	.	+	1	ID=cds-WP_167854905.1;Parent=gene-C9F05_RS11430;Dbxref=GenBank:WP_167854905.1;Name=WP_167854905.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459540.1;locus_tag=C9F05_RS11430;partial=true;product=fimbria/pilus periplasmic chaperone;protein_id=WP_167854905.1;start_range=.,1;transl_table=11
NZ_PYKE01000161.1	RefSeq	gene	446	3058	.	+	.	ID=gene-C9F05_RS11435;Name=C9F05_RS11435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11435;old_locus_tag=C9F05_11750
NZ_PYKE01000161.1	Protein Homology	CDS	446	3058	.	+	0	ID=cds-WP_135370287.1;Parent=gene-C9F05_RS11435;Dbxref=GenBank:WP_135370287.1;Name=WP_135370287.1;Ontology_term=GO:0009297,GO:0005515,GO:0015473,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA,fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459541.1;locus_tag=C9F05_RS11435;product=fimbrial biogenesis usher protein;protein_id=WP_135370287.1;transl_table=11
NZ_PYKE01000161.1	RefSeq	gene	3073	4080	.	+	.	ID=gene-C9F05_RS11440;Name=fimH;gbkey=Gene;gene=fimH;gene_biotype=protein_coding;locus_tag=C9F05_RS11440;old_locus_tag=C9F05_11755
NZ_PYKE01000161.1	Protein Homology	CDS	3073	4080	.	+	0	ID=cds-WP_000708662.1;Parent=gene-C9F05_RS11440;Dbxref=GenBank:WP_000708662.1;Name=WP_000708662.1;Ontology_term=GO:0007155;gbkey=CDS;gene=fimH;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459542.1;locus_tag=C9F05_RS11440;product=type 1 fimbria D-mannose specific adhesin FimH;protein_id=WP_000708662.1;transl_table=11
NZ_PYKE01000161.1	RefSeq	gene	4090	4608	.	+	.	ID=gene-C9F05_RS11445;Name=sfmF;gbkey=Gene;gene=sfmF;gene_biotype=protein_coding;locus_tag=C9F05_RS11445;old_locus_tag=C9F05_11760
NZ_PYKE01000161.1	Protein Homology	CDS	4090	4608	.	+	0	ID=cds-WP_000577507.1;Parent=gene-C9F05_RS11445;Dbxref=GenBank:WP_000577507.1;Name=WP_000577507.1;gbkey=CDS;gene=sfmF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459543.1;locus_tag=C9F05_RS11445;product=fimbria assembly protein;protein_id=WP_000577507.1;transl_table=11
NZ_PYKE01000161.1	RefSeq	gene	4654	5286	.	-	.	ID=gene-C9F05_RS11450;Name=fimZ;gbkey=Gene;gene=fimZ;gene_biotype=protein_coding;locus_tag=C9F05_RS11450;old_locus_tag=C9F05_11765
NZ_PYKE01000161.1	Protein Homology	CDS	4654	5286	.	-	0	ID=cds-WP_135370288.1;Parent=gene-C9F05_RS11450;Dbxref=GenBank:WP_135370288.1;Name=WP_135370288.1;gbkey=CDS;gene=fimZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459544.1;locus_tag=C9F05_RS11450;product=fimbria biosynthesis transcriptional regulator FimZ;protein_id=WP_135370288.1;transl_table=11
##sequence-region NZ_PYKE01000048.1 1 5685
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000048.1	RefSeq	region	1	5685	.	+	.	ID=NZ_PYKE01000048.1:1..5685;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000048.1	RefSeq	gene	185	502	.	-	.	ID=gene-C9F05_RS03100;Name=metJ;gbkey=Gene;gene=metJ;gene_biotype=protein_coding;locus_tag=C9F05_RS03100;old_locus_tag=C9F05_03150
NZ_PYKE01000048.1	Protein Homology	CDS	185	502	.	-	0	ID=cds-WP_000852811.1;Parent=gene-C9F05_RS03100;Dbxref=GenBank:WP_000852811.1;Name=WP_000852811.1;gbkey=CDS;gene=metJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015855437.1;locus_tag=C9F05_RS03100;product=met regulon transcriptional regulator MetJ;protein_id=WP_000852811.1;transl_table=11
NZ_PYKE01000048.1	RefSeq	gene	767	1927	.	+	.	ID=gene-C9F05_RS03105;Name=metB;gbkey=Gene;gene=metB;gene_biotype=protein_coding;locus_tag=C9F05_RS03105;old_locus_tag=C9F05_03155
NZ_PYKE01000048.1	Protein Homology	CDS	767	1927	.	+	0	ID=cds-WP_000197216.1;Parent=gene-C9F05_RS03105;Dbxref=GenBank:WP_000197216.1;Name=WP_000197216.1;Ontology_term=GO:0019346,GO:0003824,GO:0030170;gbkey=CDS;gene=metB;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462981.1;locus_tag=C9F05_RS03105;product=cystathionine gamma-synthase;protein_id=WP_000197216.1;transl_table=11
NZ_PYKE01000048.1	RefSeq	gene	1930	4362	.	+	.	ID=gene-C9F05_RS03110;Name=C9F05_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03110;old_locus_tag=C9F05_03160
NZ_PYKE01000048.1	Protein Homology	CDS	1930	4362	.	+	0	ID=cds-WP_000110805.1;Parent=gene-C9F05_RS03110;Dbxref=GenBank:WP_000110805.1;Name=WP_000110805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000110794.1;locus_tag=C9F05_RS03110;product=bifunctional aspartate kinase/homoserine dehydrogenase II;protein_id=WP_000110805.1;transl_table=11
NZ_PYKE01000048.1	RefSeq	gene	4478	5335	.	-	.	ID=gene-C9F05_RS03115;Name=mscS;gbkey=Gene;gene=mscS;gene_biotype=protein_coding;locus_tag=C9F05_RS03115;old_locus_tag=C9F05_03165
NZ_PYKE01000048.1	Protein Homology	CDS	4478	5335	.	-	0	ID=cds-WP_000398251.1;Parent=gene-C9F05_RS03115;Dbxref=GenBank:WP_000398251.1;Name=WP_000398251.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462983.1;locus_tag=C9F05_RS03115;product=small-conductance mechanosensitive channel MscS;protein_id=WP_000398251.1;transl_table=11
NZ_PYKE01000048.1	RefSeq	pseudogene	5338	5685	.	-	.	ID=gene-C9F05_RS03120;Name=C9F05_RS03120;end_range=5685,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS03120;partial=true;pseudo=true
NZ_PYKE01000048.1	Protein Homology	CDS	5338	5685	.	-	0	ID=cds-C9F05_RS03120;Parent=gene-C9F05_RS03120;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=5685,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000406820.1;locus_tag=C9F05_RS03120;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000181.1 1 5622
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000181.1	RefSeq	region	1	5622	.	+	.	ID=NZ_PYKE01000181.1:1..5622;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000181.1	RefSeq	gene	179	2368	.	+	.	ID=gene-C9F05_RS12220;Name=C9F05_RS12220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12220;old_locus_tag=C9F05_12565
NZ_PYKE01000181.1	Protein Homology	CDS	179	2368	.	+	0	ID=cds-WP_079958644.1;Parent=gene-C9F05_RS12220;Dbxref=GenBank:WP_079958644.1;Name=WP_079958644.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459287.1;locus_tag=C9F05_RS12220;product=type VI secretion system Vgr family protein;protein_id=WP_079958644.1;transl_table=11
NZ_PYKE01000181.1	RefSeq	gene	2392	2838	.	+	.	ID=gene-C9F05_RS12225;Name=C9F05_RS12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12225;old_locus_tag=C9F05_12570
NZ_PYKE01000181.1	Protein Homology	CDS	2392	2838	.	+	0	ID=cds-WP_000375832.1;Parent=gene-C9F05_RS12225;Dbxref=GenBank:WP_000375832.1;Name=WP_000375832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459288.1;locus_tag=C9F05_RS12225;product=DcrB-related protein;protein_id=WP_000375832.1;transl_table=11
NZ_PYKE01000181.1	RefSeq	gene	2857	5622	.	+	.	ID=gene-C9F05_RS12230;Name=C9F05_RS12230;end_range=5622,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12230;old_locus_tag=C9F05_12575;partial=true
NZ_PYKE01000181.1	Protein Homology	CDS	2857	5622	.	+	0	ID=cds-WP_135370320.1;Parent=gene-C9F05_RS12230;Dbxref=GenBank:WP_135370320.1;Name=WP_135370320.1;end_range=5622,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459289.1;locus_tag=C9F05_RS12230;partial=true;product=DUF6531 domain-containing protein;protein_id=WP_135370320.1;transl_table=11
##sequence-region NZ_PYKE01000102.1 1 32422
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000102.1	RefSeq	region	1	32422	.	+	.	ID=NZ_PYKE01000102.1:1..32422;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000102.1	RefSeq	gene	324	935	.	+	.	ID=gene-C9F05_RS07450;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=C9F05_RS07450;old_locus_tag=C9F05_07605
NZ_PYKE01000102.1	Protein Homology	CDS	324	935	.	+	0	ID=cds-WP_000580335.1;Parent=gene-C9F05_RS07450;Dbxref=GenBank:WP_000580335.1;Name=WP_000580335.1;Ontology_term=GO:0006281,GO:0006310,GO:0003678,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=DNA helicase activity|0003678||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012131997.1;locus_tag=C9F05_RS07450;product=Holliday junction branch migration protein RuvA;protein_id=WP_000580335.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	944	1954	.	+	.	ID=gene-C9F05_RS07455;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=C9F05_RS07455;old_locus_tag=C9F05_07610
NZ_PYKE01000102.1	Protein Homology	CDS	944	1954	.	+	0	ID=cds-WP_000568508.1;Parent=gene-C9F05_RS07455;Dbxref=GenBank:WP_000568508.1;Name=WP_000568508.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460851.1;locus_tag=C9F05_RS07455;product=Holliday junction branch migration DNA helicase RuvB;protein_id=WP_000568508.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	2033	2818	.	-	.	ID=gene-C9F05_RS07460;Name=znuB;gbkey=Gene;gene=znuB;gene_biotype=protein_coding;locus_tag=C9F05_RS07460;old_locus_tag=C9F05_07615
NZ_PYKE01000102.1	Protein Homology	CDS	2033	2818	.	-	0	ID=cds-WP_000571508.1;Parent=gene-C9F05_RS07460;Dbxref=GenBank:WP_000571508.1;Name=WP_000571508.1;Ontology_term=GO:0055085,GO:0042626;gbkey=CDS;gene=znuB;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460850.1;locus_tag=C9F05_RS07460;product=zinc ABC transporter permease subunit ZnuB;protein_id=WP_000571508.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	2815	3570	.	-	.	ID=gene-C9F05_RS07465;Name=znuC;gbkey=Gene;gene=znuC;gene_biotype=protein_coding;locus_tag=C9F05_RS07465;old_locus_tag=C9F05_07620
NZ_PYKE01000102.1	Protein Homology	CDS	2815	3570	.	-	0	ID=cds-WP_000203023.1;Parent=gene-C9F05_RS07465;Dbxref=GenBank:WP_000203023.1;Name=WP_000203023.1;Ontology_term=GO:0006829,GO:0005524,GO:0015633;gbkey=CDS;gene=znuC;go_function=ATP binding|0005524||IEA,ABC-type zinc transporter activity|0015633||IEA;go_process=zinc ion transport|0006829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310595.1;locus_tag=C9F05_RS07465;product=zinc ABC transporter ATP-binding protein ZnuC;protein_id=WP_000203023.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	3649	4593	.	+	.	ID=gene-C9F05_RS07470;Name=znuA;gbkey=Gene;gene=znuA;gene_biotype=protein_coding;locus_tag=C9F05_RS07470;old_locus_tag=C9F05_07625
NZ_PYKE01000102.1	Protein Homology	CDS	3649	4593	.	+	0	ID=cds-WP_000939597.1;Parent=gene-C9F05_RS07470;Dbxref=GenBank:WP_000939597.1;Name=WP_000939597.1;Ontology_term=GO:0006829,GO:0046872;gbkey=CDS;gene=znuA;go_function=metal ion binding|0046872||IEA;go_process=zinc ion transport|0006829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416371.4;locus_tag=C9F05_RS07470;product=zinc ABC transporter substrate-binding protein ZnuA;protein_id=WP_000939597.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	4609	5928	.	+	.	ID=gene-C9F05_RS07475;Name=mepM;gbkey=Gene;gene=mepM;gene_biotype=protein_coding;locus_tag=C9F05_RS07475;old_locus_tag=C9F05_07630
NZ_PYKE01000102.1	Protein Homology	CDS	4609	5928	.	+	0	ID=cds-WP_001184028.1;Parent=gene-C9F05_RS07475;Dbxref=GenBank:WP_001184028.1;Name=WP_001184028.1;Ontology_term=GO:0042834;gbkey=CDS;gene=mepM;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460847.1;locus_tag=C9F05_RS07475;product=murein DD-endopeptidase MepM;protein_id=WP_001184028.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	6045	7016	.	+	.	ID=gene-C9F05_RS07480;Name=lpxM;gbkey=Gene;gene=lpxM;gene_biotype=protein_coding;gene_synonym=msbB;locus_tag=C9F05_RS07480;old_locus_tag=C9F05_07640
NZ_PYKE01000102.1	Protein Homology	CDS	6045	7016	.	+	0	ID=cds-WP_000448401.1;Parent=gene-C9F05_RS07480;Dbxref=GenBank:WP_000448401.1;Name=WP_000448401.1;Note=LpxM is lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase%2C an enzyme characterized in Escherichia coli and involved in biosynthesis of the form of lipid A found in that species and some closely related species.;Ontology_term=GO:0009103,GO:0016747,GO:0009276,GO:0016020;gbkey=CDS;gene=lpxM;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,membrane|0016020||IEA;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460846.1;locus_tag=C9F05_RS07480;product=lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase;protein_id=WP_000448401.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	7089	8531	.	-	.	ID=gene-C9F05_RS07485;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=C9F05_RS07485;old_locus_tag=C9F05_07645
NZ_PYKE01000102.1	Protein Homology	CDS	7089	8531	.	-	0	ID=cds-WP_000091156.1;Parent=gene-C9F05_RS07485;Dbxref=GenBank:WP_000091156.1;Name=WP_000091156.1;Ontology_term=GO:0006096,GO:0000287,GO:0004743,GO:0030955;gbkey=CDS;gene=pyk;go_function=magnesium ion binding|0000287||IEA,pyruvate kinase activity|0004743||IEA,potassium ion binding|0030955||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120709.1;locus_tag=C9F05_RS07485;product=pyruvate kinase;protein_id=WP_000091156.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	8655	9524	.	-	.	ID=gene-C9F05_RS07490;Name=C9F05_RS07490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07490;old_locus_tag=C9F05_07650
NZ_PYKE01000102.1	Protein Homology	CDS	8655	9524	.	-	0	ID=cds-WP_001056719.1;Parent=gene-C9F05_RS07490;Dbxref=GenBank:WP_001056719.1;Name=WP_001056719.1;Ontology_term=GO:0006351,GO:0006355,GO:0003677,GO:0003700,GO:0097367;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,carbohydrate derivative binding|0097367||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460844.1;locus_tag=C9F05_RS07490;product=MurR/RpiR family transcriptional regulator;protein_id=WP_001056719.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	9866	11341	.	+	.	ID=gene-C9F05_RS07500;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=C9F05_RS07500;old_locus_tag=C9F05_07660
NZ_PYKE01000102.1	Protein Homology	CDS	9866	11341	.	+	0	ID=cds-WP_000301711.1;Parent=gene-C9F05_RS07500;Dbxref=GenBank:WP_000301711.1;Name=WP_000301711.1;Ontology_term=GO:0006006,GO:0006098,GO:0004345,GO:0016614,GO:0050661;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA,oxidoreductase activity%2C acting on CH-OH group of donors|0016614||IEA,NADP binding|0050661||IEA;go_process=glucose metabolic process|0006006||IEA,pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120712.1;locus_tag=C9F05_RS07500;product=glucose-6-phosphate dehydrogenase;protein_id=WP_000301711.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	11576	13387	.	+	.	ID=gene-C9F05_RS07505;Name=edd;gbkey=Gene;gene=edd;gene_biotype=protein_coding;locus_tag=C9F05_RS07505;old_locus_tag=C9F05_07665
NZ_PYKE01000102.1	Protein Homology	CDS	11576	13387	.	+	0	ID=cds-WP_135370158.1;Parent=gene-C9F05_RS07505;Dbxref=GenBank:WP_135370158.1;Name=WP_135370158.1;Ontology_term=GO:0009255,GO:0004456;gbkey=CDS;gene=edd;go_function=phosphogluconate dehydratase activity|0004456||IEA;go_process=Entner-Doudoroff pathway through 6-phosphogluconate|0009255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460842.1;locus_tag=C9F05_RS07505;product=phosphogluconate dehydratase;protein_id=WP_135370158.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	13425	14066	.	+	.	ID=gene-C9F05_RS07510;Name=kdgA;gbkey=Gene;gene=kdgA;gene_biotype=protein_coding;gene_synonym=eda;locus_tag=C9F05_RS07510;old_locus_tag=C9F05_07670
NZ_PYKE01000102.1	Protein Homology	CDS	13425	14066	.	+	0	ID=cds-WP_000800497.1;Parent=gene-C9F05_RS07510;Dbxref=GenBank:WP_000800497.1;Name=WP_000800497.1;gbkey=CDS;gene=kdgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460841.1;locus_tag=C9F05_RS07510;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_000800497.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	14166	15344	.	-	.	ID=gene-C9F05_RS07515;Name=purT;gbkey=Gene;gene=purT;gene_biotype=protein_coding;locus_tag=C9F05_RS07515;old_locus_tag=C9F05_07675
NZ_PYKE01000102.1	Protein Homology	CDS	14166	15344	.	-	0	ID=cds-WP_000173429.1;Parent=gene-C9F05_RS07515;Dbxref=GenBank:WP_000173429.1;Name=WP_000173429.1;Ontology_term=GO:0009152,GO:0000287,GO:0004644,GO:0005524;gbkey=CDS;gene=purT;go_function=magnesium ion binding|0000287||IEA,phosphoribosylglycinamide formyltransferase activity|0004644||IEA,ATP binding|0005524||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460840.1;locus_tag=C9F05_RS07515;product=formate-dependent phosphoribosylglycinamide formyltransferase;protein_id=WP_000173429.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	15475	15765	.	+	.	ID=gene-C9F05_RS07520;Name=yebG;gbkey=Gene;gene=yebG;gene_biotype=protein_coding;locus_tag=C9F05_RS07520;old_locus_tag=C9F05_07680
NZ_PYKE01000102.1	Protein Homology	CDS	15475	15765	.	+	0	ID=cds-WP_000257723.1;Parent=gene-C9F05_RS07520;Dbxref=GenBank:WP_000257723.1;Name=WP_000257723.1;gbkey=CDS;gene=yebG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460839.1;locus_tag=C9F05_RS07520;product=DNA damage-inducible protein YebG;protein_id=WP_000257723.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	15833	16186	.	+	.	ID=gene-C9F05_RS07525;Name=yebF;gbkey=Gene;gene=yebF;gene_biotype=protein_coding;locus_tag=C9F05_RS07525;old_locus_tag=C9F05_07685
NZ_PYKE01000102.1	Protein Homology	CDS	15833	16186	.	+	0	ID=cds-WP_001042123.1;Parent=gene-C9F05_RS07525;Dbxref=GenBank:WP_001042123.1;Name=WP_001042123.1;gbkey=CDS;gene=yebF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460838.1;locus_tag=C9F05_RS07525;product=protein YebF;protein_id=WP_001042123.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	16280	16939	.	+	.	ID=gene-C9F05_RS07530;Name=C9F05_RS07530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07530;old_locus_tag=C9F05_07690
NZ_PYKE01000102.1	Protein Homology	CDS	16280	16939	.	+	0	ID=cds-WP_000024706.1;Parent=gene-C9F05_RS07530;Dbxref=GenBank:WP_000024706.1;Name=WP_000024706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460837.1;locus_tag=C9F05_RS07530;product=tellurite resistance TerB family protein;protein_id=WP_000024706.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	17152	19203	.	+	.	ID=gene-C9F05_RS07535;Name=ptrB;gbkey=Gene;gene=ptrB;gene_biotype=protein_coding;locus_tag=C9F05_RS07535;old_locus_tag=C9F05_07695
NZ_PYKE01000102.1	Protein Homology	CDS	17152	19203	.	+	0	ID=cds-WP_000936999.1;Parent=gene-C9F05_RS07535;Dbxref=GenBank:WP_000936999.1;Name=WP_000936999.1;gbkey=CDS;gene=ptrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460836.1;locus_tag=C9F05_RS07535;product=oligopeptidase B;protein_id=WP_000936999.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	19240	19938	.	-	.	ID=gene-C9F05_RS07540;Name=exoX;gbkey=Gene;gene=exoX;gene_biotype=protein_coding;locus_tag=C9F05_RS07540;old_locus_tag=C9F05_07700
NZ_PYKE01000102.1	Protein Homology	CDS	19240	19938	.	-	0	ID=cds-WP_079973233.1;Parent=gene-C9F05_RS07540;Dbxref=GenBank:WP_079973233.1;Name=WP_079973233.1;gbkey=CDS;gene=exoX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460835.1;locus_tag=C9F05_RS07540;product=exodeoxyribonuclease X;protein_id=WP_079973233.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	19962	20618	.	-	.	ID=gene-C9F05_RS07545;Name=C9F05_RS07545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07545;old_locus_tag=C9F05_07705
NZ_PYKE01000102.1	Protein Homology	CDS	19962	20618	.	-	0	ID=cds-WP_000100249.1;Parent=gene-C9F05_RS07545;Dbxref=GenBank:WP_000100249.1;Name=WP_000100249.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460834.1;locus_tag=C9F05_RS07545;product=carbon-nitrogen hydrolase family protein;protein_id=WP_000100249.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	20726	20956	.	-	.	ID=gene-C9F05_RS07550;Name=C9F05_RS07550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07550;old_locus_tag=C9F05_07710
NZ_PYKE01000102.1	Protein Homology	CDS	20726	20956	.	-	0	ID=cds-WP_000856224.1;Parent=gene-C9F05_RS07550;Dbxref=GenBank:WP_000856224.1;Name=WP_000856224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460833.1;locus_tag=C9F05_RS07550;product=DNA polymerase III subunit theta;protein_id=WP_000856224.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	21094	21468	.	+	.	ID=gene-C9F05_RS07555;Name=yobA;gbkey=Gene;gene=yobA;gene_biotype=protein_coding;locus_tag=C9F05_RS07555;old_locus_tag=C9F05_07715
NZ_PYKE01000102.1	Protein Homology	CDS	21094	21468	.	+	0	ID=cds-WP_000168395.1;Parent=gene-C9F05_RS07555;Dbxref=GenBank:WP_000168395.1;Name=WP_000168395.1;Ontology_term=GO:0006825,GO:0046688,GO:0005507;gbkey=CDS;gene=yobA;go_function=copper ion binding|0005507||IEA;go_process=copper ion transport|0006825||IEA,response to copper ion|0046688||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460832.1;locus_tag=C9F05_RS07555;product=CopC domain-containing protein YobA;protein_id=WP_000168395.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	21469	22344	.	+	.	ID=gene-C9F05_RS07560;Name=copD;gbkey=Gene;gene=copD;gene_biotype=protein_coding;locus_tag=C9F05_RS07560;old_locus_tag=C9F05_07720
NZ_PYKE01000102.1	Protein Homology	CDS	21469	22344	.	+	0	ID=cds-WP_077908185.1;Parent=gene-C9F05_RS07560;Dbxref=GenBank:WP_077908185.1;Name=WP_077908185.1;Ontology_term=GO:0006825,GO:0016020;gbkey=CDS;gene=copD;go_component=membrane|0016020||IEA;go_process=copper ion transport|0006825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460831.1;locus_tag=C9F05_RS07560;product=copper homeostasis membrane protein CopD;protein_id=WP_077908185.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	22361	22714	.	+	.	ID=gene-C9F05_RS07565;Name=C9F05_RS07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07565;old_locus_tag=C9F05_07725
NZ_PYKE01000102.1	Protein Homology	CDS	22361	22714	.	+	0	ID=cds-WP_000722368.1;Parent=gene-C9F05_RS07565;Dbxref=GenBank:WP_000722368.1;Name=WP_000722368.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460830.1;locus_tag=C9F05_RS07565;product=YebY family protein;protein_id=WP_000722368.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	23097	24176	.	-	.	ID=gene-C9F05_RS07575;Name=C9F05_RS07575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07575;old_locus_tag=C9F05_07740
NZ_PYKE01000102.1	Protein Homology	CDS	23097	24176	.	-	0	ID=cds-WP_080160492.1;Parent=gene-C9F05_RS07575;Dbxref=GenBank:WP_080160492.1;Name=WP_080160492.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001189081.1;locus_tag=C9F05_RS07575;product=tyrosine-type recombinase/integrase;protein_id=WP_080160492.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	24157	24429	.	-	.	ID=gene-C9F05_RS07580;Name=C9F05_RS07580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07580;old_locus_tag=C9F05_07745
NZ_PYKE01000102.1	Protein Homology	CDS	24157	24429	.	-	0	ID=cds-WP_038390080.1;Parent=gene-C9F05_RS07580;Dbxref=GenBank:WP_038390080.1;Name=WP_038390080.1;Ontology_term=GO:0006310,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001575998.1;locus_tag=C9F05_RS07580;product=excisionase;protein_id=WP_038390080.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	24502	24918	.	-	.	ID=gene-C9F05_RS23660;Name=C9F05_RS23660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23660
NZ_PYKE01000102.1	Protein Homology	CDS	24502	24918	.	-	0	ID=cds-WP_022630509.1;Parent=gene-C9F05_RS23660;Dbxref=GenBank:WP_022630509.1;Name=WP_022630509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000743303.1;locus_tag=C9F05_RS23660;product=hypothetical protein;protein_id=WP_022630509.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	24915	26996	.	-	.	ID=gene-C9F05_RS07590;Name=C9F05_RS07590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07590;old_locus_tag=C9F05_07755
NZ_PYKE01000102.1	Protein Homology	CDS	24915	26996	.	-	0	ID=cds-WP_023892804.1;Parent=gene-C9F05_RS07590;Dbxref=GenBank:WP_023892804.1;Name=WP_023892804.1;Ontology_term=GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524362.1;locus_tag=C9F05_RS07590;product=DNA cytosine methyltransferase;protein_id=WP_023892804.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	26993	27250	.	-	.	ID=gene-C9F05_RS07595;Name=C9F05_RS07595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07595;old_locus_tag=C9F05_07760
NZ_PYKE01000102.1	Protein Homology	CDS	26993	27250	.	-	0	ID=cds-WP_023892805.1;Parent=gene-C9F05_RS07595;Dbxref=GenBank:WP_023892805.1;Name=WP_023892805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524382.1;locus_tag=C9F05_RS07595;product=hypothetical protein;protein_id=WP_023892805.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	27344	27523	.	-	.	ID=gene-C9F05_RS07600;Name=C9F05_RS07600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07600;old_locus_tag=C9F05_07765
NZ_PYKE01000102.1	Protein Homology	CDS	27344	27523	.	-	0	ID=cds-WP_000276802.1;Parent=gene-C9F05_RS07600;Dbxref=GenBank:WP_000276802.1;Name=WP_000276802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000276802.1;locus_tag=C9F05_RS07600;product=DUF1187 family protein;protein_id=WP_000276802.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	27511	28137	.	-	.	ID=gene-C9F05_RS23760;Name=C9F05_RS23760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23760
NZ_PYKE01000102.1	Protein Homology	CDS	27511	28137	.	-	0	ID=cds-WP_223614441.1;Parent=gene-C9F05_RS23760;Dbxref=GenBank:WP_223614441.1;Name=WP_223614441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000069465.1;locus_tag=C9F05_RS23760;product=Eaa protein;protein_id=WP_223614441.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	28134	28466	.	-	.	ID=gene-C9F05_RS07610;Name=C9F05_RS07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07610;old_locus_tag=C9F05_07775
NZ_PYKE01000102.1	Protein Homology	CDS	28134	28466	.	-	0	ID=cds-WP_135370159.1;Parent=gene-C9F05_RS07610;Dbxref=GenBank:WP_135370159.1;Name=WP_135370159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000066251.1;locus_tag=C9F05_RS07610;product=hypothetical protein;protein_id=WP_135370159.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	28459	28779	.	-	.	ID=gene-C9F05_RS07615;Name=C9F05_RS07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07615;old_locus_tag=C9F05_07780
NZ_PYKE01000102.1	Protein Homology	CDS	28459	28779	.	-	0	ID=cds-WP_135370160.1;Parent=gene-C9F05_RS07615;Dbxref=GenBank:WP_135370160.1;Name=WP_135370160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001033921.1;locus_tag=C9F05_RS07615;product=hypothetical protein;protein_id=WP_135370160.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	28815	29645	.	-	.	ID=gene-C9F05_RS07620;Name=recT;gbkey=Gene;gene=recT;gene_biotype=protein_coding;locus_tag=C9F05_RS07620;old_locus_tag=C9F05_07785
NZ_PYKE01000102.1	Protein Homology	CDS	28815	29645	.	-	0	ID=cds-WP_135370161.1;Parent=gene-C9F05_RS07620;Dbxref=GenBank:WP_135370161.1;Name=WP_135370161.1;Ontology_term=GO:0006259,GO:0003677;gbkey=CDS;gene=recT;go_function=DNA binding|0003677||IEA;go_process=DNA metabolic process|0006259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001126028.1;locus_tag=C9F05_RS07620;product=recombination protein RecT;protein_id=WP_135370161.1;transl_table=11
NZ_PYKE01000102.1	RefSeq	gene	29638	32328	.	-	.	ID=gene-C9F05_RS07625;Name=recE;gbkey=Gene;gene=recE;gene_biotype=protein_coding;locus_tag=C9F05_RS07625;old_locus_tag=C9F05_07790
NZ_PYKE01000102.1	Protein Homology	CDS	29638	32328	.	-	0	ID=cds-WP_135370162.1;Parent=gene-C9F05_RS07625;Dbxref=GenBank:WP_135370162.1;Name=WP_135370162.1;Ontology_term=GO:0090304,GO:0051908;gbkey=CDS;gene=recE;go_function=double-stranded DNA 5'-3' DNA exonuclease activity|0051908||IEA;go_process=nucleic acid metabolic process|0090304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000023732.1;locus_tag=C9F05_RS07625;product=exodeoxyribonuclease VIII;protein_id=WP_135370162.1;transl_table=11
##sequence-region NZ_PYKE01000027.1 1 84019
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000027.1	RefSeq	region	1	84019	.	+	.	ID=NZ_PYKE01000027.1:1..84019;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000027.1	RefSeq	gene	8	1255	.	-	.	ID=gene-C9F05_RS01040;Name=C9F05_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01040;old_locus_tag=C9F05_01050
NZ_PYKE01000027.1	Protein Homology	CDS	8	1255	.	-	0	ID=cds-WP_000005070.1;Parent=gene-C9F05_RS01040;Dbxref=GenBank:WP_000005070.1;Name=WP_000005070.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459515.1;locus_tag=C9F05_RS01040;product=MFS transporter;protein_id=WP_000005070.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	1321	2199	.	-	.	ID=gene-C9F05_RS01045;Name=glxR;gbkey=Gene;gene=glxR;gene_biotype=protein_coding;locus_tag=C9F05_RS01045;old_locus_tag=C9F05_01055
NZ_PYKE01000027.1	Protein Homology	CDS	1321	2199	.	-	0	ID=cds-WP_000765815.1;Parent=gene-C9F05_RS01045;Dbxref=GenBank:WP_000765815.1;Name=WP_000765815.1;Ontology_term=GO:0046487,GO:0008679,GO:0051287;gbkey=CDS;gene=glxR;go_function=2-hydroxy-3-oxopropionate reductase activity|0008679||IEA,NAD binding|0051287||IEA;go_process=glyoxylate metabolic process|0046487||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459514.1;locus_tag=C9F05_RS01045;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_000765815.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	2300	3076	.	-	.	ID=gene-C9F05_RS01050;Name=gip;gbkey=Gene;gene=gip;gene_biotype=protein_coding;locus_tag=C9F05_RS01050;old_locus_tag=C9F05_01060
NZ_PYKE01000027.1	Protein Homology	CDS	2300	3076	.	-	0	ID=cds-WP_000943591.1;Parent=gene-C9F05_RS01050;Dbxref=GenBank:WP_000943591.1;Name=WP_000943591.1;gbkey=CDS;gene=gip;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459513.1;locus_tag=C9F05_RS01050;product=hydroxypyruvate isomerase Gip;protein_id=WP_000943591.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	3089	4870	.	-	.	ID=gene-C9F05_RS01055;Name=gcl;gbkey=Gene;gene=gcl;gene_biotype=protein_coding;locus_tag=C9F05_RS01055;old_locus_tag=C9F05_01065
NZ_PYKE01000027.1	Protein Homology	CDS	3089	4870	.	-	0	ID=cds-WP_001096865.1;Parent=gene-C9F05_RS01055;Dbxref=GenBank:WP_001096865.1;Name=WP_001096865.1;Ontology_term=GO:0009436,GO:0009028;gbkey=CDS;gene=gcl;go_function=tartronate-semialdehyde synthase activity|0009028||IEA;go_process=glyoxylate catabolic process|0009436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459512.1;locus_tag=C9F05_RS01055;product=glyoxylate carboligase;protein_id=WP_001096865.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	4955	5773	.	-	.	ID=gene-C9F05_RS01060;Name=allR;gbkey=Gene;gene=allR;gene_biotype=protein_coding;locus_tag=C9F05_RS01060;old_locus_tag=C9F05_01070
NZ_PYKE01000027.1	Protein Homology	CDS	4955	5773	.	-	0	ID=cds-WP_000141265.1;Parent=gene-C9F05_RS01060;Dbxref=GenBank:WP_000141265.1;Name=WP_000141265.1;gbkey=CDS;gene=allR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459511.1;locus_tag=C9F05_RS01060;product=HTH-type transcriptional repressor AllR;protein_id=WP_000141265.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	5852	6334	.	-	.	ID=gene-C9F05_RS01065;Name=allA;gbkey=Gene;gene=allA;gene_biotype=protein_coding;locus_tag=C9F05_RS01065;old_locus_tag=C9F05_01075
NZ_PYKE01000027.1	Protein Homology	CDS	5852	6334	.	-	0	ID=cds-WP_000764659.1;Parent=gene-C9F05_RS01065;Dbxref=GenBank:WP_000764659.1;Name=WP_000764659.1;gbkey=CDS;gene=allA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459510.1;locus_tag=C9F05_RS01065;product=ureidoglycolate lyase;protein_id=WP_000764659.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	6561	7487	.	+	.	ID=gene-C9F05_RS01070;Name=allS;gbkey=Gene;gene=allS;gene_biotype=protein_coding;locus_tag=C9F05_RS01070;old_locus_tag=C9F05_01080
NZ_PYKE01000027.1	Protein Homology	CDS	6561	7487	.	+	0	ID=cds-WP_000460169.1;Parent=gene-C9F05_RS01070;Dbxref=GenBank:WP_000460169.1;Name=WP_000460169.1;gbkey=CDS;gene=allS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459509.1;locus_tag=C9F05_RS01070;product=HTH-type transcriptional activator AllS;protein_id=WP_000460169.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	7557	8651	.	+	.	ID=gene-C9F05_RS01075;Name=mnmH;gbkey=Gene;gene=mnmH;gene_biotype=protein_coding;locus_tag=C9F05_RS01075;old_locus_tag=C9F05_01085
NZ_PYKE01000027.1	Protein Homology	CDS	7557	8651	.	+	0	ID=cds-WP_061372184.1;Parent=gene-C9F05_RS01075;Dbxref=GenBank:WP_061372184.1;Name=WP_061372184.1;Ontology_term=GO:0002098,GO:0043828;gbkey=CDS;gene=mnmH;go_function=tRNA 2-selenouridine synthase activity|0043828||IEA;go_process=tRNA wobble uridine modification|0002098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459508.1;locus_tag=C9F05_RS01075;product=tRNA 2-selenouridine(34) synthase MnmH;protein_id=WP_061372184.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	8680	9339	.	-	.	ID=gene-C9F05_RS01080;Name=C9F05_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01080;old_locus_tag=C9F05_01090
NZ_PYKE01000027.1	Protein Homology	CDS	8680	9339	.	-	0	ID=cds-WP_000342247.1;Parent=gene-C9F05_RS01080;Dbxref=GenBank:WP_000342247.1;Name=WP_000342247.1;Ontology_term=GO:0048473,GO:0033232,GO:0042626;gbkey=CDS;go_function=ABC-type D-methionine transporter activity|0033232||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459507.1;locus_tag=C9F05_RS01080;product=methionine ABC transporter permease;protein_id=WP_000342247.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	9332	10348	.	-	.	ID=gene-C9F05_RS01085;Name=sfbB;gbkey=Gene;gene=sfbB;gene_biotype=protein_coding;locus_tag=C9F05_RS01085;old_locus_tag=C9F05_01095
NZ_PYKE01000027.1	Protein Homology	CDS	9332	10348	.	-	0	ID=cds-WP_000569660.1;Parent=gene-C9F05_RS01085;Dbxref=GenBank:WP_000569660.1;Name=WP_000569660.1;gbkey=CDS;gene=sfbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459506.1;locus_tag=C9F05_RS01085;product=virulence-associated ABC transporter ATP-binding protein SfbB;protein_id=WP_000569660.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	10385	11215	.	-	.	ID=gene-C9F05_RS01090;Name=C9F05_RS01090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01090;old_locus_tag=C9F05_01100
NZ_PYKE01000027.1	Protein Homology	CDS	10385	11215	.	-	0	ID=cds-WP_135369951.1;Parent=gene-C9F05_RS01090;Dbxref=GenBank:WP_135369951.1;Name=WP_135369951.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459505.1;locus_tag=C9F05_RS01090;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=WP_135369951.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	11472	12605	.	-	.	ID=gene-C9F05_RS01095;Name=C9F05_RS01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01095;old_locus_tag=C9F05_01105
NZ_PYKE01000027.1	Protein Homology	CDS	11472	12605	.	-	0	ID=cds-WP_000152862.1;Parent=gene-C9F05_RS01095;Dbxref=GenBank:WP_000152862.1;Name=WP_000152862.1;Ontology_term=GO:0015288,GO:0009279,GO:0016020;gbkey=CDS;go_component=cell outer membrane|0009279||IEA,membrane|0016020||IEA;go_function=porin activity|0015288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459504.1;locus_tag=C9F05_RS01095;product=porin;protein_id=WP_000152862.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	12792	15206	.	-	.	ID=gene-C9F05_RS01100;Name=ybbP;gbkey=Gene;gene=ybbP;gene_biotype=protein_coding;locus_tag=C9F05_RS01100;old_locus_tag=C9F05_01110
NZ_PYKE01000027.1	Protein Homology	CDS	12792	15206	.	-	0	ID=cds-WP_135369952.1;Parent=gene-C9F05_RS01100;Dbxref=GenBank:WP_135369952.1;Name=WP_135369952.1;gbkey=CDS;gene=ybbP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459503.1;locus_tag=C9F05_RS01100;product=putative ABC transporter permease subunit YbbP;protein_id=WP_135369952.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	15203	15889	.	-	.	ID=gene-C9F05_RS01105;Name=ybbA;gbkey=Gene;gene=ybbA;gene_biotype=protein_coding;locus_tag=C9F05_RS01105;old_locus_tag=C9F05_01115
NZ_PYKE01000027.1	Protein Homology	CDS	15203	15889	.	-	0	ID=cds-WP_001110598.1;Parent=gene-C9F05_RS01105;Dbxref=GenBank:WP_001110598.1;Name=WP_001110598.1;gbkey=CDS;gene=ybbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459502.1;locus_tag=C9F05_RS01105;product=putative ABC transporter ATP-binding protein YbbA;protein_id=WP_001110598.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	15860	16474	.	+	.	ID=gene-C9F05_RS01110;Name=tesA;gbkey=Gene;gene=tesA;gene_biotype=protein_coding;locus_tag=C9F05_RS01110;old_locus_tag=C9F05_01120
NZ_PYKE01000027.1	Protein Homology	CDS	15860	16474	.	+	0	ID=cds-WP_001010574.1;Parent=gene-C9F05_RS01110;Dbxref=GenBank:WP_001010574.1;Name=WP_001010574.1;Ontology_term=GO:0006629,GO:0016298;gbkey=CDS;gene=tesA;go_function=lipase activity|0016298||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459501.1;locus_tag=C9F05_RS01110;product=multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1;protein_id=WP_001010574.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	16629	17399	.	+	.	ID=gene-C9F05_RS01115;Name=C9F05_RS01115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01115;old_locus_tag=C9F05_01125
NZ_PYKE01000027.1	Protein Homology	CDS	16629	17399	.	+	0	ID=cds-WP_001172802.1;Parent=gene-C9F05_RS01115;Dbxref=GenBank:WP_001172802.1;Name=WP_001172802.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459500.1;locus_tag=C9F05_RS01115;product=SDR family oxidoreductase;protein_id=WP_001172802.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	17459	18313	.	+	.	ID=gene-C9F05_RS01120;Name=cnoX;gbkey=Gene;gene=cnoX;gene_biotype=protein_coding;locus_tag=C9F05_RS01120;old_locus_tag=C9F05_01130
NZ_PYKE01000027.1	Protein Homology	CDS	17459	18313	.	+	0	ID=cds-WP_000116060.1;Parent=gene-C9F05_RS01120;Dbxref=GenBank:WP_000116060.1;Name=WP_000116060.1;gbkey=CDS;gene=cnoX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459499.1;locus_tag=C9F05_RS01120;product=chaperedoxin;protein_id=WP_000116060.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	18399	19178	.	-	.	ID=gene-C9F05_RS01125;Name=fetB;gbkey=Gene;gene=fetB;gene_biotype=protein_coding;locus_tag=C9F05_RS01125;old_locus_tag=C9F05_01135
NZ_PYKE01000027.1	Protein Homology	CDS	18399	19178	.	-	0	ID=cds-WP_001002130.1;Parent=gene-C9F05_RS01125;Dbxref=GenBank:WP_001002130.1;Name=WP_001002130.1;Ontology_term=GO:1903988,GO:0005886;gbkey=CDS;gene=fetB;go_component=plasma membrane|0005886||IEA;go_process=iron ion export across plasma membrane|1903988||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459498.1;locus_tag=C9F05_RS01125;product=iron efflux ABC transporter permease subunit FetB;protein_id=WP_001002130.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	19165	19842	.	-	.	ID=gene-C9F05_RS01130;Name=fetA;gbkey=Gene;gene=fetA;gene_biotype=protein_coding;gene_synonym=ybbL;locus_tag=C9F05_RS01130;old_locus_tag=C9F05_01140
NZ_PYKE01000027.1	Protein Homology	CDS	19165	19842	.	-	0	ID=cds-WP_000140188.1;Parent=gene-C9F05_RS01130;Dbxref=GenBank:WP_000140188.1;Name=WP_000140188.1;Ontology_term=GO:1903988,GO:0016887;gbkey=CDS;gene=fetA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=iron ion export across plasma membrane|1903988||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459497.1;locus_tag=C9F05_RS01130;product=iron efflux ABC transporter ATP-binding subunit FetA;protein_id=WP_000140188.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	19989	20906	.	+	.	ID=gene-C9F05_RS01135;Name=C9F05_RS01135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01135;old_locus_tag=C9F05_01145
NZ_PYKE01000027.1	Protein Homology	CDS	19989	20906	.	+	0	ID=cds-WP_000906146.1;Parent=gene-C9F05_RS01135;Dbxref=GenBank:WP_000906146.1;Name=WP_000906146.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459496.1;locus_tag=C9F05_RS01135;product=SPFH domain-containing protein;protein_id=WP_000906146.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	20903	21355	.	+	.	ID=gene-C9F05_RS01140;Name=C9F05_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01140;old_locus_tag=C9F05_01150
NZ_PYKE01000027.1	Protein Homology	CDS	20903	21355	.	+	0	ID=cds-WP_000561177.1;Parent=gene-C9F05_RS01140;Dbxref=GenBank:WP_000561177.1;Name=WP_000561177.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459495.1;locus_tag=C9F05_RS01140;product=NfeD family protein;protein_id=WP_000561177.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	21356	21772	.	-	.	ID=gene-C9F05_RS01145;Name=cueR;gbkey=Gene;gene=cueR;gene_biotype=protein_coding;locus_tag=C9F05_RS01145;old_locus_tag=C9F05_01155
NZ_PYKE01000027.1	Protein Homology	CDS	21356	21772	.	-	0	ID=cds-WP_001026760.1;Parent=gene-C9F05_RS01145;Dbxref=GenBank:WP_001026760.1;Name=WP_001026760.1;gbkey=CDS;gene=cueR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459494.1;locus_tag=C9F05_RS01145;product=Cu(I)-responsive transcriptional regulator;protein_id=WP_001026760.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	21882	24383	.	+	.	ID=gene-C9F05_RS01150;Name=copA;gbkey=Gene;gene=copA;gene_biotype=protein_coding;locus_tag=C9F05_RS01150;old_locus_tag=C9F05_01160
NZ_PYKE01000027.1	Protein Homology	CDS	21882	24383	.	+	0	ID=cds-WP_000083909.1;Parent=gene-C9F05_RS01150;Dbxref=GenBank:WP_000083909.1;Name=WP_000083909.1;Ontology_term=GO:0006812,GO:0019829;gbkey=CDS;gene=copA;go_function=ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA;go_process=monoatomic cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459493.1;locus_tag=C9F05_RS01150;product=copper-exporting P-type ATPase CopA;protein_id=WP_000083909.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	24537	25364	.	+	.	ID=gene-C9F05_RS01155;Name=C9F05_RS01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01155;old_locus_tag=C9F05_01165
NZ_PYKE01000027.1	Protein Homology	CDS	24537	25364	.	+	0	ID=cds-WP_023243154.1;Parent=gene-C9F05_RS01155;Dbxref=GenBank:WP_023243154.1;Name=WP_023243154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459492.1;locus_tag=C9F05_RS01155;product=lysozyme inhibitor LprI family protein;protein_id=WP_023243154.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	25450	26244	.	+	.	ID=gene-C9F05_RS01160;Name=C9F05_RS01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01160;old_locus_tag=C9F05_01170
NZ_PYKE01000027.1	Protein Homology	CDS	25450	26244	.	+	0	ID=cds-WP_000421861.1;Parent=gene-C9F05_RS01160;Dbxref=GenBank:WP_000421861.1;Name=WP_000421861.1;Ontology_term=GO:0008233;gbkey=CDS;go_function=peptidase activity|0008233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459491.1;locus_tag=C9F05_RS01160;product=TraB/GumN family protein;protein_id=WP_000421861.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	26446	26925	.	+	.	ID=gene-C9F05_RS01165;Name=ybaK;gbkey=Gene;gene=ybaK;gene_biotype=protein_coding;locus_tag=C9F05_RS01165;old_locus_tag=C9F05_01175
NZ_PYKE01000027.1	Protein Homology	CDS	26446	26925	.	+	0	ID=cds-WP_000186618.1;Parent=gene-C9F05_RS01165;Dbxref=GenBank:WP_000186618.1;Name=WP_000186618.1;Ontology_term=GO:0002161;gbkey=CDS;gene=ybaK;go_function=aminoacyl-tRNA deacylase activity|0002161||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818871.1;locus_tag=C9F05_RS01165;product=Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK;protein_id=WP_000186618.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	27042	28694	.	-	.	ID=gene-C9F05_RS01170;Name=ushA;gbkey=Gene;gene=ushA;gene_biotype=protein_coding;locus_tag=C9F05_RS01170;old_locus_tag=C9F05_01180
NZ_PYKE01000027.1	Protein Homology	CDS	27042	28694	.	-	0	ID=cds-WP_000670399.1;Parent=gene-C9F05_RS01170;Dbxref=GenBank:WP_000670399.1;Name=WP_000670399.1;Ontology_term=GO:0009166,GO:0000166,GO:0016787,GO:0046872;gbkey=CDS;gene=ushA;go_function=nucleotide binding|0000166||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459489.1;locus_tag=C9F05_RS01170;product=bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA;protein_id=WP_000670399.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	28867	30087	.	+	.	ID=gene-C9F05_RS01175;Name=C9F05_RS01175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01175;old_locus_tag=C9F05_01185
NZ_PYKE01000027.1	Protein Homology	CDS	28867	30087	.	+	0	ID=cds-WP_001251593.1;Parent=gene-C9F05_RS01175;Dbxref=GenBank:WP_001251593.1;Name=WP_001251593.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459488.1;locus_tag=C9F05_RS01175;product=MFS transporter;protein_id=WP_001251593.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	30302	31978	.	+	.	ID=gene-C9F05_RS01180;Name=ybaL;gbkey=Gene;gene=ybaL;gene_biotype=protein_coding;locus_tag=C9F05_RS01180;old_locus_tag=C9F05_01190
NZ_PYKE01000027.1	Protein Homology	CDS	30302	31978	.	+	0	ID=cds-WP_000546202.1;Parent=gene-C9F05_RS01180;Dbxref=GenBank:WP_000546202.1;Name=WP_000546202.1;Ontology_term=GO:0006813,GO:0008324,GO:0051139,GO:0016020;gbkey=CDS;gene=ybaL;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA,metal cation:proton antiporter activity|0051139||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459487.1;locus_tag=C9F05_RS01180;product=YbaL family putative K(+) efflux transporter;protein_id=WP_000546202.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	32027	33331	.	-	.	ID=gene-C9F05_RS01185;Name=gsk;gbkey=Gene;gene=gsk;gene_biotype=protein_coding;locus_tag=C9F05_RS01185;old_locus_tag=C9F05_01195
NZ_PYKE01000027.1	Protein Homology	CDS	32027	33331	.	-	0	ID=cds-WP_000671593.1;Parent=gene-C9F05_RS01185;Dbxref=GenBank:WP_000671593.1;Name=WP_000671593.1;gbkey=CDS;gene=gsk;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459486.1;locus_tag=C9F05_RS01185;product=inosine/guanosine kinase;protein_id=WP_000671593.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	33484	34455	.	+	.	ID=gene-C9F05_RS01190;Name=aes;gbkey=Gene;gene=aes;gene_biotype=protein_coding;locus_tag=C9F05_RS01190;old_locus_tag=C9F05_01200
NZ_PYKE01000027.1	Protein Homology	CDS	33484	34455	.	+	0	ID=cds-WP_047605837.1;Parent=gene-C9F05_RS01190;Dbxref=GenBank:WP_047605837.1;Name=WP_047605837.1;Ontology_term=GO:0016787;gbkey=CDS;gene=aes;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459485.1;locus_tag=C9F05_RS01190;product=acetyl esterase;protein_id=WP_047605837.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	34452	35414	.	-	.	ID=gene-C9F05_RS01195;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=C9F05_RS01195;old_locus_tag=C9F05_01205
NZ_PYKE01000027.1	Protein Homology	CDS	34452	35414	.	-	0	ID=cds-WP_047605835.1;Parent=gene-C9F05_RS01195;Dbxref=GenBank:WP_047605835.1;Name=WP_047605835.1;Ontology_term=GO:0006779,GO:0004325;gbkey=CDS;gene=hemH;go_function=ferrochelatase activity|0004325||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459484.1;locus_tag=C9F05_RS01195;product=ferrochelatase;protein_id=WP_047605835.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	35643	36287	.	-	.	ID=gene-C9F05_RS01200;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;locus_tag=C9F05_RS01200;old_locus_tag=C9F05_01215
NZ_PYKE01000027.1	Protein Homology	CDS	35643	36287	.	-	0	ID=cds-WP_001220237.1;Parent=gene-C9F05_RS01200;Dbxref=GenBank:WP_001220237.1;Name=WP_001220237.1;Ontology_term=GO:0006139,GO:0004017,GO:0005524;gbkey=CDS;gene=adk;go_function=AMP kinase activity|0004017||IEA,ATP binding|0005524||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007706188.1;locus_tag=C9F05_RS01200;product=adenylate kinase;protein_id=WP_001220237.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	36645	38519	.	-	.	ID=gene-C9F05_RS01205;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=C9F05_RS01205;old_locus_tag=C9F05_01225
NZ_PYKE01000027.1	Protein Homology	CDS	36645	38519	.	-	0	ID=cds-WP_001523272.1;Parent=gene-C9F05_RS01205;Dbxref=GenBank:WP_001523272.1;Name=WP_001523272.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887,GO:0051082;gbkey=CDS;gene=htpG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003903109.1;locus_tag=C9F05_RS01205;product=molecular chaperone HtpG;protein_id=WP_001523272.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	38630	39235	.	-	.	ID=gene-C9F05_RS01210;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=C9F05_RS01210;old_locus_tag=C9F05_01230
NZ_PYKE01000027.1	Protein Homology	CDS	38630	39235	.	-	0	ID=cds-WP_001195023.1;Parent=gene-C9F05_RS01210;Dbxref=GenBank:WP_001195023.1;Name=WP_001195023.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0046872;gbkey=CDS;gene=recR;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459481.1;locus_tag=C9F05_RS01210;product=recombination mediator RecR;protein_id=WP_001195023.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	39235	39564	.	-	.	ID=gene-C9F05_RS01215;Name=C9F05_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01215;old_locus_tag=C9F05_01235
NZ_PYKE01000027.1	Protein Homology	CDS	39235	39564	.	-	0	ID=cds-WP_000467098.1;Parent=gene-C9F05_RS01215;Dbxref=GenBank:WP_000467098.1;Name=WP_000467098.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001364632.1;locus_tag=C9F05_RS01215;product=YbaB/EbfC family nucleoid-associated protein;protein_id=WP_000467098.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	39610	41538	.	-	.	ID=gene-C9F05_RS01220;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=C9F05_RS01220;old_locus_tag=C9F05_01240
NZ_PYKE01000027.1	Protein Homology	CDS	39610	41538	.	-	0	ID=cds-WP_079942822.1;Parent=gene-C9F05_RS01220;Dbxref=GenBank:WP_079942822.1;Name=WP_079942822.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459479.1;locus_tag=C9F05_RS01220;product=DNA polymerase III subunit gamma/tau;protein_id=WP_079942822.1;transl_table=11
NZ_PYKE01000027.1	cmsearch	sequence_feature	40213	40277	.	-	.	ID=id-C9F05_RS01220;Dbxref=RFAM:RF00382;Note=DnaX frameshifting element;gbkey=misc_feature;gene=dnaX;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS01220
NZ_PYKE01000027.1	RefSeq	gene	41652	42203	.	-	.	ID=gene-C9F05_RS01225;Name=apt;gbkey=Gene;gene=apt;gene_biotype=protein_coding;locus_tag=C9F05_RS01225;old_locus_tag=C9F05_01245
NZ_PYKE01000027.1	Protein Homology	CDS	41652	42203	.	-	0	ID=cds-WP_000127352.1;Parent=gene-C9F05_RS01225;Dbxref=GenBank:WP_000127352.1;Name=WP_000127352.1;Ontology_term=GO:0006168,GO:0003999;gbkey=CDS;gene=apt;go_function=adenine phosphoribosyltransferase activity|0003999||IEA;go_process=adenine salvage|0006168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125198.1;locus_tag=C9F05_RS01225;product=adenine phosphoribosyltransferase;protein_id=WP_000127352.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	42356	42733	.	-	.	ID=gene-C9F05_RS01230;Name=C9F05_RS01230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01230;old_locus_tag=C9F05_01255
NZ_PYKE01000027.1	Protein Homology	CDS	42356	42733	.	-	0	ID=cds-WP_001189860.1;Parent=gene-C9F05_RS01230;Dbxref=GenBank:WP_001189860.1;Name=WP_001189860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459477.1;locus_tag=C9F05_RS01230;product=DUF454 family protein;protein_id=WP_001189860.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	42802	43329	.	+	.	ID=gene-C9F05_RS01235;Name=priC;gbkey=Gene;gene=priC;gene_biotype=protein_coding;locus_tag=C9F05_RS01235;old_locus_tag=C9F05_01260
NZ_PYKE01000027.1	Protein Homology	CDS	42802	43329	.	+	0	ID=cds-WP_001575715.1;Parent=gene-C9F05_RS01235;Dbxref=GenBank:WP_001575715.1;Name=WP_001575715.1;gbkey=CDS;gene=priC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001454692.1;locus_tag=C9F05_RS01235;product=primosomal replication protein N'';protein_id=WP_001575715.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	43343	43510	.	+	.	ID=gene-C9F05_RS01240;Name=rsmS;gbkey=Gene;gene=rsmS;gene_biotype=protein_coding;locus_tag=C9F05_RS01240;old_locus_tag=C9F05_01265
NZ_PYKE01000027.1	Protein Homology	CDS	43343	43510	.	+	0	ID=cds-WP_000051161.1;Parent=gene-C9F05_RS01240;Dbxref=GenBank:WP_000051161.1;Name=WP_000051161.1;gbkey=CDS;gene=rsmS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459475.1;locus_tag=C9F05_RS01240;product=pleiotropic regulatory protein RsmS;protein_id=WP_000051161.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	43580	44515	.	+	.	ID=gene-C9F05_RS01245;Name=C9F05_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01245;old_locus_tag=C9F05_01270
NZ_PYKE01000027.1	Protein Homology	CDS	43580	44515	.	+	0	ID=cds-WP_000440526.1;Parent=gene-C9F05_RS01245;Dbxref=GenBank:WP_000440526.1;Name=WP_000440526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459474.1;locus_tag=C9F05_RS01245;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_000440526.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	44557	47919	.	-	.	ID=gene-C9F05_RS01250;Name=mscK;gbkey=Gene;gene=mscK;gene_biotype=protein_coding;locus_tag=C9F05_RS01250;old_locus_tag=C9F05_01275
NZ_PYKE01000027.1	Protein Homology	CDS	44557	47919	.	-	0	ID=cds-WP_000178249.1;Parent=gene-C9F05_RS01250;Dbxref=GenBank:WP_000178249.1;Name=WP_000178249.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscK;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459473.1;locus_tag=C9F05_RS01250;product=mechanosensitive channel MscK;protein_id=WP_000178249.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	48038	48691	.	-	.	ID=gene-C9F05_RS01255;Name=acrR;gbkey=Gene;gene=acrR;gene_biotype=protein_coding;locus_tag=C9F05_RS01255;old_locus_tag=C9F05_01280
NZ_PYKE01000027.1	Protein Homology	CDS	48038	48691	.	-	0	ID=cds-WP_000101755.1;Parent=gene-C9F05_RS01255;Dbxref=GenBank:WP_000101755.1;Name=WP_000101755.1;gbkey=CDS;gene=acrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459472.1;locus_tag=C9F05_RS01255;product=multidrug efflux transporter transcriptional repressor AcrR;protein_id=WP_000101755.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	48833	50026	.	+	.	ID=gene-C9F05_RS01260;Name=acrA;gbkey=Gene;gene=acrA;gene_biotype=protein_coding;locus_tag=C9F05_RS01260;old_locus_tag=C9F05_01285
NZ_PYKE01000027.1	Protein Homology	CDS	48833	50026	.	+	0	ID=cds-WP_001039199.1;Parent=gene-C9F05_RS01260;Dbxref=GenBank:WP_001039199.1;Name=WP_001039199.1;gbkey=CDS;gene=acrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459471.1;locus_tag=C9F05_RS01260;product=multidrug efflux RND transporter periplasmic adaptor subunit AcrA;protein_id=WP_001039199.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	50049	53198	.	+	.	ID=gene-C9F05_RS01265;Name=acrB;gbkey=Gene;gene=acrB;gene_biotype=protein_coding;locus_tag=C9F05_RS01265;old_locus_tag=C9F05_01290
NZ_PYKE01000027.1	Protein Homology	CDS	50049	53198	.	+	0	ID=cds-WP_001132508.1;Parent=gene-C9F05_RS01265;Dbxref=GenBank:WP_001132508.1;Name=WP_001132508.1;gbkey=CDS;gene=acrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459470.1;locus_tag=C9F05_RS01265;product=efflux RND transporter permease AcrB;protein_id=WP_001132508.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	53694	54068	.	+	.	ID=gene-C9F05_RS01270;Name=tomB;gbkey=Gene;gene=tomB;gene_biotype=protein_coding;locus_tag=C9F05_RS01270;old_locus_tag=C9F05_01295
NZ_PYKE01000027.1	Protein Homology	CDS	53694	54068	.	+	0	ID=cds-WP_000344807.1;Parent=gene-C9F05_RS01270;Dbxref=GenBank:WP_000344807.1;Name=WP_000344807.1;gbkey=CDS;gene=tomB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001741190.1;locus_tag=C9F05_RS01270;product=Hha toxicity modulator TomB;protein_id=WP_000344807.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	54096	54314	.	+	.	ID=gene-C9F05_RS01275;Name=C9F05_RS01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01275;old_locus_tag=C9F05_01300
NZ_PYKE01000027.1	Protein Homology	CDS	54096	54314	.	+	0	ID=cds-WP_001280991.1;Parent=gene-C9F05_RS01275;Dbxref=GenBank:WP_001280991.1;Name=WP_001280991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459468.1;locus_tag=C9F05_RS01275;product=HHA domain-containing protein;protein_id=WP_001280991.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	54493	55044	.	+	.	ID=gene-C9F05_RS01280;Name=maa;gbkey=Gene;gene=maa;gene_biotype=protein_coding;locus_tag=C9F05_RS01280;old_locus_tag=C9F05_01305
NZ_PYKE01000027.1	Protein Homology	CDS	54493	55044	.	+	0	ID=cds-WP_001278793.1;Parent=gene-C9F05_RS01280;Dbxref=GenBank:WP_001278793.1;Name=WP_001278793.1;Ontology_term=GO:0016407;gbkey=CDS;gene=maa;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459467.1;locus_tag=C9F05_RS01280;product=maltose O-acetyltransferase;protein_id=WP_001278793.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	55160	55630	.	+	.	ID=gene-C9F05_RS01285;Name=C9F05_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01285;old_locus_tag=C9F05_01310
NZ_PYKE01000027.1	Protein Homology	CDS	55160	55630	.	+	0	ID=cds-WP_000136181.1;Parent=gene-C9F05_RS01285;Dbxref=GenBank:WP_000136181.1;Name=WP_000136181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459466.1;locus_tag=C9F05_RS01285;product=YlaC family protein;protein_id=WP_000136181.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	55686	55826	.	-	.	ID=gene-C9F05_RS01290;Name=ykgO;gbkey=Gene;gene=ykgO;gene_biotype=protein_coding;locus_tag=C9F05_RS01290;old_locus_tag=C9F05_01315
NZ_PYKE01000027.1	Protein Homology	CDS	55686	55826	.	-	0	ID=cds-WP_001197749.1;Parent=gene-C9F05_RS01290;Dbxref=GenBank:WP_001197749.1;Name=WP_001197749.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459465.1;locus_tag=C9F05_RS01290;product=type B 50S ribosomal protein L36;protein_id=WP_001197749.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	55832	56092	.	-	.	ID=gene-C9F05_RS01295;Name=C9F05_RS01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01295;old_locus_tag=C9F05_01320
NZ_PYKE01000027.1	Protein Homology	CDS	55832	56092	.	-	0	ID=cds-WP_000801415.1;Parent=gene-C9F05_RS01295;Dbxref=GenBank:WP_000801415.1;Name=WP_000801415.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459464.1;locus_tag=C9F05_RS01295;product=type B 50S ribosomal protein L31;protein_id=WP_000801415.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	56317	57867	.	+	.	ID=gene-C9F05_RS01300;Name=C9F05_RS01300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01300;old_locus_tag=C9F05_01325
NZ_PYKE01000027.1	Protein Homology	CDS	56317	57867	.	+	0	ID=cds-WP_000213139.1;Parent=gene-C9F05_RS01300;Dbxref=GenBank:WP_000213139.1;Name=WP_000213139.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459463.1;locus_tag=C9F05_RS01300;product=EAL domain-containing protein;protein_id=WP_000213139.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	57917	58013	.	-	.	ID=gene-C9F05_RS01305;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=C9F05_RS01305;old_locus_tag=C9F05_01330
NZ_PYKE01000027.1	cmsearch	SRP_RNA	57917	58013	.	-	.	ID=rna-C9F05_RS01305;Parent=gene-C9F05_RS01305;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS01305;product=signal recognition particle sRNA small type
NZ_PYKE01000027.1	cmsearch	exon	57917	58013	.	-	.	ID=exon-C9F05_RS01305-1;Parent=rna-C9F05_RS01305;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS01305;product=signal recognition particle sRNA small type
NZ_PYKE01000027.1	RefSeq	gene	58098	58487	.	+	.	ID=gene-C9F05_RS01310;Name=C9F05_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01310;old_locus_tag=C9F05_01335
NZ_PYKE01000027.1	Protein Homology	CDS	58098	58487	.	+	0	ID=cds-WP_000961285.1;Parent=gene-C9F05_RS01310;Dbxref=GenBank:WP_000961285.1;Name=WP_000961285.1;Ontology_term=GO:0006281,GO:0003677,GO:0003824,GO:0003908;gbkey=CDS;go_function=DNA binding|0003677||IEA,catalytic activity|0003824||IEA,methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459462.1;locus_tag=C9F05_RS01310;product=MGMT family protein;protein_id=WP_000961285.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	58520	59089	.	-	.	ID=gene-C9F05_RS01315;Name=C9F05_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01315;old_locus_tag=C9F05_01340
NZ_PYKE01000027.1	Protein Homology	CDS	58520	59089	.	-	0	ID=cds-WP_000779803.1;Parent=gene-C9F05_RS01315;Dbxref=GenBank:WP_000779803.1;Name=WP_000779803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459461.1;locus_tag=C9F05_RS01315;product=YbaY family lipoprotein;protein_id=WP_000779803.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	59304	60164	.	+	.	ID=gene-C9F05_RS01320;Name=tesB;gbkey=Gene;gene=tesB;gene_biotype=protein_coding;locus_tag=C9F05_RS01320;old_locus_tag=C9F05_01345
NZ_PYKE01000027.1	Protein Homology	CDS	59304	60164	.	+	0	ID=cds-WP_000084180.1;Parent=gene-C9F05_RS01320;Dbxref=GenBank:WP_000084180.1;Name=WP_000084180.1;gbkey=CDS;gene=tesB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459460.1;locus_tag=C9F05_RS01320;product=acyl-CoA thioesterase II;protein_id=WP_000084180.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	60264	61550	.	-	.	ID=gene-C9F05_RS01325;Name=amtB;gbkey=Gene;gene=amtB;gene_biotype=protein_coding;locus_tag=C9F05_RS01325;old_locus_tag=C9F05_01350
NZ_PYKE01000027.1	Protein Homology	CDS	60264	61550	.	-	0	ID=cds-WP_000684912.1;Parent=gene-C9F05_RS01325;Dbxref=GenBank:WP_000684912.1;Name=WP_000684912.1;Ontology_term=GO:0072488,GO:0008519,GO:0005886;gbkey=CDS;gene=amtB;go_component=plasma membrane|0005886||IEA;go_function=ammonium channel activity|0008519||IEA;go_process=ammonium transmembrane transport|0072488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459459.1;locus_tag=C9F05_RS01325;product=ammonium transporter AmtB;protein_id=WP_000684912.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	61582	61920	.	-	.	ID=gene-C9F05_RS01330;Name=glnK;gbkey=Gene;gene=glnK;gene_biotype=protein_coding;locus_tag=C9F05_RS01330;old_locus_tag=C9F05_01355
NZ_PYKE01000027.1	Protein Homology	CDS	61582	61920	.	-	0	ID=cds-WP_000780341.1;Parent=gene-C9F05_RS01330;Dbxref=GenBank:WP_000780341.1;Name=WP_000780341.1;Ontology_term=GO:0006808,GO:0030234;gbkey=CDS;gene=glnK;go_function=enzyme regulator activity|0030234||IEA;go_process=regulation of nitrogen utilization|0006808||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459458.1;locus_tag=C9F05_RS01330;product=P-II family nitrogen regulator;protein_id=WP_000780341.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	62133	63914	.	-	.	ID=gene-C9F05_RS01340;Name=C9F05_RS01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01340;old_locus_tag=C9F05_01365
NZ_PYKE01000027.1	Protein Homology	CDS	62133	63914	.	-	0	ID=cds-WP_001256070.1;Parent=gene-C9F05_RS01340;Dbxref=GenBank:WP_001256070.1;Name=WP_001256070.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459457.1;locus_tag=C9F05_RS01340;product=SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;protein_id=WP_001256070.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	63907	65679	.	-	.	ID=gene-C9F05_RS01345;Name=C9F05_RS01345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01345;old_locus_tag=C9F05_01370
NZ_PYKE01000027.1	Protein Homology	CDS	63907	65679	.	-	0	ID=cds-WP_001235563.1;Parent=gene-C9F05_RS01345;Dbxref=GenBank:WP_001235563.1;Name=WP_001235563.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459456.1;locus_tag=C9F05_RS01345;product=SmdA family multidrug ABC transporter permease/ATP-binding protein;protein_id=WP_001235563.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	65720	66178	.	-	.	ID=gene-C9F05_RS01350;Name=decR;gbkey=Gene;gene=decR;gene_biotype=protein_coding;locus_tag=C9F05_RS01350;old_locus_tag=C9F05_01375
NZ_PYKE01000027.1	Protein Homology	CDS	65720	66178	.	-	0	ID=cds-WP_000884593.1;Parent=gene-C9F05_RS01350;Dbxref=GenBank:WP_000884593.1;Name=WP_000884593.1;gbkey=CDS;gene=decR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459455.1;locus_tag=C9F05_RS01350;product=DNA-binding transcriptional regulator DecR;protein_id=WP_000884593.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	66291	67346	.	+	.	ID=gene-C9F05_RS01355;Name=cdsH;gbkey=Gene;gene=cdsH;gene_biotype=protein_coding;locus_tag=C9F05_RS01355;old_locus_tag=C9F05_01380
NZ_PYKE01000027.1	Protein Homology	CDS	66291	67346	.	+	0	ID=cds-WP_000987850.1;Parent=gene-C9F05_RS01355;Dbxref=GenBank:WP_000987850.1;Name=WP_000987850.1;gbkey=CDS;gene=cdsH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459454.1;locus_tag=C9F05_RS01355;product=cysteine desulfhydrase;protein_id=WP_000987850.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	67396	68214	.	-	.	ID=gene-C9F05_RS01360;Name=cof;gbkey=Gene;gene=cof;gene_biotype=protein_coding;locus_tag=C9F05_RS01360;old_locus_tag=C9F05_01385
NZ_PYKE01000027.1	Protein Homology	CDS	67396	68214	.	-	0	ID=cds-WP_000113035.1;Parent=gene-C9F05_RS01360;Dbxref=GenBank:WP_000113035.1;Name=WP_000113035.1;Ontology_term=GO:0016818;gbkey=CDS;gene=cof;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459453.1;locus_tag=C9F05_RS01360;product=HMP-PP phosphatase;protein_id=WP_000113035.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	68315	70015	.	+	.	ID=gene-C9F05_RS01365;Name=C9F05_RS01365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01365;old_locus_tag=C9F05_01390
NZ_PYKE01000027.1	Protein Homology	CDS	68315	70015	.	+	0	ID=cds-WP_001238174.1;Parent=gene-C9F05_RS01365;Dbxref=GenBank:WP_001238174.1;Name=WP_001238174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459452.1;locus_tag=C9F05_RS01365;product=SgrR family transcriptional regulator;protein_id=WP_001238174.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	70080	70775	.	+	.	ID=gene-C9F05_RS01370;Name=queC;gbkey=Gene;gene=queC;gene_biotype=protein_coding;locus_tag=C9F05_RS01370;old_locus_tag=C9F05_01395
NZ_PYKE01000027.1	Protein Homology	CDS	70080	70775	.	+	0	ID=cds-WP_000817201.1;Parent=gene-C9F05_RS01370;Dbxref=GenBank:WP_000817201.1;Name=WP_000817201.1;gbkey=CDS;gene=queC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459451.1;locus_tag=C9F05_RS01370;product=7-cyano-7-deazaguanine synthase QueC;protein_id=WP_000817201.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	70881	71279	.	-	.	ID=gene-C9F05_RS01375;Name=fadM;gbkey=Gene;gene=fadM;gene_biotype=protein_coding;locus_tag=C9F05_RS01375;old_locus_tag=C9F05_01400
NZ_PYKE01000027.1	Protein Homology	CDS	70881	71279	.	-	0	ID=cds-WP_001194543.1;Parent=gene-C9F05_RS01375;Dbxref=GenBank:WP_001194543.1;Name=WP_001194543.1;gbkey=CDS;gene=fadM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459450.1;locus_tag=C9F05_RS01375;product=long-chain acyl-CoA thioesterase FadM;protein_id=WP_001194543.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	71383	71757	.	-	.	ID=gene-C9F05_RS01380;Name=C9F05_RS01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01380;old_locus_tag=C9F05_01405
NZ_PYKE01000027.1	Protein Homology	CDS	71383	71757	.	-	0	ID=cds-WP_000680322.1;Parent=gene-C9F05_RS01380;Dbxref=GenBank:WP_000680322.1;Name=WP_000680322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459449.1;locus_tag=C9F05_RS01380;product=helix-hairpin-helix domain-containing protein;protein_id=WP_000680322.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	71907	73778	.	-	.	ID=gene-C9F05_RS01385;Name=ppiD;gbkey=Gene;gene=ppiD;gene_biotype=protein_coding;locus_tag=C9F05_RS01385;old_locus_tag=C9F05_01410
NZ_PYKE01000027.1	Protein Homology	CDS	71907	73778	.	-	0	ID=cds-WP_000969434.1;Parent=gene-C9F05_RS01385;Dbxref=GenBank:WP_000969434.1;Name=WP_000969434.1;Ontology_term=GO:0003755;gbkey=CDS;gene=ppiD;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459448.1;locus_tag=C9F05_RS01385;product=peptidylprolyl isomerase;protein_id=WP_000969434.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	74069	74359	.	-	.	ID=gene-C9F05_RS01390;Name=hupB;gbkey=Gene;gene=hupB;gene_biotype=protein_coding;locus_tag=C9F05_RS01390;old_locus_tag=C9F05_01415
NZ_PYKE01000027.1	Protein Homology	CDS	74069	74359	.	-	0	ID=cds-WP_254888479.1;Parent=gene-C9F05_RS01390;Dbxref=GenBank:WP_254888479.1;Name=WP_254888479.1;gbkey=CDS;gene=hupB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013356995.1;locus_tag=C9F05_RS01390;product=nucleoid-associated protein HU-beta;protein_id=WP_254888479.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	74550	76904	.	-	.	ID=gene-C9F05_RS01395;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=C9F05_RS01395;old_locus_tag=C9F05_01420
NZ_PYKE01000027.1	Protein Homology	CDS	74550	76904	.	-	0	ID=cds-WP_001067723.1;Parent=gene-C9F05_RS01395;Dbxref=GenBank:WP_001067723.1;Name=WP_001067723.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0016887,GO:0043565;gbkey=CDS;gene=lon;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA,ATP hydrolysis activity|0016887||IEA,sequence-specific DNA binding|0043565||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001469947.1;locus_tag=C9F05_RS01395;product=endopeptidase La;protein_id=WP_001067723.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	77090	78361	.	-	.	ID=gene-C9F05_RS01400;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=C9F05_RS01400;old_locus_tag=C9F05_01425
NZ_PYKE01000027.1	Protein Homology	CDS	77090	78361	.	-	0	ID=cds-WP_000130314.1;Parent=gene-C9F05_RS01400;Dbxref=GenBank:WP_000130314.1;Name=WP_000130314.1;Ontology_term=GO:0005524,GO:0051082,GO:0140662,GO:0009368;gbkey=CDS;gene=clpX;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP binding|0005524||IEA,unfolded protein binding|0051082||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001396736.1;locus_tag=C9F05_RS01400;product=ATP-dependent protease ATP-binding subunit ClpX;protein_id=WP_000130314.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	78613	79236	.	-	.	ID=gene-C9F05_RS01405;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=C9F05_RS01405;old_locus_tag=C9F05_01430
NZ_PYKE01000027.1	Protein Homology	CDS	78613	79236	.	-	0	ID=cds-WP_000122257.1;Parent=gene-C9F05_RS01405;Dbxref=GenBank:WP_000122257.1;Name=WP_000122257.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0009368;gbkey=CDS;gene=clpP;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006809880.1;locus_tag=C9F05_RS01405;product=ATP-dependent Clp endopeptidase proteolytic subunit ClpP;protein_id=WP_000122257.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	79483	80781	.	-	.	ID=gene-C9F05_RS01410;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=C9F05_RS01410;old_locus_tag=C9F05_01435
NZ_PYKE01000027.1	Protein Homology	CDS	79483	80781	.	-	0	ID=cds-WP_001198406.1;Parent=gene-C9F05_RS01410;Dbxref=GenBank:WP_001198406.1;Name=WP_001198406.1;Ontology_term=GO:0015031,GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process=protein transport|0015031||IEA,'de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001716227.1;locus_tag=C9F05_RS01410;product=trigger factor;protein_id=WP_001198406.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	81128	81445	.	-	.	ID=gene-C9F05_RS01420;Name=bolA;gbkey=Gene;gene=bolA;gene_biotype=protein_coding;locus_tag=C9F05_RS01420;old_locus_tag=C9F05_01445
NZ_PYKE01000027.1	Protein Homology	CDS	81128	81445	.	-	0	ID=cds-WP_000973433.1;Parent=gene-C9F05_RS01420;Dbxref=GenBank:WP_000973433.1;Name=WP_000973433.1;gbkey=CDS;gene=bolA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459442.1;locus_tag=C9F05_RS01420;product=transcriptional regulator BolA;protein_id=WP_000973433.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	81749	82327	.	+	.	ID=gene-C9F05_RS01425;Name=C9F05_RS01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01425;old_locus_tag=C9F05_01450
NZ_PYKE01000027.1	Protein Homology	CDS	81749	82327	.	+	0	ID=cds-WP_001537832.1;Parent=gene-C9F05_RS01425;Dbxref=GenBank:WP_001537832.1;Name=WP_001537832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225436.1;locus_tag=C9F05_RS01425;product=lipoprotein;protein_id=WP_001537832.1;transl_table=11
NZ_PYKE01000027.1	RefSeq	gene	82371	83846	.	+	.	ID=gene-C9F05_RS01430;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=protein_coding;locus_tag=C9F05_RS01430;old_locus_tag=C9F05_01455
NZ_PYKE01000027.1	Protein Homology	CDS	82371	83846	.	+	0	ID=cds-WP_135369953.1;Parent=gene-C9F05_RS01430;Dbxref=GenBank:WP_135369953.1;Name=WP_135369953.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ampG;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459440.1;locus_tag=C9F05_RS01430;product=muropeptide MFS transporter AmpG;protein_id=WP_135369953.1;transl_table=11
##sequence-region NZ_PYKE01000193.1 1 5574
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000193.1	RefSeq	region	1	5574	.	+	.	ID=NZ_PYKE01000193.1:1..5574;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000193.1	RefSeq	gene	239	1999	.	-	.	ID=gene-C9F05_RS12660;Name=ycaO;gbkey=Gene;gene=ycaO;gene_biotype=protein_coding;locus_tag=C9F05_RS12660;old_locus_tag=C9F05_13030
NZ_PYKE01000193.1	Protein Homology	CDS	239	1999	.	-	0	ID=cds-WP_135370333.1;Parent=gene-C9F05_RS12660;Dbxref=GenBank:WP_135370333.1;Name=WP_135370333.1;gbkey=CDS;gene=ycaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459950.1;locus_tag=C9F05_RS12660;product=30S ribosomal protein S12 methylthiotransferase accessory factor YcaO;protein_id=WP_135370333.1;transl_table=11
NZ_PYKE01000193.1	RefSeq	gene	2136	2828	.	+	.	ID=gene-C9F05_RS12665;Name=C9F05_RS12665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12665;old_locus_tag=C9F05_13035
NZ_PYKE01000193.1	Protein Homology	CDS	2136	2828	.	+	0	ID=cds-WP_000642866.1;Parent=gene-C9F05_RS12665;Dbxref=GenBank:WP_000642866.1;Name=WP_000642866.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459951.1;locus_tag=C9F05_RS12665;product=DUF421 domain-containing protein;protein_id=WP_000642866.1;transl_table=11
NZ_PYKE01000193.1	RefSeq	gene	3014	4102	.	+	.	ID=gene-C9F05_RS12670;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=C9F05_RS12670;old_locus_tag=C9F05_13040
NZ_PYKE01000193.1	Protein Homology	CDS	3014	4102	.	+	0	ID=cds-WP_000079590.1;Parent=gene-C9F05_RS12670;Dbxref=GenBank:WP_000079590.1;Name=WP_000079590.1;Ontology_term=GO:0006564,GO:0003824,GO:0004648;gbkey=CDS;gene=serC;go_function=catalytic activity|0003824||IEA,O-phospho-L-serine:2-oxoglutarate aminotransferase activity|0004648||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459952.1;locus_tag=C9F05_RS12670;product=3-phosphoserine/phosphohydroxythreonine transaminase;protein_id=WP_000079590.1;transl_table=11
NZ_PYKE01000193.1	RefSeq	gene	4173	5456	.	+	.	ID=gene-C9F05_RS12675;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=C9F05_RS12675;old_locus_tag=C9F05_13045
NZ_PYKE01000193.1	Protein Homology	CDS	4173	5456	.	+	0	ID=cds-WP_061380416.1;Parent=gene-C9F05_RS12675;Dbxref=GenBank:WP_061380416.1;Name=WP_061380416.1;Ontology_term=GO:0009073,GO:0003866;gbkey=CDS;gene=aroA;go_function=3-phosphoshikimate 1-carboxyvinyltransferase activity|0003866||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459953.1;locus_tag=C9F05_RS12675;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_061380416.1;transl_table=11
##sequence-region NZ_PYKE01000120.1 1 5570
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000120.1	RefSeq	region	1	5570	.	+	.	ID=NZ_PYKE01000120.1:1..5570;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000120.1	RefSeq	gene	42	2681	.	+	.	ID=gene-C9F05_RS08765;Name=tssH;gbkey=Gene;gene=tssH;gene_biotype=protein_coding;gene_synonym=clpV;locus_tag=C9F05_RS08765;old_locus_tag=C9F05_09000
NZ_PYKE01000120.1	Protein Homology	CDS	42	2681	.	+	0	ID=cds-WP_135370188.1;Parent=gene-C9F05_RS08765;Dbxref=GenBank:WP_135370188.1;Name=WP_135370188.1;Ontology_term=GO:0033103,GO:0016887,GO:0033104;gbkey=CDS;gene=tssH;go_component=type VI protein secretion system complex|0033104||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459269.1;locus_tag=C9F05_RS08765;product=type VI secretion system ATPase TssH;protein_id=WP_135370188.1;transl_table=11
NZ_PYKE01000120.1	RefSeq	gene	2781	3323	.	+	.	ID=gene-C9F05_RS08770;Name=tssB;gbkey=Gene;gene=tssB;gene_biotype=protein_coding;locus_tag=C9F05_RS08770;old_locus_tag=C9F05_09005
NZ_PYKE01000120.1	Protein Homology	CDS	2781	3323	.	+	0	ID=cds-WP_000996815.1;Parent=gene-C9F05_RS08770;Dbxref=GenBank:WP_000996815.1;Name=WP_000996815.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssB;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459270.1;locus_tag=C9F05_RS08770;product=type VI secretion system contractile sheath small subunit;protein_id=WP_000996815.1;transl_table=11
NZ_PYKE01000120.1	RefSeq	gene	3347	4855	.	+	.	ID=gene-C9F05_RS08775;Name=tssC;gbkey=Gene;gene=tssC;gene_biotype=protein_coding;locus_tag=C9F05_RS08775;old_locus_tag=C9F05_09010
NZ_PYKE01000120.1	Protein Homology	CDS	3347	4855	.	+	0	ID=cds-WP_000013884.1;Parent=gene-C9F05_RS08775;Dbxref=GenBank:WP_000013884.1;Name=WP_000013884.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;gene=tssC;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459271.1;locus_tag=C9F05_RS08775;product=type VI secretion system contractile sheath large subunit;protein_id=WP_000013884.1;transl_table=11
NZ_PYKE01000120.1	RefSeq	gene	4872	5030	.	+	.	ID=gene-C9F05_RS08780;Name=C9F05_RS08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08780;old_locus_tag=C9F05_09015
NZ_PYKE01000120.1	Protein Homology	CDS	4872	5030	.	+	0	ID=cds-WP_001584850.1;Parent=gene-C9F05_RS08780;Dbxref=GenBank:WP_001584850.1;Name=WP_001584850.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033857.1;locus_tag=C9F05_RS08780;product=BPSL0067 family protein;protein_id=WP_001584850.1;transl_table=11
NZ_PYKE01000120.1	RefSeq	gene	5043	5489	.	+	.	ID=gene-C9F05_RS08785;Name=C9F05_RS08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08785;old_locus_tag=C9F05_09020
NZ_PYKE01000120.1	Protein Homology	CDS	5043	5489	.	+	0	ID=cds-WP_001651541.1;Parent=gene-C9F05_RS08785;Dbxref=GenBank:WP_001651541.1;Name=WP_001651541.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001535435.1;locus_tag=C9F05_RS08785;product=STY0301 family protein;protein_id=WP_001651541.1;transl_table=11
##sequence-region NZ_PYKE01000076.1 1 31870
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000076.1	RefSeq	region	1	31870	.	+	.	ID=NZ_PYKE01000076.1:1..31870;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000076.1	RefSeq	gene	15	956	.	+	.	ID=gene-C9F05_RS04935;Name=alsB;gbkey=Gene;gene=alsB;gene_biotype=protein_coding;locus_tag=C9F05_RS04935;old_locus_tag=C9F05_05010
NZ_PYKE01000076.1	Protein Homology	CDS	15	956	.	+	0	ID=cds-WP_031605715.1;Parent=gene-C9F05_RS04935;Dbxref=GenBank:WP_031605715.1;Name=WP_031605715.1;gbkey=CDS;gene=alsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418512.1;locus_tag=C9F05_RS04935;product=D-allose transporter substrate-binding protein;protein_id=WP_031605715.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	1076	2608	.	+	.	ID=gene-C9F05_RS04940;Name=alsA;gbkey=Gene;gene=alsA;gene_biotype=protein_coding;locus_tag=C9F05_RS04940;old_locus_tag=C9F05_05015
NZ_PYKE01000076.1	Protein Homology	CDS	1076	2608	.	+	0	ID=cds-WP_031605714.1;Parent=gene-C9F05_RS04940;Dbxref=GenBank:WP_031605714.1;Name=WP_031605714.1;gbkey=CDS;gene=alsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418511.1;locus_tag=C9F05_RS04940;product=D-allose ABC transporter ATP-binding protein AlsA;protein_id=WP_031605714.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	2587	3567	.	+	.	ID=gene-C9F05_RS04945;Name=alsC;gbkey=Gene;gene=alsC;gene_biotype=protein_coding;locus_tag=C9F05_RS04945;old_locus_tag=C9F05_05020
NZ_PYKE01000076.1	Protein Homology	CDS	2587	3567	.	+	0	ID=cds-WP_031605713.1;Parent=gene-C9F05_RS04945;Dbxref=GenBank:WP_031605713.1;Name=WP_031605713.1;gbkey=CDS;gene=alsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418510.1;locus_tag=C9F05_RS04945;product=D-allose ABC transporter permease;protein_id=WP_031605713.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	3578	4273	.	+	.	ID=gene-C9F05_RS04950;Name=alsE;gbkey=Gene;gene=alsE;gene_biotype=protein_coding;locus_tag=C9F05_RS04950;old_locus_tag=C9F05_05025
NZ_PYKE01000076.1	Protein Homology	CDS	3578	4273	.	+	0	ID=cds-WP_031605712.1;Parent=gene-C9F05_RS04950;Dbxref=GenBank:WP_031605712.1;Name=WP_031605712.1;gbkey=CDS;gene=alsE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418509.1;locus_tag=C9F05_RS04950;product=D-allulose 6-phosphate 3-epimerase;protein_id=WP_031605712.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	4257	5162	.	+	.	ID=gene-C9F05_RS04955;Name=alsK;gbkey=Gene;gene=alsK;gene_biotype=protein_coding;locus_tag=C9F05_RS04955;old_locus_tag=C9F05_05030
NZ_PYKE01000076.1	Protein Homology	CDS	4257	5162	.	+	0	ID=cds-WP_031605711.1;Parent=gene-C9F05_RS04955;Dbxref=GenBank:WP_031605711.1;Name=WP_031605711.1;Ontology_term=GO:0019316,GO:0019200;gbkey=CDS;gene=alsK;go_function=carbohydrate kinase activity|0019200||IEA;go_process=D-allose catabolic process|0019316||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012907525.1;locus_tag=C9F05_RS04955;product=allose kinase;protein_id=WP_031605711.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	5340	6248	.	+	.	ID=gene-C9F05_RS04960;Name=lpxO;gbkey=Gene;gene=lpxO;gene_biotype=protein_coding;locus_tag=C9F05_RS04960;old_locus_tag=C9F05_05035
NZ_PYKE01000076.1	Protein Homology	CDS	5340	6248	.	+	0	ID=cds-WP_106805891.1;Parent=gene-C9F05_RS04960;Dbxref=GenBank:WP_106805891.1;Name=WP_106805891.1;Ontology_term=GO:0018193;gbkey=CDS;gene=lpxO;go_process=peptidyl-amino acid modification|0018193||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463151.1;locus_tag=C9F05_RS04960;product=lipid A hydroxylase LpxO;protein_id=WP_106805891.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	6603	8750	.	+	.	ID=gene-C9F05_RS04965;Name=C9F05_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04965;old_locus_tag=C9F05_05040
NZ_PYKE01000076.1	Protein Homology	CDS	6603	8750	.	+	0	ID=cds-WP_011233236.1;Parent=gene-C9F05_RS04965;Dbxref=GenBank:WP_011233236.1;Name=WP_011233236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463150.1;locus_tag=C9F05_RS04965;product=formate dehydrogenase H subunit alpha%2C selenocysteine-containing;protein_id=WP_011233236.1;transl_except=(pos:7020..7022%2Caa:Sec);transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	8927	9616	.	+	.	ID=gene-C9F05_RS04970;Name=yjcO;gbkey=Gene;gene=yjcO;gene_biotype=protein_coding;locus_tag=C9F05_RS04970;old_locus_tag=C9F05_05045
NZ_PYKE01000076.1	Protein Homology	CDS	8927	9616	.	+	0	ID=cds-WP_106805890.1;Parent=gene-C9F05_RS04970;Dbxref=GenBank:WP_106805890.1;Name=WP_106805890.1;gbkey=CDS;gene=yjcO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463149.1;locus_tag=C9F05_RS04970;product=Sel1 family TPR-like repeat protein YjcO;protein_id=WP_106805890.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	9774	11084	.	-	.	ID=gene-C9F05_RS04980;Name=gltP;gbkey=Gene;gene=gltP;gene_biotype=protein_coding;locus_tag=C9F05_RS04980;old_locus_tag=C9F05_05050
NZ_PYKE01000076.1	Protein Homology	CDS	9774	11084	.	-	0	ID=cds-WP_000793278.1;Parent=gene-C9F05_RS04980;Dbxref=GenBank:WP_000793278.1;Name=WP_000793278.1;Ontology_term=GO:0006835,GO:0015293,GO:0016020;gbkey=CDS;gene=gltP;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=dicarboxylic acid transport|0006835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463148.1;locus_tag=C9F05_RS04980;product=glutamate/aspartate:proton symporter GltP;protein_id=WP_000793278.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	11429	12049	.	-	.	ID=gene-C9F05_RS04985;Name=nrfG;gbkey=Gene;gene=nrfG;gene_biotype=protein_coding;locus_tag=C9F05_RS04985;old_locus_tag=C9F05_05055
NZ_PYKE01000076.1	Protein Homology	CDS	11429	12049	.	-	0	ID=cds-WP_000083223.1;Parent=gene-C9F05_RS04985;Dbxref=GenBank:WP_000083223.1;Name=WP_000083223.1;gbkey=CDS;gene=nrfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463147.1;locus_tag=C9F05_RS04985;product=heme lyase NrfEFG subunit NrfG;protein_id=WP_000083223.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	12046	14268	.	-	.	ID=gene-C9F05_RS04990;Name=nrfEF;gbkey=Gene;gene=nrfEF;gene_biotype=protein_coding;locus_tag=C9F05_RS04990;old_locus_tag=C9F05_05060
NZ_PYKE01000076.1	Protein Homology	CDS	12046	14268	.	-	0	ID=cds-WP_135370075.1;Parent=gene-C9F05_RS04990;Dbxref=GenBank:WP_135370075.1;Name=WP_135370075.1;gbkey=CDS;gene=nrfEF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=C9F05_RS04990;product=heme lyase NrfEFG subunit NrfEF;protein_id=WP_135370075.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	14261	15217	.	-	.	ID=gene-C9F05_RS04995;Name=nrfD;gbkey=Gene;gene=nrfD;gene_biotype=protein_coding;locus_tag=C9F05_RS04995;old_locus_tag=C9F05_05065
NZ_PYKE01000076.1	Protein Homology	CDS	14261	15217	.	-	0	ID=cds-WP_135370076.1;Parent=gene-C9F05_RS04995;Dbxref=GenBank:WP_135370076.1;Name=WP_135370076.1;gbkey=CDS;gene=nrfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463145.1;locus_tag=C9F05_RS04995;product=cytochrome c nitrite reductase subunit NrfD;protein_id=WP_135370076.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	15214	15885	.	-	.	ID=gene-C9F05_RS05000;Name=nrfC;gbkey=Gene;gene=nrfC;gene_biotype=protein_coding;locus_tag=C9F05_RS05000;old_locus_tag=C9F05_05070
NZ_PYKE01000076.1	Protein Homology	CDS	15214	15885	.	-	0	ID=cds-WP_058111201.1;Parent=gene-C9F05_RS05000;Dbxref=GenBank:WP_058111201.1;Name=WP_058111201.1;gbkey=CDS;gene=nrfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463144.1;locus_tag=C9F05_RS05000;product=cytochrome c nitrite reductase Fe-S protein;protein_id=WP_058111201.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	15882	16448	.	-	.	ID=gene-C9F05_RS05005;Name=nrfB;gbkey=Gene;gene=nrfB;gene_biotype=protein_coding;locus_tag=C9F05_RS05005;old_locus_tag=C9F05_05075
NZ_PYKE01000076.1	Protein Homology	CDS	15882	16448	.	-	0	ID=cds-WP_000115065.1;Parent=gene-C9F05_RS05005;Dbxref=GenBank:WP_000115065.1;Name=WP_000115065.1;Ontology_term=GO:0008152,GO:0042597;gbkey=CDS;gene=nrfB;go_component=periplasmic space|0042597||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418495.2;locus_tag=C9F05_RS05005;product=cytochrome c nitrite reductase pentaheme subunit;protein_id=WP_000115065.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	16493	17929	.	-	.	ID=gene-C9F05_RS05010;Name=nrfA;gbkey=Gene;gene=nrfA;gene_biotype=protein_coding;locus_tag=C9F05_RS05010;old_locus_tag=C9F05_05080
NZ_PYKE01000076.1	Protein Homology	CDS	16493	17929	.	-	0	ID=cds-WP_000101776.1;Parent=gene-C9F05_RS05010;Dbxref=GenBank:WP_000101776.1;Name=WP_000101776.1;Ontology_term=GO:0008152,GO:0005509,GO:0020037,GO:0042279,GO:0042597;gbkey=CDS;gene=nrfA;go_component=periplasmic space|0042597||IEA;go_function=calcium ion binding|0005509||IEA,heme binding|0020037||IEA,nitrite reductase (cytochrome%2C ammonia-forming) activity|0042279||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463142.1;locus_tag=C9F05_RS05010;product=ammonia-forming nitrite reductase cytochrome c552 subunit;protein_id=WP_000101776.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	18361	20319	.	+	.	ID=gene-C9F05_RS05015;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=C9F05_RS05015;old_locus_tag=C9F05_05090
NZ_PYKE01000076.1	Protein Homology	CDS	18361	20319	.	+	0	ID=cds-WP_000083871.1;Parent=gene-C9F05_RS05015;Dbxref=GenBank:WP_000083871.1;Name=WP_000083871.1;Ontology_term=GO:0019427,GO:0003987,GO:0016208;gbkey=CDS;gene=acs;go_function=acetate-CoA ligase activity|0003987||IEA,AMP binding|0016208||IEA;go_process=acetyl-CoA biosynthetic process from acetate|0019427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463140.1;locus_tag=C9F05_RS05015;product=acetate--CoA ligase;protein_id=WP_000083871.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	20559	20873	.	+	.	ID=gene-C9F05_RS05020;Name=C9F05_RS05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05020;old_locus_tag=C9F05_05100
NZ_PYKE01000076.1	Protein Homology	CDS	20559	20873	.	+	0	ID=cds-WP_000999620.1;Parent=gene-C9F05_RS05020;Dbxref=GenBank:WP_000999620.1;Name=WP_000999620.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463139.1;locus_tag=C9F05_RS05020;product=DUF485 domain-containing protein;protein_id=WP_000999620.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	20870	22519	.	+	.	ID=gene-C9F05_RS05025;Name=actP;gbkey=Gene;gene=actP;gene_biotype=protein_coding;locus_tag=C9F05_RS05025;old_locus_tag=C9F05_05105
NZ_PYKE01000076.1	Protein Homology	CDS	20870	22519	.	+	0	ID=cds-WP_000832536.1;Parent=gene-C9F05_RS05025;Dbxref=GenBank:WP_000832536.1;Name=WP_000832536.1;Ontology_term=GO:0006814,GO:0015123,GO:0015370,GO:0031402,GO:0005886;gbkey=CDS;gene=actP;go_component=plasma membrane|0005886||IEA;go_function=acetate transmembrane transporter activity|0015123||IEA,solute:sodium symporter activity|0015370||IEA,sodium ion binding|0031402||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463138.1;locus_tag=C9F05_RS05025;product=cation/acetate symporter ActP;protein_id=WP_000832536.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	22558	23247	.	-	.	ID=gene-C9F05_RS05030;Name=C9F05_RS05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05030;old_locus_tag=C9F05_05110
NZ_PYKE01000076.1	Protein Homology	CDS	22558	23247	.	-	0	ID=cds-WP_001067096.1;Parent=gene-C9F05_RS05030;Dbxref=GenBank:WP_001067096.1;Name=WP_001067096.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463137.1;locus_tag=C9F05_RS05030;product=LrgB family protein;protein_id=WP_001067096.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	23240	23650	.	-	.	ID=gene-C9F05_RS05035;Name=C9F05_RS05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05035;old_locus_tag=C9F05_05115
NZ_PYKE01000076.1	Protein Homology	CDS	23240	23650	.	-	0	ID=cds-WP_000257347.1;Parent=gene-C9F05_RS05035;Dbxref=GenBank:WP_000257347.1;Name=WP_000257347.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463136.1;locus_tag=C9F05_RS05035;product=CidA/LrgA family protein;protein_id=WP_000257347.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	23754	24641	.	+	.	ID=gene-C9F05_RS05040;Name=C9F05_RS05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05040;old_locus_tag=C9F05_05120
NZ_PYKE01000076.1	Protein Homology	CDS	23754	24641	.	+	0	ID=cds-WP_000354962.1;Parent=gene-C9F05_RS05040;Dbxref=GenBank:WP_000354962.1;Name=WP_000354962.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463135.1;locus_tag=C9F05_RS05040;product=LysR family transcriptional regulator;protein_id=WP_000354962.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	24736	26382	.	-	.	ID=gene-C9F05_RS05045;Name=C9F05_RS05045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05045;old_locus_tag=C9F05_05125
NZ_PYKE01000076.1	Protein Homology	CDS	24736	26382	.	-	0	ID=cds-WP_000402189.1;Parent=gene-C9F05_RS05045;Dbxref=GenBank:WP_000402189.1;Name=WP_000402189.1;Ontology_term=GO:0006814,GO:0006885,GO:1902600,GO:0015385,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463134.1;locus_tag=C9F05_RS05045;product=Na+/H+ antiporter;protein_id=WP_000402189.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	26532	27881	.	-	.	ID=gene-C9F05_RS05055;Name=ghxP;gbkey=Gene;gene=ghxP;gene_biotype=protein_coding;gene_synonym=yjcD;locus_tag=C9F05_RS05055;old_locus_tag=C9F05_05135
NZ_PYKE01000076.1	Protein Homology	CDS	26532	27881	.	-	0	ID=cds-WP_135370077.1;Parent=gene-C9F05_RS05055;Dbxref=GenBank:WP_135370077.1;Name=WP_135370077.1;gbkey=CDS;gene=ghxP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132609.1;locus_tag=C9F05_RS05055;product=guanine/hypoxanthine transporter GhxP;protein_id=WP_135370077.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	28228	28896	.	-	.	ID=gene-C9F05_RS05060;Name=C9F05_RS05060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05060;old_locus_tag=C9F05_05145
NZ_PYKE01000076.1	Protein Homology	CDS	28228	28896	.	-	0	ID=cds-WP_000958575.1;Parent=gene-C9F05_RS05060;Dbxref=GenBank:WP_000958575.1;Name=WP_000958575.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463132.1;locus_tag=C9F05_RS05060;product=glutathione S-transferase family protein;protein_id=WP_000958575.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	29189	29647	.	-	.	ID=gene-C9F05_RS05065;Name=soxR;gbkey=Gene;gene=soxR;gene_biotype=protein_coding;locus_tag=C9F05_RS05065;old_locus_tag=C9F05_05150
NZ_PYKE01000076.1	Protein Homology	CDS	29189	29647	.	-	0	ID=cds-WP_000412686.1;Parent=gene-C9F05_RS05065;Dbxref=GenBank:WP_000412686.1;Name=WP_000412686.1;Ontology_term=GO:0006355,GO:0006979,GO:0003700,GO:0051537;gbkey=CDS;gene=soxR;go_function=DNA-binding transcription factor activity|0003700||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463131.1;locus_tag=C9F05_RS05065;product=redox-sensitive transcriptional activator SoxR;protein_id=WP_000412686.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	29734	30057	.	+	.	ID=gene-C9F05_RS05070;Name=soxS;gbkey=Gene;gene=soxS;gene_biotype=protein_coding;locus_tag=C9F05_RS05070;old_locus_tag=C9F05_05155
NZ_PYKE01000076.1	Protein Homology	CDS	29734	30057	.	+	0	ID=cds-WP_000019483.1;Parent=gene-C9F05_RS05070;Dbxref=GenBank:WP_000019483.1;Name=WP_000019483.1;gbkey=CDS;gene=soxS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463130.1;locus_tag=C9F05_RS05070;product=superoxide response transcriptional regulator SoxS;protein_id=WP_000019483.1;transl_table=11
NZ_PYKE01000076.1	RefSeq	gene	30045	31646	.	-	.	ID=gene-C9F05_RS05075;Name=C9F05_RS05075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05075;old_locus_tag=C9F05_05160
NZ_PYKE01000076.1	Protein Homology	CDS	30045	31646	.	-	0	ID=cds-WP_135370078.1;Parent=gene-C9F05_RS05075;Dbxref=GenBank:WP_135370078.1;Name=WP_135370078.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463129.1;locus_tag=C9F05_RS05075;product=EAL domain-containing protein;protein_id=WP_135370078.1;transl_table=11
##sequence-region NZ_PYKE01000188.1 1 5425
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000188.1	RefSeq	region	1	5425	.	+	.	ID=NZ_PYKE01000188.1:1..5425;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000188.1	RefSeq	gene	1	204	.	-	.	ID=gene-C9F05_RS23680;Name=C9F05_RS23680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23680;old_locus_tag=C9F05_12745;partial=true;start_range=.,1
NZ_PYKE01000188.1	GeneMarkS-2+	CDS	1	204	.	-	0	ID=cds-WP_217810223.1;Parent=gene-C9F05_RS23680;Dbxref=GenBank:WP_217810223.1;Name=WP_217810223.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23680;partial=true;product=hypothetical protein;protein_id=WP_217810223.1;start_range=.,1;transl_table=11
NZ_PYKE01000188.1	RefSeq	gene	251	1039	.	-	.	ID=gene-C9F05_RS12395;Name=envF;gbkey=Gene;gene=envF;gene_biotype=protein_coding;locus_tag=C9F05_RS12395;old_locus_tag=C9F05_12750
NZ_PYKE01000188.1	Protein Homology	CDS	251	1039	.	-	0	ID=cds-WP_039590712.1;Parent=gene-C9F05_RS12395;Dbxref=GenBank:WP_039590712.1;Name=WP_039590712.1;gbkey=CDS;gene=envF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460210.1;locus_tag=C9F05_RS12395;product=putative envelope lipoprotein EnvF;protein_id=WP_039590712.1;transl_table=11
NZ_PYKE01000188.1	RefSeq	gene	1529	1768	.	-	.	ID=gene-C9F05_RS12400;Name=msgA;gbkey=Gene;gene=msgA;gene_biotype=protein_coding;locus_tag=C9F05_RS12400;old_locus_tag=C9F05_12760
NZ_PYKE01000188.1	Protein Homology	CDS	1529	1768	.	-	0	ID=cds-WP_000497451.1;Parent=gene-C9F05_RS12400;Dbxref=GenBank:WP_000497451.1;Name=WP_000497451.1;gbkey=CDS;gene=msgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460211.1;locus_tag=C9F05_RS12400;product=virulence protein MsgA;protein_id=WP_000497451.1;transl_table=11
NZ_PYKE01000188.1	RefSeq	gene	1949	2470	.	-	.	ID=gene-C9F05_RS12405;Name=C9F05_RS12405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12405;old_locus_tag=C9F05_12765
NZ_PYKE01000188.1	Protein Homology	CDS	1949	2470	.	-	0	ID=cds-WP_001589112.1;Parent=gene-C9F05_RS12405;Dbxref=GenBank:WP_001589112.1;Name=WP_001589112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460212.1;locus_tag=C9F05_RS12405;product=RICIN domain-containing protein;protein_id=WP_001589112.1;transl_table=11
NZ_PYKE01000188.1	RefSeq	gene	2873	3085	.	-	.	ID=gene-C9F05_RS12410;Name=cspF;gbkey=Gene;gene=cspF;gene_biotype=protein_coding;locus_tag=C9F05_RS12410;old_locus_tag=C9F05_12770
NZ_PYKE01000188.1	Protein Homology	CDS	2873	3085	.	-	0	ID=cds-WP_001537306.1;Parent=gene-C9F05_RS12410;Dbxref=GenBank:WP_001537306.1;Name=WP_001537306.1;gbkey=CDS;gene=cspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460213.1;locus_tag=C9F05_RS12410;product=cold shock-like protein CspF;protein_id=WP_001537306.1;transl_table=11
NZ_PYKE01000188.1	RefSeq	gene	3217	3480	.	-	.	ID=gene-C9F05_RS12415;Name=pagD;gbkey=Gene;gene=pagD;gene_biotype=protein_coding;locus_tag=C9F05_RS12415;old_locus_tag=C9F05_12775
NZ_PYKE01000188.1	Protein Homology	CDS	3217	3480	.	-	0	ID=cds-WP_058821252.1;Parent=gene-C9F05_RS12415;Dbxref=GenBank:WP_058821252.1;Name=WP_058821252.1;gbkey=CDS;gene=pagD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460214.1;locus_tag=C9F05_RS12415;product=virulence protein PagD;protein_id=WP_058821252.1;transl_table=11
NZ_PYKE01000188.1	RefSeq	gene	4288	4845	.	+	.	ID=gene-C9F05_RS12430;Name=pagC;gbkey=Gene;gene=pagC;gene_biotype=protein_coding;locus_tag=C9F05_RS12430;old_locus_tag=C9F05_12790
NZ_PYKE01000188.1	Protein Homology	CDS	4288	4845	.	+	0	ID=cds-WP_000789471.1;Parent=gene-C9F05_RS12430;Dbxref=GenBank:WP_000789471.1;Name=WP_000789471.1;gbkey=CDS;gene=pagC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460215.1;locus_tag=C9F05_RS12430;product=virulence membrane protein PagC;protein_id=WP_000789471.1;transl_table=11
NZ_PYKE01000188.1	RefSeq	gene	5236	5312	.	+	.	ID=gene-C9F05_RS12435;Name=C9F05_RS12435;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS12435;old_locus_tag=C9F05_12795
NZ_PYKE01000188.1	tRNAscan-SE	tRNA	5236	5312	.	+	.	ID=rna-C9F05_RS12435;Parent=gene-C9F05_RS12435;anticodon=(pos:5270..5272);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS12435;product=tRNA-Arg
NZ_PYKE01000188.1	tRNAscan-SE	exon	5236	5312	.	+	.	ID=exon-C9F05_RS12435-1;Parent=rna-C9F05_RS12435;anticodon=(pos:5270..5272);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS12435;product=tRNA-Arg
##sequence-region NZ_PYKE01000243.1 1 5395
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000243.1	RefSeq	region	1	5395	.	+	.	ID=NZ_PYKE01000243.1:1..5395;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000243.1	RefSeq	gene	1	1443	.	+	.	ID=gene-C9F05_RS15680;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=C9F05_RS15680;old_locus_tag=C9F05_16115;partial=true;start_range=.,1
NZ_PYKE01000243.1	Protein Homology	CDS	1	1443	.	+	0	ID=cds-WP_135370447.1;Parent=gene-C9F05_RS15680;Dbxref=GenBank:WP_135370447.1;Name=WP_135370447.1;Ontology_term=GO:0006813,GO:0005524,GO:0008556,GO:0016020,GO:0031004;gbkey=CDS;gene=kdpB;go_component=membrane|0016020||IEA,potassium ion-transporting ATPase complex|0031004||IEA;go_function=ATP binding|0005524||IEA,P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459690.1;locus_tag=C9F05_RS15680;partial=true;product=potassium-transporting ATPase subunit KdpB;protein_id=WP_135370447.1;start_range=.,1;transl_table=11
NZ_PYKE01000243.1	RefSeq	gene	1452	2036	.	+	.	ID=gene-C9F05_RS15685;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=protein_coding;locus_tag=C9F05_RS15685;old_locus_tag=C9F05_16120
NZ_PYKE01000243.1	Protein Homology	CDS	1452	2036	.	+	0	ID=cds-WP_080167250.1;Parent=gene-C9F05_RS15685;Dbxref=GenBank:WP_080167250.1;Name=WP_080167250.1;Ontology_term=GO:0006813,GO:0008556,GO:0016020;gbkey=CDS;gene=kdpC;go_component=membrane|0016020||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459689.1;locus_tag=C9F05_RS15685;product=potassium-transporting ATPase subunit KdpC;protein_id=WP_080167250.1;transl_table=11
NZ_PYKE01000243.1	RefSeq	gene	2033	4717	.	+	.	ID=gene-C9F05_RS15690;Name=kdpD;gbkey=Gene;gene=kdpD;gene_biotype=protein_coding;locus_tag=C9F05_RS15690;old_locus_tag=C9F05_16125
NZ_PYKE01000243.1	Protein Homology	CDS	2033	4717	.	+	0	ID=cds-WP_135370448.1;Parent=gene-C9F05_RS15690;Dbxref=GenBank:WP_135370448.1;Name=WP_135370448.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=kdpD;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459688.1;locus_tag=C9F05_RS15690;product=two-component system sensor histidine kinase KdpD;protein_id=WP_135370448.1;transl_table=11
NZ_PYKE01000243.1	RefSeq	gene	4714	5391	.	+	.	ID=gene-C9F05_RS15695;Name=kdpE;gbkey=Gene;gene=kdpE;gene_biotype=protein_coding;locus_tag=C9F05_RS15695;old_locus_tag=C9F05_16130
NZ_PYKE01000243.1	Protein Homology	CDS	4714	5391	.	+	0	ID=cds-WP_000186054.1;Parent=gene-C9F05_RS15695;Dbxref=GenBank:WP_000186054.1;Name=WP_000186054.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=kdpE;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459687.1;locus_tag=C9F05_RS15695;product=two-component system response regulator KdpE;protein_id=WP_000186054.1;transl_table=11
##sequence-region NZ_PYKE01000341.1 1 5376
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000341.1	RefSeq	region	1	5376	.	+	.	ID=NZ_PYKE01000341.1:1..5376;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000341.1	RefSeq	gene	176	502	.	+	.	ID=gene-C9F05_RS23955;Name=C9F05_RS23955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23955
NZ_PYKE01000341.1	GeneMarkS-2+	CDS	176	502	.	+	0	ID=cds-WP_254866042.1;Parent=gene-C9F05_RS23955;Dbxref=GenBank:WP_254866042.1;Name=WP_254866042.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23955;product=hypothetical protein;protein_id=WP_254866042.1;transl_table=11
NZ_PYKE01000341.1	RefSeq	gene	540	773	.	+	.	ID=gene-C9F05_RS23960;Name=C9F05_RS23960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23960
NZ_PYKE01000341.1	GeneMarkS-2+	CDS	540	773	.	+	0	ID=cds-WP_255121315.1;Parent=gene-C9F05_RS23960;Dbxref=GenBank:WP_255121315.1;Name=WP_255121315.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23960;product=hypothetical protein;protein_id=WP_255121315.1;transl_table=11
NZ_PYKE01000341.1	RefSeq	gene	777	1451	.	+	.	ID=gene-C9F05_RS23090;Name=C9F05_RS23090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23090;old_locus_tag=C9F05_23685
NZ_PYKE01000341.1	Protein Homology	CDS	777	1451	.	+	0	ID=cds-WP_052932351.1;Parent=gene-C9F05_RS23090;Dbxref=GenBank:WP_052932351.1;Name=WP_052932351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001561306.1;locus_tag=C9F05_RS23090;product=TIGR03759 family integrating conjugative element protein;protein_id=WP_052932351.1;transl_table=11
NZ_PYKE01000341.1	RefSeq	gene	1430	1948	.	+	.	ID=gene-C9F05_RS23095;Name=C9F05_RS23095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23095;old_locus_tag=C9F05_23690
NZ_PYKE01000341.1	Protein Homology	CDS	1430	1948	.	+	0	ID=cds-WP_079801997.1;Parent=gene-C9F05_RS23095;Dbxref=GenBank:WP_079801997.1;Name=WP_079801997.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009654414.1;locus_tag=C9F05_RS23095;product=transglycosylase SLT domain-containing protein;protein_id=WP_079801997.1;transl_table=11
NZ_PYKE01000341.1	RefSeq	pseudogene	1945	3703	.	+	.	ID=gene-C9F05_RS23100;Name=traD;gbkey=Gene;gene=traD;gene_biotype=pseudogene;locus_tag=C9F05_RS23100;old_locus_tag=C9F05_23695;pseudo=true
NZ_PYKE01000341.1	Protein Homology	CDS	1945	3703	.	+	0	ID=cds-C9F05_RS23100;Parent=gene-C9F05_RS23100;Note=frameshifted;gbkey=CDS;gene=traD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001728513.1;locus_tag=C9F05_RS23100;product=type IV conjugative transfer system coupling protein TraD;pseudo=true;transl_table=11
NZ_PYKE01000341.1	RefSeq	gene	3700	4374	.	+	.	ID=gene-C9F05_RS23105;Name=C9F05_RS23105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23105;old_locus_tag=C9F05_23700
NZ_PYKE01000341.1	Protein Homology	CDS	3700	4374	.	+	0	ID=cds-WP_052932353.1;Parent=gene-C9F05_RS23105;Dbxref=GenBank:WP_052932353.1;Name=WP_052932353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012737290.1;locus_tag=C9F05_RS23105;product=DUF4400 domain-containing protein;protein_id=WP_052932353.1;transl_table=11
NZ_PYKE01000341.1	RefSeq	gene	4462	4866	.	+	.	ID=gene-C9F05_RS23110;Name=C9F05_RS23110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23110;old_locus_tag=C9F05_23705
NZ_PYKE01000341.1	Protein Homology	CDS	4462	4866	.	+	0	ID=cds-WP_072103758.1;Parent=gene-C9F05_RS23110;Dbxref=GenBank:WP_072103758.1;Name=WP_072103758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003836665.1;locus_tag=C9F05_RS23110;product=TIR domain-containing protein;protein_id=WP_072103758.1;transl_table=11
NZ_PYKE01000341.1	RefSeq	gene	4902	5376	.	-	.	ID=gene-C9F05_RS23115;Name=C9F05_RS23115;end_range=5376,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23115;old_locus_tag=C9F05_23710;partial=true
NZ_PYKE01000341.1	Protein Homology	CDS	4902	5376	.	-	1	ID=cds-WP_135370672.1;Parent=gene-C9F05_RS23115;Dbxref=GenBank:WP_135370672.1;Name=WP_135370672.1;end_range=5376,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033634.1;locus_tag=C9F05_RS23115;partial=true;product=SLATT domain-containing protein;protein_id=WP_135370672.1;transl_table=11
##sequence-region NZ_PYKE01000310.1 1 31473
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000310.1	RefSeq	region	1	31473	.	+	.	ID=NZ_PYKE01000310.1:1..31473;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000310.1	RefSeq	gene	94	273	.	+	.	ID=gene-C9F05_RS21030;Name=C9F05_RS21030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21030;old_locus_tag=C9F05_21610
NZ_PYKE01000310.1	Protein Homology	CDS	94	273	.	+	0	ID=cds-WP_080194042.1;Parent=gene-C9F05_RS21030;Dbxref=GenBank:WP_080194042.1;Name=WP_080194042.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460657.1;locus_tag=C9F05_RS21030;product=hypothetical protein;protein_id=WP_080194042.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	248	547	.	+	.	ID=gene-C9F05_RS21035;Name=C9F05_RS21035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21035;old_locus_tag=C9F05_21615
NZ_PYKE01000310.1	Protein Homology	CDS	248	547	.	+	0	ID=cds-WP_031607852.1;Parent=gene-C9F05_RS21035;Dbxref=GenBank:WP_031607852.1;Name=WP_031607852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460658.1;locus_tag=C9F05_RS21035;product=hypothetical protein;protein_id=WP_031607852.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	665	1453	.	+	.	ID=gene-C9F05_RS21040;Name=fabI;gbkey=Gene;gene=fabI;gene_biotype=protein_coding;locus_tag=C9F05_RS21040;old_locus_tag=C9F05_21620
NZ_PYKE01000310.1	Protein Homology	CDS	665	1453	.	+	0	ID=cds-WP_000506501.1;Parent=gene-C9F05_RS21040;Dbxref=GenBank:WP_000506501.1;Name=WP_000506501.1;gbkey=CDS;gene=fabI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126472.1;locus_tag=C9F05_RS21040;product=enoyl-ACP reductase FabI;protein_id=WP_000506501.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	pseudogene	1653	2630	.	+	.	ID=gene-C9F05_RS21045;Name=C9F05_RS21045;end_range=2630,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS21045;old_locus_tag=C9F05_21625;partial=true;pseudo=true
NZ_PYKE01000310.1	Protein Homology	CDS	1653	2630	.	+	0	ID=cds-C9F05_RS21045;Parent=gene-C9F05_RS21045;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2630,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460660.1;locus_tag=C9F05_RS21045;partial=true;product=carboxymuconolactone decarboxylase family protein;pseudo=true;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	2875	4809	.	+	.	ID=gene-C9F05_RS21050;Name=C9F05_RS21050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21050;old_locus_tag=C9F05_21630
NZ_PYKE01000310.1	Protein Homology	CDS	2875	4809	.	+	0	ID=cds-WP_000485040.1;Parent=gene-C9F05_RS21050;Dbxref=GenBank:WP_000485040.1;Name=WP_000485040.1;Ontology_term=GO:0006401,GO:0003723,GO:0008859;gbkey=CDS;go_function=RNA binding|0003723||IEA,exoribonuclease II activity|0008859||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460661.1;locus_tag=C9F05_RS21050;product=exoribonuclease II;protein_id=WP_000485040.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	5071	7053	.	+	.	ID=gene-C9F05_RS21055;Name=pdeR;gbkey=Gene;gene=pdeR;gene_biotype=protein_coding;locus_tag=C9F05_RS21055;old_locus_tag=C9F05_21640
NZ_PYKE01000310.1	Protein Homology	CDS	5071	7053	.	+	0	ID=cds-WP_024146146.1;Parent=gene-C9F05_RS21055;Dbxref=GenBank:WP_024146146.1;Name=WP_024146146.1;gbkey=CDS;gene=pdeR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460662.1;locus_tag=C9F05_RS21055;product=cyclic di-GMP phosphodiesterase;protein_id=WP_024146146.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	7175	7354	.	+	.	ID=gene-C9F05_RS21060;Name=C9F05_RS21060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21060;old_locus_tag=C9F05_21645
NZ_PYKE01000310.1	Protein Homology	CDS	7175	7354	.	+	0	ID=cds-WP_001279854.1;Parent=gene-C9F05_RS21060;Dbxref=GenBank:WP_001279854.1;Name=WP_001279854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001279854.1;locus_tag=C9F05_RS21060;product=YciZ family protein;protein_id=WP_001279854.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	7441	8193	.	+	.	ID=gene-C9F05_RS21065;Name=yciT;gbkey=Gene;gene=yciT;gene_biotype=protein_coding;gene_synonym=deoT;locus_tag=C9F05_RS21065;old_locus_tag=C9F05_21650
NZ_PYKE01000310.1	Protein Homology	CDS	7441	8193	.	+	0	ID=cds-WP_001088593.1;Parent=gene-C9F05_RS21065;Dbxref=GenBank:WP_001088593.1;Name=WP_001088593.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yciT;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460663.1;locus_tag=C9F05_RS21065;product=DNA-binding transcriptional regulator YciT;protein_id=WP_001088593.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	8452	8670	.	+	.	ID=gene-C9F05_RS21070;Name=osmB;gbkey=Gene;gene=osmB;gene_biotype=protein_coding;locus_tag=C9F05_RS21070;old_locus_tag=C9F05_21655
NZ_PYKE01000310.1	Protein Homology	CDS	8452	8670	.	+	0	ID=cds-WP_000481166.1;Parent=gene-C9F05_RS21070;Dbxref=GenBank:WP_000481166.1;Name=WP_000481166.1;gbkey=CDS;gene=osmB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460664.1;locus_tag=C9F05_RS21070;product=osmotically-inducible lipoprotein OsmB;protein_id=WP_000481166.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	8790	9116	.	-	.	ID=gene-C9F05_RS21075;Name=yciH;gbkey=Gene;gene=yciH;gene_biotype=protein_coding;locus_tag=C9F05_RS21075;old_locus_tag=C9F05_21660
NZ_PYKE01000310.1	Protein Homology	CDS	8790	9116	.	-	0	ID=cds-WP_001285199.1;Parent=gene-C9F05_RS21075;Dbxref=GenBank:WP_001285199.1;Name=WP_001285199.1;gbkey=CDS;gene=yciH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460665.1;locus_tag=C9F05_RS21075;product=stress response translation initiation inhibitor YciH;protein_id=WP_001285199.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	9116	9853	.	-	.	ID=gene-C9F05_RS21080;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=C9F05_RS21080;old_locus_tag=C9F05_21665
NZ_PYKE01000310.1	Protein Homology	CDS	9116	9853	.	-	0	ID=cds-WP_079788611.1;Parent=gene-C9F05_RS21080;Dbxref=GenBank:WP_079788611.1;Name=WP_079788611.1;Ontology_term=GO:0006207,GO:0044205,GO:0004590;gbkey=CDS;gene=pyrF;go_function=orotidine-5'-phosphate decarboxylase activity|0004590||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,'de novo' UMP biosynthetic process|0044205||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460666.1;locus_tag=C9F05_RS21080;product=orotidine-5'-phosphate decarboxylase;protein_id=WP_079788611.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	10044	11213	.	-	.	ID=gene-C9F05_RS21085;Name=lapB;gbkey=Gene;gene=lapB;gene_biotype=protein_coding;locus_tag=C9F05_RS21085;old_locus_tag=C9F05_21670
NZ_PYKE01000310.1	Protein Homology	CDS	10044	11213	.	-	0	ID=cds-WP_000891378.1;Parent=gene-C9F05_RS21085;Dbxref=GenBank:WP_000891378.1;Name=WP_000891378.1;Ontology_term=GO:0008653,GO:0005515;gbkey=CDS;gene=lapB;go_function=protein binding|0005515||IEA;go_process=lipopolysaccharide metabolic process|0008653||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000891373.1;locus_tag=C9F05_RS21085;product=lipopolysaccharide assembly protein LapB;protein_id=WP_000891378.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	11220	11528	.	-	.	ID=gene-C9F05_RS21090;Name=C9F05_RS21090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21090;old_locus_tag=C9F05_21675
NZ_PYKE01000310.1	Protein Homology	CDS	11220	11528	.	-	0	ID=cds-WP_000876301.1;Parent=gene-C9F05_RS21090;Dbxref=GenBank:WP_000876301.1;Name=WP_000876301.1;Ontology_term=GO:0008653,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=lipopolysaccharide metabolic process|0008653||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460668.1;locus_tag=C9F05_RS21090;product=LapA family protein;protein_id=WP_000876301.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	11678	12442	.	-	.	ID=gene-C9F05_RS21095;Name=pgpB;gbkey=Gene;gene=pgpB;gene_biotype=protein_coding;locus_tag=C9F05_RS21095;old_locus_tag=C9F05_21685
NZ_PYKE01000310.1	Protein Homology	CDS	11678	12442	.	-	0	ID=cds-WP_000948651.1;Parent=gene-C9F05_RS21095;Dbxref=GenBank:WP_000948651.1;Name=WP_000948651.1;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=pgpB;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460669.1;locus_tag=C9F05_RS21095;product=phosphatidylglycerophosphatase B;protein_id=WP_000948651.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	12638	13228	.	+	.	ID=gene-C9F05_RS21100;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=C9F05_RS21100;old_locus_tag=C9F05_21690
NZ_PYKE01000310.1	Protein Homology	CDS	12638	13228	.	+	0	ID=cds-WP_001176284.1;Parent=gene-C9F05_RS21100;Dbxref=GenBank:WP_001176284.1;Name=WP_001176284.1;Ontology_term=GO:0003935;gbkey=CDS;gene=ribA;go_function=GTP cyclohydrolase II activity|0003935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460670.1;locus_tag=C9F05_RS21100;product=GTP cyclohydrolase II;protein_id=WP_001176284.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	13284	15959	.	-	.	ID=gene-C9F05_RS21105;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=C9F05_RS21105;old_locus_tag=C9F05_21695
NZ_PYKE01000310.1	Protein Homology	CDS	13284	15959	.	-	0	ID=cds-WP_135370616.1;Parent=gene-C9F05_RS21105;Dbxref=GenBank:WP_135370616.1;Name=WP_135370616.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnA;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460671.1;locus_tag=C9F05_RS21105;product=aconitate hydratase AcnA;protein_id=WP_135370616.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	16142	16234	.	-	.	ID=gene-C9F05_RS23935;Name=ymiC;gbkey=Gene;gene=ymiC;gene_biotype=protein_coding;locus_tag=C9F05_RS23935
NZ_PYKE01000310.1	Protein Homology	CDS	16142	16234	.	-	0	ID=cds-WP_223156441.1;Parent=gene-C9F05_RS23935;Dbxref=GenBank:WP_223156441.1;Name=WP_223156441.1;gbkey=CDS;gene=ymiC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_226998799.1;locus_tag=C9F05_RS23935;product=small membrane protein YmiC;protein_id=WP_223156441.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	16515	16655	.	-	.	ID=gene-C9F05_RS21115;Name=C9F05_RS21115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21115;old_locus_tag=C9F05_21705
NZ_PYKE01000310.1	Protein Homology	CDS	16515	16655	.	-	0	ID=cds-WP_213083417.1;Parent=gene-C9F05_RS21115;Dbxref=GenBank:WP_213083417.1;Name=WP_213083417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588449.3;locus_tag=C9F05_RS21115;product=YmiA family putative membrane protein;protein_id=WP_213083417.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	16936	17910	.	-	.	ID=gene-C9F05_RS21120;Name=cysB;gbkey=Gene;gene=cysB;gene_biotype=protein_coding;locus_tag=C9F05_RS21120;old_locus_tag=C9F05_21710
NZ_PYKE01000310.1	Protein Homology	CDS	16936	17910	.	-	0	ID=cds-WP_023232099.1;Parent=gene-C9F05_RS21120;Dbxref=GenBank:WP_023232099.1;Name=WP_023232099.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=cysB;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012017585.1;locus_tag=C9F05_RS21120;product=HTH-type transcriptional regulator CysB;protein_id=WP_023232099.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	18321	20918	.	-	.	ID=gene-C9F05_RS21125;Name=topA;gbkey=Gene;gene=topA;gene_biotype=protein_coding;locus_tag=C9F05_RS21125;old_locus_tag=C9F05_21715
NZ_PYKE01000310.1	Protein Homology	CDS	18321	20918	.	-	0	ID=cds-WP_000513593.1;Parent=gene-C9F05_RS21125;Dbxref=GenBank:WP_000513593.1;Name=WP_000513593.1;Ontology_term=GO:0006260,GO:0006265,GO:0003677,GO:0003917,GO:0005737;gbkey=CDS;gene=topA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type I (single strand cut%2C ATP-independent) activity|0003917||IEA;go_process=DNA replication|0006260||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000513601.1;locus_tag=C9F05_RS21125;product=type I DNA topoisomerase;protein_id=WP_000513593.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	21321	21572	.	+	.	ID=gene-C9F05_RS21130;Name=C9F05_RS21130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21130;old_locus_tag=C9F05_21725
NZ_PYKE01000310.1	Protein Homology	CDS	21321	21572	.	+	0	ID=cds-WP_000548616.1;Parent=gene-C9F05_RS21130;Dbxref=GenBank:WP_000548616.1;Name=WP_000548616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460674.1;locus_tag=C9F05_RS21130;product=YciN family protein;protein_id=WP_000548616.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	21614	22660	.	-	.	ID=gene-C9F05_RS21135;Name=sohB;gbkey=Gene;gene=sohB;gene_biotype=protein_coding;locus_tag=C9F05_RS21135;old_locus_tag=C9F05_21730
NZ_PYKE01000310.1	Protein Homology	CDS	21614	22660	.	-	0	ID=cds-WP_000422082.1;Parent=gene-C9F05_RS21135;Dbxref=GenBank:WP_000422082.1;Name=WP_000422082.1;Ontology_term=GO:0006508,GO:0008233;gbkey=CDS;gene=sohB;go_function=peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460675.1;locus_tag=C9F05_RS21135;product=protease SohB;protein_id=WP_000422082.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	22898	23659	.	+	.	ID=gene-C9F05_RS21140;Name=C9F05_RS21140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21140;old_locus_tag=C9F05_21735
NZ_PYKE01000310.1	Protein Homology	CDS	22898	23659	.	+	0	ID=cds-WP_000559310.1;Parent=gene-C9F05_RS21140;Dbxref=GenBank:WP_000559310.1;Name=WP_000559310.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460676.1;locus_tag=C9F05_RS21140;product=YciK family oxidoreductase;protein_id=WP_000559310.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	23656	24246	.	+	.	ID=gene-C9F05_RS21145;Name=cobO;gbkey=Gene;gene=cobO;gene_biotype=protein_coding;locus_tag=C9F05_RS21145;old_locus_tag=C9F05_21740
NZ_PYKE01000310.1	Protein Homology	CDS	23656	24246	.	+	0	ID=cds-WP_001278856.1;Parent=gene-C9F05_RS21145;Dbxref=GenBank:WP_001278856.1;Name=WP_001278856.1;Ontology_term=GO:0009236,GO:0008817;gbkey=CDS;gene=cobO;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460677.1;locus_tag=C9F05_RS21145;product=cob(I)yrinic acid a%2Cc-diamide adenosyltransferase;protein_id=WP_001278856.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	24333	25208	.	-	.	ID=gene-C9F05_RS21150;Name=rluB;gbkey=Gene;gene=rluB;gene_biotype=protein_coding;locus_tag=C9F05_RS21150;old_locus_tag=C9F05_21745
NZ_PYKE01000310.1	Protein Homology	CDS	24333	25208	.	-	0	ID=cds-WP_001291233.1;Parent=gene-C9F05_RS21150;Dbxref=GenBank:WP_001291233.1;Name=WP_001291233.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460678.1;locus_tag=C9F05_RS21150;product=23S rRNA pseudouridine(2605) synthase RluB;protein_id=WP_001291233.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	25309	25929	.	-	.	ID=gene-C9F05_RS21155;Name=C9F05_RS21155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21155;old_locus_tag=C9F05_21750
NZ_PYKE01000310.1	Protein Homology	CDS	25309	25929	.	-	0	ID=cds-WP_135370617.1;Parent=gene-C9F05_RS21155;Dbxref=GenBank:WP_135370617.1;Name=WP_135370617.1;Ontology_term=GO:0006400,GO:0003725,GO:0061710;gbkey=CDS;go_function=double-stranded RNA binding|0003725||IEA,L-threonylcarbamoyladenylate synthase|0061710||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126434.1;locus_tag=C9F05_RS21155;product=L-threonylcarbamoyladenylate synthase;protein_id=WP_135370617.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	25937	26818	.	-	.	ID=gene-C9F05_RS21160;Name=rnm;gbkey=Gene;gene=rnm;gene_biotype=protein_coding;gene_synonym=trpH,yciV;locus_tag=C9F05_RS21160;old_locus_tag=C9F05_21755
NZ_PYKE01000310.1	Protein Homology	CDS	25937	26818	.	-	0	ID=cds-WP_080170023.1;Parent=gene-C9F05_RS21160;Dbxref=GenBank:WP_080170023.1;Name=WP_080170023.1;Ontology_term=GO:0006364,GO:0004534,GO:0035312,GO:0097657;gbkey=CDS;gene=rnm;go_function=5'-3' RNA exonuclease activity|0004534||IEA,5'-3' DNA exonuclease activity|0035312||IEA,3'%2C5'-nucleotide bisphosphate phosphatase activity|0097657||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460680.1;locus_tag=C9F05_RS21160;product=RNase RNM;protein_id=WP_080170023.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	26940	26984	.	+	.	ID=gene-C9F05_RS21165;Name=trpL;gbkey=Gene;gene=trpL;gene_biotype=protein_coding;locus_tag=C9F05_RS21165
NZ_PYKE01000310.1	Protein Homology	CDS	26940	26984	.	+	0	ID=cds-WP_217810213.1;Parent=gene-C9F05_RS21165;Dbxref=GenBank:WP_217810213.1;Name=WP_217810213.1;gbkey=CDS;gene=trpL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448140.1;locus_tag=C9F05_RS21165;product=trp operon leader peptide;protein_id=WP_217810213.1;transl_table=11
NZ_PYKE01000310.1	cmsearch	sequence_feature	26961	27056	.	+	.	ID=id-NZ_PYKE01000310.1:26961..27056;Dbxref=RFAM:RF00513;Note=Trp leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYKE01000310.1	RefSeq	gene	27079	28641	.	+	.	ID=gene-C9F05_RS21170;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;locus_tag=C9F05_RS21170;old_locus_tag=C9F05_21760
NZ_PYKE01000310.1	Protein Homology	CDS	27079	28641	.	+	0	ID=cds-WP_001194376.1;Parent=gene-C9F05_RS21170;Dbxref=GenBank:WP_001194376.1;Name=WP_001194376.1;Ontology_term=GO:0000162,GO:0004049;gbkey=CDS;gene=trpE;go_function=anthranilate synthase activity|0004049||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460682.1;locus_tag=C9F05_RS21170;product=anthranilate synthase component I;protein_id=WP_001194376.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	28641	30236	.	+	.	ID=gene-C9F05_RS21175;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=C9F05_RS21175;old_locus_tag=C9F05_21765
NZ_PYKE01000310.1	Protein Homology	CDS	28641	30236	.	+	0	ID=cds-WP_000763489.1;Parent=gene-C9F05_RS21175;Dbxref=GenBank:WP_000763489.1;Name=WP_000763489.1;Ontology_term=GO:0000162,GO:0004048;gbkey=CDS;gene=trpD;go_function=anthranilate phosphoribosyltransferase activity|0004048||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008784940.1;locus_tag=C9F05_RS21175;product=bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD;protein_id=WP_000763489.1;transl_table=11
NZ_PYKE01000310.1	RefSeq	gene	30240	31473	.	+	.	ID=gene-C9F05_RS21180;Name=trpCF;end_range=31473,.;gbkey=Gene;gene=trpCF;gene_biotype=protein_coding;locus_tag=C9F05_RS21180;old_locus_tag=C9F05_21770;partial=true
NZ_PYKE01000310.1	Protein Homology	CDS	30240	31473	.	+	0	ID=cds-WP_135370618.1;Parent=gene-C9F05_RS21180;Dbxref=GenBank:WP_135370618.1;Name=WP_135370618.1;Ontology_term=GO:0006568,GO:0004425,GO:0004640;end_range=31473,.;gbkey=CDS;gene=trpCF;go_function=indole-3-glycerol-phosphate synthase activity|0004425||IEA,phosphoribosylanthranilate isomerase activity|0004640||IEA;go_process=L-tryptophan metabolic process|0006568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460684.1;locus_tag=C9F05_RS21180;partial=true;product=bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF;protein_id=WP_135370618.1;transl_table=11
##sequence-region NZ_PYKE01000319.1 1 5139
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000319.1	RefSeq	region	1	5139	.	+	.	ID=NZ_PYKE01000319.1:1..5139;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000319.1	RefSeq	gene	5	1009	.	-	.	ID=gene-C9F05_RS21640;Name=cra;gbkey=Gene;gene=cra;gene_biotype=protein_coding;locus_tag=C9F05_RS21640;old_locus_tag=C9F05_22225
NZ_PYKE01000319.1	Protein Homology	CDS	5	1009	.	-	0	ID=cds-WP_000762406.1;Parent=gene-C9F05_RS21640;Dbxref=GenBank:WP_000762406.1;Name=WP_000762406.1;Ontology_term=GO:0006355,GO:0009750,GO:0003677;gbkey=CDS;gene=cra;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to fructose|0009750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459123.1;locus_tag=C9F05_RS21640;product=catabolite repressor/activator;protein_id=WP_000762406.1;transl_table=11
NZ_PYKE01000319.1	RefSeq	gene	1294	1785	.	-	.	ID=gene-C9F05_RS21645;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=C9F05_RS21645;old_locus_tag=C9F05_22230
NZ_PYKE01000319.1	Protein Homology	CDS	1294	1785	.	-	0	ID=cds-WP_001563086.1;Parent=gene-C9F05_RS21645;Dbxref=GenBank:WP_001563086.1;Name=WP_001563086.1;Ontology_term=GO:0009082,GO:1990610;gbkey=CDS;gene=ilvN;go_function=acetolactate synthase regulator activity|1990610||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001563086.1;locus_tag=C9F05_RS21645;product=acetolactate synthase small subunit;protein_id=WP_001563086.1;transl_table=11
NZ_PYKE01000319.1	RefSeq	gene	1788	3512	.	-	.	ID=gene-C9F05_RS21650;Name=ilvI;gbkey=Gene;gene=ilvI;gene_biotype=protein_coding;locus_tag=C9F05_RS21650;old_locus_tag=C9F05_22235
NZ_PYKE01000319.1	Protein Homology	CDS	1788	3512	.	-	0	ID=cds-WP_001748923.1;Parent=gene-C9F05_RS21650;Dbxref=GenBank:WP_001748923.1;Name=WP_001748923.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvI;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020079613.1;locus_tag=C9F05_RS21650;product=acetolactate synthase 3 large subunit;protein_id=WP_001748923.1;transl_table=11
NZ_PYKE01000319.1	RefSeq	gene	3834	4778	.	-	.	ID=gene-C9F05_RS21655;Name=leuO;gbkey=Gene;gene=leuO;gene_biotype=protein_coding;locus_tag=C9F05_RS21655;old_locus_tag=C9F05_22240
NZ_PYKE01000319.1	Protein Homology	CDS	3834	4778	.	-	0	ID=cds-WP_001115420.1;Parent=gene-C9F05_RS21655;Dbxref=GenBank:WP_001115420.1;Name=WP_001115420.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=leuO;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459120.1;locus_tag=C9F05_RS21655;product=transcriptional regulator LeuO;protein_id=WP_001115420.1;transl_table=11
##sequence-region NZ_PYKE01000205.1 1 5043
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000205.1	RefSeq	region	1	5043	.	+	.	ID=NZ_PYKE01000205.1:1..5043;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000205.1	RefSeq	gene	35	2470	.	-	.	ID=gene-C9F05_RS13370;Name=ynfF;gbkey=Gene;gene=ynfF;gene_biotype=protein_coding;locus_tag=C9F05_RS13370;old_locus_tag=C9F05_13755
NZ_PYKE01000205.1	Protein Homology	CDS	35	2470	.	-	0	ID=cds-WP_135370357.1;Parent=gene-C9F05_RS13370;Dbxref=GenBank:WP_135370357.1;Name=WP_135370357.1;gbkey=CDS;gene=ynfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460458.1;locus_tag=C9F05_RS13370;product=selenate/tellurate reductase subunit YnfF;protein_id=WP_135370357.1;transl_table=11
NZ_PYKE01000205.1	RefSeq	gene	2569	5007	.	-	.	ID=gene-C9F05_RS13375;Name=ynfE;gbkey=Gene;gene=ynfE;gene_biotype=protein_coding;locus_tag=C9F05_RS13375;old_locus_tag=C9F05_13760
NZ_PYKE01000205.1	Protein Homology	CDS	2569	5007	.	-	0	ID=cds-WP_076735658.1;Parent=gene-C9F05_RS13375;Dbxref=GenBank:WP_076735658.1;Name=WP_076735658.1;gbkey=CDS;gene=ynfE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006788576.1;locus_tag=C9F05_RS13375;product=selenate/tellurate reductase subunit YnfE;protein_id=WP_076735658.1;transl_table=11
##sequence-region NZ_PYKE01000309.1 1 31340
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000309.1	RefSeq	region	1	31340	.	+	.	ID=NZ_PYKE01000309.1:1..31340;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000309.1	RefSeq	pseudogene	1	328	.	-	.	ID=gene-C9F05_RS20800;Name=C9F05_RS20800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS20800;old_locus_tag=C9F05_21380;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000309.1	Protein Homology	CDS	1	328	.	-	0	ID=cds-C9F05_RS20800;Parent=gene-C9F05_RS20800;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461522.1;locus_tag=C9F05_RS20800;partial=true;product=tail fiber assembly protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	318	1142	.	-	.	ID=gene-C9F05_RS20805;Name=C9F05_RS20805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20805;old_locus_tag=C9F05_21385
NZ_PYKE01000309.1	Protein Homology	CDS	318	1142	.	-	0	ID=cds-WP_079942632.1;Parent=gene-C9F05_RS20805;Dbxref=GenBank:WP_079942632.1;Name=WP_079942632.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461523.1;locus_tag=C9F05_RS20805;product=macro domain-containing protein;protein_id=WP_079942632.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	pseudogene	1139	2011	.	-	.	ID=gene-C9F05_RS23910;Name=C9F05_RS23910;end_range=2011,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23910;partial=true;pseudo=true
NZ_PYKE01000309.1	Protein Homology	CDS	1139	2011	.	-	0	ID=cds-C9F05_RS23910;Parent=gene-C9F05_RS23910;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2011,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461524.1;locus_tag=C9F05_RS23910;partial=true;product=phage tail protein;pseudo=true;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	2580	3182	.	-	.	ID=gene-C9F05_RS20815;Name=C9F05_RS20815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20815;old_locus_tag=C9F05_21395
NZ_PYKE01000309.1	Protein Homology	CDS	2580	3182	.	-	0	ID=cds-WP_001181748.1;Parent=gene-C9F05_RS20815;Dbxref=GenBank:WP_001181748.1;Name=WP_001181748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001181748.1;locus_tag=C9F05_RS20815;product=DUF2612 domain-containing protein;protein_id=WP_001181748.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	3184	4425	.	-	.	ID=gene-C9F05_RS20820;Name=C9F05_RS20820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20820;old_locus_tag=C9F05_21400
NZ_PYKE01000309.1	Protein Homology	CDS	3184	4425	.	-	0	ID=cds-WP_023257605.1;Parent=gene-C9F05_RS20820;Dbxref=GenBank:WP_023257605.1;Name=WP_023257605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748481.1;locus_tag=C9F05_RS20820;product=baseplate J/gp47 family protein;protein_id=WP_023257605.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	4422	4778	.	-	.	ID=gene-C9F05_RS20825;Name=C9F05_RS20825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20825;old_locus_tag=C9F05_21405
NZ_PYKE01000309.1	Protein Homology	CDS	4422	4778	.	-	0	ID=cds-WP_135370604.1;Parent=gene-C9F05_RS20825;Dbxref=GenBank:WP_135370604.1;Name=WP_135370604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001191864.1;locus_tag=C9F05_RS20825;product=hypothetical protein;protein_id=WP_135370604.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	4791	5468	.	-	.	ID=gene-C9F05_RS20830;Name=C9F05_RS20830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20830;old_locus_tag=C9F05_21410
NZ_PYKE01000309.1	Protein Homology	CDS	4791	5468	.	-	0	ID=cds-WP_023257603.1;Parent=gene-C9F05_RS20830;Dbxref=GenBank:WP_023257603.1;Name=WP_023257603.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001534334.1;locus_tag=C9F05_RS20830;product=Gp138 family membrane-puncturing spike protein;protein_id=WP_023257603.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	5449	6318	.	-	.	ID=gene-C9F05_RS20835;Name=C9F05_RS20835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20835;old_locus_tag=C9F05_21415
NZ_PYKE01000309.1	Protein Homology	CDS	5449	6318	.	-	0	ID=cds-WP_000122818.1;Parent=gene-C9F05_RS20835;Dbxref=GenBank:WP_000122818.1;Name=WP_000122818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000122181.1;locus_tag=C9F05_RS20835;product=baseplate hub protein;protein_id=WP_000122818.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	6315	6617	.	-	.	ID=gene-C9F05_RS20840;Name=C9F05_RS20840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20840;old_locus_tag=C9F05_21420
NZ_PYKE01000309.1	Protein Homology	CDS	6315	6617	.	-	0	ID=cds-WP_000890115.1;Parent=gene-C9F05_RS20840;Dbxref=GenBank:WP_000890115.1;Name=WP_000890115.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001534376.1;locus_tag=C9F05_RS20840;product=phage baseplate plug family protein;protein_id=WP_000890115.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	6617	7327	.	-	.	ID=gene-C9F05_RS20845;Name=C9F05_RS20845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20845;old_locus_tag=C9F05_21425
NZ_PYKE01000309.1	Protein Homology	CDS	6617	7327	.	-	0	ID=cds-WP_001525483.1;Parent=gene-C9F05_RS20845;Dbxref=GenBank:WP_001525483.1;Name=WP_001525483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000010340.1;locus_tag=C9F05_RS20845;product=phage baseplate protein;protein_id=WP_001525483.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	7324	9495	.	-	.	ID=gene-C9F05_RS20850;Name=C9F05_RS20850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20850;old_locus_tag=C9F05_21430
NZ_PYKE01000309.1	Protein Homology	CDS	7324	9495	.	-	0	ID=cds-WP_135370605.1;Parent=gene-C9F05_RS20850;Dbxref=GenBank:WP_135370605.1;Name=WP_135370605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000741777.1;locus_tag=C9F05_RS20850;product=transglycosylase SLT domain-containing protein;protein_id=WP_135370605.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	9479	9661	.	-	.	ID=gene-C9F05_RS20855;Name=C9F05_RS20855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20855;old_locus_tag=C9F05_21435
NZ_PYKE01000309.1	Protein Homology	CDS	9479	9661	.	-	0	ID=cds-WP_000228830.1;Parent=gene-C9F05_RS20855;Dbxref=GenBank:WP_000228830.1;Name=WP_000228830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000228830.1;locus_tag=C9F05_RS20855;product=hypothetical protein;protein_id=WP_000228830.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	9703	10107	.	-	.	ID=gene-C9F05_RS20860;Name=C9F05_RS20860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20860;old_locus_tag=C9F05_21440
NZ_PYKE01000309.1	Protein Homology	CDS	9703	10107	.	-	0	ID=cds-WP_000101348.1;Parent=gene-C9F05_RS20860;Dbxref=GenBank:WP_000101348.1;Name=WP_000101348.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000101348.1;locus_tag=C9F05_RS20860;product=hypothetical protein;protein_id=WP_000101348.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	10107	10553	.	-	.	ID=gene-C9F05_RS20865;Name=C9F05_RS20865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20865;old_locus_tag=C9F05_21445
NZ_PYKE01000309.1	Protein Homology	CDS	10107	10553	.	-	0	ID=cds-WP_000016414.1;Parent=gene-C9F05_RS20865;Dbxref=GenBank:WP_000016414.1;Name=WP_000016414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000016417.1;locus_tag=C9F05_RS20865;product=phage tail fiber protein;protein_id=WP_000016414.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	10554	12038	.	-	.	ID=gene-C9F05_RS20870;Name=C9F05_RS20870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20870;old_locus_tag=C9F05_21450
NZ_PYKE01000309.1	Protein Homology	CDS	10554	12038	.	-	0	ID=cds-WP_023257599.1;Parent=gene-C9F05_RS20870;Dbxref=GenBank:WP_023257599.1;Name=WP_023257599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748488.1;locus_tag=C9F05_RS20870;product=DUF3383 domain-containing protein;protein_id=WP_023257599.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	12019	12564	.	-	.	ID=gene-C9F05_RS20875;Name=C9F05_RS20875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20875;old_locus_tag=C9F05_21455
NZ_PYKE01000309.1	Protein Homology	CDS	12019	12564	.	-	0	ID=cds-WP_000094504.1;Parent=gene-C9F05_RS20875;Dbxref=GenBank:WP_000094504.1;Name=WP_000094504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001525438.1;locus_tag=C9F05_RS20875;product=phage neck terminator protein;protein_id=WP_000094504.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	12549	12914	.	-	.	ID=gene-C9F05_RS20880;Name=C9F05_RS20880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20880;old_locus_tag=C9F05_21460
NZ_PYKE01000309.1	Protein Homology	CDS	12549	12914	.	-	0	ID=cds-WP_047598851.1;Parent=gene-C9F05_RS20880;Dbxref=GenBank:WP_047598851.1;Name=WP_047598851.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748490.1;locus_tag=C9F05_RS20880;product=hypothetical protein;protein_id=WP_047598851.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	12911	13495	.	-	.	ID=gene-C9F05_RS20885;Name=C9F05_RS20885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20885;old_locus_tag=C9F05_21465
NZ_PYKE01000309.1	Protein Homology	CDS	12911	13495	.	-	0	ID=cds-WP_001748491.1;Parent=gene-C9F05_RS20885;Dbxref=GenBank:WP_001748491.1;Name=WP_001748491.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000247610.1;locus_tag=C9F05_RS20885;product=hypothetical protein;protein_id=WP_001748491.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	13489	13944	.	-	.	ID=gene-C9F05_RS20890;Name=C9F05_RS20890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20890;old_locus_tag=C9F05_21470
NZ_PYKE01000309.1	Protein Homology	CDS	13489	13944	.	-	0	ID=cds-WP_001748492.1;Parent=gene-C9F05_RS20890;Dbxref=GenBank:WP_001748492.1;Name=WP_001748492.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000537613.1;locus_tag=C9F05_RS20890;product=DUF4054 domain-containing protein;protein_id=WP_001748492.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	13951	14298	.	-	.	ID=gene-C9F05_RS20895;Name=C9F05_RS20895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20895;old_locus_tag=C9F05_21475
NZ_PYKE01000309.1	Protein Homology	CDS	13951	14298	.	-	0	ID=cds-WP_000829560.1;Parent=gene-C9F05_RS20895;Dbxref=GenBank:WP_000829560.1;Name=WP_000829560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000829561.1;locus_tag=C9F05_RS20895;product=hypothetical protein;protein_id=WP_000829560.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	14302	15330	.	-	.	ID=gene-C9F05_RS20900;Name=C9F05_RS20900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20900;old_locus_tag=C9F05_21480
NZ_PYKE01000309.1	Protein Homology	CDS	14302	15330	.	-	0	ID=cds-WP_135370606.1;Parent=gene-C9F05_RS20900;Dbxref=GenBank:WP_135370606.1;Name=WP_135370606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001031907.1;locus_tag=C9F05_RS20900;product=DUF2184 domain-containing protein;protein_id=WP_135370606.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	15330	15812	.	-	.	ID=gene-C9F05_RS20905;Name=C9F05_RS20905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20905;old_locus_tag=C9F05_21485
NZ_PYKE01000309.1	Protein Homology	CDS	15330	15812	.	-	0	ID=cds-WP_058111761.1;Parent=gene-C9F05_RS20905;Dbxref=GenBank:WP_058111761.1;Name=WP_058111761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001091400.1;locus_tag=C9F05_RS20905;product=structural cement protein Gp24;protein_id=WP_058111761.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	15814	17160	.	-	.	ID=gene-C9F05_RS20910;Name=C9F05_RS20910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20910;old_locus_tag=C9F05_21490
NZ_PYKE01000309.1	Protein Homology	CDS	15814	17160	.	-	0	ID=cds-WP_135370607.1;Parent=gene-C9F05_RS20910;Dbxref=GenBank:WP_135370607.1;Name=WP_135370607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748494.1;locus_tag=C9F05_RS20910;product=DUF2213 domain-containing protein;protein_id=WP_135370607.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	17157	17846	.	-	.	ID=gene-C9F05_RS20915;Name=C9F05_RS20915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20915;old_locus_tag=C9F05_21495
NZ_PYKE01000309.1	Protein Homology	CDS	17157	17846	.	-	0	ID=cds-WP_057519928.1;Parent=gene-C9F05_RS20915;Dbxref=GenBank:WP_057519928.1;Name=WP_057519928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000552018.1;locus_tag=C9F05_RS20915;product=phage head morphogenesis protein;protein_id=WP_057519928.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	17887	19407	.	-	.	ID=gene-C9F05_RS20920;Name=C9F05_RS20920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20920;old_locus_tag=C9F05_21500
NZ_PYKE01000309.1	Protein Homology	CDS	17887	19407	.	-	0	ID=cds-WP_135370608.1;Parent=gene-C9F05_RS20920;Dbxref=GenBank:WP_135370608.1;Name=WP_135370608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001534366.1;locus_tag=C9F05_RS20920;product=DUF1073 domain-containing protein;protein_id=WP_135370608.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	19407	21026	.	-	.	ID=gene-C9F05_RS20925;Name=C9F05_RS20925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20925;old_locus_tag=C9F05_21505
NZ_PYKE01000309.1	Protein Homology	CDS	19407	21026	.	-	0	ID=cds-WP_135370609.1;Parent=gene-C9F05_RS20925;Dbxref=GenBank:WP_135370609.1;Name=WP_135370609.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001130781.1;locus_tag=C9F05_RS20925;product=TerL protein;protein_id=WP_135370609.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	21029	21658	.	-	.	ID=gene-C9F05_RS20930;Name=C9F05_RS20930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20930;old_locus_tag=C9F05_21510
NZ_PYKE01000309.1	Protein Homology	CDS	21029	21658	.	-	0	ID=cds-WP_023257591.1;Parent=gene-C9F05_RS20930;Dbxref=GenBank:WP_023257591.1;Name=WP_023257591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001118130.1;locus_tag=C9F05_RS20930;product=hypothetical protein;protein_id=WP_023257591.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	21729	21962	.	-	.	ID=gene-C9F05_RS20935;Name=C9F05_RS20935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20935;old_locus_tag=C9F05_21515
NZ_PYKE01000309.1	Protein Homology	CDS	21729	21962	.	-	0	ID=cds-WP_016716098.1;Parent=gene-C9F05_RS20935;Dbxref=GenBank:WP_016716098.1;Name=WP_016716098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000705471.1;locus_tag=C9F05_RS20935;product=DUF826 domain-containing protein;protein_id=WP_016716098.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	22137	22601	.	-	.	ID=gene-C9F05_RS20940;Name=C9F05_RS20940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20940;old_locus_tag=C9F05_21520
NZ_PYKE01000309.1	Protein Homology	CDS	22137	22601	.	-	0	ID=cds-WP_135370610.1;Parent=gene-C9F05_RS20940;Dbxref=GenBank:WP_135370610.1;Name=WP_135370610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001672757.1;locus_tag=C9F05_RS20940;product=lysis protein;protein_id=WP_135370610.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	22702	23241	.	-	.	ID=gene-C9F05_RS20945;Name=C9F05_RS20945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20945;old_locus_tag=C9F05_21525
NZ_PYKE01000309.1	Protein Homology	CDS	22702	23241	.	-	0	ID=cds-WP_001534313.1;Parent=gene-C9F05_RS20945;Dbxref=GenBank:WP_001534313.1;Name=WP_001534313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001525444.1;locus_tag=C9F05_RS20945;product=lysozyme;protein_id=WP_001534313.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	23219	23521	.	-	.	ID=gene-C9F05_RS20950;Name=C9F05_RS20950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20950;old_locus_tag=C9F05_21530
NZ_PYKE01000309.1	Protein Homology	CDS	23219	23521	.	-	0	ID=cds-WP_001525456.1;Parent=gene-C9F05_RS20950;Dbxref=GenBank:WP_001525456.1;Name=WP_001525456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001674576.1;locus_tag=C9F05_RS20950;product=HP1 family phage holin;protein_id=WP_001525456.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	23671	24078	.	-	.	ID=gene-C9F05_RS20955;Name=C9F05_RS20955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20955;old_locus_tag=C9F05_21535
NZ_PYKE01000309.1	Protein Homology	CDS	23671	24078	.	-	0	ID=cds-WP_001270289.1;Parent=gene-C9F05_RS20955;Dbxref=GenBank:WP_001270289.1;Name=WP_001270289.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001270289.1;locus_tag=C9F05_RS20955;product=type II toxin-antitoxin system HicB family antitoxin;protein_id=WP_001270289.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	24129	24305	.	-	.	ID=gene-C9F05_RS20960;Name=C9F05_RS20960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20960;old_locus_tag=C9F05_21540
NZ_PYKE01000309.1	Protein Homology	CDS	24129	24305	.	-	0	ID=cds-WP_079982050.1;Parent=gene-C9F05_RS20960;Dbxref=GenBank:WP_079982050.1;Name=WP_079982050.1;Ontology_term=GO:0003729;gbkey=CDS;go_function=mRNA binding|0003729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000813792.1;locus_tag=C9F05_RS20960;product=type II toxin-antitoxin system HicA family toxin;protein_id=WP_079982050.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	24512	25048	.	-	.	ID=gene-C9F05_RS20965;Name=C9F05_RS20965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20965;old_locus_tag=C9F05_21545
NZ_PYKE01000309.1	Protein Homology	CDS	24512	25048	.	-	0	ID=cds-WP_000640171.1;Parent=gene-C9F05_RS20965;Dbxref=GenBank:WP_000640171.1;Name=WP_000640171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000640171.1;locus_tag=C9F05_RS20965;product=DUF1133 family protein;protein_id=WP_000640171.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	25045	25326	.	-	.	ID=gene-C9F05_RS20970;Name=C9F05_RS20970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20970;old_locus_tag=C9F05_21550
NZ_PYKE01000309.1	Protein Homology	CDS	25045	25326	.	-	0	ID=cds-WP_000861020.1;Parent=gene-C9F05_RS20970;Dbxref=GenBank:WP_000861020.1;Name=WP_000861020.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001028995.1;locus_tag=C9F05_RS20970;product=DUF1364 family protein;protein_id=WP_000861020.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	25323	25517	.	-	.	ID=gene-C9F05_RS23915;Name=C9F05_RS23915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23915;old_locus_tag=C9F05_21555
NZ_PYKE01000309.1	Protein Homology	CDS	25323	25517	.	-	0	ID=cds-WP_024136025.1;Parent=gene-C9F05_RS23915;Dbxref=GenBank:WP_024136025.1;Name=WP_024136025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000784711.1;locus_tag=C9F05_RS23915;product=hypothetical protein;protein_id=WP_024136025.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	25514	25951	.	-	.	ID=gene-C9F05_RS20980;Name=C9F05_RS20980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20980;old_locus_tag=C9F05_21560
NZ_PYKE01000309.1	Protein Homology	CDS	25514	25951	.	-	0	ID=cds-WP_000023105.1;Parent=gene-C9F05_RS20980;Dbxref=GenBank:WP_000023105.1;Name=WP_000023105.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000023105.1;locus_tag=C9F05_RS20980;product=recombination protein NinB;protein_id=WP_000023105.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	pseudogene	25981	26061	.	-	.	ID=gene-C9F05_RS23920;Name=C9F05_RS23920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23920;partial=true;pseudo=true;start_range=.,25981
NZ_PYKE01000309.1	Protein Homology	CDS	25981	26061	.	-	0	ID=cds-C9F05_RS23920;Parent=gene-C9F05_RS23920;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309983.1;locus_tag=C9F05_RS23920;partial=true;product=DUF1367 family protein;pseudo=true;start_range=.,25981;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	26528	26683	.	-	.	ID=gene-C9F05_RS20985;Name=C9F05_RS20985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20985;old_locus_tag=C9F05_21565
NZ_PYKE01000309.1	Protein Homology	CDS	26528	26683	.	-	0	ID=cds-WP_001597144.1;Parent=gene-C9F05_RS20985;Dbxref=GenBank:WP_001597144.1;Name=WP_001597144.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416080.1;locus_tag=C9F05_RS20985;product=Hok/Gef family protein;protein_id=WP_001597144.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	26887	27159	.	-	.	ID=gene-C9F05_RS20990;Name=C9F05_RS20990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20990;old_locus_tag=C9F05_21570
NZ_PYKE01000309.1	Protein Homology	CDS	26887	27159	.	-	0	ID=cds-WP_135370611.1;Parent=gene-C9F05_RS20990;Dbxref=GenBank:WP_135370611.1;Name=WP_135370611.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000687974.1;locus_tag=C9F05_RS20990;product=hypothetical protein;protein_id=WP_135370611.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	27156	27551	.	-	.	ID=gene-C9F05_RS20995;Name=C9F05_RS20995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20995;old_locus_tag=C9F05_21575
NZ_PYKE01000309.1	Protein Homology	CDS	27156	27551	.	-	0	ID=cds-WP_135370612.1;Parent=gene-C9F05_RS20995;Dbxref=GenBank:WP_135370612.1;Name=WP_135370612.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000089414.1;locus_tag=C9F05_RS20995;product=DUF977 family protein;protein_id=WP_135370612.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	27569	28321	.	-	.	ID=gene-C9F05_RS21000;Name=C9F05_RS21000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21000;old_locus_tag=C9F05_21580
NZ_PYKE01000309.1	Protein Homology	CDS	27569	28321	.	-	0	ID=cds-WP_082329189.1;Parent=gene-C9F05_RS21000;Dbxref=GenBank:WP_082329189.1;Name=WP_082329189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707241.4;locus_tag=C9F05_RS21000;product=ATP-binding protein;protein_id=WP_082329189.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	pseudogene	28747	29176	.	-	.	ID=gene-C9F05_RS24205;Name=C9F05_RS24205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24205;partial=true;pseudo=true;start_range=.,28747
NZ_PYKE01000309.1	Protein Homology	CDS	28747	29176	.	-	0	ID=cds-C9F05_RS24205;Parent=gene-C9F05_RS24205;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706798.1;locus_tag=C9F05_RS24205;partial=true;product=hypothetical protein;pseudo=true;start_range=.,28747;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	29410	29796	.	+	.	ID=gene-C9F05_RS24085;Name=C9F05_RS24085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24085;old_locus_tag=C9F05_21590
NZ_PYKE01000309.1	Protein Homology	CDS	29410	29796	.	+	0	ID=cds-WP_369597861.1;Parent=gene-C9F05_RS24085;Dbxref=GenBank:WP_369597861.1;Name=WP_369597861.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033230.2;locus_tag=C9F05_RS24085;product=ECs1072 family phage-associated protein;protein_id=WP_369597861.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	30015	30512	.	-	.	ID=gene-C9F05_RS21015;Name=C9F05_RS21015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21015;old_locus_tag=C9F05_21595
NZ_PYKE01000309.1	Protein Homology	CDS	30015	30512	.	-	0	ID=cds-WP_135370614.1;Parent=gene-C9F05_RS21015;Dbxref=GenBank:WP_135370614.1;Name=WP_135370614.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001533160.1;locus_tag=C9F05_RS21015;product=hypothetical protein;protein_id=WP_135370614.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	30499	30780	.	-	.	ID=gene-C9F05_RS21020;Name=C9F05_RS21020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS21020;old_locus_tag=C9F05_21600
NZ_PYKE01000309.1	Protein Homology	CDS	30499	30780	.	-	0	ID=cds-WP_080204561.1;Parent=gene-C9F05_RS21020;Dbxref=GenBank:WP_080204561.1;Name=WP_080204561.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027273.6;locus_tag=C9F05_RS21020;product=transcriptional regulator;protein_id=WP_080204561.1;transl_table=11
NZ_PYKE01000309.1	RefSeq	gene	30879	31319	.	+	.	ID=gene-C9F05_RS23930;Name=C9F05_RS23930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23930
NZ_PYKE01000309.1	Protein Homology	CDS	30879	31319	.	+	0	ID=cds-WP_080204562.1;Parent=gene-C9F05_RS23930;Dbxref=GenBank:WP_080204562.1;Name=WP_080204562.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF013540.6;locus_tag=C9F05_RS23930;product=helix-turn-helix transcriptional regulator;protein_id=WP_080204562.1;transl_table=11
##sequence-region NZ_PYKE01000124.1 1 5028
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000124.1	RefSeq	region	1	5028	.	+	.	ID=NZ_PYKE01000124.1:1..5028;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000124.1	RefSeq	gene	117	1487	.	+	.	ID=gene-C9F05_RS08975;Name=C9F05_RS08975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08975;old_locus_tag=C9F05_09205
NZ_PYKE01000124.1	Protein Homology	CDS	117	1487	.	+	0	ID=cds-WP_000645137.1;Parent=gene-C9F05_RS08975;Dbxref=GenBank:WP_000645137.1;Name=WP_000645137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461742.1;locus_tag=C9F05_RS08975;product=carbohydrate porin;protein_id=WP_000645137.1;transl_table=11
NZ_PYKE01000124.1	RefSeq	gene	1536	3074	.	-	.	ID=gene-C9F05_RS08980;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=C9F05_RS08980;old_locus_tag=C9F05_09210
NZ_PYKE01000124.1	Protein Homology	CDS	1536	3074	.	-	0	ID=cds-WP_001187298.1;Parent=gene-C9F05_RS08980;Dbxref=GenBank:WP_001187298.1;Name=WP_001187298.1;gbkey=CDS;gene=emrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461741.1;locus_tag=C9F05_RS08980;product=multidrug efflux MFS transporter permease subunit EmrB;protein_id=WP_001187298.1;transl_table=11
NZ_PYKE01000124.1	RefSeq	gene	3091	4263	.	-	.	ID=gene-C9F05_RS08985;Name=emrA;gbkey=Gene;gene=emrA;gene_biotype=protein_coding;locus_tag=C9F05_RS08985;old_locus_tag=C9F05_09215
NZ_PYKE01000124.1	Protein Homology	CDS	3091	4263	.	-	0	ID=cds-WP_001275603.1;Parent=gene-C9F05_RS08985;Dbxref=GenBank:WP_001275603.1;Name=WP_001275603.1;gbkey=CDS;gene=emrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461740.1;locus_tag=C9F05_RS08985;product=multidrug efflux MFS transporter periplasmic adaptor subunit EmrA;protein_id=WP_001275603.1;transl_table=11
NZ_PYKE01000124.1	RefSeq	gene	4390	4920	.	-	.	ID=gene-C9F05_RS08990;Name=mprA;gbkey=Gene;gene=mprA;gene_biotype=protein_coding;locus_tag=C9F05_RS08990;old_locus_tag=C9F05_09220
NZ_PYKE01000124.1	Protein Homology	CDS	4390	4920	.	-	0	ID=cds-WP_000378431.1;Parent=gene-C9F05_RS08990;Dbxref=GenBank:WP_000378431.1;Name=WP_000378431.1;gbkey=CDS;gene=mprA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461739.1;locus_tag=C9F05_RS08990;product=transcriptional repressor MprA;protein_id=WP_000378431.1;transl_table=11
##sequence-region NZ_PYKE01000014.1 1 4979
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000014.1	RefSeq	region	1	4979	.	+	.	ID=NZ_PYKE01000014.1:1..4979;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000014.1	RefSeq	gene	113	880	.	+	.	ID=gene-C9F05_RS00680;Name=C9F05_RS00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00680;old_locus_tag=C9F05_00695
NZ_PYKE01000014.1	Protein Homology	CDS	113	880	.	+	0	ID=cds-WP_000125687.1;Parent=gene-C9F05_RS00680;Dbxref=GenBank:WP_000125687.1;Name=WP_000125687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894239.1;locus_tag=C9F05_RS00680;product=SDR family oxidoreductase;protein_id=WP_000125687.1;transl_table=11
NZ_PYKE01000014.1	RefSeq	gene	964	2325	.	+	.	ID=gene-C9F05_RS00685;Name=C9F05_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00685;old_locus_tag=C9F05_00700
NZ_PYKE01000014.1	Protein Homology	CDS	964	2325	.	+	0	ID=cds-WP_000648129.1;Parent=gene-C9F05_RS00685;Dbxref=GenBank:WP_000648129.1;Name=WP_000648129.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000648132.1;locus_tag=C9F05_RS00685;product=MFS transporter;protein_id=WP_000648129.1;transl_table=11
NZ_PYKE01000014.1	RefSeq	gene	2294	3385	.	+	.	ID=gene-C9F05_RS00690;Name=idnD;gbkey=Gene;gene=idnD;gene_biotype=protein_coding;locus_tag=C9F05_RS00690;old_locus_tag=C9F05_00705
NZ_PYKE01000014.1	Protein Homology	CDS	2294	3385	.	+	0	ID=cds-WP_135369932.1;Parent=gene-C9F05_RS00690;Dbxref=GenBank:WP_135369932.1;Name=WP_135369932.1;gbkey=CDS;gene=idnD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001131634.1;locus_tag=C9F05_RS00690;product=L-idonate 5-dehydrogenase;protein_id=WP_135369932.1;transl_table=11
NZ_PYKE01000014.1	RefSeq	gene	3476	4195	.	+	.	ID=gene-C9F05_RS00695;Name=C9F05_RS00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00695;old_locus_tag=C9F05_00710
NZ_PYKE01000014.1	Protein Homology	CDS	3476	4195	.	+	0	ID=cds-WP_000023779.1;Parent=gene-C9F05_RS00695;Dbxref=GenBank:WP_000023779.1;Name=WP_000023779.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000023780.1;locus_tag=C9F05_RS00695;product=FadR/GntR family transcriptional regulator;protein_id=WP_000023779.1;transl_table=11
NZ_PYKE01000014.1	RefSeq	gene	4373	4948	.	-	.	ID=gene-C9F05_RS00700;Name=C9F05_RS00700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00700;old_locus_tag=C9F05_00715
NZ_PYKE01000014.1	Protein Homology	CDS	4373	4948	.	-	0	ID=cds-WP_135369933.1;Parent=gene-C9F05_RS00700;Dbxref=GenBank:WP_135369933.1;Name=WP_135369933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460580.1;locus_tag=C9F05_RS00700;product=YceI family protein;protein_id=WP_135369933.1;transl_table=11
##sequence-region NZ_PYKE01000260.1 1 30694
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000260.1	RefSeq	region	1	30694	.	+	.	ID=NZ_PYKE01000260.1:1..30694;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000260.1	RefSeq	gene	37	693	.	+	.	ID=gene-C9F05_RS16915;Name=pphB;gbkey=Gene;gene=pphB;gene_biotype=protein_coding;locus_tag=C9F05_RS16915;old_locus_tag=C9F05_17410
NZ_PYKE01000260.1	Protein Homology	CDS	37	693	.	+	0	ID=cds-WP_000420451.1;Parent=gene-C9F05_RS16915;Dbxref=GenBank:WP_000420451.1;Name=WP_000420451.1;gbkey=CDS;gene=pphB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461828.1;locus_tag=C9F05_RS16915;product=protein-serine/threonine phosphatase;protein_id=WP_000420451.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	938	1432	.	-	.	ID=gene-C9F05_RS16920;Name=C9F05_RS16920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16920;old_locus_tag=C9F05_17415
NZ_PYKE01000260.1	Protein Homology	CDS	938	1432	.	-	0	ID=cds-WP_000424944.1;Parent=gene-C9F05_RS16920;Dbxref=GenBank:WP_000424944.1;Name=WP_000424944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000424949.1;locus_tag=C9F05_RS16920;product=hypothetical protein;protein_id=WP_000424944.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	1459	2127	.	-	.	ID=gene-C9F05_RS16925;Name=C9F05_RS16925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16925;old_locus_tag=C9F05_17420
NZ_PYKE01000260.1	Protein Homology	CDS	1459	2127	.	-	0	ID=cds-WP_135370492.1;Parent=gene-C9F05_RS16925;Dbxref=GenBank:WP_135370492.1;Name=WP_135370492.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000445913.1;locus_tag=C9F05_RS16925;product=hypothetical protein;protein_id=WP_135370492.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	pseudogene	2284	2514	.	-	.	ID=gene-C9F05_RS16930;Name=C9F05_RS16930;end_range=2514,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS16930;old_locus_tag=C9F05_17425;partial=true;pseudo=true
NZ_PYKE01000260.1	Protein Homology	CDS	2284	2514	.	-	0	ID=cds-C9F05_RS16930;Parent=gene-C9F05_RS16930;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2514,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015869530.1;locus_tag=C9F05_RS16930;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000260.1	RefSeq	pseudogene	2714	3112	.	-	.	ID=gene-C9F05_RS16935;Name=C9F05_RS16935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS16935;old_locus_tag=C9F05_17430;partial=true;pseudo=true;start_range=.,2714
NZ_PYKE01000260.1	Protein Homology	CDS	2714	3112	.	-	0	ID=cds-C9F05_RS16935;Parent=gene-C9F05_RS16935;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461829.1;locus_tag=C9F05_RS16935;partial=true;product=cytoplasmic protein;pseudo=true;start_range=.,2714;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	3271	5838	.	+	.	ID=gene-C9F05_RS16940;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=C9F05_RS16940;old_locus_tag=C9F05_17435
NZ_PYKE01000260.1	Protein Homology	CDS	3271	5838	.	+	0	ID=cds-WP_001005807.1;Parent=gene-C9F05_RS16940;Dbxref=GenBank:WP_001005807.1;Name=WP_001005807.1;Ontology_term=GO:0006298,GO:0005524,GO:0030983;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461830.1;locus_tag=C9F05_RS16940;product=DNA mismatch repair protein MutS;protein_id=WP_001005807.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	5894	6274	.	-	.	ID=gene-C9F05_RS16945;Name=C9F05_RS16945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16945;old_locus_tag=C9F05_17440
NZ_PYKE01000260.1	Protein Homology	CDS	5894	6274	.	-	0	ID=cds-WP_001070459.1;Parent=gene-C9F05_RS16945;Dbxref=GenBank:WP_001070459.1;Name=WP_001070459.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461831.1;locus_tag=C9F05_RS16945;product=DUF4440 domain-containing protein;protein_id=WP_001070459.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	6271	7479	.	-	.	ID=gene-C9F05_RS16950;Name=C9F05_RS16950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16950;old_locus_tag=C9F05_17445
NZ_PYKE01000260.1	Protein Homology	CDS	6271	7479	.	-	0	ID=cds-WP_135370494.1;Parent=gene-C9F05_RS16950;Dbxref=GenBank:WP_135370494.1;Name=WP_135370494.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000222390.1;locus_tag=C9F05_RS16950;product=MFS transporter;protein_id=WP_135370494.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	7567	8499	.	+	.	ID=gene-C9F05_RS16955;Name=C9F05_RS16955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16955;old_locus_tag=C9F05_17450
NZ_PYKE01000260.1	Protein Homology	CDS	7567	8499	.	+	0	ID=cds-WP_000216305.1;Parent=gene-C9F05_RS16955;Dbxref=GenBank:WP_000216305.1;Name=WP_000216305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000216314.1;locus_tag=C9F05_RS16955;product=LysR family transcriptional regulator;protein_id=WP_000216305.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	8541	10037	.	-	.	ID=gene-C9F05_RS16960;Name=C9F05_RS16960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16960;old_locus_tag=C9F05_17455
NZ_PYKE01000260.1	Protein Homology	CDS	8541	10037	.	-	0	ID=cds-WP_000202725.1;Parent=gene-C9F05_RS16960;Dbxref=GenBank:WP_000202725.1;Name=WP_000202725.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461834.1;locus_tag=C9F05_RS16960;product=GntP family permease;protein_id=WP_000202725.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	10034	10984	.	-	.	ID=gene-C9F05_RS16965;Name=denD;gbkey=Gene;gene=denD;gene_biotype=protein_coding;locus_tag=C9F05_RS16965;old_locus_tag=C9F05_17460
NZ_PYKE01000260.1	Protein Homology	CDS	10034	10984	.	-	0	ID=cds-WP_135370495.1;Parent=gene-C9F05_RS16965;Dbxref=GenBank:WP_135370495.1;Name=WP_135370495.1;Ontology_term=GO:0005975,GO:0016491;gbkey=CDS;gene=denD;go_function=oxidoreductase activity|0016491||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461835.1;locus_tag=C9F05_RS16965;product=D-erythronate dehydrogenase;protein_id=WP_135370495.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	11024	11800	.	-	.	ID=gene-C9F05_RS16970;Name=C9F05_RS16970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16970;old_locus_tag=C9F05_17465
NZ_PYKE01000260.1	Protein Homology	CDS	11024	11800	.	-	0	ID=cds-WP_001136942.1;Parent=gene-C9F05_RS16970;Dbxref=GenBank:WP_001136942.1;Name=WP_001136942.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461836.1;locus_tag=C9F05_RS16970;product=HPr family phosphocarrier protein;protein_id=WP_001136942.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	11805	12443	.	-	.	ID=gene-C9F05_RS16975;Name=otnC;gbkey=Gene;gene=otnC;gene_biotype=protein_coding;locus_tag=C9F05_RS16975;old_locus_tag=C9F05_17470
NZ_PYKE01000260.1	Protein Homology	CDS	11805	12443	.	-	0	ID=cds-WP_000153636.1;Parent=gene-C9F05_RS16975;Dbxref=GenBank:WP_000153636.1;Name=WP_000153636.1;Ontology_term=GO:0005996,GO:0016829;gbkey=CDS;gene=otnC;go_function=lyase activity|0016829||IEA;go_process=monosaccharide metabolic process|0005996||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461837.1;locus_tag=C9F05_RS16975;product=3-oxo-tetronate 4-phosphate decarboxylase;protein_id=WP_000153636.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	12440	13702	.	-	.	ID=gene-C9F05_RS16980;Name=otnK;gbkey=Gene;gene=otnK;gene_biotype=protein_coding;locus_tag=C9F05_RS16980;old_locus_tag=C9F05_17475
NZ_PYKE01000260.1	Protein Homology	CDS	12440	13702	.	-	0	ID=cds-WP_001534269.1;Parent=gene-C9F05_RS16980;Dbxref=GenBank:WP_001534269.1;Name=WP_001534269.1;Ontology_term=GO:0005975,GO:0005524,GO:0016301;gbkey=CDS;gene=otnK;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461838.1;locus_tag=C9F05_RS16980;product=3-oxo-tetronate kinase;protein_id=WP_001534269.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	13696	14619	.	-	.	ID=gene-C9F05_RS16985;Name=ltnD;gbkey=Gene;gene=ltnD;gene_biotype=protein_coding;locus_tag=C9F05_RS16985;old_locus_tag=C9F05_17480
NZ_PYKE01000260.1	Protein Homology	CDS	13696	14619	.	-	0	ID=cds-WP_135370496.1;Parent=gene-C9F05_RS16985;Dbxref=GenBank:WP_135370496.1;Name=WP_135370496.1;Ontology_term=GO:0005975,GO:0016616;gbkey=CDS;gene=ltnD;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461839.1;locus_tag=C9F05_RS16985;product=L-threonate dehydrogenase;protein_id=WP_135370496.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	14816	15580	.	+	.	ID=gene-C9F05_RS16990;Name=ygbI;gbkey=Gene;gene=ygbI;gene_biotype=protein_coding;locus_tag=C9F05_RS16990;old_locus_tag=C9F05_17485
NZ_PYKE01000260.1	Protein Homology	CDS	14816	15580	.	+	0	ID=cds-WP_000613178.1;Parent=gene-C9F05_RS16990;Dbxref=GenBank:WP_000613178.1;Name=WP_000613178.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ygbI;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461840.1;locus_tag=C9F05_RS16990;product=DNA-binding transcriptional repressor YgbI;protein_id=WP_000613178.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	15599	16003	.	-	.	ID=gene-C9F05_RS16995;Name=C9F05_RS16995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16995;old_locus_tag=C9F05_17490
NZ_PYKE01000260.1	Protein Homology	CDS	15599	16003	.	-	0	ID=cds-WP_000423338.1;Parent=gene-C9F05_RS16995;Dbxref=GenBank:WP_000423338.1;Name=WP_000423338.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461841.1;locus_tag=C9F05_RS16995;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_000423338.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	16174	16767	.	+	.	ID=gene-C9F05_RS17000;Name=C9F05_RS17000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17000;old_locus_tag=C9F05_17495
NZ_PYKE01000260.1	Protein Homology	CDS	16174	16767	.	+	0	ID=cds-WP_001237180.1;Parent=gene-C9F05_RS17000;Dbxref=GenBank:WP_001237180.1;Name=WP_001237180.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461842.1;locus_tag=C9F05_RS17000;product=non-oxidative hydroxyarylic acid decarboxylases subunit B;protein_id=WP_001237180.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	16767	18194	.	+	.	ID=gene-C9F05_RS17005;Name=C9F05_RS17005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17005;old_locus_tag=C9F05_17500
NZ_PYKE01000260.1	Protein Homology	CDS	16767	18194	.	+	0	ID=cds-WP_000863168.1;Parent=gene-C9F05_RS17005;Dbxref=GenBank:WP_000863168.1;Name=WP_000863168.1;Ontology_term=GO:0016831;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461843.1;locus_tag=C9F05_RS17005;product=non-oxidative hydroxyarylic acid decarboxylases subunit C;protein_id=WP_000863168.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	18205	18441	.	+	.	ID=gene-C9F05_RS17010;Name=C9F05_RS17010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17010;old_locus_tag=C9F05_17505
NZ_PYKE01000260.1	Protein Homology	CDS	18205	18441	.	+	0	ID=cds-WP_126523873.1;Parent=gene-C9F05_RS17010;Dbxref=GenBank:WP_126523873.1;Name=WP_126523873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461844.1;locus_tag=C9F05_RS17010;product=non-oxidative hydroxyarylic acid decarboxylases subunit D;protein_id=WP_126523873.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	18486	19478	.	-	.	ID=gene-C9F05_RS17015;Name=rpoS;gbkey=Gene;gene=rpoS;gene_biotype=protein_coding;locus_tag=C9F05_RS17015;old_locus_tag=C9F05_17510
NZ_PYKE01000260.1	Protein Homology	CDS	18486	19478	.	-	0	ID=cds-WP_000081498.1;Parent=gene-C9F05_RS17015;Dbxref=GenBank:WP_000081498.1;Name=WP_000081498.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000081498.1;locus_tag=C9F05_RS17015;product=RNA polymerase sigma factor RpoS;protein_id=WP_000081498.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	19541	20623	.	-	.	ID=gene-C9F05_RS17020;Name=nlpD;gbkey=Gene;gene=nlpD;gene_biotype=protein_coding;locus_tag=C9F05_RS17020;old_locus_tag=C9F05_17515
NZ_PYKE01000260.1	Protein Homology	CDS	19541	20623	.	-	0	ID=cds-WP_223149274.1;Parent=gene-C9F05_RS17020;Dbxref=GenBank:WP_223149274.1;Name=WP_223149274.1;gbkey=CDS;gene=nlpD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461846.1;locus_tag=C9F05_RS17020;product=murein hydrolase activator NlpD;protein_id=WP_223149274.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	20553	20711	.	+	.	ID=gene-C9F05_RS23890;Name=C9F05_RS23890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23890
NZ_PYKE01000260.1	Protein Homology	CDS	20553	20711	.	+	0	ID=cds-WP_223148970.1;Parent=gene-C9F05_RS23890;Dbxref=GenBank:WP_223148970.1;Name=WP_223148970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001541719.1;locus_tag=C9F05_RS23890;product=peptidase;protein_id=WP_223148970.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	20850	21476	.	-	.	ID=gene-C9F05_RS17025;Name=C9F05_RS17025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17025;old_locus_tag=C9F05_17520
NZ_PYKE01000260.1	Protein Homology	CDS	20850	21476	.	-	0	ID=cds-WP_000253545.1;Parent=gene-C9F05_RS17025;Dbxref=GenBank:WP_000253545.1;Name=WP_000253545.1;Ontology_term=GO:0036211,GO:0004719;gbkey=CDS;go_function=protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|0004719||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130872.1;locus_tag=C9F05_RS17025;product=protein-L-isoaspartate(D-aspartate) O-methyltransferase;protein_id=WP_000253545.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	21470	22231	.	-	.	ID=gene-C9F05_RS17030;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=C9F05_RS17030;old_locus_tag=C9F05_17525
NZ_PYKE01000260.1	Protein Homology	CDS	21470	22231	.	-	0	ID=cds-WP_001221537.1;Parent=gene-C9F05_RS17030;Dbxref=GenBank:WP_001221537.1;Name=WP_001221537.1;Ontology_term=GO:0008252;gbkey=CDS;gene=surE;go_function=nucleotidase activity|0008252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461848.1;locus_tag=C9F05_RS17030;product=5'/3'-nucleotidase SurE;protein_id=WP_001221537.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	22212	23261	.	-	.	ID=gene-C9F05_RS17035;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;locus_tag=C9F05_RS17035;old_locus_tag=C9F05_17530
NZ_PYKE01000260.1	Protein Homology	CDS	22212	23261	.	-	0	ID=cds-WP_000134246.1;Parent=gene-C9F05_RS17035;Dbxref=GenBank:WP_000134246.1;Name=WP_000134246.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=truD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461849.1;locus_tag=C9F05_RS17035;product=tRNA pseudouridine(13) synthase TruD;protein_id=WP_000134246.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	23258	23737	.	-	.	ID=gene-C9F05_RS17040;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=C9F05_RS17040;old_locus_tag=C9F05_17535
NZ_PYKE01000260.1	Protein Homology	CDS	23258	23737	.	-	0	ID=cds-WP_001219245.1;Parent=gene-C9F05_RS17040;Dbxref=GenBank:WP_001219245.1;Name=WP_001219245.1;Ontology_term=GO:0019288,GO:0008685;gbkey=CDS;gene=ispF;go_function=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity|0008685||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461850.1;locus_tag=C9F05_RS17040;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_001219245.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	23737	24447	.	-	.	ID=gene-C9F05_RS17045;Name=ispD;gbkey=Gene;gene=ispD;gene_biotype=protein_coding;locus_tag=C9F05_RS17045;old_locus_tag=C9F05_17540
NZ_PYKE01000260.1	Protein Homology	CDS	23737	24447	.	-	0	ID=cds-WP_000741649.1;Parent=gene-C9F05_RS17045;Dbxref=GenBank:WP_000741649.1;Name=WP_000741649.1;Ontology_term=GO:0008299,GO:0019288,GO:0050518;gbkey=CDS;gene=ispD;go_function=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|0050518||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA,isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461851.1;locus_tag=C9F05_RS17045;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_000741649.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	24466	24777	.	-	.	ID=gene-C9F05_RS17050;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=C9F05_RS17050;old_locus_tag=C9F05_17545
NZ_PYKE01000260.1	Protein Homology	CDS	24466	24777	.	-	0	ID=cds-WP_000517480.1;Parent=gene-C9F05_RS17050;Dbxref=GenBank:WP_000517480.1;Name=WP_000517480.1;gbkey=CDS;gene=ftsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461852.1;locus_tag=C9F05_RS17050;product=cell division protein FtsB;protein_id=WP_000517480.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	24968	25291	.	-	.	ID=gene-C9F05_RS17055;Name=C9F05_RS17055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17055;old_locus_tag=C9F05_17550
NZ_PYKE01000260.1	Protein Homology	CDS	24968	25291	.	-	0	ID=cds-WP_001537530.1;Parent=gene-C9F05_RS17055;Dbxref=GenBank:WP_001537530.1;Name=WP_001537530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001246104.1;locus_tag=C9F05_RS17055;product=DUF3561 family protein;protein_id=WP_001537530.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	25342	25947	.	-	.	ID=gene-C9F05_RS17060;Name=cysC;gbkey=Gene;gene=cysC;gene_biotype=protein_coding;locus_tag=C9F05_RS17060;old_locus_tag=C9F05_17555
NZ_PYKE01000260.1	Protein Homology	CDS	25342	25947	.	-	0	ID=cds-WP_001173663.1;Parent=gene-C9F05_RS17060;Dbxref=GenBank:WP_001173663.1;Name=WP_001173663.1;Ontology_term=GO:0000103,GO:0004020,GO:0005524;gbkey=CDS;gene=cysC;go_function=adenylylsulfate kinase activity|0004020||IEA,ATP binding|0005524||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461854.1;locus_tag=C9F05_RS17060;product=adenylyl-sulfate kinase;protein_id=WP_001173663.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	25934	27373	.	-	.	ID=gene-C9F05_RS17065;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=C9F05_RS17065;old_locus_tag=C9F05_17560
NZ_PYKE01000260.1	Protein Homology	CDS	25934	27373	.	-	0	ID=cds-WP_135370497.1;Parent=gene-C9F05_RS17065;Dbxref=GenBank:WP_135370497.1;Name=WP_135370497.1;Ontology_term=GO:0006790,GO:0003924,GO:0005525;gbkey=CDS;gene=cysN;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461855.1;locus_tag=C9F05_RS17065;product=sulfate adenylyltransferase subunit CysN;protein_id=WP_135370497.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	27383	28291	.	-	.	ID=gene-C9F05_RS17070;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=C9F05_RS17070;old_locus_tag=C9F05_17565
NZ_PYKE01000260.1	Protein Homology	CDS	27383	28291	.	-	0	ID=cds-WP_000372384.1;Parent=gene-C9F05_RS17070;Dbxref=GenBank:WP_000372384.1;Name=WP_000372384.1;Ontology_term=GO:0000103,GO:0004781;gbkey=CDS;gene=cysD;go_function=sulfate adenylyltransferase (ATP) activity|0004781||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130891.1;locus_tag=C9F05_RS17070;product=sulfate adenylyltransferase subunit CysD;protein_id=WP_000372384.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	gene	28542	29588	.	+	.	ID=gene-C9F05_RS17075;Name=C9F05_RS17075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17075;old_locus_tag=C9F05_17570
NZ_PYKE01000260.1	Protein Homology	CDS	28542	29588	.	+	0	ID=cds-WP_000490481.1;Parent=gene-C9F05_RS17075;Dbxref=GenBank:WP_000490481.1;Name=WP_000490481.1;Ontology_term=GO:0008235;gbkey=CDS;go_function=metalloexopeptidase activity|0008235||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461857.1;locus_tag=C9F05_RS17075;product=aminopeptidase;protein_id=WP_000490481.1;transl_table=11
NZ_PYKE01000260.1	RefSeq	direct_repeat	29603	30668	.	+	.	ID=id-NZ_PYKE01000260.1:29603..30668;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=29603..29631;rpt_unit_seq=cggtttatccccgctggcgcggggaacac
##sequence-region NZ_PYKE01000018.1 1 4918
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000018.1	RefSeq	region	1	4918	.	+	.	ID=NZ_PYKE01000018.1:1..4918;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000018.1	RefSeq	gene	150	935	.	+	.	ID=gene-C9F05_RS00810;Name=C9F05_RS00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00810;old_locus_tag=C9F05_00820
NZ_PYKE01000018.1	Protein Homology	CDS	150	935	.	+	0	ID=cds-WP_000448642.1;Parent=gene-C9F05_RS00810;Dbxref=GenBank:WP_000448642.1;Name=WP_000448642.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462693.1;locus_tag=C9F05_RS00810;product=DeoR family transcriptional regulator;protein_id=WP_000448642.1;transl_table=11
NZ_PYKE01000018.1	RefSeq	gene	937	1227	.	-	.	ID=gene-C9F05_RS00815;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=C9F05_RS00815;old_locus_tag=C9F05_00825
NZ_PYKE01000018.1	Protein Homology	CDS	937	1227	.	-	0	ID=cds-WP_001171826.1;Parent=gene-C9F05_RS00815;Dbxref=GenBank:WP_001171826.1;Name=WP_001171826.1;gbkey=CDS;gene=ilvN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462694.1;locus_tag=C9F05_RS00815;product=acetolactate synthase small subunit;protein_id=WP_001171826.1;transl_table=11
NZ_PYKE01000018.1	RefSeq	gene	1231	2919	.	-	.	ID=gene-C9F05_RS00820;Name=ilvB;gbkey=Gene;gene=ilvB;gene_biotype=protein_coding;locus_tag=C9F05_RS00820;old_locus_tag=C9F05_00830
NZ_PYKE01000018.1	Protein Homology	CDS	1231	2919	.	-	0	ID=cds-WP_000168439.1;Parent=gene-C9F05_RS00820;Dbxref=GenBank:WP_000168439.1;Name=WP_000168439.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvB;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462695.1;locus_tag=C9F05_RS00820;product=acetolactate synthase large subunit;protein_id=WP_000168439.1;transl_table=11
NZ_PYKE01000018.1	RefSeq	gene	3026	3124	.	-	.	ID=gene-C9F05_RS00825;Name=ivbL;gbkey=Gene;gene=ivbL;gene_biotype=protein_coding;locus_tag=C9F05_RS00825;old_locus_tag=C9F05_00835
NZ_PYKE01000018.1	Protein Homology	CDS	3026	3124	.	-	0	ID=cds-WP_001541152.1;Parent=gene-C9F05_RS00825;Dbxref=GenBank:WP_001541152.1;Name=WP_001541152.1;gbkey=CDS;gene=ivbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462696.1;locus_tag=C9F05_RS00825;product=ilvB operon leader peptide IvbL;protein_id=WP_001541152.1;transl_table=11
NZ_PYKE01000018.1	RefSeq	pseudogene	3647	3761	.	+	.	ID=gene-C9F05_RS00830;Name=C9F05_RS00830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS00830;old_locus_tag=C9F05_00840;pseudo=true
NZ_PYKE01000018.1	Protein Homology	CDS	3647	3761	.	+	0	ID=cds-C9F05_RS00830;Parent=gene-C9F05_RS00830;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009325922.1;locus_tag=C9F05_RS00830;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000018.1	RefSeq	gene	3758	3847	.	+	.	ID=gene-C9F05_RS00835;Name=tisB;gbkey=Gene;gene=tisB;gene_biotype=protein_coding;locus_tag=C9F05_RS00835;old_locus_tag=C9F05_00845
NZ_PYKE01000018.1	Protein Homology	CDS	3758	3847	.	+	0	ID=cds-WP_000117642.1;Parent=gene-C9F05_RS00835;Dbxref=GenBank:WP_000117642.1;Name=WP_000117642.1;gbkey=CDS;gene=tisB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453107.1;locus_tag=C9F05_RS00835;product=type I toxin-antitoxin system toxin TisB;protein_id=WP_000117642.1;transl_table=11
NZ_PYKE01000018.1	RefSeq	gene	3940	4800	.	+	.	ID=gene-C9F05_RS00840;Name=C9F05_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00840;old_locus_tag=C9F05_00850
NZ_PYKE01000018.1	Protein Homology	CDS	3940	4800	.	+	0	ID=cds-WP_020437762.1;Parent=gene-C9F05_RS00840;Dbxref=GenBank:WP_020437762.1;Name=WP_020437762.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462698.3;locus_tag=C9F05_RS00840;product=DMT family transporter;protein_id=WP_020437762.1;transl_table=11
##sequence-region NZ_PYKE01000110.1 1 30666
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000110.1	RefSeq	region	1	30666	.	+	.	ID=NZ_PYKE01000110.1:1..30666;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000110.1	RefSeq	gene	52	684	.	+	.	ID=gene-C9F05_RS08120;Name=yrbL;gbkey=Gene;gene=yrbL;gene_biotype=protein_coding;locus_tag=C9F05_RS08120;old_locus_tag=C9F05_08310
NZ_PYKE01000110.1	Protein Homology	CDS	52	684	.	+	0	ID=cds-WP_135370171.1;Parent=gene-C9F05_RS08120;Dbxref=GenBank:WP_135370171.1;Name=WP_135370171.1;gbkey=CDS;gene=yrbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462235.1;locus_tag=C9F05_RS08120;product=PhoP regulatory network protein YrbL;protein_id=WP_135370171.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	759	1487	.	-	.	ID=gene-C9F05_RS08125;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=C9F05_RS08125;old_locus_tag=C9F05_08315
NZ_PYKE01000110.1	Protein Homology	CDS	759	1487	.	-	0	ID=cds-WP_000044653.1;Parent=gene-C9F05_RS08125;Dbxref=GenBank:WP_000044653.1;Name=WP_000044653.1;Ontology_term=GO:0009252,GO:0016763,GO:0009274,GO:0016020;gbkey=CDS;gene=mtgA;go_component=peptidoglycan-based cell wall|0009274||IEA,membrane|0016020||IEA;go_function=pentosyltransferase activity|0016763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462236.1;locus_tag=C9F05_RS08125;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=WP_000044653.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	1484	2137	.	-	.	ID=gene-C9F05_RS08130;Name=elbB;gbkey=Gene;gene=elbB;gene_biotype=protein_coding;locus_tag=C9F05_RS08130;old_locus_tag=C9F05_08320
NZ_PYKE01000110.1	Protein Homology	CDS	1484	2137	.	-	0	ID=cds-WP_135370172.1;Parent=gene-C9F05_RS08130;Dbxref=GenBank:WP_135370172.1;Name=WP_135370172.1;gbkey=CDS;gene=elbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462237.1;locus_tag=C9F05_RS08130;product=isoprenoid biosynthesis glyoxalase ElbB;protein_id=WP_135370172.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	2364	4700	.	-	.	ID=gene-C9F05_RS08135;Name=arcB;gbkey=Gene;gene=arcB;gene_biotype=protein_coding;locus_tag=C9F05_RS08135;old_locus_tag=C9F05_08325
NZ_PYKE01000110.1	Protein Homology	CDS	2364	4700	.	-	0	ID=cds-WP_000809813.1;Parent=gene-C9F05_RS08135;Dbxref=GenBank:WP_000809813.1;Name=WP_000809813.1;Ontology_term=GO:0000160,GO:0006355,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=arcB;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462238.1;locus_tag=C9F05_RS08135;product=aerobic respiration two-component sensor histidine kinase ArcB;protein_id=WP_000809813.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	4794	5723	.	-	.	ID=gene-C9F05_RS08140;Name=C9F05_RS08140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08140;old_locus_tag=C9F05_08330
NZ_PYKE01000110.1	Protein Homology	CDS	4794	5723	.	-	0	ID=cds-WP_001176879.1;Parent=gene-C9F05_RS08140;Dbxref=GenBank:WP_001176879.1;Name=WP_001176879.1;Note=This family includes YhcC from E. coli K-12%2C an uncharacterized radical SAM protein.;Ontology_term=GO:0051536,GO:1904047;gbkey=CDS;go_function=iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462239.1;locus_tag=C9F05_RS08140;product=TIGR01212 family radical SAM protein;protein_id=WP_001176879.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	6395	10855	.	+	.	ID=gene-C9F05_RS08145;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=C9F05_RS08145;old_locus_tag=C9F05_08340
NZ_PYKE01000110.1	Protein Homology	CDS	6395	10855	.	+	0	ID=cds-WP_001748595.1;Parent=gene-C9F05_RS08145;Dbxref=GenBank:WP_001748595.1;Name=WP_001748595.1;Ontology_term=GO:0006537,GO:0008152,GO:0003824,GO:0015930,GO:0016491;gbkey=CDS;gene=gltB;go_function=catalytic activity|0003824||IEA,glutamate synthase activity|0015930||IEA,oxidoreductase activity|0016491||IEA;go_process=glutamate biosynthetic process|0006537||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742510.1;locus_tag=C9F05_RS08145;product=glutamate synthase large subunit;protein_id=WP_001748595.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	10865	12283	.	+	.	ID=gene-C9F05_RS08150;Name=gltD;gbkey=Gene;gene=gltD;gene_biotype=protein_coding;locus_tag=C9F05_RS08150;old_locus_tag=C9F05_08345
NZ_PYKE01000110.1	Protein Homology	CDS	10865	12283	.	+	0	ID=cds-WP_135370173.1;Parent=gene-C9F05_RS08150;Dbxref=GenBank:WP_135370173.1;Name=WP_135370173.1;gbkey=CDS;gene=gltD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001540975.1;locus_tag=C9F05_RS08150;product=glutamate synthase subunit GltD;protein_id=WP_135370173.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	12491	13594	.	+	.	ID=gene-C9F05_RS08155;Name=C9F05_RS08155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08155;old_locus_tag=C9F05_08350
NZ_PYKE01000110.1	Protein Homology	CDS	12491	13594	.	+	0	ID=cds-WP_000184305.1;Parent=gene-C9F05_RS08155;Dbxref=GenBank:WP_000184305.1;Name=WP_000184305.1;Ontology_term=GO:0003677,GO:0004518;gbkey=CDS;go_function=DNA binding|0003677||IEA,nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462242.1;locus_tag=C9F05_RS08155;product=PDDEXK nuclease domain-containing protein;protein_id=WP_000184305.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	13710	14963	.	+	.	ID=gene-C9F05_RS08160;Name=codB;gbkey=Gene;gene=codB;gene_biotype=protein_coding;locus_tag=C9F05_RS08160;old_locus_tag=C9F05_08355
NZ_PYKE01000110.1	Protein Homology	CDS	13710	14963	.	+	0	ID=cds-WP_000076271.1;Parent=gene-C9F05_RS08160;Dbxref=GenBank:WP_000076271.1;Name=WP_000076271.1;Ontology_term=GO:0055085,GO:0015209,GO:0016020;gbkey=CDS;gene=codB;go_component=membrane|0016020||IEA;go_function=cytosine transmembrane transporter activity|0015209||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462243.1;locus_tag=C9F05_RS08160;product=cytosine permease;protein_id=WP_000076271.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	14950	16230	.	+	.	ID=gene-C9F05_RS08165;Name=C9F05_RS08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08165;old_locus_tag=C9F05_08360
NZ_PYKE01000110.1	Protein Homology	CDS	14950	16230	.	+	0	ID=cds-WP_135370174.1;Parent=gene-C9F05_RS08165;Dbxref=GenBank:WP_135370174.1;Name=WP_135370174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462244.1;locus_tag=C9F05_RS08165;product=cytosine deaminase;protein_id=WP_135370174.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	16314	16781	.	-	.	ID=gene-C9F05_RS08170;Name=nanQ;gbkey=Gene;gene=nanQ;gene_biotype=protein_coding;locus_tag=C9F05_RS08170;old_locus_tag=C9F05_08365
NZ_PYKE01000110.1	Protein Homology	CDS	16314	16781	.	-	0	ID=cds-WP_000979900.1;Parent=gene-C9F05_RS08170;Dbxref=GenBank:WP_000979900.1;Name=WP_000979900.1;Ontology_term=GO:0006974;gbkey=CDS;gene=nanQ;go_process=DNA damage response|0006974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462245.1;locus_tag=C9F05_RS08170;product=N-acetylneuraminate anomerase;protein_id=WP_000979900.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	16778	17653	.	-	.	ID=gene-C9F05_RS08175;Name=nanK;gbkey=Gene;gene=nanK;gene_biotype=protein_coding;locus_tag=C9F05_RS08175;old_locus_tag=C9F05_08370
NZ_PYKE01000110.1	Protein Homology	CDS	16778	17653	.	-	0	ID=cds-WP_023233634.1;Parent=gene-C9F05_RS08175;Dbxref=GenBank:WP_023233634.1;Name=WP_023233634.1;Ontology_term=GO:0019262,GO:0005524,GO:0009384;gbkey=CDS;gene=nanK;go_function=ATP binding|0005524||IEA,N-acylmannosamine kinase activity|0009384||IEA;go_process=N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462246.1;locus_tag=C9F05_RS08175;product=N-acetylmannosamine kinase;protein_id=WP_023233634.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	17650	18339	.	-	.	ID=gene-C9F05_RS08180;Name=C9F05_RS08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08180;old_locus_tag=C9F05_08375
NZ_PYKE01000110.1	Protein Homology	CDS	17650	18339	.	-	0	ID=cds-WP_000054444.1;Parent=gene-C9F05_RS08180;Dbxref=GenBank:WP_000054444.1;Name=WP_000054444.1;Ontology_term=GO:0005975,GO:0006051,GO:0019262,GO:0047465;gbkey=CDS;go_function=N-acylglucosamine-6-phosphate 2-epimerase activity|0047465||IEA;go_process=carbohydrate metabolic process|0005975||IEA,N-acetylmannosamine metabolic process|0006051||IEA,N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462247.1;locus_tag=C9F05_RS08180;product=N-acetylmannosamine-6-phosphate 2-epimerase;protein_id=WP_000054444.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	18386	19876	.	-	.	ID=gene-C9F05_RS08185;Name=nanT;gbkey=Gene;gene=nanT;gene_biotype=protein_coding;locus_tag=C9F05_RS08185;old_locus_tag=C9F05_08380
NZ_PYKE01000110.1	Protein Homology	CDS	18386	19876	.	-	0	ID=cds-WP_000108071.1;Parent=gene-C9F05_RS08185;Dbxref=GenBank:WP_000108071.1;Name=WP_000108071.1;gbkey=CDS;gene=nanT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462248.1;locus_tag=C9F05_RS08185;product=sialic acid transporter NanT;protein_id=WP_000108071.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	19992	20885	.	-	.	ID=gene-C9F05_RS08190;Name=nanA;gbkey=Gene;gene=nanA;gene_biotype=protein_coding;locus_tag=C9F05_RS08190;old_locus_tag=C9F05_08385
NZ_PYKE01000110.1	Protein Homology	CDS	19992	20885	.	-	0	ID=cds-WP_001029667.1;Parent=gene-C9F05_RS08190;Dbxref=GenBank:WP_001029667.1;Name=WP_001029667.1;Ontology_term=GO:0005975,GO:0008747;gbkey=CDS;gene=nanA;go_function=N-acetylneuraminate lyase activity|0008747||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462249.1;locus_tag=C9F05_RS08190;product=N-acetylneuraminate lyase;protein_id=WP_001029667.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	21020	21811	.	-	.	ID=gene-C9F05_RS08195;Name=nanR;gbkey=Gene;gene=nanR;gene_biotype=protein_coding;locus_tag=C9F05_RS08195;old_locus_tag=C9F05_08390
NZ_PYKE01000110.1	Protein Homology	CDS	21020	21811	.	-	0	ID=cds-WP_000382926.1;Parent=gene-C9F05_RS08195;Dbxref=GenBank:WP_000382926.1;Name=WP_000382926.1;gbkey=CDS;gene=nanR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462250.1;locus_tag=C9F05_RS08195;product=transcriptional regulator NanR;protein_id=WP_000382926.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	21920	22420	.	-	.	ID=gene-C9F05_RS08200;Name=sspB;gbkey=Gene;gene=sspB;gene_biotype=protein_coding;locus_tag=C9F05_RS08200;old_locus_tag=C9F05_08395
NZ_PYKE01000110.1	Protein Homology	CDS	21920	22420	.	-	0	ID=cds-WP_000366112.1;Parent=gene-C9F05_RS08200;Dbxref=GenBank:WP_000366112.1;Name=WP_000366112.1;gbkey=CDS;gene=sspB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462251.1;locus_tag=C9F05_RS08200;product=ClpXP protease specificity-enhancing factor;protein_id=WP_000366112.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	22426	23064	.	-	.	ID=gene-C9F05_RS08205;Name=sspA;gbkey=Gene;gene=sspA;gene_biotype=protein_coding;locus_tag=C9F05_RS08205;old_locus_tag=C9F05_08400
NZ_PYKE01000110.1	Protein Homology	CDS	22426	23064	.	-	0	ID=cds-WP_000257298.1;Parent=gene-C9F05_RS08205;Dbxref=GenBank:WP_000257298.1;Name=WP_000257298.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=sspA;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000257299.1;locus_tag=C9F05_RS08205;product=stringent starvation protein SspA;protein_id=WP_000257298.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	23327	24079	.	-	.	ID=gene-C9F05_RS08210;Name=C9F05_RS08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08210;old_locus_tag=C9F05_08405
NZ_PYKE01000110.1	Protein Homology	CDS	23327	24079	.	-	0	ID=cds-WP_000950539.1;Parent=gene-C9F05_RS08210;Dbxref=GenBank:WP_000950539.1;Name=WP_000950539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462253.1;locus_tag=C9F05_RS08210;product=DUF695 domain-containing protein;protein_id=WP_000950539.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	24279	24671	.	-	.	ID=gene-C9F05_RS08220;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=C9F05_RS08220;old_locus_tag=C9F05_08415
NZ_PYKE01000110.1	Protein Homology	CDS	24279	24671	.	-	0	ID=cds-WP_000829815.1;Parent=gene-C9F05_RS08220;Dbxref=GenBank:WP_000829815.1;Name=WP_000829815.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000829824.1;locus_tag=C9F05_RS08220;product=30S ribosomal protein S9;protein_id=WP_000829815.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	24687	25115	.	-	.	ID=gene-C9F05_RS08225;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=C9F05_RS08225;old_locus_tag=C9F05_08420
NZ_PYKE01000110.1	Protein Homology	CDS	24687	25115	.	-	0	ID=cds-WP_000847559.1;Parent=gene-C9F05_RS08225;Dbxref=GenBank:WP_000847559.1;Name=WP_000847559.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplM;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010847760.1;locus_tag=C9F05_RS08225;product=50S ribosomal protein L13;protein_id=WP_000847559.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	25418	26542	.	-	.	ID=gene-C9F05_RS08230;Name=zapE;gbkey=Gene;gene=zapE;gene_biotype=protein_coding;locus_tag=C9F05_RS08230;old_locus_tag=C9F05_08425
NZ_PYKE01000110.1	Protein Homology	CDS	25418	26542	.	-	0	ID=cds-WP_001191222.1;Parent=gene-C9F05_RS08230;Dbxref=GenBank:WP_001191222.1;Name=WP_001191222.1;Ontology_term=GO:0051301,GO:0005524,GO:0016887;gbkey=CDS;gene=zapE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462256.1;locus_tag=C9F05_RS08230;product=cell division protein ZapE;protein_id=WP_001191222.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	26735	27133	.	+	.	ID=gene-C9F05_RS08235;Name=zapG;gbkey=Gene;gene=zapG;gene_biotype=protein_coding;locus_tag=C9F05_RS08235;old_locus_tag=C9F05_08430
NZ_PYKE01000110.1	Protein Homology	CDS	26735	27133	.	+	0	ID=cds-WP_001519074.1;Parent=gene-C9F05_RS08235;Dbxref=GenBank:WP_001519074.1;Name=WP_001519074.1;gbkey=CDS;gene=zapG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121352.1;locus_tag=C9F05_RS08235;product=Z-ring associated protein ZapG;protein_id=WP_001519074.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	27290	28657	.	+	.	ID=gene-C9F05_RS08240;Name=degQ;gbkey=Gene;gene=degQ;gene_biotype=protein_coding;locus_tag=C9F05_RS08240;old_locus_tag=C9F05_08435
NZ_PYKE01000110.1	Protein Homology	CDS	27290	28657	.	+	0	ID=cds-WP_000716690.1;Parent=gene-C9F05_RS08240;Dbxref=GenBank:WP_000716690.1;Name=WP_000716690.1;Ontology_term=GO:0006508,GO:0004252,GO:0005515;gbkey=CDS;gene=degQ;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462258.1;locus_tag=C9F05_RS08240;product=serine endoprotease DegQ;protein_id=WP_000716690.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	28750	29820	.	+	.	ID=gene-C9F05_RS08245;Name=degS;gbkey=Gene;gene=degS;gene_biotype=protein_coding;locus_tag=C9F05_RS08245;old_locus_tag=C9F05_08440
NZ_PYKE01000110.1	Protein Homology	CDS	28750	29820	.	+	0	ID=cds-WP_000497705.1;Parent=gene-C9F05_RS08245;Dbxref=GenBank:WP_000497705.1;Name=WP_000497705.1;Ontology_term=GO:0006508,GO:0004252;gbkey=CDS;gene=degS;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462259.1;locus_tag=C9F05_RS08245;product=outer membrane-stress sensor serine endopeptidase DegS;protein_id=WP_000497705.1;transl_table=11
NZ_PYKE01000110.1	RefSeq	gene	29854	30585	.	-	.	ID=gene-C9F05_RS08250;Name=C9F05_RS08250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08250;old_locus_tag=C9F05_08445
NZ_PYKE01000110.1	Protein Homology	CDS	29854	30585	.	-	0	ID=cds-WP_058144879.1;Parent=gene-C9F05_RS08250;Dbxref=GenBank:WP_058144879.1;Name=WP_058144879.1;Ontology_term=GO:0016310,GO:0005524,GO:0046917;gbkey=CDS;go_function=ATP binding|0005524||IEA,triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462260.1;locus_tag=C9F05_RS08250;product=triphosphoribosyl-dephospho-CoA synthase;protein_id=WP_058144879.1;transl_table=11
##sequence-region NZ_PYKE01000262.1 1 4650
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000262.1	RefSeq	region	1	4650	.	+	.	ID=NZ_PYKE01000262.1:1..4650;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000262.1	RefSeq	gene	209	324	.	+	.	ID=gene-C9F05_RS17130;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=C9F05_RS17130;old_locus_tag=C9F05_17625
NZ_PYKE01000262.1	cmsearch	rRNA	209	324	.	+	.	ID=rna-C9F05_RS17130;Parent=gene-C9F05_RS17130;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS17130;product=5S ribosomal RNA
NZ_PYKE01000262.1	cmsearch	exon	209	324	.	+	.	ID=exon-C9F05_RS17130-1;Parent=rna-C9F05_RS17130;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS17130;product=5S ribosomal RNA
NZ_PYKE01000262.1	RefSeq	gene	506	1534	.	+	.	ID=gene-C9F05_RS17140;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=C9F05_RS17140;old_locus_tag=C9F05_17630
NZ_PYKE01000262.1	Protein Homology	CDS	506	1534	.	+	0	ID=cds-WP_000149799.1;Parent=gene-C9F05_RS17140;Dbxref=GenBank:WP_000149799.1;Name=WP_000149799.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463011.1;locus_tag=C9F05_RS17140;product=UDP-N-acetylmuramate dehydrogenase;protein_id=WP_000149799.1;transl_table=11
NZ_PYKE01000262.1	RefSeq	gene	1531	2493	.	+	.	ID=gene-C9F05_RS17145;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=C9F05_RS17145;old_locus_tag=C9F05_17635
NZ_PYKE01000262.1	Protein Homology	CDS	1531	2493	.	+	0	ID=cds-WP_000655746.1;Parent=gene-C9F05_RS17145;Dbxref=GenBank:WP_000655746.1;Name=WP_000655746.1;Ontology_term=GO:0036211,GO:0004077;gbkey=CDS;gene=birA;go_function=biotin--[biotin carboxyl-carrier protein] ligase activity|0004077||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463012.1;locus_tag=C9F05_RS17145;product=bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;protein_id=WP_000655746.1;transl_table=11
NZ_PYKE01000262.1	RefSeq	gene	2528	3478	.	-	.	ID=gene-C9F05_RS17150;Name=coaA;gbkey=Gene;gene=coaA;gene_biotype=protein_coding;locus_tag=C9F05_RS17150;old_locus_tag=C9F05_17640
NZ_PYKE01000262.1	Protein Homology	CDS	2528	3478	.	-	0	ID=cds-WP_000023069.1;Parent=gene-C9F05_RS17150;Dbxref=GenBank:WP_000023069.1;Name=WP_000023069.1;Ontology_term=GO:0015937,GO:0004594;gbkey=CDS;gene=coaA;go_function=pantothenate kinase activity|0004594||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463013.1;locus_tag=C9F05_RS17150;product=type I pantothenate kinase;protein_id=WP_000023069.1;transl_table=11
NZ_PYKE01000262.1	RefSeq	gene	3687	3860	.	-	.	ID=gene-C9F05_RS17155;Name=C9F05_RS17155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17155;old_locus_tag=C9F05_17650
NZ_PYKE01000262.1	Protein Homology	CDS	3687	3860	.	-	0	ID=cds-WP_001541267.1;Parent=gene-C9F05_RS17155;Dbxref=GenBank:WP_001541267.1;Name=WP_001541267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463014.1;locus_tag=C9F05_RS17155;product=hypothetical protein;protein_id=WP_001541267.1;transl_table=11
NZ_PYKE01000262.1	RefSeq	gene	3880	3955	.	+	.	ID=gene-C9F05_RS17160;Name=C9F05_RS17160;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17160;old_locus_tag=C9F05_17655
NZ_PYKE01000262.1	tRNAscan-SE	tRNA	3880	3955	.	+	.	ID=rna-C9F05_RS17160;Parent=gene-C9F05_RS17160;anticodon=(pos:3913..3915);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17160;product=tRNA-Thr
NZ_PYKE01000262.1	tRNAscan-SE	exon	3880	3955	.	+	.	ID=exon-C9F05_RS17160-1;Parent=rna-C9F05_RS17160;anticodon=(pos:3913..3915);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17160;product=tRNA-Thr
NZ_PYKE01000262.1	RefSeq	gene	3964	4048	.	+	.	ID=gene-C9F05_RS17165;Name=C9F05_RS17165;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17165;old_locus_tag=C9F05_17660
NZ_PYKE01000262.1	tRNAscan-SE	tRNA	3964	4048	.	+	.	ID=rna-C9F05_RS17165;Parent=gene-C9F05_RS17165;anticodon=(pos:3998..4000);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17165;product=tRNA-Tyr
NZ_PYKE01000262.1	tRNAscan-SE	exon	3964	4048	.	+	.	ID=exon-C9F05_RS17165-1;Parent=rna-C9F05_RS17165;anticodon=(pos:3998..4000);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17165;product=tRNA-Tyr
NZ_PYKE01000262.1	RefSeq	gene	4165	4239	.	+	.	ID=gene-C9F05_RS17170;Name=C9F05_RS17170;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17170;old_locus_tag=C9F05_17665
NZ_PYKE01000262.1	tRNAscan-SE	tRNA	4165	4239	.	+	.	ID=rna-C9F05_RS17170;Parent=gene-C9F05_RS17170;anticodon=(pos:4198..4200);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17170;product=tRNA-Gly
NZ_PYKE01000262.1	tRNAscan-SE	exon	4165	4239	.	+	.	ID=exon-C9F05_RS17170-1;Parent=rna-C9F05_RS17170;anticodon=(pos:4198..4200);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17170;product=tRNA-Gly
NZ_PYKE01000262.1	RefSeq	gene	4246	4321	.	+	.	ID=gene-C9F05_RS17175;Name=C9F05_RS17175;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS17175;old_locus_tag=C9F05_17670
NZ_PYKE01000262.1	tRNAscan-SE	tRNA	4246	4321	.	+	.	ID=rna-C9F05_RS17175;Parent=gene-C9F05_RS17175;anticodon=(pos:4279..4281);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17175;product=tRNA-Thr
NZ_PYKE01000262.1	tRNAscan-SE	exon	4246	4321	.	+	.	ID=exon-C9F05_RS17175-1;Parent=rna-C9F05_RS17175;anticodon=(pos:4279..4281);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS17175;product=tRNA-Thr
NZ_PYKE01000262.1	RefSeq	gene	4437	4650	.	+	.	ID=gene-C9F05_RS17180;Name=C9F05_RS17180;end_range=4650,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17180;old_locus_tag=C9F05_17675;partial=true
NZ_PYKE01000262.1	Protein Homology	CDS	4437	4650	.	+	0	ID=cds-WP_000031662.1;Parent=gene-C9F05_RS17180;Dbxref=GenBank:WP_000031662.1;Name=WP_000031662.1;Ontology_term=GO:0003924,GO:0005525;end_range=4650,.;gbkey=CDS;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=C9F05_RS17180;partial=true;product=GTP-binding protein;protein_id=WP_000031662.1;transl_table=11
##sequence-region NZ_PYKE01000191.1 1 4605
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000191.1	RefSeq	region	1	4605	.	+	.	ID=NZ_PYKE01000191.1:1..4605;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000191.1	RefSeq	gene	44	547	.	+	.	ID=gene-C9F05_RS12590;Name=C9F05_RS12590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12590;old_locus_tag=C9F05_12960
NZ_PYKE01000191.1	Protein Homology	CDS	44	547	.	+	0	ID=cds-WP_001519079.1;Parent=gene-C9F05_RS12590;Dbxref=GenBank:WP_001519079.1;Name=WP_001519079.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463333.1;locus_tag=C9F05_RS12590;product=GNAT family N-acetyltransferase;protein_id=WP_001519079.1;transl_table=11
NZ_PYKE01000191.1	RefSeq	gene	654	1142	.	+	.	ID=gene-C9F05_RS12595;Name=C9F05_RS12595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12595;old_locus_tag=C9F05_12965
NZ_PYKE01000191.1	Protein Homology	CDS	654	1142	.	+	0	ID=cds-WP_000826193.1;Parent=gene-C9F05_RS12595;Dbxref=GenBank:WP_000826193.1;Name=WP_000826193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463332.1;locus_tag=C9F05_RS12595;product=DUF3617 domain-containing protein;protein_id=WP_000826193.1;transl_table=11
NZ_PYKE01000191.1	RefSeq	gene	1376	2188	.	-	.	ID=gene-C9F05_RS12600;Name=miaE;gbkey=Gene;gene=miaE;gene_biotype=protein_coding;locus_tag=C9F05_RS12600;old_locus_tag=C9F05_12970
NZ_PYKE01000191.1	Protein Homology	CDS	1376	2188	.	-	0	ID=cds-WP_135370332.1;Parent=gene-C9F05_RS12600;Dbxref=GenBank:WP_135370332.1;Name=WP_135370332.1;Ontology_term=GO:0006400,GO:0004497,GO:0045301,GO:0046872;gbkey=CDS;gene=miaE;go_function=monooxygenase activity|0004497||IEA,tRNA 2-(methylsulfanyl)-N(6)-isopentenyladenosine(37) hydroxylase activity|0045301||IEA,metal ion binding|0046872||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463331.1;locus_tag=C9F05_RS12600;product=tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE;protein_id=WP_135370332.1;transl_table=11
NZ_PYKE01000191.1	RefSeq	gene	2200	2616	.	-	.	ID=gene-C9F05_RS12605;Name=rraB;gbkey=Gene;gene=rraB;gene_biotype=protein_coding;locus_tag=C9F05_RS12605;old_locus_tag=C9F05_12975
NZ_PYKE01000191.1	Protein Homology	CDS	2200	2616	.	-	0	ID=cds-WP_000002940.1;Parent=gene-C9F05_RS12605;Dbxref=GenBank:WP_000002940.1;Name=WP_000002940.1;gbkey=CDS;gene=rraB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463330.1;locus_tag=C9F05_RS12605;product=ribonuclease E inhibitor RraB;protein_id=WP_000002940.1;transl_table=11
NZ_PYKE01000191.1	RefSeq	gene	2717	2812	.	+	.	ID=gene-C9F05_RS24155;Name=argL;gbkey=Gene;gene=argL;gene_biotype=protein_coding;locus_tag=C9F05_RS24155
NZ_PYKE01000191.1	Protein Homology	CDS	2717	2812	.	+	0	ID=cds-WP_223148976.1;Parent=gene-C9F05_RS24155;Dbxref=GenBank:WP_223148976.1;Name=WP_223148976.1;gbkey=CDS;gene=argL;inference=COORDINATES: protein motif:HMM:NF047283.2;locus_tag=C9F05_RS24155;product=putative translational regulatory protein ArgL;protein_id=WP_223148976.1;transl_table=11
NZ_PYKE01000191.1	RefSeq	gene	2782	3786	.	+	.	ID=gene-C9F05_RS12610;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=C9F05_RS12610;old_locus_tag=C9F05_12980
NZ_PYKE01000191.1	Protein Homology	CDS	2782	3786	.	+	0	ID=cds-WP_000103041.1;Parent=gene-C9F05_RS12610;Dbxref=GenBank:WP_000103041.1;Name=WP_000103041.1;Ontology_term=GO:0042450,GO:0004585;gbkey=CDS;gene=argF;go_function=ornithine carbamoyltransferase activity|0004585||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463329.1;locus_tag=C9F05_RS12610;product=ornithine carbamoyltransferase;protein_id=WP_000103041.1;transl_table=11
NZ_PYKE01000191.1	RefSeq	gene	3860	4312	.	-	.	ID=gene-C9F05_RS12615;Name=C9F05_RS12615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12615;old_locus_tag=C9F05_12985
NZ_PYKE01000191.1	Protein Homology	CDS	3860	4312	.	-	0	ID=cds-WP_023194706.1;Parent=gene-C9F05_RS12615;Dbxref=GenBank:WP_023194706.1;Name=WP_023194706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463328.1;locus_tag=C9F05_RS12615;product=YhcH/YjgK/YiaL family protein;protein_id=WP_023194706.1;transl_table=11
##sequence-region NZ_PYKE01000098.1 1 30653
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000098.1	RefSeq	region	1	30653	.	+	.	ID=NZ_PYKE01000098.1:1..30653;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000098.1	RefSeq	pseudogene	1	445	.	+	.	ID=gene-C9F05_RS07075;Name=ssaU;gbkey=Gene;gene=ssaU;gene_biotype=pseudogene;locus_tag=C9F05_RS07075;old_locus_tag=C9F05_07225;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000098.1	Protein Homology	CDS	1	445	.	+	1	ID=cds-C9F05_RS07075;Parent=gene-C9F05_RS07075;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=ssaU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460387.1;locus_tag=C9F05_RS07075;partial=true;product=SPI-2 type III secretion system apparatus protein SsaU;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	604	680	.	-	.	ID=gene-C9F05_RS07080;Name=C9F05_RS07080;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS07080;old_locus_tag=C9F05_07230
NZ_PYKE01000098.1	tRNAscan-SE	tRNA	604	680	.	-	.	ID=rna-C9F05_RS07080;Parent=gene-C9F05_RS07080;anticodon=(pos:complement(644..646));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS07080;product=tRNA-Val
NZ_PYKE01000098.1	tRNAscan-SE	exon	604	680	.	-	.	ID=exon-C9F05_RS07080-1;Parent=rna-C9F05_RS07080;anticodon=(pos:complement(644..646));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS07080;product=tRNA-Val
NZ_PYKE01000098.1	RefSeq	gene	691	767	.	-	.	ID=gene-C9F05_RS07085;Name=C9F05_RS07085;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS07085;old_locus_tag=C9F05_07235
NZ_PYKE01000098.1	tRNAscan-SE	tRNA	691	767	.	-	.	ID=rna-C9F05_RS07085;Parent=gene-C9F05_RS07085;anticodon=(pos:complement(731..733));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS07085;product=tRNA-Val
NZ_PYKE01000098.1	tRNAscan-SE	exon	691	767	.	-	.	ID=exon-C9F05_RS07085-1;Parent=rna-C9F05_RS07085;anticodon=(pos:complement(731..733));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS07085;product=tRNA-Val
NZ_PYKE01000098.1	RefSeq	gene	919	2292	.	-	.	ID=gene-C9F05_RS07090;Name=mdtK;gbkey=Gene;gene=mdtK;gene_biotype=protein_coding;locus_tag=C9F05_RS07090;old_locus_tag=C9F05_07240
NZ_PYKE01000098.1	Protein Homology	CDS	919	2292	.	-	0	ID=cds-WP_001175077.1;Parent=gene-C9F05_RS07090;Dbxref=GenBank:WP_001175077.1;Name=WP_001175077.1;gbkey=CDS;gene=mdtK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460388.2;locus_tag=C9F05_RS07090;product=multidrug efflux MATE transporter MdtK;protein_id=WP_001175077.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	2509	3150	.	+	.	ID=gene-C9F05_RS07095;Name=C9F05_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07095;old_locus_tag=C9F05_07245
NZ_PYKE01000098.1	Protein Homology	CDS	2509	3150	.	+	0	ID=cds-WP_000493971.1;Parent=gene-C9F05_RS07095;Dbxref=GenBank:WP_000493971.1;Name=WP_000493971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460389.1;locus_tag=C9F05_RS07095;product=riboflavin synthase;protein_id=WP_000493971.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	3192	4340	.	-	.	ID=gene-C9F05_RS07100;Name=cfa;gbkey=Gene;gene=cfa;gene_biotype=protein_coding;locus_tag=C9F05_RS07100;old_locus_tag=C9F05_07250
NZ_PYKE01000098.1	Protein Homology	CDS	3192	4340	.	-	0	ID=cds-WP_000098879.1;Parent=gene-C9F05_RS07100;Dbxref=GenBank:WP_000098879.1;Name=WP_000098879.1;gbkey=CDS;gene=cfa;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460390.1;locus_tag=C9F05_RS07100;product=cyclopropane fatty acyl phospholipid synthase;protein_id=WP_000098879.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	4630	5835	.	-	.	ID=gene-C9F05_RS07105;Name=punC;gbkey=Gene;gene=punC;gene_biotype=protein_coding;gene_synonym=ydhC;locus_tag=C9F05_RS07105;old_locus_tag=C9F05_07255
NZ_PYKE01000098.1	Protein Homology	CDS	4630	5835	.	-	0	ID=cds-WP_001182316.1;Parent=gene-C9F05_RS07105;Dbxref=GenBank:WP_001182316.1;Name=WP_001182316.1;Ontology_term=GO:1990961,GO:0042910,GO:0016020;gbkey=CDS;gene=punC;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460391.1;locus_tag=C9F05_RS07105;product=purine nucleoside transporter PunC;protein_id=WP_001182316.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	5948	6880	.	+	.	ID=gene-C9F05_RS07110;Name=punR;gbkey=Gene;gene=punR;gene_biotype=protein_coding;locus_tag=C9F05_RS07110;old_locus_tag=C9F05_07260
NZ_PYKE01000098.1	Protein Homology	CDS	5948	6880	.	+	0	ID=cds-WP_000269523.1;Parent=gene-C9F05_RS07110;Dbxref=GenBank:WP_000269523.1;Name=WP_000269523.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=punR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460392.1;locus_tag=C9F05_RS07110;product=DNA-binding transcriptional activator PunR;protein_id=WP_000269523.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	6877	7902	.	-	.	ID=gene-C9F05_RS07115;Name=purR;gbkey=Gene;gene=purR;gene_biotype=protein_coding;locus_tag=C9F05_RS07115;old_locus_tag=C9F05_07265
NZ_PYKE01000098.1	Protein Homology	CDS	6877	7902	.	-	0	ID=cds-WP_000190992.1;Parent=gene-C9F05_RS07115;Dbxref=GenBank:WP_000190992.1;Name=WP_000190992.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=purR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127190.1;locus_tag=C9F05_RS07115;product=HTH-type transcriptional repressor PurR;protein_id=WP_000190992.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	8198	8287	.	+	.	ID=gene-C9F05_RS07120;Name=cydH;gbkey=Gene;gene=cydH;gene_biotype=protein_coding;gene_synonym=ynhF;locus_tag=C9F05_RS07120;old_locus_tag=C9F05_07275
NZ_PYKE01000098.1	Protein Homology	CDS	8198	8287	.	+	0	ID=cds-WP_000102277.1;Parent=gene-C9F05_RS07120;Dbxref=GenBank:WP_000102277.1;Name=WP_000102277.1;gbkey=CDS;gene=cydH;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165321.1;locus_tag=C9F05_RS07120;product=cytochrome bd-I oxidase subunit CydH;protein_id=WP_000102277.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	8370	8951	.	-	.	ID=gene-C9F05_RS07125;Name=sodB;gbkey=Gene;gene=sodB;gene_biotype=protein_coding;locus_tag=C9F05_RS07125;old_locus_tag=C9F05_07280
NZ_PYKE01000098.1	Protein Homology	CDS	8370	8951	.	-	0	ID=cds-WP_000007299.1;Parent=gene-C9F05_RS07125;Dbxref=GenBank:WP_000007299.1;Name=WP_000007299.1;Ontology_term=GO:0006801,GO:0004784,GO:0046872;gbkey=CDS;gene=sodB;go_function=superoxide dismutase activity|0004784||IEA,metal ion binding|0046872||IEA;go_process=superoxide metabolic process|0006801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460394.1;locus_tag=C9F05_RS07125;product=superoxide dismutase [Fe];protein_id=WP_000007299.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	9078	9899	.	-	.	ID=gene-C9F05_RS07130;Name=C9F05_RS07130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07130;old_locus_tag=C9F05_07285
NZ_PYKE01000098.1	Protein Homology	CDS	9078	9899	.	-	0	ID=cds-WP_001537211.1;Parent=gene-C9F05_RS07130;Dbxref=GenBank:WP_001537211.1;Name=WP_001537211.1;Ontology_term=GO:0000270,GO:0006508,GO:0008233,GO:0008234,GO:0016787;gbkey=CDS;go_function=peptidase activity|0008233||IEA,cysteine-type peptidase activity|0008234||IEA,hydrolase activity|0016787||IEA;go_process=peptidoglycan metabolic process|0000270||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310391.1;locus_tag=C9F05_RS07130;product=C40 family peptidase;protein_id=WP_001537211.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	10235	10582	.	+	.	ID=gene-C9F05_RS07135;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=C9F05_RS07135;old_locus_tag=C9F05_07290
NZ_PYKE01000098.1	Protein Homology	CDS	10235	10582	.	+	0	ID=cds-WP_000108176.1;Parent=gene-C9F05_RS07135;Dbxref=GenBank:WP_000108176.1;Name=WP_000108176.1;gbkey=CDS;gene=grxD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460396.1;locus_tag=C9F05_RS07135;product=monothiol glutaredoxin 4;protein_id=WP_000108176.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	10660	11307	.	-	.	ID=gene-C9F05_RS07140;Name=rnt;gbkey=Gene;gene=rnt;gene_biotype=protein_coding;locus_tag=C9F05_RS07140;old_locus_tag=C9F05_07295
NZ_PYKE01000098.1	Protein Homology	CDS	10660	11307	.	-	0	ID=cds-WP_001282272.1;Parent=gene-C9F05_RS07140;Dbxref=GenBank:WP_001282272.1;Name=WP_001282272.1;Ontology_term=GO:0006364,GO:0042780,GO:0016896;gbkey=CDS;gene=rnt;go_function=RNA exonuclease activity%2C producing 5'-phosphomonoesters|0016896||IEA;go_process=rRNA processing|0006364||IEA,tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460397.1;locus_tag=C9F05_RS07140;product=ribonuclease T;protein_id=WP_001282272.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	11408	11815	.	-	.	ID=gene-C9F05_RS07145;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;locus_tag=C9F05_RS07145;old_locus_tag=C9F05_07300
NZ_PYKE01000098.1	Protein Homology	CDS	11408	11815	.	-	0	ID=cds-WP_001237787.1;Parent=gene-C9F05_RS07145;Dbxref=GenBank:WP_001237787.1;Name=WP_001237787.1;gbkey=CDS;gene=gloA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008500591.1;locus_tag=C9F05_RS07145;product=lactoylglutathione lyase;protein_id=WP_001237787.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	11884	12981	.	-	.	ID=gene-C9F05_RS07150;Name=C9F05_RS07150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07150;old_locus_tag=C9F05_07305
NZ_PYKE01000098.1	Protein Homology	CDS	11884	12981	.	-	0	ID=cds-WP_135370145.1;Parent=gene-C9F05_RS07150;Dbxref=GenBank:WP_135370145.1;Name=WP_135370145.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460399.1;locus_tag=C9F05_RS07150;product=alkene reductase;protein_id=WP_135370145.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	13040	13639	.	-	.	ID=gene-C9F05_RS07155;Name=C9F05_RS07155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07155;old_locus_tag=C9F05_07310
NZ_PYKE01000098.1	Protein Homology	CDS	13040	13639	.	-	0	ID=cds-WP_001041823.1;Parent=gene-C9F05_RS07155;Dbxref=GenBank:WP_001041823.1;Name=WP_001041823.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460400.1;locus_tag=C9F05_RS07155;product=TetR/AcrR family transcriptional regulator;protein_id=WP_001041823.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	13742	13981	.	+	.	ID=gene-C9F05_RS07160;Name=C9F05_RS07160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07160;old_locus_tag=C9F05_07315
NZ_PYKE01000098.1	Protein Homology	CDS	13742	13981	.	+	0	ID=cds-WP_001519323.1;Parent=gene-C9F05_RS07160;Dbxref=GenBank:WP_001519323.1;Name=WP_001519323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460401.1;locus_tag=C9F05_RS07160;product=DUF1289 domain-containing protein;protein_id=WP_001519323.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	14032	14928	.	+	.	ID=gene-C9F05_RS07165;Name=C9F05_RS07165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07165;old_locus_tag=C9F05_07320
NZ_PYKE01000098.1	Protein Homology	CDS	14032	14928	.	+	0	ID=cds-WP_000250716.1;Parent=gene-C9F05_RS07165;Dbxref=GenBank:WP_000250716.1;Name=WP_000250716.1;Ontology_term=GO:0016491,GO:0050661;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460402.1;locus_tag=C9F05_RS07165;product=aldo/keto reductase;protein_id=WP_000250716.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	15008	15529	.	+	.	ID=gene-C9F05_RS07170;Name=sodC2;gbkey=Gene;gene=sodC2;gene_biotype=protein_coding;gene_synonym=sodCII;locus_tag=C9F05_RS07170;old_locus_tag=C9F05_07325
NZ_PYKE01000098.1	Protein Homology	CDS	15008	15529	.	+	0	ID=cds-WP_000826813.1;Parent=gene-C9F05_RS07170;Dbxref=GenBank:WP_000826813.1;Name=WP_000826813.1;gbkey=CDS;gene=sodC2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460403.1;locus_tag=C9F05_RS07170;product=superoxide dismutase [Cu-Zn] SodC2;protein_id=WP_000826813.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	15505	17544	.	-	.	ID=gene-C9F05_RS07175;Name=C9F05_RS07175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07175;old_locus_tag=C9F05_07330
NZ_PYKE01000098.1	Protein Homology	CDS	15505	17544	.	-	0	ID=cds-WP_000777626.1;Parent=gene-C9F05_RS07175;Dbxref=GenBank:WP_000777626.1;Name=WP_000777626.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460404.1;locus_tag=C9F05_RS07175;product=FUSC family protein;protein_id=WP_000777626.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	17544	18404	.	-	.	ID=gene-C9F05_RS07180;Name=C9F05_RS07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07180;old_locus_tag=C9F05_07335
NZ_PYKE01000098.1	Protein Homology	CDS	17544	18404	.	-	0	ID=cds-WP_001538147.1;Parent=gene-C9F05_RS07180;Dbxref=GenBank:WP_001538147.1;Name=WP_001538147.1;Ontology_term=GO:0006810,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012218841.1;locus_tag=C9F05_RS07180;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_001538147.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	18407	18643	.	-	.	ID=gene-C9F05_RS07185;Name=C9F05_RS07185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07185;old_locus_tag=C9F05_07340
NZ_PYKE01000098.1	Protein Homology	CDS	18407	18643	.	-	0	ID=cds-WP_000649755.1;Parent=gene-C9F05_RS07185;Dbxref=GenBank:WP_000649755.1;Name=WP_000649755.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460406.1;locus_tag=C9F05_RS07185;product=DUF1656 domain-containing protein;protein_id=WP_000649755.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	18838	19278	.	+	.	ID=gene-C9F05_RS07190;Name=slyA;gbkey=Gene;gene=slyA;gene_biotype=protein_coding;locus_tag=C9F05_RS07190;old_locus_tag=C9F05_07345
NZ_PYKE01000098.1	Protein Homology	CDS	18838	19278	.	+	0	ID=cds-WP_000764552.1;Parent=gene-C9F05_RS07190;Dbxref=GenBank:WP_000764552.1;Name=WP_000764552.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=slyA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460407.3;locus_tag=C9F05_RS07190;product=transcriptional regulator SlyA;protein_id=WP_000764552.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	19326	19793	.	-	.	ID=gene-C9F05_RS07195;Name=slyB;gbkey=Gene;gene=slyB;gene_biotype=protein_coding;locus_tag=C9F05_RS07195;old_locus_tag=C9F05_07350
NZ_PYKE01000098.1	Protein Homology	CDS	19326	19793	.	-	0	ID=cds-WP_000621211.1;Parent=gene-C9F05_RS07195;Dbxref=GenBank:WP_000621211.1;Name=WP_000621211.1;gbkey=CDS;gene=slyB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460408.1;locus_tag=C9F05_RS07195;product=outer membrane lipoprotein SlyB;protein_id=WP_000621211.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	20065	21186	.	+	.	ID=gene-C9F05_RS07200;Name=anmK;gbkey=Gene;gene=anmK;gene_biotype=protein_coding;locus_tag=C9F05_RS07200;old_locus_tag=C9F05_07355
NZ_PYKE01000098.1	Protein Homology	CDS	20065	21186	.	+	0	ID=cds-WP_000835021.1;Parent=gene-C9F05_RS07200;Dbxref=GenBank:WP_000835021.1;Name=WP_000835021.1;gbkey=CDS;gene=anmK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460409.1;locus_tag=C9F05_RS07200;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_000835021.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	21274	21603	.	+	.	ID=gene-C9F05_RS07205;Name=mliC;gbkey=Gene;gene=mliC;gene_biotype=protein_coding;locus_tag=C9F05_RS07205;old_locus_tag=C9F05_07360
NZ_PYKE01000098.1	Protein Homology	CDS	21274	21603	.	+	0	ID=cds-WP_135370146.1;Parent=gene-C9F05_RS07205;Dbxref=GenBank:WP_135370146.1;Name=WP_135370146.1;gbkey=CDS;gene=mliC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460410.1;locus_tag=C9F05_RS07205;product=C-type lysozyme inhibitor;protein_id=WP_135370146.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	21662	22318	.	+	.	ID=gene-C9F05_RS07210;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;locus_tag=C9F05_RS07210;old_locus_tag=C9F05_07365
NZ_PYKE01000098.1	Protein Homology	CDS	21662	22318	.	+	0	ID=cds-WP_001282334.1;Parent=gene-C9F05_RS07210;Dbxref=GenBank:WP_001282334.1;Name=WP_001282334.1;Ontology_term=GO:0008615,GO:0004733,GO:0010181;gbkey=CDS;gene=pdxH;go_function=pyridoxamine phosphate oxidase activity|0004733||IEA,FMN binding|0010181||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127173.1;locus_tag=C9F05_RS07210;product=pyridoxamine 5'-phosphate oxidase;protein_id=WP_001282334.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	22445	23719	.	+	.	ID=gene-C9F05_RS07215;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=C9F05_RS07215;old_locus_tag=C9F05_07370
NZ_PYKE01000098.1	Protein Homology	CDS	22445	23719	.	+	0	ID=cds-WP_000168626.1;Parent=gene-C9F05_RS07215;Dbxref=GenBank:WP_000168626.1;Name=WP_000168626.1;Ontology_term=GO:0006437,GO:0000166,GO:0004831,GO:0005524;gbkey=CDS;gene=tyrS;go_function=nucleotide binding|0000166||IEA,tyrosine-tRNA ligase activity|0004831||IEA,ATP binding|0005524||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460412.1;locus_tag=C9F05_RS07215;product=tyrosine--tRNA ligase;protein_id=WP_000168626.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	23779	24639	.	+	.	ID=gene-C9F05_RS07220;Name=pdxY;gbkey=Gene;gene=pdxY;gene_biotype=protein_coding;locus_tag=C9F05_RS07220;old_locus_tag=C9F05_07375
NZ_PYKE01000098.1	Protein Homology	CDS	23779	24639	.	+	0	ID=cds-WP_135370147.1;Parent=gene-C9F05_RS07220;Dbxref=GenBank:WP_135370147.1;Name=WP_135370147.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxY;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460413.1;locus_tag=C9F05_RS07220;product=pyridoxal kinase PdxY;protein_id=WP_135370147.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	24698	25303	.	-	.	ID=gene-C9F05_RS07225;Name=gstA;gbkey=Gene;gene=gstA;gene_biotype=protein_coding;locus_tag=C9F05_RS07225;old_locus_tag=C9F05_07380
NZ_PYKE01000098.1	Protein Homology	CDS	24698	25303	.	-	0	ID=cds-WP_000765727.1;Parent=gene-C9F05_RS07225;Dbxref=GenBank:WP_000765727.1;Name=WP_000765727.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=gstA;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460414.1;locus_tag=C9F05_RS07225;product=glutathione transferase GstA;protein_id=WP_000765727.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	25408	26913	.	-	.	ID=gene-C9F05_RS07230;Name=dtpA;gbkey=Gene;gene=dtpA;gene_biotype=protein_coding;locus_tag=C9F05_RS07230;old_locus_tag=C9F05_07385
NZ_PYKE01000098.1	Protein Homology	CDS	25408	26913	.	-	0	ID=cds-WP_000100911.1;Parent=gene-C9F05_RS07230;Dbxref=GenBank:WP_000100911.1;Name=WP_000100911.1;Ontology_term=GO:0015833,GO:0055085,GO:1904680,GO:0016020;gbkey=CDS;gene=dtpA;go_component=membrane|0016020||IEA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460415.1;locus_tag=C9F05_RS07230;product=dipeptide/tripeptide permease DtpA;protein_id=WP_000100911.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	27515	28150	.	-	.	ID=gene-C9F05_RS07235;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=C9F05_RS07235;old_locus_tag=C9F05_07390
NZ_PYKE01000098.1	Protein Homology	CDS	27515	28150	.	-	0	ID=cds-WP_001030318.1;Parent=gene-C9F05_RS07235;Dbxref=GenBank:WP_001030318.1;Name=WP_001030318.1;Ontology_term=GO:0006284,GO:0003906;gbkey=CDS;gene=nth;go_function=DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460416.1;locus_tag=C9F05_RS07235;product=endonuclease III;protein_id=WP_001030318.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	28150	28842	.	-	.	ID=gene-C9F05_RS07240;Name=C9F05_RS07240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07240;old_locus_tag=C9F05_07395
NZ_PYKE01000098.1	Protein Homology	CDS	28150	28842	.	-	0	ID=cds-WP_001289628.1;Parent=gene-C9F05_RS07240;Dbxref=GenBank:WP_001289628.1;Name=WP_001289628.1;Ontology_term=GO:0022900;gbkey=CDS;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460417.1;locus_tag=C9F05_RS07240;product=electron transport complex subunit E;protein_id=WP_001289628.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	28845	29465	.	-	.	ID=gene-C9F05_RS07245;Name=rsxG;gbkey=Gene;gene=rsxG;gene_biotype=protein_coding;locus_tag=C9F05_RS07245;old_locus_tag=C9F05_07400
NZ_PYKE01000098.1	Protein Homology	CDS	28845	29465	.	-	0	ID=cds-WP_000920822.1;Parent=gene-C9F05_RS07245;Dbxref=GenBank:WP_000920822.1;Name=WP_000920822.1;Ontology_term=GO:0022900,GO:0009055,GO:0010181,GO:0016020;gbkey=CDS;gene=rsxG;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460418.1;locus_tag=C9F05_RS07245;product=electron transport complex subunit RsxG;protein_id=WP_000920822.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	gene	29469	30527	.	-	.	ID=gene-C9F05_RS07250;Name=rsxD;gbkey=Gene;gene=rsxD;gene_biotype=protein_coding;locus_tag=C9F05_RS07250;old_locus_tag=C9F05_07405
NZ_PYKE01000098.1	Protein Homology	CDS	29469	30527	.	-	0	ID=cds-WP_000231891.1;Parent=gene-C9F05_RS07250;Dbxref=GenBank:WP_000231891.1;Name=WP_000231891.1;Ontology_term=GO:0022900,GO:0055085,GO:0016020;gbkey=CDS;gene=rsxD;go_component=membrane|0016020||IEA;go_process=electron transport chain|0022900||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460419.1;locus_tag=C9F05_RS07250;product=electron transport complex subunit RsxD;protein_id=WP_000231891.1;transl_table=11
NZ_PYKE01000098.1	RefSeq	pseudogene	30528	30653	.	-	.	ID=gene-C9F05_RS07255;Name=C9F05_RS07255;end_range=30653,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS07255;old_locus_tag=C9F05_07410;partial=true;pseudo=true
NZ_PYKE01000098.1	Protein Homology	CDS	30528	30653	.	-	0	ID=cds-C9F05_RS07255;Parent=gene-C9F05_RS07255;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=30653,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460420.1;locus_tag=C9F05_RS07255;partial=true;product=electron transporter RnfC;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000274.1 1 4518
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000274.1	RefSeq	region	1	4518	.	+	.	ID=NZ_PYKE01000274.1:1..4518;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000274.1	RefSeq	gene	122	385	.	+	.	ID=gene-C9F05_RS18185;Name=yhcN;gbkey=Gene;gene=yhcN;gene_biotype=protein_coding;locus_tag=C9F05_RS18185;old_locus_tag=C9F05_18710
NZ_PYKE01000274.1	Protein Homology	CDS	122	385	.	+	0	ID=cds-WP_000695693.1;Parent=gene-C9F05_RS18185;Dbxref=GenBank:WP_000695693.1;Name=WP_000695693.1;gbkey=CDS;gene=yhcN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462271.1;locus_tag=C9F05_RS18185;product=peroxide/acid stress response protein YhcN;protein_id=WP_000695693.1;transl_table=11
NZ_PYKE01000274.1	RefSeq	gene	489	755	.	+	.	ID=gene-C9F05_RS18190;Name=yhcN-B;gbkey=Gene;gene=yhcN-B;gene_biotype=protein_coding;locus_tag=C9F05_RS18190;old_locus_tag=C9F05_18715
NZ_PYKE01000274.1	Protein Homology	CDS	489	755	.	+	0	ID=cds-WP_000853277.1;Parent=gene-C9F05_RS18190;Dbxref=GenBank:WP_000853277.1;Name=WP_000853277.1;gbkey=CDS;gene=yhcN-B;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462272.1;locus_tag=C9F05_RS18190;product=DUF1471 family stress response protein YhcN-B;protein_id=WP_000853277.1;transl_table=11
NZ_PYKE01000274.1	RefSeq	gene	815	1087	.	-	.	ID=gene-C9F05_RS18195;Name=C9F05_RS18195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18195;old_locus_tag=C9F05_18720
NZ_PYKE01000274.1	Protein Homology	CDS	815	1087	.	-	0	ID=cds-WP_001103887.1;Parent=gene-C9F05_RS18195;Dbxref=GenBank:WP_001103887.1;Name=WP_001103887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462273.1;locus_tag=C9F05_RS18195;product=barstar family protein;protein_id=WP_001103887.1;transl_table=11
NZ_PYKE01000274.1	RefSeq	gene	1259	3226	.	-	.	ID=gene-C9F05_RS18200;Name=aaeB;gbkey=Gene;gene=aaeB;gene_biotype=protein_coding;locus_tag=C9F05_RS18200;old_locus_tag=C9F05_18725
NZ_PYKE01000274.1	Protein Homology	CDS	1259	3226	.	-	0	ID=cds-WP_020437906.1;Parent=gene-C9F05_RS18200;Dbxref=GenBank:WP_020437906.1;Name=WP_020437906.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=aaeB;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462274.1;locus_tag=C9F05_RS18200;product=p-hydroxybenzoic acid efflux pump subunit AaeB;protein_id=WP_020437906.1;transl_table=11
NZ_PYKE01000274.1	RefSeq	gene	3232	4164	.	-	.	ID=gene-C9F05_RS18205;Name=aaeA;gbkey=Gene;gene=aaeA;gene_biotype=protein_coding;locus_tag=C9F05_RS18205;old_locus_tag=C9F05_18730
NZ_PYKE01000274.1	Protein Homology	CDS	3232	4164	.	-	0	ID=cds-WP_000855134.1;Parent=gene-C9F05_RS18205;Dbxref=GenBank:WP_000855134.1;Name=WP_000855134.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=aaeA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462275.1;locus_tag=C9F05_RS18205;product=p-hydroxybenzoic acid efflux pump subunit AaeA;protein_id=WP_000855134.1;transl_table=11
NZ_PYKE01000274.1	RefSeq	gene	4172	4375	.	-	.	ID=gene-C9F05_RS18210;Name=aaeX;gbkey=Gene;gene=aaeX;gene_biotype=protein_coding;locus_tag=C9F05_RS18210;old_locus_tag=C9F05_18735
NZ_PYKE01000274.1	Protein Homology	CDS	4172	4375	.	-	0	ID=cds-WP_000051840.1;Parent=gene-C9F05_RS18210;Dbxref=GenBank:WP_000051840.1;Name=WP_000051840.1;gbkey=CDS;gene=aaeX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000051842.1;locus_tag=C9F05_RS18210;product=p-hydroxybenzoic acid efflux pump operon protein AaeX;protein_id=WP_000051840.1;transl_table=11
##sequence-region NZ_PYKE01000152.1 1 4496
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000152.1	RefSeq	region	1	4496	.	+	.	ID=NZ_PYKE01000152.1:1..4496;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000152.1	RefSeq	pseudogene	1	241	.	-	.	ID=gene-C9F05_RS10860;Name=C9F05_RS10860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS10860;old_locus_tag=C9F05_11145;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000152.1	Protein Homology	CDS	1	241	.	-	0	ID=cds-C9F05_RS10860;Parent=gene-C9F05_RS10860;Note=member of the iron-containing alcohol dehydrogenase family%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459594.1;locus_tag=C9F05_RS10860;partial=true;product=oxidoreductase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000152.1	RefSeq	gene	368	1528	.	+	.	ID=gene-C9F05_RS10865;Name=C9F05_RS10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10865;old_locus_tag=C9F05_11150
NZ_PYKE01000152.1	Protein Homology	CDS	368	1528	.	+	0	ID=cds-WP_001245592.1;Parent=gene-C9F05_RS10865;Dbxref=GenBank:WP_001245592.1;Name=WP_001245592.1;Ontology_term=GO:0008483,GO:0016740;gbkey=CDS;go_function=transaminase activity|0008483||IEA,transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459595.1;locus_tag=C9F05_RS10865;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_001245592.1;transl_table=11
NZ_PYKE01000152.1	RefSeq	gene	1529	2146	.	-	.	ID=gene-C9F05_RS10870;Name=C9F05_RS10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10870;old_locus_tag=C9F05_11155
NZ_PYKE01000152.1	Protein Homology	CDS	1529	2146	.	-	0	ID=cds-WP_001164756.1;Parent=gene-C9F05_RS10870;Dbxref=GenBank:WP_001164756.1;Name=WP_001164756.1;Ontology_term=GO:0071453,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cellular response to oxygen levels|0071453||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459596.1;locus_tag=C9F05_RS10870;product=IbrB-like domain-containing protein;protein_id=WP_001164756.1;transl_table=11
NZ_PYKE01000152.1	RefSeq	gene	2119	3354	.	-	.	ID=gene-C9F05_RS10875;Name=C9F05_RS10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10875;old_locus_tag=C9F05_11160
NZ_PYKE01000152.1	Protein Homology	CDS	2119	3354	.	-	0	ID=cds-WP_000118139.1;Parent=gene-C9F05_RS10875;Dbxref=GenBank:WP_000118139.1;Name=WP_000118139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459597.1;locus_tag=C9F05_RS10875;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_000118139.1;transl_table=11
NZ_PYKE01000152.1	RefSeq	gene	3520	4422	.	-	.	ID=gene-C9F05_RS10880;Name=citR;gbkey=Gene;gene=citR;gene_biotype=protein_coding;gene_synonym=ybdO;locus_tag=C9F05_RS10880;old_locus_tag=C9F05_11165
NZ_PYKE01000152.1	Protein Homology	CDS	3520	4422	.	-	0	ID=cds-WP_000002497.1;Parent=gene-C9F05_RS10880;Dbxref=GenBank:WP_000002497.1;Name=WP_000002497.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=citR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459598.1;locus_tag=C9F05_RS10880;product=DNA-binding transcriptional repressor CitR;protein_id=WP_000002497.1;transl_table=11
##sequence-region NZ_PYKE01000131.1 1 4429
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000131.1	RefSeq	region	1	4429	.	+	.	ID=NZ_PYKE01000131.1:1..4429;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000131.1	RefSeq	gene	1	76	.	-	.	ID=gene-C9F05_RS23785;Name=C9F05_RS23785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23785;partial=true;start_range=.,1
NZ_PYKE01000131.1	Protein Homology	CDS	1	76	.	-	0	ID=cds-WP_223168382.1;Parent=gene-C9F05_RS23785;Dbxref=GenBank:WP_223168382.1;Name=WP_223168382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461995.3;locus_tag=C9F05_RS23785;partial=true;product=hypothetical protein;protein_id=WP_223168382.1;start_range=.,1;transl_table=11
NZ_PYKE01000131.1	RefSeq	gene	269	763	.	-	.	ID=gene-C9F05_RS09580;Name=C9F05_RS09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09580;old_locus_tag=C9F05_09830
NZ_PYKE01000131.1	Protein Homology	CDS	269	763	.	-	0	ID=cds-WP_023198643.1;Parent=gene-C9F05_RS09580;Dbxref=GenBank:WP_023198643.1;Name=WP_023198643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001839091.1;locus_tag=C9F05_RS09580;product=YhcH/YjgK/YiaL family protein;protein_id=WP_023198643.1;transl_table=11
NZ_PYKE01000131.1	RefSeq	gene	802	1809	.	-	.	ID=gene-C9F05_RS09585;Name=C9F05_RS09585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09585;old_locus_tag=C9F05_09835
NZ_PYKE01000131.1	Protein Homology	CDS	802	1809	.	-	0	ID=cds-WP_135370215.1;Parent=gene-C9F05_RS09585;Dbxref=GenBank:WP_135370215.1;Name=WP_135370215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461997.1;locus_tag=C9F05_RS09585;product=Ldh family oxidoreductase;protein_id=WP_135370215.1;transl_table=11
NZ_PYKE01000131.1	RefSeq	gene	1823	2839	.	-	.	ID=gene-C9F05_RS09590;Name=C9F05_RS09590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09590;old_locus_tag=C9F05_09840
NZ_PYKE01000131.1	Protein Homology	CDS	1823	2839	.	-	0	ID=cds-WP_000853907.1;Parent=gene-C9F05_RS09590;Dbxref=GenBank:WP_000853907.1;Name=WP_000853907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461998.1;locus_tag=C9F05_RS09590;product=zinc-binding alcohol dehydrogenase family protein;protein_id=WP_000853907.1;transl_table=11
NZ_PYKE01000131.1	RefSeq	gene	2842	4314	.	-	.	ID=gene-C9F05_RS09595;Name=C9F05_RS09595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09595;old_locus_tag=C9F05_09845
NZ_PYKE01000131.1	Protein Homology	CDS	2842	4314	.	-	0	ID=cds-WP_135370216.1;Parent=gene-C9F05_RS09595;Dbxref=GenBank:WP_135370216.1;Name=WP_135370216.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461999.1;locus_tag=C9F05_RS09595;product=mannitol dehydrogenase family protein;protein_id=WP_135370216.1;transl_table=11
##sequence-region NZ_PYKE01000215.1 1 4295
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000215.1	RefSeq	region	1	4295	.	+	.	ID=NZ_PYKE01000215.1:1..4295;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000215.1	RefSeq	gene	154	732	.	-	.	ID=gene-C9F05_RS13870;Name=C9F05_RS13870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13870;old_locus_tag=C9F05_14265
NZ_PYKE01000215.1	Protein Homology	CDS	154	732	.	-	0	ID=cds-WP_000121044.1;Parent=gene-C9F05_RS13870;Dbxref=GenBank:WP_000121044.1;Name=WP_000121044.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460534.1;locus_tag=C9F05_RS13870;product=TetR family transcriptional regulator;protein_id=WP_000121044.1;transl_table=11
NZ_PYKE01000215.1	RefSeq	gene	850	2337	.	+	.	ID=gene-C9F05_RS13875;Name=smvA;gbkey=Gene;gene=smvA;gene_biotype=protein_coding;locus_tag=C9F05_RS13875;old_locus_tag=C9F05_14270
NZ_PYKE01000215.1	Protein Homology	CDS	850	2337	.	+	0	ID=cds-WP_126524112.1;Parent=gene-C9F05_RS13875;Dbxref=GenBank:WP_126524112.1;Name=WP_126524112.1;gbkey=CDS;gene=smvA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460533.1;locus_tag=C9F05_RS13875;product=methyl viologen efflux MFS transporter SmvA;protein_id=WP_126524112.1;transl_table=11
NZ_PYKE01000215.1	RefSeq	gene	2362	2742	.	-	.	ID=gene-C9F05_RS13880;Name=C9F05_RS13880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13880;old_locus_tag=C9F05_14275
NZ_PYKE01000215.1	Protein Homology	CDS	2362	2742	.	-	0	ID=cds-WP_014343841.1;Parent=gene-C9F05_RS13880;Dbxref=GenBank:WP_014343841.1;Name=WP_014343841.1;Ontology_term=GO:0016846,GO:0046872;gbkey=CDS;go_function=carbon-sulfur lyase activity|0016846||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460532.3;locus_tag=C9F05_RS13880;product=GFA family protein;protein_id=WP_014343841.1;transl_table=11
NZ_PYKE01000215.1	RefSeq	gene	2886	3968	.	-	.	ID=gene-C9F05_RS13885;Name=ompD;gbkey=Gene;gene=ompD;gene_biotype=protein_coding;locus_tag=C9F05_RS13885;old_locus_tag=C9F05_14280
NZ_PYKE01000215.1	Protein Homology	CDS	2886	3968	.	-	0	ID=cds-WP_031605333.1;Parent=gene-C9F05_RS13885;Dbxref=GenBank:WP_031605333.1;Name=WP_031605333.1;gbkey=CDS;gene=ompD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460531.1;locus_tag=C9F05_RS13885;product=porin OmpD;protein_id=WP_031605333.1;transl_table=11
##sequence-region NZ_PYKE01000339.1 1 30283
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000339.1	RefSeq	region	1	30283	.	+	.	ID=NZ_PYKE01000339.1:1..30283;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000339.1	RefSeq	gene	98	228	.	+	.	ID=gene-C9F05_RS22745;Name=C9F05_RS22745;gbkey=Gene;gene_biotype=ncRNA;locus_tag=C9F05_RS22745;old_locus_tag=C9F05_23340
NZ_PYKE01000339.1	cmsearch	ncRNA	98	228	.	+	.	ID=rna-C9F05_RS22745;Parent=gene-C9F05_RS22745;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS22745;product=RtT sRNA
NZ_PYKE01000339.1	cmsearch	exon	98	228	.	+	.	ID=exon-C9F05_RS22745-1;Parent=rna-C9F05_RS22745;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS22745;product=RtT sRNA
NZ_PYKE01000339.1	RefSeq	gene	331	1860	.	-	.	ID=gene-C9F05_RS22750;Name=C9F05_RS22750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22750;old_locus_tag=C9F05_23345
NZ_PYKE01000339.1	Protein Homology	CDS	331	1860	.	-	0	ID=cds-WP_135370665.1;Parent=gene-C9F05_RS22750;Dbxref=GenBank:WP_135370665.1;Name=WP_135370665.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460716.1;locus_tag=C9F05_RS22750;product=tetratricopeptide repeat protein;protein_id=WP_135370665.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	2102	2779	.	-	.	ID=gene-C9F05_RS22760;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=C9F05_RS22760;old_locus_tag=C9F05_23355
NZ_PYKE01000339.1	Protein Homology	CDS	2102	2779	.	-	0	ID=cds-WP_000545594.1;Parent=gene-C9F05_RS22760;Dbxref=GenBank:WP_000545594.1;Name=WP_000545594.1;Ontology_term=GO:0019645,GO:0008940,GO:0009325;gbkey=CDS;gene=narI;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460717.1;locus_tag=C9F05_RS22760;product=respiratory nitrate reductase subunit gamma;protein_id=WP_000545594.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	2779	3489	.	-	.	ID=gene-C9F05_RS22765;Name=narJ;gbkey=Gene;gene=narJ;gene_biotype=protein_coding;locus_tag=C9F05_RS22765;old_locus_tag=C9F05_23360
NZ_PYKE01000339.1	Protein Homology	CDS	2779	3489	.	-	0	ID=cds-WP_080194682.1;Parent=gene-C9F05_RS22765;Dbxref=GenBank:WP_080194682.1;Name=WP_080194682.1;Ontology_term=GO:0051131,GO:0051082;gbkey=CDS;gene=narJ;go_function=unfolded protein binding|0051082||IEA;go_process=chaperone-mediated protein complex assembly|0051131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460718.1;locus_tag=C9F05_RS22765;product=nitrate reductase molybdenum cofactor assembly chaperone;protein_id=WP_080194682.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	3486	5021	.	-	.	ID=gene-C9F05_RS22770;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=C9F05_RS22770;old_locus_tag=C9F05_23365
NZ_PYKE01000339.1	Protein Homology	CDS	3486	5021	.	-	0	ID=cds-WP_000702629.1;Parent=gene-C9F05_RS22770;Dbxref=GenBank:WP_000702629.1;Name=WP_000702629.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;gene=narH;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460719.1;locus_tag=C9F05_RS22770;product=nitrate reductase subunit beta;protein_id=WP_000702629.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	5018	8761	.	-	.	ID=gene-C9F05_RS22775;Name=C9F05_RS22775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22775;old_locus_tag=C9F05_23370
NZ_PYKE01000339.1	Protein Homology	CDS	5018	8761	.	-	0	ID=cds-WP_135370664.1;Parent=gene-C9F05_RS22775;Dbxref=GenBank:WP_135370664.1;Name=WP_135370664.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460720.1;locus_tag=C9F05_RS22775;product=nitrate reductase subunit alpha;protein_id=WP_135370664.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	9149	10546	.	-	.	ID=gene-C9F05_RS22780;Name=narK;gbkey=Gene;gene=narK;gene_biotype=protein_coding;locus_tag=C9F05_RS22780;old_locus_tag=C9F05_23375
NZ_PYKE01000339.1	Protein Homology	CDS	9149	10546	.	-	0	ID=cds-WP_000019848.1;Parent=gene-C9F05_RS22780;Dbxref=GenBank:WP_000019848.1;Name=WP_000019848.1;gbkey=CDS;gene=narK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460721.1;locus_tag=C9F05_RS22780;product=nitrate transporter NarK;protein_id=WP_000019848.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	10887	12683	.	+	.	ID=gene-C9F05_RS22790;Name=narX;gbkey=Gene;gene=narX;gene_biotype=protein_coding;locus_tag=C9F05_RS22790;old_locus_tag=C9F05_23385
NZ_PYKE01000339.1	Protein Homology	CDS	10887	12683	.	+	0	ID=cds-WP_000476244.1;Parent=gene-C9F05_RS22790;Dbxref=GenBank:WP_000476244.1;Name=WP_000476244.1;Ontology_term=GO:0000160,GO:0000155,GO:0046983,GO:0016020;gbkey=CDS;gene=narX;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein dimerization activity|0046983||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460722.1;locus_tag=C9F05_RS22790;product=nitrate/nitrite two-component system sensor histidine kinase NarX;protein_id=WP_000476244.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	12676	13326	.	+	.	ID=gene-C9F05_RS22795;Name=narL;gbkey=Gene;gene=narL;gene_biotype=protein_coding;locus_tag=C9F05_RS22795;old_locus_tag=C9F05_23390
NZ_PYKE01000339.1	Protein Homology	CDS	12676	13326	.	+	0	ID=cds-WP_001064598.1;Parent=gene-C9F05_RS22795;Dbxref=GenBank:WP_001064598.1;Name=WP_001064598.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=narL;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460723.1;locus_tag=C9F05_RS22795;product=two-component system response regulator NarL;protein_id=WP_001064598.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	13327	14751	.	-	.	ID=gene-C9F05_RS22800;Name=C9F05_RS22800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22800;old_locus_tag=C9F05_23395
NZ_PYKE01000339.1	Protein Homology	CDS	13327	14751	.	-	0	ID=cds-WP_045900837.1;Parent=gene-C9F05_RS22800;Dbxref=GenBank:WP_045900837.1;Name=WP_045900837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460724.3;locus_tag=C9F05_RS22800;product=YchO/YchP family invasin;protein_id=WP_045900837.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	14928	15281	.	+	.	ID=gene-C9F05_RS22805;Name=C9F05_RS22805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22805;old_locus_tag=C9F05_23400
NZ_PYKE01000339.1	Protein Homology	CDS	14928	15281	.	+	0	ID=cds-WP_001179794.1;Parent=gene-C9F05_RS22805;Dbxref=GenBank:WP_001179794.1;Name=WP_001179794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460725.1;locus_tag=C9F05_RS22805;product=DsrE/DsrF/TusD sulfur relay family protein;protein_id=WP_001179794.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	15361	15591	.	-	.	ID=gene-C9F05_RS22810;Name=chaB;gbkey=Gene;gene=chaB;gene_biotype=protein_coding;locus_tag=C9F05_RS22810;old_locus_tag=C9F05_23405
NZ_PYKE01000339.1	Protein Homology	CDS	15361	15591	.	-	0	ID=cds-WP_001146392.1;Parent=gene-C9F05_RS22810;Dbxref=GenBank:WP_001146392.1;Name=WP_001146392.1;gbkey=CDS;gene=chaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460726.1;locus_tag=C9F05_RS22810;product=putative cation transport regulator ChaB;protein_id=WP_001146392.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	15858	16958	.	+	.	ID=gene-C9F05_RS22815;Name=chaA;gbkey=Gene;gene=chaA;gene_biotype=protein_coding;locus_tag=C9F05_RS22815;old_locus_tag=C9F05_23410
NZ_PYKE01000339.1	Protein Homology	CDS	15858	16958	.	+	0	ID=cds-WP_000148418.1;Parent=gene-C9F05_RS22815;Dbxref=GenBank:WP_000148418.1;Name=WP_000148418.1;gbkey=CDS;gene=chaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460727.1;locus_tag=C9F05_RS22815;product=sodium-potassium/proton antiporter ChaA;protein_id=WP_000148418.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	17012	17866	.	-	.	ID=gene-C9F05_RS22820;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=C9F05_RS22820;old_locus_tag=C9F05_23415
NZ_PYKE01000339.1	Protein Homology	CDS	17012	17866	.	-	0	ID=cds-WP_000811046.1;Parent=gene-C9F05_RS22820;Dbxref=GenBank:WP_000811046.1;Name=WP_000811046.1;Ontology_term=GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460728.1;locus_tag=C9F05_RS22820;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_000811046.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	17904	18713	.	-	.	ID=gene-C9F05_RS22825;Name=sirB1;gbkey=Gene;gene=sirB1;gene_biotype=protein_coding;locus_tag=C9F05_RS22825;old_locus_tag=C9F05_23420
NZ_PYKE01000339.1	Protein Homology	CDS	17904	18713	.	-	0	ID=cds-WP_001257065.1;Parent=gene-C9F05_RS22825;Dbxref=GenBank:WP_001257065.1;Name=WP_001257065.1;gbkey=CDS;gene=sirB1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460729.1;locus_tag=C9F05_RS22825;product=invasion regulator SirB1;protein_id=WP_001257065.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	18717	19106	.	-	.	ID=gene-C9F05_RS22830;Name=sirB2;gbkey=Gene;gene=sirB2;gene_biotype=protein_coding;locus_tag=C9F05_RS22830;old_locus_tag=C9F05_23425
NZ_PYKE01000339.1	Protein Homology	CDS	18717	19106	.	-	0	ID=cds-WP_000150667.1;Parent=gene-C9F05_RS22830;Dbxref=GenBank:WP_000150667.1;Name=WP_000150667.1;gbkey=CDS;gene=sirB2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460730.1;locus_tag=C9F05_RS22830;product=invasion regulator SirB2;protein_id=WP_000150667.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	19103	19936	.	-	.	ID=gene-C9F05_RS22835;Name=prmC;gbkey=Gene;gene=prmC;gene_biotype=protein_coding;locus_tag=C9F05_RS22835;old_locus_tag=C9F05_23430
NZ_PYKE01000339.1	Protein Homology	CDS	19103	19936	.	-	0	ID=cds-WP_000347312.1;Parent=gene-C9F05_RS22835;Dbxref=GenBank:WP_000347312.1;Name=WP_000347312.1;Ontology_term=GO:0006412,GO:0018364,GO:0008757;gbkey=CDS;gene=prmC;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=translation|0006412||IEA,peptidyl-glutamine methylation|0018364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460731.1;locus_tag=C9F05_RS22835;product=peptide chain release factor N(5)-glutamine methyltransferase;protein_id=WP_000347312.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	19936	21018	.	-	.	ID=gene-C9F05_RS22840;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=C9F05_RS22840;old_locus_tag=C9F05_23435
NZ_PYKE01000339.1	Protein Homology	CDS	19936	21018	.	-	0	ID=cds-WP_023193328.1;Parent=gene-C9F05_RS22840;Dbxref=GenBank:WP_023193328.1;Name=WP_023193328.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfA;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012132158.1;locus_tag=C9F05_RS22840;product=peptide chain release factor 1;protein_id=WP_023193328.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	21059	22315	.	-	.	ID=gene-C9F05_RS22845;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=C9F05_RS22845;old_locus_tag=C9F05_23440
NZ_PYKE01000339.1	Protein Homology	CDS	21059	22315	.	-	0	ID=cds-WP_000173208.1;Parent=gene-C9F05_RS22845;Dbxref=GenBank:WP_000173208.1;Name=WP_000173208.1;Ontology_term=GO:0008883,GO:0050661;gbkey=CDS;gene=hemA;go_function=glutamyl-tRNA reductase activity|0008883||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041689438.1;locus_tag=C9F05_RS22845;product=glutamyl-tRNA reductase;protein_id=WP_000173208.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	22629	23252	.	+	.	ID=gene-C9F05_RS22850;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=C9F05_RS22850;old_locus_tag=C9F05_23445
NZ_PYKE01000339.1	Protein Homology	CDS	22629	23252	.	+	0	ID=cds-WP_000174484.1;Parent=gene-C9F05_RS22850;Dbxref=GenBank:WP_000174484.1;Name=WP_000174484.1;Ontology_term=GO:0015031,GO:0009279;gbkey=CDS;gene=lolB;go_component=cell outer membrane|0009279||IEA;go_process=protein transport|0015031||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460734.1;locus_tag=C9F05_RS22850;product=lipoprotein insertase outer membrane protein LolB;protein_id=WP_000174484.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	23249	24100	.	+	.	ID=gene-C9F05_RS22855;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=C9F05_RS22855;old_locus_tag=C9F05_23450
NZ_PYKE01000339.1	Protein Homology	CDS	23249	24100	.	+	0	ID=cds-WP_000988259.1;Parent=gene-C9F05_RS22855;Dbxref=GenBank:WP_000988259.1;Name=WP_000988259.1;Ontology_term=GO:0016114,GO:0050515;gbkey=CDS;gene=ispE;go_function=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity|0050515||IEA;go_process=terpenoid biosynthetic process|0016114||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460735.1;locus_tag=C9F05_RS22855;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=WP_000988259.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	24366	25313	.	+	.	ID=gene-C9F05_RS22860;Name=prs;gbkey=Gene;gene=prs;gene_biotype=protein_coding;locus_tag=C9F05_RS22860;old_locus_tag=C9F05_23455
NZ_PYKE01000339.1	Protein Homology	CDS	24366	25313	.	+	0	ID=cds-WP_001518537.1;Parent=gene-C9F05_RS22860;Dbxref=GenBank:WP_001518537.1;Name=WP_001518537.1;gbkey=CDS;gene=prs;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910407.1;locus_tag=C9F05_RS22860;product=ribose-phosphate diphosphokinase;protein_id=WP_001518537.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	25438	27123	.	+	.	ID=gene-C9F05_RS22865;Name=dauA;gbkey=Gene;gene=dauA;gene_biotype=protein_coding;locus_tag=C9F05_RS22865;old_locus_tag=C9F05_23460
NZ_PYKE01000339.1	Protein Homology	CDS	25438	27123	.	+	0	ID=cds-WP_001037182.1;Parent=gene-C9F05_RS22865;Dbxref=GenBank:WP_001037182.1;Name=WP_001037182.1;gbkey=CDS;gene=dauA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001525165.1;locus_tag=C9F05_RS22865;product=C4-dicarboxylic acid transporter DauA;protein_id=WP_001037182.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	27168	27446	.	-	.	ID=gene-C9F05_RS22870;Name=ychH;gbkey=Gene;gene=ychH;gene_biotype=protein_coding;locus_tag=C9F05_RS22870;old_locus_tag=C9F05_23465
NZ_PYKE01000339.1	Protein Homology	CDS	27168	27446	.	-	0	ID=cds-WP_000823878.1;Parent=gene-C9F05_RS22870;Dbxref=GenBank:WP_000823878.1;Name=WP_000823878.1;gbkey=CDS;gene=ychH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460738.1;locus_tag=C9F05_RS22870;product=stress-induced protein YchH;protein_id=WP_000823878.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	27722	28306	.	+	.	ID=gene-C9F05_RS22875;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=C9F05_RS22875;old_locus_tag=C9F05_23470
NZ_PYKE01000339.1	Protein Homology	CDS	27722	28306	.	+	0	ID=cds-WP_000985595.1;Parent=gene-C9F05_RS22875;Dbxref=GenBank:WP_000985595.1;Name=WP_000985595.1;Ontology_term=GO:0004045;gbkey=CDS;gene=pth;go_function=peptidyl-tRNA hydrolase activity|0004045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910438.1;locus_tag=C9F05_RS22875;product=aminoacyl-tRNA hydrolase;protein_id=WP_000985595.1;transl_table=11
NZ_PYKE01000339.1	RefSeq	gene	28423	29514	.	+	.	ID=gene-C9F05_RS22880;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=C9F05_RS22880;old_locus_tag=C9F05_23475
NZ_PYKE01000339.1	Protein Homology	CDS	28423	29514	.	+	0	ID=cds-WP_000505850.1;Parent=gene-C9F05_RS22880;Dbxref=GenBank:WP_000505850.1;Name=WP_000505850.1;Ontology_term=GO:0005524,GO:0005525,GO:0016887;gbkey=CDS;gene=ychF;go_function=ATP binding|0005524||IEA,GTP binding|0005525||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001538644.1;locus_tag=C9F05_RS22880;product=redox-regulated ATPase YchF;protein_id=WP_000505850.1;transl_table=11
##sequence-region NZ_PYKE01000269.1 1 4250
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000269.1	RefSeq	region	1	4250	.	+	.	ID=NZ_PYKE01000269.1:1..4250;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000269.1	RefSeq	gene	174	290	.	+	.	ID=gene-C9F05_RS17930;Name=C9F05_RS17930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17930;old_locus_tag=C9F05_18440
NZ_PYKE01000269.1	Protein Homology	CDS	174	290	.	+	0	ID=cds-WP_001617301.1;Parent=gene-C9F05_RS17930;Dbxref=GenBank:WP_001617301.1;Name=WP_001617301.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448342.1;locus_tag=C9F05_RS17930;product=hypothetical protein;protein_id=WP_001617301.1;transl_table=11
NZ_PYKE01000269.1	RefSeq	gene	287	715	.	+	.	ID=gene-C9F05_RS17935;Name=uspC;gbkey=Gene;gene=uspC;gene_biotype=protein_coding;locus_tag=C9F05_RS17935;old_locus_tag=C9F05_18445
NZ_PYKE01000269.1	Protein Homology	CDS	287	715	.	+	0	ID=cds-WP_000122606.1;Parent=gene-C9F05_RS17935;Dbxref=GenBank:WP_000122606.1;Name=WP_000122606.1;gbkey=CDS;gene=uspC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460884.1;locus_tag=C9F05_RS17935;product=universal stress protein UspC;protein_id=WP_000122606.1;transl_table=11
NZ_PYKE01000269.1	RefSeq	gene	733	2154	.	-	.	ID=gene-C9F05_RS17940;Name=otsA;gbkey=Gene;gene=otsA;gene_biotype=protein_coding;locus_tag=C9F05_RS17940;old_locus_tag=C9F05_18450
NZ_PYKE01000269.1	Protein Homology	CDS	733	2154	.	-	0	ID=cds-WP_000089042.1;Parent=gene-C9F05_RS17940;Dbxref=GenBank:WP_000089042.1;Name=WP_000089042.1;Ontology_term=GO:0005992,GO:0003825;gbkey=CDS;gene=otsA;go_function=alpha%2Calpha-trehalose-phosphate synthase (UDP-forming) activity|0003825||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460885.1;locus_tag=C9F05_RS17940;product=alpha%2Calpha-trehalose-phosphate synthase;protein_id=WP_000089042.1;transl_table=11
NZ_PYKE01000269.1	RefSeq	gene	2129	2932	.	-	.	ID=gene-C9F05_RS17945;Name=otsB;gbkey=Gene;gene=otsB;gene_biotype=protein_coding;locus_tag=C9F05_RS17945;old_locus_tag=C9F05_18455
NZ_PYKE01000269.1	Protein Homology	CDS	2129	2932	.	-	0	ID=cds-WP_000840114.1;Parent=gene-C9F05_RS17945;Dbxref=GenBank:WP_000840114.1;Name=WP_000840114.1;Ontology_term=GO:0005992,GO:0004805;gbkey=CDS;gene=otsB;go_function=trehalose-phosphatase activity|0004805||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460886.1;locus_tag=C9F05_RS17945;product=trehalose-phosphatase;protein_id=WP_000840114.1;transl_table=11
NZ_PYKE01000269.1	RefSeq	pseudogene	3155	3335	.	-	.	ID=gene-C9F05_RS17950;Name=araH;end_range=3335,.;gbkey=Gene;gene=araH;gene_biotype=pseudogene;locus_tag=C9F05_RS17950;old_locus_tag=C9F05_18460;partial=true;pseudo=true
NZ_PYKE01000269.1	Protein Homology	CDS	3155	3335	.	-	0	ID=cds-C9F05_RS17950;Parent=gene-C9F05_RS17950;Note=Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose%3B frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=3335,.;gbkey=CDS;gene=araH;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026162.2;locus_tag=C9F05_RS17950;partial=true;product=L-arabinose ABC transporter permease AraH;pseudo=true;transl_table=11
NZ_PYKE01000269.1	RefSeq	gene	3447	4004	.	-	.	ID=gene-C9F05_RS17955;Name=C9F05_RS17955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17955;old_locus_tag=C9F05_18465
NZ_PYKE01000269.1	Protein Homology	CDS	3447	4004	.	-	0	ID=cds-WP_000754798.1;Parent=gene-C9F05_RS17955;Dbxref=GenBank:WP_000754798.1;Name=WP_000754798.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460887.1;locus_tag=C9F05_RS17955;product=DJ-1/PfpI family protein;protein_id=WP_000754798.1;transl_table=11
##sequence-region NZ_PYKE01000237.1 1 4182
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000237.1	RefSeq	region	1	4182	.	+	.	ID=NZ_PYKE01000237.1:1..4182;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000237.1	RefSeq	gene	248	324	.	+	.	ID=gene-C9F05_RS15395;Name=C9F05_RS15395;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS15395;old_locus_tag=C9F05_15830
NZ_PYKE01000237.1	tRNAscan-SE	tRNA	248	324	.	+	.	ID=rna-C9F05_RS15395;Parent=gene-C9F05_RS15395;anticodon=(pos:282..284);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15395;product=tRNA-Arg
NZ_PYKE01000237.1	tRNAscan-SE	exon	248	324	.	+	.	ID=exon-C9F05_RS15395-1;Parent=rna-C9F05_RS15395;anticodon=(pos:282..284);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS15395;product=tRNA-Arg
NZ_PYKE01000237.1	RefSeq	gene	695	1261	.	+	.	ID=gene-C9F05_RS15400;Name=yqaB;gbkey=Gene;gene=yqaB;gene_biotype=protein_coding;locus_tag=C9F05_RS15400;old_locus_tag=C9F05_15835
NZ_PYKE01000237.1	Protein Homology	CDS	695	1261	.	+	0	ID=cds-WP_000271296.1;Parent=gene-C9F05_RS15400;Dbxref=GenBank:WP_000271296.1;Name=WP_000271296.1;gbkey=CDS;gene=yqaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461746.1;locus_tag=C9F05_RS15400;product=fructose-1-phosphate/6-phosphogluconate phosphatase;protein_id=WP_000271296.1;transl_table=11
NZ_PYKE01000237.1	RefSeq	gene	1258	1683	.	+	.	ID=gene-C9F05_RS15405;Name=C9F05_RS15405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15405;old_locus_tag=C9F05_15840
NZ_PYKE01000237.1	Protein Homology	CDS	1258	1683	.	+	0	ID=cds-WP_001279499.1;Parent=gene-C9F05_RS15405;Dbxref=GenBank:WP_001279499.1;Name=WP_001279499.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461745.1;locus_tag=C9F05_RS15405;product=YqaA family protein;protein_id=WP_001279499.1;transl_table=11
NZ_PYKE01000237.1	RefSeq	gene	1760	3316	.	+	.	ID=gene-C9F05_RS15410;Name=gshA;gbkey=Gene;gene=gshA;gene_biotype=protein_coding;locus_tag=C9F05_RS15410;old_locus_tag=C9F05_15845
NZ_PYKE01000237.1	Protein Homology	CDS	1760	3316	.	+	0	ID=cds-WP_000611821.1;Parent=gene-C9F05_RS15410;Dbxref=GenBank:WP_000611821.1;Name=WP_000611821.1;Ontology_term=GO:0006750,GO:0004357;gbkey=CDS;gene=gshA;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461744.1;locus_tag=C9F05_RS15410;product=glutamate--cysteine ligase;protein_id=WP_000611821.1;transl_table=11
NZ_PYKE01000237.1	RefSeq	gene	3466	3981	.	+	.	ID=gene-C9F05_RS15415;Name=luxS;gbkey=Gene;gene=luxS;gene_biotype=protein_coding;locus_tag=C9F05_RS15415;old_locus_tag=C9F05_15850
NZ_PYKE01000237.1	Protein Homology	CDS	3466	3981	.	+	0	ID=cds-WP_135370437.1;Parent=gene-C9F05_RS15415;Dbxref=GenBank:WP_135370437.1;Name=WP_135370437.1;gbkey=CDS;gene=luxS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008458247.1;locus_tag=C9F05_RS15415;product=S-ribosylhomocysteine lyase;protein_id=WP_135370437.1;transl_table=11
##sequence-region NZ_PYKE01000187.1 1 4155
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000187.1	RefSeq	region	1	4155	.	+	.	ID=NZ_PYKE01000187.1:1..4155;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000187.1	RefSeq	gene	155	502	.	+	.	ID=gene-C9F05_RS12380;Name=C9F05_RS12380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12380;old_locus_tag=C9F05_12730
NZ_PYKE01000187.1	Protein Homology	CDS	155	502	.	+	0	ID=cds-WP_000615248.1;Parent=gene-C9F05_RS12380;Dbxref=GenBank:WP_000615248.1;Name=WP_000615248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000615246.1;locus_tag=C9F05_RS12380;product=Mor transcription activator family protein;protein_id=WP_000615248.1;transl_table=11
NZ_PYKE01000187.1	RefSeq	gene	633	1982	.	-	.	ID=gene-C9F05_RS12385;Name=lysC;gbkey=Gene;gene=lysC;gene_biotype=protein_coding;locus_tag=C9F05_RS12385;old_locus_tag=C9F05_12735
NZ_PYKE01000187.1	Protein Homology	CDS	633	1982	.	-	0	ID=cds-WP_000136400.1;Parent=gene-C9F05_RS12385;Dbxref=GenBank:WP_000136400.1;Name=WP_000136400.1;Ontology_term=GO:0009089,GO:0004072;gbkey=CDS;gene=lysC;go_function=aspartate kinase activity|0004072||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463085.1;locus_tag=C9F05_RS12385;product=lysine-sensitive aspartokinase 3;protein_id=WP_000136400.1;transl_table=11
NZ_PYKE01000187.1	RefSeq	gene	2327	3976	.	+	.	ID=gene-C9F05_RS12390;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=C9F05_RS12390;old_locus_tag=C9F05_12740
NZ_PYKE01000187.1	Protein Homology	CDS	2327	3976	.	+	0	ID=cds-WP_000790024.1;Parent=gene-C9F05_RS12390;Dbxref=GenBank:WP_000790024.1;Name=WP_000790024.1;Ontology_term=GO:0006094,GO:0006096,GO:0004347;gbkey=CDS;gene=pgi;go_function=glucose-6-phosphate isomerase activity|0004347||IEA;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463086.1;locus_tag=C9F05_RS12390;product=glucose-6-phosphate isomerase;protein_id=WP_000790024.1;transl_table=11
##sequence-region NZ_PYKE01000266.1 1 30243
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000266.1	RefSeq	region	1	30243	.	+	.	ID=NZ_PYKE01000266.1:1..30243;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000266.1	RefSeq	gene	366	1490	.	-	.	ID=gene-C9F05_RS17705;Name=sopF;gbkey=Gene;gene=sopF;gene_biotype=protein_coding;locus_tag=C9F05_RS17705;old_locus_tag=C9F05_18215
NZ_PYKE01000266.1	Protein Homology	CDS	366	1490	.	-	0	ID=cds-WP_135370509.1;Parent=gene-C9F05_RS17705;Dbxref=GenBank:WP_135370509.1;Name=WP_135370509.1;gbkey=CDS;gene=sopF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460209.1;locus_tag=C9F05_RS17705;product=type III secretion system effector SopF;protein_id=WP_135370509.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	1935	3185	.	-	.	ID=gene-C9F05_RS17710;Name=icd;gbkey=Gene;gene=icd;gene_biotype=protein_coding;locus_tag=C9F05_RS17710;old_locus_tag=C9F05_18220
NZ_PYKE01000266.1	Protein Homology	CDS	1935	3185	.	-	0	ID=cds-WP_000444508.1;Parent=gene-C9F05_RS17710;Dbxref=GenBank:WP_000444508.1;Name=WP_000444508.1;Ontology_term=GO:0006099,GO:0000287,GO:0004450,GO:0051287;gbkey=CDS;gene=icd;go_function=magnesium ion binding|0000287||IEA,isocitrate dehydrogenase (NADP+) activity|0004450||IEA,NAD binding|0051287||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000444467.1;locus_tag=C9F05_RS17710;product=NADP-dependent isocitrate dehydrogenase;protein_id=WP_000444508.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	3357	4022	.	+	.	ID=gene-C9F05_RS17715;Name=rluE;gbkey=Gene;gene=rluE;gene_biotype=protein_coding;locus_tag=C9F05_RS17715;old_locus_tag=C9F05_18225
NZ_PYKE01000266.1	Protein Homology	CDS	3357	4022	.	+	0	ID=cds-WP_001249412.1;Parent=gene-C9F05_RS17715;Dbxref=GenBank:WP_001249412.1;Name=WP_001249412.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;gene=rluE;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460207.1;locus_tag=C9F05_RS17715;product=23S rRNA pseudouridine(2457) synthase RluE;protein_id=WP_001249412.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	4019	4348	.	+	.	ID=gene-C9F05_RS17720;Name=C9F05_RS17720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17720;old_locus_tag=C9F05_18230
NZ_PYKE01000266.1	Protein Homology	CDS	4019	4348	.	+	0	ID=cds-WP_000825956.1;Parent=gene-C9F05_RS17720;Dbxref=GenBank:WP_000825956.1;Name=WP_000825956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460206.1;locus_tag=C9F05_RS17720;product=lysozyme inhibitor LprI family protein;protein_id=WP_000825956.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	4360	4821	.	+	.	ID=gene-C9F05_RS17725;Name=C9F05_RS17725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17725;old_locus_tag=C9F05_18235
NZ_PYKE01000266.1	Protein Homology	CDS	4360	4821	.	+	0	ID=cds-WP_000476069.1;Parent=gene-C9F05_RS17725;Dbxref=GenBank:WP_000476069.1;Name=WP_000476069.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460205.1;locus_tag=C9F05_RS17725;product=NUDIX hydrolase;protein_id=WP_000476069.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	4875	5981	.	+	.	ID=gene-C9F05_RS17730;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;gene_synonym=trmU;locus_tag=C9F05_RS17730;old_locus_tag=C9F05_18240
NZ_PYKE01000266.1	Protein Homology	CDS	4875	5981	.	+	0	ID=cds-WP_135370510.1;Parent=gene-C9F05_RS17730;Dbxref=GenBank:WP_135370510.1;Name=WP_135370510.1;Ontology_term=GO:0002143,GO:0006396,GO:0004808,GO:0016783,GO:0005737;gbkey=CDS;gene=mnmA;go_component=cytoplasm|0005737||IEA;go_function=tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity|0004808||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA wobble position uridine thiolation|0002143||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309632.2;locus_tag=C9F05_RS17730;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_135370510.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	6068	6709	.	+	.	ID=gene-C9F05_RS17735;Name=hflD;gbkey=Gene;gene=hflD;gene_biotype=protein_coding;locus_tag=C9F05_RS17735;old_locus_tag=C9F05_18245
NZ_PYKE01000266.1	Protein Homology	CDS	6068	6709	.	+	0	ID=cds-WP_001519653.1;Parent=gene-C9F05_RS17735;Dbxref=GenBank:WP_001519653.1;Name=WP_001519653.1;gbkey=CDS;gene=hflD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415650.1;locus_tag=C9F05_RS17735;product=high frequency lysogenization protein HflD;protein_id=WP_001519653.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	6713	8083	.	+	.	ID=gene-C9F05_RS17740;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=C9F05_RS17740;old_locus_tag=C9F05_18250
NZ_PYKE01000266.1	Protein Homology	CDS	6713	8083	.	+	0	ID=cds-WP_000423763.1;Parent=gene-C9F05_RS17740;Dbxref=GenBank:WP_000423763.1;Name=WP_000423763.1;Ontology_term=GO:0006188,GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=IMP biosynthetic process|0006188||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002950897.1;locus_tag=C9F05_RS17740;product=adenylosuccinate lyase;protein_id=WP_000423763.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	8210	8881	.	+	.	ID=gene-C9F05_RS17745;Name=phoP;gbkey=Gene;gene=phoP;gene_biotype=protein_coding;locus_tag=C9F05_RS17745;old_locus_tag=C9F05_18255
NZ_PYKE01000266.1	Protein Homology	CDS	8210	8881	.	+	0	ID=cds-WP_001537766.1;Parent=gene-C9F05_RS17745;Dbxref=GenBank:WP_001537766.1;Name=WP_001537766.1;gbkey=CDS;gene=phoP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707059.1;locus_tag=C9F05_RS17745;product=two-component system response regulator PhoP;protein_id=WP_001537766.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	8881	10344	.	+	.	ID=gene-C9F05_RS17750;Name=phoQ;gbkey=Gene;gene=phoQ;gene_biotype=protein_coding;locus_tag=C9F05_RS17750;old_locus_tag=C9F05_18260
NZ_PYKE01000266.1	Protein Homology	CDS	8881	10344	.	+	0	ID=cds-WP_001031687.1;Parent=gene-C9F05_RS17750;Dbxref=GenBank:WP_001031687.1;Name=WP_001031687.1;gbkey=CDS;gene=phoQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460200.1;locus_tag=C9F05_RS17750;product=two-component system sensor histidine kinase PhoQ;protein_id=WP_001031687.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	10425	11546	.	+	.	ID=gene-C9F05_RS17755;Name=roxA;gbkey=Gene;gene=roxA;gene_biotype=protein_coding;gene_synonym=ycfD;locus_tag=C9F05_RS17755;old_locus_tag=C9F05_18265
NZ_PYKE01000266.1	Protein Homology	CDS	10425	11546	.	+	0	ID=cds-WP_079928059.1;Parent=gene-C9F05_RS17755;Dbxref=GenBank:WP_079928059.1;Name=WP_079928059.1;gbkey=CDS;gene=roxA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460199.1;locus_tag=C9F05_RS17755;product=[50S ribosomal protein L16]-arginine 3-hydroxylase;protein_id=WP_079928059.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	11586	12920	.	-	.	ID=gene-C9F05_RS17760;Name=C9F05_RS17760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17760;old_locus_tag=C9F05_18270
NZ_PYKE01000266.1	Protein Homology	CDS	11586	12920	.	-	0	ID=cds-WP_135370511.1;Parent=gene-C9F05_RS17760;Dbxref=GenBank:WP_135370511.1;Name=WP_135370511.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460198.1;locus_tag=C9F05_RS17760;product=hypothetical protein;protein_id=WP_135370511.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	12924	14153	.	-	.	ID=gene-C9F05_RS17765;Name=pepT;gbkey=Gene;gene=pepT;gene_biotype=protein_coding;locus_tag=C9F05_RS17765;old_locus_tag=C9F05_18275
NZ_PYKE01000266.1	Protein Homology	CDS	12924	14153	.	-	0	ID=cds-WP_000359410.1;Parent=gene-C9F05_RS17765;Dbxref=GenBank:WP_000359410.1;Name=WP_000359410.1;Ontology_term=GO:0006508,GO:0008270,GO:0045148;gbkey=CDS;gene=pepT;go_function=zinc ion binding|0008270||IEA,tripeptide aminopeptidase activity|0045148||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460197.1;locus_tag=C9F05_RS17765;product=peptidase T;protein_id=WP_000359410.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	14404	15540	.	+	.	ID=gene-C9F05_RS17770;Name=potA;gbkey=Gene;gene=potA;gene_biotype=protein_coding;locus_tag=C9F05_RS17770;old_locus_tag=C9F05_18280
NZ_PYKE01000266.1	Protein Homology	CDS	14404	15540	.	+	0	ID=cds-WP_000531607.1;Parent=gene-C9F05_RS17770;Dbxref=GenBank:WP_000531607.1;Name=WP_000531607.1;Ontology_term=GO:0015846,GO:0005524,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=potA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460196.1;locus_tag=C9F05_RS17770;product=spermidine/putrescine ABC transporter ATP-binding protein PotA;protein_id=WP_000531607.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	15524	16387	.	+	.	ID=gene-C9F05_RS17775;Name=potB;gbkey=Gene;gene=potB;gene_biotype=protein_coding;locus_tag=C9F05_RS17775;old_locus_tag=C9F05_18285
NZ_PYKE01000266.1	Protein Homology	CDS	15524	16387	.	+	0	ID=cds-WP_000799391.1;Parent=gene-C9F05_RS17775;Dbxref=GenBank:WP_000799391.1;Name=WP_000799391.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=potB;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460195.1;locus_tag=C9F05_RS17775;product=spermidine/putrescine ABC transporter permease PotB;protein_id=WP_000799391.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	16716	17726	.	+	.	ID=gene-C9F05_RS17780;Name=sifA;gbkey=Gene;gene=sifA;gene_biotype=protein_coding;locus_tag=C9F05_RS17780;old_locus_tag=C9F05_18290
NZ_PYKE01000266.1	Protein Homology	CDS	16716	17726	.	+	0	ID=cds-WP_080222968.1;Parent=gene-C9F05_RS17780;Dbxref=GenBank:WP_080222968.1;Name=WP_080222968.1;gbkey=CDS;gene=sifA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460194.1;locus_tag=C9F05_RS17780;product=SPI-2 type III secretion system effector SifA;protein_id=WP_080222968.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	18042	18821	.	+	.	ID=gene-C9F05_RS17785;Name=potC;gbkey=Gene;gene=potC;gene_biotype=protein_coding;locus_tag=C9F05_RS17785;old_locus_tag=C9F05_18295
NZ_PYKE01000266.1	Protein Homology	CDS	18042	18821	.	+	0	ID=cds-WP_000580299.1;Parent=gene-C9F05_RS17785;Dbxref=GenBank:WP_000580299.1;Name=WP_000580299.1;Ontology_term=GO:0055085;gbkey=CDS;gene=potC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460193.1;locus_tag=C9F05_RS17785;product=spermidine/putrescine ABC transporter permease PotC;protein_id=WP_000580299.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	18846	19892	.	+	.	ID=gene-C9F05_RS17790;Name=potD;gbkey=Gene;gene=potD;gene_biotype=protein_coding;locus_tag=C9F05_RS17790;old_locus_tag=C9F05_18300
NZ_PYKE01000266.1	Protein Homology	CDS	18846	19892	.	+	0	ID=cds-WP_000759329.1;Parent=gene-C9F05_RS17790;Dbxref=GenBank:WP_000759329.1;Name=WP_000759329.1;Ontology_term=GO:0015846,GO:0019808,GO:0042597;gbkey=CDS;gene=potD;go_component=periplasmic space|0042597||IEA;go_function=polyamine binding|0019808||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121082.1;locus_tag=C9F05_RS17790;product=spermidine/putrescine ABC transporter substrate-binding protein PotD;protein_id=WP_000759329.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	19974	20795	.	-	.	ID=gene-C9F05_RS17795;Name=cobB;gbkey=Gene;gene=cobB;gene_biotype=protein_coding;locus_tag=C9F05_RS17795;old_locus_tag=C9F05_18305
NZ_PYKE01000266.1	Protein Homology	CDS	19974	20795	.	-	0	ID=cds-WP_001191856.1;Parent=gene-C9F05_RS17795;Dbxref=GenBank:WP_001191856.1;Name=WP_001191856.1;Ontology_term=GO:0070403;gbkey=CDS;gene=cobB;go_function=NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460191.1;locus_tag=C9F05_RS17795;product=Sir2 family NAD+-dependent deacetylase;protein_id=WP_001191856.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	20814	21725	.	-	.	ID=gene-C9F05_RS17800;Name=nagK;gbkey=Gene;gene=nagK;gene_biotype=protein_coding;locus_tag=C9F05_RS17800;old_locus_tag=C9F05_18310
NZ_PYKE01000266.1	Protein Homology	CDS	20814	21725	.	-	0	ID=cds-WP_000291331.1;Parent=gene-C9F05_RS17800;Dbxref=GenBank:WP_000291331.1;Name=WP_000291331.1;Ontology_term=GO:0045127;gbkey=CDS;gene=nagK;go_function=N-acetylglucosamine kinase activity|0045127||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460190.1;locus_tag=C9F05_RS17800;product=N-acetylglucosamine kinase;protein_id=WP_000291331.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	21754	22998	.	-	.	ID=gene-C9F05_RS17805;Name=lolE;gbkey=Gene;gene=lolE;gene_biotype=protein_coding;locus_tag=C9F05_RS17805;old_locus_tag=C9F05_18315
NZ_PYKE01000266.1	Protein Homology	CDS	21754	22998	.	-	0	ID=cds-WP_000168091.1;Parent=gene-C9F05_RS17805;Dbxref=GenBank:WP_000168091.1;Name=WP_000168091.1;Ontology_term=GO:0042953;gbkey=CDS;gene=lolE;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460189.1;locus_tag=C9F05_RS17805;product=lipoprotein-releasing ABC transporter permease subunit LolE;protein_id=WP_000168091.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	22998	23699	.	-	.	ID=gene-C9F05_RS17810;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=C9F05_RS17810;old_locus_tag=C9F05_18320
NZ_PYKE01000266.1	Protein Homology	CDS	22998	23699	.	-	0	ID=cds-WP_001033714.1;Parent=gene-C9F05_RS17810;Dbxref=GenBank:WP_001033714.1;Name=WP_001033714.1;Ontology_term=GO:0042953,GO:0005524,GO:0016020;gbkey=CDS;gene=lolD;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460188.1;locus_tag=C9F05_RS17810;product=lipoprotein-releasing ABC transporter ATP-binding protein LolD;protein_id=WP_001033714.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	23692	24891	.	-	.	ID=gene-C9F05_RS17815;Name=lolC;gbkey=Gene;gene=lolC;gene_biotype=protein_coding;locus_tag=C9F05_RS17815;old_locus_tag=C9F05_18325
NZ_PYKE01000266.1	Protein Homology	CDS	23692	24891	.	-	0	ID=cds-WP_001518787.1;Parent=gene-C9F05_RS17815;Dbxref=GenBank:WP_001518787.1;Name=WP_001518787.1;Ontology_term=GO:0042953,GO:0016020;gbkey=CDS;gene=lolC;go_component=membrane|0016020||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004976588.1;locus_tag=C9F05_RS17815;product=lipoprotein-releasing ABC transporter permease subunit LolC;protein_id=WP_001518787.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	25229	28675	.	+	.	ID=gene-C9F05_RS17820;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=C9F05_RS17820;old_locus_tag=C9F05_18330
NZ_PYKE01000266.1	Protein Homology	CDS	25229	28675	.	+	0	ID=cds-WP_001114323.1;Parent=gene-C9F05_RS17820;Dbxref=GenBank:WP_001114323.1;Name=WP_001114323.1;Ontology_term=GO:0006281,GO:0003676,GO:0003684,GO:0005524;gbkey=CDS;gene=mfd;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460186.1;locus_tag=C9F05_RS17820;product=transcription-repair coupling factor;protein_id=WP_001114323.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	28823	29788	.	+	.	ID=gene-C9F05_RS17825;Name=ldtC;gbkey=Gene;gene=ldtC;gene_biotype=protein_coding;locus_tag=C9F05_RS17825;old_locus_tag=C9F05_18335
NZ_PYKE01000266.1	Protein Homology	CDS	28823	29788	.	+	0	ID=cds-WP_000482961.1;Parent=gene-C9F05_RS17825;Dbxref=GenBank:WP_000482961.1;Name=WP_000482961.1;gbkey=CDS;gene=ldtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460185.1;locus_tag=C9F05_RS17825;product=L%2CD-transpeptidase LdtC;protein_id=WP_000482961.1;transl_table=11
NZ_PYKE01000266.1	RefSeq	gene	29885	30142	.	-	.	ID=gene-C9F05_RS17830;Name=bhsA;gbkey=Gene;gene=bhsA;gene_biotype=protein_coding;locus_tag=C9F05_RS17830;old_locus_tag=C9F05_18340
NZ_PYKE01000266.1	Protein Homology	CDS	29885	30142	.	-	0	ID=cds-WP_000800134.1;Parent=gene-C9F05_RS17830;Dbxref=GenBank:WP_000800134.1;Name=WP_000800134.1;Ontology_term=GO:0006950,GO:0046688;gbkey=CDS;gene=bhsA;go_process=response to stress|0006950||IEA,response to copper ion|0046688||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460184.1;locus_tag=C9F05_RS17830;product=multiple stress resistance protein BhsA;protein_id=WP_000800134.1;transl_table=11
##sequence-region NZ_PYKE01000136.1 1 4154
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000136.1	RefSeq	region	1	4154	.	+	.	ID=NZ_PYKE01000136.1:1..4154;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000136.1	RefSeq	gene	185	376	.	+	.	ID=gene-C9F05_RS10070;Name=C9F05_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10070;old_locus_tag=C9F05_10325
NZ_PYKE01000136.1	Protein Homology	CDS	185	376	.	+	0	ID=cds-WP_000075924.1;Parent=gene-C9F05_RS10070;Dbxref=GenBank:WP_000075924.1;Name=WP_000075924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461441.1;locus_tag=C9F05_RS10070;product=YfgG family protein;protein_id=WP_000075924.1;transl_table=11
NZ_PYKE01000136.1	RefSeq	pseudogene	454	573	.	-	.	ID=gene-C9F05_RS23795;Name=C9F05_RS23795;end_range=573,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23795;partial=true;pseudo=true
NZ_PYKE01000136.1	Protein Homology	CDS	454	573	.	-	0	ID=cds-C9F05_RS23795;Parent=gene-C9F05_RS23795;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=573,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448901.1;locus_tag=C9F05_RS23795;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000136.1	RefSeq	gene	713	1174	.	+	.	ID=gene-C9F05_RS24025;Name=C9F05_RS24025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24025
NZ_PYKE01000136.1	Protein Homology	CDS	713	1174	.	+	0	ID=cds-WP_369597813.1;Parent=gene-C9F05_RS24025;Dbxref=GenBank:WP_369597813.1;Name=WP_369597813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_154057295.1;locus_tag=C9F05_RS24025;product=STM2901 family protein;protein_id=WP_369597813.1;transl_table=11
NZ_PYKE01000136.1	RefSeq	gene	1159	1488	.	+	.	ID=gene-C9F05_RS10080;Name=C9F05_RS10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10080;old_locus_tag=C9F05_10335
NZ_PYKE01000136.1	Protein Homology	CDS	1159	1488	.	+	0	ID=cds-WP_001619362.1;Parent=gene-C9F05_RS10080;Dbxref=GenBank:WP_001619362.1;Name=WP_001619362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461443.1;locus_tag=C9F05_RS10080;product=DUF1493 family protein;protein_id=WP_001619362.1;transl_table=11
NZ_PYKE01000136.1	RefSeq	pseudogene	1568	1884	.	-	.	ID=gene-C9F05_RS10085;Name=C9F05_RS10085;end_range=1884,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS10085;old_locus_tag=C9F05_10340;partial=true;pseudo=true;start_range=.,1568
NZ_PYKE01000136.1	Protein Homology	CDS	1568	1884	.	-	0	ID=cds-C9F05_RS10085;Parent=gene-C9F05_RS10085;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0015074;end_range=1884,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612015.1;locus_tag=C9F05_RS10085;partial=true;product=DDE-type integrase/transposase/recombinase;pseudo=true;start_range=.,1568;transl_table=11
NZ_PYKE01000136.1	RefSeq	gene	2146	2628	.	-	.	ID=gene-C9F05_RS10090;Name=C9F05_RS10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10090;old_locus_tag=C9F05_10345
NZ_PYKE01000136.1	Protein Homology	CDS	2146	2628	.	-	0	ID=cds-WP_057935467.1;Parent=gene-C9F05_RS10090;Dbxref=GenBank:WP_057935467.1;Name=WP_057935467.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004152707.1;locus_tag=C9F05_RS10090;product=DUF2514 domain-containing protein;protein_id=WP_057935467.1;transl_table=11
NZ_PYKE01000136.1	RefSeq	gene	2625	3206	.	-	.	ID=gene-C9F05_RS10095;Name=C9F05_RS10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10095;old_locus_tag=C9F05_10350
NZ_PYKE01000136.1	Protein Homology	CDS	2625	3206	.	-	0	ID=cds-WP_232472666.1;Parent=gene-C9F05_RS10095;Dbxref=GenBank:WP_232472666.1;Name=WP_232472666.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003847201.1;locus_tag=C9F05_RS10095;product=glycoside hydrolase family 19 protein;protein_id=WP_232472666.1;transl_table=11
NZ_PYKE01000136.1	RefSeq	gene	3241	3549	.	-	.	ID=gene-C9F05_RS10100;Name=C9F05_RS10100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10100;old_locus_tag=C9F05_10355
NZ_PYKE01000136.1	Protein Homology	CDS	3241	3549	.	-	0	ID=cds-WP_057935468.1;Parent=gene-C9F05_RS10100;Dbxref=GenBank:WP_057935468.1;Name=WP_057935468.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004146393.1;locus_tag=C9F05_RS10100;product=phage holin family protein;protein_id=WP_057935468.1;transl_table=11
NZ_PYKE01000136.1	RefSeq	gene	3536	3895	.	-	.	ID=gene-C9F05_RS10105;Name=C9F05_RS10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10105;old_locus_tag=C9F05_10360
NZ_PYKE01000136.1	Protein Homology	CDS	3536	3895	.	-	0	ID=cds-WP_232472639.1;Parent=gene-C9F05_RS10105;Dbxref=GenBank:WP_232472639.1;Name=WP_232472639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001275998.1;locus_tag=C9F05_RS10105;product=putative holin;protein_id=WP_232472639.1;transl_table=11
##sequence-region NZ_PYKE01000275.1 1 29980
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000275.1	RefSeq	region	1	29980	.	+	.	ID=NZ_PYKE01000275.1:1..29980;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000275.1	RefSeq	gene	1	1124	.	+	.	ID=gene-C9F05_RS18215;Name=C9F05_RS18215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18215;old_locus_tag=C9F05_18740;partial=true;start_range=.,1
NZ_PYKE01000275.1	Protein Homology	CDS	1	1124	.	+	2	ID=cds-WP_135370520.1;Parent=gene-C9F05_RS18215;Dbxref=GenBank:WP_135370520.1;Name=WP_135370520.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462614.1;locus_tag=C9F05_RS18215;partial=true;product=lipopolysaccharide N-acetylglucosaminyltransferase;protein_id=WP_135370520.1;start_range=.,1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	1180	2394	.	-	.	ID=gene-C9F05_RS18220;Name=rfaL;gbkey=Gene;gene=rfaL;gene_biotype=protein_coding;locus_tag=C9F05_RS18220;old_locus_tag=C9F05_18745
NZ_PYKE01000275.1	Protein Homology	CDS	1180	2394	.	-	0	ID=cds-WP_001728215.1;Parent=gene-C9F05_RS18220;Dbxref=GenBank:WP_001728215.1;Name=WP_001728215.1;gbkey=CDS;gene=rfaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462613.1;locus_tag=C9F05_RS18220;product=O-antigen ligase RfaL;protein_id=WP_001728215.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	2434	3387	.	-	.	ID=gene-C9F05_RS18225;Name=rfaC;gbkey=Gene;gene=rfaC;gene_biotype=protein_coding;locus_tag=C9F05_RS18225;old_locus_tag=C9F05_18750
NZ_PYKE01000275.1	Protein Homology	CDS	2434	3387	.	-	0	ID=cds-WP_001264616.1;Parent=gene-C9F05_RS18225;Dbxref=GenBank:WP_001264616.1;Name=WP_001264616.1;Ontology_term=GO:0009244,GO:0008920;gbkey=CDS;gene=rfaC;go_function=lipopolysaccharide heptosyltransferase activity|0008920||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462612.1;locus_tag=C9F05_RS18225;product=lipopolysaccharide heptosyltransferase RfaC;protein_id=WP_001264616.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	3387	4433	.	-	.	ID=gene-C9F05_RS18230;Name=rfaF;gbkey=Gene;gene=rfaF;gene_biotype=protein_coding;locus_tag=C9F05_RS18230;old_locus_tag=C9F05_18755
NZ_PYKE01000275.1	Protein Homology	CDS	3387	4433	.	-	0	ID=cds-WP_000699196.1;Parent=gene-C9F05_RS18230;Dbxref=GenBank:WP_000699196.1;Name=WP_000699196.1;Ontology_term=GO:0009103,GO:0016757;gbkey=CDS;gene=rfaF;go_function=glycosyltransferase activity|0016757||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462611.1;locus_tag=C9F05_RS18230;product=ADP-heptose--LPS heptosyltransferase RfaF;protein_id=WP_000699196.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	4436	5368	.	-	.	ID=gene-C9F05_RS18235;Name=rfaD;gbkey=Gene;gene=rfaD;gene_biotype=protein_coding;locus_tag=C9F05_RS18235;old_locus_tag=C9F05_18760
NZ_PYKE01000275.1	Protein Homology	CDS	4436	5368	.	-	0	ID=cds-WP_000587771.1;Parent=gene-C9F05_RS18235;Dbxref=GenBank:WP_000587771.1;Name=WP_000587771.1;Ontology_term=GO:0005975,GO:0008712;gbkey=CDS;gene=rfaD;go_function=ADP-glyceromanno-heptose 6-epimerase activity|0008712||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233050.1;locus_tag=C9F05_RS18235;product=ADP-glyceromanno-heptose 6-epimerase;protein_id=WP_000587771.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	5571	6767	.	+	.	ID=gene-C9F05_RS18240;Name=kbl;gbkey=Gene;gene=kbl;gene_biotype=protein_coding;locus_tag=C9F05_RS18240;old_locus_tag=C9F05_18765
NZ_PYKE01000275.1	Protein Homology	CDS	5571	6767	.	+	0	ID=cds-WP_001213790.1;Parent=gene-C9F05_RS18240;Dbxref=GenBank:WP_001213790.1;Name=WP_001213790.1;Ontology_term=GO:0006567,GO:0008890;gbkey=CDS;gene=kbl;go_function=glycine C-acetyltransferase activity|0008890||IEA;go_process=L-threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239151.1;locus_tag=C9F05_RS18240;product=glycine C-acetyltransferase;protein_id=WP_001213790.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	6777	7802	.	+	.	ID=gene-C9F05_RS18245;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=C9F05_RS18245;old_locus_tag=C9F05_18770
NZ_PYKE01000275.1	Protein Homology	CDS	6777	7802	.	+	0	ID=cds-WP_000645990.1;Parent=gene-C9F05_RS18245;Dbxref=GenBank:WP_000645990.1;Name=WP_000645990.1;Ontology_term=GO:0006567,GO:0008743;gbkey=CDS;gene=tdh;go_function=L-threonine 3-dehydrogenase activity|0008743||IEA;go_process=L-threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120462.1;locus_tag=C9F05_RS18245;product=L-threonine 3-dehydrogenase;protein_id=WP_000645990.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	8095	9129	.	+	.	ID=gene-C9F05_RS18250;Name=C9F05_RS18250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18250;old_locus_tag=C9F05_18775
NZ_PYKE01000275.1	Protein Homology	CDS	8095	9129	.	+	0	ID=cds-WP_135370521.1;Parent=gene-C9F05_RS18250;Dbxref=GenBank:WP_135370521.1;Name=WP_135370521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462607.1;locus_tag=C9F05_RS18250;product=glycosyltransferase;protein_id=WP_135370521.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	9116	10078	.	-	.	ID=gene-C9F05_RS18255;Name=C9F05_RS18255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18255;old_locus_tag=C9F05_18780
NZ_PYKE01000275.1	Protein Homology	CDS	9116	10078	.	-	0	ID=cds-WP_001135519.1;Parent=gene-C9F05_RS18255;Dbxref=GenBank:WP_001135519.1;Name=WP_001135519.1;Ontology_term=GO:0005975,GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462606.1;locus_tag=C9F05_RS18255;product=divergent polysaccharide deacetylase family protein;protein_id=WP_001135519.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	10082	11341	.	-	.	ID=gene-C9F05_RS18260;Name=envC;gbkey=Gene;gene=envC;gene_biotype=protein_coding;locus_tag=C9F05_RS18260;old_locus_tag=C9F05_18785
NZ_PYKE01000275.1	Protein Homology	CDS	10082	11341	.	-	0	ID=cds-WP_058814511.1;Parent=gene-C9F05_RS18260;Dbxref=GenBank:WP_058814511.1;Name=WP_058814511.1;gbkey=CDS;gene=envC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418070.6;locus_tag=C9F05_RS18260;product=murein hydrolase activator EnvC;protein_id=WP_058814511.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	11375	12919	.	-	.	ID=gene-C9F05_RS18265;Name=gpmM;gbkey=Gene;gene=gpmM;gene_biotype=protein_coding;gene_synonym=pgmI;locus_tag=C9F05_RS18265;old_locus_tag=C9F05_18790
NZ_PYKE01000275.1	Protein Homology	CDS	11375	12919	.	-	0	ID=cds-WP_000116588.1;Parent=gene-C9F05_RS18265;Dbxref=GenBank:WP_000116588.1;Name=WP_000116588.1;Ontology_term=GO:0006007,GO:0004619;gbkey=CDS;gene=gpmM;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glucose catabolic process|0006007||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462604.1;locus_tag=C9F05_RS18265;product=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase;protein_id=WP_000116588.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	13167	13598	.	+	.	ID=gene-C9F05_RS18270;Name=C9F05_RS18270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18270;old_locus_tag=C9F05_18795
NZ_PYKE01000275.1	Protein Homology	CDS	13167	13598	.	+	0	ID=cds-WP_001156179.1;Parent=gene-C9F05_RS18270;Dbxref=GenBank:WP_001156179.1;Name=WP_001156179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462603.1;locus_tag=C9F05_RS18270;product=rhodanese-like domain-containing protein;protein_id=WP_001156179.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	13684	13935	.	+	.	ID=gene-C9F05_RS18275;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=C9F05_RS18275;old_locus_tag=C9F05_18800
NZ_PYKE01000275.1	Protein Homology	CDS	13684	13935	.	+	0	ID=cds-WP_001273795.1;Parent=gene-C9F05_RS18275;Dbxref=GenBank:WP_001273795.1;Name=WP_001273795.1;gbkey=CDS;gene=grxC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462602.1;locus_tag=C9F05_RS18275;product=glutaredoxin 3;protein_id=WP_001273795.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	13979	14446	.	+	.	ID=gene-C9F05_RS18280;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=C9F05_RS18280;old_locus_tag=C9F05_18805
NZ_PYKE01000275.1	Protein Homology	CDS	13979	14446	.	+	0	ID=cds-WP_000003370.1;Parent=gene-C9F05_RS18280;Dbxref=GenBank:WP_000003370.1;Name=WP_000003370.1;gbkey=CDS;gene=secB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015369180.1;locus_tag=C9F05_RS18280;product=protein-export chaperone SecB;protein_id=WP_000003370.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	14446	15465	.	+	.	ID=gene-C9F05_RS18285;Name=gpsA;gbkey=Gene;gene=gpsA;gene_biotype=protein_coding;locus_tag=C9F05_RS18285;old_locus_tag=C9F05_18810
NZ_PYKE01000275.1	Protein Homology	CDS	14446	15465	.	+	0	ID=cds-WP_001076596.1;Parent=gene-C9F05_RS18285;Dbxref=GenBank:WP_001076596.1;Name=WP_001076596.1;Ontology_term=GO:0006072,GO:0047952;gbkey=CDS;gene=gpsA;go_function=glycerol-3-phosphate dehydrogenase [NAD(P)+] activity|0047952||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462600.1;locus_tag=C9F05_RS18285;product=NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;protein_id=WP_001076596.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	15543	16364	.	+	.	ID=gene-C9F05_RS18290;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=C9F05_RS18290;old_locus_tag=C9F05_18815
NZ_PYKE01000275.1	Protein Homology	CDS	15543	16364	.	+	0	ID=cds-WP_001112113.1;Parent=gene-C9F05_RS18290;Dbxref=GenBank:WP_001112113.1;Name=WP_001112113.1;Ontology_term=GO:0006535,GO:0009001;gbkey=CDS;gene=cysE;go_function=serine O-acetyltransferase activity|0009001||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001112113.1;locus_tag=C9F05_RS18290;product=serine O-acetyltransferase;protein_id=WP_001112113.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	16447	17757	.	-	.	ID=gene-C9F05_RS18295;Name=C9F05_RS18295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18295;old_locus_tag=C9F05_18820
NZ_PYKE01000275.1	Protein Homology	CDS	16447	17757	.	-	0	ID=cds-WP_001092104.1;Parent=gene-C9F05_RS18295;Dbxref=GenBank:WP_001092104.1;Name=WP_001092104.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462598.1;locus_tag=C9F05_RS18295;product=MFS transporter;protein_id=WP_001092104.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	17831	19027	.	-	.	ID=gene-C9F05_RS18300;Name=C9F05_RS18300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18300;old_locus_tag=C9F05_18825
NZ_PYKE01000275.1	Protein Homology	CDS	17831	19027	.	-	0	ID=cds-WP_001218249.1;Parent=gene-C9F05_RS18300;Dbxref=GenBank:WP_001218249.1;Name=WP_001218249.1;Ontology_term=GO:0046392,GO:1903663,GO:0008867,GO:1990594;gbkey=CDS;go_function=galactarate dehydratase activity|0008867||IEA,L-altrarate dehydratase activity|1990594||IEA;go_process=galactarate catabolic process|0046392||IEA,L-altrarate catabolic process|1903663||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462597.1;locus_tag=C9F05_RS18300;product=L-talarate/galactarate dehydratase;protein_id=WP_001218249.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	19346	20350	.	+	.	ID=gene-C9F05_RS18305;Name=C9F05_RS18305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18305;old_locus_tag=C9F05_18835
NZ_PYKE01000275.1	Protein Homology	CDS	19346	20350	.	+	0	ID=cds-WP_001537635.1;Parent=gene-C9F05_RS18305;Dbxref=GenBank:WP_001537635.1;Name=WP_001537635.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462596.1;locus_tag=C9F05_RS18305;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_001537635.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	20418	20891	.	-	.	ID=gene-C9F05_RS18310;Name=trmL;gbkey=Gene;gene=trmL;gene_biotype=protein_coding;locus_tag=C9F05_RS18310;old_locus_tag=C9F05_18840
NZ_PYKE01000275.1	Protein Homology	CDS	20418	20891	.	-	0	ID=cds-WP_000932335.1;Parent=gene-C9F05_RS18310;Dbxref=GenBank:WP_000932335.1;Name=WP_000932335.1;Ontology_term=GO:0001510,GO:0008173;gbkey=CDS;gene=trmL;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000932331.1;locus_tag=C9F05_RS18310;product=tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL;protein_id=WP_000932335.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	20956	22146	.	-	.	ID=gene-C9F05_RS18315;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=C9F05_RS18315;old_locus_tag=C9F05_18845
NZ_PYKE01000275.1	Protein Homology	CDS	20956	22146	.	-	0	ID=cds-WP_000587002.1;Parent=gene-C9F05_RS18315;Dbxref=GenBank:WP_000587002.1;Name=WP_000587002.1;Ontology_term=GO:0006089,GO:0004457,GO:0010181;gbkey=CDS;gene=lldD;go_function=lactate dehydrogenase activity|0004457||IEA,FMN binding|0010181||IEA;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462594.1;locus_tag=C9F05_RS18315;product=FMN-dependent L-lactate dehydrogenase LldD;protein_id=WP_000587002.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	22143	22919	.	-	.	ID=gene-C9F05_RS18320;Name=lldR;gbkey=Gene;gene=lldR;gene_biotype=protein_coding;locus_tag=C9F05_RS18320;old_locus_tag=C9F05_18850
NZ_PYKE01000275.1	Protein Homology	CDS	22143	22919	.	-	0	ID=cds-WP_135370522.1;Parent=gene-C9F05_RS18320;Dbxref=GenBank:WP_135370522.1;Name=WP_135370522.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=lldR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462593.1;locus_tag=C9F05_RS18320;product=transcriptional regulator LldR;protein_id=WP_135370522.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	22916	24571	.	-	.	ID=gene-C9F05_RS18325;Name=lldP;gbkey=Gene;gene=lldP;gene_biotype=protein_coding;locus_tag=C9F05_RS18325;old_locus_tag=C9F05_18855
NZ_PYKE01000275.1	Protein Homology	CDS	22916	24571	.	-	0	ID=cds-WP_001055309.1;Parent=gene-C9F05_RS18325;Dbxref=GenBank:WP_001055309.1;Name=WP_001055309.1;Ontology_term=GO:0015727,GO:0015129,GO:0005886;gbkey=CDS;gene=lldP;go_component=plasma membrane|0005886||IEA;go_function=lactate transmembrane transporter activity|0015129||IEA;go_process=lactate transport|0015727||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462592.1;locus_tag=C9F05_RS18325;product=L-lactate permease;protein_id=WP_001055309.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	24870	29255	.	-	.	ID=gene-C9F05_RS18330;Name=sadA;gbkey=Gene;gene=sadA;gene_biotype=protein_coding;locus_tag=C9F05_RS18330;old_locus_tag=C9F05_18860
NZ_PYKE01000275.1	Protein Homology	CDS	24870	29255	.	-	0	ID=cds-WP_135370523.1;Parent=gene-C9F05_RS18330;Dbxref=GenBank:WP_135370523.1;Name=WP_135370523.1;gbkey=CDS;gene=sadA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462591.1;locus_tag=C9F05_RS18330;product=trimeric autotransporter adhesin SadA;protein_id=WP_135370523.1;transl_table=11
NZ_PYKE01000275.1	RefSeq	gene	29299	29980	.	-	.	ID=gene-C9F05_RS18335;Name=C9F05_RS18335;end_range=29980,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18335;old_locus_tag=C9F05_18865;partial=true
NZ_PYKE01000275.1	Protein Homology	CDS	29299	29980	.	-	1	ID=cds-WP_255121310.1;Parent=gene-C9F05_RS18335;Dbxref=GenBank:WP_255121310.1;Name=WP_255121310.1;end_range=29980,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462590.1;locus_tag=C9F05_RS18335;partial=true;product=DUF3251 domain-containing protein;protein_id=WP_255121310.1;transl_table=11
##sequence-region NZ_PYKE01000245.1 1 3973
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000245.1	RefSeq	region	1	3973	.	+	.	ID=NZ_PYKE01000245.1:1..3973;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000245.1	RefSeq	gene	227	445	.	-	.	ID=gene-C9F05_RS15730;Name=C9F05_RS15730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15730;old_locus_tag=C9F05_16165
NZ_PYKE01000245.1	Protein Homology	CDS	227	445	.	-	0	ID=cds-WP_000240779.1;Parent=gene-C9F05_RS15730;Dbxref=GenBank:WP_000240779.1;Name=WP_000240779.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000240778.1;locus_tag=C9F05_RS15730;product=helix-turn-helix transcriptional regulator;protein_id=WP_000240779.1;transl_table=11
NZ_PYKE01000245.1	RefSeq	gene	596	1471	.	-	.	ID=gene-C9F05_RS15735;Name=C9F05_RS15735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15735;old_locus_tag=C9F05_16170
NZ_PYKE01000245.1	Protein Homology	CDS	596	1471	.	-	0	ID=cds-WP_135370449.1;Parent=gene-C9F05_RS15735;Dbxref=GenBank:WP_135370449.1;Name=WP_135370449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000166882.1;locus_tag=C9F05_RS15735;product=DUF6387 family protein;protein_id=WP_135370449.1;transl_table=11
NZ_PYKE01000245.1	RefSeq	gene	2013	2294	.	+	.	ID=gene-C9F05_RS24055;Name=C9F05_RS24055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24055
NZ_PYKE01000245.1	Protein Homology	CDS	2013	2294	.	+	0	ID=cds-WP_001219035.1;Parent=gene-C9F05_RS24055;Dbxref=GenBank:WP_001219035.1;Name=WP_001219035.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835997.1;locus_tag=C9F05_RS24055;product=Arm DNA-binding domain-containing protein;protein_id=WP_001219035.1;transl_table=11
NZ_PYKE01000245.1	RefSeq	gene	2612	2953	.	-	.	ID=gene-C9F05_RS15750;Name=C9F05_RS15750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15750;old_locus_tag=C9F05_16190
NZ_PYKE01000245.1	Protein Homology	CDS	2612	2953	.	-	0	ID=cds-WP_023226656.1;Parent=gene-C9F05_RS15750;Dbxref=GenBank:WP_023226656.1;Name=WP_023226656.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000967787.1;locus_tag=C9F05_RS15750;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_023226656.1;transl_table=11
NZ_PYKE01000245.1	RefSeq	gene	3065	3625	.	+	.	ID=gene-C9F05_RS15755;Name=C9F05_RS15755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15755;old_locus_tag=C9F05_16195
NZ_PYKE01000245.1	Protein Homology	CDS	3065	3625	.	+	0	ID=cds-WP_437436344.1;Parent=gene-C9F05_RS15755;Dbxref=GenBank:WP_437436344.1;Name=WP_437436344.1;Ontology_term=GO:0008753,GO:0009055,GO:0010181,GO:0050136;gbkey=CDS;go_function=NADPH dehydrogenase (quinone) activity|0008753||IEA,electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,NADH dehydrogenase (quinone) (non-electrogenic) activity|0050136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000751883.1;locus_tag=C9F05_RS15755;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_437436344.1;transl_table=11
##sequence-region NZ_PYKE01000233.1 1 3926
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000233.1	RefSeq	region	1	3926	.	+	.	ID=NZ_PYKE01000233.1:1..3926;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000233.1	RefSeq	gene	141	515	.	-	.	ID=gene-C9F05_RS15305;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=C9F05_RS15305;old_locus_tag=C9F05_15740
NZ_PYKE01000233.1	cmsearch	RNase_P_RNA	141	515	.	-	.	ID=rna-C9F05_RS15305;Parent=gene-C9F05_RS15305;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS15305;product=RNase P RNA component class A
NZ_PYKE01000233.1	cmsearch	exon	141	515	.	-	.	ID=exon-C9F05_RS15305-1;Parent=rna-C9F05_RS15305;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS15305;product=RNase P RNA component class A
NZ_PYKE01000233.1	RefSeq	gene	548	1693	.	-	.	ID=gene-C9F05_RS15310;Name=garK;gbkey=Gene;gene=garK;gene_biotype=protein_coding;locus_tag=C9F05_RS15310;old_locus_tag=C9F05_15745
NZ_PYKE01000233.1	Protein Homology	CDS	548	1693	.	-	0	ID=cds-WP_001630908.1;Parent=gene-C9F05_RS15310;Dbxref=GenBank:WP_001630908.1;Name=WP_001630908.1;Ontology_term=GO:0031388,GO:0008887;gbkey=CDS;gene=garK;go_function=glycerate kinase activity|0008887||IEA;go_process=organic acid phosphorylation|0031388||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462160.1;locus_tag=C9F05_RS15310;product=glycerate 2-kinase;protein_id=WP_001630908.1;transl_table=11
NZ_PYKE01000233.1	RefSeq	gene	1791	2681	.	-	.	ID=gene-C9F05_RS15315;Name=garR;gbkey=Gene;gene=garR;gene_biotype=protein_coding;locus_tag=C9F05_RS15315;old_locus_tag=C9F05_15750
NZ_PYKE01000233.1	Protein Homology	CDS	1791	2681	.	-	0	ID=cds-WP_135370433.1;Parent=gene-C9F05_RS15315;Dbxref=GenBank:WP_135370433.1;Name=WP_135370433.1;Ontology_term=GO:0046487,GO:0008679;gbkey=CDS;gene=garR;go_function=2-hydroxy-3-oxopropionate reductase activity|0008679||IEA;go_process=glyoxylate metabolic process|0046487||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462161.1;locus_tag=C9F05_RS15315;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_135370433.1;transl_table=11
NZ_PYKE01000233.1	RefSeq	gene	2707	3477	.	-	.	ID=gene-C9F05_RS15320;Name=garL;gbkey=Gene;gene=garL;gene_biotype=protein_coding;locus_tag=C9F05_RS15320;old_locus_tag=C9F05_15755
NZ_PYKE01000233.1	Protein Homology	CDS	2707	3477	.	-	0	ID=cds-WP_001057715.1;Parent=gene-C9F05_RS15320;Dbxref=GenBank:WP_001057715.1;Name=WP_001057715.1;Ontology_term=GO:0019394,GO:0008672;gbkey=CDS;gene=garL;go_function=2-dehydro-3-deoxyglucarate aldolase activity|0008672||IEA;go_process=glucarate catabolic process|0019394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462162.1;locus_tag=C9F05_RS15320;product=2-dehydro-3-deoxyglucarate aldolase;protein_id=WP_001057715.1;transl_table=11
##sequence-region NZ_PYKE01000100.1 1 29429
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000100.1	RefSeq	region	1	29429	.	+	.	ID=NZ_PYKE01000100.1:1..29429;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000100.1	RefSeq	gene	14	844	.	-	.	ID=gene-C9F05_RS07260;Name=zirS;gbkey=Gene;gene=zirS;gene_biotype=protein_coding;locus_tag=C9F05_RS07260;old_locus_tag=C9F05_07415
NZ_PYKE01000100.1	Protein Homology	CDS	14	844	.	-	0	ID=cds-WP_001242941.1;Parent=gene-C9F05_RS07260;Dbxref=GenBank:WP_001242941.1;Name=WP_001242941.1;gbkey=CDS;gene=zirS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460626.1;locus_tag=C9F05_RS07260;product=two-partner-like secretion system exoprotein ZirS;protein_id=WP_001242941.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	865	2847	.	-	.	ID=gene-C9F05_RS07265;Name=zirT;gbkey=Gene;gene=zirT;gene_biotype=protein_coding;locus_tag=C9F05_RS07265;old_locus_tag=C9F05_07420
NZ_PYKE01000100.1	Protein Homology	CDS	865	2847	.	-	0	ID=cds-WP_115284808.1;Parent=gene-C9F05_RS07265;Dbxref=GenBank:WP_115284808.1;Name=WP_115284808.1;gbkey=CDS;gene=zirT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460627.1;locus_tag=C9F05_RS07265;product=two-partner secretion translocator ZirT;protein_id=WP_115284808.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	2922	3767	.	-	.	ID=gene-C9F05_RS07270;Name=zirU;gbkey=Gene;gene=zirU;gene_biotype=protein_coding;locus_tag=C9F05_RS07270;old_locus_tag=C9F05_07425
NZ_PYKE01000100.1	Protein Homology	CDS	2922	3767	.	-	0	ID=cds-WP_135370148.1;Parent=gene-C9F05_RS07270;Dbxref=GenBank:WP_135370148.1;Name=WP_135370148.1;gbkey=CDS;gene=zirU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460628.1;locus_tag=C9F05_RS07270;product=two-partner-like secretion system exoprotein ZirU;protein_id=WP_135370148.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	4061	4918	.	+	.	ID=gene-C9F05_RS07280;Name=C9F05_RS07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07280;old_locus_tag=C9F05_07430
NZ_PYKE01000100.1	Protein Homology	CDS	4061	4918	.	+	0	ID=cds-WP_010989022.1;Parent=gene-C9F05_RS07280;Dbxref=GenBank:WP_010989022.1;Name=WP_010989022.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460629.1;locus_tag=C9F05_RS07280;product=GyrI-like domain-containing protein;protein_id=WP_010989022.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	5310	6419	.	+	.	ID=gene-C9F05_RS07285;Name=C9F05_RS07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07285;old_locus_tag=C9F05_07435
NZ_PYKE01000100.1	Protein Homology	CDS	5310	6419	.	+	0	ID=cds-WP_079927884.1;Parent=gene-C9F05_RS07285;Dbxref=GenBank:WP_079927884.1;Name=WP_079927884.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448089.1;locus_tag=C9F05_RS07285;product=hypothetical protein;protein_id=WP_079927884.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	6633	6869	.	-	.	ID=gene-C9F05_RS07290;Name=C9F05_RS07290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07290;old_locus_tag=C9F05_07440
NZ_PYKE01000100.1	Protein Homology	CDS	6633	6869	.	-	0	ID=cds-WP_001168016.1;Parent=gene-C9F05_RS07290;Dbxref=GenBank:WP_001168016.1;Name=WP_001168016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001168019.1;locus_tag=C9F05_RS07290;product=YgdI/YgdR family lipoprotein;protein_id=WP_001168016.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	6998	7588	.	-	.	ID=gene-C9F05_RS07295;Name=C9F05_RS07295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07295;old_locus_tag=C9F05_07445
NZ_PYKE01000100.1	Protein Homology	CDS	6998	7588	.	-	0	ID=cds-WP_000208474.1;Parent=gene-C9F05_RS07295;Dbxref=GenBank:WP_000208474.1;Name=WP_000208474.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460632.1;locus_tag=C9F05_RS07295;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000208474.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	7666	8379	.	+	.	ID=gene-C9F05_RS07300;Name=bdcA;gbkey=Gene;gene=bdcA;gene_biotype=protein_coding;locus_tag=C9F05_RS07300;old_locus_tag=C9F05_07450
NZ_PYKE01000100.1	Protein Homology	CDS	7666	8379	.	+	0	ID=cds-WP_135370149.1;Parent=gene-C9F05_RS07300;Dbxref=GenBank:WP_135370149.1;Name=WP_135370149.1;Ontology_term=GO:0016491;gbkey=CDS;gene=bdcA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460633.1;locus_tag=C9F05_RS07300;product=SDR family oxidoreductase;protein_id=WP_135370149.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	8470	9339	.	-	.	ID=gene-C9F05_RS07305;Name=C9F05_RS07305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07305;old_locus_tag=C9F05_07455
NZ_PYKE01000100.1	Protein Homology	CDS	8470	9339	.	-	0	ID=cds-WP_000456775.1;Parent=gene-C9F05_RS07305;Dbxref=GenBank:WP_000456775.1;Name=WP_000456775.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460634.1;locus_tag=C9F05_RS07305;product=aldo/keto reductase;protein_id=WP_000456775.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	9616	10521	.	-	.	ID=gene-C9F05_RS07310;Name=C9F05_RS07310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07310;old_locus_tag=C9F05_07460
NZ_PYKE01000100.1	Protein Homology	CDS	9616	10521	.	-	0	ID=cds-WP_023201119.1;Parent=gene-C9F05_RS07310;Dbxref=GenBank:WP_023201119.1;Name=WP_023201119.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460635.1;locus_tag=C9F05_RS07310;product=LysR family transcriptional regulator;protein_id=WP_023201119.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	10640	11569	.	+	.	ID=gene-C9F05_RS07315;Name=C9F05_RS07315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07315;old_locus_tag=C9F05_07465
NZ_PYKE01000100.1	Protein Homology	CDS	10640	11569	.	+	0	ID=cds-WP_135370150.1;Parent=gene-C9F05_RS07315;Dbxref=GenBank:WP_135370150.1;Name=WP_135370150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460636.1;locus_tag=C9F05_RS07315;product=aromatic alcohol reductase;protein_id=WP_135370150.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	11665	13278	.	-	.	ID=gene-C9F05_RS07320;Name=C9F05_RS07320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07320;old_locus_tag=C9F05_07470
NZ_PYKE01000100.1	Protein Homology	CDS	11665	13278	.	-	0	ID=cds-WP_001216553.1;Parent=gene-C9F05_RS07320;Dbxref=GenBank:WP_001216553.1;Name=WP_001216553.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460637.1;locus_tag=C9F05_RS07320;product=peptide ABC transporter substrate-binding protein;protein_id=WP_001216553.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	13468	14196	.	+	.	ID=gene-C9F05_RS07325;Name=mpaA;gbkey=Gene;gene=mpaA;gene_biotype=protein_coding;locus_tag=C9F05_RS07325;old_locus_tag=C9F05_07475
NZ_PYKE01000100.1	Protein Homology	CDS	13468	14196	.	+	0	ID=cds-WP_000219108.1;Parent=gene-C9F05_RS07325;Dbxref=GenBank:WP_000219108.1;Name=WP_000219108.1;Ontology_term=GO:0006508,GO:0004181,GO:0008270;gbkey=CDS;gene=mpaA;go_function=metallocarboxypeptidase activity|0004181||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460638.1;locus_tag=C9F05_RS07325;product=murein tripeptide amidase MpaA;protein_id=WP_000219108.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	14171	15136	.	-	.	ID=gene-C9F05_RS07330;Name=ycjG;gbkey=Gene;gene=ycjG;gene_biotype=protein_coding;locus_tag=C9F05_RS07330;old_locus_tag=C9F05_07480
NZ_PYKE01000100.1	Protein Homology	CDS	14171	15136	.	-	0	ID=cds-WP_080230037.1;Parent=gene-C9F05_RS07330;Dbxref=GenBank:WP_080230037.1;Name=WP_080230037.1;Ontology_term=GO:0009063,GO:0016855;gbkey=CDS;gene=ycjG;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460639.1;locus_tag=C9F05_RS07330;product=L-Ala-D/L-Glu epimerase;protein_id=WP_080230037.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	15252	15758	.	+	.	ID=gene-C9F05_RS07335;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=C9F05_RS07335;old_locus_tag=C9F05_07485
NZ_PYKE01000100.1	Protein Homology	CDS	15252	15758	.	+	0	ID=cds-WP_000084401.1;Parent=gene-C9F05_RS07335;Dbxref=GenBank:WP_000084401.1;Name=WP_000084401.1;Ontology_term=GO:0008379,GO:0016684;gbkey=CDS;gene=tpx;go_function=thioredoxin peroxidase activity|0008379||IEA,oxidoreductase activity%2C acting on peroxide as acceptor|0016684||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460640.1;locus_tag=C9F05_RS07335;product=thiol peroxidase;protein_id=WP_000084401.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	15848	17389	.	-	.	ID=gene-C9F05_RS07340;Name=tyrR;gbkey=Gene;gene=tyrR;gene_biotype=protein_coding;locus_tag=C9F05_RS07340;old_locus_tag=C9F05_07490
NZ_PYKE01000100.1	Protein Homology	CDS	15848	17389	.	-	0	ID=cds-WP_001235493.1;Parent=gene-C9F05_RS07340;Dbxref=GenBank:WP_001235493.1;Name=WP_001235493.1;Ontology_term=GO:0006355,GO:0008134;gbkey=CDS;gene=tyrR;go_function=transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460641.1;locus_tag=C9F05_RS07340;product=transcriptional regulator TyrR;protein_id=WP_001235493.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	17537	18598	.	-	.	ID=gene-C9F05_RS07345;Name=C9F05_RS07345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07345;old_locus_tag=C9F05_07495
NZ_PYKE01000100.1	Protein Homology	CDS	17537	18598	.	-	0	ID=cds-WP_001294472.1;Parent=gene-C9F05_RS07345;Dbxref=GenBank:WP_001294472.1;Name=WP_001294472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460642.1;locus_tag=C9F05_RS07345;product=TIGR01620 family protein;protein_id=WP_001294472.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	18595	19992	.	-	.	ID=gene-C9F05_RS07350;Name=C9F05_RS07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07350;old_locus_tag=C9F05_07500
NZ_PYKE01000100.1	Protein Homology	CDS	18595	19992	.	-	0	ID=cds-WP_167851657.1;Parent=gene-C9F05_RS07350;Dbxref=GenBank:WP_167851657.1;Name=WP_167851657.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126510.1;locus_tag=C9F05_RS07350;product=YcjX family protein;protein_id=WP_167851657.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	20141	20455	.	-	.	ID=gene-C9F05_RS07355;Name=pspE;gbkey=Gene;gene=pspE;gene_biotype=protein_coding;locus_tag=C9F05_RS07355;old_locus_tag=C9F05_07505
NZ_PYKE01000100.1	Protein Homology	CDS	20141	20455	.	-	0	ID=cds-WP_135370152.1;Parent=gene-C9F05_RS07355;Dbxref=GenBank:WP_135370152.1;Name=WP_135370152.1;gbkey=CDS;gene=pspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460644.1;locus_tag=C9F05_RS07355;product=thiosulfate sulfurtransferase PspE;protein_id=WP_135370152.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	20531	20749	.	-	.	ID=gene-C9F05_RS07360;Name=pspD;gbkey=Gene;gene=pspD;gene_biotype=protein_coding;locus_tag=C9F05_RS07360;old_locus_tag=C9F05_07510
NZ_PYKE01000100.1	Protein Homology	CDS	20531	20749	.	-	0	ID=cds-WP_001097607.1;Parent=gene-C9F05_RS07360;Dbxref=GenBank:WP_001097607.1;Name=WP_001097607.1;gbkey=CDS;gene=pspD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460645.1;locus_tag=C9F05_RS07360;product=phage shock protein PspD;protein_id=WP_001097607.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	20772	21131	.	-	.	ID=gene-C9F05_RS07365;Name=pspC;gbkey=Gene;gene=pspC;gene_biotype=protein_coding;locus_tag=C9F05_RS07365;old_locus_tag=C9F05_07515
NZ_PYKE01000100.1	Protein Homology	CDS	20772	21131	.	-	0	ID=cds-WP_000508938.1;Parent=gene-C9F05_RS07365;Dbxref=GenBank:WP_000508938.1;Name=WP_000508938.1;gbkey=CDS;gene=pspC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460646.1;locus_tag=C9F05_RS07365;product=envelope stress response membrane protein PspC;protein_id=WP_000508938.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	21131	21355	.	-	.	ID=gene-C9F05_RS07370;Name=pspB;gbkey=Gene;gene=pspB;gene_biotype=protein_coding;locus_tag=C9F05_RS07370;old_locus_tag=C9F05_07520
NZ_PYKE01000100.1	Protein Homology	CDS	21131	21355	.	-	0	ID=cds-WP_001274953.1;Parent=gene-C9F05_RS07370;Dbxref=GenBank:WP_001274953.1;Name=WP_001274953.1;Ontology_term=GO:0009271;gbkey=CDS;gene=pspB;go_process=phage shock|0009271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460647.1;locus_tag=C9F05_RS07370;product=envelope stress response membrane protein PspB;protein_id=WP_001274953.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	21415	22083	.	-	.	ID=gene-C9F05_RS07375;Name=pspA;gbkey=Gene;gene=pspA;gene_biotype=protein_coding;locus_tag=C9F05_RS07375;old_locus_tag=C9F05_07525
NZ_PYKE01000100.1	Protein Homology	CDS	21415	22083	.	-	0	ID=cds-WP_000511010.1;Parent=gene-C9F05_RS07375;Dbxref=GenBank:WP_000511010.1;Name=WP_000511010.1;gbkey=CDS;gene=pspA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460648.1;locus_tag=C9F05_RS07375;product=phage shock protein PspA;protein_id=WP_000511010.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	22254	23234	.	+	.	ID=gene-C9F05_RS07380;Name=pspF;gbkey=Gene;gene=pspF;gene_biotype=protein_coding;locus_tag=C9F05_RS07380;old_locus_tag=C9F05_07530
NZ_PYKE01000100.1	Protein Homology	CDS	22254	23234	.	+	0	ID=cds-WP_001675625.1;Parent=gene-C9F05_RS07380;Dbxref=GenBank:WP_001675625.1;Name=WP_001675625.1;gbkey=CDS;gene=pspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460649.1;locus_tag=C9F05_RS07380;product=phage shock protein operon transcriptional activator;protein_id=WP_001675625.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	23346	24995	.	+	.	ID=gene-C9F05_RS07385;Name=sapA;gbkey=Gene;gene=sapA;gene_biotype=protein_coding;locus_tag=C9F05_RS07385;old_locus_tag=C9F05_07535
NZ_PYKE01000100.1	Protein Homology	CDS	23346	24995	.	+	0	ID=cds-WP_001241628.1;Parent=gene-C9F05_RS07385;Dbxref=GenBank:WP_001241628.1;Name=WP_001241628.1;gbkey=CDS;gene=sapA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460650.1;locus_tag=C9F05_RS07385;product=peptide ABC transporter substrate-binding protein SapA;protein_id=WP_001241628.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	24992	25957	.	+	.	ID=gene-C9F05_RS07390;Name=sapB;gbkey=Gene;gene=sapB;gene_biotype=protein_coding;locus_tag=C9F05_RS07390;old_locus_tag=C9F05_07540
NZ_PYKE01000100.1	Protein Homology	CDS	24992	25957	.	+	0	ID=cds-WP_000583298.1;Parent=gene-C9F05_RS07390;Dbxref=GenBank:WP_000583298.1;Name=WP_000583298.1;gbkey=CDS;gene=sapB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126482.1;locus_tag=C9F05_RS07390;product=peptide ABC transporter permease SapB;protein_id=WP_000583298.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	25944	26834	.	+	.	ID=gene-C9F05_RS07395;Name=sapC;gbkey=Gene;gene=sapC;gene_biotype=protein_coding;locus_tag=C9F05_RS07395;old_locus_tag=C9F05_07545
NZ_PYKE01000100.1	Protein Homology	CDS	25944	26834	.	+	0	ID=cds-WP_001146150.1;Parent=gene-C9F05_RS07395;Dbxref=GenBank:WP_001146150.1;Name=WP_001146150.1;gbkey=CDS;gene=sapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460652.1;locus_tag=C9F05_RS07395;product=peptide ABC transporter permease SapC;protein_id=WP_001146150.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	26834	27826	.	+	.	ID=gene-C9F05_RS07400;Name=sapD;gbkey=Gene;gene=sapD;gene_biotype=protein_coding;locus_tag=C9F05_RS07400;old_locus_tag=C9F05_07550
NZ_PYKE01000100.1	Protein Homology	CDS	26834	27826	.	+	0	ID=cds-WP_135370153.1;Parent=gene-C9F05_RS07400;Dbxref=GenBank:WP_135370153.1;Name=WP_135370153.1;gbkey=CDS;gene=sapD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460653.1;locus_tag=C9F05_RS07400;product=peptide ABC transporter ATP-binding protein SapD;protein_id=WP_135370153.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	27828	28634	.	+	.	ID=gene-C9F05_RS07405;Name=sapF;gbkey=Gene;gene=sapF;gene_biotype=protein_coding;locus_tag=C9F05_RS07405;old_locus_tag=C9F05_07555
NZ_PYKE01000100.1	Protein Homology	CDS	27828	28634	.	+	0	ID=cds-WP_000230462.1;Parent=gene-C9F05_RS07405;Dbxref=GenBank:WP_000230462.1;Name=WP_000230462.1;gbkey=CDS;gene=sapF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460654.1;locus_tag=C9F05_RS07405;product=peptide ABC transporter ATP-binding protein SapF;protein_id=WP_000230462.1;transl_table=11
NZ_PYKE01000100.1	RefSeq	gene	28650	29357	.	-	.	ID=gene-C9F05_RS07410;Name=C9F05_RS07410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07410;old_locus_tag=C9F05_07560
NZ_PYKE01000100.1	Protein Homology	CDS	28650	29357	.	-	0	ID=cds-WP_031605277.1;Parent=gene-C9F05_RS07410;Dbxref=GenBank:WP_031605277.1;Name=WP_031605277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748430.1;locus_tag=C9F05_RS07410;product=EAL domain-containing protein;protein_id=WP_031605277.1;transl_table=11
##sequence-region NZ_PYKE01000291.1 1 69153
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000291.1	RefSeq	region	1	69153	.	+	.	ID=NZ_PYKE01000291.1:1..69153;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000291.1	RefSeq	gene	319	1605	.	-	.	ID=gene-C9F05_RS19300;Name=C9F05_RS19300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19300;old_locus_tag=C9F05_19840
NZ_PYKE01000291.1	Protein Homology	CDS	319	1605	.	-	0	ID=cds-WP_000219714.1;Parent=gene-C9F05_RS19300;Dbxref=GenBank:WP_000219714.1;Name=WP_000219714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460250.1;locus_tag=C9F05_RS19300;product=YeaH/YhbH family protein;protein_id=WP_000219714.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	1728	3662	.	-	.	ID=gene-C9F05_RS19305;Name=yeaG;gbkey=Gene;gene=yeaG;gene_biotype=protein_coding;locus_tag=C9F05_RS19305;old_locus_tag=C9F05_19845
NZ_PYKE01000291.1	Protein Homology	CDS	1728	3662	.	-	0	ID=cds-WP_001518010.1;Parent=gene-C9F05_RS19305;Dbxref=GenBank:WP_001518010.1;Name=WP_001518010.1;gbkey=CDS;gene=yeaG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011411173.1;locus_tag=C9F05_RS19305;product=protein kinase YeaG;protein_id=WP_001518010.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	4090	4836	.	+	.	ID=gene-C9F05_RS19310;Name=C9F05_RS19310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19310;old_locus_tag=C9F05_19850
NZ_PYKE01000291.1	Protein Homology	CDS	4090	4836	.	+	0	ID=cds-WP_000163762.1;Parent=gene-C9F05_RS19310;Dbxref=GenBank:WP_000163762.1;Name=WP_000163762.1;Ontology_term=GO:0009252,GO:0030674,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=protein-macromolecule adaptor activity|0030674||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460252.1;locus_tag=C9F05_RS19310;product=MipA/OmpV family protein;protein_id=WP_000163762.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	5126	6322	.	+	.	ID=gene-C9F05_RS19315;Name=C9F05_RS19315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19315;old_locus_tag=C9F05_19855
NZ_PYKE01000291.1	Protein Homology	CDS	5126	6322	.	+	0	ID=cds-WP_023233856.1;Parent=gene-C9F05_RS19315;Dbxref=GenBank:WP_023233856.1;Name=WP_023233856.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460253.1;locus_tag=C9F05_RS19315;product=anaerobic sulfatase maturase;protein_id=WP_023233856.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	6419	7276	.	+	.	ID=gene-C9F05_RS19320;Name=C9F05_RS19320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19320;old_locus_tag=C9F05_19860
NZ_PYKE01000291.1	Protein Homology	CDS	6419	7276	.	+	0	ID=cds-WP_000843751.1;Parent=gene-C9F05_RS19320;Dbxref=GenBank:WP_000843751.1;Name=WP_000843751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460254.1;locus_tag=C9F05_RS19320;product=aldo/keto reductase;protein_id=WP_000843751.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	7375	8259	.	-	.	ID=gene-C9F05_RS19325;Name=C9F05_RS19325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19325;old_locus_tag=C9F05_19865
NZ_PYKE01000291.1	Protein Homology	CDS	7375	8259	.	-	0	ID=cds-WP_000608652.1;Parent=gene-C9F05_RS19325;Dbxref=GenBank:WP_000608652.1;Name=WP_000608652.1;Ontology_term=GO:0005975,GO:0016857;gbkey=CDS;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460255.1;locus_tag=C9F05_RS19325;product=D-hexose-6-phosphate mutarotase;protein_id=WP_000608652.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	8593	9588	.	-	.	ID=gene-C9F05_RS19335;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=C9F05_RS19335;old_locus_tag=C9F05_19875
NZ_PYKE01000291.1	Protein Homology	CDS	8593	9588	.	-	0	ID=cds-WP_000153505.1;Parent=gene-C9F05_RS19335;Dbxref=GenBank:WP_000153505.1;Name=WP_000153505.1;gbkey=CDS;gene=gapA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006322611.1;locus_tag=C9F05_RS19335;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_000153505.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	9930	10343	.	+	.	ID=gene-C9F05_RS19340;Name=msrB;gbkey=Gene;gene=msrB;gene_biotype=protein_coding;locus_tag=C9F05_RS19340;old_locus_tag=C9F05_19880
NZ_PYKE01000291.1	Protein Homology	CDS	9930	10343	.	+	0	ID=cds-WP_001519539.1;Parent=gene-C9F05_RS19340;Dbxref=GenBank:WP_001519539.1;Name=WP_001519539.1;Ontology_term=GO:0006979,GO:0030091,GO:0033743;gbkey=CDS;gene=msrB;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310514.1;locus_tag=C9F05_RS19340;product=peptide-methionine (R)-S-oxide reductase MsrB;protein_id=WP_001519539.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	10385	10663	.	+	.	ID=gene-C9F05_RS19345;Name=C9F05_RS19345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19345;old_locus_tag=C9F05_19885
NZ_PYKE01000291.1	Protein Homology	CDS	10385	10663	.	+	0	ID=cds-WP_001046864.1;Parent=gene-C9F05_RS19345;Dbxref=GenBank:WP_001046864.1;Name=WP_001046864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460258.1;locus_tag=C9F05_RS19345;product=YeaC family protein;protein_id=WP_001046864.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	pseudogene	10839	11262	.	-	.	ID=gene-C9F05_RS23900;Name=C9F05_RS23900;end_range=11262,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23900;partial=true;pseudo=true;start_range=.,10839
NZ_PYKE01000291.1	Protein Homology	CDS	10839	11262	.	-	0	ID=cds-C9F05_RS23900;Parent=gene-C9F05_RS23900;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0005975;end_range=11262,.;gbkey=CDS;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004892855.1;locus_tag=C9F05_RS23900;partial=true;product=glycosyl hydrolase family 18 protein;pseudo=true;start_range=.,10839;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	11558	12634	.	+	.	ID=gene-C9F05_RS19355;Name=C9F05_RS19355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19355;old_locus_tag=C9F05_19895
NZ_PYKE01000291.1	Protein Homology	CDS	11558	12634	.	+	0	ID=cds-WP_000645183.1;Parent=gene-C9F05_RS19355;Dbxref=GenBank:WP_000645183.1;Name=WP_000645183.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310512.1;locus_tag=C9F05_RS19355;product=zinc-binding dehydrogenase;protein_id=WP_000645183.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	12661	14040	.	+	.	ID=gene-C9F05_RS19360;Name=C9F05_RS19360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19360;old_locus_tag=C9F05_19900
NZ_PYKE01000291.1	Protein Homology	CDS	12661	14040	.	+	0	ID=cds-WP_000435326.1;Parent=gene-C9F05_RS19360;Dbxref=GenBank:WP_000435326.1;Name=WP_000435326.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416289.1;locus_tag=C9F05_RS19360;product=MFS transporter;protein_id=WP_000435326.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	14051	15094	.	+	.	ID=gene-C9F05_RS19365;Name=C9F05_RS19365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19365;old_locus_tag=C9F05_19905
NZ_PYKE01000291.1	Protein Homology	CDS	14051	15094	.	+	0	ID=cds-WP_001624385.1;Parent=gene-C9F05_RS19365;Dbxref=GenBank:WP_001624385.1;Name=WP_001624385.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416288.1;locus_tag=C9F05_RS19365;product=NAD(P)-dependent alcohol dehydrogenase;protein_id=WP_001624385.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	15116	15952	.	+	.	ID=gene-C9F05_RS19370;Name=C9F05_RS19370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19370;old_locus_tag=C9F05_19910
NZ_PYKE01000291.1	Protein Homology	CDS	15116	15952	.	+	0	ID=cds-WP_000878867.1;Parent=gene-C9F05_RS19370;Dbxref=GenBank:WP_000878867.1;Name=WP_000878867.1;Ontology_term=GO:0005975,GO:0016832;gbkey=CDS;go_function=aldehyde-lyase activity|0016832||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416287.1;locus_tag=C9F05_RS19370;product=ketose-bisphosphate aldolase;protein_id=WP_000878867.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	15957	16904	.	+	.	ID=gene-C9F05_RS19375;Name=C9F05_RS19375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19375;old_locus_tag=C9F05_19915
NZ_PYKE01000291.1	Protein Homology	CDS	15957	16904	.	+	0	ID=cds-WP_000343332.1;Parent=gene-C9F05_RS19375;Dbxref=GenBank:WP_000343332.1;Name=WP_000343332.1;Ontology_term=GO:0005975,GO:0019200,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416286.4;locus_tag=C9F05_RS19375;product=sugar kinase;protein_id=WP_000343332.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	16914	17897	.	+	.	ID=gene-C9F05_RS19380;Name=ydjG;gbkey=Gene;gene=ydjG;gene_biotype=protein_coding;locus_tag=C9F05_RS19380;old_locus_tag=C9F05_19920
NZ_PYKE01000291.1	Protein Homology	CDS	16914	17897	.	+	0	ID=cds-WP_135370554.1;Parent=gene-C9F05_RS19380;Dbxref=GenBank:WP_135370554.1;Name=WP_135370554.1;Ontology_term=GO:0019170;gbkey=CDS;gene=ydjG;go_function=methylglyoxal reductase (NADH) activity|0019170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000782140.1;locus_tag=C9F05_RS19380;product=NADH-dependent methylglyoxal reductase;protein_id=WP_135370554.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	18027	18785	.	+	.	ID=gene-C9F05_RS19385;Name=C9F05_RS19385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19385;old_locus_tag=C9F05_19925
NZ_PYKE01000291.1	Protein Homology	CDS	18027	18785	.	+	0	ID=cds-WP_000719104.1;Parent=gene-C9F05_RS19385;Dbxref=GenBank:WP_000719104.1;Name=WP_000719104.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226392.1;locus_tag=C9F05_RS19385;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000719104.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	18921	20279	.	+	.	ID=gene-C9F05_RS19390;Name=C9F05_RS19390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19390;old_locus_tag=C9F05_19930
NZ_PYKE01000291.1	Protein Homology	CDS	18921	20279	.	+	0	ID=cds-WP_023209894.1;Parent=gene-C9F05_RS19390;Dbxref=GenBank:WP_023209894.1;Name=WP_023209894.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000389924.1;locus_tag=C9F05_RS19390;product=MFS transporter;protein_id=WP_023209894.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	20382	21038	.	-	.	ID=gene-C9F05_RS19395;Name=pncA;gbkey=Gene;gene=pncA;gene_biotype=protein_coding;locus_tag=C9F05_RS19395;old_locus_tag=C9F05_19935
NZ_PYKE01000291.1	Protein Homology	CDS	20382	21038	.	-	0	ID=cds-WP_000184707.1;Parent=gene-C9F05_RS19395;Dbxref=GenBank:WP_000184707.1;Name=WP_000184707.1;gbkey=CDS;gene=pncA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460259.1;locus_tag=C9F05_RS19395;product=bifunctional nicotinamidase/pyrazinamidase;protein_id=WP_000184707.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	21065	22081	.	-	.	ID=gene-C9F05_RS19400;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;locus_tag=C9F05_RS19400;old_locus_tag=C9F05_19940
NZ_PYKE01000291.1	Protein Homology	CDS	21065	22081	.	-	0	ID=cds-WP_001170134.1;Parent=gene-C9F05_RS19400;Dbxref=GenBank:WP_001170134.1;Name=WP_001170134.1;Ontology_term=GO:0006520,GO:0004067;gbkey=CDS;gene=ansA;go_function=asparaginase activity|0004067||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460260.1;locus_tag=C9F05_RS19400;product=asparaginase;protein_id=WP_001170134.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	22177	24033	.	-	.	ID=gene-C9F05_RS19405;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=C9F05_RS19405;old_locus_tag=C9F05_19945
NZ_PYKE01000291.1	Protein Homology	CDS	22177	24033	.	-	0	ID=cds-WP_001259874.1;Parent=gene-C9F05_RS19405;Dbxref=GenBank:WP_001259874.1;Name=WP_001259874.1;Ontology_term=GO:0006465,GO:0008233;gbkey=CDS;gene=sppA;go_function=peptidase activity|0008233||IEA;go_process=signal peptide processing|0006465||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460261.1;locus_tag=C9F05_RS19405;product=signal peptide peptidase SppA;protein_id=WP_001259874.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	24207	24758	.	+	.	ID=gene-C9F05_RS19410;Name=C9F05_RS19410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19410;old_locus_tag=C9F05_19950
NZ_PYKE01000291.1	Protein Homology	CDS	24207	24758	.	+	0	ID=cds-WP_031605404.1;Parent=gene-C9F05_RS19410;Dbxref=GenBank:WP_031605404.1;Name=WP_031605404.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460262.1;locus_tag=C9F05_RS19410;product=NAD(P)H nitroreductase;protein_id=WP_031605404.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	24876	25919	.	+	.	ID=gene-C9F05_RS19415;Name=selD;gbkey=Gene;gene=selD;gene_biotype=protein_coding;locus_tag=C9F05_RS19415;old_locus_tag=C9F05_19955
NZ_PYKE01000291.1	Protein Homology	CDS	24876	25919	.	+	0	ID=cds-WP_001294900.1;Parent=gene-C9F05_RS19415;Dbxref=GenBank:WP_001294900.1;Name=WP_001294900.1;Ontology_term=GO:0016260,GO:0004756;gbkey=CDS;gene=selD;go_function=selenide%2C water dikinase activity|0004756||IEA;go_process=selenocysteine biosynthetic process|0016260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460263.1;locus_tag=C9F05_RS19415;product=selenide%2C water dikinase SelD;protein_id=WP_001294900.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	25924	27873	.	+	.	ID=gene-C9F05_RS19420;Name=topB;gbkey=Gene;gene=topB;gene_biotype=protein_coding;locus_tag=C9F05_RS19420;old_locus_tag=C9F05_19960
NZ_PYKE01000291.1	Protein Homology	CDS	25924	27873	.	+	0	ID=cds-WP_001235874.1;Parent=gene-C9F05_RS19420;Dbxref=GenBank:WP_001235874.1;Name=WP_001235874.1;gbkey=CDS;gene=topB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460264.1;locus_tag=C9F05_RS19420;product=DNA topoisomerase III;protein_id=WP_001235874.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	27903	29246	.	-	.	ID=gene-C9F05_RS19425;Name=gdhA;gbkey=Gene;gene=gdhA;gene_biotype=protein_coding;locus_tag=C9F05_RS19425;old_locus_tag=C9F05_19965
NZ_PYKE01000291.1	Protein Homology	CDS	27903	29246	.	-	0	ID=cds-WP_000372865.1;Parent=gene-C9F05_RS19425;Dbxref=GenBank:WP_000372865.1;Name=WP_000372865.1;Ontology_term=GO:0006520,GO:0016639;gbkey=CDS;gene=gdhA;go_function=oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor|0016639||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460265.1;locus_tag=C9F05_RS19425;product=NADP-specific glutamate dehydrogenase;protein_id=WP_000372865.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	29485	29760	.	+	.	ID=gene-C9F05_RS19430;Name=C9F05_RS19430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19430;old_locus_tag=C9F05_19970
NZ_PYKE01000291.1	Protein Homology	CDS	29485	29760	.	+	0	ID=cds-WP_001254683.1;Parent=gene-C9F05_RS19430;Dbxref=GenBank:WP_001254683.1;Name=WP_001254683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465441.1;locus_tag=C9F05_RS19430;product=YnjH family protein;protein_id=WP_001254683.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	29720	30136	.	-	.	ID=gene-C9F05_RS19435;Name=C9F05_RS19435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19435;old_locus_tag=C9F05_19975
NZ_PYKE01000291.1	Protein Homology	CDS	29720	30136	.	-	0	ID=cds-WP_000592136.1;Parent=gene-C9F05_RS19435;Dbxref=GenBank:WP_000592136.1;Name=WP_000592136.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460267.1;locus_tag=C9F05_RS19435;product=pyrimidine (deoxy)nucleoside triphosphate diphosphatase;protein_id=WP_000592136.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	30209	31015	.	-	.	ID=gene-C9F05_RS19440;Name=xthA;gbkey=Gene;gene=xthA;gene_biotype=protein_coding;locus_tag=C9F05_RS19440;old_locus_tag=C9F05_19980
NZ_PYKE01000291.1	Protein Homology	CDS	30209	31015	.	-	0	ID=cds-WP_000673951.1;Parent=gene-C9F05_RS19440;Dbxref=GenBank:WP_000673951.1;Name=WP_000673951.1;Ontology_term=GO:0006281,GO:0003677,GO:0004519,GO:0008311;gbkey=CDS;gene=xthA;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA,double-stranded DNA 3'-5' DNA exonuclease activity|0008311||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460268.1;locus_tag=C9F05_RS19440;product=exodeoxyribonuclease III;protein_id=WP_000673951.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	31461	32687	.	+	.	ID=gene-C9F05_RS19445;Name=astC;gbkey=Gene;gene=astC;gene_biotype=protein_coding;locus_tag=C9F05_RS19445;old_locus_tag=C9F05_19990
NZ_PYKE01000291.1	Protein Homology	CDS	31461	32687	.	+	0	ID=cds-WP_135370555.1;Parent=gene-C9F05_RS19445;Dbxref=GenBank:WP_135370555.1;Name=WP_135370555.1;gbkey=CDS;gene=astC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460269.1;locus_tag=C9F05_RS19445;product=succinylornithine/acetylornithine transaminase;protein_id=WP_135370555.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	32678	33712	.	+	.	ID=gene-C9F05_RS19450;Name=astA;gbkey=Gene;gene=astA;gene_biotype=protein_coding;locus_tag=C9F05_RS19450;old_locus_tag=C9F05_19995
NZ_PYKE01000291.1	Protein Homology	CDS	32678	33712	.	+	0	ID=cds-WP_058115918.1;Parent=gene-C9F05_RS19450;Dbxref=GenBank:WP_058115918.1;Name=WP_058115918.1;Ontology_term=GO:0006527,GO:0008791;gbkey=CDS;gene=astA;go_function=arginine N-succinyltransferase activity|0008791||IEA;go_process=L-arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460270.1;locus_tag=C9F05_RS19450;product=arginine N-succinyltransferase;protein_id=WP_058115918.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	33709	35187	.	+	.	ID=gene-C9F05_RS19455;Name=astD;gbkey=Gene;gene=astD;gene_biotype=protein_coding;locus_tag=C9F05_RS19455;old_locus_tag=C9F05_20000
NZ_PYKE01000291.1	Protein Homology	CDS	33709	35187	.	+	0	ID=cds-WP_001748365.1;Parent=gene-C9F05_RS19455;Dbxref=GenBank:WP_001748365.1;Name=WP_001748365.1;Ontology_term=GO:0006527,GO:0043824;gbkey=CDS;gene=astD;go_function=succinylglutamate-semialdehyde dehydrogenase activity|0043824||IEA;go_process=L-arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460271.1;locus_tag=C9F05_RS19455;product=succinylglutamate-semialdehyde dehydrogenase;protein_id=WP_001748365.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	35184	36527	.	+	.	ID=gene-C9F05_RS19460;Name=astB;gbkey=Gene;gene=astB;gene_biotype=protein_coding;locus_tag=C9F05_RS19460;old_locus_tag=C9F05_20005
NZ_PYKE01000291.1	Protein Homology	CDS	35184	36527	.	+	0	ID=cds-WP_000123949.1;Parent=gene-C9F05_RS19460;Dbxref=GenBank:WP_000123949.1;Name=WP_000123949.1;Ontology_term=GO:0006527,GO:0009015;gbkey=CDS;gene=astB;go_function=N-succinylarginine dihydrolase activity|0009015||IEA;go_process=L-arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460272.1;locus_tag=C9F05_RS19460;product=N-succinylarginine dihydrolase;protein_id=WP_000123949.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	36520	37488	.	+	.	ID=gene-C9F05_RS19465;Name=astE;gbkey=Gene;gene=astE;gene_biotype=protein_coding;locus_tag=C9F05_RS19465;old_locus_tag=C9F05_20010
NZ_PYKE01000291.1	Protein Homology	CDS	36520	37488	.	+	0	ID=cds-WP_135370556.1;Parent=gene-C9F05_RS19465;Dbxref=GenBank:WP_135370556.1;Name=WP_135370556.1;Ontology_term=GO:0006527,GO:0008270,GO:0009017;gbkey=CDS;gene=astE;go_function=zinc ion binding|0008270||IEA,succinylglutamate desuccinylase activity|0009017||IEA;go_process=L-arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460273.1;locus_tag=C9F05_RS19465;product=succinylglutamate desuccinylase;protein_id=WP_135370556.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	37823	38308	.	+	.	ID=gene-C9F05_RS19470;Name=spy;gbkey=Gene;gene=spy;gene_biotype=protein_coding;locus_tag=C9F05_RS19470;old_locus_tag=C9F05_20020
NZ_PYKE01000291.1	Protein Homology	CDS	37823	38308	.	+	0	ID=cds-WP_135370557.1;Parent=gene-C9F05_RS19470;Dbxref=GenBank:WP_135370557.1;Name=WP_135370557.1;Ontology_term=GO:0042597;gbkey=CDS;gene=spy;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460274.1;locus_tag=C9F05_RS19470;product=ATP-independent periplasmic protein-refolding chaperone Spy;protein_id=WP_135370557.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	38383	39264	.	-	.	ID=gene-C9F05_RS19475;Name=cho;gbkey=Gene;gene=cho;gene_biotype=protein_coding;locus_tag=C9F05_RS19475;old_locus_tag=C9F05_20025
NZ_PYKE01000291.1	Protein Homology	CDS	38383	39264	.	-	0	ID=cds-WP_001518228.1;Parent=gene-C9F05_RS19475;Dbxref=GenBank:WP_001518228.1;Name=WP_001518228.1;gbkey=CDS;gene=cho;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011233065.1;locus_tag=C9F05_RS19475;product=excinuclease Cho;protein_id=WP_001518228.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	39385	40212	.	-	.	ID=gene-C9F05_RS19480;Name=nadE;gbkey=Gene;gene=nadE;gene_biotype=protein_coding;locus_tag=C9F05_RS19480;old_locus_tag=C9F05_20030
NZ_PYKE01000291.1	Protein Homology	CDS	39385	40212	.	-	0	ID=cds-WP_000174981.1;Parent=gene-C9F05_RS19480;Dbxref=GenBank:WP_000174981.1;Name=WP_000174981.1;Ontology_term=GO:0009435,GO:0003952,GO:0004359,GO:0008795;gbkey=CDS;gene=nadE;go_function=NAD+ synthase (glutamine-hydrolyzing) activity|0003952||IEA,glutaminase activity|0004359||IEA,NAD+ synthase activity|0008795||IEA;go_process=NAD+ biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460276.1;locus_tag=C9F05_RS19480;product=ammonia-dependent NAD(+) synthetase;protein_id=WP_000174981.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	40431	40772	.	+	.	ID=gene-C9F05_RS19485;Name=osmE;gbkey=Gene;gene=osmE;gene_biotype=protein_coding;locus_tag=C9F05_RS19485;old_locus_tag=C9F05_20035
NZ_PYKE01000291.1	Protein Homology	CDS	40431	40772	.	+	0	ID=cds-WP_001039301.1;Parent=gene-C9F05_RS19485;Dbxref=GenBank:WP_001039301.1;Name=WP_001039301.1;Ontology_term=GO:0019867;gbkey=CDS;gene=osmE;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460277.1;locus_tag=C9F05_RS19485;product=osmotically-inducible lipoprotein OsmE;protein_id=WP_001039301.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	41073	41393	.	+	.	ID=gene-C9F05_RS19495;Name=chbB;gbkey=Gene;gene=chbB;gene_biotype=protein_coding;locus_tag=C9F05_RS19495;old_locus_tag=C9F05_20045
NZ_PYKE01000291.1	Protein Homology	CDS	41073	41393	.	+	0	ID=cds-WP_000412161.1;Parent=gene-C9F05_RS19495;Dbxref=GenBank:WP_000412161.1;Name=WP_000412161.1;gbkey=CDS;gene=chbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460278.1;locus_tag=C9F05_RS19495;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIB;protein_id=WP_000412161.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	41476	42834	.	+	.	ID=gene-C9F05_RS19500;Name=chbC;gbkey=Gene;gene=chbC;gene_biotype=protein_coding;locus_tag=C9F05_RS19500;old_locus_tag=C9F05_20050
NZ_PYKE01000291.1	Protein Homology	CDS	41476	42834	.	+	0	ID=cds-WP_000073067.1;Parent=gene-C9F05_RS19500;Dbxref=GenBank:WP_000073067.1;Name=WP_000073067.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;gene=chbC;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460279.1;locus_tag=C9F05_RS19500;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIC;protein_id=WP_000073067.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	42885	43232	.	+	.	ID=gene-C9F05_RS19505;Name=chbA;gbkey=Gene;gene=chbA;gene_biotype=protein_coding;locus_tag=C9F05_RS19505;old_locus_tag=C9F05_20055
NZ_PYKE01000291.1	Protein Homology	CDS	42885	43232	.	+	0	ID=cds-WP_135370558.1;Parent=gene-C9F05_RS19505;Dbxref=GenBank:WP_135370558.1;Name=WP_135370558.1;gbkey=CDS;gene=chbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460280.1;locus_tag=C9F05_RS19505;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIA;protein_id=WP_135370558.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	43243	44085	.	+	.	ID=gene-C9F05_RS19510;Name=chbR;gbkey=Gene;gene=chbR;gene_biotype=protein_coding;locus_tag=C9F05_RS19510;old_locus_tag=C9F05_20060
NZ_PYKE01000291.1	Protein Homology	CDS	43243	44085	.	+	0	ID=cds-WP_000983393.1;Parent=gene-C9F05_RS19510;Dbxref=GenBank:WP_000983393.1;Name=WP_000983393.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=chbR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460281.1;locus_tag=C9F05_RS19510;product=transcriptional regulator ChbR;protein_id=WP_000983393.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	44210	45565	.	+	.	ID=gene-C9F05_RS19515;Name=C9F05_RS19515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19515;old_locus_tag=C9F05_20065
NZ_PYKE01000291.1	Protein Homology	CDS	44210	45565	.	+	0	ID=cds-WP_000078777.1;Parent=gene-C9F05_RS19515;Dbxref=GenBank:WP_000078777.1;Name=WP_000078777.1;Ontology_term=GO:0005975,GO:0008706,GO:0046872;gbkey=CDS;go_function=6-phospho-beta-glucosidase activity|0008706||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460282.1;locus_tag=C9F05_RS19515;product=6-phospho-beta-glucosidase;protein_id=WP_000078777.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	45578	46336	.	+	.	ID=gene-C9F05_RS19520;Name=chbG;gbkey=Gene;gene=chbG;gene_biotype=protein_coding;locus_tag=C9F05_RS19520;old_locus_tag=C9F05_20070
NZ_PYKE01000291.1	Protein Homology	CDS	45578	46336	.	+	0	ID=cds-WP_000442730.1;Parent=gene-C9F05_RS19520;Dbxref=GenBank:WP_000442730.1;Name=WP_000442730.1;Ontology_term=GO:0000272,GO:0016811;gbkey=CDS;gene=chbG;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides|0016811||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460283.1;locus_tag=C9F05_RS19520;product=chitin disaccharide deacetylase;protein_id=WP_000442730.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	46380	48632	.	-	.	ID=gene-C9F05_RS19525;Name=katE;gbkey=Gene;gene=katE;gene_biotype=protein_coding;locus_tag=C9F05_RS19525;old_locus_tag=C9F05_20075
NZ_PYKE01000291.1	Protein Homology	CDS	46380	48632	.	-	0	ID=cds-WP_135370559.1;Parent=gene-C9F05_RS19525;Dbxref=GenBank:WP_135370559.1;Name=WP_135370559.1;Ontology_term=GO:0006979,GO:0004096,GO:0020037;gbkey=CDS;gene=katE;go_function=catalase activity|0004096||IEA,heme binding|0020037||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460284.1;locus_tag=C9F05_RS19525;product=catalase HPII;protein_id=WP_135370559.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	48997	49239	.	+	.	ID=gene-C9F05_RS19530;Name=cedA;gbkey=Gene;gene=cedA;gene_biotype=protein_coding;locus_tag=C9F05_RS19530;old_locus_tag=C9F05_20080
NZ_PYKE01000291.1	Protein Homology	CDS	48997	49239	.	+	0	ID=cds-WP_000977510.1;Parent=gene-C9F05_RS19530;Dbxref=GenBank:WP_000977510.1;Name=WP_000977510.1;gbkey=CDS;gene=cedA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460285.1;locus_tag=C9F05_RS19530;product=cell division activator CedA;protein_id=WP_000977510.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	49342	50733	.	-	.	ID=gene-C9F05_RS19535;Name=tcyP;gbkey=Gene;gene=tcyP;gene_biotype=protein_coding;locus_tag=C9F05_RS19535;old_locus_tag=C9F05_20085
NZ_PYKE01000291.1	Protein Homology	CDS	49342	50733	.	-	0	ID=cds-WP_001010662.1;Parent=gene-C9F05_RS19535;Dbxref=GenBank:WP_001010662.1;Name=WP_001010662.1;gbkey=CDS;gene=tcyP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120792.1;locus_tag=C9F05_RS19535;product=cystine/sulfocysteine:cation symporter;protein_id=WP_001010662.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	50870	51469	.	-	.	ID=gene-C9F05_RS19540;Name=C9F05_RS19540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19540;old_locus_tag=C9F05_20090
NZ_PYKE01000291.1	Protein Homology	CDS	50870	51469	.	-	0	ID=cds-WP_000505804.1;Parent=gene-C9F05_RS19540;Dbxref=GenBank:WP_000505804.1;Name=WP_000505804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460287.3;locus_tag=C9F05_RS19540;product=metal-dependent hydrolase;protein_id=WP_000505804.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	51607	52275	.	-	.	ID=gene-C9F05_RS19545;Name=hxpB;gbkey=Gene;gene=hxpB;gene_biotype=protein_coding;locus_tag=C9F05_RS19545;old_locus_tag=C9F05_20095
NZ_PYKE01000291.1	Protein Homology	CDS	51607	52275	.	-	0	ID=cds-WP_000106854.1;Parent=gene-C9F05_RS19545;Dbxref=GenBank:WP_000106854.1;Name=WP_000106854.1;gbkey=CDS;gene=hxpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460288.1;locus_tag=C9F05_RS19545;product=hexitol phosphatase HxpB;protein_id=WP_000106854.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	52424	52960	.	+	.	ID=gene-C9F05_RS19550;Name=C9F05_RS19550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19550;old_locus_tag=C9F05_20100
NZ_PYKE01000291.1	Protein Homology	CDS	52424	52960	.	+	0	ID=cds-WP_000222158.1;Parent=gene-C9F05_RS19550;Dbxref=GenBank:WP_000222158.1;Name=WP_000222158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460289.1;locus_tag=C9F05_RS19550;product=YniB family protein;protein_id=WP_000222158.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	53003	53863	.	-	.	ID=gene-C9F05_RS19555;Name=C9F05_RS19555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19555;old_locus_tag=C9F05_20105
NZ_PYKE01000291.1	Protein Homology	CDS	53003	53863	.	-	0	ID=cds-WP_000267686.1;Parent=gene-C9F05_RS19555;Dbxref=GenBank:WP_000267686.1;Name=WP_000267686.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460290.1;locus_tag=C9F05_RS19555;product=fructosamine kinase family protein;protein_id=WP_000267686.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	53970	54260	.	-	.	ID=gene-C9F05_RS19560;Name=ghoS;gbkey=Gene;gene=ghoS;gene_biotype=protein_coding;locus_tag=C9F05_RS19560;old_locus_tag=C9F05_20110
NZ_PYKE01000291.1	Protein Homology	CDS	53970	54260	.	-	0	ID=cds-WP_000146129.1;Parent=gene-C9F05_RS19560;Dbxref=GenBank:WP_000146129.1;Name=WP_000146129.1;Ontology_term=GO:0004521;gbkey=CDS;gene=ghoS;go_function=RNA endonuclease activity|0004521||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460291.1;locus_tag=C9F05_RS19560;product=type V toxin-antitoxin system endoribonuclease antitoxin GhoS;protein_id=WP_000146129.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	54357	55289	.	-	.	ID=gene-C9F05_RS19565;Name=pfkB;gbkey=Gene;gene=pfkB;gene_biotype=protein_coding;locus_tag=C9F05_RS19565;old_locus_tag=C9F05_20115
NZ_PYKE01000291.1	Protein Homology	CDS	54357	55289	.	-	0	ID=cds-WP_000251707.1;Parent=gene-C9F05_RS19565;Dbxref=GenBank:WP_000251707.1;Name=WP_000251707.1;Ontology_term=GO:0005975,GO:0016773;gbkey=CDS;gene=pfkB;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460292.1;locus_tag=C9F05_RS19565;product=6-phosphofructokinase II;protein_id=WP_000251707.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	55578	56336	.	+	.	ID=gene-C9F05_RS19570;Name=C9F05_RS19570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19570;old_locus_tag=C9F05_20120
NZ_PYKE01000291.1	Protein Homology	CDS	55578	56336	.	+	0	ID=cds-WP_000770981.1;Parent=gene-C9F05_RS19570;Dbxref=GenBank:WP_000770981.1;Name=WP_000770981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460293.1;locus_tag=C9F05_RS19570;product=DUF481 domain-containing protein;protein_id=WP_000770981.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	56385	57344	.	-	.	ID=gene-C9F05_RS19575;Name=C9F05_RS19575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19575;old_locus_tag=C9F05_20125
NZ_PYKE01000291.1	Protein Homology	CDS	56385	57344	.	-	0	ID=cds-WP_135370560.1;Parent=gene-C9F05_RS19575;Dbxref=GenBank:WP_135370560.1;Name=WP_135370560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460294.1;locus_tag=C9F05_RS19575;product=lipid A deacylase LpxR family protein;protein_id=WP_135370560.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	pseudogene	57487	57801	.	+	.	ID=gene-C9F05_RS19580;Name=C9F05_RS19580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS19580;old_locus_tag=C9F05_20130;pseudo=true
NZ_PYKE01000291.1	Protein Homology	CDS	57487	57801	.	+	0	ID=cds-C9F05_RS19580;Parent=gene-C9F05_RS19580;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460295.1;locus_tag=C9F05_RS19580;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	57798	58652	.	+	.	ID=gene-C9F05_RS19585;Name=C9F05_RS19585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19585;old_locus_tag=C9F05_20135
NZ_PYKE01000291.1	Protein Homology	CDS	57798	58652	.	+	0	ID=cds-WP_001044089.1;Parent=gene-C9F05_RS19585;Dbxref=GenBank:WP_001044089.1;Name=WP_001044089.1;Ontology_term=GO:0003676,GO:0004519,GO:0046872;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460296.1;locus_tag=C9F05_RS19585;product=DNA/RNA non-specific endonuclease;protein_id=WP_001044089.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	58912	60840	.	+	.	ID=gene-C9F05_RS19590;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=C9F05_RS19590;old_locus_tag=C9F05_20140
NZ_PYKE01000291.1	Protein Homology	CDS	58912	60840	.	+	0	ID=cds-WP_023255121.1;Parent=gene-C9F05_RS19590;Dbxref=GenBank:WP_023255121.1;Name=WP_023255121.1;Ontology_term=GO:0006435,GO:0004829,GO:0005524,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA,ATP binding|0005524||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894721.1;locus_tag=C9F05_RS19590;product=threonine--tRNA ligase;protein_id=WP_023255121.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	60844	61386	.	+	.	ID=gene-C9F05_RS19595;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=C9F05_RS19595;old_locus_tag=C9F05_20145
NZ_PYKE01000291.1	Protein Homology	CDS	60844	61386	.	+	0	ID=cds-WP_001574431.1;Parent=gene-C9F05_RS19595;Dbxref=GenBank:WP_001574431.1;Name=WP_001574431.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310452.1;locus_tag=C9F05_RS19595;product=translation initiation factor IF-3;protein_id=WP_001574431.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	61482	61679	.	+	.	ID=gene-C9F05_RS19600;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=C9F05_RS19600;old_locus_tag=C9F05_20150
NZ_PYKE01000291.1	Protein Homology	CDS	61482	61679	.	+	0	ID=cds-WP_001124225.1;Parent=gene-C9F05_RS19600;Dbxref=GenBank:WP_001124225.1;Name=WP_001124225.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006708231.1;locus_tag=C9F05_RS19600;product=50S ribosomal protein L35;protein_id=WP_001124225.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	61730	62086	.	+	.	ID=gene-C9F05_RS19605;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=C9F05_RS19605;old_locus_tag=C9F05_20155
NZ_PYKE01000291.1	Protein Homology	CDS	61730	62086	.	+	0	ID=cds-WP_000124850.1;Parent=gene-C9F05_RS19605;Dbxref=GenBank:WP_000124850.1;Name=WP_000124850.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplT;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310450.1;locus_tag=C9F05_RS19605;product=50S ribosomal protein L20;protein_id=WP_000124850.1;transl_table=11
NZ_PYKE01000291.1	cmsearch	sequence_feature	62202	62325	.	+	.	ID=id-NZ_PYKE01000291.1:62202..62325;Dbxref=RFAM:RF01859;Note=Phe leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYKE01000291.1	RefSeq	gene	62207	62251	.	+	.	ID=gene-C9F05_RS19610;Name=pheM;gbkey=Gene;gene=pheM;gene_biotype=protein_coding;locus_tag=C9F05_RS19610;old_locus_tag=C9F05_20160
NZ_PYKE01000291.1	Protein Homology	CDS	62207	62251	.	+	0	ID=cds-WP_001386830.1;Parent=gene-C9F05_RS19610;Dbxref=GenBank:WP_001386830.1;Name=WP_001386830.1;Ontology_term=GO:0031556;gbkey=CDS;gene=pheM;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310449.1;locus_tag=C9F05_RS19610;product=pheST operon leader peptide PheM;protein_id=WP_001386830.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	62388	63371	.	+	.	ID=gene-C9F05_RS19615;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=C9F05_RS19615;old_locus_tag=C9F05_20165
NZ_PYKE01000291.1	Protein Homology	CDS	62388	63371	.	+	0	ID=cds-WP_000018570.1;Parent=gene-C9F05_RS19615;Dbxref=GenBank:WP_000018570.1;Name=WP_000018570.1;Ontology_term=GO:0006432,GO:0000166,GO:0004826,GO:0005524,GO:0005737;gbkey=CDS;gene=pheS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004851795.1;locus_tag=C9F05_RS19615;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_000018570.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	63387	65774	.	+	.	ID=gene-C9F05_RS19620;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=C9F05_RS19620;old_locus_tag=C9F05_20170
NZ_PYKE01000291.1	Protein Homology	CDS	63387	65774	.	+	0	ID=cds-WP_135370562.1;Parent=gene-C9F05_RS19620;Dbxref=GenBank:WP_135370562.1;Name=WP_135370562.1;Ontology_term=GO:0006432,GO:0000287,GO:0004826,GO:0005524;gbkey=CDS;gene=pheT;go_function=magnesium ion binding|0000287||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460304.1;locus_tag=C9F05_RS19620;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_135370562.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	65779	66078	.	+	.	ID=gene-C9F05_RS19625;Name=ihfA;gbkey=Gene;gene=ihfA;gene_biotype=protein_coding;locus_tag=C9F05_RS19625;old_locus_tag=C9F05_20175
NZ_PYKE01000291.1	Protein Homology	CDS	65779	66078	.	+	0	ID=cds-WP_001229266.1;Parent=gene-C9F05_RS19625;Dbxref=GenBank:WP_001229266.1;Name=WP_001229266.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677;gbkey=CDS;gene=ihfA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460305.1;locus_tag=C9F05_RS19625;product=integration host factor subunit alpha;protein_id=WP_001229266.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	66281	67261	.	+	.	ID=gene-C9F05_RS19630;Name=btuC;gbkey=Gene;gene=btuC;gene_biotype=protein_coding;locus_tag=C9F05_RS19630;old_locus_tag=C9F05_20180
NZ_PYKE01000291.1	Protein Homology	CDS	66281	67261	.	+	0	ID=cds-WP_080197375.1;Parent=gene-C9F05_RS19630;Dbxref=GenBank:WP_080197375.1;Name=WP_080197375.1;Ontology_term=GO:0005524,GO:0022857;gbkey=CDS;gene=btuC;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460306.1;locus_tag=C9F05_RS19630;product=vitamin B12 ABC transporter permease BtuC;protein_id=WP_080197375.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	67353	67904	.	+	.	ID=gene-C9F05_RS19635;Name=C9F05_RS19635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19635;old_locus_tag=C9F05_20185
NZ_PYKE01000291.1	Protein Homology	CDS	67353	67904	.	+	0	ID=cds-WP_001181565.1;Parent=gene-C9F05_RS19635;Dbxref=GenBank:WP_001181565.1;Name=WP_001181565.1;Ontology_term=GO:0006979,GO:0004602;gbkey=CDS;go_function=glutathione peroxidase activity|0004602||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460307.1;locus_tag=C9F05_RS19635;product=glutathione peroxidase;protein_id=WP_001181565.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	67904	68653	.	+	.	ID=gene-C9F05_RS19640;Name=btuD;gbkey=Gene;gene=btuD;gene_biotype=protein_coding;locus_tag=C9F05_RS19640;old_locus_tag=C9F05_20190
NZ_PYKE01000291.1	Protein Homology	CDS	67904	68653	.	+	0	ID=cds-WP_135370563.1;Parent=gene-C9F05_RS19640;Dbxref=GenBank:WP_135370563.1;Name=WP_135370563.1;Ontology_term=GO:0015889,GO:0005524;gbkey=CDS;gene=btuD;go_function=ATP binding|0005524||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460308.1;locus_tag=C9F05_RS19640;product=vitamin B12 ABC transporter ATP-binding protein BtuD;protein_id=WP_135370563.1;transl_table=11
NZ_PYKE01000291.1	RefSeq	gene	68730	69153	.	+	.	ID=gene-C9F05_RS19645;Name=C9F05_RS19645;end_range=69153,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19645;old_locus_tag=C9F05_20195;partial=true
NZ_PYKE01000291.1	Protein Homology	CDS	68730	69153	.	+	0	ID=cds-WP_135370564.1;Parent=gene-C9F05_RS19645;Dbxref=GenBank:WP_135370564.1;Name=WP_135370564.1;Ontology_term=GO:0000270,GO:0006508,GO:0008233,GO:0008234,GO:0016787;end_range=69153,.;gbkey=CDS;go_function=peptidase activity|0008233||IEA,cysteine-type peptidase activity|0008234||IEA,hydrolase activity|0016787||IEA;go_process=peptidoglycan metabolic process|0000270||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460309.1;locus_tag=C9F05_RS19645;partial=true;product=C40 family peptidase;protein_id=WP_135370564.1;transl_table=11
##sequence-region NZ_PYKE01000178.1 1 3742
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000178.1	RefSeq	region	1	3742	.	+	.	ID=NZ_PYKE01000178.1:1..3742;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000178.1	RefSeq	gene	326	2044	.	+	.	ID=gene-C9F05_RS12115;Name=C9F05_RS12115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12115;old_locus_tag=C9F05_12460
NZ_PYKE01000178.1	Protein Homology	CDS	326	2044	.	+	0	ID=cds-WP_135370315.1;Parent=gene-C9F05_RS12115;Dbxref=GenBank:WP_135370315.1;Name=WP_135370315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459037.1;locus_tag=C9F05_RS12115;product=aryl-sulfate sulfotransferase;protein_id=WP_135370315.1;transl_table=11
NZ_PYKE01000178.1	RefSeq	gene	2090	3661	.	-	.	ID=gene-C9F05_RS12120;Name=C9F05_RS12120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12120;old_locus_tag=C9F05_12465
NZ_PYKE01000178.1	Protein Homology	CDS	2090	3661	.	-	0	ID=cds-WP_000262866.1;Parent=gene-C9F05_RS12120;Dbxref=GenBank:WP_000262866.1;Name=WP_000262866.1;Ontology_term=GO:0009166,GO:0000166,GO:0008253,GO:0042578,GO:0046872;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,5'-nucleotidase activity|0008253||IEA,phosphoric ester hydrolase activity|0042578||IEA,metal ion binding|0046872||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459038.1;locus_tag=C9F05_RS12120;product=bifunctional metallophosphatase/5'-nucleotidase;protein_id=WP_000262866.1;transl_table=11
##sequence-region NZ_PYKE01000255.1 1 29403
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000255.1	RefSeq	region	1	29403	.	+	.	ID=NZ_PYKE01000255.1:1..29403;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000255.1	RefSeq	gene	1	214	.	-	.	ID=gene-C9F05_RS16495;Name=C9F05_RS16495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16495;old_locus_tag=C9F05_16970;partial=true;start_range=.,1
NZ_PYKE01000255.1	Protein Homology	CDS	1	214	.	-	0	ID=cds-WP_000031662.1-2;Parent=gene-C9F05_RS16495;Dbxref=GenBank:WP_000031662.1;Name=WP_000031662.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=C9F05_RS16495;partial=true;product=GTP-binding protein;protein_id=WP_000031662.1;start_range=.,1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	286	2400	.	-	.	ID=gene-C9F05_RS16500;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=C9F05_RS16500;old_locus_tag=C9F05_16975
NZ_PYKE01000255.1	Protein Homology	CDS	286	2400	.	-	0	ID=cds-WP_000124693.1;Parent=gene-C9F05_RS16500;Dbxref=GenBank:WP_000124693.1;Name=WP_000124693.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020455498.1;locus_tag=C9F05_RS16500;product=elongation factor G;protein_id=WP_000124693.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	2497	2967	.	-	.	ID=gene-C9F05_RS16505;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=C9F05_RS16505;old_locus_tag=C9F05_16980
NZ_PYKE01000255.1	Protein Homology	CDS	2497	2967	.	-	0	ID=cds-WP_001138042.1;Parent=gene-C9F05_RS16505;Dbxref=GenBank:WP_001138042.1;Name=WP_001138042.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsG;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742319.1;locus_tag=C9F05_RS16505;product=30S ribosomal protein S7;protein_id=WP_001138042.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	3063	3437	.	-	.	ID=gene-C9F05_RS16510;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=C9F05_RS16510;old_locus_tag=C9F05_16985
NZ_PYKE01000255.1	Protein Homology	CDS	3063	3437	.	-	0	ID=cds-WP_000246815.1;Parent=gene-C9F05_RS16510;Dbxref=GenBank:WP_000246815.1;Name=WP_000246815.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsL;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005306278.1;locus_tag=C9F05_RS16510;product=30S ribosomal protein S12;protein_id=WP_000246815.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	3563	3850	.	-	.	ID=gene-C9F05_RS16515;Name=tusB;gbkey=Gene;gene=tusB;gene_biotype=protein_coding;locus_tag=C9F05_RS16515;old_locus_tag=C9F05_16990
NZ_PYKE01000255.1	Protein Homology	CDS	3563	3850	.	-	0	ID=cds-WP_135370476.1;Parent=gene-C9F05_RS16515;Dbxref=GenBank:WP_135370476.1;Name=WP_135370476.1;Ontology_term=GO:0002143;gbkey=CDS;gene=tusB;go_process=tRNA wobble position uridine thiolation|0002143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462353.1;locus_tag=C9F05_RS16515;product=sulfurtransferase complex subunit TusB;protein_id=WP_135370476.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	3858	4214	.	-	.	ID=gene-C9F05_RS16520;Name=tusC;gbkey=Gene;gene=tusC;gene_biotype=protein_coding;locus_tag=C9F05_RS16520;old_locus_tag=C9F05_16995
NZ_PYKE01000255.1	Protein Homology	CDS	3858	4214	.	-	0	ID=cds-WP_023250746.1;Parent=gene-C9F05_RS16520;Dbxref=GenBank:WP_023250746.1;Name=WP_023250746.1;gbkey=CDS;gene=tusC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462354.1;locus_tag=C9F05_RS16520;product=sulfurtransferase complex subunit TusC;protein_id=WP_023250746.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	4214	4600	.	-	.	ID=gene-C9F05_RS16525;Name=tusD;gbkey=Gene;gene=tusD;gene_biotype=protein_coding;locus_tag=C9F05_RS16525;old_locus_tag=C9F05_17000
NZ_PYKE01000255.1	Protein Homology	CDS	4214	4600	.	-	0	ID=cds-WP_001268011.1;Parent=gene-C9F05_RS16525;Dbxref=GenBank:WP_001268011.1;Name=WP_001268011.1;Ontology_term=GO:0008033,GO:0016783;gbkey=CDS;gene=tusD;go_function=sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462355.1;locus_tag=C9F05_RS16525;product=sulfurtransferase complex subunit TusD;protein_id=WP_001268011.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	4600	5322	.	-	.	ID=gene-C9F05_RS16530;Name=C9F05_RS16530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16530;old_locus_tag=C9F05_17005
NZ_PYKE01000255.1	Protein Homology	CDS	4600	5322	.	-	0	ID=cds-WP_000091471.1;Parent=gene-C9F05_RS16530;Dbxref=GenBank:WP_000091471.1;Name=WP_000091471.1;Ontology_term=GO:0006355,GO:0007165,GO:0003677,GO:0003700,GO:0005515,GO:0140110;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,protein binding|0005515||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462356.1;locus_tag=C9F05_RS16530;product=helix-turn-helix transcriptional regulator;protein_id=WP_000091471.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	5599	6417	.	-	.	ID=gene-C9F05_RS16535;Name=fkpA;gbkey=Gene;gene=fkpA;gene_biotype=protein_coding;locus_tag=C9F05_RS16535;old_locus_tag=C9F05_17010
NZ_PYKE01000255.1	Protein Homology	CDS	5599	6417	.	-	0	ID=cds-WP_000838222.1;Parent=gene-C9F05_RS16535;Dbxref=GenBank:WP_000838222.1;Name=WP_000838222.1;Ontology_term=GO:0006457,GO:0003755;gbkey=CDS;gene=fkpA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462357.1;locus_tag=C9F05_RS16535;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000838222.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	6637	6855	.	+	.	ID=gene-C9F05_RS16540;Name=C9F05_RS16540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16540;old_locus_tag=C9F05_17015
NZ_PYKE01000255.1	Protein Homology	CDS	6637	6855	.	+	0	ID=cds-WP_001152701.1;Parent=gene-C9F05_RS16540;Dbxref=GenBank:WP_001152701.1;Name=WP_001152701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462358.1;locus_tag=C9F05_RS16540;product=protein SlyX;protein_id=WP_001152701.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	7044	7634	.	-	.	ID=gene-C9F05_RS16545;Name=slyD;gbkey=Gene;gene=slyD;gene_biotype=protein_coding;locus_tag=C9F05_RS16545;old_locus_tag=C9F05_17025
NZ_PYKE01000255.1	Protein Homology	CDS	7044	7634	.	-	0	ID=cds-WP_000861341.1;Parent=gene-C9F05_RS16545;Dbxref=GenBank:WP_000861341.1;Name=WP_000861341.1;Ontology_term=GO:0003755;gbkey=CDS;gene=slyD;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462359.1;locus_tag=C9F05_RS16545;product=peptidylprolyl isomerase;protein_id=WP_000861341.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	7729	7929	.	-	.	ID=gene-C9F05_RS16550;Name=C9F05_RS16550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16550;old_locus_tag=C9F05_17030
NZ_PYKE01000255.1	Protein Homology	CDS	7729	7929	.	-	0	ID=cds-WP_001007735.1;Parent=gene-C9F05_RS16550;Dbxref=GenBank:WP_001007735.1;Name=WP_001007735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462360.1;locus_tag=C9F05_RS16550;product=YheV family putative zinc ribbon protein;protein_id=WP_001007735.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	7939	9744	.	-	.	ID=gene-C9F05_RS16555;Name=kefB;gbkey=Gene;gene=kefB;gene_biotype=protein_coding;locus_tag=C9F05_RS16555;old_locus_tag=C9F05_17035
NZ_PYKE01000255.1	Protein Homology	CDS	7939	9744	.	-	0	ID=cds-WP_017465352.1;Parent=gene-C9F05_RS16555;Dbxref=GenBank:WP_017465352.1;Name=WP_017465352.1;Ontology_term=GO:0006813,GO:0015503;gbkey=CDS;gene=kefB;go_function=glutathione-regulated potassium exporter activity|0015503||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462361.1;locus_tag=C9F05_RS16555;product=glutathione-regulated potassium-efflux system protein KefB;protein_id=WP_017465352.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	9744	10295	.	-	.	ID=gene-C9F05_RS16560;Name=kefG;gbkey=Gene;gene=kefG;gene_biotype=protein_coding;locus_tag=C9F05_RS16560;old_locus_tag=C9F05_17040
NZ_PYKE01000255.1	Protein Homology	CDS	9744	10295	.	-	0	ID=cds-WP_000081820.1;Parent=gene-C9F05_RS16560;Dbxref=GenBank:WP_000081820.1;Name=WP_000081820.1;Ontology_term=GO:0006813;gbkey=CDS;gene=kefG;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462362.1;locus_tag=C9F05_RS16560;product=glutathione-regulated potassium-efflux system ancillary protein KefG;protein_id=WP_000081820.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	10561	12468	.	+	.	ID=gene-C9F05_RS16565;Name=C9F05_RS16565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16565;old_locus_tag=C9F05_17045
NZ_PYKE01000255.1	Protein Homology	CDS	10561	12468	.	+	0	ID=cds-WP_000634758.1;Parent=gene-C9F05_RS16565;Dbxref=GenBank:WP_000634758.1;Name=WP_000634758.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462363.1;locus_tag=C9F05_RS16565;product=ABC transporter ATP-binding protein;protein_id=WP_000634758.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	12507	12728	.	+	.	ID=gene-C9F05_RS16570;Name=C9F05_RS16570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16570;old_locus_tag=C9F05_17050
NZ_PYKE01000255.1	Protein Homology	CDS	12507	12728	.	+	0	ID=cds-WP_023204108.1;Parent=gene-C9F05_RS16570;Dbxref=GenBank:WP_023204108.1;Name=WP_023204108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001054026.1;locus_tag=C9F05_RS16570;product=LysR family transcriptional regulator;protein_id=WP_023204108.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	12730	13041	.	-	.	ID=gene-C9F05_RS16575;Name=C9F05_RS16575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16575;old_locus_tag=C9F05_17055
NZ_PYKE01000255.1	Protein Homology	CDS	12730	13041	.	-	0	ID=cds-WP_023204109.1;Parent=gene-C9F05_RS16575;Dbxref=GenBank:WP_023204109.1;Name=WP_023204109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462364.1;locus_tag=C9F05_RS16575;product=monooxygenase;protein_id=WP_023204109.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	13239	14306	.	+	.	ID=gene-C9F05_RS16580;Name=C9F05_RS16580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16580;old_locus_tag=C9F05_17065
NZ_PYKE01000255.1	Protein Homology	CDS	13239	14306	.	+	0	ID=cds-WP_001214115.1;Parent=gene-C9F05_RS16580;Dbxref=GenBank:WP_001214115.1;Name=WP_001214115.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462365.1;locus_tag=C9F05_RS16580;product=hydrolase;protein_id=WP_001214115.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	14303	14521	.	+	.	ID=gene-C9F05_RS16585;Name=C9F05_RS16585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16585;old_locus_tag=C9F05_17070
NZ_PYKE01000255.1	Protein Homology	CDS	14303	14521	.	+	0	ID=cds-WP_000586568.1;Parent=gene-C9F05_RS16585;Dbxref=GenBank:WP_000586568.1;Name=WP_000586568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312232.1;locus_tag=C9F05_RS16585;product=YheU family protein;protein_id=WP_000586568.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	14573	15442	.	+	.	ID=gene-C9F05_RS16590;Name=C9F05_RS16590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16590;old_locus_tag=C9F05_17075
NZ_PYKE01000255.1	Protein Homology	CDS	14573	15442	.	+	0	ID=cds-WP_001274690.1;Parent=gene-C9F05_RS16590;Dbxref=GenBank:WP_001274690.1;Name=WP_001274690.1;Ontology_term=GO:0005975,GO:0005524,GO:0008974;gbkey=CDS;go_function=ATP binding|0005524||IEA,phosphoribulokinase activity|0008974||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462367.1;locus_tag=C9F05_RS16590;product=phosphoribulokinase;protein_id=WP_001274690.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	15538	15942	.	-	.	ID=gene-C9F05_RS16595;Name=C9F05_RS16595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16595;old_locus_tag=C9F05_17080
NZ_PYKE01000255.1	Protein Homology	CDS	15538	15942	.	-	0	ID=cds-WP_001148919.1;Parent=gene-C9F05_RS16595;Dbxref=GenBank:WP_001148919.1;Name=WP_001148919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462368.1;locus_tag=C9F05_RS16595;product=OsmC family protein;protein_id=WP_001148919.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	16250	16882	.	+	.	ID=gene-C9F05_RS16600;Name=crp;gbkey=Gene;gene=crp;gene_biotype=protein_coding;locus_tag=C9F05_RS16600;old_locus_tag=C9F05_17085
NZ_PYKE01000255.1	Protein Homology	CDS	16250	16882	.	+	0	ID=cds-WP_000242758.1;Parent=gene-C9F05_RS16600;Dbxref=GenBank:WP_000242758.1;Name=WP_000242758.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=crp;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506431.1;locus_tag=C9F05_RS16600;product=cAMP-activated global transcriptional regulator CRP;protein_id=WP_000242758.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	16931	19018	.	+	.	ID=gene-C9F05_RS16605;Name=C9F05_RS16605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16605;old_locus_tag=C9F05_17090
NZ_PYKE01000255.1	Protein Homology	CDS	16931	19018	.	+	0	ID=cds-WP_000269311.1;Parent=gene-C9F05_RS16605;Dbxref=GenBank:WP_000269311.1;Name=WP_000269311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462370.1;locus_tag=C9F05_RS16605;product=YccS/YhfK family putative transporter;protein_id=WP_000269311.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	19061	20278	.	-	.	ID=gene-C9F05_RS16610;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;gene_synonym=dapC;locus_tag=C9F05_RS16610;old_locus_tag=C9F05_17095
NZ_PYKE01000255.1	Protein Homology	CDS	19061	20278	.	-	0	ID=cds-WP_000190023.1;Parent=gene-C9F05_RS16610;Dbxref=GenBank:WP_000190023.1;Name=WP_000190023.1;gbkey=CDS;gene=argD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462371.1;locus_tag=C9F05_RS16610;product=bifunctional acetylornithine/succinyldiaminopimelate transaminase;protein_id=WP_000190023.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	20364	20927	.	-	.	ID=gene-C9F05_RS16615;Name=pabA;gbkey=Gene;gene=pabA;gene_biotype=protein_coding;locus_tag=C9F05_RS16615;old_locus_tag=C9F05_17100
NZ_PYKE01000255.1	Protein Homology	CDS	20364	20927	.	-	0	ID=cds-WP_000601880.1;Parent=gene-C9F05_RS16615;Dbxref=GenBank:WP_000601880.1;Name=WP_000601880.1;gbkey=CDS;gene=pabA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462372.1;locus_tag=C9F05_RS16615;product=aminodeoxychorismate synthase component 2;protein_id=WP_000601880.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	20959	21561	.	-	.	ID=gene-C9F05_RS16620;Name=C9F05_RS16620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16620;old_locus_tag=C9F05_17105
NZ_PYKE01000255.1	Protein Homology	CDS	20959	21561	.	-	0	ID=cds-WP_135370477.1;Parent=gene-C9F05_RS16620;Dbxref=GenBank:WP_135370477.1;Name=WP_135370477.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462373.1;locus_tag=C9F05_RS16620;product=putative adenosine monophosphate-protein transferase Fic;protein_id=WP_135370477.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	21551	21718	.	-	.	ID=gene-C9F05_RS16625;Name=C9F05_RS16625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16625;old_locus_tag=C9F05_17110
NZ_PYKE01000255.1	Protein Homology	CDS	21551	21718	.	-	0	ID=cds-WP_001519136.1;Parent=gene-C9F05_RS16625;Dbxref=GenBank:WP_001519136.1;Name=WP_001519136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462374.1;locus_tag=C9F05_RS16625;product=YhfG family protein;protein_id=WP_001519136.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	21827	22399	.	-	.	ID=gene-C9F05_RS16630;Name=ppiA;gbkey=Gene;gene=ppiA;gene_biotype=protein_coding;gene_synonym=rotA;locus_tag=C9F05_RS16630;old_locus_tag=C9F05_17115
NZ_PYKE01000255.1	Protein Homology	CDS	21827	22399	.	-	0	ID=cds-WP_000920478.1;Parent=gene-C9F05_RS16630;Dbxref=GenBank:WP_000920478.1;Name=WP_000920478.1;gbkey=CDS;gene=ppiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462375.1;locus_tag=C9F05_RS16630;product=peptidylprolyl isomerase A;protein_id=WP_000920478.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	22676	23857	.	+	.	ID=gene-C9F05_RS16635;Name=tsgA;gbkey=Gene;gene=tsgA;gene_biotype=protein_coding;locus_tag=C9F05_RS16635;old_locus_tag=C9F05_17120
NZ_PYKE01000255.1	Protein Homology	CDS	22676	23857	.	+	0	ID=cds-WP_000185267.1;Parent=gene-C9F05_RS16635;Dbxref=GenBank:WP_000185267.1;Name=WP_000185267.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=tsgA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462376.1;locus_tag=C9F05_RS16635;product=MFS transporter TsgA;protein_id=WP_000185267.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	24119	26662	.	+	.	ID=gene-C9F05_RS16640;Name=nirB;gbkey=Gene;gene=nirB;gene_biotype=protein_coding;locus_tag=C9F05_RS16640;old_locus_tag=C9F05_17125
NZ_PYKE01000255.1	Protein Homology	CDS	24119	26662	.	+	0	ID=cds-WP_135370478.1;Parent=gene-C9F05_RS16640;Dbxref=GenBank:WP_135370478.1;Name=WP_135370478.1;gbkey=CDS;gene=nirB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462377.1;locus_tag=C9F05_RS16640;product=NADPH-nitrite reductase large subunit;protein_id=WP_135370478.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	26659	26985	.	+	.	ID=gene-C9F05_RS16645;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=C9F05_RS16645;old_locus_tag=C9F05_17130
NZ_PYKE01000255.1	Protein Homology	CDS	26659	26985	.	+	0	ID=cds-WP_000084814.1;Parent=gene-C9F05_RS16645;Dbxref=GenBank:WP_000084814.1;Name=WP_000084814.1;gbkey=CDS;gene=nirD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462378.1;locus_tag=C9F05_RS16645;product=nitrite reductase small subunit NirD;protein_id=WP_000084814.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	27167	27976	.	+	.	ID=gene-C9F05_RS16650;Name=nirC;gbkey=Gene;gene=nirC;gene_biotype=protein_coding;locus_tag=C9F05_RS16650;old_locus_tag=C9F05_17135
NZ_PYKE01000255.1	Protein Homology	CDS	27167	27976	.	+	0	ID=cds-WP_000493576.1;Parent=gene-C9F05_RS16650;Dbxref=GenBank:WP_000493576.1;Name=WP_000493576.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=nirC;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462379.1;locus_tag=C9F05_RS16650;product=nitrite transporter NirC;protein_id=WP_000493576.1;transl_table=11
NZ_PYKE01000255.1	RefSeq	gene	27988	29361	.	+	.	ID=gene-C9F05_RS16655;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=C9F05_RS16655;old_locus_tag=C9F05_17140
NZ_PYKE01000255.1	Protein Homology	CDS	27988	29361	.	+	0	ID=cds-WP_000349897.1;Parent=gene-C9F05_RS16655;Dbxref=GenBank:WP_000349897.1;Name=WP_000349897.1;Ontology_term=GO:0019354,GO:0004851,GO:0043115,GO:0051266,GO:0051287;gbkey=CDS;gene=cysG;go_function=uroporphyrin-III C-methyltransferase activity|0004851||IEA,precorrin-2 dehydrogenase activity|0043115||IEA,sirohydrochlorin ferrochelatase activity|0051266||IEA,NAD binding|0051287||IEA;go_process=siroheme biosynthetic process|0019354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462380.1;locus_tag=C9F05_RS16655;product=siroheme synthase CysG;protein_id=WP_000349897.1;transl_table=11
##sequence-region NZ_PYKE01000280.1 1 3708
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000280.1	RefSeq	region	1	3708	.	+	.	ID=NZ_PYKE01000280.1:1..3708;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000280.1	RefSeq	pseudogene	1	224	.	+	.	ID=gene-C9F05_RS18660;Name=C9F05_RS18660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS18660;old_locus_tag=C9F05_19195;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000280.1	Protein Homology	CDS	1	224	.	+	2	ID=cds-C9F05_RS18660;Parent=gene-C9F05_RS18660;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000875616.1;locus_tag=C9F05_RS18660;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000280.1	RefSeq	gene	270	593	.	-	.	ID=gene-C9F05_RS18665;Name=C9F05_RS18665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18665;old_locus_tag=C9F05_19200
NZ_PYKE01000280.1	Protein Homology	CDS	270	593	.	-	0	ID=cds-WP_135370537.1;Parent=gene-C9F05_RS18665;Dbxref=GenBank:WP_135370537.1;Name=WP_135370537.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632802.1;locus_tag=C9F05_RS18665;product=SymE family type I addiction module toxin;protein_id=WP_135370537.1;transl_table=11
NZ_PYKE01000280.1	RefSeq	pseudogene	584	3118	.	+	.	ID=gene-C9F05_RS18670;Name=C9F05_RS18670;end_range=3118,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS18670;old_locus_tag=C9F05_19205;partial=true;pseudo=true;start_range=.,584
NZ_PYKE01000280.1	Protein Homology	CDS	584	3118	.	+	0	ID=cds-C9F05_RS18670;Parent=gene-C9F05_RS18670;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3118,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000503216.1;locus_tag=C9F05_RS18670;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,584;transl_table=11
NZ_PYKE01000280.1	RefSeq	pseudogene	3453	3708	.	+	.	ID=gene-C9F05_RS18675;Name=C9F05_RS18675;end_range=3708,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS18675;old_locus_tag=C9F05_19210;partial=true;pseudo=true
NZ_PYKE01000280.1	Protein Homology	CDS	3453	3708	.	+	0	ID=cds-C9F05_RS18675;Parent=gene-C9F05_RS18675;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=3708,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000472591.1;locus_tag=C9F05_RS18675;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000200.1 1 3495
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000200.1	RefSeq	region	1	3495	.	+	.	ID=NZ_PYKE01000200.1:1..3495;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000200.1	RefSeq	pseudogene	1	530	.	+	.	ID=gene-C9F05_RS13205;Name=rfbN;gbkey=Gene;gene=rfbN;gene_biotype=pseudogene;locus_tag=C9F05_RS13205;old_locus_tag=C9F05_13580;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000200.1	Protein Homology	CDS	1	530	.	+	2	ID=cds-C9F05_RS13205;Parent=gene-C9F05_RS13205;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=rfbN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461030.1;locus_tag=C9F05_RS13205;partial=true;product=O antigen biosynthesis rhamnosyltransferase RfbN;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000200.1	RefSeq	gene	531	1970	.	+	.	ID=gene-C9F05_RS13210;Name=C9F05_RS13210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13210;old_locus_tag=C9F05_13585
NZ_PYKE01000200.1	Protein Homology	CDS	531	1970	.	+	0	ID=cds-WP_135370350.1;Parent=gene-C9F05_RS13210;Dbxref=GenBank:WP_135370350.1;Name=WP_135370350.1;Ontology_term=GO:0000271,GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461029.1;locus_tag=C9F05_RS13210;product=mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;protein_id=WP_135370350.1;transl_table=11
NZ_PYKE01000200.1	RefSeq	gene	1957	3390	.	+	.	ID=gene-C9F05_RS13215;Name=rfbK;gbkey=Gene;gene=rfbK;gene_biotype=protein_coding;locus_tag=C9F05_RS13215;old_locus_tag=C9F05_13590
NZ_PYKE01000200.1	Protein Homology	CDS	1957	3390	.	+	0	ID=cds-WP_135370351.1;Parent=gene-C9F05_RS13215;Dbxref=GenBank:WP_135370351.1;Name=WP_135370351.1;gbkey=CDS;gene=rfbK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001103634.1;locus_tag=C9F05_RS13215;product=O-antigen biosynthesis phosphomannomutase RfbK;protein_id=WP_135370351.1;transl_table=11
##sequence-region NZ_PYKE01000075.1 1 3488
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000075.1	RefSeq	region	1	3488	.	+	.	ID=NZ_PYKE01000075.1:1..3488;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000075.1	RefSeq	gene	1	3299	.	-	.	ID=gene-C9F05_RS04930;Name=C9F05_RS04930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04930;old_locus_tag=C9F05_05005;partial=true;start_range=.,1
NZ_PYKE01000075.1	Protein Homology	CDS	1	3299	.	-	0	ID=cds-WP_135370074.1;Parent=gene-C9F05_RS04930;Dbxref=GenBank:WP_135370074.1;Name=WP_135370074.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001044775.1;locus_tag=C9F05_RS04930;partial=true;product=autotransporter-associated beta strand repeat-containing protein;protein_id=WP_135370074.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000154.1 1 3475
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000154.1	RefSeq	region	1	3475	.	+	.	ID=NZ_PYKE01000154.1:1..3475;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000154.1	RefSeq	gene	46	936	.	+	.	ID=gene-C9F05_RS10900;Name=C9F05_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10900;old_locus_tag=C9F05_11185
NZ_PYKE01000154.1	Protein Homology	CDS	46	936	.	+	0	ID=cds-WP_000405927.1;Parent=gene-C9F05_RS10900;Dbxref=GenBank:WP_000405927.1;Name=WP_000405927.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001539513.1;locus_tag=C9F05_RS10900;product=LysR family transcriptional regulator;protein_id=WP_000405927.1;transl_table=11
NZ_PYKE01000154.1	RefSeq	gene	937	1920	.	-	.	ID=gene-C9F05_RS10905;Name=C9F05_RS10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10905;old_locus_tag=C9F05_11190
NZ_PYKE01000154.1	Protein Homology	CDS	937	1920	.	-	0	ID=cds-WP_000282119.1;Parent=gene-C9F05_RS10905;Dbxref=GenBank:WP_000282119.1;Name=WP_000282119.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459744.1;locus_tag=C9F05_RS10905;product=LysR family transcriptional regulator;protein_id=WP_000282119.1;transl_table=11
NZ_PYKE01000154.1	RefSeq	gene	2143	3411	.	+	.	ID=gene-C9F05_RS10910;Name=C9F05_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10910;old_locus_tag=C9F05_11195
NZ_PYKE01000154.1	Protein Homology	CDS	2143	3411	.	+	0	ID=cds-WP_000074129.1;Parent=gene-C9F05_RS10910;Dbxref=GenBank:WP_000074129.1;Name=WP_000074129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000074132.1;locus_tag=C9F05_RS10910;product=SLC13 family permease;protein_id=WP_000074129.1;transl_table=11
##sequence-region NZ_PYKE01000104.1 1 27944
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000104.1	RefSeq	region	1	27944	.	+	.	ID=NZ_PYKE01000104.1:1..27944;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000104.1	RefSeq	gene	50	1591	.	-	.	ID=gene-C9F05_RS07635;Name=C9F05_RS07635;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9F05_RS07635;old_locus_tag=C9F05_07800
NZ_PYKE01000104.1	cmsearch	rRNA	50	1591	.	-	.	ID=rna-C9F05_RS07635;Parent=gene-C9F05_RS07635;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS07635;product=16S ribosomal RNA
NZ_PYKE01000104.1	cmsearch	exon	50	1591	.	-	.	ID=exon-C9F05_RS07635-1;Parent=rna-C9F05_RS07635;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS07635;product=16S ribosomal RNA
NZ_PYKE01000104.1	RefSeq	gene	1797	1949	.	-	.	ID=gene-C9F05_RS23555;Name=C9F05_RS23555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23555
NZ_PYKE01000104.1	GeneMarkS-2+	CDS	1797	1949	.	-	0	ID=cds-WP_000795911.1;Parent=gene-C9F05_RS23555;Dbxref=GenBank:WP_000795911.1;Name=WP_000795911.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23555;product=hypothetical protein;protein_id=WP_000795911.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	2063	2617	.	+	.	ID=gene-C9F05_RS07640;Name=C9F05_RS07640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07640;old_locus_tag=C9F05_07810
NZ_PYKE01000104.1	Protein Homology	CDS	2063	2617	.	+	0	ID=cds-WP_001285635.1;Parent=gene-C9F05_RS07640;Dbxref=GenBank:WP_001285635.1;Name=WP_001285635.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462303.1;locus_tag=C9F05_RS07640;product=gamma carbonic anhydrase family protein;protein_id=WP_001285635.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	2593	2850	.	-	.	ID=gene-C9F05_RS07645;Name=C9F05_RS07645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07645;old_locus_tag=C9F05_07815
NZ_PYKE01000104.1	Protein Homology	CDS	2593	2850	.	-	0	ID=cds-WP_001070575.1;Parent=gene-C9F05_RS07645;Dbxref=GenBank:WP_001070575.1;Name=WP_001070575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462304.1;locus_tag=C9F05_RS07645;product=DUF1488 domain-containing protein;protein_id=WP_001070575.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	2847	3665	.	-	.	ID=gene-C9F05_RS07650;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=C9F05_RS07650;old_locus_tag=C9F05_07820
NZ_PYKE01000104.1	Protein Homology	CDS	2847	3665	.	-	0	ID=cds-WP_000451200.1;Parent=gene-C9F05_RS07650;Dbxref=GenBank:WP_000451200.1;Name=WP_000451200.1;Ontology_term=GO:0019632,GO:0004764;gbkey=CDS;gene=aroE;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;go_process=shikimate metabolic process|0019632||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462305.1;locus_tag=C9F05_RS07650;product=shikimate dehydrogenase;protein_id=WP_000451200.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	3670	4242	.	-	.	ID=gene-C9F05_RS07655;Name=tsaC;gbkey=Gene;gene=tsaC;gene_biotype=protein_coding;locus_tag=C9F05_RS07655;old_locus_tag=C9F05_07825
NZ_PYKE01000104.1	Protein Homology	CDS	3670	4242	.	-	0	ID=cds-WP_001063613.1;Parent=gene-C9F05_RS07655;Dbxref=GenBank:WP_001063613.1;Name=WP_001063613.1;Ontology_term=GO:0002949,GO:0003725,GO:0005524;gbkey=CDS;gene=tsaC;go_function=double-stranded RNA binding|0003725||IEA,ATP binding|0005524||IEA;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462306.1;locus_tag=C9F05_RS07655;product=L-threonylcarbamoyladenylate synthase type 1 TsaC;protein_id=WP_001063613.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	4247	4789	.	-	.	ID=gene-C9F05_RS07660;Name=C9F05_RS07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07660;old_locus_tag=C9F05_07830
NZ_PYKE01000104.1	Protein Homology	CDS	4247	4789	.	-	0	ID=cds-WP_001129708.1;Parent=gene-C9F05_RS07660;Dbxref=GenBank:WP_001129708.1;Name=WP_001129708.1;Ontology_term=GO:0006265,GO:0003677,GO:0003916,GO:0005694;gbkey=CDS;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462307.1;locus_tag=C9F05_RS07660;product=DNA topoisomerase family protein;protein_id=WP_001129708.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	4816	5289	.	-	.	ID=gene-C9F05_RS07665;Name=smg;gbkey=Gene;gene=smg;gene_biotype=protein_coding;locus_tag=C9F05_RS07665;old_locus_tag=C9F05_07835
NZ_PYKE01000104.1	Protein Homology	CDS	4816	5289	.	-	0	ID=cds-WP_000460663.1;Parent=gene-C9F05_RS07665;Dbxref=GenBank:WP_000460663.1;Name=WP_000460663.1;gbkey=CDS;gene=smg;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134083.1;locus_tag=C9F05_RS07665;product=DUF494 family protein Smg;protein_id=WP_000460663.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	5261	6385	.	-	.	ID=gene-C9F05_RS07670;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=protein_coding;locus_tag=C9F05_RS07670;old_locus_tag=C9F05_07840
NZ_PYKE01000104.1	Protein Homology	CDS	5261	6385	.	-	0	ID=cds-WP_079827318.1;Parent=gene-C9F05_RS07670;Dbxref=GenBank:WP_079827318.1;Name=WP_079827318.1;Ontology_term=GO:0009294;gbkey=CDS;gene=dprA;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462309.1;locus_tag=C9F05_RS07670;product=DNA-protecting protein DprA;protein_id=WP_079827318.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	6517	7026	.	+	.	ID=gene-C9F05_RS07675;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=C9F05_RS07675;old_locus_tag=C9F05_07845
NZ_PYKE01000104.1	Protein Homology	CDS	6517	7026	.	+	0	ID=cds-WP_000114987.1;Parent=gene-C9F05_RS07675;Dbxref=GenBank:WP_000114987.1;Name=WP_000114987.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462310.1;locus_tag=C9F05_RS07675;product=peptide deformylase;protein_id=WP_000114987.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	7042	7989	.	+	.	ID=gene-C9F05_RS07680;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=C9F05_RS07680;old_locus_tag=C9F05_07850
NZ_PYKE01000104.1	Protein Homology	CDS	7042	7989	.	+	0	ID=cds-WP_001285171.1;Parent=gene-C9F05_RS07680;Dbxref=GenBank:WP_001285171.1;Name=WP_001285171.1;Ontology_term=GO:0071951,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=conversion of methionyl-tRNA to N-formyl-methionyl-tRNA|0071951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462311.1;locus_tag=C9F05_RS07680;product=methionyl-tRNA formyltransferase;protein_id=WP_001285171.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	8041	9330	.	+	.	ID=gene-C9F05_RS07685;Name=rsmB;gbkey=Gene;gene=rsmB;gene_biotype=protein_coding;locus_tag=C9F05_RS07685;old_locus_tag=C9F05_07855
NZ_PYKE01000104.1	Protein Homology	CDS	8041	9330	.	+	0	ID=cds-WP_135370164.1;Parent=gene-C9F05_RS07685;Dbxref=GenBank:WP_135370164.1;Name=WP_135370164.1;Ontology_term=GO:0001510,GO:0006355,GO:0006364,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmB;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA,regulation of DNA-templated transcription|0006355||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462312.1;locus_tag=C9F05_RS07685;product=16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;protein_id=WP_135370164.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	9352	10728	.	+	.	ID=gene-C9F05_RS07690;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;locus_tag=C9F05_RS07690;old_locus_tag=C9F05_07860
NZ_PYKE01000104.1	Protein Homology	CDS	9352	10728	.	+	0	ID=cds-WP_000691374.1;Parent=gene-C9F05_RS07690;Dbxref=GenBank:WP_000691374.1;Name=WP_000691374.1;Ontology_term=GO:0006813,GO:0015079,GO:0016020;gbkey=CDS;gene=trkA;go_component=membrane|0016020||IEA;go_function=potassium ion transmembrane transporter activity|0015079||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004125888.1;locus_tag=C9F05_RS07690;product=Trk system potassium transporter TrkA;protein_id=WP_000691374.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	10870	11283	.	+	.	ID=gene-C9F05_RS07695;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=C9F05_RS07695;old_locus_tag=C9F05_07865
NZ_PYKE01000104.1	Protein Homology	CDS	10870	11283	.	+	0	ID=cds-WP_000008119.1;Parent=gene-C9F05_RS07695;Dbxref=GenBank:WP_000008119.1;Name=WP_000008119.1;gbkey=CDS;gene=mscL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462314.1;locus_tag=C9F05_RS07695;product=large-conductance mechanosensitive channel protein MscL;protein_id=WP_000008119.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	pseudogene	11285	11488	.	-	.	ID=gene-C9F05_RS07700;Name=C9F05_RS07700;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS07700;old_locus_tag=C9F05_07870;partial=true;pseudo=true;start_range=.,11285
NZ_PYKE01000104.1	Protein Homology	CDS	11285	11488	.	-	0	ID=cds-C9F05_RS07700;Parent=gene-C9F05_RS07700;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588467.1;locus_tag=C9F05_RS07700;partial=true;product=alternative ribosome-rescue factor A;pseudo=true;start_range=.,11285;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	11546	11971	.	-	.	ID=gene-C9F05_RS07705;Name=zntR;gbkey=Gene;gene=zntR;gene_biotype=protein_coding;locus_tag=C9F05_RS07705;old_locus_tag=C9F05_07875
NZ_PYKE01000104.1	Protein Homology	CDS	11546	11971	.	-	0	ID=cds-WP_000285588.1;Parent=gene-C9F05_RS07705;Dbxref=GenBank:WP_000285588.1;Name=WP_000285588.1;Ontology_term=GO:0006355,GO:0003677,GO:0008270;gbkey=CDS;gene=zntR;go_function=DNA binding|0003677||IEA,zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462316.1;locus_tag=C9F05_RS07705;product=Zn(2+)-responsive transcriptional regulator;protein_id=WP_000285588.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	11982	12350	.	-	.	ID=gene-C9F05_RS07710;Name=C9F05_RS07710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07710;old_locus_tag=C9F05_07880
NZ_PYKE01000104.1	Protein Homology	CDS	11982	12350	.	-	0	ID=cds-WP_085403114.1;Parent=gene-C9F05_RS07710;Dbxref=GenBank:WP_085403114.1;Name=WP_085403114.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462317.1;locus_tag=C9F05_RS07710;product=DUF1992 domain-containing protein;protein_id=WP_085403114.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	12458	12841	.	-	.	ID=gene-C9F05_RS07715;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=C9F05_RS07715;old_locus_tag=C9F05_07885
NZ_PYKE01000104.1	Protein Homology	CDS	12458	12841	.	-	0	ID=cds-WP_001216370.1;Parent=gene-C9F05_RS07715;Dbxref=GenBank:WP_001216370.1;Name=WP_001216370.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462318.1;locus_tag=C9F05_RS07715;product=50S ribosomal protein L17;protein_id=WP_001216370.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	12882	13871	.	-	.	ID=gene-C9F05_RS07720;Name=C9F05_RS07720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07720;old_locus_tag=C9F05_07890
NZ_PYKE01000104.1	Protein Homology	CDS	12882	13871	.	-	0	ID=cds-WP_001162094.1;Parent=gene-C9F05_RS07720;Dbxref=GenBank:WP_001162094.1;Name=WP_001162094.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005970247.1;locus_tag=C9F05_RS07720;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_001162094.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	13897	14517	.	-	.	ID=gene-C9F05_RS07725;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=C9F05_RS07725;old_locus_tag=C9F05_07895
NZ_PYKE01000104.1	Protein Homology	CDS	13897	14517	.	-	0	ID=cds-WP_000135226.1;Parent=gene-C9F05_RS07725;Dbxref=GenBank:WP_000135226.1;Name=WP_000135226.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004410410.1;locus_tag=C9F05_RS07725;product=30S ribosomal protein S4;protein_id=WP_000135226.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	14551	14940	.	-	.	ID=gene-C9F05_RS07730;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=C9F05_RS07730;old_locus_tag=C9F05_07900
NZ_PYKE01000104.1	Protein Homology	CDS	14551	14940	.	-	0	ID=cds-WP_001029758.1;Parent=gene-C9F05_RS07730;Dbxref=GenBank:WP_001029758.1;Name=WP_001029758.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001029758.1;locus_tag=C9F05_RS07730;product=30S ribosomal protein S11;protein_id=WP_001029758.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	14957	15313	.	-	.	ID=gene-C9F05_RS07735;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=C9F05_RS07735;old_locus_tag=C9F05_07905
NZ_PYKE01000104.1	Protein Homology	CDS	14957	15313	.	-	0	ID=cds-WP_000090780.1;Parent=gene-C9F05_RS07735;Dbxref=GenBank:WP_000090780.1;Name=WP_000090780.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsM;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019935869.1;locus_tag=C9F05_RS07735;product=30S ribosomal protein S13;protein_id=WP_000090780.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	15460	15576	.	-	.	ID=gene-C9F05_RS07740;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=C9F05_RS07740;old_locus_tag=C9F05_07910
NZ_PYKE01000104.1	Protein Homology	CDS	15460	15576	.	-	0	ID=cds-WP_000868187.1;Parent=gene-C9F05_RS07740;Dbxref=GenBank:WP_000868187.1;Name=WP_000868187.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmJ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020322760.1;locus_tag=C9F05_RS07740;product=50S ribosomal protein L36;protein_id=WP_000868187.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	15608	16939	.	-	.	ID=gene-C9F05_RS07745;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=C9F05_RS07745;old_locus_tag=C9F05_07915
NZ_PYKE01000104.1	Protein Homology	CDS	15608	16939	.	-	0	ID=cds-WP_001118864.1;Parent=gene-C9F05_RS07745;Dbxref=GenBank:WP_001118864.1;Name=WP_001118864.1;Ontology_term=GO:0015031,GO:0043952,GO:0016020;gbkey=CDS;gene=secY;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004868351.1;locus_tag=C9F05_RS07745;product=preprotein translocase subunit SecY;protein_id=WP_001118864.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	16947	17381	.	-	.	ID=gene-C9F05_RS07750;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=C9F05_RS07750;old_locus_tag=C9F05_07920
NZ_PYKE01000104.1	Protein Homology	CDS	16947	17381	.	-	0	ID=cds-WP_001238917.1;Parent=gene-C9F05_RS07750;Dbxref=GenBank:WP_001238917.1;Name=WP_001238917.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplO;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011095501.1;locus_tag=C9F05_RS07750;product=50S ribosomal protein L15;protein_id=WP_001238917.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	17385	17564	.	-	.	ID=gene-C9F05_RS07755;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=C9F05_RS07755;old_locus_tag=C9F05_07925
NZ_PYKE01000104.1	Protein Homology	CDS	17385	17564	.	-	0	ID=cds-WP_001140434.1;Parent=gene-C9F05_RS07755;Dbxref=GenBank:WP_001140434.1;Name=WP_001140434.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmD;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012147215.1;locus_tag=C9F05_RS07755;product=50S ribosomal protein L30;protein_id=WP_001140434.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	17568	18071	.	-	.	ID=gene-C9F05_RS07760;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=C9F05_RS07760;old_locus_tag=C9F05_07930
NZ_PYKE01000104.1	Protein Homology	CDS	17568	18071	.	-	0	ID=cds-WP_000940121.1;Parent=gene-C9F05_RS07760;Dbxref=GenBank:WP_000940121.1;Name=WP_000940121.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsE;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004106339.1;locus_tag=C9F05_RS07760;product=30S ribosomal protein S5;protein_id=WP_000940121.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	18086	18439	.	-	.	ID=gene-C9F05_RS07765;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=C9F05_RS07765;old_locus_tag=C9F05_07935
NZ_PYKE01000104.1	Protein Homology	CDS	18086	18439	.	-	0	ID=cds-WP_000358956.1;Parent=gene-C9F05_RS07765;Dbxref=GenBank:WP_000358956.1;Name=WP_000358956.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplR;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005970258.1;locus_tag=C9F05_RS07765;product=50S ribosomal protein L18;protein_id=WP_000358956.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	18449	18982	.	-	.	ID=gene-C9F05_RS07770;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=C9F05_RS07770;old_locus_tag=C9F05_07940
NZ_PYKE01000104.1	Protein Homology	CDS	18449	18982	.	-	0	ID=cds-WP_000091939.1;Parent=gene-C9F05_RS07770;Dbxref=GenBank:WP_000091939.1;Name=WP_000091939.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplF;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003031129.1;locus_tag=C9F05_RS07770;product=50S ribosomal protein L6;protein_id=WP_000091939.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	18995	19387	.	-	.	ID=gene-C9F05_RS07775;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=C9F05_RS07775;old_locus_tag=C9F05_07945
NZ_PYKE01000104.1	Protein Homology	CDS	18995	19387	.	-	0	ID=cds-WP_000062611.1;Parent=gene-C9F05_RS07775;Dbxref=GenBank:WP_000062611.1;Name=WP_000062611.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011148781.1;locus_tag=C9F05_RS07775;product=30S ribosomal protein S8;protein_id=WP_000062611.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	19421	19726	.	-	.	ID=gene-C9F05_RS07780;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=C9F05_RS07780;old_locus_tag=C9F05_07950
NZ_PYKE01000104.1	Protein Homology	CDS	19421	19726	.	-	0	ID=cds-WP_001118932.1;Parent=gene-C9F05_RS07780;Dbxref=GenBank:WP_001118932.1;Name=WP_001118932.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005599304.1;locus_tag=C9F05_RS07780;product=30S ribosomal protein S14;protein_id=WP_001118932.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	19741	20280	.	-	.	ID=gene-C9F05_RS07785;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=C9F05_RS07785;old_locus_tag=C9F05_07955
NZ_PYKE01000104.1	Protein Homology	CDS	19741	20280	.	-	0	ID=cds-WP_001096206.1;Parent=gene-C9F05_RS07785;Dbxref=GenBank:WP_001096206.1;Name=WP_001096206.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001096198.1;locus_tag=C9F05_RS07785;product=50S ribosomal protein L5;protein_id=WP_001096206.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	20295	20609	.	-	.	ID=gene-C9F05_RS07790;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=C9F05_RS07790;old_locus_tag=C9F05_07960
NZ_PYKE01000104.1	Protein Homology	CDS	20295	20609	.	-	0	ID=cds-WP_000729185.1;Parent=gene-C9F05_RS07790;Dbxref=GenBank:WP_000729185.1;Name=WP_000729185.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplX;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000729185.1;locus_tag=C9F05_RS07790;product=50S ribosomal protein L24;protein_id=WP_000729185.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	20620	20991	.	-	.	ID=gene-C9F05_RS07795;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=C9F05_RS07795;old_locus_tag=C9F05_07965
NZ_PYKE01000104.1	Protein Homology	CDS	20620	20991	.	-	0	ID=cds-WP_000613954.1;Parent=gene-C9F05_RS07795;Dbxref=GenBank:WP_000613954.1;Name=WP_000613954.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplN;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1;locus_tag=C9F05_RS07795;product=50S ribosomal protein L14;protein_id=WP_000613954.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	21155	21409	.	-	.	ID=gene-C9F05_RS07800;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=C9F05_RS07800;old_locus_tag=C9F05_07970
NZ_PYKE01000104.1	Protein Homology	CDS	21155	21409	.	-	0	ID=cds-WP_000130101.1;Parent=gene-C9F05_RS07800;Dbxref=GenBank:WP_000130101.1;Name=WP_000130101.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006817275.1;locus_tag=C9F05_RS07800;product=30S ribosomal protein S17;protein_id=WP_000130101.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	21409	21600	.	-	.	ID=gene-C9F05_RS07805;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=C9F05_RS07805;old_locus_tag=C9F05_07975
NZ_PYKE01000104.1	Protein Homology	CDS	21409	21600	.	-	0	ID=cds-WP_000644742.1;Parent=gene-C9F05_RS07805;Dbxref=GenBank:WP_000644742.1;Name=WP_000644742.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000644743.1;locus_tag=C9F05_RS07805;product=50S ribosomal protein L29;protein_id=WP_000644742.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	21600	22010	.	-	.	ID=gene-C9F05_RS07810;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=C9F05_RS07810;old_locus_tag=C9F05_07980
NZ_PYKE01000104.1	Protein Homology	CDS	21600	22010	.	-	0	ID=cds-WP_000941208.1;Parent=gene-C9F05_RS07810;Dbxref=GenBank:WP_000941208.1;Name=WP_000941208.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843;gbkey=CDS;gene=rplP;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017805229.1;locus_tag=C9F05_RS07810;product=50S ribosomal protein L16;protein_id=WP_000941208.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	22023	22724	.	-	.	ID=gene-C9F05_RS07815;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=C9F05_RS07815;old_locus_tag=C9F05_07985
NZ_PYKE01000104.1	Protein Homology	CDS	22023	22724	.	-	0	ID=cds-WP_000529945.1;Parent=gene-C9F05_RS07815;Dbxref=GenBank:WP_000529945.1;Name=WP_000529945.1;Ontology_term=GO:0006412,GO:0003735;gbkey=CDS;gene=rpsC;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742302.1;locus_tag=C9F05_RS07815;product=30S ribosomal protein S3;protein_id=WP_000529945.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	22742	23074	.	-	.	ID=gene-C9F05_RS07820;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=C9F05_RS07820;old_locus_tag=C9F05_07990
NZ_PYKE01000104.1	Protein Homology	CDS	22742	23074	.	-	0	ID=cds-WP_000448832.1;Parent=gene-C9F05_RS07820;Dbxref=GenBank:WP_000448832.1;Name=WP_000448832.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplV;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000447526.1;locus_tag=C9F05_RS07820;product=50S ribosomal protein L22;protein_id=WP_000448832.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	23089	23367	.	-	.	ID=gene-C9F05_RS07825;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=C9F05_RS07825;old_locus_tag=C9F05_07995
NZ_PYKE01000104.1	Protein Homology	CDS	23089	23367	.	-	0	ID=cds-WP_001138115.1;Parent=gene-C9F05_RS07825;Dbxref=GenBank:WP_001138115.1;Name=WP_001138115.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsS;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1;locus_tag=C9F05_RS07825;product=30S ribosomal protein S19;protein_id=WP_001138115.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	23384	24205	.	-	.	ID=gene-C9F05_RS07830;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=C9F05_RS07830;old_locus_tag=C9F05_08000
NZ_PYKE01000104.1	Protein Homology	CDS	23384	24205	.	-	0	ID=cds-WP_000301869.1;Parent=gene-C9F05_RS07830;Dbxref=GenBank:WP_000301869.1;Name=WP_000301869.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0016740,GO:0015934;gbkey=CDS;gene=rplB;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA,transferase activity|0016740||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001738551.1;locus_tag=C9F05_RS07830;product=50S ribosomal protein L2;protein_id=WP_000301869.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	24223	24525	.	-	.	ID=gene-C9F05_RS07835;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=C9F05_RS07835;old_locus_tag=C9F05_08005
NZ_PYKE01000104.1	Protein Homology	CDS	24223	24525	.	-	0	ID=cds-WP_000617546.1;Parent=gene-C9F05_RS07835;Dbxref=GenBank:WP_000617546.1;Name=WP_000617546.1;gbkey=CDS;gene=rplW;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007891652.1;locus_tag=C9F05_RS07835;product=50S ribosomal protein L23;protein_id=WP_000617546.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	24522	25127	.	-	.	ID=gene-C9F05_RS07840;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=C9F05_RS07840;old_locus_tag=C9F05_08010
NZ_PYKE01000104.1	Protein Homology	CDS	24522	25127	.	-	0	ID=cds-WP_000424395.1;Parent=gene-C9F05_RS07840;Dbxref=GenBank:WP_000424395.1;Name=WP_000424395.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010304939.1;locus_tag=C9F05_RS07840;product=50S ribosomal protein L4;protein_id=WP_000424395.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	25138	25767	.	-	.	ID=gene-C9F05_RS07845;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=C9F05_RS07845;old_locus_tag=C9F05_08015
NZ_PYKE01000104.1	Protein Homology	CDS	25138	25767	.	-	0	ID=cds-WP_000579838.1;Parent=gene-C9F05_RS07845;Dbxref=GenBank:WP_000579838.1;Name=WP_000579838.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000579825.1;locus_tag=C9F05_RS07845;product=50S ribosomal protein L3;protein_id=WP_000579838.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	25800	26111	.	-	.	ID=gene-C9F05_RS07850;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=C9F05_RS07850;old_locus_tag=C9F05_08020
NZ_PYKE01000104.1	Protein Homology	CDS	25800	26111	.	-	0	ID=cds-WP_001181005.1;Parent=gene-C9F05_RS07850;Dbxref=GenBank:WP_001181005.1;Name=WP_001181005.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014268624.1;locus_tag=C9F05_RS07850;product=30S ribosomal protein S10;protein_id=WP_001181005.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	26491	26958	.	+	.	ID=gene-C9F05_RS07855;Name=hopD;gbkey=Gene;gene=hopD;gene_biotype=protein_coding;locus_tag=C9F05_RS07855;old_locus_tag=C9F05_08030
NZ_PYKE01000104.1	Protein Homology	CDS	26491	26958	.	+	0	ID=cds-WP_023232599.1;Parent=gene-C9F05_RS07855;Dbxref=GenBank:WP_023232599.1;Name=WP_023232599.1;gbkey=CDS;gene=hopD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462346.1;locus_tag=C9F05_RS07855;product=prepilin peptidase;protein_id=WP_023232599.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	26955	27431	.	-	.	ID=gene-C9F05_RS07860;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=C9F05_RS07860;old_locus_tag=C9F05_08035
NZ_PYKE01000104.1	Protein Homology	CDS	26955	27431	.	-	0	ID=cds-WP_000675530.1;Parent=gene-C9F05_RS07860;Dbxref=GenBank:WP_000675530.1;Name=WP_000675530.1;Ontology_term=GO:0006879,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular iron ion homeostasis|0006879||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462347.1;locus_tag=C9F05_RS07860;product=bacterioferritin;protein_id=WP_000675530.1;transl_table=11
NZ_PYKE01000104.1	RefSeq	gene	27504	27698	.	-	.	ID=gene-C9F05_RS07865;Name=bfd;gbkey=Gene;gene=bfd;gene_biotype=protein_coding;locus_tag=C9F05_RS07865;old_locus_tag=C9F05_08040
NZ_PYKE01000104.1	Protein Homology	CDS	27504	27698	.	-	0	ID=cds-WP_000289081.1;Parent=gene-C9F05_RS07865;Dbxref=GenBank:WP_000289081.1;Name=WP_000289081.1;gbkey=CDS;gene=bfd;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462348.1;locus_tag=C9F05_RS07865;product=bacterioferritin-associated ferredoxin;protein_id=WP_000289081.1;transl_table=11
##sequence-region NZ_PYKE01000017.1 1 3415
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000017.1	RefSeq	region	1	3415	.	+	.	ID=NZ_PYKE01000017.1:1..3415;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000017.1	RefSeq	gene	161	1231	.	+	.	ID=gene-C9F05_RS00790;Name=rfaQ;gbkey=Gene;gene=rfaQ;gene_biotype=protein_coding;locus_tag=C9F05_RS00790;old_locus_tag=C9F05_00800
NZ_PYKE01000017.1	Protein Homology	CDS	161	1231	.	+	0	ID=cds-WP_001526672.1;Parent=gene-C9F05_RS00790;Dbxref=GenBank:WP_001526672.1;Name=WP_001526672.1;Ontology_term=GO:0016757;gbkey=CDS;gene=rfaQ;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521713.1;locus_tag=C9F05_RS00790;product=lipopolysaccharide core heptosyltransferase RfaQ;protein_id=WP_001526672.1;transl_table=11
NZ_PYKE01000017.1	RefSeq	gene	1228	2352	.	+	.	ID=gene-C9F05_RS00795;Name=C9F05_RS00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00795;old_locus_tag=C9F05_00805
NZ_PYKE01000017.1	Protein Homology	CDS	1228	2352	.	+	0	ID=cds-WP_001261577.1;Parent=gene-C9F05_RS00795;Dbxref=GenBank:WP_001261577.1;Name=WP_001261577.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462622.1;locus_tag=C9F05_RS00795;product=glycosyltransferase family 4 protein;protein_id=WP_001261577.1;transl_table=11
NZ_PYKE01000017.1	RefSeq	gene	2345	3142	.	+	.	ID=gene-C9F05_RS00800;Name=rfaP;gbkey=Gene;gene=rfaP;gene_biotype=protein_coding;locus_tag=C9F05_RS00800;old_locus_tag=C9F05_00810
NZ_PYKE01000017.1	Protein Homology	CDS	2345	3142	.	+	0	ID=cds-WP_135369936.1;Parent=gene-C9F05_RS00800;Dbxref=GenBank:WP_135369936.1;Name=WP_135369936.1;Ontology_term=GO:0009103,GO:0016301;gbkey=CDS;gene=rfaP;go_function=kinase activity|0016301||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462621.1;locus_tag=C9F05_RS00800;product=lipopolysaccharide core heptose(I) kinase RfaP;protein_id=WP_135369936.1;transl_table=11
NZ_PYKE01000017.1	RefSeq	gene	3198	3407	.	+	.	ID=gene-C9F05_RS00805;Name=C9F05_RS00805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00805;old_locus_tag=C9F05_00815
NZ_PYKE01000017.1	GeneMarkS-2+	CDS	3198	3407	.	+	0	ID=cds-WP_000065393.1;Parent=gene-C9F05_RS00805;Dbxref=GenBank:WP_000065393.1;Name=WP_000065393.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS00805;product=hypothetical protein;protein_id=WP_000065393.1;transl_table=11
##sequence-region NZ_PYKE01000283.1 1 27068
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000283.1	RefSeq	region	1	27068	.	+	.	ID=NZ_PYKE01000283.1:1..27068;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000283.1	RefSeq	pseudogene	92	292	.	+	.	ID=gene-C9F05_RS18725;Name=C9F05_RS18725;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS18725;old_locus_tag=C9F05_19260;pseudo=true
NZ_PYKE01000283.1	Protein Homology	CDS	92	292	.	+	0	ID=cds-C9F05_RS18725;Parent=gene-C9F05_RS18725;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460822.1;locus_tag=C9F05_RS18725;product=PagK family vesicle-borne virulence factor;pseudo=true;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	389	973	.	-	.	ID=gene-C9F05_RS18730;Name=C9F05_RS18730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18730;old_locus_tag=C9F05_19265
NZ_PYKE01000283.1	Protein Homology	CDS	389	973	.	-	0	ID=cds-WP_050067674.1;Parent=gene-C9F05_RS18730;Dbxref=GenBank:WP_050067674.1;Name=WP_050067674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461522.1;locus_tag=C9F05_RS18730;product=tail fiber assembly protein;protein_id=WP_050067674.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	pseudogene	973	3050	.	-	.	ID=gene-C9F05_RS18735;Name=C9F05_RS18735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS18735;old_locus_tag=C9F05_19270;pseudo=true
NZ_PYKE01000283.1	Protein Homology	CDS	973	3050	.	-	0	ID=cds-C9F05_RS18735;Parent=gene-C9F05_RS18735;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460024.1;locus_tag=C9F05_RS18735;product=phage tail protein;pseudo=true;transl_table=11
NZ_PYKE01000283.1	RefSeq	pseudogene	3013	3108	.	+	.	ID=gene-C9F05_RS23895;Name=C9F05_RS23895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23895;partial=true;pseudo=true;start_range=.,3013
NZ_PYKE01000283.1	Protein Homology	CDS	3013	3108	.	+	0	ID=cds-C9F05_RS23895;Parent=gene-C9F05_RS23895;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460860.1;locus_tag=C9F05_RS23895;partial=true;product=DUF72 domain-containing protein;pseudo=true;start_range=.,3013;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	3161	3556	.	+	.	ID=gene-C9F05_RS18740;Name=C9F05_RS18740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18740;old_locus_tag=C9F05_19275
NZ_PYKE01000283.1	Protein Homology	CDS	3161	3556	.	+	0	ID=cds-WP_000252975.1;Parent=gene-C9F05_RS18740;Dbxref=GenBank:WP_000252975.1;Name=WP_000252975.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460861.1;locus_tag=C9F05_RS18740;product=MAPEG family protein;protein_id=WP_000252975.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	3597	4340	.	+	.	ID=gene-C9F05_RS18745;Name=cmoA;gbkey=Gene;gene=cmoA;gene_biotype=protein_coding;locus_tag=C9F05_RS18745;old_locus_tag=C9F05_19280
NZ_PYKE01000283.1	Protein Homology	CDS	3597	4340	.	+	0	ID=cds-WP_000019609.1;Parent=gene-C9F05_RS18745;Dbxref=GenBank:WP_000019609.1;Name=WP_000019609.1;gbkey=CDS;gene=cmoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460862.1;locus_tag=C9F05_RS18745;product=carboxy-S-adenosyl-L-methionine synthase CmoA;protein_id=WP_000019609.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	4337	5308	.	+	.	ID=gene-C9F05_RS18750;Name=cmoB;gbkey=Gene;gene=cmoB;gene_biotype=protein_coding;locus_tag=C9F05_RS18750;old_locus_tag=C9F05_19285
NZ_PYKE01000283.1	Protein Homology	CDS	4337	5308	.	+	0	ID=cds-WP_001648733.1;Parent=gene-C9F05_RS18750;Dbxref=GenBank:WP_001648733.1;Name=WP_001648733.1;Ontology_term=GO:0002098,GO:0016765;gbkey=CDS;gene=cmoB;go_function=transferase activity%2C transferring alkyl or aryl (other than methyl) groups|0016765||IEA;go_process=tRNA wobble uridine modification|0002098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460863.1;locus_tag=C9F05_RS18750;product=tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB;protein_id=WP_001648733.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	5544	6290	.	-	.	ID=gene-C9F05_RS18755;Name=cutC;gbkey=Gene;gene=cutC;gene_biotype=protein_coding;locus_tag=C9F05_RS18755;old_locus_tag=C9F05_19295
NZ_PYKE01000283.1	Protein Homology	CDS	5544	6290	.	-	0	ID=cds-WP_001185779.1;Parent=gene-C9F05_RS18755;Dbxref=GenBank:WP_001185779.1;Name=WP_001185779.1;Ontology_term=GO:0055070,GO:0005507;gbkey=CDS;gene=cutC;go_function=copper ion binding|0005507||IEA;go_process=copper ion homeostasis|0055070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460864.1;locus_tag=C9F05_RS18755;product=copper homeostasis protein CutC;protein_id=WP_001185779.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	6310	6879	.	-	.	ID=gene-C9F05_RS18760;Name=C9F05_RS18760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18760;old_locus_tag=C9F05_19300
NZ_PYKE01000283.1	Protein Homology	CDS	6310	6879	.	-	0	ID=cds-WP_080151241.1;Parent=gene-C9F05_RS18760;Dbxref=GenBank:WP_080151241.1;Name=WP_080151241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460865.1;locus_tag=C9F05_RS18760;product=VOC family protein;protein_id=WP_080151241.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	7116	8849	.	+	.	ID=gene-C9F05_RS18765;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=C9F05_RS18765;old_locus_tag=C9F05_19305
NZ_PYKE01000283.1	Protein Homology	CDS	7116	8849	.	+	0	ID=cds-WP_001025360.1;Parent=gene-C9F05_RS18765;Dbxref=GenBank:WP_001025360.1;Name=WP_001025360.1;Ontology_term=GO:0006420,GO:0004814,GO:0005524,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA,ATP binding|0005524||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001025321.1;locus_tag=C9F05_RS18765;product=arginine--tRNA ligase;protein_id=WP_001025360.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	9038	10909	.	+	.	ID=gene-C9F05_RS18770;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=C9F05_RS18770;old_locus_tag=C9F05_19310
NZ_PYKE01000283.1	Protein Homology	CDS	9038	10909	.	+	0	ID=cds-WP_135370541.1;Parent=gene-C9F05_RS18770;Dbxref=GenBank:WP_135370541.1;Name=WP_135370541.1;Ontology_term=GO:0009252,GO:0003824,GO:0008658,GO:0016020;gbkey=CDS;gene=mrdA;go_component=membrane|0016020||IEA;go_function=catalytic activity|0003824||IEA,penicillin binding|0008658||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460867.1;locus_tag=C9F05_RS18770;product=penicillin-binding protein 2;protein_id=WP_135370541.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	10963	12102	.	-	.	ID=gene-C9F05_RS18775;Name=bglB;gbkey=Gene;gene=bglB;gene_biotype=protein_coding;locus_tag=C9F05_RS18775;old_locus_tag=C9F05_19315
NZ_PYKE01000283.1	Protein Homology	CDS	10963	12102	.	-	0	ID=cds-WP_000989909.1;Parent=gene-C9F05_RS18775;Dbxref=GenBank:WP_000989909.1;Name=WP_000989909.1;Ontology_term=GO:0009313,GO:0004556;gbkey=CDS;gene=bglB;go_function=alpha-amylase activity|0004556||IEA;go_process=oligosaccharide catabolic process|0009313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460868.1;locus_tag=C9F05_RS18775;product=beta-galactosidase BglB;protein_id=WP_000989909.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	12339	12731	.	-	.	ID=gene-C9F05_RS18780;Name=flhE;gbkey=Gene;gene=flhE;gene_biotype=protein_coding;locus_tag=C9F05_RS18780;old_locus_tag=C9F05_19320
NZ_PYKE01000283.1	Protein Homology	CDS	12339	12731	.	-	0	ID=cds-WP_001233619.1;Parent=gene-C9F05_RS18780;Dbxref=GenBank:WP_001233619.1;Name=WP_001233619.1;Ontology_term=GO:0044781;gbkey=CDS;gene=flhE;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460869.1;locus_tag=C9F05_RS18780;product=flagellar protein FlhE;protein_id=WP_001233619.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	12731	14809	.	-	.	ID=gene-C9F05_RS18785;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=C9F05_RS18785;old_locus_tag=C9F05_19325
NZ_PYKE01000283.1	Protein Homology	CDS	12731	14809	.	-	0	ID=cds-WP_117218672.1;Parent=gene-C9F05_RS18785;Dbxref=GenBank:WP_117218672.1;Name=WP_117218672.1;Ontology_term=GO:0044780,GO:0016020;gbkey=CDS;gene=flhA;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460870.1;locus_tag=C9F05_RS18785;product=flagellar biosynthesis protein FlhA;protein_id=WP_117218672.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	14802	15953	.	-	.	ID=gene-C9F05_RS18790;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=C9F05_RS18790;old_locus_tag=C9F05_19330
NZ_PYKE01000283.1	Protein Homology	CDS	14802	15953	.	-	0	ID=cds-WP_135370542.1;Parent=gene-C9F05_RS18790;Dbxref=GenBank:WP_135370542.1;Name=WP_135370542.1;Ontology_term=GO:0015031,GO:0044780,GO:0016020;gbkey=CDS;gene=flhB;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460871.1;locus_tag=C9F05_RS18790;product=flagellar biosynthesis protein FlhB;protein_id=WP_135370542.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	16147	16791	.	-	.	ID=gene-C9F05_RS18795;Name=cheZ;gbkey=Gene;gene=cheZ;gene_biotype=protein_coding;locus_tag=C9F05_RS18795;old_locus_tag=C9F05_19335
NZ_PYKE01000283.1	Protein Homology	CDS	16147	16791	.	-	0	ID=cds-WP_000983586.1;Parent=gene-C9F05_RS18795;Dbxref=GenBank:WP_000983586.1;Name=WP_000983586.1;Ontology_term=GO:0050920,GO:0003824;gbkey=CDS;gene=cheZ;go_function=catalytic activity|0003824||IEA;go_process=regulation of chemotaxis|0050920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460872.1;locus_tag=C9F05_RS18795;product=protein phosphatase CheZ;protein_id=WP_000983586.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	16802	17191	.	-	.	ID=gene-C9F05_RS18800;Name=cheY;gbkey=Gene;gene=cheY;gene_biotype=protein_coding;locus_tag=C9F05_RS18800;old_locus_tag=C9F05_19340
NZ_PYKE01000283.1	Protein Homology	CDS	16802	17191	.	-	0	ID=cds-WP_000763861.1;Parent=gene-C9F05_RS18800;Dbxref=GenBank:WP_000763861.1;Name=WP_000763861.1;Ontology_term=GO:0000160;gbkey=CDS;gene=cheY;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002210873.1;locus_tag=C9F05_RS18800;product=chemotaxis response regulator CheY;protein_id=WP_000763861.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	17209	18258	.	-	.	ID=gene-C9F05_RS18805;Name=cheB;gbkey=Gene;gene=cheB;gene_biotype=protein_coding;locus_tag=C9F05_RS18805;old_locus_tag=C9F05_19345
NZ_PYKE01000283.1	Protein Homology	CDS	17209	18258	.	-	0	ID=cds-WP_000036392.1;Parent=gene-C9F05_RS18805;Dbxref=GenBank:WP_000036392.1;Name=WP_000036392.1;gbkey=CDS;gene=cheB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000036372.1;locus_tag=C9F05_RS18805;product=protein-glutamate methylesterase/protein glutamine deamidase;protein_id=WP_000036392.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	18255	19121	.	-	.	ID=gene-C9F05_RS18810;Name=cheR;gbkey=Gene;gene=cheR;gene_biotype=protein_coding;locus_tag=C9F05_RS18810;old_locus_tag=C9F05_19350
NZ_PYKE01000283.1	Protein Homology	CDS	18255	19121	.	-	0	ID=cds-WP_000204362.1;Parent=gene-C9F05_RS18810;Dbxref=GenBank:WP_000204362.1;Name=WP_000204362.1;Ontology_term=GO:0008757;gbkey=CDS;gene=cheR;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460875.1;locus_tag=C9F05_RS18810;product=protein-glutamate O-methyltransferase CheR;protein_id=WP_000204362.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	19275	20936	.	-	.	ID=gene-C9F05_RS18815;Name=tar;gbkey=Gene;gene=tar;gene_biotype=protein_coding;locus_tag=C9F05_RS18815;old_locus_tag=C9F05_19355
NZ_PYKE01000283.1	Protein Homology	CDS	19275	20936	.	-	0	ID=cds-WP_000483267.1;Parent=gene-C9F05_RS18815;Dbxref=GenBank:WP_000483267.1;Name=WP_000483267.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;gene=tar;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460876.1;locus_tag=C9F05_RS18815;product=methyl-accepting chemotaxis protein II;protein_id=WP_000483267.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	21173	21676	.	-	.	ID=gene-C9F05_RS18820;Name=cheW;gbkey=Gene;gene=cheW;gene_biotype=protein_coding;locus_tag=C9F05_RS18820;old_locus_tag=C9F05_19360
NZ_PYKE01000283.1	Protein Homology	CDS	21173	21676	.	-	0	ID=cds-WP_000147295.1;Parent=gene-C9F05_RS18820;Dbxref=GenBank:WP_000147295.1;Name=WP_000147295.1;gbkey=CDS;gene=cheW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460877.1;locus_tag=C9F05_RS18820;product=chemotaxis protein CheW;protein_id=WP_000147295.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	21697	23712	.	-	.	ID=gene-C9F05_RS18825;Name=cheA;gbkey=Gene;gene=cheA;gene_biotype=protein_coding;locus_tag=C9F05_RS18825;old_locus_tag=C9F05_19365
NZ_PYKE01000283.1	Protein Homology	CDS	21697	23712	.	-	0	ID=cds-WP_017441851.1;Parent=gene-C9F05_RS18825;Dbxref=GenBank:WP_017441851.1;Name=WP_017441851.1;Ontology_term=GO:0000160,GO:0006935,GO:0016310,GO:0000155;gbkey=CDS;gene=cheA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,chemotaxis|0006935||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460878.1;locus_tag=C9F05_RS18825;product=chemotaxis protein CheA;protein_id=WP_017441851.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	23717	24646	.	-	.	ID=gene-C9F05_RS18830;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=C9F05_RS18830;old_locus_tag=C9F05_19370
NZ_PYKE01000283.1	Protein Homology	CDS	23717	24646	.	-	0	ID=cds-WP_000795653.1;Parent=gene-C9F05_RS18830;Dbxref=GenBank:WP_000795653.1;Name=WP_000795653.1;gbkey=CDS;gene=motB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460879.1;locus_tag=C9F05_RS18830;product=flagellar motor protein MotB;protein_id=WP_000795653.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	24643	25530	.	-	.	ID=gene-C9F05_RS18835;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=C9F05_RS18835;old_locus_tag=C9F05_19375
NZ_PYKE01000283.1	Protein Homology	CDS	24643	25530	.	-	0	ID=cds-WP_000906312.1;Parent=gene-C9F05_RS18835;Dbxref=GenBank:WP_000906312.1;Name=WP_000906312.1;gbkey=CDS;gene=motA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460880.1;locus_tag=C9F05_RS18835;product=flagellar motor stator protein MotA;protein_id=WP_000906312.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	25654	26238	.	-	.	ID=gene-C9F05_RS18840;Name=flhC;gbkey=Gene;gene=flhC;gene_biotype=protein_coding;locus_tag=C9F05_RS18840;old_locus_tag=C9F05_19380
NZ_PYKE01000283.1	Protein Homology	CDS	25654	26238	.	-	0	ID=cds-WP_000605987.1;Parent=gene-C9F05_RS18840;Dbxref=GenBank:WP_000605987.1;Name=WP_000605987.1;Ontology_term=GO:0045893,GO:1902208,GO:0003677;gbkey=CDS;gene=flhC;go_function=DNA binding|0003677||IEA;go_process=positive regulation of DNA-templated transcription|0045893||IEA,regulation of bacterial-type flagellum assembly|1902208||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460881.3;locus_tag=C9F05_RS18840;product=flagellar transcriptional regulator FlhC;protein_id=WP_000605987.1;transl_table=11
NZ_PYKE01000283.1	RefSeq	gene	26235	26576	.	-	.	ID=gene-C9F05_RS18845;Name=flhD;gbkey=Gene;gene=flhD;gene_biotype=protein_coding;locus_tag=C9F05_RS18845;old_locus_tag=C9F05_19385
NZ_PYKE01000283.1	Protein Homology	CDS	26235	26576	.	-	0	ID=cds-WP_001518146.1;Parent=gene-C9F05_RS18845;Dbxref=GenBank:WP_001518146.1;Name=WP_001518146.1;Ontology_term=GO:0045893,GO:1902208,GO:0003677;gbkey=CDS;gene=flhD;go_function=DNA binding|0003677||IEA;go_process=positive regulation of DNA-templated transcription|0045893||IEA,regulation of bacterial-type flagellum assembly|1902208||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310629.2;locus_tag=C9F05_RS18845;product=flagellar transcriptional regulator FlhD;protein_id=WP_001518146.1;transl_table=11
##sequence-region NZ_PYKE01000195.1 1 3259
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000195.1	RefSeq	region	1	3259	.	+	.	ID=NZ_PYKE01000195.1:1..3259;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000195.1	RefSeq	gene	249	503	.	-	.	ID=gene-C9F05_RS12750;Name=C9F05_RS12750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12750;old_locus_tag=C9F05_13120
NZ_PYKE01000195.1	Protein Homology	CDS	249	503	.	-	0	ID=cds-WP_023209193.1;Parent=gene-C9F05_RS12750;Dbxref=GenBank:WP_023209193.1;Name=WP_023209193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675765.1;locus_tag=C9F05_RS12750;product=zinc/iron-chelating domain-containing protein;protein_id=WP_023209193.1;transl_table=11
NZ_PYKE01000195.1	RefSeq	gene	827	1399	.	+	.	ID=gene-C9F05_RS12755;Name=yeiP;gbkey=Gene;gene=yeiP;gene_biotype=protein_coding;locus_tag=C9F05_RS12755;old_locus_tag=C9F05_13125
NZ_PYKE01000195.1	Protein Homology	CDS	827	1399	.	+	0	ID=cds-WP_001136822.1;Parent=gene-C9F05_RS12755;Dbxref=GenBank:WP_001136822.1;Name=WP_001136822.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=yeiP;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007750416.1;locus_tag=C9F05_RS12755;product=elongation factor P-like protein YeiP;protein_id=WP_001136822.1;transl_table=11
NZ_PYKE01000195.1	RefSeq	gene	1612	2598	.	+	.	ID=gene-C9F05_RS12760;Name=C9F05_RS12760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12760;old_locus_tag=C9F05_13130
NZ_PYKE01000195.1	Protein Homology	CDS	1612	2598	.	+	0	ID=cds-WP_000169350.1;Parent=gene-C9F05_RS12760;Dbxref=GenBank:WP_000169350.1;Name=WP_000169350.1;Ontology_term=GO:0003924,GO:0005525,GO:0046872;gbkey=CDS;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461156.1;locus_tag=C9F05_RS12760;product=CobW family GTP-binding protein;protein_id=WP_000169350.1;transl_table=11
NZ_PYKE01000195.1	RefSeq	gene	2628	3259	.	+	.	ID=gene-C9F05_RS12765;Name=C9F05_RS12765;end_range=3259,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12765;old_locus_tag=C9F05_13135;partial=true
NZ_PYKE01000195.1	Protein Homology	CDS	2628	3259	.	+	0	ID=cds-WP_135370335.1;Parent=gene-C9F05_RS12765;Dbxref=GenBank:WP_135370335.1;Name=WP_135370335.1;end_range=3259,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461157.1;locus_tag=C9F05_RS12765;partial=true;product=phosphatase PAP2 family protein;protein_id=WP_135370335.1;transl_table=11
##sequence-region NZ_PYKE01000132.1 1 27068
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000132.1	RefSeq	region	1	27068	.	+	.	ID=NZ_PYKE01000132.1:1..27068;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000132.1	RefSeq	gene	289	1380	.	+	.	ID=gene-C9F05_RS09600;Name=ompF;gbkey=Gene;gene=ompF;gene_biotype=protein_coding;locus_tag=C9F05_RS09600;old_locus_tag=C9F05_09850
NZ_PYKE01000132.1	Protein Homology	CDS	289	1380	.	+	0	ID=cds-WP_135370217.1;Parent=gene-C9F05_RS09600;Dbxref=GenBank:WP_135370217.1;Name=WP_135370217.1;gbkey=CDS;gene=ompF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459974.1;locus_tag=C9F05_RS09600;product=porin OmpF;protein_id=WP_135370217.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	1565	2755	.	+	.	ID=gene-C9F05_RS09605;Name=aspC;gbkey=Gene;gene=aspC;gene_biotype=protein_coding;locus_tag=C9F05_RS09605;old_locus_tag=C9F05_09855
NZ_PYKE01000132.1	Protein Homology	CDS	1565	2755	.	+	0	ID=cds-WP_061380411.1;Parent=gene-C9F05_RS09605;Dbxref=GenBank:WP_061380411.1;Name=WP_061380411.1;gbkey=CDS;gene=aspC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009653304.1;locus_tag=C9F05_RS09605;product=aspartate transaminase;protein_id=WP_061380411.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	2817	3464	.	-	.	ID=gene-C9F05_RS09610;Name=C9F05_RS09610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09610;old_locus_tag=C9F05_09860
NZ_PYKE01000132.1	Protein Homology	CDS	2817	3464	.	-	0	ID=cds-WP_001109471.1;Parent=gene-C9F05_RS09610;Dbxref=GenBank:WP_001109471.1;Name=WP_001109471.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003035823.1;locus_tag=C9F05_RS09610;product=MBL fold metallo-hydrolase;protein_id=WP_001109471.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	3492	4040	.	-	.	ID=gene-C9F05_RS09615;Name=C9F05_RS09615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09615;old_locus_tag=C9F05_09865
NZ_PYKE01000132.1	Protein Homology	CDS	3492	4040	.	-	0	ID=cds-WP_000357052.1;Parent=gene-C9F05_RS09615;Dbxref=GenBank:WP_000357052.1;Name=WP_000357052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459971.1;locus_tag=C9F05_RS09615;product=YcbK family protein;protein_id=WP_000357052.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	4298	6145	.	-	.	ID=gene-C9F05_RS09620;Name=ldtD;gbkey=Gene;gene=ldtD;gene_biotype=protein_coding;locus_tag=C9F05_RS09620;old_locus_tag=C9F05_09875
NZ_PYKE01000132.1	Protein Homology	CDS	4298	6145	.	-	0	ID=cds-WP_000925875.1;Parent=gene-C9F05_RS09620;Dbxref=GenBank:WP_000925875.1;Name=WP_000925875.1;Ontology_term=GO:0016740;gbkey=CDS;gene=ldtD;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459970.1;locus_tag=C9F05_RS09620;product=L%2CD-transpeptidase;protein_id=WP_000925875.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	6490	10956	.	-	.	ID=gene-C9F05_RS09630;Name=mukB;gbkey=Gene;gene=mukB;gene_biotype=protein_coding;locus_tag=C9F05_RS09630;old_locus_tag=C9F05_09880
NZ_PYKE01000132.1	Protein Homology	CDS	6490	10956	.	-	0	ID=cds-WP_023242430.1;Parent=gene-C9F05_RS09630;Dbxref=GenBank:WP_023242430.1;Name=WP_023242430.1;Ontology_term=GO:0007059,GO:0030261,GO:0003677;gbkey=CDS;gene=mukB;go_function=DNA binding|0003677||IEA;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459969.1;locus_tag=C9F05_RS09630;product=chromosome partition protein MukB;protein_id=WP_023242430.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	10956	11660	.	-	.	ID=gene-C9F05_RS09635;Name=mukE;gbkey=Gene;gene=mukE;gene_biotype=protein_coding;locus_tag=C9F05_RS09635;old_locus_tag=C9F05_09885
NZ_PYKE01000132.1	Protein Homology	CDS	10956	11660	.	-	0	ID=cds-WP_000060025.1;Parent=gene-C9F05_RS09635;Dbxref=GenBank:WP_000060025.1;Name=WP_000060025.1;Ontology_term=GO:0007059,GO:0030261;gbkey=CDS;gene=mukE;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459968.1;locus_tag=C9F05_RS09635;product=chromosome partition protein MukE;protein_id=WP_000060025.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	11641	12963	.	-	.	ID=gene-C9F05_RS09640;Name=mukF;gbkey=Gene;gene=mukF;gene_biotype=protein_coding;locus_tag=C9F05_RS09640;old_locus_tag=C9F05_09890
NZ_PYKE01000132.1	Protein Homology	CDS	11641	12963	.	-	0	ID=cds-WP_001288828.1;Parent=gene-C9F05_RS09640;Dbxref=GenBank:WP_001288828.1;Name=WP_001288828.1;Ontology_term=GO:0007059,GO:0005509;gbkey=CDS;gene=mukF;go_function=calcium ion binding|0005509||IEA;go_process=chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123549.1;locus_tag=C9F05_RS09640;product=chromosome partition protein MukF;protein_id=WP_001288828.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	12956	13759	.	-	.	ID=gene-C9F05_RS09645;Name=cmoM;gbkey=Gene;gene=cmoM;gene_biotype=protein_coding;locus_tag=C9F05_RS09645;old_locus_tag=C9F05_09895
NZ_PYKE01000132.1	Protein Homology	CDS	12956	13759	.	-	0	ID=cds-WP_001154025.1;Parent=gene-C9F05_RS09645;Dbxref=GenBank:WP_001154025.1;Name=WP_001154025.1;gbkey=CDS;gene=cmoM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459966.1;locus_tag=C9F05_RS09645;product=tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM;protein_id=WP_001154025.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	13895	14671	.	+	.	ID=gene-C9F05_RS09650;Name=elyC;gbkey=Gene;gene=elyC;gene_biotype=protein_coding;locus_tag=C9F05_RS09650;old_locus_tag=C9F05_09900
NZ_PYKE01000132.1	Protein Homology	CDS	13895	14671	.	+	0	ID=cds-WP_135370218.1;Parent=gene-C9F05_RS09650;Dbxref=GenBank:WP_135370218.1;Name=WP_135370218.1;gbkey=CDS;gene=elyC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459965.1;locus_tag=C9F05_RS09650;product=envelope biogenesis factor ElyC;protein_id=WP_135370218.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	14651	15544	.	-	.	ID=gene-C9F05_RS09655;Name=C9F05_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09655;old_locus_tag=C9F05_09905
NZ_PYKE01000132.1	Protein Homology	CDS	14651	15544	.	-	0	ID=cds-WP_000436889.1;Parent=gene-C9F05_RS09655;Dbxref=GenBank:WP_000436889.1;Name=WP_000436889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459964.1;locus_tag=C9F05_RS09655;product=YcbJ family phosphotransferase;protein_id=WP_000436889.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	15755	16501	.	-	.	ID=gene-C9F05_RS09665;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=C9F05_RS09665;old_locus_tag=C9F05_09910
NZ_PYKE01000132.1	Protein Homology	CDS	15755	16501	.	-	0	ID=cds-WP_000011576.1;Parent=gene-C9F05_RS09665;Dbxref=GenBank:WP_000011576.1;Name=WP_000011576.1;Ontology_term=GO:0009244,GO:0008690;gbkey=CDS;gene=kdsB;go_function=3-deoxy-manno-octulosonate cytidylyltransferase activity|0008690||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459963.1;locus_tag=C9F05_RS09665;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_000011576.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	16498	16680	.	-	.	ID=gene-C9F05_RS09670;Name=ycaR;gbkey=Gene;gene=ycaR;gene_biotype=protein_coding;locus_tag=C9F05_RS09670;old_locus_tag=C9F05_09915
NZ_PYKE01000132.1	Protein Homology	CDS	16498	16680	.	-	0	ID=cds-WP_000350061.1;Parent=gene-C9F05_RS09670;Dbxref=GenBank:WP_000350061.1;Name=WP_000350061.1;gbkey=CDS;gene=ycaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459962.1;locus_tag=C9F05_RS09670;product=protein YcaR;protein_id=WP_000350061.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	16732	17964	.	-	.	ID=gene-C9F05_RS09675;Name=C9F05_RS09675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09675;old_locus_tag=C9F05_09920
NZ_PYKE01000132.1	Protein Homology	CDS	16732	17964	.	-	0	ID=cds-WP_135370219.1;Parent=gene-C9F05_RS09675;Dbxref=GenBank:WP_135370219.1;Name=WP_135370219.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459961.1;locus_tag=C9F05_RS09675;product=winged helix-turn-helix domain-containing protein;protein_id=WP_135370219.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	18008	18985	.	-	.	ID=gene-C9F05_RS09680;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=C9F05_RS09680;old_locus_tag=C9F05_09925
NZ_PYKE01000132.1	Protein Homology	CDS	18008	18985	.	-	0	ID=cds-WP_000561679.1;Parent=gene-C9F05_RS09680;Dbxref=GenBank:WP_000561679.1;Name=WP_000561679.1;Ontology_term=GO:0009245,GO:0009029;gbkey=CDS;gene=lpxK;go_function=lipid-A 4'-kinase activity|0009029||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459960.1;locus_tag=C9F05_RS09680;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_000561679.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	18982	20730	.	-	.	ID=gene-C9F05_RS09685;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=C9F05_RS09685;old_locus_tag=C9F05_09930
NZ_PYKE01000132.1	Protein Homology	CDS	18982	20730	.	-	0	ID=cds-WP_000551246.1;Parent=gene-C9F05_RS09685;Dbxref=GenBank:WP_000551246.1;Name=WP_000551246.1;Ontology_term=GO:0055085,GO:0005524,GO:0034040,GO:0140359,GO:0016020;gbkey=CDS;gene=msbA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled lipid transmembrane transporter activity|0034040||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459959.1;locus_tag=C9F05_RS09685;product=lipid A ABC transporter ATP-binding protein/permease MsbA;protein_id=WP_000551246.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	20767	23031	.	-	.	ID=gene-C9F05_RS09690;Name=C9F05_RS09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09690;old_locus_tag=C9F05_09935
NZ_PYKE01000132.1	Protein Homology	CDS	20767	23031	.	-	0	ID=cds-WP_135370220.1;Parent=gene-C9F05_RS09690;Dbxref=GenBank:WP_135370220.1;Name=WP_135370220.1;Ontology_term=GO:0030420,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=establishment of competence for transformation|0030420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459958.1;locus_tag=C9F05_RS09690;product=ComEC family protein;protein_id=WP_135370220.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	23261	23545	.	-	.	ID=gene-C9F05_RS09695;Name=ihfB;gbkey=Gene;gene=ihfB;gene_biotype=protein_coding;locus_tag=C9F05_RS09695;old_locus_tag=C9F05_09940
NZ_PYKE01000132.1	Protein Homology	CDS	23261	23545	.	-	0	ID=cds-WP_000167332.1;Parent=gene-C9F05_RS09695;Dbxref=GenBank:WP_000167332.1;Name=WP_000167332.1;Ontology_term=GO:0006310,GO:0006355,GO:0006417,GO:0075713,GO:0003677,GO:0005694;gbkey=CDS;gene=ihfB;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA,regulation of translation|0006417||IEA,establishment of integrated proviral latency|0075713||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006819309.1;locus_tag=C9F05_RS09695;product=integration host factor subunit beta;protein_id=WP_000167332.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	23701	25374	.	-	.	ID=gene-C9F05_RS09700;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=C9F05_RS09700;old_locus_tag=C9F05_09945
NZ_PYKE01000132.1	Protein Homology	CDS	23701	25374	.	-	0	ID=cds-WP_000140324.1;Parent=gene-C9F05_RS09700;Dbxref=GenBank:WP_000140324.1;Name=WP_000140324.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsA;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123560.1;locus_tag=C9F05_RS09700;product=30S ribosomal protein S1;protein_id=WP_000140324.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	25488	26171	.	-	.	ID=gene-C9F05_RS09705;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=C9F05_RS09705;old_locus_tag=C9F05_09950
NZ_PYKE01000132.1	Protein Homology	CDS	25488	26171	.	-	0	ID=cds-WP_000125007.1;Parent=gene-C9F05_RS09705;Dbxref=GenBank:WP_000125007.1;Name=WP_000125007.1;Ontology_term=GO:0015949,GO:0005524,GO:0036431;gbkey=CDS;gene=cmk;go_function=ATP binding|0005524||IEA,dCMP kinase activity|0036431||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000125007.1;locus_tag=C9F05_RS09705;product=(d)CMP kinase;protein_id=WP_000125007.1;transl_table=11
NZ_PYKE01000132.1	RefSeq	gene	26344	27068	.	-	.	ID=gene-C9F05_RS09710;Name=C9F05_RS09710;end_range=27068,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09710;old_locus_tag=C9F05_09955;partial=true
NZ_PYKE01000132.1	Protein Homology	CDS	26344	27068	.	-	2	ID=cds-WP_134815449.1;Parent=gene-C9F05_RS09710;Dbxref=GenBank:WP_134815449.1;Name=WP_134815449.1;Ontology_term=GO:0004222,GO:0008237,GO:0046872,GO:0016020;end_range=27068,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459954.1;locus_tag=C9F05_RS09710;partial=true;product=M48 family metallopeptidase;protein_id=WP_134815449.1;transl_table=11
##sequence-region NZ_PYKE01000221.1 1 3179
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000221.1	RefSeq	region	1	3179	.	+	.	ID=NZ_PYKE01000221.1:1..3179;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000221.1	RefSeq	gene	1	1295	.	-	.	ID=gene-C9F05_RS14665;Name=siiC;gbkey=Gene;gene=siiC;gene_biotype=protein_coding;locus_tag=C9F05_RS14665;old_locus_tag=C9F05_15075;partial=true;start_range=.,1
NZ_PYKE01000221.1	Protein Homology	CDS	1	1295	.	-	0	ID=cds-WP_135370408.1;Parent=gene-C9F05_RS14665;Dbxref=GenBank:WP_135370408.1;Name=WP_135370408.1;gbkey=CDS;gene=siiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463124.1;locus_tag=C9F05_RS14665;partial=true;product=SPI-4 type I secretion system protein SiiC;protein_id=WP_135370408.1;start_range=.,1;transl_table=11
NZ_PYKE01000221.1	RefSeq	gene	1285	2673	.	-	.	ID=gene-C9F05_RS14670;Name=C9F05_RS14670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14670;old_locus_tag=C9F05_15080
NZ_PYKE01000221.1	Protein Homology	CDS	1285	2673	.	-	0	ID=cds-WP_023181267.1;Parent=gene-C9F05_RS14670;Dbxref=GenBank:WP_023181267.1;Name=WP_023181267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463123.1;locus_tag=C9F05_RS14670;product=MotA/TolQ/ExbB proton channel family protein;protein_id=WP_023181267.1;transl_table=11
NZ_PYKE01000221.1	RefSeq	gene	2670	3179	.	-	.	ID=gene-C9F05_RS14675;Name=siiA;end_range=3179,.;gbkey=Gene;gene=siiA;gene_biotype=protein_coding;locus_tag=C9F05_RS14675;old_locus_tag=C9F05_15085;partial=true
NZ_PYKE01000221.1	Protein Homology	CDS	2670	3179	.	-	0	ID=cds-WP_135370409.1;Parent=gene-C9F05_RS14675;Dbxref=GenBank:WP_135370409.1;Name=WP_135370409.1;end_range=3179,.;gbkey=CDS;gene=siiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463122.1;locus_tag=C9F05_RS14675;partial=true;product=SPI-4 type I secretion system auxiliary protein SiiA;protein_id=WP_135370409.1;transl_table=11
##sequence-region NZ_PYKE01000276.1 1 3156
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000276.1	RefSeq	region	1	3156	.	+	.	ID=NZ_PYKE01000276.1:1..3156;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000276.1	RefSeq	gene	102	599	.	-	.	ID=gene-C9F05_RS18340;Name=C9F05_RS18340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18340;old_locus_tag=C9F05_18870
NZ_PYKE01000276.1	Protein Homology	CDS	102	599	.	-	0	ID=cds-WP_023209685.1;Parent=gene-C9F05_RS18340;Dbxref=GenBank:WP_023209685.1;Name=WP_023209685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000789648.1;locus_tag=C9F05_RS18340;product=Saf-pilin pilus formation protein SafA;protein_id=WP_023209685.1;transl_table=11
NZ_PYKE01000276.1	RefSeq	gene	732	1226	.	-	.	ID=gene-C9F05_RS18345;Name=C9F05_RS18345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18345;old_locus_tag=C9F05_18875
NZ_PYKE01000276.1	Protein Homology	CDS	732	1226	.	-	0	ID=cds-WP_127173012.1;Parent=gene-C9F05_RS18345;Dbxref=GenBank:WP_127173012.1;Name=WP_127173012.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000789624.1;locus_tag=C9F05_RS18345;product=hypothetical protein;protein_id=WP_127173012.1;transl_table=11
NZ_PYKE01000276.1	RefSeq	pseudogene	1994	2564	.	-	.	ID=gene-C9F05_RS18350;Name=C9F05_RS18350;end_range=2564,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS18350;old_locus_tag=C9F05_18880;partial=true;pseudo=true
NZ_PYKE01000276.1	Protein Homology	CDS	1994	2564	.	-	0	ID=cds-C9F05_RS18350;Parent=gene-C9F05_RS18350;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;end_range=2564,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013365374.1;locus_tag=C9F05_RS18350;partial=true;product=integrase core domain-containing protein;pseudo=true;transl_table=11
NZ_PYKE01000276.1	RefSeq	gene	2498	2695	.	-	.	ID=gene-C9F05_RS24200;Name=C9F05_RS24200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24200
NZ_PYKE01000276.1	Protein Homology	CDS	2498	2695	.	-	0	ID=cds-WP_001224072.1;Parent=gene-C9F05_RS24200;Dbxref=GenBank:WP_001224072.1;Name=WP_001224072.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013677.6;locus_tag=C9F05_RS24200;product=transposase;protein_id=WP_001224072.1;transl_table=11
NZ_PYKE01000276.1	RefSeq	gene	2748	3053	.	+	.	ID=gene-C9F05_RS18355;Name=C9F05_RS18355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18355;old_locus_tag=C9F05_18885
NZ_PYKE01000276.1	Protein Homology	CDS	2748	3053	.	+	0	ID=cds-WP_135370525.1;Parent=gene-C9F05_RS18355;Dbxref=GenBank:WP_135370525.1;Name=WP_135370525.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632802.1;locus_tag=C9F05_RS18355;product=SymE family type I addiction module toxin;protein_id=WP_135370525.1;transl_table=11
##sequence-region NZ_PYKE01000346.1 1 3120
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000346.1	RefSeq	region	1	3120	.	+	.	ID=NZ_PYKE01000346.1:1..3120;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000346.1	RefSeq	gene	584	3120	.	-	.	ID=gene-C9F05_RS23510;Name=C9F05_RS23510;end_range=3120,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23510;old_locus_tag=C9F05_24105;partial=true
NZ_PYKE01000346.1	Protein Homology	CDS	584	3120	.	-	2	ID=cds-WP_135370692.1;Parent=gene-C9F05_RS23510;Dbxref=GenBank:WP_135370692.1;Name=WP_135370692.1;Ontology_term=GO:0019867;end_range=3120,.;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747458.1;locus_tag=C9F05_RS23510;partial=true;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_135370692.1;transl_table=11
##sequence-region NZ_PYKE01000292.1 1 3065
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000292.1	RefSeq	region	1	3065	.	+	.	ID=NZ_PYKE01000292.1:1..3065;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000292.1	RefSeq	gene	1	1406	.	+	.	ID=gene-C9F05_RS19650;Name=C9F05_RS19650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19650;old_locus_tag=C9F05_20200;partial=true;start_range=.,1
NZ_PYKE01000292.1	Protein Homology	CDS	1	1406	.	+	2	ID=cds-WP_135370565.1;Parent=gene-C9F05_RS19650;Dbxref=GenBank:WP_135370565.1;Name=WP_135370565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461027.1;locus_tag=C9F05_RS19650;partial=true;product=undecaprenyl-phosphate galactose phosphotransferase;protein_id=WP_135370565.1;start_range=.,1;transl_table=11
NZ_PYKE01000292.1	RefSeq	gene	1570	2976	.	+	.	ID=gene-C9F05_RS19655;Name=gndA;gbkey=Gene;gene=gndA;gene_biotype=protein_coding;locus_tag=C9F05_RS19655;old_locus_tag=C9F05_20205
NZ_PYKE01000292.1	Protein Homology	CDS	1570	2976	.	+	0	ID=cds-WP_000043532.1;Parent=gene-C9F05_RS19655;Dbxref=GenBank:WP_000043532.1;Name=WP_000043532.1;Ontology_term=GO:0006098,GO:0004616,GO:0050661;gbkey=CDS;gene=gndA;go_function=phosphogluconate dehydrogenase (decarboxylating) activity|0004616||IEA,NADP binding|0050661||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461026.1;locus_tag=C9F05_RS19655;product=NADP-dependent phosphogluconate dehydrogenase;protein_id=WP_000043532.1;transl_table=11
##sequence-region NZ_PYKE01000112.1 1 26681
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000112.1	RefSeq	region	1	26681	.	+	.	ID=NZ_PYKE01000112.1:1..26681;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000112.1	RefSeq	gene	272	1645	.	+	.	ID=gene-C9F05_RS08300;Name=aroP;gbkey=Gene;gene=aroP;gene_biotype=protein_coding;locus_tag=C9F05_RS08300;old_locus_tag=C9F05_08495
NZ_PYKE01000112.1	Protein Homology	CDS	272	1645	.	+	0	ID=cds-WP_000969487.1;Parent=gene-C9F05_RS08300;Dbxref=GenBank:WP_000969487.1;Name=WP_000969487.1;Ontology_term=GO:0006865;gbkey=CDS;gene=aroP;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459155.1;locus_tag=C9F05_RS08300;product=aromatic amino acid transporter AroP;protein_id=WP_000969487.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	1809	3215	.	+	.	ID=gene-C9F05_RS08305;Name=C9F05_RS08305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08305;old_locus_tag=C9F05_08500
NZ_PYKE01000112.1	Protein Homology	CDS	1809	3215	.	+	0	ID=cds-WP_000357540.1;Parent=gene-C9F05_RS08305;Dbxref=GenBank:WP_000357540.1;Name=WP_000357540.1;Ontology_term=GO:0006812,GO:0008643,GO:0015486,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=glycoside-pentoside-hexuronide:cation symporter activity|0015486||IEA;go_process=monoatomic cation transport|0006812||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459154.1;locus_tag=C9F05_RS08305;product=glycoside-pentoside-hexuronide (GPH):cation symporter;protein_id=WP_000357540.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	3215	4165	.	+	.	ID=gene-C9F05_RS08310;Name=C9F05_RS08310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08310;old_locus_tag=C9F05_08505
NZ_PYKE01000112.1	Protein Homology	CDS	3215	4165	.	+	0	ID=cds-WP_080087415.1;Parent=gene-C9F05_RS08310;Dbxref=GenBank:WP_080087415.1;Name=WP_080087415.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459153.1;locus_tag=C9F05_RS08310;product=glycoside hydrolase family 43 protein;protein_id=WP_080087415.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	4257	5111	.	-	.	ID=gene-C9F05_RS08315;Name=ampE;gbkey=Gene;gene=ampE;gene_biotype=protein_coding;locus_tag=C9F05_RS08315;old_locus_tag=C9F05_08510
NZ_PYKE01000112.1	Protein Homology	CDS	4257	5111	.	-	0	ID=cds-WP_000172039.1;Parent=gene-C9F05_RS08315;Dbxref=GenBank:WP_000172039.1;Name=WP_000172039.1;gbkey=CDS;gene=ampE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459152.1;locus_tag=C9F05_RS08315;product=beta-lactamase regulator AmpE;protein_id=WP_000172039.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	5108	5671	.	-	.	ID=gene-C9F05_RS08320;Name=ampD;gbkey=Gene;gene=ampD;gene_biotype=protein_coding;locus_tag=C9F05_RS08320;old_locus_tag=C9F05_08515
NZ_PYKE01000112.1	Protein Homology	CDS	5108	5671	.	-	0	ID=cds-WP_000936329.1;Parent=gene-C9F05_RS08320;Dbxref=GenBank:WP_000936329.1;Name=WP_000936329.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=ampD;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459151.1;locus_tag=C9F05_RS08320;product=1%2C6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD;protein_id=WP_000936329.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	5759	6652	.	+	.	ID=gene-C9F05_RS08325;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=C9F05_RS08325;old_locus_tag=C9F05_08520
NZ_PYKE01000112.1	Protein Homology	CDS	5759	6652	.	+	0	ID=cds-WP_001135135.1;Parent=gene-C9F05_RS08325;Dbxref=GenBank:WP_001135135.1;Name=WP_001135135.1;Ontology_term=GO:0009435,GO:0004514;gbkey=CDS;gene=nadC;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=NAD+ biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459150.1;locus_tag=C9F05_RS08325;product=carboxylating nicotinate-nucleotide diphosphorylase;protein_id=WP_001135135.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	6874	7311	.	+	.	ID=gene-C9F05_RS08335;Name=ppdD;gbkey=Gene;gene=ppdD;gene_biotype=protein_coding;locus_tag=C9F05_RS08335;old_locus_tag=C9F05_08530
NZ_PYKE01000112.1	Protein Homology	CDS	6874	7311	.	+	0	ID=cds-WP_000414989.1;Parent=gene-C9F05_RS08335;Dbxref=GenBank:WP_000414989.1;Name=WP_000414989.1;gbkey=CDS;gene=ppdD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459149.1;locus_tag=C9F05_RS08335;product=prepilin peptidase-dependent pilin;protein_id=WP_000414989.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	7321	8706	.	+	.	ID=gene-C9F05_RS08340;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=C9F05_RS08340;old_locus_tag=C9F05_08535
NZ_PYKE01000112.1	Protein Homology	CDS	7321	8706	.	+	0	ID=cds-WP_000650597.1;Parent=gene-C9F05_RS08340;Dbxref=GenBank:WP_000650597.1;Name=WP_000650597.1;gbkey=CDS;gene=gspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459148.1;locus_tag=C9F05_RS08340;product=type II secretion system protein GspE;protein_id=WP_000650597.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	8696	9898	.	+	.	ID=gene-C9F05_RS08345;Name=hofC;gbkey=Gene;gene=hofC;gene_biotype=protein_coding;locus_tag=C9F05_RS08345;old_locus_tag=C9F05_08540
NZ_PYKE01000112.1	Protein Homology	CDS	8696	9898	.	+	0	ID=cds-WP_135370177.1;Parent=gene-C9F05_RS08345;Dbxref=GenBank:WP_135370177.1;Name=WP_135370177.1;Ontology_term=GO:0004827;gbkey=CDS;gene=hofC;go_function=proline-tRNA ligase activity|0004827||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459147.1;locus_tag=C9F05_RS08345;product=protein transport protein HofC;protein_id=WP_135370177.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	9929	10972	.	-	.	ID=gene-C9F05_RS08350;Name=C9F05_RS08350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08350;old_locus_tag=C9F05_08545
NZ_PYKE01000112.1	Protein Homology	CDS	9929	10972	.	-	0	ID=cds-WP_001217365.1;Parent=gene-C9F05_RS08350;Dbxref=GenBank:WP_001217365.1;Name=WP_001217365.1;Ontology_term=GO:0009117,GO:0003920;gbkey=CDS;go_function=GMP reductase activity|0003920||IEA;go_process=nucleotide metabolic process|0009117||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461816.1;locus_tag=C9F05_RS08350;product=GMP reductase;protein_id=WP_001217365.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	11198	11818	.	+	.	ID=gene-C9F05_RS08355;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=C9F05_RS08355;old_locus_tag=C9F05_08550
NZ_PYKE01000112.1	Protein Homology	CDS	11198	11818	.	+	0	ID=cds-WP_001270913.1;Parent=gene-C9F05_RS08355;Dbxref=GenBank:WP_001270913.1;Name=WP_001270913.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005524,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA,ATP binding|0005524||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459145.1;locus_tag=C9F05_RS08355;product=dephospho-CoA kinase;protein_id=WP_001270913.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	11818	12561	.	+	.	ID=gene-C9F05_RS08360;Name=zapD;gbkey=Gene;gene=zapD;gene_biotype=protein_coding;locus_tag=C9F05_RS08360;old_locus_tag=C9F05_08555
NZ_PYKE01000112.1	Protein Homology	CDS	11818	12561	.	+	0	ID=cds-WP_000557441.1;Parent=gene-C9F05_RS08360;Dbxref=GenBank:WP_000557441.1;Name=WP_000557441.1;gbkey=CDS;gene=zapD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459144.1;locus_tag=C9F05_RS08360;product=cell division protein ZapD;protein_id=WP_000557441.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	12571	12762	.	+	.	ID=gene-C9F05_RS08365;Name=yacG;gbkey=Gene;gene=yacG;gene_biotype=protein_coding;locus_tag=C9F05_RS08365;old_locus_tag=C9F05_08560
NZ_PYKE01000112.1	Protein Homology	CDS	12571	12762	.	+	0	ID=cds-WP_001286419.1;Parent=gene-C9F05_RS08365;Dbxref=GenBank:WP_001286419.1;Name=WP_001286419.1;Ontology_term=GO:0006355,GO:0008270;gbkey=CDS;gene=yacG;go_function=zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459143.1;locus_tag=C9F05_RS08365;product=DNA gyrase inhibitor YacG;protein_id=WP_001286419.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	12759	13700	.	-	.	ID=gene-C9F05_RS08370;Name=C9F05_RS08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08370;old_locus_tag=C9F05_08565
NZ_PYKE01000112.1	Protein Homology	CDS	12759	13700	.	-	0	ID=cds-WP_001538994.1;Parent=gene-C9F05_RS08370;Dbxref=GenBank:WP_001538994.1;Name=WP_001538994.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001697068.1;locus_tag=C9F05_RS08370;product=LysR family transcriptional regulator;protein_id=WP_001538994.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	13786	14775	.	+	.	ID=gene-C9F05_RS08375;Name=C9F05_RS08375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08375;old_locus_tag=C9F05_08570
NZ_PYKE01000112.1	Protein Homology	CDS	13786	14775	.	+	0	ID=cds-WP_001200034.1;Parent=gene-C9F05_RS08375;Dbxref=GenBank:WP_001200034.1;Name=WP_001200034.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001200034.1;locus_tag=C9F05_RS08375;product=aldo/keto reductase;protein_id=WP_001200034.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	14809	15204	.	-	.	ID=gene-C9F05_RS08380;Name=mutT;gbkey=Gene;gene=mutT;gene_biotype=protein_coding;locus_tag=C9F05_RS08380;old_locus_tag=C9F05_08575
NZ_PYKE01000112.1	Protein Homology	CDS	14809	15204	.	-	0	ID=cds-WP_135370178.1;Parent=gene-C9F05_RS08380;Dbxref=GenBank:WP_135370178.1;Name=WP_135370178.1;Ontology_term=GO:0006281,GO:0008413;gbkey=CDS;gene=mutT;go_function=8-oxo-7%2C8-dihydroguanosine triphosphate pyrophosphatase activity|0008413||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000736055.1;locus_tag=C9F05_RS08380;product=8-oxo-dGTP diphosphatase MutT;protein_id=WP_135370178.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	15360	18065	.	-	.	ID=gene-C9F05_RS08385;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=C9F05_RS08385;old_locus_tag=C9F05_08580
NZ_PYKE01000112.1	Protein Homology	CDS	15360	18065	.	-	0	ID=cds-WP_135370179.1;Parent=gene-C9F05_RS08385;Dbxref=GenBank:WP_135370179.1;Name=WP_135370179.1;Ontology_term=GO:0006605,GO:0006886,GO:0017038,GO:0005524;gbkey=CDS;gene=secA;go_function=ATP binding|0005524||IEA;go_process=protein targeting|0006605||IEA,intracellular protein transport|0006886||IEA,protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459141.1;locus_tag=C9F05_RS08385;product=preprotein translocase subunit SecA;protein_id=WP_135370179.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	18127	18624	.	-	.	ID=gene-C9F05_RS08390;Name=secM;gbkey=Gene;gene=secM;gene_biotype=protein_coding;locus_tag=C9F05_RS08390;old_locus_tag=C9F05_08585
NZ_PYKE01000112.1	Protein Homology	CDS	18127	18624	.	-	0	ID=cds-WP_000014336.1;Parent=gene-C9F05_RS08390;Dbxref=GenBank:WP_000014336.1;Name=WP_000014336.1;Ontology_term=GO:0045182;gbkey=CDS;gene=secM;go_function=translation regulator activity|0045182||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308128.2;locus_tag=C9F05_RS08390;product=secA translation cis-regulator SecM;protein_id=WP_000014336.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	18902	19819	.	-	.	ID=gene-C9F05_RS08395;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=C9F05_RS08395;old_locus_tag=C9F05_08590
NZ_PYKE01000112.1	Protein Homology	CDS	18902	19819	.	-	0	ID=cds-WP_000595487.1;Parent=gene-C9F05_RS08395;Dbxref=GenBank:WP_000595487.1;Name=WP_000595487.1;Ontology_term=GO:0009245,GO:0103117;gbkey=CDS;gene=lpxC;go_function=UDP-3-O-acyl-N-acetylglucosamine deacetylase activity|0103117||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459139.1;locus_tag=C9F05_RS08395;product=UDP-3-O-acyl-N-acetylglucosamine deacetylase;protein_id=WP_000595487.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	19920	21071	.	-	.	ID=gene-C9F05_RS08400;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=C9F05_RS08400;old_locus_tag=C9F05_08595
NZ_PYKE01000112.1	Protein Homology	CDS	19920	21071	.	-	0	ID=cds-WP_000462785.1;Parent=gene-C9F05_RS08400;Dbxref=GenBank:WP_000462785.1;Name=WP_000462785.1;Ontology_term=GO:0000910,GO:0003924,GO:0005525;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965916.1;locus_tag=C9F05_RS08400;product=cell division protein FtsZ;protein_id=WP_000462785.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	21132	22394	.	-	.	ID=gene-C9F05_RS08405;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=C9F05_RS08405;old_locus_tag=C9F05_08600
NZ_PYKE01000112.1	Protein Homology	CDS	21132	22394	.	-	0	ID=cds-WP_000588463.1;Parent=gene-C9F05_RS08405;Dbxref=GenBank:WP_000588463.1;Name=WP_000588463.1;Ontology_term=GO:0051301,GO:0005515;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459137.1;locus_tag=C9F05_RS08405;product=cell division protein FtsA;protein_id=WP_000588463.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	22391	23221	.	-	.	ID=gene-C9F05_RS08410;Name=ftsQ;gbkey=Gene;gene=ftsQ;gene_biotype=protein_coding;locus_tag=C9F05_RS08410;old_locus_tag=C9F05_08605
NZ_PYKE01000112.1	Protein Homology	CDS	22391	23221	.	-	0	ID=cds-WP_000075728.1;Parent=gene-C9F05_RS08410;Dbxref=GenBank:WP_000075728.1;Name=WP_000075728.1;Ontology_term=GO:0090529;gbkey=CDS;gene=ftsQ;go_process=cell septum assembly|0090529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459136.1;locus_tag=C9F05_RS08410;product=cell division protein FtsQ;protein_id=WP_000075728.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	23223	24143	.	-	.	ID=gene-C9F05_RS08415;Name=C9F05_RS08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08415;old_locus_tag=C9F05_08610
NZ_PYKE01000112.1	Protein Homology	CDS	23223	24143	.	-	0	ID=cds-WP_000763905.1;Parent=gene-C9F05_RS08415;Dbxref=GenBank:WP_000763905.1;Name=WP_000763905.1;Ontology_term=GO:0009252,GO:0005524,GO:0008716,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,D-alanine-D-alanine ligase activity|0008716||IEA,metal ion binding|0046872||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459135.1;locus_tag=C9F05_RS08415;product=D-alanine--D-alanine ligase;protein_id=WP_000763905.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	24136	25611	.	-	.	ID=gene-C9F05_RS08420;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=C9F05_RS08420;old_locus_tag=C9F05_08615
NZ_PYKE01000112.1	Protein Homology	CDS	24136	25611	.	-	0	ID=cds-WP_001096070.1;Parent=gene-C9F05_RS08420;Dbxref=GenBank:WP_001096070.1;Name=WP_001096070.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459134.1;locus_tag=C9F05_RS08420;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_001096070.1;transl_table=11
NZ_PYKE01000112.1	RefSeq	gene	25730	26681	.	-	.	ID=gene-C9F05_RS08425;Name=murG;end_range=26681,.;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=C9F05_RS08425;old_locus_tag=C9F05_08620;partial=true
NZ_PYKE01000112.1	Protein Homology	CDS	25730	26681	.	-	1	ID=cds-WP_135370180.1;Parent=gene-C9F05_RS08425;Dbxref=GenBank:WP_135370180.1;Name=WP_135370180.1;Ontology_term=GO:0009252,GO:0050511;end_range=26681,.;gbkey=CDS;gene=murG;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459133.1;locus_tag=C9F05_RS08425;partial=true;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=WP_135370180.1;transl_table=11
##sequence-region NZ_PYKE01000153.1 1 2994
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000153.1	RefSeq	region	1	2994	.	+	.	ID=NZ_PYKE01000153.1:1..2994;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000153.1	RefSeq	gene	104	415	.	-	.	ID=gene-C9F05_RS10885;Name=yqfB;gbkey=Gene;gene=yqfB;gene_biotype=protein_coding;locus_tag=C9F05_RS10885;old_locus_tag=C9F05_11170
NZ_PYKE01000153.1	Protein Homology	CDS	104	415	.	-	0	ID=cds-WP_001182976.1;Parent=gene-C9F05_RS10885;Dbxref=GenBank:WP_001182976.1;Name=WP_001182976.1;gbkey=CDS;gene=yqfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461966.1;locus_tag=C9F05_RS10885;product=N(4)-acetylcytidine aminohydrolase;protein_id=WP_001182976.1;transl_table=11
NZ_PYKE01000153.1	RefSeq	gene	574	2007	.	+	.	ID=gene-C9F05_RS10890;Name=bglA;gbkey=Gene;gene=bglA;gene_biotype=protein_coding;locus_tag=C9F05_RS10890;old_locus_tag=C9F05_11175
NZ_PYKE01000153.1	Protein Homology	CDS	574	2007	.	+	0	ID=cds-WP_001230141.1;Parent=gene-C9F05_RS10890;Dbxref=GenBank:WP_001230141.1;Name=WP_001230141.1;gbkey=CDS;gene=bglA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461967.1;locus_tag=C9F05_RS10890;product=6-phospho-beta-glucosidase BglA;protein_id=WP_001230141.1;transl_table=11
NZ_PYKE01000153.1	RefSeq	gene	2055	2948	.	-	.	ID=gene-C9F05_RS10895;Name=C9F05_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10895;old_locus_tag=C9F05_11180
NZ_PYKE01000153.1	Protein Homology	CDS	2055	2948	.	-	0	ID=cds-WP_000819375.1;Parent=gene-C9F05_RS10895;Dbxref=GenBank:WP_000819375.1;Name=WP_000819375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461968.1;locus_tag=C9F05_RS10895;product=transporter;protein_id=WP_000819375.1;transl_table=11
##sequence-region NZ_PYKE01000335.1 1 2918
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000335.1	RefSeq	region	1	2918	.	+	.	ID=NZ_PYKE01000335.1:1..2918;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000335.1	RefSeq	gene	349	630	.	+	.	ID=gene-C9F05_RS22640;Name=C9F05_RS22640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22640;old_locus_tag=C9F05_23235
NZ_PYKE01000335.1	Protein Homology	CDS	349	630	.	+	0	ID=cds-WP_135370660.1;Parent=gene-C9F05_RS22640;Dbxref=GenBank:WP_135370660.1;Name=WP_135370660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463128.1;locus_tag=C9F05_RS22640;product=YjcB family protein;protein_id=WP_135370660.1;transl_table=11
NZ_PYKE01000335.1	RefSeq	gene	908	2918	.	-	.	ID=gene-C9F05_RS22645;Name=siiF;end_range=2918,.;gbkey=Gene;gene=siiF;gene_biotype=protein_coding;locus_tag=C9F05_RS22645;old_locus_tag=C9F05_23240;partial=true
NZ_PYKE01000335.1	Protein Homology	CDS	908	2918	.	-	1	ID=cds-WP_255121314.1;Parent=gene-C9F05_RS22645;Dbxref=GenBank:WP_255121314.1;Name=WP_255121314.1;end_range=2918,.;gbkey=CDS;gene=siiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463127.1;locus_tag=C9F05_RS22645;partial=true;product=SPI-4 type I secretion system protein SiiF;protein_id=WP_255121314.1;transl_table=11
##sequence-region NZ_PYKE01000062.1 1 26583
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000062.1	RefSeq	region	1	26583	.	+	.	ID=NZ_PYKE01000062.1:1..26583;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000062.1	RefSeq	gene	125	433	.	-	.	ID=gene-C9F05_RS03800;Name=C9F05_RS03800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03800;old_locus_tag=C9F05_03870
NZ_PYKE01000062.1	Protein Homology	CDS	125	433	.	-	0	ID=cds-WP_000975516.1;Parent=gene-C9F05_RS03800;Dbxref=GenBank:WP_000975516.1;Name=WP_000975516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460460.1;locus_tag=C9F05_RS03800;product=DUF1161 domain-containing protein;protein_id=WP_000975516.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	537	1247	.	+	.	ID=gene-C9F05_RS03805;Name=C9F05_RS03805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03805;old_locus_tag=C9F05_03875
NZ_PYKE01000062.1	Protein Homology	CDS	537	1247	.	+	0	ID=cds-WP_000743122.1;Parent=gene-C9F05_RS03805;Dbxref=GenBank:WP_000743122.1;Name=WP_000743122.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465701.1;locus_tag=C9F05_RS03805;product=YnfC family lipoprotein;protein_id=WP_000743122.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	1288	1848	.	-	.	ID=gene-C9F05_RS03810;Name=speG;gbkey=Gene;gene=speG;gene_biotype=protein_coding;locus_tag=C9F05_RS03810;old_locus_tag=C9F05_03880
NZ_PYKE01000062.1	Protein Homology	CDS	1288	1848	.	-	0	ID=cds-WP_000199997.1;Parent=gene-C9F05_RS03810;Dbxref=GenBank:WP_000199997.1;Name=WP_000199997.1;Ontology_term=GO:0008080;gbkey=CDS;gene=speG;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460462.1;locus_tag=C9F05_RS03810;product=spermidine N1-acetyltransferase;protein_id=WP_000199997.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	1884	2225	.	-	.	ID=gene-C9F05_RS03815;Name=C9F05_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03815;old_locus_tag=C9F05_03885
NZ_PYKE01000062.1	Protein Homology	CDS	1884	2225	.	-	0	ID=cds-WP_001066440.1;Parent=gene-C9F05_RS03815;Dbxref=GenBank:WP_001066440.1;Name=WP_001066440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460463.1;locus_tag=C9F05_RS03815;product=DUF1283 family protein;protein_id=WP_001066440.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	2377	2703	.	+	.	ID=gene-C9F05_RS03820;Name=C9F05_RS03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03820;old_locus_tag=C9F05_03890
NZ_PYKE01000062.1	Protein Homology	CDS	2377	2703	.	+	0	ID=cds-WP_000921382.1;Parent=gene-C9F05_RS03820;Dbxref=GenBank:WP_000921382.1;Name=WP_000921382.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460464.1;locus_tag=C9F05_RS03820;product=YnfA family protein;protein_id=WP_000921382.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	2825	4039	.	+	.	ID=gene-C9F05_RS03825;Name=rspA;gbkey=Gene;gene=rspA;gene_biotype=protein_coding;locus_tag=C9F05_RS03825;old_locus_tag=C9F05_03895
NZ_PYKE01000062.1	Protein Homology	CDS	2825	4039	.	+	0	ID=cds-WP_000706269.1;Parent=gene-C9F05_RS03825;Dbxref=GenBank:WP_000706269.1;Name=WP_000706269.1;gbkey=CDS;gene=rspA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001625315.1;locus_tag=C9F05_RS03825;product=starvation-sensing protein RspA;protein_id=WP_000706269.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	4050	5069	.	+	.	ID=gene-C9F05_RS03830;Name=C9F05_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03830;old_locus_tag=C9F05_03900
NZ_PYKE01000062.1	Protein Homology	CDS	4050	5069	.	+	0	ID=cds-WP_023206416.1;Parent=gene-C9F05_RS03830;Dbxref=GenBank:WP_023206416.1;Name=WP_023206416.1;Ontology_term=GO:0008270,GO:0016491;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460466.1;locus_tag=C9F05_RS03830;product=Zn-dependent oxidoreductase;protein_id=WP_023206416.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	5123	6502	.	+	.	ID=gene-C9F05_RS03835;Name=C9F05_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03835;old_locus_tag=C9F05_03905
NZ_PYKE01000062.1	Protein Homology	CDS	5123	6502	.	+	0	ID=cds-WP_135370042.1;Parent=gene-C9F05_RS03835;Dbxref=GenBank:WP_135370042.1;Name=WP_135370042.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012210164.1;locus_tag=C9F05_RS03835;product=MFS transporter;protein_id=WP_135370042.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	6646	8112	.	+	.	ID=gene-C9F05_RS03840;Name=C9F05_RS03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03840;old_locus_tag=C9F05_03910
NZ_PYKE01000062.1	Protein Homology	CDS	6646	8112	.	+	0	ID=cds-WP_135370043.1;Parent=gene-C9F05_RS03840;Dbxref=GenBank:WP_135370043.1;Name=WP_135370043.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460468.1;locus_tag=C9F05_RS03840;product=mannitol dehydrogenase family protein;protein_id=WP_135370043.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	8179	8382	.	-	.	ID=gene-C9F05_RS03845;Name=ydfZ;gbkey=Gene;gene=ydfZ;gene_biotype=protein_coding;locus_tag=C9F05_RS03845;old_locus_tag=C9F05_03915
NZ_PYKE01000062.1	Protein Homology	CDS	8179	8382	.	-	0	ID=cds-WP_000989267.1;Parent=gene-C9F05_RS03845;Dbxref=GenBank:WP_000989267.1;Name=WP_000989267.1;gbkey=CDS;gene=ydfZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460469.1;locus_tag=C9F05_RS03845;product=putative selenium delivery protein YdfZ;protein_id=WP_000989267.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	8563	9249	.	-	.	ID=gene-C9F05_RS03850;Name=C9F05_RS03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03850;old_locus_tag=C9F05_03920
NZ_PYKE01000062.1	Protein Homology	CDS	8563	9249	.	-	0	ID=cds-WP_000215563.1;Parent=gene-C9F05_RS03850;Dbxref=GenBank:WP_000215563.1;Name=WP_000215563.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460470.1;locus_tag=C9F05_RS03850;product=GntR family transcriptional regulator;protein_id=WP_000215563.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	9379	10125	.	-	.	ID=gene-C9F05_RS03855;Name=ydfG;gbkey=Gene;gene=ydfG;gene_biotype=protein_coding;locus_tag=C9F05_RS03855;old_locus_tag=C9F05_03925
NZ_PYKE01000062.1	Protein Homology	CDS	9379	10125	.	-	0	ID=cds-WP_000636564.1;Parent=gene-C9F05_RS03855;Dbxref=GenBank:WP_000636564.1;Name=WP_000636564.1;Ontology_term=GO:0016491;gbkey=CDS;gene=ydfG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460471.1;locus_tag=C9F05_RS03855;product=bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG;protein_id=WP_000636564.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	10264	12306	.	+	.	ID=gene-C9F05_RS03860;Name=dcp;gbkey=Gene;gene=dcp;gene_biotype=protein_coding;locus_tag=C9F05_RS03860;old_locus_tag=C9F05_03930
NZ_PYKE01000062.1	Protein Homology	CDS	10264	12306	.	+	0	ID=cds-WP_000106261.1;Parent=gene-C9F05_RS03860;Dbxref=GenBank:WP_000106261.1;Name=WP_000106261.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=dcp;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460472.1;locus_tag=C9F05_RS03860;product=peptidyl-dipeptidase Dcp;protein_id=WP_000106261.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	12650	12832	.	+	.	ID=gene-C9F05_RS03865;Name=C9F05_RS03865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03865;old_locus_tag=C9F05_03935
NZ_PYKE01000062.1	Protein Homology	CDS	12650	12832	.	+	0	ID=cds-WP_000807642.1;Parent=gene-C9F05_RS03865;Dbxref=GenBank:WP_000807642.1;Name=WP_000807642.1;Ontology_term=GO:0006950;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460473.1;locus_tag=C9F05_RS03865;product=general stress protein;protein_id=WP_000807642.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	12952	13479	.	-	.	ID=gene-C9F05_RS03870;Name=C9F05_RS03870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03870;old_locus_tag=C9F05_03940
NZ_PYKE01000062.1	Protein Homology	CDS	12952	13479	.	-	0	ID=cds-WP_001235357.1;Parent=gene-C9F05_RS03870;Dbxref=GenBank:WP_001235357.1;Name=WP_001235357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460474.1;locus_tag=C9F05_RS03870;product=2-oxo-tetronate isomerase;protein_id=WP_001235357.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	13862	14254	.	+	.	ID=gene-C9F05_RS03875;Name=C9F05_RS03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03875;old_locus_tag=C9F05_03945
NZ_PYKE01000062.1	Protein Homology	CDS	13862	14254	.	+	0	ID=cds-WP_000776351.1;Parent=gene-C9F05_RS03875;Dbxref=GenBank:WP_000776351.1;Name=WP_000776351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460475.1;locus_tag=C9F05_RS03875;product=YdeI family stress tolerance OB fold protein;protein_id=WP_000776351.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	14601	14696	.	-	.	ID=gene-C9F05_RS03885;Name=mgtS;gbkey=Gene;gene=mgtS;gene_biotype=protein_coding;locus_tag=C9F05_RS03885;old_locus_tag=C9F05_03955
NZ_PYKE01000062.1	Protein Homology	CDS	14601	14696	.	-	0	ID=cds-WP_000901531.1;Parent=gene-C9F05_RS03885;Dbxref=GenBank:WP_000901531.1;Name=WP_000901531.1;gbkey=CDS;gene=mgtS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165319.1;locus_tag=C9F05_RS03885;product=protein MgtS;protein_id=WP_000901531.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	14944	16131	.	-	.	ID=gene-C9F05_RS03890;Name=ydeE;gbkey=Gene;gene=ydeE;gene_biotype=protein_coding;locus_tag=C9F05_RS03890;old_locus_tag=C9F05_03960
NZ_PYKE01000062.1	Protein Homology	CDS	14944	16131	.	-	0	ID=cds-WP_001068056.1;Parent=gene-C9F05_RS03890;Dbxref=GenBank:WP_001068056.1;Name=WP_001068056.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=ydeE;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460476.1;locus_tag=C9F05_RS03890;product=efflux MFS transporter YdeE;protein_id=WP_001068056.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	16359	17261	.	+	.	ID=gene-C9F05_RS03895;Name=eamA;gbkey=Gene;gene=eamA;gene_biotype=protein_coding;locus_tag=C9F05_RS03895;old_locus_tag=C9F05_03965
NZ_PYKE01000062.1	Protein Homology	CDS	16359	17261	.	+	0	ID=cds-WP_135370044.1;Parent=gene-C9F05_RS03895;Dbxref=GenBank:WP_135370044.1;Name=WP_135370044.1;Ontology_term=GO:0016020;gbkey=CDS;gene=eamA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460477.1;locus_tag=C9F05_RS03895;product=O-acetylserine/cysteine exporter;protein_id=WP_135370044.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	17380	17595	.	-	.	ID=gene-C9F05_RS03900;Name=marB;gbkey=Gene;gene=marB;gene_biotype=protein_coding;locus_tag=C9F05_RS03900;old_locus_tag=C9F05_03970
NZ_PYKE01000062.1	Protein Homology	CDS	17380	17595	.	-	0	ID=cds-WP_000783049.1;Parent=gene-C9F05_RS03900;Dbxref=GenBank:WP_000783049.1;Name=WP_000783049.1;gbkey=CDS;gene=marB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460478.1;locus_tag=C9F05_RS03900;product=multiple antibiotic resistance protein MarB;protein_id=WP_000783049.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	17624	18007	.	-	.	ID=gene-C9F05_RS03905;Name=marA;gbkey=Gene;gene=marA;gene_biotype=protein_coding;locus_tag=C9F05_RS03905;old_locus_tag=C9F05_03975
NZ_PYKE01000062.1	Protein Homology	CDS	17624	18007	.	-	0	ID=cds-WP_000091194.1;Parent=gene-C9F05_RS03905;Dbxref=GenBank:WP_000091194.1;Name=WP_000091194.1;gbkey=CDS;gene=marA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000091194.1;locus_tag=C9F05_RS03905;product=MDR efflux pump AcrAB transcriptional activator MarA;protein_id=WP_000091194.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	18027	18461	.	-	.	ID=gene-C9F05_RS03910;Name=marR;gbkey=Gene;gene=marR;gene_biotype=protein_coding;locus_tag=C9F05_RS03910;old_locus_tag=C9F05_03980
NZ_PYKE01000062.1	Protein Homology	CDS	18027	18461	.	-	0	ID=cds-WP_000843434.1;Parent=gene-C9F05_RS03910;Dbxref=GenBank:WP_000843434.1;Name=WP_000843434.1;gbkey=CDS;gene=marR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460480.1;locus_tag=C9F05_RS03910;product=multiple antibiotic resistance transcriptional regulator MarR;protein_id=WP_000843434.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	18720	19385	.	+	.	ID=gene-C9F05_RS03915;Name=C9F05_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03915;old_locus_tag=C9F05_03985
NZ_PYKE01000062.1	Protein Homology	CDS	18720	19385	.	+	0	ID=cds-WP_000968968.1;Parent=gene-C9F05_RS03915;Dbxref=GenBank:WP_000968968.1;Name=WP_000968968.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460481.1;locus_tag=C9F05_RS03915;product=MarC family NAAT transporter;protein_id=WP_000968968.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	19432	20622	.	-	.	ID=gene-C9F05_RS03920;Name=C9F05_RS03920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03920;old_locus_tag=C9F05_03990
NZ_PYKE01000062.1	Protein Homology	CDS	19432	20622	.	-	0	ID=cds-WP_085375785.1;Parent=gene-C9F05_RS03920;Dbxref=GenBank:WP_085375785.1;Name=WP_085375785.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460482.1;locus_tag=C9F05_RS03920;product=sugar transporter;protein_id=WP_085375785.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	20738	21610	.	-	.	ID=gene-C9F05_RS03930;Name=ptrR;gbkey=Gene;gene=ptrR;gene_biotype=protein_coding;locus_tag=C9F05_RS03930;old_locus_tag=C9F05_04000
NZ_PYKE01000062.1	Protein Homology	CDS	20738	21610	.	-	0	ID=cds-WP_135370045.1;Parent=gene-C9F05_RS03930;Dbxref=GenBank:WP_135370045.1;Name=WP_135370045.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ptrR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460483.1;locus_tag=C9F05_RS03930;product=putrescine utilization regulator PtrR;protein_id=WP_135370045.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	21713	23101	.	+	.	ID=gene-C9F05_RS03935;Name=sad;gbkey=Gene;gene=sad;gene_biotype=protein_coding;locus_tag=C9F05_RS03935;old_locus_tag=C9F05_04005
NZ_PYKE01000062.1	Protein Homology	CDS	21713	23101	.	+	0	ID=cds-WP_000178409.1;Parent=gene-C9F05_RS03935;Dbxref=GenBank:WP_000178409.1;Name=WP_000178409.1;Ontology_term=GO:0004030;gbkey=CDS;gene=sad;go_function=aldehyde dehydrogenase [NAD(P)+] activity|0004030||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460484.1;locus_tag=C9F05_RS03935;product=succinate-semialdehyde dehydrogenase;protein_id=WP_000178409.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	23174	24100	.	+	.	ID=gene-C9F05_RS03940;Name=glsB;gbkey=Gene;gene=glsB;gene_biotype=protein_coding;locus_tag=C9F05_RS03940;old_locus_tag=C9F05_04010
NZ_PYKE01000062.1	Protein Homology	CDS	23174	24100	.	+	0	ID=cds-WP_135370046.1;Parent=gene-C9F05_RS03940;Dbxref=GenBank:WP_135370046.1;Name=WP_135370046.1;Ontology_term=GO:0006541,GO:0004359;gbkey=CDS;gene=glsB;go_function=glutaminase activity|0004359||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460485.1;locus_tag=C9F05_RS03940;product=glutaminase B;protein_id=WP_135370046.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	24100	24459	.	+	.	ID=gene-C9F05_RS03945;Name=C9F05_RS03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03945;old_locus_tag=C9F05_04015
NZ_PYKE01000062.1	Protein Homology	CDS	24100	24459	.	+	0	ID=cds-WP_000992451.1;Parent=gene-C9F05_RS03945;Dbxref=GenBank:WP_000992451.1;Name=WP_000992451.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460486.1;locus_tag=C9F05_RS03945;product=DUF4186 domain-containing protein;protein_id=WP_000992451.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	24714	25628	.	+	.	ID=gene-C9F05_RS03950;Name=C9F05_RS03950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03950;old_locus_tag=C9F05_04020
NZ_PYKE01000062.1	Protein Homology	CDS	24714	25628	.	+	0	ID=cds-WP_001670736.1;Parent=gene-C9F05_RS03950;Dbxref=GenBank:WP_001670736.1;Name=WP_001670736.1;Ontology_term=GO:0005254;gbkey=CDS;go_function=chloride channel activity|0005254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416037.2;locus_tag=C9F05_RS03950;product=bestrophin family protein;protein_id=WP_001670736.1;transl_table=11
NZ_PYKE01000062.1	RefSeq	gene	25684	26226	.	-	.	ID=gene-C9F05_RS03955;Name=C9F05_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03955;old_locus_tag=C9F05_04025
NZ_PYKE01000062.1	Protein Homology	CDS	25684	26226	.	-	0	ID=cds-WP_023244063.1;Parent=gene-C9F05_RS03955;Dbxref=GenBank:WP_023244063.1;Name=WP_023244063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460488.1;locus_tag=C9F05_RS03955;product=YybH family protein;protein_id=WP_023244063.1;transl_table=11
##sequence-region NZ_PYKE01000011.1 1 2783
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000011.1	RefSeq	region	1	2783	.	+	.	ID=NZ_PYKE01000011.1:1..2783;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000011.1	RefSeq	gene	155	1666	.	-	.	ID=gene-C9F05_RS00605;Name=mobQ;gbkey=Gene;gene=mobQ;gene_biotype=protein_coding;locus_tag=C9F05_RS00605;old_locus_tag=C9F05_00620
NZ_PYKE01000011.1	Protein Homology	CDS	155	1666	.	-	0	ID=cds-WP_135369927.1;Parent=gene-C9F05_RS00605;Dbxref=GenBank:WP_135369927.1;Name=WP_135369927.1;gbkey=CDS;gene=mobQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001415040.1;locus_tag=C9F05_RS00605;product=MobQ family relaxase;protein_id=WP_135369927.1;transl_table=11
NZ_PYKE01000011.1	RefSeq	gene	2305	2610	.	+	.	ID=gene-C9F05_RS00610;Name=C9F05_RS00610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00610;old_locus_tag=C9F05_00625
NZ_PYKE01000011.1	Protein Homology	CDS	2305	2610	.	+	0	ID=cds-WP_135369928.1;Parent=gene-C9F05_RS00610;Dbxref=GenBank:WP_135369928.1;Name=WP_135369928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000368354.1;locus_tag=C9F05_RS00610;product=conjugal transfer protein TraD;protein_id=WP_135369928.1;transl_table=11
##sequence-region NZ_PYKE01000010.1 1 25919
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000010.1	RefSeq	region	1	25919	.	+	.	ID=NZ_PYKE01000010.1:1..25919;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000010.1	RefSeq	gene	1	2450	.	+	.	ID=gene-C9F05_RS00475;Name=fdnG;gbkey=Gene;gene=fdnG;gene_biotype=protein_coding;locus_tag=C9F05_RS00475;old_locus_tag=C9F05_00490;partial=true;start_range=.,1
NZ_PYKE01000010.1	Protein Homology	CDS	1	2450	.	+	2	ID=cds-WP_135369919.1;Parent=gene-C9F05_RS00475;Dbxref=GenBank:WP_135369919.1;Name=WP_135369919.1;Ontology_term=GO:0015942,GO:0008863,GO:0009055,GO:0043546,GO:0047111,GO:0009326;gbkey=CDS;gene=fdnG;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,electron transfer activity|0009055||IEA,molybdopterin cofactor binding|0043546||IEA,formate dehydrogenase (cytochrome-c-553) activity|0047111||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460529.1;locus_tag=C9F05_RS00475;partial=true;product=formate dehydrogenase-N subunit alpha;protein_id=WP_135369919.1;start_range=.,1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	2464	3348	.	+	.	ID=gene-C9F05_RS00480;Name=fdxH;gbkey=Gene;gene=fdxH;gene_biotype=protein_coding;locus_tag=C9F05_RS00480;old_locus_tag=C9F05_00495
NZ_PYKE01000010.1	Protein Homology	CDS	2464	3348	.	+	0	ID=cds-WP_135369920.1;Parent=gene-C9F05_RS00480;Dbxref=GenBank:WP_135369920.1;Name=WP_135369920.1;Ontology_term=GO:0015944,GO:0008863,GO:0051539,GO:0016020;gbkey=CDS;gene=fdxH;go_component=membrane|0016020||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=formate oxidation|0015944||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460528.1;locus_tag=C9F05_RS00480;product=formate dehydrogenase subunit beta;protein_id=WP_135369920.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	3341	3997	.	+	.	ID=gene-C9F05_RS00485;Name=fdnI;gbkey=Gene;gene=fdnI;gene_biotype=protein_coding;locus_tag=C9F05_RS00485;old_locus_tag=C9F05_00500
NZ_PYKE01000010.1	Protein Homology	CDS	3341	3997	.	+	0	ID=cds-WP_000045657.1;Parent=gene-C9F05_RS00485;Dbxref=GenBank:WP_000045657.1;Name=WP_000045657.1;gbkey=CDS;gene=fdnI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460527.1;locus_tag=C9F05_RS00485;product=formate dehydrogenase-N subunit gamma;protein_id=WP_000045657.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	4091	5101	.	-	.	ID=gene-C9F05_RS00490;Name=adhP;gbkey=Gene;gene=adhP;gene_biotype=protein_coding;locus_tag=C9F05_RS00490;old_locus_tag=C9F05_00505
NZ_PYKE01000010.1	Protein Homology	CDS	4091	5101	.	-	0	ID=cds-WP_000642447.1;Parent=gene-C9F05_RS00490;Dbxref=GenBank:WP_000642447.1;Name=WP_000642447.1;gbkey=CDS;gene=adhP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460526.1;locus_tag=C9F05_RS00490;product=alcohol dehydrogenase AdhP;protein_id=WP_000642447.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	5383	7080	.	-	.	ID=gene-C9F05_RS00495;Name=C9F05_RS00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00495;old_locus_tag=C9F05_00510
NZ_PYKE01000010.1	Protein Homology	CDS	5383	7080	.	-	0	ID=cds-WP_000450511.1;Parent=gene-C9F05_RS00495;Dbxref=GenBank:WP_000450511.1;Name=WP_000450511.1;Ontology_term=GO:0004470,GO:0004471,GO:0046872,GO:0051287;gbkey=CDS;go_function=malic enzyme activity|0004470||IEA,malate dehydrogenase (decarboxylating) (NAD+) activity|0004471||IEA,metal ion binding|0046872||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460525.1;locus_tag=C9F05_RS00495;product=NAD-dependent malic enzyme;protein_id=WP_000450511.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	7257	7400	.	-	.	ID=gene-C9F05_RS00500;Name=sra;gbkey=Gene;gene=sra;gene_biotype=protein_coding;locus_tag=C9F05_RS00500;old_locus_tag=C9F05_00515
NZ_PYKE01000010.1	Protein Homology	CDS	7257	7400	.	-	0	ID=cds-WP_000841559.1;Parent=gene-C9F05_RS00500;Dbxref=GenBank:WP_000841559.1;Name=WP_000841559.1;gbkey=CDS;gene=sra;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460524.1;locus_tag=C9F05_RS00500;product=stationary-phase-induced ribosome-associated protein;protein_id=WP_000841559.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	7495	7710	.	-	.	ID=gene-C9F05_RS00505;Name=bdm;gbkey=Gene;gene=bdm;gene_biotype=protein_coding;locus_tag=C9F05_RS00505;old_locus_tag=C9F05_00520
NZ_PYKE01000010.1	Protein Homology	CDS	7495	7710	.	-	0	ID=cds-WP_000495700.1;Parent=gene-C9F05_RS00505;Dbxref=GenBank:WP_000495700.1;Name=WP_000495700.1;gbkey=CDS;gene=bdm;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460523.1;locus_tag=C9F05_RS00505;product=biofilm-dependent modulation protein;protein_id=WP_000495700.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	8223	8654	.	+	.	ID=gene-C9F05_RS00510;Name=C9F05_RS00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00510;old_locus_tag=C9F05_00525
NZ_PYKE01000010.1	Protein Homology	CDS	8223	8654	.	+	0	ID=cds-WP_000152297.1;Parent=gene-C9F05_RS00510;Dbxref=GenBank:WP_000152297.1;Name=WP_000152297.1;Ontology_term=GO:0006972,GO:0006979,GO:0033194,GO:0004601,GO:0051920,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=peroxidase activity|0004601||IEA,peroxiredoxin activity|0051920||IEA;go_process=hyperosmotic response|0006972||IEA,response to oxidative stress|0006979||IEA,response to hydroperoxide|0033194||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460522.1;locus_tag=C9F05_RS00510;product=OsmC family protein;protein_id=WP_000152297.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	9004	9333	.	+	.	ID=gene-C9F05_RS00515;Name=hdeB;gbkey=Gene;gene=hdeB;gene_biotype=protein_coding;locus_tag=C9F05_RS00515;old_locus_tag=C9F05_00530
NZ_PYKE01000010.1	Protein Homology	CDS	9004	9333	.	+	0	ID=cds-WP_001032161.1;Parent=gene-C9F05_RS00515;Dbxref=GenBank:WP_001032161.1;Name=WP_001032161.1;gbkey=CDS;gene=hdeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460521.1;locus_tag=C9F05_RS00515;product=acid-activated periplasmic chaperone HdeB;protein_id=WP_001032161.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	9476	10261	.	+	.	ID=gene-C9F05_RS00520;Name=C9F05_RS00520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00520;old_locus_tag=C9F05_00535
NZ_PYKE01000010.1	Protein Homology	CDS	9476	10261	.	+	0	ID=cds-WP_000698599.1;Parent=gene-C9F05_RS00520;Dbxref=GenBank:WP_000698599.1;Name=WP_000698599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460520.1;locus_tag=C9F05_RS00520;product=OBAP family protein;protein_id=WP_000698599.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	10390	12174	.	+	.	ID=gene-C9F05_RS00525;Name=treZ;gbkey=Gene;gene=treZ;gene_biotype=protein_coding;locus_tag=C9F05_RS00525;old_locus_tag=C9F05_00540
NZ_PYKE01000010.1	Protein Homology	CDS	10390	12174	.	+	0	ID=cds-WP_000095541.1;Parent=gene-C9F05_RS00525;Dbxref=GenBank:WP_000095541.1;Name=WP_000095541.1;Ontology_term=GO:0005992,GO:0033942;gbkey=CDS;gene=treZ;go_function=4-alpha-D-(1->4)-alpha-D-glucanotrehalose trehalohydrolase activity|0033942||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460519.1;locus_tag=C9F05_RS00525;product=malto-oligosyltrehalose trehalohydrolase;protein_id=WP_000095541.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	12171	14699	.	+	.	ID=gene-C9F05_RS00530;Name=treY;gbkey=Gene;gene=treY;gene_biotype=protein_coding;locus_tag=C9F05_RS00530;old_locus_tag=C9F05_00545
NZ_PYKE01000010.1	Protein Homology	CDS	12171	14699	.	+	0	ID=cds-WP_135369921.1;Parent=gene-C9F05_RS00530;Dbxref=GenBank:WP_135369921.1;Name=WP_135369921.1;Ontology_term=GO:0005992,GO:0047470;gbkey=CDS;gene=treY;go_function=(1%2C4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity|0047470||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460518.1;locus_tag=C9F05_RS00530;product=malto-oligosyltrehalose synthase;protein_id=WP_135369921.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	14756	16831	.	+	.	ID=gene-C9F05_RS00535;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=C9F05_RS00535;old_locus_tag=C9F05_00550
NZ_PYKE01000010.1	Protein Homology	CDS	14756	16831	.	+	0	ID=cds-WP_135369922.1;Parent=gene-C9F05_RS00535;Dbxref=GenBank:WP_135369922.1;Name=WP_135369922.1;Ontology_term=GO:0005980,GO:0120549;gbkey=CDS;gene=glgX;go_function=limit dextrin alpha-1%2C6-maltotetraose-hydrolase activity|0120549||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460517.1;locus_tag=C9F05_RS00535;product=glycogen debranching protein GlgX;protein_id=WP_135369922.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	16945	18147	.	-	.	ID=gene-C9F05_RS00540;Name=C9F05_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00540;old_locus_tag=C9F05_00555
NZ_PYKE01000010.1	Protein Homology	CDS	16945	18147	.	-	0	ID=cds-WP_135369923.1;Parent=gene-C9F05_RS00540;Dbxref=GenBank:WP_135369923.1;Name=WP_135369923.1;Ontology_term=GO:0009086,GO:0030170,GO:0047804;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine-S-conjugate beta-lyase activity|0047804||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460516.1;locus_tag=C9F05_RS00540;product=MalY/PatB family protein;protein_id=WP_135369923.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	pseudogene	18160	18231	.	-	.	ID=gene-C9F05_RS24090;Name=C9F05_RS24090;end_range=18231,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24090;partial=true;pseudo=true
NZ_PYKE01000010.1	Protein Homology	CDS	18160	18231	.	-	0	ID=cds-C9F05_RS24090;Parent=gene-C9F05_RS24090;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=18231,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460515.1;locus_tag=C9F05_RS24090;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	18418	19398	.	-	.	ID=gene-C9F05_RS00545;Name=C9F05_RS00545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00545;old_locus_tag=C9F05_00560
NZ_PYKE01000010.1	Protein Homology	CDS	18418	19398	.	-	0	ID=cds-WP_135369924.1;Parent=gene-C9F05_RS00545;Dbxref=GenBank:WP_135369924.1;Name=WP_135369924.1;Ontology_term=GO:0004497,GO:0010181,GO:0016703;gbkey=CDS;go_function=monooxygenase activity|0004497||IEA,FMN binding|0010181||IEA,oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)|0016703||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441349.1;locus_tag=C9F05_RS00545;product=NAD(P)H-dependent flavin oxidoreductase;protein_id=WP_135369924.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	19572	20480	.	-	.	ID=gene-C9F05_RS00550;Name=C9F05_RS00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00550;old_locus_tag=C9F05_00565
NZ_PYKE01000010.1	Protein Homology	CDS	19572	20480	.	-	0	ID=cds-WP_023994284.1;Parent=gene-C9F05_RS00550;Dbxref=GenBank:WP_023994284.1;Name=WP_023994284.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001176636.1;locus_tag=C9F05_RS00550;product=LysR family transcriptional regulator;protein_id=WP_023994284.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	pseudogene	20881	21085	.	+	.	ID=gene-C9F05_RS23990;Name=C9F05_RS23990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23990;old_locus_tag=C9F05_00570;pseudo=true
NZ_PYKE01000010.1	Protein Homology	CDS	20881	21085	.	+	0	ID=cds-C9F05_RS23990;Parent=gene-C9F05_RS23990;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001276020.1;locus_tag=C9F05_RS23990;product=DUF29 family protein;pseudo=true;transl_table=11
NZ_PYKE01000010.1	RefSeq	pseudogene	21425	22214	.	+	.	ID=gene-C9F05_RS00565;Name=C9F05_RS00565;end_range=22214,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS00565;old_locus_tag=C9F05_00580;partial=true;pseudo=true
NZ_PYKE01000010.1	Protein Homology	CDS	21425	22214	.	+	0	ID=cds-C9F05_RS00565;Parent=gene-C9F05_RS00565;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=22214,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001567368.1;locus_tag=C9F05_RS00565;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	22216	23124	.	-	.	ID=gene-C9F05_RS00570;Name=C9F05_RS00570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00570;old_locus_tag=C9F05_00585
NZ_PYKE01000010.1	Protein Homology	CDS	22216	23124	.	-	0	ID=cds-WP_077912641.1;Parent=gene-C9F05_RS00570;Dbxref=GenBank:WP_077912641.1;Name=WP_077912641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460512.1;locus_tag=C9F05_RS00570;product=hypothetical protein;protein_id=WP_077912641.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	23275	23607	.	-	.	ID=gene-C9F05_RS00575;Name=C9F05_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00575;old_locus_tag=C9F05_00590
NZ_PYKE01000010.1	Protein Homology	CDS	23275	23607	.	-	0	ID=cds-WP_000253154.1;Parent=gene-C9F05_RS00575;Dbxref=GenBank:WP_000253154.1;Name=WP_000253154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000253166.1;locus_tag=C9F05_RS00575;product=DUF1493 family protein;protein_id=WP_000253154.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	pseudogene	23601	23699	.	-	.	ID=gene-C9F05_RS23995;Name=C9F05_RS23995;end_range=23699,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23995;partial=true;pseudo=true
NZ_PYKE01000010.1	Protein Homology	CDS	23601	23699	.	-	0	ID=cds-C9F05_RS23995;Parent=gene-C9F05_RS23995;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=23699,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_090138499.1;locus_tag=C9F05_RS23995;partial=true;product=STM2901 family protein;pseudo=true;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	23964	24212	.	+	.	ID=gene-C9F05_RS00585;Name=C9F05_RS00585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00585;old_locus_tag=C9F05_00600
NZ_PYKE01000010.1	Protein Homology	CDS	23964	24212	.	+	0	ID=cds-WP_000885424.1;Parent=gene-C9F05_RS00585;Dbxref=GenBank:WP_000885424.1;Name=WP_000885424.1;Ontology_term=GO:0006355,GO:0045927,GO:0003677,GO:0097351,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=DNA binding|0003677||IEA,toxin sequestering activity|0097351||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,positive regulation of growth|0045927||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460511.1;locus_tag=C9F05_RS00585;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_000885424.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	24202	24486	.	+	.	ID=gene-C9F05_RS00590;Name=C9F05_RS00590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00590;old_locus_tag=C9F05_00605
NZ_PYKE01000010.1	Protein Homology	CDS	24202	24486	.	+	0	ID=cds-WP_000221343.1;Parent=gene-C9F05_RS00590;Dbxref=GenBank:WP_000221343.1;Name=WP_000221343.1;Ontology_term=GO:0017148,GO:0004521,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=RNA endonuclease activity|0004521||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460510.1;locus_tag=C9F05_RS00590;product=type II toxin-antitoxin system RelE family toxin;protein_id=WP_000221343.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	24657	25046	.	+	.	ID=gene-C9F05_RS00595;Name=C9F05_RS00595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00595;old_locus_tag=C9F05_00610
NZ_PYKE01000010.1	Protein Homology	CDS	24657	25046	.	+	0	ID=cds-WP_000194089.1;Parent=gene-C9F05_RS00595;Dbxref=GenBank:WP_000194089.1;Name=WP_000194089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460509.1;locus_tag=C9F05_RS00595;product=RidA family protein;protein_id=WP_000194089.1;transl_table=11
NZ_PYKE01000010.1	RefSeq	gene	25094	25919	.	-	.	ID=gene-C9F05_RS00600;Name=C9F05_RS00600;end_range=25919,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00600;old_locus_tag=C9F05_00615;partial=true
NZ_PYKE01000010.1	Protein Homology	CDS	25094	25919	.	-	1	ID=cds-WP_135369925.1;Parent=gene-C9F05_RS00600;Dbxref=GenBank:WP_135369925.1;Name=WP_135369925.1;Ontology_term=GO:0016740,GO:0016853;end_range=25919,.;gbkey=CDS;go_function=transferase activity|0016740||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000954687.1;locus_tag=C9F05_RS00600;partial=true;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=WP_135369925.1;transl_table=11
##sequence-region NZ_PYKE01000028.1 1 68544
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000028.1	RefSeq	region	1	68544	.	+	.	ID=NZ_PYKE01000028.1:1..68544;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000028.1	RefSeq	gene	202	948	.	-	.	ID=gene-C9F05_RS01435;Name=dsbG;gbkey=Gene;gene=dsbG;gene_biotype=protein_coding;locus_tag=C9F05_RS01435;old_locus_tag=C9F05_01460
NZ_PYKE01000028.1	Protein Homology	CDS	202	948	.	-	0	ID=cds-WP_000597122.1;Parent=gene-C9F05_RS01435;Dbxref=GenBank:WP_000597122.1;Name=WP_000597122.1;gbkey=CDS;gene=dsbG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459599.1;locus_tag=C9F05_RS01435;product=thiol:disulfide interchange protein DsbG;protein_id=WP_000597122.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	1389	1952	.	+	.	ID=gene-C9F05_RS01440;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=C9F05_RS01440;old_locus_tag=C9F05_01465
NZ_PYKE01000028.1	Protein Homology	CDS	1389	1952	.	+	0	ID=cds-WP_000052802.1;Parent=gene-C9F05_RS01440;Dbxref=GenBank:WP_000052802.1;Name=WP_000052802.1;Ontology_term=GO:0006979,GO:0102039;gbkey=CDS;gene=ahpC;go_function=NADH-dependent peroxiredoxin activity|0102039||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003858764.1;locus_tag=C9F05_RS01440;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_000052802.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	2194	3759	.	+	.	ID=gene-C9F05_RS01445;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=C9F05_RS01445;old_locus_tag=C9F05_01470
NZ_PYKE01000028.1	Protein Homology	CDS	2194	3759	.	+	0	ID=cds-WP_000887644.1;Parent=gene-C9F05_RS01445;Dbxref=GenBank:WP_000887644.1;Name=WP_000887644.1;Ontology_term=GO:0000302,GO:0008785,GO:0050660,GO:0051287;gbkey=CDS;gene=ahpF;go_function=alkyl hydroperoxide reductase activity|0008785||IEA,flavin adenine dinucleotide binding|0050660||IEA,NAD binding|0051287||IEA;go_process=response to reactive oxygen species|0000302||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459601.1;locus_tag=C9F05_RS01445;product=alkyl hydroperoxide reductase subunit F;protein_id=WP_000887644.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	4092	4652	.	+	.	ID=gene-C9F05_RS01450;Name=C9F05_RS01450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01450;old_locus_tag=C9F05_01475
NZ_PYKE01000028.1	Protein Homology	CDS	4092	4652	.	+	0	ID=cds-WP_000377444.1;Parent=gene-C9F05_RS01450;Dbxref=GenBank:WP_000377444.1;Name=WP_000377444.1;Ontology_term=GO:0006457;gbkey=CDS;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459602.1;locus_tag=C9F05_RS01450;product=TorD/DmsD family molecular chaperone;protein_id=WP_000377444.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	4645	6924	.	+	.	ID=gene-C9F05_RS01455;Name=C9F05_RS01455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01455;old_locus_tag=C9F05_01480
NZ_PYKE01000028.1	Protein Homology	CDS	4645	6924	.	+	0	ID=cds-WP_135369954.1;Parent=gene-C9F05_RS01455;Dbxref=GenBank:WP_135369954.1;Name=WP_135369954.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459603.1;locus_tag=C9F05_RS01455;product=molybdopterin-dependent oxidoreductase;protein_id=WP_135369954.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	6921	7478	.	+	.	ID=gene-C9F05_RS01460;Name=C9F05_RS01460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01460;old_locus_tag=C9F05_01485
NZ_PYKE01000028.1	Protein Homology	CDS	6921	7478	.	+	0	ID=cds-WP_001250381.1;Parent=gene-C9F05_RS01460;Dbxref=GenBank:WP_001250381.1;Name=WP_001250381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459604.1;locus_tag=C9F05_RS01460;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_001250381.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	7478	8245	.	+	.	ID=gene-C9F05_RS01465;Name=C9F05_RS01465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01465;old_locus_tag=C9F05_01490
NZ_PYKE01000028.1	Protein Homology	CDS	7478	8245	.	+	0	ID=cds-WP_135369955.1;Parent=gene-C9F05_RS01465;Dbxref=GenBank:WP_135369955.1;Name=WP_135369955.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459605.1;locus_tag=C9F05_RS01465;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_135369955.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	8313	8741	.	-	.	ID=gene-C9F05_RS01470;Name=uspG;gbkey=Gene;gene=uspG;gene_biotype=protein_coding;locus_tag=C9F05_RS01470;old_locus_tag=C9F05_01495
NZ_PYKE01000028.1	Protein Homology	CDS	8313	8741	.	-	0	ID=cds-WP_000278499.1;Parent=gene-C9F05_RS01470;Dbxref=GenBank:WP_000278499.1;Name=WP_000278499.1;gbkey=CDS;gene=uspG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459606.1;locus_tag=C9F05_RS01470;product=universal stress protein UspG;protein_id=WP_000278499.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	8964	10202	.	+	.	ID=gene-C9F05_RS01475;Name=C9F05_RS01475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01475;old_locus_tag=C9F05_01500
NZ_PYKE01000028.1	Protein Homology	CDS	8964	10202	.	+	0	ID=cds-WP_135369956.1;Parent=gene-C9F05_RS01475;Dbxref=GenBank:WP_135369956.1;Name=WP_135369956.1;Ontology_term=GO:0008270,GO:0016616,GO:0030554;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459607.1;locus_tag=C9F05_RS01475;product=zinc-dependent alcohol dehydrogenase;protein_id=WP_135369956.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	10285	10695	.	-	.	ID=gene-C9F05_RS01480;Name=rnk;gbkey=Gene;gene=rnk;gene_biotype=protein_coding;locus_tag=C9F05_RS01480;old_locus_tag=C9F05_01505
NZ_PYKE01000028.1	Protein Homology	CDS	10285	10695	.	-	0	ID=cds-WP_000089748.1;Parent=gene-C9F05_RS01480;Dbxref=GenBank:WP_000089748.1;Name=WP_000089748.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=rnk;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459608.1;locus_tag=C9F05_RS01480;product=nucleoside diphosphate kinase regulator;protein_id=WP_000089748.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	10930	11736	.	-	.	ID=gene-C9F05_RS01485;Name=rna;gbkey=Gene;gene=rna;gene_biotype=protein_coding;locus_tag=C9F05_RS01485;old_locus_tag=C9F05_01515
NZ_PYKE01000028.1	Protein Homology	CDS	10930	11736	.	-	0	ID=cds-WP_135369957.1;Parent=gene-C9F05_RS01485;Dbxref=GenBank:WP_135369957.1;Name=WP_135369957.1;gbkey=CDS;gene=rna;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459609.1;locus_tag=C9F05_RS01485;product=ribonuclease I;protein_id=WP_135369957.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	11846	13309	.	-	.	ID=gene-C9F05_RS01490;Name=citT;gbkey=Gene;gene=citT;gene_biotype=protein_coding;locus_tag=C9F05_RS01490;old_locus_tag=C9F05_01520
NZ_PYKE01000028.1	Protein Homology	CDS	11846	13309	.	-	0	ID=cds-WP_000059029.1;Parent=gene-C9F05_RS01490;Dbxref=GenBank:WP_000059029.1;Name=WP_000059029.1;gbkey=CDS;gene=citT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459610.1;locus_tag=C9F05_RS01490;product=citrate/succinate antiporter CitT;protein_id=WP_000059029.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	13347	14243	.	-	.	ID=gene-C9F05_RS01495;Name=citG;gbkey=Gene;gene=citG;gene_biotype=protein_coding;locus_tag=C9F05_RS01495;old_locus_tag=C9F05_01525
NZ_PYKE01000028.1	Protein Homology	CDS	13347	14243	.	-	0	ID=cds-WP_000982655.1;Parent=gene-C9F05_RS01495;Dbxref=GenBank:WP_000982655.1;Name=WP_000982655.1;gbkey=CDS;gene=citG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459611.1;locus_tag=C9F05_RS01495;product=triphosphoribosyl-dephospho-CoA synthase CitG;protein_id=WP_000982655.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	14215	14766	.	-	.	ID=gene-C9F05_RS01500;Name=citX;gbkey=Gene;gene=citX;gene_biotype=protein_coding;locus_tag=C9F05_RS01500;old_locus_tag=C9F05_01530
NZ_PYKE01000028.1	Protein Homology	CDS	14215	14766	.	-	0	ID=cds-WP_135369958.1;Parent=gene-C9F05_RS01500;Dbxref=GenBank:WP_135369958.1;Name=WP_135369958.1;Ontology_term=GO:0051191,GO:0050519;gbkey=CDS;gene=citX;go_function=holo-citrate lyase synthase activity|0050519||IEA;go_process=prosthetic group biosynthetic process|0051191||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459612.1;locus_tag=C9F05_RS01500;product=citrate lyase holo-[acyl-carrier protein] synthase;protein_id=WP_135369958.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	14770	16299	.	-	.	ID=gene-C9F05_RS01505;Name=citF;gbkey=Gene;gene=citF;gene_biotype=protein_coding;locus_tag=C9F05_RS01505;old_locus_tag=C9F05_01535
NZ_PYKE01000028.1	Protein Homology	CDS	14770	16299	.	-	0	ID=cds-WP_023258281.1;Parent=gene-C9F05_RS01505;Dbxref=GenBank:WP_023258281.1;Name=WP_023258281.1;Ontology_term=GO:0006113,GO:0008814,GO:0008815,GO:0009346;gbkey=CDS;gene=citF;go_component=ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate CoA-transferase activity|0008814||IEA,citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459613.1;locus_tag=C9F05_RS01505;product=citrate lyase subunit alpha;protein_id=WP_023258281.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	16309	17217	.	-	.	ID=gene-C9F05_RS01510;Name=citE;gbkey=Gene;gene=citE;gene_biotype=protein_coding;locus_tag=C9F05_RS01510;old_locus_tag=C9F05_01540
NZ_PYKE01000028.1	Protein Homology	CDS	16309	17217	.	-	0	ID=cds-WP_000622342.1;Parent=gene-C9F05_RS01510;Dbxref=GenBank:WP_000622342.1;Name=WP_000622342.1;Ontology_term=GO:0006084,GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citE;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=acetyl-CoA metabolic process|0006084||IEA,fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459614.1;locus_tag=C9F05_RS01510;product=citrate (pro-3S)-lyase subunit beta;protein_id=WP_000622342.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	17214	17510	.	-	.	ID=gene-C9F05_RS01515;Name=citD;gbkey=Gene;gene=citD;gene_biotype=protein_coding;locus_tag=C9F05_RS01515;old_locus_tag=C9F05_01545
NZ_PYKE01000028.1	Protein Homology	CDS	17214	17510	.	-	0	ID=cds-WP_000700679.1;Parent=gene-C9F05_RS01515;Dbxref=GenBank:WP_000700679.1;Name=WP_000700679.1;Ontology_term=GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citD;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459615.1;locus_tag=C9F05_RS01515;product=citrate lyase acyl carrier protein;protein_id=WP_000700679.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	17507	18583	.	-	.	ID=gene-C9F05_RS01520;Name=citC;gbkey=Gene;gene=citC;gene_biotype=protein_coding;locus_tag=C9F05_RS01520;old_locus_tag=C9F05_01550
NZ_PYKE01000028.1	Protein Homology	CDS	17507	18583	.	-	0	ID=cds-WP_000467874.1;Parent=gene-C9F05_RS01520;Dbxref=GenBank:WP_000467874.1;Name=WP_000467874.1;Ontology_term=GO:0006101,GO:0008771;gbkey=CDS;gene=citC;go_function=[citrate (pro-3S)-lyase] ligase activity|0008771||IEA;go_process=citrate metabolic process|0006101||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459616.1;locus_tag=C9F05_RS01520;product=[citrate (pro-3S)-lyase] ligase;protein_id=WP_000467874.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	18968	20629	.	+	.	ID=gene-C9F05_RS01525;Name=dpiB;gbkey=Gene;gene=dpiB;gene_biotype=protein_coding;locus_tag=C9F05_RS01525;old_locus_tag=C9F05_01560
NZ_PYKE01000028.1	Protein Homology	CDS	18968	20629	.	+	0	ID=cds-WP_023228680.1;Parent=gene-C9F05_RS01525;Dbxref=GenBank:WP_023228680.1;Name=WP_023228680.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=dpiB;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459617.1;locus_tag=C9F05_RS01525;product=sensor histidine kinase DpiB;protein_id=WP_023228680.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	20598	21278	.	+	.	ID=gene-C9F05_RS01530;Name=dpiA;gbkey=Gene;gene=dpiA;gene_biotype=protein_coding;gene_synonym=citB;locus_tag=C9F05_RS01530;old_locus_tag=C9F05_01565
NZ_PYKE01000028.1	Protein Homology	CDS	20598	21278	.	+	0	ID=cds-WP_000138786.1;Parent=gene-C9F05_RS01530;Dbxref=GenBank:WP_000138786.1;Name=WP_000138786.1;gbkey=CDS;gene=dpiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459618.1;locus_tag=C9F05_RS01530;product=two-component response regulator DpiA;protein_id=WP_000138786.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	21332	22717	.	-	.	ID=gene-C9F05_RS01535;Name=dcuC;gbkey=Gene;gene=dcuC;gene_biotype=protein_coding;locus_tag=C9F05_RS01535;old_locus_tag=C9F05_01570
NZ_PYKE01000028.1	Protein Homology	CDS	21332	22717	.	-	0	ID=cds-WP_135369959.1;Parent=gene-C9F05_RS01535;Dbxref=GenBank:WP_135369959.1;Name=WP_135369959.1;Ontology_term=GO:0015740,GO:0015556;gbkey=CDS;gene=dcuC;go_function=C4-dicarboxylate transmembrane transporter activity|0015556||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000958620.1;locus_tag=C9F05_RS01535;product=anaerobic C4-dicarboxylate transporter DcuC;protein_id=WP_135369959.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	23094	23666	.	+	.	ID=gene-C9F05_RS01540;Name=pagP;gbkey=Gene;gene=pagP;gene_biotype=protein_coding;locus_tag=C9F05_RS01540;old_locus_tag=C9F05_01575
NZ_PYKE01000028.1	Protein Homology	CDS	23094	23666	.	+	0	ID=cds-WP_001637197.1;Parent=gene-C9F05_RS01540;Dbxref=GenBank:WP_001637197.1;Name=WP_001637197.1;gbkey=CDS;gene=pagP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459620.1;locus_tag=C9F05_RS01540;product=lipid IV(A) palmitoyltransferase PagP;protein_id=WP_001637197.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	23854	24063	.	+	.	ID=gene-C9F05_RS01545;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=C9F05_RS01545;old_locus_tag=C9F05_01580
NZ_PYKE01000028.1	Protein Homology	CDS	23854	24063	.	+	0	ID=cds-WP_000034826.1;Parent=gene-C9F05_RS01545;Dbxref=GenBank:WP_000034826.1;Name=WP_000034826.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459621.1;locus_tag=C9F05_RS01545;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_000034826.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	24121	24504	.	-	.	ID=gene-C9F05_RS01550;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=C9F05_RS01550;old_locus_tag=C9F05_01585
NZ_PYKE01000028.1	Protein Homology	CDS	24121	24504	.	-	0	ID=cds-WP_000939753.1;Parent=gene-C9F05_RS01550;Dbxref=GenBank:WP_000939753.1;Name=WP_000939753.1;Ontology_term=GO:0016020;gbkey=CDS;gene=crcB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459622.1;locus_tag=C9F05_RS01550;product=fluoride efflux transporter CrcB;protein_id=WP_000939753.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	24595	25383	.	+	.	ID=gene-C9F05_RS01555;Name=C9F05_RS01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01555;old_locus_tag=C9F05_01590
NZ_PYKE01000028.1	Protein Homology	CDS	24595	25383	.	+	0	ID=cds-WP_135369960.1;Parent=gene-C9F05_RS01555;Dbxref=GenBank:WP_135369960.1;Name=WP_135369960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459623.1;locus_tag=C9F05_RS01555;product=deaminated glutathione amidase;protein_id=WP_135369960.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	25512	25715	.	+	.	ID=gene-C9F05_RS01560;Name=tatE;gbkey=Gene;gene=tatE;gene_biotype=protein_coding;locus_tag=C9F05_RS01560;old_locus_tag=C9F05_01595
NZ_PYKE01000028.1	Protein Homology	CDS	25512	25715	.	+	0	ID=cds-WP_000503938.1;Parent=gene-C9F05_RS01560;Dbxref=GenBank:WP_000503938.1;Name=WP_000503938.1;gbkey=CDS;gene=tatE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459624.1;locus_tag=C9F05_RS01560;product=twin-arginine translocase subunit TatE;protein_id=WP_000503938.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	25801	26766	.	-	.	ID=gene-C9F05_RS01565;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=C9F05_RS01565;old_locus_tag=C9F05_01600
NZ_PYKE01000028.1	Protein Homology	CDS	25801	26766	.	-	0	ID=cds-WP_000042640.1;Parent=gene-C9F05_RS01565;Dbxref=GenBank:WP_000042640.1;Name=WP_000042640.1;Ontology_term=GO:0009107,GO:0016992,GO:0051539,GO:1904047;gbkey=CDS;gene=lipA;go_function=lipoate synthase activity|0016992||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=lipoate biosynthetic process|0009107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904980.1;locus_tag=C9F05_RS01565;product=lipoyl synthase;protein_id=WP_000042640.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	26972	27925	.	-	.	ID=gene-C9F05_RS01570;Name=C9F05_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01570;old_locus_tag=C9F05_01605
NZ_PYKE01000028.1	Protein Homology	CDS	26972	27925	.	-	0	ID=cds-WP_001282817.1;Parent=gene-C9F05_RS01570;Dbxref=GenBank:WP_001282817.1;Name=WP_001282817.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459626.1;locus_tag=C9F05_RS01570;product=YbeF family transcriptional regulator;protein_id=WP_001282817.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	28227	28868	.	-	.	ID=gene-C9F05_RS01575;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=C9F05_RS01575;old_locus_tag=C9F05_01610
NZ_PYKE01000028.1	Protein Homology	CDS	28227	28868	.	-	0	ID=cds-WP_135369961.1;Parent=gene-C9F05_RS01575;Dbxref=GenBank:WP_135369961.1;Name=WP_135369961.1;Ontology_term=GO:0009249,GO:0033819;gbkey=CDS;gene=lipB;go_function=lipoyl(octanoyl) transferase activity|0033819||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415163.2;locus_tag=C9F05_RS01575;product=lipoyl(octanoyl) transferase LipB;protein_id=WP_135369961.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	28968	29231	.	-	.	ID=gene-C9F05_RS01580;Name=ybeD;gbkey=Gene;gene=ybeD;gene_biotype=protein_coding;locus_tag=C9F05_RS01580;old_locus_tag=C9F05_01615
NZ_PYKE01000028.1	Protein Homology	CDS	28968	29231	.	-	0	ID=cds-WP_000850547.1;Parent=gene-C9F05_RS01580;Dbxref=GenBank:WP_000850547.1;Name=WP_000850547.1;gbkey=CDS;gene=ybeD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459628.1;locus_tag=C9F05_RS01580;product=DUF493 family protein YbeD;protein_id=WP_000850547.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	29340	30551	.	-	.	ID=gene-C9F05_RS01585;Name=dacA;gbkey=Gene;gene=dacA;gene_biotype=protein_coding;locus_tag=C9F05_RS01585;old_locus_tag=C9F05_01620
NZ_PYKE01000028.1	Protein Homology	CDS	29340	30551	.	-	0	ID=cds-WP_000858711.1;Parent=gene-C9F05_RS01585;Dbxref=GenBank:WP_000858711.1;Name=WP_000858711.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=dacA;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459629.1;locus_tag=C9F05_RS01585;product=D-alanyl-D-alanine carboxypeptidase DacA;protein_id=WP_000858711.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	30691	31824	.	-	.	ID=gene-C9F05_RS01590;Name=rlpA;gbkey=Gene;gene=rlpA;gene_biotype=protein_coding;locus_tag=C9F05_RS01590;old_locus_tag=C9F05_01625
NZ_PYKE01000028.1	Protein Homology	CDS	30691	31824	.	-	0	ID=cds-WP_023258554.1;Parent=gene-C9F05_RS01590;Dbxref=GenBank:WP_023258554.1;Name=WP_023258554.1;Ontology_term=GO:0042834;gbkey=CDS;gene=rlpA;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459630.1;locus_tag=C9F05_RS01590;product=endolytic peptidoglycan transglycosylase RlpA;protein_id=WP_023258554.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	31835	32947	.	-	.	ID=gene-C9F05_RS01595;Name=mrdB;gbkey=Gene;gene=mrdB;gene_biotype=protein_coding;gene_synonym=rodA;locus_tag=C9F05_RS01595;old_locus_tag=C9F05_01630
NZ_PYKE01000028.1	Protein Homology	CDS	31835	32947	.	-	0	ID=cds-WP_000131713.1;Parent=gene-C9F05_RS01595;Dbxref=GenBank:WP_000131713.1;Name=WP_000131713.1;Note=rod shape-determining protein RodA;gbkey=CDS;gene=mrdB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004885876.1;locus_tag=C9F05_RS01595;product=peptidoglycan glycosyltransferase MrdB;protein_id=WP_000131713.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	32950	34851	.	-	.	ID=gene-C9F05_RS01600;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=C9F05_RS01600;old_locus_tag=C9F05_01635
NZ_PYKE01000028.1	Protein Homology	CDS	32950	34851	.	-	0	ID=cds-WP_000828700.1;Parent=gene-C9F05_RS01600;Dbxref=GenBank:WP_000828700.1;Name=WP_000828700.1;Ontology_term=GO:0009252,GO:0008658,GO:0009002,GO:0016020;gbkey=CDS;gene=mrdA;go_component=membrane|0016020||IEA;go_function=penicillin binding|0008658||IEA,serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459632.1;locus_tag=C9F05_RS01600;product=peptidoglycan DD-transpeptidase MrdA;protein_id=WP_000828700.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	34882	35349	.	-	.	ID=gene-C9F05_RS01605;Name=rlmH;gbkey=Gene;gene=rlmH;gene_biotype=protein_coding;locus_tag=C9F05_RS01605;old_locus_tag=C9F05_01640
NZ_PYKE01000028.1	Protein Homology	CDS	34882	35349	.	-	0	ID=cds-WP_000776107.1;Parent=gene-C9F05_RS01605;Dbxref=GenBank:WP_000776107.1;Name=WP_000776107.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rlmH;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016245807.1;locus_tag=C9F05_RS01605;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=WP_000776107.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	35353	35670	.	-	.	ID=gene-C9F05_RS01610;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=C9F05_RS01610;old_locus_tag=C9F05_01645
NZ_PYKE01000028.1	Protein Homology	CDS	35353	35670	.	-	0	ID=cds-WP_001161670.1;Parent=gene-C9F05_RS01610;Dbxref=GenBank:WP_001161670.1;Name=WP_001161670.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007373852.1;locus_tag=C9F05_RS01610;product=ribosome silencing factor;protein_id=WP_001161670.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	35999	36607	.	-	.	ID=gene-C9F05_RS01615;Name=C9F05_RS01615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01615;old_locus_tag=C9F05_01650
NZ_PYKE01000028.1	Protein Homology	CDS	35999	36607	.	-	0	ID=cds-WP_001523290.1;Parent=gene-C9F05_RS01615;Dbxref=GenBank:WP_001523290.1;Name=WP_001523290.1;Ontology_term=GO:0009236,GO:0043755;gbkey=CDS;go_function=alpha-ribazole phosphatase activity|0043755||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459635.1;locus_tag=C9F05_RS01615;product=adenosylcobalamin/alpha-ribazole phosphatase;protein_id=WP_001523290.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	36704	37798	.	+	.	ID=gene-C9F05_RS01620;Name=cobD;gbkey=Gene;gene=cobD;gene_biotype=protein_coding;locus_tag=C9F05_RS01620;old_locus_tag=C9F05_01655
NZ_PYKE01000028.1	Protein Homology	CDS	36704	37798	.	+	0	ID=cds-WP_135369962.1;Parent=gene-C9F05_RS01620;Dbxref=GenBank:WP_135369962.1;Name=WP_135369962.1;Ontology_term=GO:0009236,GO:0003824;gbkey=CDS;gene=cobD;go_function=catalytic activity|0003824||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459636.1;locus_tag=C9F05_RS01620;product=threonine-phosphate decarboxylase CobD;protein_id=WP_135369962.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	37773	38414	.	-	.	ID=gene-C9F05_RS01625;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=C9F05_RS01625;old_locus_tag=C9F05_01660
NZ_PYKE01000028.1	Protein Homology	CDS	37773	38414	.	-	0	ID=cds-WP_001518902.1;Parent=gene-C9F05_RS01625;Dbxref=GenBank:WP_001518902.1;Name=WP_001518902.1;Ontology_term=GO:0009435,GO:0016779;gbkey=CDS;gene=nadD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=NAD+ biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459637.1;locus_tag=C9F05_RS01625;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_001518902.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	38416	39447	.	-	.	ID=gene-C9F05_RS01630;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=C9F05_RS01630;old_locus_tag=C9F05_01665
NZ_PYKE01000028.1	Protein Homology	CDS	38416	39447	.	-	0	ID=cds-WP_000620491.1;Parent=gene-C9F05_RS01630;Dbxref=GenBank:WP_000620491.1;Name=WP_000620491.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=holA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459638.1;locus_tag=C9F05_RS01630;product=DNA polymerase III subunit delta;protein_id=WP_000620491.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	39447	40037	.	-	.	ID=gene-C9F05_RS01635;Name=lptE;gbkey=Gene;gene=lptE;gene_biotype=protein_coding;locus_tag=C9F05_RS01635;old_locus_tag=C9F05_01670
NZ_PYKE01000028.1	Protein Homology	CDS	39447	40037	.	-	0	ID=cds-WP_001269950.1;Parent=gene-C9F05_RS01635;Dbxref=GenBank:WP_001269950.1;Name=WP_001269950.1;Ontology_term=GO:0043165,GO:0019867;gbkey=CDS;gene=lptE;go_component=outer membrane|0019867||IEA;go_process=Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459639.1;locus_tag=C9F05_RS01635;product=LPS assembly lipoprotein LptE;protein_id=WP_001269950.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	40052	42634	.	-	.	ID=gene-C9F05_RS01640;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=C9F05_RS01640;old_locus_tag=C9F05_01675
NZ_PYKE01000028.1	Protein Homology	CDS	40052	42634	.	-	0	ID=cds-WP_001157916.1;Parent=gene-C9F05_RS01640;Dbxref=GenBank:WP_001157916.1;Name=WP_001157916.1;Ontology_term=GO:0006429,GO:0000166,GO:0004823,GO:0005524;gbkey=CDS;gene=leuS;go_function=nucleotide binding|0000166||IEA,leucine-tRNA ligase activity|0004823||IEA,ATP binding|0005524||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008456064.1;locus_tag=C9F05_RS01640;product=leucine--tRNA ligase;protein_id=WP_001157916.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	42871	43212	.	+	.	ID=gene-C9F05_RS01645;Name=C9F05_RS01645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01645;old_locus_tag=C9F05_01680
NZ_PYKE01000028.1	Protein Homology	CDS	42871	43212	.	+	0	ID=cds-WP_001574029.1;Parent=gene-C9F05_RS01645;Dbxref=GenBank:WP_001574029.1;Name=WP_001574029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447100.1;locus_tag=C9F05_RS01645;product=UxaA family hydrolase;protein_id=WP_001574029.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	43229	44401	.	+	.	ID=gene-C9F05_RS01650;Name=C9F05_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01650;old_locus_tag=C9F05_01685
NZ_PYKE01000028.1	Protein Homology	CDS	43229	44401	.	+	0	ID=cds-WP_001670689.1;Parent=gene-C9F05_RS01650;Dbxref=GenBank:WP_001670689.1;Name=WP_001670689.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447101.1;locus_tag=C9F05_RS01650;product=UxaA family hydrolase;protein_id=WP_001670689.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	44451	45404	.	+	.	ID=gene-C9F05_RS01655;Name=C9F05_RS01655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01655;old_locus_tag=C9F05_01690
NZ_PYKE01000028.1	Protein Homology	CDS	44451	45404	.	+	0	ID=cds-WP_000694477.1;Parent=gene-C9F05_RS01655;Dbxref=GenBank:WP_000694477.1;Name=WP_000694477.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459643.1;locus_tag=C9F05_RS01655;product=2-keto-3-deoxygluconate permease;protein_id=WP_000694477.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	45472	47400	.	+	.	ID=gene-C9F05_RS01660;Name=C9F05_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01660;old_locus_tag=C9F05_01695
NZ_PYKE01000028.1	Protein Homology	CDS	45472	47400	.	+	0	ID=cds-WP_135369963.1;Parent=gene-C9F05_RS01660;Dbxref=GenBank:WP_135369963.1;Name=WP_135369963.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459644.1;locus_tag=C9F05_RS01660;product=sigma-54 interaction domain-containing protein;protein_id=WP_135369963.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	47493	47966	.	+	.	ID=gene-C9F05_RS01665;Name=C9F05_RS01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01665;old_locus_tag=C9F05_01700
NZ_PYKE01000028.1	Protein Homology	CDS	47493	47966	.	+	0	ID=cds-WP_001044884.1;Parent=gene-C9F05_RS01665;Dbxref=GenBank:WP_001044884.1;Name=WP_001044884.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459645.1;locus_tag=C9F05_RS01665;product=zinc ribbon-containing protein;protein_id=WP_001044884.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	48005	49000	.	-	.	ID=gene-C9F05_RS01670;Name=C9F05_RS01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01670;old_locus_tag=C9F05_01705
NZ_PYKE01000028.1	Protein Homology	CDS	48005	49000	.	-	0	ID=cds-WP_135369964.1;Parent=gene-C9F05_RS01670;Dbxref=GenBank:WP_135369964.1;Name=WP_135369964.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459646.1;locus_tag=C9F05_RS01670;product=tetratricopeptide repeat protein;protein_id=WP_135369964.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	49125	49832	.	+	.	ID=gene-C9F05_RS01675;Name=C9F05_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01675;old_locus_tag=C9F05_01710
NZ_PYKE01000028.1	Protein Homology	CDS	49125	49832	.	+	0	ID=cds-WP_023137867.1;Parent=gene-C9F05_RS01675;Dbxref=GenBank:WP_023137867.1;Name=WP_023137867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459647.1;locus_tag=C9F05_RS01675;product=DUF1266 domain-containing protein;protein_id=WP_023137867.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	49829	51262	.	+	.	ID=gene-C9F05_RS01680;Name=C9F05_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01680;old_locus_tag=C9F05_01715
NZ_PYKE01000028.1	Protein Homology	CDS	49829	51262	.	+	0	ID=cds-WP_135369965.1;Parent=gene-C9F05_RS01680;Dbxref=GenBank:WP_135369965.1;Name=WP_135369965.1;Ontology_term=GO:0006457;gbkey=CDS;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459648.1;locus_tag=C9F05_RS01680;product=J domain-containing protein;protein_id=WP_135369965.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	51274	51969	.	+	.	ID=gene-C9F05_RS01685;Name=C9F05_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01685;old_locus_tag=C9F05_01720
NZ_PYKE01000028.1	Protein Homology	CDS	51274	51969	.	+	0	ID=cds-WP_000356622.1;Parent=gene-C9F05_RS01685;Dbxref=GenBank:WP_000356622.1;Name=WP_000356622.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459649.1;locus_tag=C9F05_RS01685;product=DUF1266 domain-containing protein;protein_id=WP_000356622.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	51966	53438	.	+	.	ID=gene-C9F05_RS01690;Name=C9F05_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01690;old_locus_tag=C9F05_01725
NZ_PYKE01000028.1	Protein Homology	CDS	51966	53438	.	+	0	ID=cds-WP_021000065.1;Parent=gene-C9F05_RS01690;Dbxref=GenBank:WP_021000065.1;Name=WP_021000065.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459650.1;locus_tag=C9F05_RS01690;product=J domain-containing protein;protein_id=WP_021000065.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	53460	55139	.	-	.	ID=gene-C9F05_RS01695;Name=hscC;gbkey=Gene;gene=hscC;gene_biotype=protein_coding;locus_tag=C9F05_RS01695;old_locus_tag=C9F05_01730
NZ_PYKE01000028.1	Protein Homology	CDS	53460	55139	.	-	0	ID=cds-WP_135369966.1;Parent=gene-C9F05_RS01695;Dbxref=GenBank:WP_135369966.1;Name=WP_135369966.1;gbkey=CDS;gene=hscC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459651.1;locus_tag=C9F05_RS01695;product=molecular chaperone HscC;protein_id=WP_135369966.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	pseudogene	55215	56453	.	-	.	ID=gene-C9F05_RS01700;Name=C9F05_RS01700;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS01700;old_locus_tag=C9F05_01735;pseudo=true
NZ_PYKE01000028.1	Protein Homology	CDS	55215	56453	.	-	0	ID=cds-C9F05_RS01700;Parent=gene-C9F05_RS01700;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459652.1;locus_tag=C9F05_RS01700;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	56485	57420	.	-	.	ID=gene-C9F05_RS01705;Name=rihA;gbkey=Gene;gene=rihA;gene_biotype=protein_coding;locus_tag=C9F05_RS01705;old_locus_tag=C9F05_01740
NZ_PYKE01000028.1	Protein Homology	CDS	56485	57420	.	-	0	ID=cds-WP_135369967.1;Parent=gene-C9F05_RS01705;Dbxref=GenBank:WP_135369967.1;Name=WP_135369967.1;Ontology_term=GO:0006206,GO:0050263;gbkey=CDS;gene=rihA;go_function=ribosylpyrimidine nucleosidase activity|0050263||IEA;go_process=pyrimidine nucleobase metabolic process|0006206||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459653.1;locus_tag=C9F05_RS01705;product=pyrimidine-specific ribonucleoside hydrolase RihA;protein_id=WP_135369967.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	57537	58262	.	-	.	ID=gene-C9F05_RS01710;Name=gltL;gbkey=Gene;gene=gltL;gene_biotype=protein_coding;locus_tag=C9F05_RS01710;old_locus_tag=C9F05_01745
NZ_PYKE01000028.1	Protein Homology	CDS	57537	58262	.	-	0	ID=cds-WP_000631369.1;Parent=gene-C9F05_RS01710;Dbxref=GenBank:WP_000631369.1;Name=WP_000631369.1;gbkey=CDS;gene=gltL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020245804.1;locus_tag=C9F05_RS01710;product=glutamate/aspartate ABC transporter ATP-binding protein GltL;protein_id=WP_000631369.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	58262	58936	.	-	.	ID=gene-C9F05_RS01715;Name=gltK;gbkey=Gene;gene=gltK;gene_biotype=protein_coding;locus_tag=C9F05_RS01715;old_locus_tag=C9F05_01750
NZ_PYKE01000028.1	Protein Homology	CDS	58262	58936	.	-	0	ID=cds-WP_000272799.1;Parent=gene-C9F05_RS01715;Dbxref=GenBank:WP_000272799.1;Name=WP_000272799.1;gbkey=CDS;gene=gltK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459655.1;locus_tag=C9F05_RS01715;product=glutamate/aspartate ABC transporter permease GltK;protein_id=WP_000272799.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	58936	59676	.	-	.	ID=gene-C9F05_RS01720;Name=gltJ;gbkey=Gene;gene=gltJ;gene_biotype=protein_coding;locus_tag=C9F05_RS01720;old_locus_tag=C9F05_01755
NZ_PYKE01000028.1	Protein Homology	CDS	58936	59676	.	-	0	ID=cds-WP_000020930.1;Parent=gene-C9F05_RS01720;Dbxref=GenBank:WP_000020930.1;Name=WP_000020930.1;gbkey=CDS;gene=gltJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459656.1;locus_tag=C9F05_RS01720;product=glutamate/aspartate ABC transporter permease GltJ;protein_id=WP_000020930.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	59836	60744	.	-	.	ID=gene-C9F05_RS01725;Name=C9F05_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01725;old_locus_tag=C9F05_01760
NZ_PYKE01000028.1	Protein Homology	CDS	59836	60744	.	-	0	ID=cds-WP_001518176.1;Parent=gene-C9F05_RS01725;Dbxref=GenBank:WP_001518176.1;Name=WP_001518176.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308721.1;locus_tag=C9F05_RS01725;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_001518176.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	61162	62700	.	-	.	ID=gene-C9F05_RS01730;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=C9F05_RS01730;old_locus_tag=C9F05_01765
NZ_PYKE01000028.1	Protein Homology	CDS	61162	62700	.	-	0	ID=cds-WP_076936424.1;Parent=gene-C9F05_RS01730;Dbxref=GenBank:WP_076936424.1;Name=WP_076936424.1;Ontology_term=GO:0042158,GO:0016410,GO:0016020;gbkey=CDS;gene=lnt;go_component=membrane|0016020||IEA;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipoprotein biosynthetic process|0042158||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459658.1;locus_tag=C9F05_RS01730;product=apolipoprotein N-acyltransferase;protein_id=WP_076936424.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	62720	63598	.	-	.	ID=gene-C9F05_RS01735;Name=corC;gbkey=Gene;gene=corC;gene_biotype=protein_coding;locus_tag=C9F05_RS01735;old_locus_tag=C9F05_01770
NZ_PYKE01000028.1	Protein Homology	CDS	62720	63598	.	-	0	ID=cds-WP_001278615.1;Parent=gene-C9F05_RS01735;Dbxref=GenBank:WP_001278615.1;Name=WP_001278615.1;Note=CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter (CNNM) family%2C and was characterized as belonging to a set of three proteins%2C at least one of which must be present for CorA to function.;Ontology_term=GO:0050660;gbkey=CDS;gene=corC;go_function=flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459659.1;locus_tag=C9F05_RS01735;product=CNNM family magnesium/cobalt transport protein CorC;protein_id=WP_001278615.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	63756	64229	.	-	.	ID=gene-C9F05_RS01740;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=C9F05_RS01740;old_locus_tag=C9F05_01775
NZ_PYKE01000028.1	Protein Homology	CDS	63756	64229	.	-	0	ID=cds-WP_000084477.1;Parent=gene-C9F05_RS01740;Dbxref=GenBank:WP_000084477.1;Name=WP_000084477.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=RNA nuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459660.1;locus_tag=C9F05_RS01740;product=rRNA maturation RNase YbeY;protein_id=WP_000084477.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	64226	65272	.	-	.	ID=gene-C9F05_RS01745;Name=C9F05_RS01745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01745;old_locus_tag=C9F05_01780
NZ_PYKE01000028.1	Protein Homology	CDS	64226	65272	.	-	0	ID=cds-WP_001018045.1;Parent=gene-C9F05_RS01745;Dbxref=GenBank:WP_001018045.1;Name=WP_001018045.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225825.1;locus_tag=C9F05_RS01745;product=PhoH family protein;protein_id=WP_001018045.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	65477	66901	.	-	.	ID=gene-C9F05_RS01750;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=C9F05_RS01750;old_locus_tag=C9F05_01785
NZ_PYKE01000028.1	Protein Homology	CDS	65477	66901	.	-	0	ID=cds-WP_001519200.1;Parent=gene-C9F05_RS01750;Dbxref=GenBank:WP_001519200.1;Name=WP_001519200.1;Ontology_term=GO:0006400,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=miaB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459662.1;locus_tag=C9F05_RS01750;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=WP_001519200.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	67045	68220	.	+	.	ID=gene-C9F05_RS01755;Name=ubiF;gbkey=Gene;gene=ubiF;gene_biotype=protein_coding;locus_tag=C9F05_RS01755;old_locus_tag=C9F05_01790
NZ_PYKE01000028.1	Protein Homology	CDS	67045	68220	.	+	0	ID=cds-WP_135369968.1;Parent=gene-C9F05_RS01755;Dbxref=GenBank:WP_135369968.1;Name=WP_135369968.1;Ontology_term=GO:0006744,GO:0016709;gbkey=CDS;gene=ubiF;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459663.1;locus_tag=C9F05_RS01755;product=3-demethoxyubiquinol 3-hydroxylase;protein_id=WP_135369968.1;transl_table=11
NZ_PYKE01000028.1	RefSeq	gene	68351	68425	.	-	.	ID=gene-C9F05_RS01760;Name=C9F05_RS01760;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS01760;old_locus_tag=C9F05_01795
NZ_PYKE01000028.1	tRNAscan-SE	tRNA	68351	68425	.	-	.	ID=rna-C9F05_RS01760;Parent=gene-C9F05_RS01760;anticodon=(pos:complement(68391..68393));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01760;product=tRNA-Gln
NZ_PYKE01000028.1	tRNAscan-SE	exon	68351	68425	.	-	.	ID=exon-C9F05_RS01760-1;Parent=rna-C9F05_RS01760;anticodon=(pos:complement(68391..68393));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01760;product=tRNA-Gln
NZ_PYKE01000028.1	RefSeq	gene	68469	68543	.	-	.	ID=gene-C9F05_RS01765;Name=C9F05_RS01765;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS01765;old_locus_tag=C9F05_01800
NZ_PYKE01000028.1	tRNAscan-SE	tRNA	68469	68543	.	-	.	ID=rna-C9F05_RS01765;Parent=gene-C9F05_RS01765;anticodon=(pos:complement(68509..68511));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01765;product=tRNA-Gln
NZ_PYKE01000028.1	tRNAscan-SE	exon	68469	68543	.	-	.	ID=exon-C9F05_RS01765-1;Parent=rna-C9F05_RS01765;anticodon=(pos:complement(68509..68511));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS01765;product=tRNA-Gln
##sequence-region NZ_PYKE01000044.1 1 2740
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000044.1	RefSeq	region	1	2740	.	+	.	ID=NZ_PYKE01000044.1:1..2740;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000044.1	RefSeq	gene	1	252	.	+	.	ID=gene-C9F05_RS03020;Name=C9F05_RS03020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03020;old_locus_tag=C9F05_03070;partial=true;start_range=.,1
NZ_PYKE01000044.1	Protein Homology	CDS	1	252	.	+	0	ID=cds-WP_135370018.1;Parent=gene-C9F05_RS03020;Dbxref=GenBank:WP_135370018.1;Name=WP_135370018.1;Ontology_term=GO:0098004;gbkey=CDS;go_process=virus tail fiber assembly|0098004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461522.1;locus_tag=C9F05_RS03020;partial=true;product=tail fiber assembly protein;protein_id=WP_135370018.1;start_range=.,1;transl_table=11
NZ_PYKE01000044.1	RefSeq	gene	403	1257	.	+	.	ID=gene-C9F05_RS03025;Name=yibB;gbkey=Gene;gene=yibB;gene_biotype=protein_coding;locus_tag=C9F05_RS03025;old_locus_tag=C9F05_03075
NZ_PYKE01000044.1	Protein Homology	CDS	403	1257	.	+	0	ID=cds-WP_080187682.1;Parent=gene-C9F05_RS03025;Dbxref=GenBank:WP_080187682.1;Name=WP_080187682.1;gbkey=CDS;gene=yibB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002950287.1;locus_tag=C9F05_RS03025;product=protein YibB;protein_id=WP_080187682.1;transl_table=11
NZ_PYKE01000044.1	RefSeq	gene	1326	2740	.	-	.	ID=gene-C9F05_RS03030;Name=C9F05_RS03030;end_range=2740,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03030;old_locus_tag=C9F05_03080;partial=true
NZ_PYKE01000044.1	Protein Homology	CDS	1326	2740	.	-	2	ID=cds-WP_255121298.1;Parent=gene-C9F05_RS03030;Dbxref=GenBank:WP_255121298.1;Name=WP_255121298.1;Ontology_term=GO:0008484;end_range=2740,.;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000813703.1;locus_tag=C9F05_RS03030;partial=true;product=sulfatase-like hydrolase/transferase;protein_id=WP_255121298.1;transl_table=11
##sequence-region NZ_PYKE01000047.1 1 2729
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000047.1	RefSeq	region	1	2729	.	+	.	ID=NZ_PYKE01000047.1:1..2729;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000047.1	RefSeq	pseudogene	1	860	.	+	.	ID=gene-C9F05_RS23740;Name=C9F05_RS23740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23740;old_locus_tag=C9F05_03130;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000047.1	Protein Homology	CDS	1	860	.	+	2	ID=cds-C9F05_RS23740;Parent=gene-C9F05_RS23740;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001274642.1;locus_tag=C9F05_RS23740;partial=true;product=phage tail protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000047.1	RefSeq	gene	830	1447	.	+	.	ID=gene-C9F05_RS03085;Name=C9F05_RS03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03085;old_locus_tag=C9F05_03135
NZ_PYKE01000047.1	Protein Homology	CDS	830	1447	.	+	0	ID=cds-WP_077945906.1;Parent=gene-C9F05_RS03085;Dbxref=GenBank:WP_077945906.1;Name=WP_077945906.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461633.1;locus_tag=C9F05_RS03085;product=tail fiber assembly protein;protein_id=WP_077945906.1;transl_table=11
NZ_PYKE01000047.1	RefSeq	gene	1451	1990	.	-	.	ID=gene-C9F05_RS03090;Name=C9F05_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03090;old_locus_tag=C9F05_03140
NZ_PYKE01000047.1	Protein Homology	CDS	1451	1990	.	-	0	ID=cds-WP_061377548.1;Parent=gene-C9F05_RS03090;Dbxref=GenBank:WP_061377548.1;Name=WP_061377548.1;Ontology_term=GO:0098004;gbkey=CDS;go_process=virus tail fiber assembly|0098004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000972188.1;locus_tag=C9F05_RS03090;product=tail fiber assembly protein;protein_id=WP_061377548.1;transl_table=11
NZ_PYKE01000047.1	RefSeq	gene	1993	2729	.	-	.	ID=gene-C9F05_RS03095;Name=C9F05_RS03095;end_range=2729,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03095;old_locus_tag=C9F05_03145;partial=true
NZ_PYKE01000047.1	Protein Homology	CDS	1993	2729	.	-	2	ID=cds-WP_023218228.1;Parent=gene-C9F05_RS03095;Dbxref=GenBank:WP_023218228.1;Name=WP_023218228.1;end_range=2729,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000232919.1;locus_tag=C9F05_RS03095;partial=true;product=hypothetical protein;protein_id=WP_023218228.1;transl_table=11
##sequence-region NZ_PYKE01000097.1 1 25121
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000097.1	RefSeq	region	1	25121	.	+	.	ID=NZ_PYKE01000097.1:1..25121;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000097.1	RefSeq	gene	121	2376	.	+	.	ID=gene-C9F05_RS06955;Name=C9F05_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06955;old_locus_tag=C9F05_07095
NZ_PYKE01000097.1	Protein Homology	CDS	121	2376	.	+	0	ID=cds-WP_001539399.1;Parent=gene-C9F05_RS06955;Dbxref=GenBank:WP_001539399.1;Name=WP_001539399.1;Ontology_term=GO:0015891,GO:0015343,GO:0038023,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=siderophore-iron transmembrane transporter activity|0015343||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459577.1;locus_tag=C9F05_RS06955;product=TonB-dependent siderophore receptor;protein_id=WP_001539399.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	2422	3126	.	+	.	ID=gene-C9F05_RS06960;Name=entD;gbkey=Gene;gene=entD;gene_biotype=protein_coding;locus_tag=C9F05_RS06960;old_locus_tag=C9F05_07100
NZ_PYKE01000097.1	Protein Homology	CDS	2422	3126	.	+	0	ID=cds-WP_135370138.1;Parent=gene-C9F05_RS06960;Dbxref=GenBank:WP_135370138.1;Name=WP_135370138.1;Ontology_term=GO:0009239,GO:0000287,GO:0008897,GO:0009366;gbkey=CDS;gene=entD;go_component=enterobactin synthetase complex|0009366||IEA;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=enterobactin biosynthetic process|0009239||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459576.1;locus_tag=C9F05_RS06960;product=enterobactin synthase subunit EntD;protein_id=WP_135370138.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	3138	4256	.	+	.	ID=gene-C9F05_RS06965;Name=C9F05_RS06965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06965;old_locus_tag=C9F05_07105
NZ_PYKE01000097.1	Protein Homology	CDS	3138	4256	.	+	0	ID=cds-WP_001196910.1;Parent=gene-C9F05_RS06965;Dbxref=GenBank:WP_001196910.1;Name=WP_001196910.1;Ontology_term=GO:0042398,GO:0004357;gbkey=CDS;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=modified amino acid biosynthetic process|0042398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459575.1;locus_tag=C9F05_RS06965;product=YbdK family carboxylate-amine ligase;protein_id=WP_001196910.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	4323	4571	.	+	.	ID=gene-C9F05_RS06970;Name=C9F05_RS06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06970;old_locus_tag=C9F05_07110
NZ_PYKE01000097.1	Protein Homology	CDS	4323	4571	.	+	0	ID=cds-WP_000682497.1;Parent=gene-C9F05_RS06970;Dbxref=GenBank:WP_000682497.1;Name=WP_000682497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459574.1;locus_tag=C9F05_RS06970;product=DUF1158 family protein;protein_id=WP_000682497.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	4577	4918	.	-	.	ID=gene-C9F05_RS06975;Name=C9F05_RS06975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06975;old_locus_tag=C9F05_07115
NZ_PYKE01000097.1	Protein Homology	CDS	4577	4918	.	-	0	ID=cds-WP_000155631.1;Parent=gene-C9F05_RS06975;Dbxref=GenBank:WP_000155631.1;Name=WP_000155631.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459573.1;locus_tag=C9F05_RS06975;product=RamA family antibiotic efflux transcriptional regulator;protein_id=WP_000155631.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	5207	5788	.	+	.	ID=gene-C9F05_RS06980;Name=C9F05_RS06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06980;old_locus_tag=C9F05_07120
NZ_PYKE01000097.1	Protein Homology	CDS	5207	5788	.	+	0	ID=cds-WP_000113609.1;Parent=gene-C9F05_RS06980;Dbxref=GenBank:WP_000113609.1;Name=WP_000113609.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459572.1;locus_tag=C9F05_RS06980;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000113609.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	5788	6156	.	+	.	ID=gene-C9F05_RS06985;Name=C9F05_RS06985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06985;old_locus_tag=C9F05_07125
NZ_PYKE01000097.1	Protein Homology	CDS	5788	6156	.	+	0	ID=cds-WP_135370139.1;Parent=gene-C9F05_RS06985;Dbxref=GenBank:WP_135370139.1;Name=WP_135370139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459571.1;locus_tag=C9F05_RS06985;product=MmcQ/YjbR family DNA-binding protein;protein_id=WP_135370139.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	6253	6906	.	+	.	ID=gene-C9F05_RS06990;Name=nfsB;gbkey=Gene;gene=nfsB;gene_biotype=protein_coding;locus_tag=C9F05_RS06990;old_locus_tag=C9F05_07130
NZ_PYKE01000097.1	Protein Homology	CDS	6253	6906	.	+	0	ID=cds-WP_001529050.1;Parent=gene-C9F05_RS06990;Dbxref=GenBank:WP_001529050.1;Name=WP_001529050.1;Ontology_term=GO:0016491;gbkey=CDS;gene=nfsB;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459570.1;locus_tag=C9F05_RS06990;product=oxygen-insensitive NAD(P)H nitroreductase;protein_id=WP_001529050.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	7106	7555	.	+	.	ID=gene-C9F05_RS06995;Name=C9F05_RS06995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06995;old_locus_tag=C9F05_07135
NZ_PYKE01000097.1	Protein Homology	CDS	7106	7555	.	+	0	ID=cds-WP_001216659.1;Parent=gene-C9F05_RS06995;Dbxref=GenBank:WP_001216659.1;Name=WP_001216659.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459569.1;locus_tag=C9F05_RS06995;product=PTS sugar transporter subunit IIA;protein_id=WP_001216659.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	7533	8003	.	+	.	ID=gene-C9F05_RS07000;Name=C9F05_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07000;old_locus_tag=C9F05_07140
NZ_PYKE01000097.1	Protein Homology	CDS	7533	8003	.	+	0	ID=cds-WP_000594177.1;Parent=gene-C9F05_RS07000;Dbxref=GenBank:WP_000594177.1;Name=WP_000594177.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459568.1;locus_tag=C9F05_RS07000;product=PTS sugar transporter subunit IIB;protein_id=WP_000594177.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	8018	8761	.	+	.	ID=gene-C9F05_RS07005;Name=C9F05_RS07005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07005;old_locus_tag=C9F05_07145
NZ_PYKE01000097.1	Protein Homology	CDS	8018	8761	.	+	0	ID=cds-WP_000927522.1;Parent=gene-C9F05_RS07005;Dbxref=GenBank:WP_000927522.1;Name=WP_000927522.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459567.1;locus_tag=C9F05_RS07005;product=PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC;protein_id=WP_000927522.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	8764	9618	.	+	.	ID=gene-C9F05_RS07010;Name=C9F05_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07010;old_locus_tag=C9F05_07150
NZ_PYKE01000097.1	Protein Homology	CDS	8764	9618	.	+	0	ID=cds-WP_000005802.1;Parent=gene-C9F05_RS07010;Dbxref=GenBank:WP_000005802.1;Name=WP_000005802.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459566.1;locus_tag=C9F05_RS07010;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_000005802.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	9651	10694	.	+	.	ID=gene-C9F05_RS07015;Name=C9F05_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07015;old_locus_tag=C9F05_07155
NZ_PYKE01000097.1	Protein Homology	CDS	9651	10694	.	+	0	ID=cds-WP_023139453.1;Parent=gene-C9F05_RS07015;Dbxref=GenBank:WP_023139453.1;Name=WP_023139453.1;Ontology_term=GO:1901135,GO:0097367;gbkey=CDS;go_function=carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459565.1;locus_tag=C9F05_RS07015;product=glutamine--fructose-6-phosphate aminotransferase;protein_id=WP_023139453.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	10761	11747	.	+	.	ID=gene-C9F05_RS07020;Name=C9F05_RS07020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07020;old_locus_tag=C9F05_07160
NZ_PYKE01000097.1	Protein Homology	CDS	10761	11747	.	+	0	ID=cds-WP_000109360.1;Parent=gene-C9F05_RS07020;Dbxref=GenBank:WP_000109360.1;Name=WP_000109360.1;Ontology_term=GO:1901135,GO:0097367;gbkey=CDS;go_function=carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459564.1;locus_tag=C9F05_RS07020;product=SIS domain-containing protein;protein_id=WP_000109360.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	11875	14604	.	-	.	ID=gene-C9F05_RS07025;Name=C9F05_RS07025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07025;old_locus_tag=C9F05_07165
NZ_PYKE01000097.1	Protein Homology	CDS	11875	14604	.	-	0	ID=cds-WP_001031467.1;Parent=gene-C9F05_RS07025;Dbxref=GenBank:WP_001031467.1;Name=WP_001031467.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459563.1;locus_tag=C9F05_RS07025;product=sigma 54-interacting transcriptional regulator;protein_id=WP_001031467.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	14771	16741	.	-	.	ID=gene-C9F05_RS07030;Name=C9F05_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07030;old_locus_tag=C9F05_07170
NZ_PYKE01000097.1	Protein Homology	CDS	14771	16741	.	-	0	ID=cds-WP_135370140.1;Parent=gene-C9F05_RS07030;Dbxref=GenBank:WP_135370140.1;Name=WP_135370140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459562.1;locus_tag=C9F05_RS07030;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_135370140.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	17052	18299	.	+	.	ID=gene-C9F05_RS07035;Name=C9F05_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07035;old_locus_tag=C9F05_07180
NZ_PYKE01000097.1	Protein Homology	CDS	17052	18299	.	+	0	ID=cds-WP_001156965.1;Parent=gene-C9F05_RS07035;Dbxref=GenBank:WP_001156965.1;Name=WP_001156965.1;Ontology_term=GO:0055085,GO:0008381,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459561.1;locus_tag=C9F05_RS07035;product=mechanosensitive ion channel family protein;protein_id=WP_001156965.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	18341	19735	.	-	.	ID=gene-C9F05_RS07040;Name=pheP;gbkey=Gene;gene=pheP;gene_biotype=protein_coding;locus_tag=C9F05_RS07040;old_locus_tag=C9F05_07185
NZ_PYKE01000097.1	Protein Homology	CDS	18341	19735	.	-	0	ID=cds-WP_023993241.1;Parent=gene-C9F05_RS07040;Dbxref=GenBank:WP_023993241.1;Name=WP_023993241.1;Ontology_term=GO:0006865;gbkey=CDS;gene=pheP;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459560.1;locus_tag=C9F05_RS07040;product=phenylalanine transporter;protein_id=WP_023993241.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	20061	21236	.	+	.	ID=gene-C9F05_RS07045;Name=C9F05_RS07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07045;old_locus_tag=C9F05_07190
NZ_PYKE01000097.1	Protein Homology	CDS	20061	21236	.	+	0	ID=cds-WP_135370141.1;Parent=gene-C9F05_RS07045;Dbxref=GenBank:WP_135370141.1;Name=WP_135370141.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459559.1;locus_tag=C9F05_RS07045;product=DnaJ family molecular chaperone;protein_id=WP_135370141.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	21339	21899	.	-	.	ID=gene-C9F05_RS07050;Name=rclC;gbkey=Gene;gene=rclC;gene_biotype=protein_coding;locus_tag=C9F05_RS07050;old_locus_tag=C9F05_07195
NZ_PYKE01000097.1	Protein Homology	CDS	21339	21899	.	-	0	ID=cds-WP_000362177.1;Parent=gene-C9F05_RS07050;Dbxref=GenBank:WP_000362177.1;Name=WP_000362177.1;gbkey=CDS;gene=rclC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459558.1;locus_tag=C9F05_RS07050;product=reactive chlorine resistance membrane protein RclC;protein_id=WP_000362177.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	21912	22148	.	-	.	ID=gene-C9F05_RS07055;Name=rclB;gbkey=Gene;gene=rclB;gene_biotype=protein_coding;locus_tag=C9F05_RS07055;old_locus_tag=C9F05_07200
NZ_PYKE01000097.1	Protein Homology	CDS	21912	22148	.	-	0	ID=cds-WP_000922170.1;Parent=gene-C9F05_RS07055;Dbxref=GenBank:WP_000922170.1;Name=WP_000922170.1;gbkey=CDS;gene=rclB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459557.1;locus_tag=C9F05_RS07055;product=reactive chlorine resistance periplasmic protein RclB;protein_id=WP_000922170.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	22305	23630	.	-	.	ID=gene-C9F05_RS07060;Name=rclA;gbkey=Gene;gene=rclA;gene_biotype=protein_coding;locus_tag=C9F05_RS07060;old_locus_tag=C9F05_07210
NZ_PYKE01000097.1	Protein Homology	CDS	22305	23630	.	-	0	ID=cds-WP_135370142.1;Parent=gene-C9F05_RS07060;Dbxref=GenBank:WP_135370142.1;Name=WP_135370142.1;gbkey=CDS;gene=rclA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459556.1;locus_tag=C9F05_RS07060;product=reactive chlorine resistance oxidoreductase RclA;protein_id=WP_135370142.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	gene	23846	24700	.	+	.	ID=gene-C9F05_RS07065;Name=rclR;gbkey=Gene;gene=rclR;gene_biotype=protein_coding;locus_tag=C9F05_RS07065;old_locus_tag=C9F05_07215
NZ_PYKE01000097.1	Protein Homology	CDS	23846	24700	.	+	0	ID=cds-WP_135370143.1;Parent=gene-C9F05_RS07065;Dbxref=GenBank:WP_135370143.1;Name=WP_135370143.1;gbkey=CDS;gene=rclR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459555.1;locus_tag=C9F05_RS07065;product=reactive chlorine-specific transcriptional regulator RclR;protein_id=WP_135370143.1;transl_table=11
NZ_PYKE01000097.1	RefSeq	pseudogene	24751	24852	.	-	.	ID=gene-C9F05_RS07070;Name=C9F05_RS07070;end_range=24852,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS07070;old_locus_tag=C9F05_07220;partial=true;pseudo=true
NZ_PYKE01000097.1	Protein Homology	CDS	24751	24852	.	-	0	ID=cds-C9F05_RS07070;Parent=gene-C9F05_RS07070;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=24852,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000574020.1;locus_tag=C9F05_RS07070;partial=true;product=cation transporter;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000294.1 1 2564
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000294.1	RefSeq	region	1	2564	.	+	.	ID=NZ_PYKE01000294.1:1..2564;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000294.1	RefSeq	gene	26	1237	.	+	.	ID=gene-C9F05_RS19875;Name=ompC;gbkey=Gene;gene=ompC;gene_biotype=protein_coding;locus_tag=C9F05_RS19875;old_locus_tag=C9F05_20430
NZ_PYKE01000294.1	Protein Homology	CDS	26	1237	.	+	0	ID=cds-WP_135370572.1;Parent=gene-C9F05_RS19875;Dbxref=GenBank:WP_135370572.1;Name=WP_135370572.1;Ontology_term=GO:0034220,GO:0015288;gbkey=CDS;gene=ompC;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460946.1;locus_tag=C9F05_RS19875;product=porin OmpC;protein_id=WP_135370572.1;transl_table=11
NZ_PYKE01000294.1	RefSeq	gene	1497	1685	.	-	.	ID=gene-C9F05_RS19880;Name=ymcF;gbkey=Gene;gene=ymcF;gene_biotype=protein_coding;locus_tag=C9F05_RS19880;old_locus_tag=C9F05_20435
NZ_PYKE01000294.1	Protein Homology	CDS	1497	1685	.	-	0	ID=cds-WP_024131109.1;Parent=gene-C9F05_RS19880;Dbxref=GenBank:WP_024131109.1;Name=WP_024131109.1;gbkey=CDS;gene=ymcF;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518761.1;locus_tag=C9F05_RS19880;product=cold shock small protein YmcF;protein_id=WP_024131109.1;transl_table=11
NZ_PYKE01000294.1	RefSeq	gene	1696	1908	.	-	.	ID=gene-C9F05_RS19885;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=C9F05_RS19885;old_locus_tag=C9F05_20440
NZ_PYKE01000294.1	Protein Homology	CDS	1696	1908	.	-	0	ID=cds-WP_000208509.1;Parent=gene-C9F05_RS19885;Dbxref=GenBank:WP_000208509.1;Name=WP_000208509.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460947.1;locus_tag=C9F05_RS19885;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_000208509.1;transl_table=11
##sequence-region NZ_PYKE01000238.1 1 2527
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000238.1	RefSeq	region	1	2527	.	+	.	ID=NZ_PYKE01000238.1:1..2527;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000238.1	RefSeq	gene	1	2290	.	-	.	ID=gene-C9F05_RS15420;Name=C9F05_RS15420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15420;old_locus_tag=C9F05_15855;partial=true;start_range=.,1
NZ_PYKE01000238.1	Protein Homology	CDS	1	2290	.	-	0	ID=cds-WP_217810228.1;Parent=gene-C9F05_RS15420;Dbxref=GenBank:WP_217810228.1;Name=WP_217810228.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835061.1;locus_tag=C9F05_RS15420;partial=true;product=autotransporter-associated beta strand repeat-containing protein;protein_id=WP_217810228.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000005.1 1 2503
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000005.1	RefSeq	region	1	2503	.	+	.	ID=NZ_PYKE01000005.1:1..2503;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000005.1	RefSeq	gene	190	1254	.	+	.	ID=gene-C9F05_RS00295;Name=ulaG;gbkey=Gene;gene=ulaG;gene_biotype=protein_coding;locus_tag=C9F05_RS00295;old_locus_tag=C9F05_00295
NZ_PYKE01000005.1	Protein Homology	CDS	190	1254	.	+	0	ID=cds-WP_000049161.1;Parent=gene-C9F05_RS00295;Dbxref=GenBank:WP_000049161.1;Name=WP_000049161.1;Ontology_term=GO:0019854,GO:0030145,GO:0035460;gbkey=CDS;gene=ulaG;go_function=manganese ion binding|0030145||IEA,L-ascorbate 6-phosphate lactonase activity|0035460||IEA;go_process=L-ascorbic acid catabolic process|0019854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003856017.1;locus_tag=C9F05_RS00295;product=L-ascorbate 6-phosphate lactonase;protein_id=WP_000049161.1;transl_table=11
NZ_PYKE01000005.1	RefSeq	gene	1359	2114	.	+	.	ID=gene-C9F05_RS00300;Name=ulaR;gbkey=Gene;gene=ulaR;gene_biotype=protein_coding;locus_tag=C9F05_RS00300;old_locus_tag=C9F05_00300
NZ_PYKE01000005.1	Protein Homology	CDS	1359	2114	.	+	0	ID=cds-WP_000133618.1;Parent=gene-C9F05_RS00300;Dbxref=GenBank:WP_000133618.1;Name=WP_000133618.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ulaR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463242.1;locus_tag=C9F05_RS00300;product=HTH-type transcriptional regulator UlaR;protein_id=WP_000133618.1;transl_table=11
NZ_PYKE01000005.1	RefSeq	gene	2111	2503	.	-	.	ID=gene-C9F05_RS00305;Name=yjfP;end_range=2503,.;gbkey=Gene;gene=yjfP;gene_biotype=protein_coding;locus_tag=C9F05_RS00305;old_locus_tag=C9F05_00305;partial=true
NZ_PYKE01000005.1	Protein Homology	CDS	2111	2503	.	-	0	ID=cds-WP_135369911.1;Parent=gene-C9F05_RS00305;Dbxref=GenBank:WP_135369911.1;Name=WP_135369911.1;Ontology_term=GO:0006508,GO:0008236;end_range=2503,.;gbkey=CDS;gene=yjfP;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463241.1;locus_tag=C9F05_RS00305;partial=true;product=esterase;protein_id=WP_135369911.1;transl_table=11
##sequence-region NZ_PYKE01000122.1 1 25111
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000122.1	RefSeq	region	1	25111	.	+	.	ID=NZ_PYKE01000122.1:1..25111;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000122.1	RefSeq	gene	190	2763	.	-	.	ID=gene-C9F05_RS08790;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=C9F05_RS08790;old_locus_tag=C9F05_09025
NZ_PYKE01000122.1	Protein Homology	CDS	190	2763	.	-	0	ID=cds-WP_001235092.1;Parent=gene-C9F05_RS08790;Dbxref=GenBank:WP_001235092.1;Name=WP_001235092.1;Ontology_term=GO:0009408,GO:0042026,GO:0005524,GO:0016887;gbkey=CDS;gene=clpB;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=response to heat|0009408||IEA,protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002461515.1;locus_tag=C9F05_RS08790;product=ATP-dependent chaperone ClpB;protein_id=WP_001235092.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	2893	3624	.	-	.	ID=gene-C9F05_RS08795;Name=yfiH;gbkey=Gene;gene=yfiH;gene_biotype=protein_coding;locus_tag=C9F05_RS08795;old_locus_tag=C9F05_09030
NZ_PYKE01000122.1	Protein Homology	CDS	2893	3624	.	-	0	ID=cds-WP_000992639.1;Parent=gene-C9F05_RS08795;Dbxref=GenBank:WP_000992639.1;Name=WP_000992639.1;Ontology_term=GO:0004000,GO:0004731,GO:0042803;gbkey=CDS;gene=yfiH;go_function=adenosine deaminase activity|0004000||IEA,purine-nucleoside phosphorylase activity|0004731||IEA,protein homodimerization activity|0042803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461592.1;locus_tag=C9F05_RS08795;product=purine nucleoside phosphorylase YfiH;protein_id=WP_000992639.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	3621	4601	.	-	.	ID=gene-C9F05_RS08800;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=C9F05_RS08800;old_locus_tag=C9F05_09035
NZ_PYKE01000122.1	Protein Homology	CDS	3621	4601	.	-	0	ID=cds-WP_000079130.1;Parent=gene-C9F05_RS08800;Dbxref=GenBank:WP_000079130.1;Name=WP_000079130.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017383977.1;locus_tag=C9F05_RS08800;product=23S rRNA pseudouridine(1911/1915/1917) synthase RluD;protein_id=WP_000079130.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	4733	5470	.	+	.	ID=gene-C9F05_RS08805;Name=bamD;gbkey=Gene;gene=bamD;gene_biotype=protein_coding;locus_tag=C9F05_RS08805;old_locus_tag=C9F05_09040
NZ_PYKE01000122.1	Protein Homology	CDS	4733	5470	.	+	0	ID=cds-WP_000197660.1;Parent=gene-C9F05_RS08805;Dbxref=GenBank:WP_000197660.1;Name=WP_000197660.1;gbkey=CDS;gene=bamD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461594.1;locus_tag=C9F05_RS08805;product=outer membrane protein assembly factor BamD;protein_id=WP_000197660.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	5742	6080	.	+	.	ID=gene-C9F05_RS08810;Name=raiA;gbkey=Gene;gene=raiA;gene_biotype=protein_coding;locus_tag=C9F05_RS08810;old_locus_tag=C9F05_09045
NZ_PYKE01000122.1	Protein Homology	CDS	5742	6080	.	+	0	ID=cds-WP_000178449.1;Parent=gene-C9F05_RS08810;Dbxref=GenBank:WP_000178449.1;Name=WP_000178449.1;gbkey=CDS;gene=raiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461595.1;locus_tag=C9F05_RS08810;product=ribosome-associated translation inhibitor RaiA;protein_id=WP_000178449.1;transl_table=11
NZ_PYKE01000122.1	cmsearch	sequence_feature	6183	6308	.	+	.	ID=id-NZ_PYKE01000122.1:6183..6308;Dbxref=RFAM:RF01859;Note=Phe leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_PYKE01000122.1	RefSeq	gene	6184	6231	.	+	.	ID=gene-C9F05_RS08815;Name=pheL;gbkey=Gene;gene=pheL;gene_biotype=protein_coding;locus_tag=C9F05_RS08815;old_locus_tag=C9F05_09050
NZ_PYKE01000122.1	Protein Homology	CDS	6184	6231	.	+	0	ID=cds-WP_010989056.1;Parent=gene-C9F05_RS08815;Dbxref=GenBank:WP_010989056.1;Name=WP_010989056.1;Ontology_term=GO:0031556;gbkey=CDS;gene=pheL;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_449055.1;locus_tag=C9F05_RS08815;product=pheA operon leader peptide PheL;protein_id=WP_010989056.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	6331	7491	.	+	.	ID=gene-C9F05_RS08820;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=C9F05_RS08820;old_locus_tag=C9F05_09055
NZ_PYKE01000122.1	Protein Homology	CDS	6331	7491	.	+	0	ID=cds-WP_000200082.1;Parent=gene-C9F05_RS08820;Dbxref=GenBank:WP_000200082.1;Name=WP_000200082.1;Ontology_term=GO:0009094,GO:0046417,GO:0004106,GO:0004664;gbkey=CDS;gene=pheA;go_function=chorismate mutase activity|0004106||IEA,prephenate dehydratase activity|0004664||IEA;go_process=L-phenylalanine biosynthetic process|0009094||IEA,chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461597.1;locus_tag=C9F05_RS08820;product=bifunctional chorismate mutase/prephenate dehydratase;protein_id=WP_000200082.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	7452	8360	.	-	.	ID=gene-C9F05_RS08825;Name=C9F05_RS08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08825;old_locus_tag=C9F05_09060
NZ_PYKE01000122.1	Protein Homology	CDS	7452	8360	.	-	0	ID=cds-WP_000210994.1;Parent=gene-C9F05_RS08825;Dbxref=GenBank:WP_000210994.1;Name=WP_000210994.1;Ontology_term=GO:0005509,GO:0016787,GO:0046872;gbkey=CDS;go_function=calcium ion binding|0005509||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461598.1;locus_tag=C9F05_RS08825;product=SMP-30/gluconolactonase/LRE family protein;protein_id=WP_000210994.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	8418	9539	.	-	.	ID=gene-C9F05_RS08830;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=C9F05_RS08830;old_locus_tag=C9F05_09065
NZ_PYKE01000122.1	Protein Homology	CDS	8418	9539	.	-	0	ID=cds-WP_000225191.1;Parent=gene-C9F05_RS08830;Dbxref=GenBank:WP_000225191.1;Name=WP_000225191.1;Ontology_term=GO:0006571,GO:0046417,GO:0004106,GO:0004665,GO:0008977;gbkey=CDS;gene=tyrA;go_function=chorismate mutase activity|0004106||IEA,prephenate dehydrogenase (NADP+) activity|0004665||IEA,prephenate dehydrogenase (NAD+) activity|0008977||IEA;go_process=tyrosine biosynthetic process|0006571||IEA,chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461599.1;locus_tag=C9F05_RS08830;product=bifunctional chorismate mutase/prephenate dehydrogenase;protein_id=WP_000225191.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	9549	10619	.	-	.	ID=gene-C9F05_RS08835;Name=aroF;gbkey=Gene;gene=aroF;gene_biotype=protein_coding;locus_tag=C9F05_RS08835;old_locus_tag=C9F05_09070
NZ_PYKE01000122.1	Protein Homology	CDS	9549	10619	.	-	0	ID=cds-WP_001168062.1;Parent=gene-C9F05_RS08835;Dbxref=GenBank:WP_001168062.1;Name=WP_001168062.1;gbkey=CDS;gene=aroF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461600.1;locus_tag=C9F05_RS08835;product=3-deoxy-7-phosphoheptulonate synthase AroF;protein_id=WP_001168062.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	11060	11578	.	+	.	ID=gene-C9F05_RS08840;Name=C9F05_RS08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08840;old_locus_tag=C9F05_09075
NZ_PYKE01000122.1	Protein Homology	CDS	11060	11578	.	+	0	ID=cds-WP_001212379.1;Parent=gene-C9F05_RS08840;Dbxref=GenBank:WP_001212379.1;Name=WP_001212379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461601.1;locus_tag=C9F05_RS08840;product=YfiR family protein;protein_id=WP_001212379.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	11571	12791	.	+	.	ID=gene-C9F05_RS08845;Name=dgcN;gbkey=Gene;gene=dgcN;gene_biotype=protein_coding;locus_tag=C9F05_RS08845;old_locus_tag=C9F05_09080
NZ_PYKE01000122.1	Protein Homology	CDS	11571	12791	.	+	0	ID=cds-WP_001030985.1;Parent=gene-C9F05_RS08845;Dbxref=GenBank:WP_001030985.1;Name=WP_001030985.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;gene=dgcN;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461602.1;locus_tag=C9F05_RS08845;product=diguanylate cyclase DgcN;protein_id=WP_001030985.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	12948	13295	.	-	.	ID=gene-C9F05_RS08850;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=C9F05_RS08850;old_locus_tag=C9F05_09085
NZ_PYKE01000122.1	Protein Homology	CDS	12948	13295	.	-	0	ID=cds-WP_000065257.1;Parent=gene-C9F05_RS08850;Dbxref=GenBank:WP_000065257.1;Name=WP_000065257.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012768745.1;locus_tag=C9F05_RS08850;product=50S ribosomal protein L19;protein_id=WP_000065257.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	13336	14103	.	-	.	ID=gene-C9F05_RS08855;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=C9F05_RS08855;old_locus_tag=C9F05_09090
NZ_PYKE01000122.1	Protein Homology	CDS	13336	14103	.	-	0	ID=cds-WP_000469807.1;Parent=gene-C9F05_RS08855;Dbxref=GenBank:WP_000469807.1;Name=WP_000469807.1;Ontology_term=GO:0030488,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N1)-methyltransferase activity|0052906||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461604.1;locus_tag=C9F05_RS08855;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_000469807.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	14148	14696	.	-	.	ID=gene-C9F05_RS08860;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=C9F05_RS08860;old_locus_tag=C9F05_09095
NZ_PYKE01000122.1	Protein Homology	CDS	14148	14696	.	-	0	ID=cds-WP_000043266.1;Parent=gene-C9F05_RS08860;Dbxref=GenBank:WP_000043266.1;Name=WP_000043266.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0043022,GO:0005840;gbkey=CDS;gene=rimM;go_component=ribosome|0005840||IEA;go_function=ribosome binding|0043022||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000043333.1;locus_tag=C9F05_RS08860;product=ribosome maturation factor RimM;protein_id=WP_000043266.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	14715	14963	.	-	.	ID=gene-C9F05_RS08865;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=C9F05_RS08865;old_locus_tag=C9F05_09100
NZ_PYKE01000122.1	Protein Homology	CDS	14715	14963	.	-	0	ID=cds-WP_000256453.1;Parent=gene-C9F05_RS08865;Dbxref=GenBank:WP_000256453.1;Name=WP_000256453.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000256453.1;locus_tag=C9F05_RS08865;product=30S ribosomal protein S16;protein_id=WP_000256453.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	15216	16577	.	-	.	ID=gene-C9F05_RS08870;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=C9F05_RS08870;old_locus_tag=C9F05_09105
NZ_PYKE01000122.1	Protein Homology	CDS	15216	16577	.	-	0	ID=cds-WP_000460052.1;Parent=gene-C9F05_RS08870;Dbxref=GenBank:WP_000460052.1;Name=WP_000460052.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0005525,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA,GTP binding|0005525||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130432.1;locus_tag=C9F05_RS08870;product=signal recognition particle protein;protein_id=WP_000460052.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	16743	17534	.	+	.	ID=gene-C9F05_RS08880;Name=C9F05_RS08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08880;old_locus_tag=C9F05_09110
NZ_PYKE01000122.1	Protein Homology	CDS	16743	17534	.	+	0	ID=cds-WP_001537507.1;Parent=gene-C9F05_RS08880;Dbxref=GenBank:WP_001537507.1;Name=WP_001537507.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461608.1;locus_tag=C9F05_RS08880;product=cytochrome C assembly family protein;protein_id=WP_001537507.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	17554	18840	.	+	.	ID=gene-C9F05_RS08885;Name=C9F05_RS08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08885;old_locus_tag=C9F05_09115
NZ_PYKE01000122.1	Protein Homology	CDS	17554	18840	.	+	0	ID=cds-WP_127172650.1;Parent=gene-C9F05_RS08885;Dbxref=GenBank:WP_127172650.1;Name=WP_127172650.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026171.3;locus_tag=C9F05_RS08885;product=HlyC/CorC family transporter;protein_id=WP_127172650.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	18961	19566	.	+	.	ID=gene-C9F05_RS08890;Name=C9F05_RS08890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08890;old_locus_tag=C9F05_09120
NZ_PYKE01000122.1	Protein Homology	CDS	18961	19566	.	+	0	ID=cds-WP_001287923.1;Parent=gene-C9F05_RS08890;Dbxref=GenBank:WP_001287923.1;Name=WP_001287923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461610.1;locus_tag=C9F05_RS08890;product=DUF6630 family protein;protein_id=WP_001287923.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	19601	20191	.	-	.	ID=gene-C9F05_RS08895;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=C9F05_RS08895;old_locus_tag=C9F05_09125
NZ_PYKE01000122.1	Protein Homology	CDS	19601	20191	.	-	0	ID=cds-WP_001518875.1;Parent=gene-C9F05_RS08895;Dbxref=GenBank:WP_001518875.1;Name=WP_001518875.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461611.1;locus_tag=C9F05_RS08895;product=nucleotide exchange factor GrpE;protein_id=WP_001518875.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	20315	21193	.	+	.	ID=gene-C9F05_RS08905;Name=nadK;gbkey=Gene;gene=nadK;gene_biotype=protein_coding;locus_tag=C9F05_RS08905;old_locus_tag=C9F05_09135
NZ_PYKE01000122.1	Protein Homology	CDS	20315	21193	.	+	0	ID=cds-WP_001059155.1;Parent=gene-C9F05_RS08905;Dbxref=GenBank:WP_001059155.1;Name=WP_001059155.1;Ontology_term=GO:0003951;gbkey=CDS;gene=nadK;go_function=NAD+ kinase activity|0003951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239499.1;locus_tag=C9F05_RS08905;product=NAD(+) kinase;protein_id=WP_001059155.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	21279	22940	.	+	.	ID=gene-C9F05_RS08910;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=C9F05_RS08910;old_locus_tag=C9F05_09140
NZ_PYKE01000122.1	Protein Homology	CDS	21279	22940	.	+	0	ID=cds-WP_000880965.1;Parent=gene-C9F05_RS08910;Dbxref=GenBank:WP_000880965.1;Name=WP_000880965.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461614.1;locus_tag=C9F05_RS08910;product=DNA repair protein RecN;protein_id=WP_000880965.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	23089	23427	.	+	.	ID=gene-C9F05_RS08915;Name=bamE;gbkey=Gene;gene=bamE;gene_biotype=protein_coding;locus_tag=C9F05_RS08915;old_locus_tag=C9F05_09145
NZ_PYKE01000122.1	Protein Homology	CDS	23089	23427	.	+	0	ID=cds-WP_001203445.1;Parent=gene-C9F05_RS08915;Dbxref=GenBank:WP_001203445.1;Name=WP_001203445.1;gbkey=CDS;gene=bamE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461615.1;locus_tag=C9F05_RS08915;product=outer membrane protein assembly factor BamE;protein_id=WP_001203445.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	23593	23883	.	-	.	ID=gene-C9F05_RS08920;Name=C9F05_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08920;old_locus_tag=C9F05_09150
NZ_PYKE01000122.1	Protein Homology	CDS	23593	23883	.	-	0	ID=cds-WP_001112990.1;Parent=gene-C9F05_RS08920;Dbxref=GenBank:WP_001112990.1;Name=WP_001112990.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461616.1;locus_tag=C9F05_RS08920;product=RnfH family protein;protein_id=WP_001112990.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	23873	24310	.	-	.	ID=gene-C9F05_RS08925;Name=C9F05_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08925;old_locus_tag=C9F05_09155
NZ_PYKE01000122.1	Protein Homology	CDS	23873	24310	.	-	0	ID=cds-WP_001537508.1;Parent=gene-C9F05_RS08925;Dbxref=GenBank:WP_001537508.1;Name=WP_001537508.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001543334.1;locus_tag=C9F05_RS08925;product=type II toxin-antitoxin system RatA family toxin;protein_id=WP_001537508.1;transl_table=11
NZ_PYKE01000122.1	RefSeq	gene	24499	24981	.	+	.	ID=gene-C9F05_RS08930;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=C9F05_RS08930;old_locus_tag=C9F05_09160
NZ_PYKE01000122.1	Protein Homology	CDS	24499	24981	.	+	0	ID=cds-WP_001518569.1;Parent=gene-C9F05_RS08930;Dbxref=GenBank:WP_001518569.1;Name=WP_001518569.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461618.1;locus_tag=C9F05_RS08930;product=SsrA-binding protein SmpB;protein_id=WP_001518569.1;transl_table=11
##sequence-region NZ_PYKE01000336.1 1 2471
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000336.1	RefSeq	region	1	2471	.	+	.	ID=NZ_PYKE01000336.1:1..2471;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000336.1	RefSeq	gene	69	593	.	+	.	ID=gene-C9F05_RS22650;Name=C9F05_RS22650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22650;old_locus_tag=C9F05_23245
NZ_PYKE01000336.1	Protein Homology	CDS	69	593	.	+	0	ID=cds-WP_001219023.1;Parent=gene-C9F05_RS22650;Dbxref=GenBank:WP_001219023.1;Name=WP_001219023.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460952.1;locus_tag=C9F05_RS22650;product=peptidase;protein_id=WP_001219023.1;transl_table=11
NZ_PYKE01000336.1	RefSeq	pseudogene	1068	1939	.	+	.	ID=gene-C9F05_RS22660;Name=C9F05_RS22660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS22660;old_locus_tag=C9F05_23255;pseudo=true
NZ_PYKE01000336.1	Protein Homology	CDS	1068	1939	.	+	0	ID=cds-C9F05_RS22660;Parent=gene-C9F05_RS22660;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000517119.1;locus_tag=C9F05_RS22660;product=integrase domain-containing protein;pseudo=true;transl_table=11
NZ_PYKE01000336.1	RefSeq	pseudogene	1963	2202	.	+	.	ID=gene-C9F05_RS22665;Name=C9F05_RS22665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS22665;old_locus_tag=C9F05_23260;partial=true;pseudo=true;start_range=.,1963
NZ_PYKE01000336.1	Protein Homology	CDS	1963	2202	.	+	0	ID=cds-C9F05_RS22665;Parent=gene-C9F05_RS22665;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000950586.1;locus_tag=C9F05_RS22665;partial=true;product=transposase;pseudo=true;start_range=.,1963;transl_table=11
##sequence-region NZ_PYKE01000322.1 1 2458
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000322.1	RefSeq	region	1	2458	.	+	.	ID=NZ_PYKE01000322.1:1..2458;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000322.1	RefSeq	gene	35	1336	.	+	.	ID=gene-C9F05_RS22180;Name=C9F05_RS22180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22180;old_locus_tag=C9F05_22765
NZ_PYKE01000322.1	Protein Homology	CDS	35	1336	.	+	0	ID=cds-WP_135370639.1;Parent=gene-C9F05_RS22180;Dbxref=GenBank:WP_135370639.1;Name=WP_135370639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459747.1;locus_tag=C9F05_RS22180;product=oxalacetate decarboxylase subunit beta;protein_id=WP_135370639.1;transl_table=11
NZ_PYKE01000322.1	RefSeq	gene	1455	2153	.	+	.	ID=gene-C9F05_RS22185;Name=C9F05_RS22185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22185;old_locus_tag=C9F05_22770
NZ_PYKE01000322.1	Protein Homology	CDS	1455	2153	.	+	0	ID=cds-WP_001005993.1;Parent=gene-C9F05_RS22185;Dbxref=GenBank:WP_001005993.1;Name=WP_001005993.1;Ontology_term=GO:0016310,GO:0005524,GO:0046917;gbkey=CDS;go_function=ATP binding|0005524||IEA,triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459748.1;locus_tag=C9F05_RS22185;product=triphosphoribosyl-dephospho-CoA synthase;protein_id=WP_001005993.1;transl_table=11
##sequence-region NZ_PYKE01000328.1 1 2448
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000328.1	RefSeq	region	1	2448	.	+	.	ID=NZ_PYKE01000328.1:1..2448;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000328.1	RefSeq	gene	202	924	.	-	.	ID=gene-C9F05_RS22230;Name=fimY;gbkey=Gene;gene=fimY;gene_biotype=protein_coding;locus_tag=C9F05_RS22230;old_locus_tag=C9F05_22815
NZ_PYKE01000328.1	Protein Homology	CDS	202	924	.	-	0	ID=cds-WP_135370643.1;Parent=gene-C9F05_RS22230;Dbxref=GenBank:WP_135370643.1;Name=WP_135370643.1;gbkey=CDS;gene=fimY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459545.1;locus_tag=C9F05_RS22230;product=fimbria biosynthesis regulator FimY;protein_id=WP_135370643.1;transl_table=11
NZ_PYKE01000328.1	RefSeq	gene	943	1254	.	-	.	ID=gene-C9F05_RS22235;Name=C9F05_RS22235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22235;old_locus_tag=C9F05_22820
NZ_PYKE01000328.1	Protein Homology	CDS	943	1254	.	-	0	ID=cds-WP_023182315.1;Parent=gene-C9F05_RS22235;Dbxref=GenBank:WP_023182315.1;Name=WP_023182315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459546.1;locus_tag=C9F05_RS22235;product=hypothetical protein;protein_id=WP_023182315.1;transl_table=11
NZ_PYKE01000328.1	RefSeq	gene	1416	2012	.	-	.	ID=gene-C9F05_RS22240;Name=fimW;gbkey=Gene;gene=fimW;gene_biotype=protein_coding;locus_tag=C9F05_RS22240;old_locus_tag=C9F05_22825
NZ_PYKE01000328.1	Protein Homology	CDS	1416	2012	.	-	0	ID=cds-WP_001523348.1;Parent=gene-C9F05_RS22240;Dbxref=GenBank:WP_001523348.1;Name=WP_001523348.1;gbkey=CDS;gene=fimW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459547.1;locus_tag=C9F05_RS22240;product=fimbria biosynthesis transcriptional regulator FimW;protein_id=WP_001523348.1;transl_table=11
NZ_PYKE01000328.1	RefSeq	gene	2267	2343	.	+	.	ID=gene-C9F05_RS22250;Name=C9F05_RS22250;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS22250;old_locus_tag=C9F05_22835
NZ_PYKE01000328.1	tRNAscan-SE	tRNA	2267	2343	.	+	.	ID=rna-C9F05_RS22250;Parent=gene-C9F05_RS22250;anticodon=(pos:2301..2303);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS22250;product=tRNA-Arg
NZ_PYKE01000328.1	tRNAscan-SE	exon	2267	2343	.	+	.	ID=exon-C9F05_RS22250-1;Parent=rna-C9F05_RS22250;anticodon=(pos:2301..2303);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS22250;product=tRNA-Arg
##sequence-region NZ_PYKE01000185.1 1 2435
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000185.1	RefSeq	region	1	2435	.	+	.	ID=NZ_PYKE01000185.1:1..2435;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000185.1	RefSeq	gene	1	117	.	+	.	ID=gene-C9F05_RS12325;Name=C9F05_RS12325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12325;old_locus_tag=C9F05_12675;partial=true;start_range=.,1
NZ_PYKE01000185.1	Protein Homology	CDS	1	117	.	+	0	ID=cds-WP_167854908.1;Parent=gene-C9F05_RS12325;Dbxref=GenBank:WP_167854908.1;Name=WP_167854908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460684.1;locus_tag=C9F05_RS12325;partial=true;product=hypothetical protein;protein_id=WP_167854908.1;start_range=.,1;transl_table=11
NZ_PYKE01000185.1	RefSeq	gene	127	1320	.	+	.	ID=gene-C9F05_RS12330;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=C9F05_RS12330;old_locus_tag=C9F05_12680
NZ_PYKE01000185.1	Protein Homology	CDS	127	1320	.	+	0	ID=cds-WP_001728861.1;Parent=gene-C9F05_RS12330;Dbxref=GenBank:WP_001728861.1;Name=WP_001728861.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpB;go_function=tryptophan synthase activity|0004834||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460685.1;locus_tag=C9F05_RS12330;product=tryptophan synthase subunit beta;protein_id=WP_001728861.1;transl_table=11
NZ_PYKE01000185.1	RefSeq	gene	1320	2126	.	+	.	ID=gene-C9F05_RS12335;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=C9F05_RS12335;old_locus_tag=C9F05_12685
NZ_PYKE01000185.1	Protein Homology	CDS	1320	2126	.	+	0	ID=cds-WP_000443029.1;Parent=gene-C9F05_RS12335;Dbxref=GenBank:WP_000443029.1;Name=WP_000443029.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpA;go_function=tryptophan synthase activity|0004834||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460686.1;locus_tag=C9F05_RS12335;product=tryptophan synthase subunit alpha;protein_id=WP_000443029.1;transl_table=11
##sequence-region NZ_PYKE01000196.1 1 24932
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000196.1	RefSeq	region	1	24932	.	+	.	ID=NZ_PYKE01000196.1:1..24932;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000196.1	RefSeq	pseudogene	1	149	.	-	.	ID=gene-C9F05_RS12770;Name=C9F05_RS12770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS12770;old_locus_tag=C9F05_13140;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000196.1	Protein Homology	CDS	1	149	.	-	0	ID=cds-C9F05_RS12770;Parent=gene-C9F05_RS12770;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461631.1;locus_tag=C9F05_RS12770;partial=true;product=phage tail protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	119	676	.	+	.	ID=gene-C9F05_RS12775;Name=fin;gbkey=Gene;gene=fin;gene_biotype=protein_coding;locus_tag=C9F05_RS12775;old_locus_tag=C9F05_13145
NZ_PYKE01000196.1	Protein Homology	CDS	119	676	.	+	0	ID=cds-WP_001165558.1;Parent=gene-C9F05_RS12775;Dbxref=GenBank:WP_001165558.1;Name=WP_001165558.1;gbkey=CDS;gene=fin;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461630.1;locus_tag=C9F05_RS12775;product=serine-type DNA invertase Fin;protein_id=WP_001165558.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	779	1951	.	+	.	ID=gene-C9F05_RS12780;Name=C9F05_RS12780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12780;old_locus_tag=C9F05_13150
NZ_PYKE01000196.1	Protein Homology	CDS	779	1951	.	+	0	ID=cds-WP_000046109.1;Parent=gene-C9F05_RS12780;Dbxref=GenBank:WP_000046109.1;Name=WP_000046109.1;Ontology_term=GO:0099000,GO:0098027;gbkey=CDS;go_component=virus tail%2C sheath|0098027||IEA;go_process=symbiont genome ejection through host cell envelope%2C contractile tail mechanism|0099000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461629.1;locus_tag=C9F05_RS12780;product=phage tail sheath protein;protein_id=WP_000046109.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	1961	2476	.	+	.	ID=gene-C9F05_RS12785;Name=C9F05_RS12785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12785;old_locus_tag=C9F05_13155
NZ_PYKE01000196.1	Protein Homology	CDS	1961	2476	.	+	0	ID=cds-WP_001207653.1;Parent=gene-C9F05_RS12785;Dbxref=GenBank:WP_001207653.1;Name=WP_001207653.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461628.1;locus_tag=C9F05_RS12785;product=phage major tail tube protein;protein_id=WP_001207653.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	2531	2833	.	+	.	ID=gene-C9F05_RS12790;Name=C9F05_RS12790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12790;old_locus_tag=C9F05_13160
NZ_PYKE01000196.1	Protein Homology	CDS	2531	2833	.	+	0	ID=cds-WP_001280967.1;Parent=gene-C9F05_RS12790;Dbxref=GenBank:WP_001280967.1;Name=WP_001280967.1;Ontology_term=GO:0098003;gbkey=CDS;go_process=viral tail assembly|0098003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461627.1;locus_tag=C9F05_RS12790;product=phage tail assembly protein;protein_id=WP_001280967.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	2848	2967	.	+	.	ID=gene-C9F05_RS12795;Name=C9F05_RS12795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12795;old_locus_tag=C9F05_13165
NZ_PYKE01000196.1	Protein Homology	CDS	2848	2967	.	+	0	ID=cds-WP_000763317.1;Parent=gene-C9F05_RS12795;Dbxref=GenBank:WP_000763317.1;Name=WP_000763317.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461626.1;locus_tag=C9F05_RS12795;product=GpE family phage tail protein;protein_id=WP_000763317.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	2960	5767	.	+	.	ID=gene-C9F05_RS12800;Name=C9F05_RS12800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12800;old_locus_tag=C9F05_13170
NZ_PYKE01000196.1	Protein Homology	CDS	2960	5767	.	+	0	ID=cds-WP_001282766.1;Parent=gene-C9F05_RS12800;Dbxref=GenBank:WP_001282766.1;Name=WP_001282766.1;Ontology_term=GO:0016032,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461625.1;locus_tag=C9F05_RS12800;product=phage tail tape measure protein;protein_id=WP_001282766.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	5764	6249	.	+	.	ID=gene-C9F05_RS12805;Name=C9F05_RS12805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12805;old_locus_tag=C9F05_13175
NZ_PYKE01000196.1	Protein Homology	CDS	5764	6249	.	+	0	ID=cds-WP_135370336.1;Parent=gene-C9F05_RS12805;Dbxref=GenBank:WP_135370336.1;Name=WP_135370336.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461624.1;locus_tag=C9F05_RS12805;product=phage tail protein;protein_id=WP_135370336.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	6246	7346	.	+	.	ID=gene-C9F05_RS12810;Name=C9F05_RS12810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12810;old_locus_tag=C9F05_13180
NZ_PYKE01000196.1	Protein Homology	CDS	6246	7346	.	+	0	ID=cds-WP_135370337.1;Parent=gene-C9F05_RS12810;Dbxref=GenBank:WP_135370337.1;Name=WP_135370337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461623.1;locus_tag=C9F05_RS12810;product=phage late control D family protein;protein_id=WP_135370337.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	7415	7633	.	+	.	ID=gene-C9F05_RS12815;Name=C9F05_RS12815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12815;old_locus_tag=C9F05_13185
NZ_PYKE01000196.1	Protein Homology	CDS	7415	7633	.	+	0	ID=cds-WP_000980498.1;Parent=gene-C9F05_RS12815;Dbxref=GenBank:WP_000980498.1;Name=WP_000980498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461622.1;locus_tag=C9F05_RS12815;product=ogr/Delta-like zinc finger family protein;protein_id=WP_000980498.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	7751	8113	.	-	.	ID=gene-C9F05_RS12820;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=C9F05_RS12820;old_locus_tag=C9F05_13190
NZ_PYKE01000196.1	cmsearch	tmRNA	7751	8113	.	-	.	ID=rna-C9F05_RS12820;Parent=gene-C9F05_RS12820;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS12820;product=transfer-messenger RNA
NZ_PYKE01000196.1	cmsearch	exon	7751	8113	.	-	.	ID=exon-C9F05_RS12820-1;Parent=rna-C9F05_RS12820;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS12820;product=transfer-messenger RNA
NZ_PYKE01000196.1	RefSeq	gene	8185	9348	.	-	.	ID=gene-C9F05_RS12825;Name=C9F05_RS12825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12825;old_locus_tag=C9F05_13195
NZ_PYKE01000196.1	Protein Homology	CDS	8185	9348	.	-	0	ID=cds-WP_077914383.1;Parent=gene-C9F05_RS12825;Dbxref=GenBank:WP_077914383.1;Name=WP_077914383.1;Ontology_term=GO:0015031,GO:0030253,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein secretion by the type I secretion system|0030253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461621.1;locus_tag=C9F05_RS12825;product=HlyD family type I secretion periplasmic adaptor subunit;protein_id=WP_077914383.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	9356	11536	.	-	.	ID=gene-C9F05_RS12830;Name=C9F05_RS12830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12830;old_locus_tag=C9F05_13200
NZ_PYKE01000196.1	Protein Homology	CDS	9356	11536	.	-	0	ID=cds-WP_001727766.1;Parent=gene-C9F05_RS12830;Dbxref=GenBank:WP_001727766.1;Name=WP_001727766.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461620.1;locus_tag=C9F05_RS12830;product=type I secretion system permease/ATPase;protein_id=WP_001727766.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	11533	12942	.	-	.	ID=gene-C9F05_RS12835;Name=C9F05_RS12835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12835;old_locus_tag=C9F05_13205
NZ_PYKE01000196.1	Protein Homology	CDS	11533	12942	.	-	0	ID=cds-WP_135370338.1;Parent=gene-C9F05_RS12835;Dbxref=GenBank:WP_135370338.1;Name=WP_135370338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461619.1;locus_tag=C9F05_RS12835;product=TolC family outer membrane protein;protein_id=WP_135370338.1;transl_table=11
NZ_PYKE01000196.1	RefSeq	gene	13007	24481	.	-	.	ID=gene-C9F05_RS12840;Name=bapA;gbkey=Gene;gene=bapA;gene_biotype=protein_coding;locus_tag=C9F05_RS12840;old_locus_tag=C9F05_13210
NZ_PYKE01000196.1	Protein Homology	CDS	13007	24481	.	-	0	ID=cds-WP_135370339.1;Parent=gene-C9F05_RS12840;Dbxref=GenBank:WP_135370339.1;Name=WP_135370339.1;gbkey=CDS;gene=bapA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001237670.1;locus_tag=C9F05_RS12840;product=biofilm-associated protein BapA;protein_id=WP_135370339.1;transl_table=11
##sequence-region NZ_PYKE01000096.1 1 2425
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000096.1	RefSeq	region	1	2425	.	+	.	ID=NZ_PYKE01000096.1:1..2425;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000096.1	RefSeq	gene	1	546	.	+	.	ID=gene-C9F05_RS06945;Name=bfpA;gbkey=Gene;gene=bfpA;gene_biotype=protein_coding;locus_tag=C9F05_RS06945;old_locus_tag=C9F05_07085;partial=true;start_range=.,1
NZ_PYKE01000096.1	Protein Homology	CDS	1	546	.	+	0	ID=cds-WP_135370136.1;Parent=gene-C9F05_RS06945;Dbxref=GenBank:WP_135370136.1;Name=WP_135370136.1;gbkey=CDS;gene=bfpA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000243508.1;locus_tag=C9F05_RS06945;partial=true;product=type IV pilus major subunit protein BfpA;protein_id=WP_135370136.1;start_range=.,1;transl_table=11
NZ_PYKE01000096.1	RefSeq	gene	599	2035	.	+	.	ID=gene-C9F05_RS06950;Name=pilV;gbkey=Gene;gene=pilV;gene_biotype=protein_coding;locus_tag=C9F05_RS06950;old_locus_tag=C9F05_07090
NZ_PYKE01000096.1	Protein Homology	CDS	599	2035	.	+	0	ID=cds-WP_135370137.1;Parent=gene-C9F05_RS06950;Dbxref=GenBank:WP_135370137.1;Name=WP_135370137.1;gbkey=CDS;gene=pilV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000592082.1;locus_tag=C9F05_RS06950;product=shufflon system plasmid conjugative transfer pilus tip adhesin PilV;protein_id=WP_135370137.1;transl_table=11
##sequence-region NZ_PYKE01000284.1 1 2419
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000284.1	RefSeq	region	1	2419	.	+	.	ID=NZ_PYKE01000284.1:1..2419;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000284.1	RefSeq	gene	201	536	.	-	.	ID=gene-C9F05_RS18850;Name=C9F05_RS18850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18850;old_locus_tag=C9F05_19390
NZ_PYKE01000284.1	Protein Homology	CDS	201	536	.	-	0	ID=cds-WP_000803229.1;Parent=gene-C9F05_RS18850;Dbxref=GenBank:WP_000803229.1;Name=WP_000803229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460890.1;locus_tag=C9F05_RS18850;product=YecR-like lipofamily protein;protein_id=WP_000803229.1;transl_table=11
NZ_PYKE01000284.1	RefSeq	gene	791	1429	.	+	.	ID=gene-C9F05_RS18855;Name=C9F05_RS18855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18855;old_locus_tag=C9F05_19395
NZ_PYKE01000284.1	Protein Homology	CDS	791	1429	.	+	0	ID=cds-WP_000684804.1;Parent=gene-C9F05_RS18855;Dbxref=GenBank:WP_000684804.1;Name=WP_000684804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460889.1;locus_tag=C9F05_RS18855;product=RpiB/LacA/LacB family sugar-phosphate isomerase;protein_id=WP_000684804.1;transl_table=11
NZ_PYKE01000284.1	RefSeq	gene	1608	2111	.	-	.	ID=gene-C9F05_RS18860;Name=C9F05_RS18860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18860;old_locus_tag=C9F05_19400
NZ_PYKE01000284.1	Protein Homology	CDS	1608	2111	.	-	0	ID=cds-WP_000741707.1;Parent=gene-C9F05_RS18860;Dbxref=GenBank:WP_000741707.1;Name=WP_000741707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460888.1;locus_tag=C9F05_RS18860;product=non-heme ferritin-like protein;protein_id=WP_000741707.1;transl_table=11
##sequence-region NZ_PYKE01000317.1 1 2392
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000317.1	RefSeq	region	1	2392	.	+	.	ID=NZ_PYKE01000317.1:1..2392;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000317.1	RefSeq	gene	1	2084	.	+	.	ID=gene-C9F05_RS21625;Name=sopA;gbkey=Gene;gene=sopA;gene_biotype=protein_coding;locus_tag=C9F05_RS21625;old_locus_tag=C9F05_22210;partial=true;start_range=.,1
NZ_PYKE01000317.1	Protein Homology	CDS	1	2084	.	+	2	ID=cds-WP_135370627.1;Parent=gene-C9F05_RS21625;Dbxref=GenBank:WP_135370627.1;Name=WP_135370627.1;gbkey=CDS;gene=sopA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461011.1;locus_tag=C9F05_RS21625;partial=true;product=SPI-1 type III secretion system effector HECT-type E3 ubiquitin transferase SopA;protein_id=WP_135370627.1;start_range=.,1;transl_table=11
NZ_PYKE01000317.1	RefSeq	pseudogene	2214	2291	.	-	.	ID=gene-C9F05_RS23940;Name=C9F05_RS23940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23940;partial=true;pseudo=true;start_range=.,2214
NZ_PYKE01000317.1	Protein Homology	CDS	2214	2291	.	-	0	ID=cds-C9F05_RS23940;Parent=gene-C9F05_RS23940;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226536.1;locus_tag=C9F05_RS23940;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2214;transl_table=11
##sequence-region NZ_PYKE01000344.1 1 2392
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000344.1	RefSeq	region	1	2392	.	+	.	ID=NZ_PYKE01000344.1:1..2392;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000344.1	RefSeq	gene	178	291	.	-	.	ID=gene-C9F05_RS23475;Name=C9F05_RS23475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23475;old_locus_tag=C9F05_24070
NZ_PYKE01000344.1	Protein Homology	CDS	178	291	.	-	0	ID=cds-WP_001253282.1;Parent=gene-C9F05_RS23475;Dbxref=GenBank:WP_001253282.1;Name=WP_001253282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460130.1;locus_tag=C9F05_RS23475;product=YceO family protein;protein_id=WP_001253282.1;transl_table=11
NZ_PYKE01000344.1	RefSeq	gene	332	1450	.	-	.	ID=gene-C9F05_RS23480;Name=solA;gbkey=Gene;gene=solA;gene_biotype=protein_coding;locus_tag=C9F05_RS23480;old_locus_tag=C9F05_24075
NZ_PYKE01000344.1	Protein Homology	CDS	332	1450	.	-	0	ID=cds-WP_135370690.1;Parent=gene-C9F05_RS23480;Dbxref=GenBank:WP_135370690.1;Name=WP_135370690.1;Ontology_term=GO:0050131;gbkey=CDS;gene=solA;go_function=N-methyl-L-amino-acid oxidase activity|0050131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460131.1;locus_tag=C9F05_RS23480;product=N-methyl-L-tryptophan oxidase;protein_id=WP_135370690.1;transl_table=11
NZ_PYKE01000344.1	RefSeq	gene	1563	1817	.	-	.	ID=gene-C9F05_RS23485;Name=bssS;gbkey=Gene;gene=bssS;gene_biotype=protein_coding;locus_tag=C9F05_RS23485;old_locus_tag=C9F05_24080
NZ_PYKE01000344.1	Protein Homology	CDS	1563	1817	.	-	0	ID=cds-WP_000414441.1;Parent=gene-C9F05_RS23485;Dbxref=GenBank:WP_000414441.1;Name=WP_000414441.1;gbkey=CDS;gene=bssS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460132.3;locus_tag=C9F05_RS23485;product=biofilm formation regulator BssS;protein_id=WP_000414441.1;transl_table=11
NZ_PYKE01000344.1	RefSeq	gene	2107	2352	.	-	.	ID=gene-C9F05_RS23490;Name=dinI;gbkey=Gene;gene=dinI;gene_biotype=protein_coding;locus_tag=C9F05_RS23490;old_locus_tag=C9F05_24085
NZ_PYKE01000344.1	Protein Homology	CDS	2107	2352	.	-	0	ID=cds-WP_001217763.1;Parent=gene-C9F05_RS23490;Dbxref=GenBank:WP_001217763.1;Name=WP_001217763.1;gbkey=CDS;gene=dinI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460133.1;locus_tag=C9F05_RS23490;product=DNA damage-inducible protein I;protein_id=WP_001217763.1;transl_table=11
##sequence-region NZ_PYKE01000106.1 1 2347
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000106.1	RefSeq	region	1	2347	.	+	.	ID=NZ_PYKE01000106.1:1..2347;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000106.1	RefSeq	gene	82	495	.	-	.	ID=gene-C9F05_RS07890;Name=yedD;gbkey=Gene;gene=yedD;gene_biotype=protein_coding;locus_tag=C9F05_RS07890;old_locus_tag=C9F05_08075
NZ_PYKE01000106.1	Protein Homology	CDS	82	495	.	-	0	ID=cds-WP_000754694.1;Parent=gene-C9F05_RS07890;Dbxref=GenBank:WP_000754694.1;Name=WP_000754694.1;gbkey=CDS;gene=yedD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000754699.1;locus_tag=C9F05_RS07890;product=lipoprotein YedD;protein_id=WP_000754694.1;transl_table=11
NZ_PYKE01000106.1	RefSeq	gene	681	1886	.	+	.	ID=gene-C9F05_RS07895;Name=yedE;gbkey=Gene;gene=yedE;gene_biotype=protein_coding;locus_tag=C9F05_RS07895;old_locus_tag=C9F05_08080
NZ_PYKE01000106.1	Protein Homology	CDS	681	1886	.	+	0	ID=cds-WP_001519382.1;Parent=gene-C9F05_RS07895;Dbxref=GenBank:WP_001519382.1;Name=WP_001519382.1;gbkey=CDS;gene=yedE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016156840.1;locus_tag=C9F05_RS07895;product=selenium metabolism membrane protein YedE/FdhT;protein_id=WP_001519382.1;transl_table=11
NZ_PYKE01000106.1	RefSeq	gene	1883	2116	.	+	.	ID=gene-C9F05_RS07900;Name=yedF;gbkey=Gene;gene=yedF;gene_biotype=protein_coding;locus_tag=C9F05_RS07900;old_locus_tag=C9F05_08085
NZ_PYKE01000106.1	Protein Homology	CDS	1883	2116	.	+	0	ID=cds-WP_000790504.1;Parent=gene-C9F05_RS07900;Dbxref=GenBank:WP_000790504.1;Name=WP_000790504.1;gbkey=CDS;gene=yedF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310696.1;locus_tag=C9F05_RS07900;product=sulfurtransferase-like selenium metabolism protein YedF;protein_id=WP_000790504.1;transl_table=11
##sequence-region NZ_PYKE01000226.1 1 2318
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000226.1	RefSeq	region	1	2318	.	+	.	ID=NZ_PYKE01000226.1:1..2318;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000226.1	RefSeq	gene	52	429	.	-	.	ID=gene-C9F05_RS14770;Name=C9F05_RS14770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14770;old_locus_tag=C9F05_15185
NZ_PYKE01000226.1	Protein Homology	CDS	52	429	.	-	0	ID=cds-WP_135370414.1;Parent=gene-C9F05_RS14770;Dbxref=GenBank:WP_135370414.1;Name=WP_135370414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000734570.1;locus_tag=C9F05_RS14770;product=hypothetical protein;protein_id=WP_135370414.1;transl_table=11
NZ_PYKE01000226.1	RefSeq	gene	468	941	.	-	.	ID=gene-C9F05_RS14775;Name=C9F05_RS14775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14775;old_locus_tag=C9F05_15190
NZ_PYKE01000226.1	Protein Homology	CDS	468	941	.	-	0	ID=cds-WP_135370415.1;Parent=gene-C9F05_RS14775;Dbxref=GenBank:WP_135370415.1;Name=WP_135370415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001351134.1;locus_tag=C9F05_RS14775;product=DUF4755 domain-containing protein;protein_id=WP_135370415.1;transl_table=11
NZ_PYKE01000226.1	RefSeq	gene	1375	1905	.	+	.	ID=gene-C9F05_RS14780;Name=C9F05_RS14780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14780;old_locus_tag=C9F05_15195
NZ_PYKE01000226.1	Protein Homology	CDS	1375	1905	.	+	0	ID=cds-WP_135370416.1;Parent=gene-C9F05_RS14780;Dbxref=GenBank:WP_135370416.1;Name=WP_135370416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001608353.1;locus_tag=C9F05_RS14780;product=lipoprotein;protein_id=WP_135370416.1;transl_table=11
##sequence-region NZ_PYKE01000115.1 1 24550
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000115.1	RefSeq	region	1	24550	.	+	.	ID=NZ_PYKE01000115.1:1..24550;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000115.1	RefSeq	pseudogene	1	700	.	-	.	ID=gene-C9F05_RS08445;Name=C9F05_RS08445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS08445;old_locus_tag=C9F05_08640;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000115.1	Protein Homology	CDS	1	700	.	-	0	ID=cds-C9F05_RS08445;Parent=gene-C9F05_RS08445;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0005215,GO:0005524,GO:0016887,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459690.1;locus_tag=C9F05_RS08445;partial=true;product=HAD-IC family P-type ATPase;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	721	2400	.	-	.	ID=gene-C9F05_RS08450;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=protein_coding;locus_tag=C9F05_RS08450;old_locus_tag=C9F05_08645
NZ_PYKE01000115.1	Protein Homology	CDS	721	2400	.	-	0	ID=cds-WP_000730078.1;Parent=gene-C9F05_RS08450;Dbxref=GenBank:WP_000730078.1;Name=WP_000730078.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpA;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459691.1;locus_tag=C9F05_RS08450;product=potassium-transporting ATPase subunit KdpA;protein_id=WP_000730078.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	2400	2489	.	-	.	ID=gene-C9F05_RS08455;Name=kdpF;gbkey=Gene;gene=kdpF;gene_biotype=protein_coding;locus_tag=C9F05_RS08455;old_locus_tag=C9F05_08650
NZ_PYKE01000115.1	Protein Homology	CDS	2400	2489	.	-	0	ID=cds-WP_001670793.1;Parent=gene-C9F05_RS08455;Dbxref=GenBank:WP_001670793.1;Name=WP_001670793.1;gbkey=CDS;gene=kdpF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459692.1;locus_tag=C9F05_RS08455;product=K(+)-transporting ATPase subunit F;protein_id=WP_001670793.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	2826	3032	.	+	.	ID=gene-C9F05_RS08460;Name=C9F05_RS08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08460;old_locus_tag=C9F05_08655
NZ_PYKE01000115.1	Protein Homology	CDS	2826	3032	.	+	0	ID=cds-WP_000401437.1;Parent=gene-C9F05_RS08460;Dbxref=GenBank:WP_000401437.1;Name=WP_000401437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459693.1;locus_tag=C9F05_RS08460;product=YbfA family protein;protein_id=WP_000401437.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	3144	4565	.	+	.	ID=gene-C9F05_RS08465;Name=phrB;gbkey=Gene;gene=phrB;gene_biotype=protein_coding;locus_tag=C9F05_RS08465;old_locus_tag=C9F05_08660
NZ_PYKE01000115.1	Protein Homology	CDS	3144	4565	.	+	0	ID=cds-WP_001142022.1;Parent=gene-C9F05_RS08465;Dbxref=GenBank:WP_001142022.1;Name=WP_001142022.1;gbkey=CDS;gene=phrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459694.1;locus_tag=C9F05_RS08465;product=deoxyribodipyrimidine photo-lyase;protein_id=WP_001142022.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	4604	6085	.	-	.	ID=gene-C9F05_RS08470;Name=C9F05_RS08470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08470;old_locus_tag=C9F05_08665
NZ_PYKE01000115.1	Protein Homology	CDS	4604	6085	.	-	0	ID=cds-WP_001041123.1;Parent=gene-C9F05_RS08470;Dbxref=GenBank:WP_001041123.1;Name=WP_001041123.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459695.1;locus_tag=C9F05_RS08470;product=MFS transporter;protein_id=WP_001041123.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	6414	7157	.	+	.	ID=gene-C9F05_RS08475;Name=ybgI;gbkey=Gene;gene=ybgI;gene_biotype=protein_coding;locus_tag=C9F05_RS08475;old_locus_tag=C9F05_08675
NZ_PYKE01000115.1	Protein Homology	CDS	6414	7157	.	+	0	ID=cds-WP_135370182.1;Parent=gene-C9F05_RS08475;Dbxref=GenBank:WP_135370182.1;Name=WP_135370182.1;gbkey=CDS;gene=ybgI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000798886.1;locus_tag=C9F05_RS08475;product=radiation resistance protein YbgI;protein_id=WP_135370182.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	7173	7829	.	+	.	ID=gene-C9F05_RS08480;Name=pxpB;gbkey=Gene;gene=pxpB;gene_biotype=protein_coding;locus_tag=C9F05_RS08480;old_locus_tag=C9F05_08680
NZ_PYKE01000115.1	Protein Homology	CDS	7173	7829	.	+	0	ID=cds-WP_064012878.1;Parent=gene-C9F05_RS08480;Dbxref=GenBank:WP_064012878.1;Name=WP_064012878.1;Ontology_term=GO:0005975,GO:0008152,GO:0017168;gbkey=CDS;gene=pxpB;go_function=5-oxoprolinase (ATP-hydrolyzing) activity|0017168||IEA;go_process=carbohydrate metabolic process|0005975||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459697.1;locus_tag=C9F05_RS08480;product=5-oxoprolinase subunit PxpB;protein_id=WP_064012878.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	7823	8755	.	+	.	ID=gene-C9F05_RS08485;Name=pxpC;gbkey=Gene;gene=pxpC;gene_biotype=protein_coding;locus_tag=C9F05_RS08485;old_locus_tag=C9F05_08685
NZ_PYKE01000115.1	Protein Homology	CDS	7823	8755	.	+	0	ID=cds-WP_000932043.1;Parent=gene-C9F05_RS08485;Dbxref=GenBank:WP_000932043.1;Name=WP_000932043.1;Ontology_term=GO:0005975,GO:0008152,GO:0017168;gbkey=CDS;gene=pxpC;go_function=5-oxoprolinase (ATP-hydrolyzing) activity|0017168||IEA;go_process=carbohydrate metabolic process|0005975||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459698.1;locus_tag=C9F05_RS08485;product=5-oxoprolinase subunit PxpC;protein_id=WP_000932043.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	8745	9479	.	+	.	ID=gene-C9F05_RS08490;Name=pxpA;gbkey=Gene;gene=pxpA;gene_biotype=protein_coding;locus_tag=C9F05_RS08490;old_locus_tag=C9F05_08690
NZ_PYKE01000115.1	Protein Homology	CDS	8745	9479	.	+	0	ID=cds-WP_001017922.1;Parent=gene-C9F05_RS08490;Dbxref=GenBank:WP_001017922.1;Name=WP_001017922.1;Ontology_term=GO:0005975,GO:0003824;gbkey=CDS;gene=pxpA;go_function=catalytic activity|0003824||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459699.1;locus_tag=C9F05_RS08490;product=5-oxoprolinase subunit PxpA;protein_id=WP_001017922.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	9601	10392	.	+	.	ID=gene-C9F05_RS08495;Name=nei;gbkey=Gene;gene=nei;gene_biotype=protein_coding;locus_tag=C9F05_RS08495;old_locus_tag=C9F05_08695
NZ_PYKE01000115.1	Protein Homology	CDS	9601	10392	.	+	0	ID=cds-WP_001113967.1;Parent=gene-C9F05_RS08495;Dbxref=GenBank:WP_001113967.1;Name=WP_001113967.1;Ontology_term=GO:0006281,GO:0000703,GO:0003677,GO:0008270,GO:0140078;gbkey=CDS;gene=nei;go_function=oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity|0000703||IEA,DNA binding|0003677||IEA,zinc ion binding|0008270||IEA,class I DNA-(apurinic or apyrimidinic site) endonuclease activity|0140078||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459713.1;locus_tag=C9F05_RS08495;product=endonuclease VIII;protein_id=WP_001113967.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	10447	11493	.	-	.	ID=gene-C9F05_RS08500;Name=C9F05_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08500;old_locus_tag=C9F05_08700
NZ_PYKE01000115.1	Protein Homology	CDS	10447	11493	.	-	0	ID=cds-WP_023218323.1;Parent=gene-C9F05_RS08500;Dbxref=GenBank:WP_023218323.1;Name=WP_023218323.1;Ontology_term=GO:0010468,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=regulation of gene expression|0010468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459714.1;locus_tag=C9F05_RS08500;product=AbrB family transcriptional regulator;protein_id=WP_023218323.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	11629	12912	.	-	.	ID=gene-C9F05_RS08505;Name=C9F05_RS08505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08505;old_locus_tag=C9F05_08705
NZ_PYKE01000115.1	Protein Homology	CDS	11629	12912	.	-	0	ID=cds-WP_000785811.1;Parent=gene-C9F05_RS08505;Dbxref=GenBank:WP_000785811.1;Name=WP_000785811.1;Ontology_term=GO:0046912;gbkey=CDS;go_function=acyltransferase activity%2C acyl groups converted into alkyl on transfer|0046912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459715.1;locus_tag=C9F05_RS08505;product=citrate synthase;protein_id=WP_000785811.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	13138	13269	.	-	.	ID=gene-C9F05_RS24120;Name=C9F05_RS24120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24120
NZ_PYKE01000115.1	Protein Homology	CDS	13138	13269	.	-	0	ID=cds-WP_418142699.1;Parent=gene-C9F05_RS24120;Dbxref=GenBank:WP_418142699.1;Name=WP_418142699.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049035.1;locus_tag=C9F05_RS24120;product=hypothetical protein;protein_id=WP_418142699.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	13652	14056	.	+	.	ID=gene-C9F05_RS08510;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;gene_synonym=cybA,dhsC;locus_tag=C9F05_RS08510;old_locus_tag=C9F05_08720
NZ_PYKE01000115.1	Protein Homology	CDS	13652	14056	.	+	0	ID=cds-WP_000263340.1;Parent=gene-C9F05_RS08510;Dbxref=GenBank:WP_000263340.1;Name=WP_000263340.1;Ontology_term=GO:0006099,GO:0000104,GO:0009055,GO:0016020,GO:0045273;gbkey=CDS;gene=sdhC;go_component=membrane|0016020||IEA,respiratory chain complex II (succinate dehydrogenase)|0045273||IEA;go_function=succinate dehydrogenase activity|0000104||IEA,electron transfer activity|0009055||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000263334.1;locus_tag=C9F05_RS08510;product=succinate dehydrogenase cytochrome b556 subunit;protein_id=WP_000263340.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	14050	14397	.	+	.	ID=gene-C9F05_RS08515;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;gene_synonym=cybS,dhsD;locus_tag=C9F05_RS08515;old_locus_tag=C9F05_08725
NZ_PYKE01000115.1	Protein Homology	CDS	14050	14397	.	+	0	ID=cds-WP_000254356.1;Parent=gene-C9F05_RS08515;Dbxref=GenBank:WP_000254356.1;Name=WP_000254356.1;gbkey=CDS;gene=sdhD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017455938.1;locus_tag=C9F05_RS08515;product=succinate dehydrogenase membrane anchor subunit;protein_id=WP_000254356.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	14397	16163	.	+	.	ID=gene-C9F05_RS08520;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=C9F05_RS08520;old_locus_tag=C9F05_08730
NZ_PYKE01000115.1	Protein Homology	CDS	14397	16163	.	+	0	ID=cds-WP_000775561.1;Parent=gene-C9F05_RS08520;Dbxref=GenBank:WP_000775561.1;Name=WP_000775561.1;Ontology_term=GO:0006099,GO:0016627,GO:0050660;gbkey=CDS;gene=sdhA;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122549.1;locus_tag=C9F05_RS08520;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_000775561.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	16180	16896	.	+	.	ID=gene-C9F05_RS08525;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=C9F05_RS08525;old_locus_tag=C9F05_08735
NZ_PYKE01000115.1	Protein Homology	CDS	16180	16896	.	+	0	ID=cds-WP_001537859.1;Parent=gene-C9F05_RS08525;Dbxref=GenBank:WP_001537859.1;Name=WP_001537859.1;gbkey=CDS;gene=sdhB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133276.1;locus_tag=C9F05_RS08525;product=succinate dehydrogenase iron-sulfur subunit SdhB;protein_id=WP_001537859.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	17422	20223	.	+	.	ID=gene-C9F05_RS08530;Name=sucA;gbkey=Gene;gene=sucA;gene_biotype=protein_coding;locus_tag=C9F05_RS08530;old_locus_tag=C9F05_08740
NZ_PYKE01000115.1	Protein Homology	CDS	17422	20223	.	+	0	ID=cds-WP_001181500.1;Parent=gene-C9F05_RS08530;Dbxref=GenBank:WP_001181500.1;Name=WP_001181500.1;Ontology_term=GO:0006099,GO:0004591,GO:0030976,GO:0045252;gbkey=CDS;gene=sucA;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=oxoglutarate dehydrogenase (succinyl-transferring) activity|0004591||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459721.1;locus_tag=C9F05_RS08530;product=2-oxoglutarate dehydrogenase E1 component;protein_id=WP_001181500.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	20238	21446	.	+	.	ID=gene-C9F05_RS08535;Name=odhB;gbkey=Gene;gene=odhB;gene_biotype=protein_coding;locus_tag=C9F05_RS08535;old_locus_tag=C9F05_08745
NZ_PYKE01000115.1	Protein Homology	CDS	20238	21446	.	+	0	ID=cds-WP_000099858.1;Parent=gene-C9F05_RS08535;Dbxref=GenBank:WP_000099858.1;Name=WP_000099858.1;Ontology_term=GO:0006099,GO:0004149,GO:0045252;gbkey=CDS;gene=odhB;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=dihydrolipoyllysine-residue succinyltransferase activity|0004149||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459722.1;locus_tag=C9F05_RS08535;product=2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase;protein_id=WP_000099858.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	21588	22754	.	+	.	ID=gene-C9F05_RS08540;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=C9F05_RS08540;old_locus_tag=C9F05_08750
NZ_PYKE01000115.1	Protein Homology	CDS	21588	22754	.	+	0	ID=cds-WP_001048590.1;Parent=gene-C9F05_RS08540;Dbxref=GenBank:WP_001048590.1;Name=WP_001048590.1;Ontology_term=GO:0006099,GO:0003824,GO:0005524,GO:0046872;gbkey=CDS;gene=sucC;go_function=catalytic activity|0003824||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133271.1;locus_tag=C9F05_RS08540;product=ADP-forming succinate--CoA ligase subunit beta;protein_id=WP_001048590.1;transl_table=11
NZ_PYKE01000115.1	RefSeq	gene	22754	23623	.	+	.	ID=gene-C9F05_RS08545;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=C9F05_RS08545;old_locus_tag=C9F05_08755
NZ_PYKE01000115.1	Protein Homology	CDS	22754	23623	.	+	0	ID=cds-WP_000114631.1;Parent=gene-C9F05_RS08545;Dbxref=GenBank:WP_000114631.1;Name=WP_000114631.1;Ontology_term=GO:0003824;gbkey=CDS;gene=sucD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459724.1;locus_tag=C9F05_RS08545;product=succinate--CoA ligase subunit alpha;protein_id=WP_000114631.1;transl_table=11
##sequence-region NZ_PYKE01000347.1 1 2255
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000347.1	RefSeq	region	1	2255	.	+	.	ID=NZ_PYKE01000347.1:1..2255;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000347.1	RefSeq	gene	113	1453	.	+	.	ID=gene-C9F05_RS23515;Name=citS;gbkey=Gene;gene=citS;gene_biotype=protein_coding;locus_tag=C9F05_RS23515;old_locus_tag=C9F05_24110
NZ_PYKE01000347.1	Protein Homology	CDS	113	1453	.	+	0	ID=cds-WP_000183602.1;Parent=gene-C9F05_RS23515;Dbxref=GenBank:WP_000183602.1;Name=WP_000183602.1;Ontology_term=GO:0006101,GO:0006814,GO:0008514,GO:0015293;gbkey=CDS;gene=citS;go_function=organic anion transmembrane transporter activity|0008514||IEA,symporter activity|0015293||IEA;go_process=citrate metabolic process|0006101||IEA,sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459062.1;locus_tag=C9F05_RS23515;product=citrate/sodium symporter CitS;protein_id=WP_000183602.1;transl_table=11
NZ_PYKE01000347.1	RefSeq	gene	1612	1851	.	+	.	ID=gene-C9F05_RS23520;Name=C9F05_RS23520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23520;old_locus_tag=C9F05_24115
NZ_PYKE01000347.1	Protein Homology	CDS	1612	1851	.	+	0	ID=cds-WP_001001154.1;Parent=gene-C9F05_RS23520;Dbxref=GenBank:WP_001001154.1;Name=WP_001001154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459061.1;locus_tag=C9F05_RS23520;product=oxaloacetate decarboxylase subunit gamma;protein_id=WP_001001154.1;transl_table=11
NZ_PYKE01000347.1	RefSeq	pseudogene	1868	2255	.	+	.	ID=gene-C9F05_RS23525;Name=C9F05_RS23525;end_range=2255,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23525;old_locus_tag=C9F05_24120;partial=true;pseudo=true
NZ_PYKE01000347.1	Protein Homology	CDS	1868	2255	.	+	0	ID=cds-C9F05_RS23525;Parent=gene-C9F05_RS23525;Note=catalyzes the formation of pyruvate from oxaloacetate%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=2255,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=C9F05_RS23525;partial=true;product=sodium-extruding oxaloacetate decarboxylase subunit alpha;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000308.1 1 2243
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000308.1	RefSeq	region	1	2243	.	+	.	ID=NZ_PYKE01000308.1:1..2243;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000308.1	RefSeq	gene	76	1155	.	+	.	ID=gene-C9F05_RS20790;Name=waaB;gbkey=Gene;gene=waaB;gene_biotype=protein_coding;gene_synonym=rfaB;locus_tag=C9F05_RS20790;old_locus_tag=C9F05_21370
NZ_PYKE01000308.1	Protein Homology	CDS	76	1155	.	+	0	ID=cds-WP_135370602.1;Parent=gene-C9F05_RS20790;Dbxref=GenBank:WP_135370602.1;Name=WP_135370602.1;gbkey=CDS;gene=waaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462619.1;locus_tag=C9F05_RS20790;product=lipopolysaccharide 1%2C6-galactosyltransferase;protein_id=WP_135370602.1;transl_table=11
NZ_PYKE01000308.1	RefSeq	gene	1161	2174	.	+	.	ID=gene-C9F05_RS20795;Name=waaO;gbkey=Gene;gene=waaO;gene_biotype=protein_coding;gene_synonym=rfaI;locus_tag=C9F05_RS20795;old_locus_tag=C9F05_21375
NZ_PYKE01000308.1	Protein Homology	CDS	1161	2174	.	+	0	ID=cds-WP_023181621.1;Parent=gene-C9F05_RS20795;Dbxref=GenBank:WP_023181621.1;Name=WP_023181621.1;Ontology_term=GO:0009103,GO:0008918;gbkey=CDS;gene=waaO;go_function=lipopolysaccharide 3-alpha-galactosyltransferase activity|0008918||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462618.1;locus_tag=C9F05_RS20795;product=lipopolysaccharide 3-alpha-galactosyltransferase;protein_id=WP_023181621.1;transl_table=11
##sequence-region NZ_PYKE01000258.1 1 2241
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000258.1	RefSeq	region	1	2241	.	+	.	ID=NZ_PYKE01000258.1:1..2241;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000258.1	RefSeq	gene	52	570	.	-	.	ID=gene-C9F05_RS16880;Name=C9F05_RS16880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16880;old_locus_tag=C9F05_17375
NZ_PYKE01000258.1	Protein Homology	CDS	52	570	.	-	0	ID=cds-WP_167851661.1;Parent=gene-C9F05_RS16880;Dbxref=GenBank:WP_167851661.1;Name=WP_167851661.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460248.1;locus_tag=C9F05_RS16880;product=YbaK/prolyl-tRNA synthetase associated domain-containing protein;protein_id=WP_167851661.1;transl_table=11
NZ_PYKE01000258.1	RefSeq	gene	620	2113	.	-	.	ID=gene-C9F05_RS16885;Name=dgcJ;gbkey=Gene;gene=dgcJ;gene_biotype=protein_coding;locus_tag=C9F05_RS16885;old_locus_tag=C9F05_17380
NZ_PYKE01000258.1	Protein Homology	CDS	620	2113	.	-	0	ID=cds-WP_135370490.1;Parent=gene-C9F05_RS16885;Dbxref=GenBank:WP_135370490.1;Name=WP_135370490.1;Ontology_term=GO:0043709,GO:1902201,GO:0052621;gbkey=CDS;gene=dgcJ;go_function=diguanylate cyclase activity|0052621||IEA;go_process=cell adhesion involved in single-species biofilm formation|0043709||IEA,negative regulation of bacterial-type flagellum-dependent cell motility|1902201||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460249.1;locus_tag=C9F05_RS16885;product=diguanylate cyclase DgcJ;protein_id=WP_135370490.1;transl_table=11
##sequence-region NZ_PYKE01000203.1 1 2210
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000203.1	RefSeq	region	1	2210	.	+	.	ID=NZ_PYKE01000203.1:1..2210;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000203.1	RefSeq	pseudogene	1	103	.	-	.	ID=gene-C9F05_RS23860;Name=C9F05_RS23860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23860;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000203.1	Protein Homology	CDS	1	103	.	-	0	ID=cds-C9F05_RS23860;Parent=gene-C9F05_RS23860;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461824.1;locus_tag=C9F05_RS23860;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000203.1	RefSeq	pseudogene	344	544	.	+	.	ID=gene-C9F05_RS13340;Name=C9F05_RS13340;end_range=544,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS13340;old_locus_tag=C9F05_13725;partial=true;pseudo=true
NZ_PYKE01000203.1	Protein Homology	CDS	344	544	.	+	0	ID=cds-C9F05_RS13340;Parent=gene-C9F05_RS13340;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=544,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477168.1;locus_tag=C9F05_RS13340;partial=true;product=transposase;pseudo=true;transl_table=11
NZ_PYKE01000203.1	RefSeq	gene	814	1104	.	+	.	ID=gene-C9F05_RS13345;Name=C9F05_RS13345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13345;old_locus_tag=C9F05_13730
NZ_PYKE01000203.1	Protein Homology	CDS	814	1104	.	+	0	ID=cds-WP_000855694.1;Parent=gene-C9F05_RS13345;Dbxref=GenBank:WP_000855694.1;Name=WP_000855694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461825.1;locus_tag=C9F05_RS13345;product=type II toxin-antitoxin system TacA family antitoxin;protein_id=WP_000855694.1;transl_table=11
NZ_PYKE01000203.1	RefSeq	gene	1101	1628	.	+	.	ID=gene-C9F05_RS13350;Name=C9F05_RS13350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13350;old_locus_tag=C9F05_13735
NZ_PYKE01000203.1	Protein Homology	CDS	1101	1628	.	+	0	ID=cds-WP_000971649.1;Parent=gene-C9F05_RS13350;Dbxref=GenBank:WP_000971649.1;Name=WP_000971649.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461826.1;locus_tag=C9F05_RS13350;product=GNAT family N-acetyltransferase;protein_id=WP_000971649.1;transl_table=11
NZ_PYKE01000203.1	RefSeq	pseudogene	1701	1916	.	-	.	ID=gene-C9F05_RS13355;Name=C9F05_RS13355;end_range=1916,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS13355;old_locus_tag=C9F05_13740;partial=true;pseudo=true
NZ_PYKE01000203.1	Protein Homology	CDS	1701	1916	.	-	0	ID=cds-C9F05_RS13355;Parent=gene-C9F05_RS13355;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1916,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011791210.1;locus_tag=C9F05_RS13355;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000040.1 1 24326
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000040.1	RefSeq	region	1	24326	.	+	.	ID=NZ_PYKE01000040.1:1..24326;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000040.1	RefSeq	pseudogene	1	65	.	+	.	ID=gene-C9F05_RS23735;Name=C9F05_RS23735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23735;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000040.1	Protein Homology	CDS	1	65	.	+	2	ID=cds-C9F05_RS23735;Parent=gene-C9F05_RS23735;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461501.1;locus_tag=C9F05_RS23735;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	66	1610	.	+	.	ID=gene-C9F05_RS02825;Name=mltF;gbkey=Gene;gene=mltF;gene_biotype=protein_coding;locus_tag=C9F05_RS02825;old_locus_tag=C9F05_02875
NZ_PYKE01000040.1	Protein Homology	CDS	66	1610	.	+	0	ID=cds-WP_135370014.1;Parent=gene-C9F05_RS02825;Dbxref=GenBank:WP_135370014.1;Name=WP_135370014.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltF;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461502.1;locus_tag=C9F05_RS02825;product=membrane-bound lytic murein transglycosylase MltF;protein_id=WP_135370014.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	1661	2212	.	-	.	ID=gene-C9F05_RS02830;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=C9F05_RS02830;old_locus_tag=C9F05_02880
NZ_PYKE01000040.1	Protein Homology	CDS	1661	2212	.	-	0	ID=cds-WP_135370015.1;Parent=gene-C9F05_RS02830;Dbxref=GenBank:WP_135370015.1;Name=WP_135370015.1;Ontology_term=GO:0002100,GO:0008251,GO:0008270;gbkey=CDS;gene=tadA;go_function=tRNA-specific adenosine deaminase activity|0008251||IEA,zinc ion binding|0008270||IEA;go_process=tRNA wobble adenosine to inosine editing|0002100||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461503.1;locus_tag=C9F05_RS02830;product=tRNA adenosine(34) deaminase TadA;protein_id=WP_135370015.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	2237	2872	.	-	.	ID=gene-C9F05_RS02835;Name=yfhb;gbkey=Gene;gene=yfhb;gene_biotype=protein_coding;locus_tag=C9F05_RS02835;old_locus_tag=C9F05_02885
NZ_PYKE01000040.1	Protein Homology	CDS	2237	2872	.	-	0	ID=cds-WP_000253558.1;Parent=gene-C9F05_RS02835;Dbxref=GenBank:WP_000253558.1;Name=WP_000253558.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yfhb;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461504.1;locus_tag=C9F05_RS02835;product=phosphatidylglycerophosphatase C;protein_id=WP_000253558.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	2876	4237	.	-	.	ID=gene-C9F05_RS02840;Name=C9F05_RS02840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02840;old_locus_tag=C9F05_02890
NZ_PYKE01000040.1	Protein Homology	CDS	2876	4237	.	-	0	ID=cds-WP_000361660.1;Parent=gene-C9F05_RS02840;Dbxref=GenBank:WP_000361660.1;Name=WP_000361660.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461505.1;locus_tag=C9F05_RS02840;product=PTS transporter subunit EIIC;protein_id=WP_000361660.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	4248	5141	.	-	.	ID=gene-C9F05_RS02845;Name=murQ;gbkey=Gene;gene=murQ;gene_biotype=protein_coding;locus_tag=C9F05_RS02845;old_locus_tag=C9F05_02895
NZ_PYKE01000040.1	Protein Homology	CDS	4248	5141	.	-	0	ID=cds-WP_001048531.1;Parent=gene-C9F05_RS02845;Dbxref=GenBank:WP_001048531.1;Name=WP_001048531.1;Ontology_term=GO:0009254,GO:0046348,GO:0016835;gbkey=CDS;gene=murQ;go_function=carbon-oxygen lyase activity|0016835||IEA;go_process=peptidoglycan turnover|0009254||IEA,amino sugar catabolic process|0046348||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461506.1;locus_tag=C9F05_RS02845;product=N-acetylmuramic acid 6-phosphate etherase;protein_id=WP_001048531.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	5257	6105	.	+	.	ID=gene-C9F05_RS02850;Name=C9F05_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02850;old_locus_tag=C9F05_02900
NZ_PYKE01000040.1	Protein Homology	CDS	5257	6105	.	+	0	ID=cds-WP_000995692.1;Parent=gene-C9F05_RS02850;Dbxref=GenBank:WP_000995692.1;Name=WP_000995692.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461507.1;locus_tag=C9F05_RS02850;product=MurR/RpiR family transcriptional regulator;protein_id=WP_000995692.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	6144	7061	.	-	.	ID=gene-C9F05_RS02855;Name=C9F05_RS02855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02855;old_locus_tag=C9F05_02905
NZ_PYKE01000040.1	Protein Homology	CDS	6144	7061	.	-	0	ID=cds-WP_023259212.1;Parent=gene-C9F05_RS02855;Dbxref=GenBank:WP_023259212.1;Name=WP_023259212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461508.1;locus_tag=C9F05_RS02855;product=oxidoreductase;protein_id=WP_023259212.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	7083	8279	.	-	.	ID=gene-C9F05_RS02860;Name=C9F05_RS02860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02860;old_locus_tag=C9F05_02910
NZ_PYKE01000040.1	Protein Homology	CDS	7083	8279	.	-	0	ID=cds-WP_001276364.1;Parent=gene-C9F05_RS02860;Dbxref=GenBank:WP_001276364.1;Name=WP_001276364.1;Ontology_term=GO:0015129;gbkey=CDS;go_function=lactate transmembrane transporter activity|0015129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461509.1;locus_tag=C9F05_RS02860;product=L-lactate MFS transporter;protein_id=WP_001276364.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	8395	9321	.	+	.	ID=gene-C9F05_RS02865;Name=C9F05_RS02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02865;old_locus_tag=C9F05_02915
NZ_PYKE01000040.1	Protein Homology	CDS	8395	9321	.	+	0	ID=cds-WP_001022463.1;Parent=gene-C9F05_RS02865;Dbxref=GenBank:WP_001022463.1;Name=WP_001022463.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461510.1;locus_tag=C9F05_RS02865;product=LysR family transcriptional regulator;protein_id=WP_001022463.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	9359	9619	.	+	.	ID=gene-C9F05_RS02870;Name=C9F05_RS02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02870;old_locus_tag=C9F05_02920
NZ_PYKE01000040.1	Protein Homology	CDS	9359	9619	.	+	0	ID=cds-WP_001196290.1;Parent=gene-C9F05_RS02870;Dbxref=GenBank:WP_001196290.1;Name=WP_001196290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461511.1;locus_tag=C9F05_RS02870;product=YfhL family 4Fe-4S dicluster ferredoxin;protein_id=WP_001196290.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	9731	10111	.	-	.	ID=gene-C9F05_RS02875;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=C9F05_RS02875;old_locus_tag=C9F05_02925
NZ_PYKE01000040.1	Protein Homology	CDS	9731	10111	.	-	0	ID=cds-WP_000986043.1;Parent=gene-C9F05_RS02875;Dbxref=GenBank:WP_000986043.1;Name=WP_000986043.1;Ontology_term=GO:0008610,GO:0008897;gbkey=CDS;gene=acpS;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461512.1;locus_tag=C9F05_RS02875;product=holo-ACP synthase;protein_id=WP_000986043.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	10111	10842	.	-	.	ID=gene-C9F05_RS02880;Name=pdxJ;gbkey=Gene;gene=pdxJ;gene_biotype=protein_coding;locus_tag=C9F05_RS02880;old_locus_tag=C9F05_02930
NZ_PYKE01000040.1	Protein Homology	CDS	10111	10842	.	-	0	ID=cds-WP_000818964.1;Parent=gene-C9F05_RS02880;Dbxref=GenBank:WP_000818964.1;Name=WP_000818964.1;Ontology_term=GO:0008615,GO:0033856;gbkey=CDS;gene=pdxJ;go_function=pyridoxine 5'-phosphate synthase activity|0033856||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461513.1;locus_tag=C9F05_RS02880;product=pyridoxine 5'-phosphate synthase;protein_id=WP_000818964.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	10854	11582	.	-	.	ID=gene-C9F05_RS02885;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=C9F05_RS02885;old_locus_tag=C9F05_02935
NZ_PYKE01000040.1	Protein Homology	CDS	10854	11582	.	-	0	ID=cds-WP_000399380.1;Parent=gene-C9F05_RS02885;Dbxref=GenBank:WP_000399380.1;Name=WP_000399380.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461514.1;locus_tag=C9F05_RS02885;product=DNA repair protein RecO;protein_id=WP_000399380.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	11594	12499	.	-	.	ID=gene-C9F05_RS02890;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=C9F05_RS02890;old_locus_tag=C9F05_02940
NZ_PYKE01000040.1	Protein Homology	CDS	11594	12499	.	-	0	ID=cds-WP_000102230.1;Parent=gene-C9F05_RS02890;Dbxref=GenBank:WP_000102230.1;Name=WP_000102230.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461515.1;locus_tag=C9F05_RS02890;product=GTPase Era;protein_id=WP_000102230.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	12496	13176	.	-	.	ID=gene-C9F05_RS02895;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=C9F05_RS02895;old_locus_tag=C9F05_02945
NZ_PYKE01000040.1	Protein Homology	CDS	12496	13176	.	-	0	ID=cds-WP_001068341.1;Parent=gene-C9F05_RS02895;Dbxref=GenBank:WP_001068341.1;Name=WP_001068341.1;Ontology_term=GO:0006364,GO:0006396,GO:0003723,GO:0004525;gbkey=CDS;gene=rnc;go_function=RNA binding|0003723||IEA,ribonuclease III activity|0004525||IEA;go_process=rRNA processing|0006364||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015960048.1;locus_tag=C9F05_RS02895;product=ribonuclease III;protein_id=WP_001068341.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	13450	14424	.	-	.	ID=gene-C9F05_RS02900;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=C9F05_RS02900;old_locus_tag=C9F05_02955
NZ_PYKE01000040.1	Protein Homology	CDS	13450	14424	.	-	0	ID=cds-WP_023262191.1;Parent=gene-C9F05_RS02900;Dbxref=GenBank:WP_023262191.1;Name=WP_023262191.1;Ontology_term=GO:0006465,GO:0004252;gbkey=CDS;gene=lepB;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461517.1;locus_tag=C9F05_RS02900;product=signal peptidase I;protein_id=WP_023262191.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	14441	16240	.	-	.	ID=gene-C9F05_RS02905;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=C9F05_RS02905;old_locus_tag=C9F05_02960
NZ_PYKE01000040.1	Protein Homology	CDS	14441	16240	.	-	0	ID=cds-WP_000790154.1;Parent=gene-C9F05_RS02905;Dbxref=GenBank:WP_000790154.1;Name=WP_000790154.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461518.1;locus_tag=C9F05_RS02905;product=translation elongation factor 4;protein_id=WP_000790154.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	16492	16971	.	-	.	ID=gene-C9F05_RS02915;Name=rseC;gbkey=Gene;gene=rseC;gene_biotype=protein_coding;locus_tag=C9F05_RS02915;old_locus_tag=C9F05_02970
NZ_PYKE01000040.1	Protein Homology	CDS	16492	16971	.	-	0	ID=cds-WP_000589049.1;Parent=gene-C9F05_RS02915;Dbxref=GenBank:WP_000589049.1;Name=WP_000589049.1;gbkey=CDS;gene=rseC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461572.1;locus_tag=C9F05_RS02915;product=SoxR-reducing system protein RseC;protein_id=WP_000589049.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	16968	17924	.	-	.	ID=gene-C9F05_RS02920;Name=rseB;gbkey=Gene;gene=rseB;gene_biotype=protein_coding;locus_tag=C9F05_RS02920;old_locus_tag=C9F05_02975
NZ_PYKE01000040.1	Protein Homology	CDS	16968	17924	.	-	0	ID=cds-WP_023201326.1;Parent=gene-C9F05_RS02920;Dbxref=GenBank:WP_023201326.1;Name=WP_023201326.1;gbkey=CDS;gene=rseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461573.1;locus_tag=C9F05_RS02920;product=sigma-E factor regulatory protein RseB;protein_id=WP_023201326.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	17924	18574	.	-	.	ID=gene-C9F05_RS02925;Name=rseA;gbkey=Gene;gene=rseA;gene_biotype=protein_coding;locus_tag=C9F05_RS02925;old_locus_tag=C9F05_02980
NZ_PYKE01000040.1	Protein Homology	CDS	17924	18574	.	-	0	ID=cds-WP_001168374.1;Parent=gene-C9F05_RS02925;Dbxref=GenBank:WP_001168374.1;Name=WP_001168374.1;Ontology_term=GO:0016989;gbkey=CDS;gene=rseA;go_function=sigma factor antagonist activity|0016989||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461574.1;locus_tag=C9F05_RS02925;product=anti-sigma-E factor RseA;protein_id=WP_001168374.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	18606	19181	.	-	.	ID=gene-C9F05_RS02930;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=C9F05_RS02930;old_locus_tag=C9F05_02985
NZ_PYKE01000040.1	Protein Homology	CDS	18606	19181	.	-	0	ID=cds-WP_000003307.1;Parent=gene-C9F05_RS02930;Dbxref=GenBank:WP_000003307.1;Name=WP_000003307.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoE;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005070454.1;locus_tag=C9F05_RS02930;product=RNA polymerase sigma factor RpoE;protein_id=WP_000003307.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	19178	19342	.	-	.	ID=gene-C9F05_RS02935;Name=rseD;gbkey=Gene;gene=rseD;gene_biotype=protein_coding;locus_tag=C9F05_RS02935
NZ_PYKE01000040.1	Protein Homology	CDS	19178	19342	.	-	0	ID=cds-WP_014344135.1;Parent=gene-C9F05_RS02935;Dbxref=GenBank:WP_014344135.1;Name=WP_014344135.1;gbkey=CDS;gene=rseD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014344135.1;locus_tag=C9F05_RS02935;product=rpoE leader peptide RseD;protein_id=WP_014344135.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	19606	21228	.	+	.	ID=gene-C9F05_RS02945;Name=nadB;gbkey=Gene;gene=nadB;gene_biotype=protein_coding;locus_tag=C9F05_RS02945;old_locus_tag=C9F05_02995
NZ_PYKE01000040.1	Protein Homology	CDS	19606	21228	.	+	0	ID=cds-WP_000989186.1;Parent=gene-C9F05_RS02945;Dbxref=GenBank:WP_000989186.1;Name=WP_000989186.1;Ontology_term=GO:0009435,GO:0008734;gbkey=CDS;gene=nadB;go_function=L-aspartate oxidase activity|0008734||IEA;go_process=NAD+ biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461576.1;locus_tag=C9F05_RS02945;product=L-aspartate oxidase;protein_id=WP_000989186.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	pseudogene	21213	21950	.	-	.	ID=gene-C9F05_RS02950;Name=trmN;gbkey=Gene;gene=trmN;gene_biotype=pseudogene;locus_tag=C9F05_RS02950;old_locus_tag=C9F05_03000;pseudo=true
NZ_PYKE01000040.1	Protein Homology	CDS	21213	21950	.	-	0	ID=cds-C9F05_RS02950;Parent=gene-C9F05_RS02950;Note=internal stop;Ontology_term=GO:0030488,GO:0003676,GO:0016430;gbkey=CDS;gene=trmN;go_function=nucleic acid binding|0003676||IEA,tRNA (adenine-N6)-methyltransferase activity|0016430||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461577.1;locus_tag=C9F05_RS02950;product=tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN;pseudo=true;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	22080	23414	.	+	.	ID=gene-C9F05_RS02955;Name=srmB;gbkey=Gene;gene=srmB;gene_biotype=protein_coding;locus_tag=C9F05_RS02955;old_locus_tag=C9F05_03005
NZ_PYKE01000040.1	Protein Homology	CDS	22080	23414	.	+	0	ID=cds-WP_000219174.1;Parent=gene-C9F05_RS02955;Dbxref=GenBank:WP_000219174.1;Name=WP_000219174.1;Ontology_term=GO:0000027,GO:0003724;gbkey=CDS;gene=srmB;go_function=RNA helicase activity|0003724||IEA;go_process=ribosomal large subunit assembly|0000027||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461578.1;locus_tag=C9F05_RS02955;product=ATP-dependent RNA helicase SrmB;protein_id=WP_000219174.1;transl_table=11
NZ_PYKE01000040.1	RefSeq	gene	23432	24325	.	-	.	ID=gene-C9F05_RS02960;Name=C9F05_RS02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02960;old_locus_tag=C9F05_03010
NZ_PYKE01000040.1	Protein Homology	CDS	23432	24325	.	-	0	ID=cds-WP_255121297.1;Parent=gene-C9F05_RS02960;Dbxref=GenBank:WP_255121297.1;Name=WP_255121297.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461579.1;locus_tag=C9F05_RS02960;product=LysR family transcriptional regulator;protein_id=WP_255121297.1;transl_table=11
##sequence-region NZ_PYKE01000105.1 1 2120
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000105.1	RefSeq	region	1	2120	.	+	.	ID=NZ_PYKE01000105.1:1..2120;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000105.1	RefSeq	gene	1	475	.	-	.	ID=gene-C9F05_RS07870;Name=C9F05_RS07870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07870;old_locus_tag=C9F05_08055;partial=true;start_range=.,1
NZ_PYKE01000105.1	Protein Homology	CDS	1	475	.	-	0	ID=cds-WP_135370165.1;Parent=gene-C9F05_RS07870;Dbxref=GenBank:WP_135370165.1;Name=WP_135370165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000676522.1;locus_tag=C9F05_RS07870;partial=true;product=DUF1202 family protein;protein_id=WP_135370165.1;start_range=.,1;transl_table=11
NZ_PYKE01000105.1	RefSeq	pseudogene	813	1694	.	-	.	ID=gene-C9F05_RS07880;Name=C9F05_RS07880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS07880;old_locus_tag=C9F05_08065;pseudo=true
NZ_PYKE01000105.1	Protein Homology	CDS	813	1694	.	-	0	ID=cds-C9F05_RS07880;Parent=gene-C9F05_RS07880;Note=frameshifted%3B internal stop;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612101.1;locus_tag=C9F05_RS07880;product=IS3 family transposase;pseudo=true;transl_table=11
NZ_PYKE01000105.1	RefSeq	gene	1811	2032	.	+	.	ID=gene-C9F05_RS07885;Name=C9F05_RS07885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS07885;old_locus_tag=C9F05_08070
NZ_PYKE01000105.1	Protein Homology	CDS	1811	2032	.	+	0	ID=cds-WP_031607830.1;Parent=gene-C9F05_RS07885;Dbxref=GenBank:WP_031607830.1;Name=WP_031607830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463181.1;locus_tag=C9F05_RS07885;product=hypothetical protein;protein_id=WP_031607830.1;transl_table=11
##sequence-region NZ_PYKE01000216.1 1 2088
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000216.1	RefSeq	region	1	2088	.	+	.	ID=NZ_PYKE01000216.1:1..2088;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000216.1	RefSeq	gene	1	2088	.	+	.	ID=gene-C9F05_RS13895;Name=C9F05_RS13895;end_range=2088,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13895;old_locus_tag=C9F05_14290;partial=true;start_range=.,1
NZ_PYKE01000216.1	Protein Homology	CDS	1	2088	.	+	2	ID=cds-WP_217810226.1;Parent=gene-C9F05_RS13895;Dbxref=GenBank:WP_217810226.1;Name=WP_217810226.1;end_range=2088,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001044775.1;locus_tag=C9F05_RS13895;partial=true;product=autotransporter-associated beta strand repeat-containing protein;protein_id=WP_217810226.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000198.1 1 2074
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000198.1	RefSeq	region	1	2074	.	+	.	ID=NZ_PYKE01000198.1:1..2074;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000198.1	RefSeq	gene	1	566	.	+	.	ID=gene-C9F05_RS12850;Name=C9F05_RS12850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12850;old_locus_tag=C9F05_13220;partial=true;start_range=.,1
NZ_PYKE01000198.1	Protein Homology	CDS	1	566	.	+	2	ID=cds-WP_135370341.1;Parent=gene-C9F05_RS12850;Dbxref=GenBank:WP_135370341.1;Name=WP_135370341.1;Ontology_term=GO:0009058,GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461729.1;locus_tag=C9F05_RS12850;partial=true;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_135370341.1;start_range=.,1;transl_table=11
NZ_PYKE01000198.1	RefSeq	gene	650	976	.	-	.	ID=gene-C9F05_RS12855;Name=C9F05_RS12855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12855;old_locus_tag=C9F05_13225
NZ_PYKE01000198.1	Protein Homology	CDS	650	976	.	-	0	ID=cds-WP_001650455.1;Parent=gene-C9F05_RS12855;Dbxref=GenBank:WP_001650455.1;Name=WP_001650455.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528627.1;locus_tag=C9F05_RS12855;product=DUF883 domain-containing protein;protein_id=WP_001650455.1;transl_table=11
NZ_PYKE01000198.1	RefSeq	gene	1138	1488	.	+	.	ID=gene-C9F05_RS12860;Name=C9F05_RS12860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12860;old_locus_tag=C9F05_13230
NZ_PYKE01000198.1	Protein Homology	CDS	1138	1488	.	+	0	ID=cds-WP_000281304.1;Parent=gene-C9F05_RS12860;Dbxref=GenBank:WP_000281304.1;Name=WP_000281304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461727.1;locus_tag=C9F05_RS12860;product=DUF2002 family protein;protein_id=WP_000281304.1;transl_table=11
NZ_PYKE01000198.1	RefSeq	gene	1523	1972	.	-	.	ID=gene-C9F05_RS12865;Name=alaE;gbkey=Gene;gene=alaE;gene_biotype=protein_coding;locus_tag=C9F05_RS12865;old_locus_tag=C9F05_13235
NZ_PYKE01000198.1	Protein Homology	CDS	1523	1972	.	-	0	ID=cds-WP_000492669.1;Parent=gene-C9F05_RS12865;Dbxref=GenBank:WP_000492669.1;Name=WP_000492669.1;gbkey=CDS;gene=alaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461726.1;locus_tag=C9F05_RS12865;product=L-alanine exporter AlaE;protein_id=WP_000492669.1;transl_table=11
##sequence-region NZ_PYKE01000227.1 1 24247
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000227.1	RefSeq	region	1	24247	.	+	.	ID=NZ_PYKE01000227.1:1..24247;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000227.1	RefSeq	gene	111	395	.	+	.	ID=gene-C9F05_RS14785;Name=pduA;gbkey=Gene;gene=pduA;gene_biotype=protein_coding;locus_tag=C9F05_RS14785;old_locus_tag=C9F05_15200
NZ_PYKE01000227.1	Protein Homology	CDS	111	395	.	+	0	ID=cds-WP_001183618.1;Parent=gene-C9F05_RS14785;Dbxref=GenBank:WP_001183618.1;Name=WP_001183618.1;gbkey=CDS;gene=pduA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460983.1;locus_tag=C9F05_RS14785;product=propanediol utilization microcompartment protein PduA;protein_id=WP_001183618.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	392	1204	.	+	.	ID=gene-C9F05_RS14790;Name=pduB;gbkey=Gene;gene=pduB;gene_biotype=protein_coding;locus_tag=C9F05_RS14790;old_locus_tag=C9F05_15205
NZ_PYKE01000227.1	Protein Homology	CDS	392	1204	.	+	0	ID=cds-WP_000097497.1;Parent=gene-C9F05_RS14790;Dbxref=GenBank:WP_000097497.1;Name=WP_000097497.1;Ontology_term=GO:0005198,GO:0031469;gbkey=CDS;gene=pduB;go_component=bacterial microcompartment|0031469||IEA;go_function=structural molecule activity|0005198||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228567.1;locus_tag=C9F05_RS14790;product=propanediol utilization microcompartment protein PduB;protein_id=WP_000097497.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	1223	2887	.	+	.	ID=gene-C9F05_RS14795;Name=pduC;gbkey=Gene;gene=pduC;gene_biotype=protein_coding;locus_tag=C9F05_RS14795;old_locus_tag=C9F05_15210
NZ_PYKE01000227.1	Protein Homology	CDS	1223	2887	.	+	0	ID=cds-WP_001256899.1;Parent=gene-C9F05_RS14795;Dbxref=GenBank:WP_001256899.1;Name=WP_001256899.1;gbkey=CDS;gene=pduC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460985.1;locus_tag=C9F05_RS14795;product=propanediol dehydratase large subunit PduC;protein_id=WP_001256899.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	2898	3572	.	+	.	ID=gene-C9F05_RS14800;Name=pduD;gbkey=Gene;gene=pduD;gene_biotype=protein_coding;locus_tag=C9F05_RS14800;old_locus_tag=C9F05_15215
NZ_PYKE01000227.1	Protein Homology	CDS	2898	3572	.	+	0	ID=cds-WP_000405048.1;Parent=gene-C9F05_RS14800;Dbxref=GenBank:WP_000405048.1;Name=WP_000405048.1;gbkey=CDS;gene=pduD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460986.1;locus_tag=C9F05_RS14800;product=propanediol dehydratase medium subunit PduD;protein_id=WP_000405048.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	3587	4108	.	+	.	ID=gene-C9F05_RS14805;Name=pduE;gbkey=Gene;gene=pduE;gene_biotype=protein_coding;locus_tag=C9F05_RS14805;old_locus_tag=C9F05_15220
NZ_PYKE01000227.1	Protein Homology	CDS	3587	4108	.	+	0	ID=cds-WP_001090597.1;Parent=gene-C9F05_RS14805;Dbxref=GenBank:WP_001090597.1;Name=WP_001090597.1;gbkey=CDS;gene=pduE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460987.1;locus_tag=C9F05_RS14805;product=propanediol dehydratase small subunit PduE;protein_id=WP_001090597.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	4124	5956	.	+	.	ID=gene-C9F05_RS14810;Name=pduG;gbkey=Gene;gene=pduG;gene_biotype=protein_coding;locus_tag=C9F05_RS14810;old_locus_tag=C9F05_15225
NZ_PYKE01000227.1	Protein Homology	CDS	4124	5956	.	+	0	ID=cds-WP_001268899.1;Parent=gene-C9F05_RS14810;Dbxref=GenBank:WP_001268899.1;Name=WP_001268899.1;gbkey=CDS;gene=pduG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460988.1;locus_tag=C9F05_RS14810;product=propanediol dehydratase reactivase alpha subunit PduG;protein_id=WP_001268899.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	5946	6296	.	+	.	ID=gene-C9F05_RS14815;Name=pduH;gbkey=Gene;gene=pduH;gene_biotype=protein_coding;locus_tag=C9F05_RS14815;old_locus_tag=C9F05_15230
NZ_PYKE01000227.1	Protein Homology	CDS	5946	6296	.	+	0	ID=cds-WP_000377970.1;Parent=gene-C9F05_RS14815;Dbxref=GenBank:WP_000377970.1;Name=WP_000377970.1;gbkey=CDS;gene=pduH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000377968.1;locus_tag=C9F05_RS14815;product=propanediol dehydratase reactivase beta subunit PduH;protein_id=WP_000377970.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	6315	6590	.	+	.	ID=gene-C9F05_RS14820;Name=pduJ;gbkey=Gene;gene=pduJ;gene_biotype=protein_coding;locus_tag=C9F05_RS14820;old_locus_tag=C9F05_15235
NZ_PYKE01000227.1	Protein Homology	CDS	6315	6590	.	+	0	ID=cds-WP_001057755.1;Parent=gene-C9F05_RS14820;Dbxref=GenBank:WP_001057755.1;Name=WP_001057755.1;gbkey=CDS;gene=pduJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460990.1;locus_tag=C9F05_RS14820;product=propanediol utilization microcompartment protein PduJ;protein_id=WP_001057755.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	6594	7076	.	+	.	ID=gene-C9F05_RS14825;Name=pduK;gbkey=Gene;gene=pduK;gene_biotype=protein_coding;locus_tag=C9F05_RS14825;old_locus_tag=C9F05_15240
NZ_PYKE01000227.1	Protein Homology	CDS	6594	7076	.	+	0	ID=cds-WP_077943427.1;Parent=gene-C9F05_RS14825;Dbxref=GenBank:WP_077943427.1;Name=WP_077943427.1;gbkey=CDS;gene=pduK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460991.3;locus_tag=C9F05_RS14825;product=propanediol utilization microcompartment protein PduK;protein_id=WP_077943427.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	7076	7708	.	+	.	ID=gene-C9F05_RS14830;Name=C9F05_RS14830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14830;old_locus_tag=C9F05_15245
NZ_PYKE01000227.1	Protein Homology	CDS	7076	7708	.	+	0	ID=cds-WP_135370417.1;Parent=gene-C9F05_RS14830;Dbxref=GenBank:WP_135370417.1;Name=WP_135370417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460992.1;locus_tag=C9F05_RS14830;product=phosphate propanoyltransferase;protein_id=WP_135370417.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	7705	8196	.	+	.	ID=gene-C9F05_RS14835;Name=pduM;gbkey=Gene;gene=pduM;gene_biotype=protein_coding;locus_tag=C9F05_RS14835;old_locus_tag=C9F05_15250
NZ_PYKE01000227.1	Protein Homology	CDS	7705	8196	.	+	0	ID=cds-WP_135370418.1;Parent=gene-C9F05_RS14835;Dbxref=GenBank:WP_135370418.1;Name=WP_135370418.1;gbkey=CDS;gene=pduM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460993.1;locus_tag=C9F05_RS14835;product=propanediol utilization microcompartment protein PduM;protein_id=WP_135370418.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	8200	8475	.	+	.	ID=gene-C9F05_RS14840;Name=pduN;gbkey=Gene;gene=pduN;gene_biotype=protein_coding;locus_tag=C9F05_RS14840;old_locus_tag=C9F05_15255
NZ_PYKE01000227.1	Protein Homology	CDS	8200	8475	.	+	0	ID=cds-WP_000549825.1;Parent=gene-C9F05_RS14840;Dbxref=GenBank:WP_000549825.1;Name=WP_000549825.1;gbkey=CDS;gene=pduN;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228577.1;locus_tag=C9F05_RS14840;product=propanediol utilization microcompartment protein PduN;protein_id=WP_000549825.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	8485	9495	.	+	.	ID=gene-C9F05_RS14845;Name=pduO;gbkey=Gene;gene=pduO;gene_biotype=protein_coding;locus_tag=C9F05_RS14845;old_locus_tag=C9F05_15260
NZ_PYKE01000227.1	Protein Homology	CDS	8485	9495	.	+	0	ID=cds-WP_135370419.1;Parent=gene-C9F05_RS14845;Dbxref=GenBank:WP_135370419.1;Name=WP_135370419.1;gbkey=CDS;gene=pduO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460995.1;locus_tag=C9F05_RS14845;product=two-domain cob(I)yrinic acid a%2Cc-diamide adenosyltransferase PduO;protein_id=WP_135370419.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	9492	10886	.	+	.	ID=gene-C9F05_RS14850;Name=pduP;gbkey=Gene;gene=pduP;gene_biotype=protein_coding;locus_tag=C9F05_RS14850;old_locus_tag=C9F05_15265
NZ_PYKE01000227.1	Protein Homology	CDS	9492	10886	.	+	0	ID=cds-WP_135370420.1;Parent=gene-C9F05_RS14850;Dbxref=GenBank:WP_135370420.1;Name=WP_135370420.1;gbkey=CDS;gene=pduP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460996.1;locus_tag=C9F05_RS14850;product=CoA-acylating propionaldehyde dehydrogenase PduP;protein_id=WP_135370420.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	10898	12010	.	+	.	ID=gene-C9F05_RS14855;Name=pduQ;gbkey=Gene;gene=pduQ;gene_biotype=protein_coding;locus_tag=C9F05_RS14855;old_locus_tag=C9F05_15270
NZ_PYKE01000227.1	Protein Homology	CDS	10898	12010	.	+	0	ID=cds-WP_135370421.1;Parent=gene-C9F05_RS14855;Dbxref=GenBank:WP_135370421.1;Name=WP_135370421.1;gbkey=CDS;gene=pduQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460997.1;locus_tag=C9F05_RS14855;product=1-propanol dehydrogenase PduQ;protein_id=WP_135370421.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	12007	13362	.	+	.	ID=gene-C9F05_RS14860;Name=pduS;gbkey=Gene;gene=pduS;gene_biotype=protein_coding;locus_tag=C9F05_RS14860;old_locus_tag=C9F05_15275
NZ_PYKE01000227.1	Protein Homology	CDS	12007	13362	.	+	0	ID=cds-WP_135370422.1;Parent=gene-C9F05_RS14860;Dbxref=GenBank:WP_135370422.1;Name=WP_135370422.1;gbkey=CDS;gene=pduS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460998.1;locus_tag=C9F05_RS14860;product=cobalamin reductase PduS;protein_id=WP_135370422.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	13365	13919	.	+	.	ID=gene-C9F05_RS14865;Name=pduT;gbkey=Gene;gene=pduT;gene_biotype=protein_coding;locus_tag=C9F05_RS14865;old_locus_tag=C9F05_15280
NZ_PYKE01000227.1	Protein Homology	CDS	13365	13919	.	+	0	ID=cds-WP_000075772.1;Parent=gene-C9F05_RS14865;Dbxref=GenBank:WP_000075772.1;Name=WP_000075772.1;gbkey=CDS;gene=pduT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460999.1;locus_tag=C9F05_RS14865;product=propanediol utilization microcompartment protein PduT;protein_id=WP_000075772.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	13919	14269	.	+	.	ID=gene-C9F05_RS14870;Name=pduU;gbkey=Gene;gene=pduU;gene_biotype=protein_coding;locus_tag=C9F05_RS14870;old_locus_tag=C9F05_15285
NZ_PYKE01000227.1	Protein Homology	CDS	13919	14269	.	+	0	ID=cds-WP_000441103.1;Parent=gene-C9F05_RS14870;Dbxref=GenBank:WP_000441103.1;Name=WP_000441103.1;gbkey=CDS;gene=pduU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461000.1;locus_tag=C9F05_RS14870;product=propanediol utilization microcompartment protein PduU;protein_id=WP_000441103.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	14274	14726	.	+	.	ID=gene-C9F05_RS14875;Name=pduV;gbkey=Gene;gene=pduV;gene_biotype=protein_coding;locus_tag=C9F05_RS14875;old_locus_tag=C9F05_15290
NZ_PYKE01000227.1	Protein Homology	CDS	14274	14726	.	+	0	ID=cds-WP_000826277.1;Parent=gene-C9F05_RS14875;Dbxref=GenBank:WP_000826277.1;Name=WP_000826277.1;gbkey=CDS;gene=pduV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461001.1;locus_tag=C9F05_RS14875;product=propanediol utilization protein PduV;protein_id=WP_000826277.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	14711	15925	.	+	.	ID=gene-C9F05_RS14880;Name=pduW;gbkey=Gene;gene=pduW;gene_biotype=protein_coding;locus_tag=C9F05_RS14880;old_locus_tag=C9F05_15295
NZ_PYKE01000227.1	Protein Homology	CDS	14711	15925	.	+	0	ID=cds-WP_023204607.1;Parent=gene-C9F05_RS14880;Dbxref=GenBank:WP_023204607.1;Name=WP_023204607.1;gbkey=CDS;gene=pduW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461002.1;locus_tag=C9F05_RS14880;product=propanediol utilization propionate kinase PduW;protein_id=WP_023204607.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	16019	16885	.	+	.	ID=gene-C9F05_RS14885;Name=pduX;gbkey=Gene;gene=pduX;gene_biotype=protein_coding;locus_tag=C9F05_RS14885;old_locus_tag=C9F05_15300
NZ_PYKE01000227.1	Protein Homology	CDS	16019	16885	.	+	0	ID=cds-WP_135370423.1;Parent=gene-C9F05_RS14885;Dbxref=GenBank:WP_135370423.1;Name=WP_135370423.1;gbkey=CDS;gene=pduX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632997.1;locus_tag=C9F05_RS14885;product=L-threonine kinase PduX;protein_id=WP_135370423.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	16919	17254	.	-	.	ID=gene-C9F05_RS14890;Name=C9F05_RS14890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14890;old_locus_tag=C9F05_15305
NZ_PYKE01000227.1	Protein Homology	CDS	16919	17254	.	-	0	ID=cds-WP_000450405.1;Parent=gene-C9F05_RS14890;Dbxref=GenBank:WP_000450405.1;Name=WP_000450405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461004.1;locus_tag=C9F05_RS14890;product=DUF496 family protein;protein_id=WP_000450405.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	17499	18557	.	-	.	ID=gene-C9F05_RS14895;Name=C9F05_RS14895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14895;old_locus_tag=C9F05_15310
NZ_PYKE01000227.1	Protein Homology	CDS	17499	18557	.	-	0	ID=cds-WP_001200854.1;Parent=gene-C9F05_RS14895;Dbxref=GenBank:WP_001200854.1;Name=WP_001200854.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461005.1;locus_tag=C9F05_RS14895;product=FUSC family protein;protein_id=WP_001200854.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	18676	19143	.	-	.	ID=gene-C9F05_RS14900;Name=sbmC;gbkey=Gene;gene=sbmC;gene_biotype=protein_coding;locus_tag=C9F05_RS14900;old_locus_tag=C9F05_15320
NZ_PYKE01000227.1	Protein Homology	CDS	18676	19143	.	-	0	ID=cds-WP_000384326.1;Parent=gene-C9F05_RS14900;Dbxref=GenBank:WP_000384326.1;Name=WP_000384326.1;gbkey=CDS;gene=sbmC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461006.1;locus_tag=C9F05_RS14900;product=DNA gyrase inhibitor SbmC;protein_id=WP_000384326.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	19294	20466	.	-	.	ID=gene-C9F05_RS14905;Name=dacD;gbkey=Gene;gene=dacD;gene_biotype=protein_coding;locus_tag=C9F05_RS14905;old_locus_tag=C9F05_15325
NZ_PYKE01000227.1	Protein Homology	CDS	19294	20466	.	-	0	ID=cds-WP_000925039.1;Parent=gene-C9F05_RS14905;Dbxref=GenBank:WP_000925039.1;Name=WP_000925039.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=dacD;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461007.1;locus_tag=C9F05_RS14905;product=serine-type D-Ala-D-Ala carboxypeptidase DacD;protein_id=WP_000925039.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	20590	21354	.	-	.	ID=gene-C9F05_RS14910;Name=phsC;gbkey=Gene;gene=phsC;gene_biotype=protein_coding;locus_tag=C9F05_RS14910;old_locus_tag=C9F05_15330
NZ_PYKE01000227.1	Protein Homology	CDS	20590	21354	.	-	0	ID=cds-WP_001092553.1;Parent=gene-C9F05_RS14910;Dbxref=GenBank:WP_001092553.1;Name=WP_001092553.1;gbkey=CDS;gene=phsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461008.1;locus_tag=C9F05_RS14910;product=thiosulfate reductase cytochrome B subunit;protein_id=WP_001092553.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	21351	21929	.	-	.	ID=gene-C9F05_RS14915;Name=phsB;gbkey=Gene;gene=phsB;gene_biotype=protein_coding;locus_tag=C9F05_RS14915;old_locus_tag=C9F05_15335
NZ_PYKE01000227.1	Protein Homology	CDS	21351	21929	.	-	0	ID=cds-WP_001016236.1;Parent=gene-C9F05_RS14915;Dbxref=GenBank:WP_001016236.1;Name=WP_001016236.1;gbkey=CDS;gene=phsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461009.1;locus_tag=C9F05_RS14915;product=thiosulfate reductase electron transport protein PhsB;protein_id=WP_001016236.1;transl_table=11
NZ_PYKE01000227.1	RefSeq	gene	21944	24220	.	-	.	ID=gene-C9F05_RS14920;Name=phsA;gbkey=Gene;gene=phsA;gene_biotype=protein_coding;locus_tag=C9F05_RS14920;old_locus_tag=C9F05_15340
NZ_PYKE01000227.1	Protein Homology	CDS	21944	24220	.	-	0	ID=cds-WP_001523462.1;Parent=gene-C9F05_RS14920;Dbxref=GenBank:WP_001523462.1;Name=WP_001523462.1;Ontology_term=GO:0016491,GO:0043546,GO:0051539;gbkey=CDS;gene=phsA;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461010.1;locus_tag=C9F05_RS14920;product=thiosulfate reductase PhsA;protein_id=WP_001523462.1;transl_table=11
##sequence-region NZ_PYKE01000184.1 1 1998
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000184.1	RefSeq	region	1	1998	.	+	.	ID=NZ_PYKE01000184.1:1..1998;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000184.1	RefSeq	gene	1	455	.	-	.	ID=gene-C9F05_RS12310;Name=C9F05_RS12310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12310;old_locus_tag=C9F05_12660;partial=true;start_range=.,1
NZ_PYKE01000184.1	Protein Homology	CDS	1	455	.	-	0	ID=cds-WP_135370322.1;Parent=gene-C9F05_RS12310;Dbxref=GenBank:WP_135370322.1;Name=WP_135370322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000120036.1;locus_tag=C9F05_RS12310;partial=true;product=Imm26 family immunity protein;protein_id=WP_135370322.1;start_range=.,1;transl_table=11
NZ_PYKE01000184.1	RefSeq	gene	974	1420	.	-	.	ID=gene-C9F05_RS12315;Name=sciX;gbkey=Gene;gene=sciX;gene_biotype=protein_coding;locus_tag=C9F05_RS12315;old_locus_tag=C9F05_12665
NZ_PYKE01000184.1	Protein Homology	CDS	974	1420	.	-	0	ID=cds-WP_000935097.1;Parent=gene-C9F05_RS12315;Dbxref=GenBank:WP_000935097.1;Name=WP_000935097.1;gbkey=CDS;gene=sciX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459291.1;locus_tag=C9F05_RS12315;product=protein SciX;protein_id=WP_000935097.1;transl_table=11
NZ_PYKE01000184.1	RefSeq	pseudogene	1414	1887	.	-	.	ID=gene-C9F05_RS12320;Name=C9F05_RS12320;end_range=1887,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS12320;old_locus_tag=C9F05_12670;partial=true;pseudo=true
NZ_PYKE01000184.1	Protein Homology	CDS	1414	1887	.	-	0	ID=cds-C9F05_RS12320;Parent=gene-C9F05_RS12320;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1887,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000272651.1;locus_tag=C9F05_RS12320;partial=true;product=polymorphic toxin type 47 domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000091.1 1 1967
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000091.1	RefSeq	region	1	1967	.	+	.	ID=NZ_PYKE01000091.1:1..1967;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000091.1	RefSeq	gene	9	1301	.	-	.	ID=gene-C9F05_RS06475;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=C9F05_RS06475;old_locus_tag=C9F05_06610
NZ_PYKE01000091.1	Protein Homology	CDS	9	1301	.	-	0	ID=cds-WP_001562341.1;Parent=gene-C9F05_RS06475;Dbxref=GenBank:WP_001562341.1;Name=WP_001562341.1;Ontology_term=GO:0017038,GO:0005215,GO:0042597;gbkey=CDS;gene=tolB;go_component=periplasmic space|0042597||IEA;go_function=transporter activity|0005215||IEA;go_process=protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001646851.1;locus_tag=C9F05_RS06475;product=Tol-Pal system beta propeller repeat protein TolB;protein_id=WP_001562341.1;transl_table=11
NZ_PYKE01000091.1	RefSeq	gene	1425	1967	.	-	.	ID=gene-C9F05_RS06480;Name=tolA;end_range=1967,.;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=C9F05_RS06480;old_locus_tag=C9F05_06615;partial=true
NZ_PYKE01000091.1	Protein Homology	CDS	1425	1967	.	-	0	ID=cds-WP_135370123.1;Parent=gene-C9F05_RS06480;Dbxref=GenBank:WP_135370123.1;Name=WP_135370123.1;Ontology_term=GO:0043213,GO:0019534,GO:0016020;end_range=1967,.;gbkey=CDS;gene=tolA;go_component=membrane|0016020||IEA;go_function=toxin transmembrane transporter activity|0019534||IEA;go_process=bacteriocin transport|0043213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459732.1;locus_tag=C9F05_RS06480;partial=true;product=cell envelope integrity protein TolA;protein_id=WP_135370123.1;transl_table=11
##sequence-region NZ_PYKE01000247.1 1 23695
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000247.1	RefSeq	region	1	23695	.	+	.	ID=NZ_PYKE01000247.1:1..23695;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000247.1	RefSeq	gene	1	410	.	-	.	ID=gene-C9F05_RS15850;Name=C9F05_RS15850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15850;old_locus_tag=C9F05_16290;partial=true;start_range=.,1
NZ_PYKE01000247.1	Protein Homology	CDS	1	410	.	-	0	ID=cds-WP_135370456.1;Parent=gene-C9F05_RS15850;Dbxref=GenBank:WP_135370456.1;Name=WP_135370456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461420.1;locus_tag=C9F05_RS15850;partial=true;product=tRNA(Met) cytidine acetyltransferase TmcA domain-containing protein;protein_id=WP_135370456.1;start_range=.,1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	426	1289	.	-	.	ID=gene-C9F05_RS15855;Name=ypfJ;gbkey=Gene;gene=ypfJ;gene_biotype=protein_coding;locus_tag=C9F05_RS15855;old_locus_tag=C9F05_16295
NZ_PYKE01000247.1	Protein Homology	CDS	426	1289	.	-	0	ID=cds-WP_001267523.1;Parent=gene-C9F05_RS15855;Dbxref=GenBank:WP_001267523.1;Name=WP_001267523.1;gbkey=CDS;gene=ypfJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461421.1;locus_tag=C9F05_RS15855;product=KPN_02809 family neutral zinc metallopeptidase;protein_id=WP_001267523.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	1420	2133	.	-	.	ID=gene-C9F05_RS15860;Name=purC;gbkey=Gene;gene=purC;gene_biotype=protein_coding;locus_tag=C9F05_RS15860;old_locus_tag=C9F05_16300
NZ_PYKE01000247.1	Protein Homology	CDS	1420	2133	.	-	0	ID=cds-WP_001171630.1;Parent=gene-C9F05_RS15860;Dbxref=GenBank:WP_001171630.1;Name=WP_001171630.1;Ontology_term=GO:0006164,GO:0004639;gbkey=CDS;gene=purC;go_function=phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|0004639||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017458944.1;locus_tag=C9F05_RS15860;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_001171630.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	2308	3342	.	-	.	ID=gene-C9F05_RS15865;Name=bamC;gbkey=Gene;gene=bamC;gene_biotype=protein_coding;locus_tag=C9F05_RS15865;old_locus_tag=C9F05_16305
NZ_PYKE01000247.1	Protein Homology	CDS	2308	3342	.	-	0	ID=cds-WP_000331880.1;Parent=gene-C9F05_RS15865;Dbxref=GenBank:WP_000331880.1;Name=WP_000331880.1;gbkey=CDS;gene=bamC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461423.1;locus_tag=C9F05_RS15865;product=outer membrane protein assembly factor BamC;protein_id=WP_000331880.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	3359	4237	.	-	.	ID=gene-C9F05_RS15870;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=C9F05_RS15870;old_locus_tag=C9F05_16310
NZ_PYKE01000247.1	Protein Homology	CDS	3359	4237	.	-	0	ID=cds-WP_135370457.1;Parent=gene-C9F05_RS15870;Dbxref=GenBank:WP_135370457.1;Name=WP_135370457.1;Ontology_term=GO:0009089,GO:0008840;gbkey=CDS;gene=dapA;go_function=4-hydroxy-tetrahydrodipicolinate synthase activity|0008840||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001311023.1;locus_tag=C9F05_RS15870;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_135370457.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	4383	4955	.	+	.	ID=gene-C9F05_RS15875;Name=C9F05_RS15875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15875;old_locus_tag=C9F05_16315
NZ_PYKE01000247.1	Protein Homology	CDS	4383	4955	.	+	0	ID=cds-WP_000189061.1;Parent=gene-C9F05_RS15875;Dbxref=GenBank:WP_000189061.1;Name=WP_000189061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708318.1;locus_tag=C9F05_RS15875;product=glycine cleavage system transcriptional repressor;protein_id=WP_000189061.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	4955	5425	.	+	.	ID=gene-C9F05_RS15880;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;locus_tag=C9F05_RS15880;old_locus_tag=C9F05_16320
NZ_PYKE01000247.1	Protein Homology	CDS	4955	5425	.	+	0	ID=cds-WP_001068686.1;Parent=gene-C9F05_RS15880;Dbxref=GenBank:WP_001068686.1;Name=WP_001068686.1;Ontology_term=GO:0016209,GO:0016491;gbkey=CDS;gene=bcp;go_function=antioxidant activity|0016209||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461426.1;locus_tag=C9F05_RS15880;product=thioredoxin-dependent thiol peroxidase;protein_id=WP_001068686.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	5472	6611	.	-	.	ID=gene-C9F05_RS15885;Name=C9F05_RS15885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15885;old_locus_tag=C9F05_16325
NZ_PYKE01000247.1	Protein Homology	CDS	5472	6611	.	-	0	ID=cds-WP_135370458.1;Parent=gene-C9F05_RS15885;Dbxref=GenBank:WP_135370458.1;Name=WP_135370458.1;Ontology_term=GO:0005524,GO:0008887;gbkey=CDS;go_function=ATP binding|0005524||IEA,glycerate kinase activity|0008887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000706371.1;locus_tag=C9F05_RS15885;product=glycerate kinase;protein_id=WP_135370458.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	6617	7885	.	-	.	ID=gene-C9F05_RS15890;Name=C9F05_RS15890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15890;old_locus_tag=C9F05_16330
NZ_PYKE01000247.1	Protein Homology	CDS	6617	7885	.	-	0	ID=cds-WP_135370459.1;Parent=gene-C9F05_RS15890;Dbxref=GenBank:WP_135370459.1;Name=WP_135370459.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090684.1;locus_tag=C9F05_RS15890;product=GntP family permease;protein_id=WP_135370459.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	7953	9140	.	-	.	ID=gene-C9F05_RS15895;Name=C9F05_RS15895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15895;old_locus_tag=C9F05_16335
NZ_PYKE01000247.1	Protein Homology	CDS	7953	9140	.	-	0	ID=cds-WP_001533732.1;Parent=gene-C9F05_RS15895;Dbxref=GenBank:WP_001533732.1;Name=WP_001533732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001667973.1;locus_tag=C9F05_RS15895;product=sugar diacid recognition domain-containing protein;protein_id=WP_001533732.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	9417	10484	.	-	.	ID=gene-C9F05_RS15900;Name=C9F05_RS15900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15900;old_locus_tag=C9F05_16340
NZ_PYKE01000247.1	Protein Homology	CDS	9417	10484	.	-	0	ID=cds-WP_000892057.1;Parent=gene-C9F05_RS15900;Dbxref=GenBank:WP_000892057.1;Name=WP_000892057.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461428.1;locus_tag=C9F05_RS15900;product=AI-2E family transporter;protein_id=WP_000892057.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	10692	12155	.	+	.	ID=gene-C9F05_RS15905;Name=bepA;gbkey=Gene;gene=bepA;gene_biotype=protein_coding;locus_tag=C9F05_RS15905;old_locus_tag=C9F05_16345
NZ_PYKE01000247.1	Protein Homology	CDS	10692	12155	.	+	0	ID=cds-WP_000489630.1;Parent=gene-C9F05_RS15905;Dbxref=GenBank:WP_000489630.1;Name=WP_000489630.1;gbkey=CDS;gene=bepA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461429.1;locus_tag=C9F05_RS15905;product=beta-barrel assembly-enhancing protease;protein_id=WP_000489630.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	12195	12554	.	+	.	ID=gene-C9F05_RS15910;Name=arsC;gbkey=Gene;gene=arsC;gene_biotype=protein_coding;locus_tag=C9F05_RS15910;old_locus_tag=C9F05_16350
NZ_PYKE01000247.1	Protein Homology	CDS	12195	12554	.	+	0	ID=cds-WP_000132650.1;Parent=gene-C9F05_RS15910;Dbxref=GenBank:WP_000132650.1;Name=WP_000132650.1;Note=This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite%2C after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell%2C providing resistance.;Ontology_term=GO:0046685,GO:0008794;gbkey=CDS;gene=arsC;go_function=arsenate reductase (glutaredoxin) activity|0008794||IEA;go_process=response to arsenic-containing substance|0046685||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461430.1;locus_tag=C9F05_RS15910;product=arsenate reductase (glutaredoxin);protein_id=WP_000132650.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	12581	13282	.	-	.	ID=gene-C9F05_RS15915;Name=C9F05_RS15915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15915;old_locus_tag=C9F05_16355
NZ_PYKE01000247.1	Protein Homology	CDS	12581	13282	.	-	0	ID=cds-WP_061835882.1;Parent=gene-C9F05_RS15915;Dbxref=GenBank:WP_061835882.1;Name=WP_061835882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416991.2;locus_tag=C9F05_RS15915;product=DnaA inactivator Hda;protein_id=WP_061835882.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	13377	14666	.	-	.	ID=gene-C9F05_RS15920;Name=uraA;gbkey=Gene;gene=uraA;gene_biotype=protein_coding;locus_tag=C9F05_RS15920;old_locus_tag=C9F05_16360
NZ_PYKE01000247.1	Protein Homology	CDS	13377	14666	.	-	0	ID=cds-WP_000198339.1;Parent=gene-C9F05_RS15920;Dbxref=GenBank:WP_000198339.1;Name=WP_000198339.1;Ontology_term=GO:0022857;gbkey=CDS;gene=uraA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461432.1;locus_tag=C9F05_RS15920;product=uracil permease;protein_id=WP_000198339.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	14754	15380	.	-	.	ID=gene-C9F05_RS15925;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=C9F05_RS15925;old_locus_tag=C9F05_16365
NZ_PYKE01000247.1	Protein Homology	CDS	14754	15380	.	-	0	ID=cds-WP_000706208.1;Parent=gene-C9F05_RS15925;Dbxref=GenBank:WP_000706208.1;Name=WP_000706208.1;Ontology_term=GO:0009116,GO:0004845;gbkey=CDS;gene=upp;go_function=uracil phosphoribosyltransferase activity|0004845||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001295473.1;locus_tag=C9F05_RS15925;product=uracil phosphoribosyltransferase;protein_id=WP_000706208.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	15793	16830	.	+	.	ID=gene-C9F05_RS15930;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=C9F05_RS15930;old_locus_tag=C9F05_16370
NZ_PYKE01000247.1	Protein Homology	CDS	15793	16830	.	+	0	ID=cds-WP_000130475.1;Parent=gene-C9F05_RS15930;Dbxref=GenBank:WP_000130475.1;Name=WP_000130475.1;Ontology_term=GO:0006189,GO:0004641;gbkey=CDS;gene=purM;go_function=phosphoribosylformylglycinamidine cyclo-ligase activity|0004641||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001656828.1;locus_tag=C9F05_RS15930;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_000130475.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	16830	17468	.	+	.	ID=gene-C9F05_RS15935;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=C9F05_RS15935;old_locus_tag=C9F05_16375
NZ_PYKE01000247.1	Protein Homology	CDS	16830	17468	.	+	0	ID=cds-WP_001028589.1;Parent=gene-C9F05_RS15935;Dbxref=GenBank:WP_001028589.1;Name=WP_001028589.1;Ontology_term=GO:0006189,GO:0004644;gbkey=CDS;gene=purN;go_function=phosphoribosylglycinamide formyltransferase activity|0004644||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461435.1;locus_tag=C9F05_RS15935;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_001028589.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	17657	19723	.	+	.	ID=gene-C9F05_RS15940;Name=ppk1;gbkey=Gene;gene=ppk1;gene_biotype=protein_coding;locus_tag=C9F05_RS15940;old_locus_tag=C9F05_16380
NZ_PYKE01000247.1	Protein Homology	CDS	17657	19723	.	+	0	ID=cds-WP_000529555.1;Parent=gene-C9F05_RS15940;Dbxref=GenBank:WP_000529555.1;Name=WP_000529555.1;Ontology_term=GO:0006799,GO:0008976,GO:0009358;gbkey=CDS;gene=ppk1;go_component=polyphosphate kinase complex|0009358||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=polyphosphate biosynthetic process|0006799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461436.1;locus_tag=C9F05_RS15940;product=polyphosphate kinase 1;protein_id=WP_000529555.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	19728	21269	.	+	.	ID=gene-C9F05_RS15945;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=C9F05_RS15945;old_locus_tag=C9F05_16385
NZ_PYKE01000247.1	Protein Homology	CDS	19728	21269	.	+	0	ID=cds-WP_001123330.1;Parent=gene-C9F05_RS15945;Dbxref=GenBank:WP_001123330.1;Name=WP_001123330.1;Ontology_term=GO:0006798,GO:0000287,GO:0004309;gbkey=CDS;gene=ppx;go_function=magnesium ion binding|0000287||IEA,exopolyphosphatase activity|0004309||IEA;go_process=polyphosphate catabolic process|0006798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461437.1;locus_tag=C9F05_RS15945;product=exopolyphosphatase;protein_id=WP_001123330.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	gene	21305	23518	.	-	.	ID=gene-C9F05_RS15950;Name=C9F05_RS15950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15950;old_locus_tag=C9F05_16390
NZ_PYKE01000247.1	Protein Homology	CDS	21305	23518	.	-	0	ID=cds-WP_000773647.1;Parent=gene-C9F05_RS15950;Dbxref=GenBank:WP_000773647.1;Name=WP_000773647.1;Ontology_term=GO:0007165,GO:0005525,GO:0046872,GO:0052621,GO:0071111;gbkey=CDS;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA,cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461438.1;locus_tag=C9F05_RS15950;product=bifunctional diguanylate cyclase/phosphodiesterase;protein_id=WP_000773647.1;transl_table=11
NZ_PYKE01000247.1	RefSeq	pseudogene	23615	23695	.	-	.	ID=gene-C9F05_RS23880;Name=C9F05_RS23880;end_range=23695,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23880;partial=true;pseudo=true
NZ_PYKE01000247.1	Protein Homology	CDS	23615	23695	.	-	0	ID=cds-C9F05_RS23880;Parent=gene-C9F05_RS23880;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=23695,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448898.1;locus_tag=C9F05_RS23880;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000199.1 1 65295
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000199.1	RefSeq	region	1	65295	.	+	.	ID=NZ_PYKE01000199.1:1..65295;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000199.1	RefSeq	gene	212	3157	.	+	.	ID=gene-C9F05_RS12870;Name=C9F05_RS12870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12870;old_locus_tag=C9F05_13240
NZ_PYKE01000199.1	Protein Homology	CDS	212	3157	.	+	0	ID=cds-WP_094914576.1;Parent=gene-C9F05_RS12870;Dbxref=GenBank:WP_094914576.1;Name=WP_094914576.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459368.1;locus_tag=C9F05_RS12870;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_094914576.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	3243	3866	.	+	.	ID=gene-C9F05_RS12875;Name=iprA;gbkey=Gene;gene=iprA;gene_biotype=protein_coding;locus_tag=C9F05_RS12875;old_locus_tag=C9F05_13245
NZ_PYKE01000199.1	Protein Homology	CDS	3243	3866	.	+	0	ID=cds-WP_000950242.1;Parent=gene-C9F05_RS12875;Dbxref=GenBank:WP_000950242.1;Name=WP_000950242.1;gbkey=CDS;gene=iprA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459369.1;locus_tag=C9F05_RS12875;product=hydrogen peroxide resistance inhibitor IprA;protein_id=WP_000950242.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	3911	5068	.	-	.	ID=gene-C9F05_RS12880;Name=ampH;gbkey=Gene;gene=ampH;gene_biotype=protein_coding;locus_tag=C9F05_RS12880;old_locus_tag=C9F05_13250
NZ_PYKE01000199.1	Protein Homology	CDS	3911	5068	.	-	0	ID=cds-WP_000830775.1;Parent=gene-C9F05_RS12880;Dbxref=GenBank:WP_000830775.1;Name=WP_000830775.1;gbkey=CDS;gene=ampH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308453.1;locus_tag=C9F05_RS12880;product=D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH;protein_id=WP_000830775.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	5415	6635	.	+	.	ID=gene-C9F05_RS12890;Name=sbmA;gbkey=Gene;gene=sbmA;gene_biotype=protein_coding;locus_tag=C9F05_RS12890;old_locus_tag=C9F05_13260
NZ_PYKE01000199.1	Protein Homology	CDS	5415	6635	.	+	0	ID=cds-WP_000477023.1;Parent=gene-C9F05_RS12890;Dbxref=GenBank:WP_000477023.1;Name=WP_000477023.1;Ontology_term=GO:0015833,GO:1904680;gbkey=CDS;gene=sbmA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459371.1;locus_tag=C9F05_RS12890;product=peptide antibiotic transporter SbmA;protein_id=WP_000477023.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	6650	7744	.	+	.	ID=gene-C9F05_RS12895;Name=yaiW;gbkey=Gene;gene=yaiW;gene_biotype=protein_coding;locus_tag=C9F05_RS12895;old_locus_tag=C9F05_13265
NZ_PYKE01000199.1	Protein Homology	CDS	6650	7744	.	+	0	ID=cds-WP_001271421.1;Parent=gene-C9F05_RS12895;Dbxref=GenBank:WP_001271421.1;Name=WP_001271421.1;gbkey=CDS;gene=yaiW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459372.1;locus_tag=C9F05_RS12895;product=surface-exposed outer membrane lipoprotein YaiW;protein_id=WP_001271421.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	7782	8090	.	-	.	ID=gene-C9F05_RS12900;Name=C9F05_RS12900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12900;old_locus_tag=C9F05_13270
NZ_PYKE01000199.1	Protein Homology	CDS	7782	8090	.	-	0	ID=cds-WP_000763139.1;Parent=gene-C9F05_RS12900;Dbxref=GenBank:WP_000763139.1;Name=WP_000763139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459373.1;locus_tag=C9F05_RS12900;product=YaiY family protein;protein_id=WP_000763139.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	8358	8573	.	+	.	ID=gene-C9F05_RS12905;Name=C9F05_RS12905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12905;old_locus_tag=C9F05_13275
NZ_PYKE01000199.1	Protein Homology	CDS	8358	8573	.	+	0	ID=cds-WP_001239242.1;Parent=gene-C9F05_RS12905;Dbxref=GenBank:WP_001239242.1;Name=WP_001239242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459374.1;locus_tag=C9F05_RS12905;product=DUF2754 family protein;protein_id=WP_001239242.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	8599	9693	.	-	.	ID=gene-C9F05_RS12910;Name=ddlA;gbkey=Gene;gene=ddlA;gene_biotype=protein_coding;locus_tag=C9F05_RS12910;old_locus_tag=C9F05_13280
NZ_PYKE01000199.1	Protein Homology	CDS	8599	9693	.	-	0	ID=cds-WP_001096588.1;Parent=gene-C9F05_RS12910;Dbxref=GenBank:WP_001096588.1;Name=WP_001096588.1;Ontology_term=GO:0008716;gbkey=CDS;gene=ddlA;go_function=D-alanine-D-alanine ligase activity|0008716||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459375.1;locus_tag=C9F05_RS12910;product=D-alanine--D-alanine ligase;protein_id=WP_001096588.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	9771	10484	.	+	.	ID=gene-C9F05_RS12915;Name=C9F05_RS12915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12915;old_locus_tag=C9F05_13285
NZ_PYKE01000199.1	Protein Homology	CDS	9771	10484	.	+	0	ID=cds-WP_050068204.1;Parent=gene-C9F05_RS12915;Dbxref=GenBank:WP_050068204.1;Name=WP_050068204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459376.1;locus_tag=C9F05_RS12915;product=extensin-like domain-containing protein;protein_id=WP_050068204.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	10653	11864	.	+	.	ID=gene-C9F05_RS12920;Name=C9F05_RS12920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12920;old_locus_tag=C9F05_13290
NZ_PYKE01000199.1	Protein Homology	CDS	10653	11864	.	+	0	ID=cds-WP_000446772.1;Parent=gene-C9F05_RS12920;Dbxref=GenBank:WP_000446772.1;Name=WP_000446772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459377.1;locus_tag=C9F05_RS12920;product=multidrug efflux MFS transporter;protein_id=WP_000446772.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	12161	12421	.	+	.	ID=gene-C9F05_RS12925;Name=iraP;gbkey=Gene;gene=iraP;gene_biotype=protein_coding;locus_tag=C9F05_RS12925;old_locus_tag=C9F05_13295
NZ_PYKE01000199.1	Protein Homology	CDS	12161	12421	.	+	0	ID=cds-WP_001518423.1;Parent=gene-C9F05_RS12925;Dbxref=GenBank:WP_001518423.1;Name=WP_001518423.1;gbkey=CDS;gene=iraP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748986.1;locus_tag=C9F05_RS12925;product=anti-adapter protein IraP;protein_id=WP_001518423.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	12770	13090	.	+	.	ID=gene-C9F05_RS12930;Name=psiF;gbkey=Gene;gene=psiF;gene_biotype=protein_coding;locus_tag=C9F05_RS12930;old_locus_tag=C9F05_13300
NZ_PYKE01000199.1	Protein Homology	CDS	12770	13090	.	+	0	ID=cds-WP_000705165.1;Parent=gene-C9F05_RS12930;Dbxref=GenBank:WP_000705165.1;Name=WP_000705165.1;gbkey=CDS;gene=psiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459379.1;locus_tag=C9F05_RS12930;product=phosphate starvation-inducible protein PsiF;protein_id=WP_000705165.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	13182	14294	.	+	.	ID=gene-C9F05_RS12935;Name=adrA;gbkey=Gene;gene=adrA;gene_biotype=protein_coding;gene_synonym=dgcC;locus_tag=C9F05_RS12935;old_locus_tag=C9F05_13305
NZ_PYKE01000199.1	Protein Homology	CDS	13182	14294	.	+	0	ID=cds-WP_135370342.1;Parent=gene-C9F05_RS12935;Dbxref=GenBank:WP_135370342.1;Name=WP_135370342.1;gbkey=CDS;gene=adrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459380.1;locus_tag=C9F05_RS12935;product=diguanylate cyclase AdrA;protein_id=WP_135370342.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	14309	15118	.	-	.	ID=gene-C9F05_RS12940;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=C9F05_RS12940;old_locus_tag=C9F05_13310
NZ_PYKE01000199.1	Protein Homology	CDS	14309	15118	.	-	0	ID=cds-WP_000412193.1;Parent=gene-C9F05_RS12940;Dbxref=GenBank:WP_000412193.1;Name=WP_000412193.1;Ontology_term=GO:0055129,GO:0004735;gbkey=CDS;gene=proC;go_function=pyrroline-5-carboxylate reductase activity|0004735||IEA;go_process=L-proline biosynthetic process|0055129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459381.1;locus_tag=C9F05_RS12940;product=pyrroline-5-carboxylate reductase;protein_id=WP_000412193.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	15258	15713	.	+	.	ID=gene-C9F05_RS12945;Name=C9F05_RS12945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12945;old_locus_tag=C9F05_13315
NZ_PYKE01000199.1	Protein Homology	CDS	15258	15713	.	+	0	ID=cds-WP_000158134.1;Parent=gene-C9F05_RS12945;Dbxref=GenBank:WP_000158134.1;Name=WP_000158134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459382.1;locus_tag=C9F05_RS12945;product=YaiI/YqxD family protein;protein_id=WP_000158134.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	15898	16443	.	+	.	ID=gene-C9F05_RS12950;Name=aroL;gbkey=Gene;gene=aroL;gene_biotype=protein_coding;locus_tag=C9F05_RS12950;old_locus_tag=C9F05_13320
NZ_PYKE01000199.1	Protein Homology	CDS	15898	16443	.	+	0	ID=cds-WP_000983569.1;Parent=gene-C9F05_RS12950;Dbxref=GenBank:WP_000983569.1;Name=WP_000983569.1;Ontology_term=GO:0009073,GO:0004765;gbkey=CDS;gene=aroL;go_function=shikimate kinase activity|0004765||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459383.1;locus_tag=C9F05_RS12950;product=shikimate kinase AroL;protein_id=WP_000983569.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	16470	16661	.	+	.	ID=gene-C9F05_RS12955;Name=yaiA;gbkey=Gene;gene=yaiA;gene_biotype=protein_coding;locus_tag=C9F05_RS12955;old_locus_tag=C9F05_13325
NZ_PYKE01000199.1	Protein Homology	CDS	16470	16661	.	+	0	ID=cds-WP_001143161.1;Parent=gene-C9F05_RS12955;Dbxref=GenBank:WP_001143161.1;Name=WP_001143161.1;gbkey=CDS;gene=yaiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459384.1;locus_tag=C9F05_RS12955;product=protein YaiA;protein_id=WP_001143161.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	16912	17589	.	+	.	ID=gene-C9F05_RS12960;Name=C9F05_RS12960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12960;old_locus_tag=C9F05_13330
NZ_PYKE01000199.1	Protein Homology	CDS	16912	17589	.	+	0	ID=cds-WP_001276437.1;Parent=gene-C9F05_RS12960;Dbxref=GenBank:WP_001276437.1;Name=WP_001276437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459385.1;locus_tag=C9F05_RS12960;product=AroM family protein;protein_id=WP_001276437.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	17660	17944	.	+	.	ID=gene-C9F05_RS12965;Name=ppnP;gbkey=Gene;gene=ppnP;gene_biotype=protein_coding;locus_tag=C9F05_RS12965;old_locus_tag=C9F05_13335
NZ_PYKE01000199.1	Protein Homology	CDS	17660	17944	.	+	0	ID=cds-WP_000941953.1;Parent=gene-C9F05_RS12965;Dbxref=GenBank:WP_000941953.1;Name=WP_000941953.1;gbkey=CDS;gene=ppnP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459386.1;locus_tag=C9F05_RS12965;product=pyrimidine/purine nucleoside phosphorylase;protein_id=WP_000941953.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	17987	18898	.	-	.	ID=gene-C9F05_RS12970;Name=rdgC;gbkey=Gene;gene=rdgC;gene_biotype=protein_coding;locus_tag=C9F05_RS12970;old_locus_tag=C9F05_13340
NZ_PYKE01000199.1	Protein Homology	CDS	17987	18898	.	-	0	ID=cds-WP_000964305.1;Parent=gene-C9F05_RS12970;Dbxref=GenBank:WP_000964305.1;Name=WP_000964305.1;Ontology_term=GO:0006310;gbkey=CDS;gene=rdgC;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120935.1;locus_tag=C9F05_RS12970;product=recombination-associated protein RdgC;protein_id=WP_000964305.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	19024	19932	.	+	.	ID=gene-C9F05_RS12975;Name=mak;gbkey=Gene;gene=mak;gene_biotype=protein_coding;locus_tag=C9F05_RS12975;old_locus_tag=C9F05_13345
NZ_PYKE01000199.1	Protein Homology	CDS	19024	19932	.	+	0	ID=cds-WP_135370343.1;Parent=gene-C9F05_RS12975;Dbxref=GenBank:WP_135370343.1;Name=WP_135370343.1;gbkey=CDS;gene=mak;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459388.1;locus_tag=C9F05_RS12975;product=fructokinase;protein_id=WP_135370343.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	19954	21126	.	-	.	ID=gene-C9F05_RS12980;Name=araJ;gbkey=Gene;gene=araJ;gene_biotype=protein_coding;locus_tag=C9F05_RS12980;old_locus_tag=C9F05_13350
NZ_PYKE01000199.1	Protein Homology	CDS	19954	21126	.	-	0	ID=cds-WP_135370344.1;Parent=gene-C9F05_RS12980;Dbxref=GenBank:WP_135370344.1;Name=WP_135370344.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=araJ;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459389.1;locus_tag=C9F05_RS12980;product=MFS transporter AraJ;protein_id=WP_135370344.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	21299	24439	.	-	.	ID=gene-C9F05_RS12985;Name=sbcC;gbkey=Gene;gene=sbcC;gene_biotype=protein_coding;locus_tag=C9F05_RS12985;old_locus_tag=C9F05_13355
NZ_PYKE01000199.1	Protein Homology	CDS	21299	24439	.	-	0	ID=cds-WP_135370345.1;Parent=gene-C9F05_RS12985;Dbxref=GenBank:WP_135370345.1;Name=WP_135370345.1;Ontology_term=GO:0006260,GO:0004527;gbkey=CDS;gene=sbcC;go_function=exonuclease activity|0004527||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459390.1;locus_tag=C9F05_RS12985;product=exonuclease subunit SbcC;protein_id=WP_135370345.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	24436	25638	.	-	.	ID=gene-C9F05_RS12990;Name=sbcD;gbkey=Gene;gene=sbcD;gene_biotype=protein_coding;locus_tag=C9F05_RS12990;old_locus_tag=C9F05_13360
NZ_PYKE01000199.1	Protein Homology	CDS	24436	25638	.	-	0	ID=cds-WP_001221254.1;Parent=gene-C9F05_RS12990;Dbxref=GenBank:WP_001221254.1;Name=WP_001221254.1;Ontology_term=GO:0006260,GO:0006310,GO:0004527;gbkey=CDS;gene=sbcD;go_function=exonuclease activity|0004527||IEA;go_process=DNA replication|0006260||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459391.1;locus_tag=C9F05_RS12990;product=exonuclease subunit SbcD;protein_id=WP_001221254.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	25853	26542	.	+	.	ID=gene-C9F05_RS12995;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=C9F05_RS12995;old_locus_tag=C9F05_13365
NZ_PYKE01000199.1	Protein Homology	CDS	25853	26542	.	+	0	ID=cds-WP_000113921.1;Parent=gene-C9F05_RS12995;Dbxref=GenBank:WP_000113921.1;Name=WP_000113921.1;gbkey=CDS;gene=phoB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000113934.1;locus_tag=C9F05_RS12995;product=phosphate response regulator transcription factor PhoB;protein_id=WP_000113921.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	26612	27907	.	+	.	ID=gene-C9F05_RS13000;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=C9F05_RS13000;old_locus_tag=C9F05_13370
NZ_PYKE01000199.1	Protein Homology	CDS	26612	27907	.	+	0	ID=cds-WP_000893642.1;Parent=gene-C9F05_RS13000;Dbxref=GenBank:WP_000893642.1;Name=WP_000893642.1;Ontology_term=GO:0000160,GO:0006355,GO:0016310,GO:0000155,GO:0004721,GO:0016020;gbkey=CDS;gene=phoR;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,phosphoprotein phosphatase activity|0004721||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459393.1;locus_tag=C9F05_RS13000;product=phosphate regulon sensor histidine kinase PhoR;protein_id=WP_000893642.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	28316	29635	.	+	.	ID=gene-C9F05_RS13005;Name=brnQ;gbkey=Gene;gene=brnQ;gene_biotype=protein_coding;locus_tag=C9F05_RS13005;old_locus_tag=C9F05_13375
NZ_PYKE01000199.1	Protein Homology	CDS	28316	29635	.	+	0	ID=cds-WP_000149625.1;Parent=gene-C9F05_RS13005;Dbxref=GenBank:WP_000149625.1;Name=WP_000149625.1;gbkey=CDS;gene=brnQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459394.1;locus_tag=C9F05_RS13005;product=branched-chain amino acid transporter carrier protein BrnQ;protein_id=WP_000149625.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	29710	31080	.	+	.	ID=gene-C9F05_RS13010;Name=proY;gbkey=Gene;gene=proY;gene_biotype=protein_coding;locus_tag=C9F05_RS13010;old_locus_tag=C9F05_13380
NZ_PYKE01000199.1	Protein Homology	CDS	29710	31080	.	+	0	ID=cds-WP_001537837.1;Parent=gene-C9F05_RS13010;Dbxref=GenBank:WP_001537837.1;Name=WP_001537837.1;Ontology_term=GO:0006865,GO:0055085,GO:0016020;gbkey=CDS;gene=proY;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459395.1;locus_tag=C9F05_RS13010;product=proline-specific permease ProY;protein_id=WP_001537837.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	31242	33059	.	+	.	ID=gene-C9F05_RS13015;Name=malZ;gbkey=Gene;gene=malZ;gene_biotype=protein_coding;locus_tag=C9F05_RS13015;old_locus_tag=C9F05_13385
NZ_PYKE01000199.1	Protein Homology	CDS	31242	33059	.	+	0	ID=cds-WP_135370346.1;Parent=gene-C9F05_RS13015;Dbxref=GenBank:WP_135370346.1;Name=WP_135370346.1;Ontology_term=GO:0005975,GO:0004558;gbkey=CDS;gene=malZ;go_function=alpha-1%2C4-glucosidase activity|0004558||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459396.1;locus_tag=C9F05_RS13015;product=maltodextrin glucosidase;protein_id=WP_135370346.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	33131	33733	.	-	.	ID=gene-C9F05_RS13020;Name=C9F05_RS13020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13020;old_locus_tag=C9F05_13390
NZ_PYKE01000199.1	Protein Homology	CDS	33131	33733	.	-	0	ID=cds-WP_000244731.1;Parent=gene-C9F05_RS13020;Dbxref=GenBank:WP_000244731.1;Name=WP_000244731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459397.1;locus_tag=C9F05_RS13020;product=peroxiredoxin;protein_id=WP_000244731.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	33943	34524	.	-	.	ID=gene-C9F05_RS13025;Name=acpH;gbkey=Gene;gene=acpH;gene_biotype=protein_coding;locus_tag=C9F05_RS13025;old_locus_tag=C9F05_13395
NZ_PYKE01000199.1	Protein Homology	CDS	33943	34524	.	-	0	ID=cds-WP_001009858.1;Parent=gene-C9F05_RS13025;Dbxref=GenBank:WP_001009858.1;Name=WP_001009858.1;Ontology_term=GO:0006633,GO:0008770;gbkey=CDS;gene=acpH;go_function=[acyl-carrier-protein] phosphodiesterase activity|0008770||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459398.1;locus_tag=C9F05_RS13025;product=ACP phosphodiesterase;protein_id=WP_001009858.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	34618	35682	.	+	.	ID=gene-C9F05_RS13030;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=C9F05_RS13030;old_locus_tag=C9F05_13400
NZ_PYKE01000199.1	Protein Homology	CDS	34618	35682	.	+	0	ID=cds-WP_001266530.1;Parent=gene-C9F05_RS13030;Dbxref=GenBank:WP_001266530.1;Name=WP_001266530.1;Ontology_term=GO:0006400,GO:0008616,GO:0051075,GO:0005737;gbkey=CDS;gene=queA;go_component=cytoplasm|0005737||IEA;go_function=S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity|0051075||IEA;go_process=tRNA modification|0006400||IEA,tRNA queuosine(34) biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459399.1;locus_tag=C9F05_RS13030;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=WP_001266530.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	35879	37006	.	+	.	ID=gene-C9F05_RS13035;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=C9F05_RS13035;old_locus_tag=C9F05_13410
NZ_PYKE01000199.1	Protein Homology	CDS	35879	37006	.	+	0	ID=cds-WP_000667305.1;Parent=gene-C9F05_RS13035;Dbxref=GenBank:WP_000667305.1;Name=WP_000667305.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=tRNA-guanosine(34) queuine transglycosylase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904808.1;locus_tag=C9F05_RS13035;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_000667305.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	37029	37361	.	+	.	ID=gene-C9F05_RS13040;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=C9F05_RS13040;old_locus_tag=C9F05_13415
NZ_PYKE01000199.1	Protein Homology	CDS	37029	37361	.	+	0	ID=cds-WP_000007628.1;Parent=gene-C9F05_RS13040;Dbxref=GenBank:WP_000007628.1;Name=WP_000007628.1;Ontology_term=GO:0009306,GO:0015450,GO:0005886;gbkey=CDS;gene=yajC;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000007628.1;locus_tag=C9F05_RS13040;product=preprotein translocase subunit YajC;protein_id=WP_000007628.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	37389	39236	.	+	.	ID=gene-C9F05_RS13045;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=C9F05_RS13045;old_locus_tag=C9F05_13420
NZ_PYKE01000199.1	Protein Homology	CDS	37389	39236	.	+	0	ID=cds-WP_000934811.1;Parent=gene-C9F05_RS13045;Dbxref=GenBank:WP_000934811.1;Name=WP_000934811.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secD;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125127.1;locus_tag=C9F05_RS13045;product=protein translocase subunit SecD;protein_id=WP_000934811.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	39247	40218	.	+	.	ID=gene-C9F05_RS13050;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=C9F05_RS13050;old_locus_tag=C9F05_13425
NZ_PYKE01000199.1	Protein Homology	CDS	39247	40218	.	+	0	ID=cds-WP_000046629.1;Parent=gene-C9F05_RS13050;Dbxref=GenBank:WP_000046629.1;Name=WP_000046629.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secF;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459403.1;locus_tag=C9F05_RS13050;product=protein translocase subunit SecF;protein_id=WP_000046629.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	40363	40728	.	+	.	ID=gene-C9F05_RS13055;Name=C9F05_RS13055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13055;old_locus_tag=C9F05_13430
NZ_PYKE01000199.1	Protein Homology	CDS	40363	40728	.	+	0	ID=cds-WP_000793035.1;Parent=gene-C9F05_RS13055;Dbxref=GenBank:WP_000793035.1;Name=WP_000793035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459404.1;locus_tag=C9F05_RS13055;product=VOC family protein;protein_id=WP_000793035.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	40754	41446	.	+	.	ID=gene-C9F05_RS13060;Name=C9F05_RS13060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13060;old_locus_tag=C9F05_13435
NZ_PYKE01000199.1	Protein Homology	CDS	40754	41446	.	+	0	ID=cds-WP_023182339.1;Parent=gene-C9F05_RS13060;Dbxref=GenBank:WP_023182339.1;Name=WP_023182339.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459405.1;locus_tag=C9F05_RS13060;product=helix-turn-helix transcriptional regulator;protein_id=WP_023182339.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	41616	41963	.	+	.	ID=gene-C9F05_RS13065;Name=yajD;gbkey=Gene;gene=yajD;gene_biotype=protein_coding;locus_tag=C9F05_RS13065;old_locus_tag=C9F05_13440
NZ_PYKE01000199.1	Protein Homology	CDS	41616	41963	.	+	0	ID=cds-WP_000974818.1;Parent=gene-C9F05_RS13065;Dbxref=GenBank:WP_000974818.1;Name=WP_000974818.1;gbkey=CDS;gene=yajD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459406.1;locus_tag=C9F05_RS13065;product=HNH nuclease YajD;protein_id=WP_000974818.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	42401	42508	.	+	.	ID=gene-C9F05_RS13075;Name=C9F05_RS13075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13075
NZ_PYKE01000199.1	Protein Homology	CDS	42401	42508	.	+	0	ID=cds-WP_000176312.1;Parent=gene-C9F05_RS13075;Dbxref=GenBank:WP_000176312.1;Name=WP_000176312.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000176312.1;locus_tag=C9F05_RS13075;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_000176312.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	42592	43455	.	-	.	ID=gene-C9F05_RS13080;Name=C9F05_RS13080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13080;old_locus_tag=C9F05_13455
NZ_PYKE01000199.1	Protein Homology	CDS	42592	43455	.	-	0	ID=cds-WP_135370347.1;Parent=gene-C9F05_RS13080;Dbxref=GenBank:WP_135370347.1;Name=WP_135370347.1;Ontology_term=GO:0015858,GO:0015471,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=nucleoside-specific channel forming porin activity|0015471||IEA;go_process=nucleoside transport|0015858||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459408.1;locus_tag=C9F05_RS13080;product=nucleoside-specific channel-forming protein Tsx;protein_id=WP_135370347.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	43755	44294	.	-	.	ID=gene-C9F05_RS13085;Name=C9F05_RS13085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13085;old_locus_tag=C9F05_13460
NZ_PYKE01000199.1	Protein Homology	CDS	43755	44294	.	-	0	ID=cds-WP_135370348.1;Parent=gene-C9F05_RS13085;Dbxref=GenBank:WP_135370348.1;Name=WP_135370348.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459409.1;locus_tag=C9F05_RS13085;product=DUF3251 domain-containing protein;protein_id=WP_135370348.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	44446	44895	.	+	.	ID=gene-C9F05_RS13090;Name=nrdR;gbkey=Gene;gene=nrdR;gene_biotype=protein_coding;locus_tag=C9F05_RS13090;old_locus_tag=C9F05_13465
NZ_PYKE01000199.1	Protein Homology	CDS	44446	44895	.	+	0	ID=cds-WP_000543533.1;Parent=gene-C9F05_RS13090;Dbxref=GenBank:WP_000543533.1;Name=WP_000543533.1;Ontology_term=GO:0006355,GO:0008270,GO:0140110;gbkey=CDS;gene=nrdR;go_function=zinc ion binding|0008270||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017458860.1;locus_tag=C9F05_RS13090;product=transcriptional regulator NrdR;protein_id=WP_000543533.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	44899	46002	.	+	.	ID=gene-C9F05_RS13095;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=C9F05_RS13095;old_locus_tag=C9F05_13470
NZ_PYKE01000199.1	Protein Homology	CDS	44899	46002	.	+	0	ID=cds-WP_001150216.1;Parent=gene-C9F05_RS13095;Dbxref=GenBank:WP_001150216.1;Name=WP_001150216.1;Ontology_term=GO:0008270,GO:0008703,GO:0008835,GO:0050661;gbkey=CDS;gene=ribD;go_function=zinc ion binding|0008270||IEA,5-amino-6-(5-phosphoribosylamino)uracil reductase activity|0008703||IEA,diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|0008835||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459411.1;locus_tag=C9F05_RS13095;product=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD;protein_id=WP_001150216.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	46091	46561	.	+	.	ID=gene-C9F05_RS13100;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=C9F05_RS13100;old_locus_tag=C9F05_13475
NZ_PYKE01000199.1	Protein Homology	CDS	46091	46561	.	+	0	ID=cds-WP_001021372.1;Parent=gene-C9F05_RS13100;Dbxref=GenBank:WP_001021372.1;Name=WP_001021372.1;Ontology_term=GO:0000906,GO:0009349;gbkey=CDS;gene=ribH;go_component=riboflavin synthase complex|0009349||IEA;go_function=6%2C7-dimethyl-8-ribityllumazine synthase activity|0000906||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818760.1;locus_tag=C9F05_RS13100;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_001021372.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	46582	47001	.	+	.	ID=gene-C9F05_RS13105;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=C9F05_RS13105;old_locus_tag=C9F05_13480
NZ_PYKE01000199.1	Protein Homology	CDS	46582	47001	.	+	0	ID=cds-WP_000801129.1;Parent=gene-C9F05_RS13105;Dbxref=GenBank:WP_000801129.1;Name=WP_000801129.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusB;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459413.1;locus_tag=C9F05_RS13105;product=transcription antitermination factor NusB;protein_id=WP_000801129.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	47083	48063	.	+	.	ID=gene-C9F05_RS13110;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=C9F05_RS13110;old_locus_tag=C9F05_13485
NZ_PYKE01000199.1	Protein Homology	CDS	47083	48063	.	+	0	ID=cds-WP_000752133.1;Parent=gene-C9F05_RS13110;Dbxref=GenBank:WP_000752133.1;Name=WP_000752133.1;Ontology_term=GO:0009228,GO:0009030;gbkey=CDS;gene=thiL;go_function=thiamine-phosphate kinase activity|0009030||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308497.1;locus_tag=C9F05_RS13110;product=thiamine-phosphate kinase;protein_id=WP_000752133.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	48041	48556	.	+	.	ID=gene-C9F05_RS13115;Name=pgpA;gbkey=Gene;gene=pgpA;gene_biotype=protein_coding;locus_tag=C9F05_RS13115;old_locus_tag=C9F05_13490
NZ_PYKE01000199.1	Protein Homology	CDS	48041	48556	.	+	0	ID=cds-WP_000154063.1;Parent=gene-C9F05_RS13115;Dbxref=GenBank:WP_000154063.1;Name=WP_000154063.1;Ontology_term=GO:0006629,GO:0008962;gbkey=CDS;gene=pgpA;go_function=phosphatidylglycerophosphatase activity|0008962||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459415.1;locus_tag=C9F05_RS13115;product=phosphatidylglycerophosphatase A;protein_id=WP_000154063.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	pseudogene	48561	48652	.	-	.	ID=gene-C9F05_RS24160;Name=C9F05_RS24160;end_range=48652,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24160;partial=true;pseudo=true;start_range=.,48561
NZ_PYKE01000199.1	Protein Homology	CDS	48561	48652	.	-	0	ID=cds-C9F05_RS24160;Parent=gene-C9F05_RS24160;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=48652,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=C9F05_RS24160;partial=true;product=hypothetical protein;pseudo=true;start_range=.,48561;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	48660	49634	.	-	.	ID=gene-C9F05_RS13120;Name=C9F05_RS13120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13120;old_locus_tag=C9F05_13495
NZ_PYKE01000199.1	Protein Homology	CDS	48660	49634	.	-	0	ID=cds-WP_001199870.1;Parent=gene-C9F05_RS13120;Dbxref=GenBank:WP_001199870.1;Name=WP_001199870.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459416.1;locus_tag=C9F05_RS13120;product=aldo/keto reductase;protein_id=WP_001199870.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	49691	51553	.	-	.	ID=gene-C9F05_RS13125;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=C9F05_RS13125;old_locus_tag=C9F05_13500
NZ_PYKE01000199.1	Protein Homology	CDS	49691	51553	.	-	0	ID=cds-WP_000006777.1;Parent=gene-C9F05_RS13125;Dbxref=GenBank:WP_000006777.1;Name=WP_000006777.1;Ontology_term=GO:0008615,GO:0009228,GO:0009240,GO:0008661,GO:0005737;gbkey=CDS;gene=dxs;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate synthase activity|0008661||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA,thiamine biosynthetic process|0009228||IEA,isopentenyl diphosphate biosynthetic process|0009240||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459417.1;locus_tag=C9F05_RS13125;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_000006777.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	51577	52476	.	-	.	ID=gene-C9F05_RS13130;Name=ispA;gbkey=Gene;gene=ispA;gene_biotype=protein_coding;locus_tag=C9F05_RS13130;old_locus_tag=C9F05_13505
NZ_PYKE01000199.1	Protein Homology	CDS	51577	52476	.	-	0	ID=cds-WP_000348074.1;Parent=gene-C9F05_RS13130;Dbxref=GenBank:WP_000348074.1;Name=WP_000348074.1;Ontology_term=GO:0008299;gbkey=CDS;gene=ispA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459418.1;locus_tag=C9F05_RS13130;product=(2E%2C6E)-farnesyl diphosphate synthase;protein_id=WP_000348074.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	52477	52719	.	-	.	ID=gene-C9F05_RS13135;Name=xseB;gbkey=Gene;gene=xseB;gene_biotype=protein_coding;locus_tag=C9F05_RS13135;old_locus_tag=C9F05_13510
NZ_PYKE01000199.1	Protein Homology	CDS	52477	52719	.	-	0	ID=cds-WP_001124944.1;Parent=gene-C9F05_RS13135;Dbxref=GenBank:WP_001124944.1;Name=WP_001124944.1;gbkey=CDS;gene=xseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459419.1;locus_tag=C9F05_RS13135;product=exodeoxyribonuclease VII small subunit;protein_id=WP_001124944.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	52929	54377	.	+	.	ID=gene-C9F05_RS13140;Name=thiI;gbkey=Gene;gene=thiI;gene_biotype=protein_coding;locus_tag=C9F05_RS13140;old_locus_tag=C9F05_13515
NZ_PYKE01000199.1	Protein Homology	CDS	52929	54377	.	+	0	ID=cds-WP_000668648.1;Parent=gene-C9F05_RS13140;Dbxref=GenBank:WP_000668648.1;Name=WP_000668648.1;Ontology_term=GO:0006400,GO:0009228,GO:0140741;gbkey=CDS;gene=thiI;go_function=tRNA-uracil-4 sulfurtransferase activity|0140741||IEA;go_process=tRNA modification|0006400||IEA,thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014168857.1;locus_tag=C9F05_RS13140;product=tRNA uracil 4-sulfurtransferase ThiI;protein_id=WP_000668648.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	54421	55218	.	-	.	ID=gene-C9F05_RS13145;Name=phnV;gbkey=Gene;gene=phnV;gene_biotype=protein_coding;locus_tag=C9F05_RS13145;old_locus_tag=C9F05_13520
NZ_PYKE01000199.1	Protein Homology	CDS	54421	55218	.	-	0	ID=cds-WP_000909792.1;Parent=gene-C9F05_RS13145;Dbxref=GenBank:WP_000909792.1;Name=WP_000909792.1;Ontology_term=GO:0033223,GO:0033225,GO:0016020;gbkey=CDS;gene=phnV;go_component=membrane|0016020||IEA;go_function=ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459421.1;locus_tag=C9F05_RS13145;product=2-aminoethylphosphonate ABC transport system%2C membrane component PhnV;protein_id=WP_000909792.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	55221	56081	.	-	.	ID=gene-C9F05_RS13150;Name=phnU;gbkey=Gene;gene=phnU;gene_biotype=protein_coding;locus_tag=C9F05_RS13150;old_locus_tag=C9F05_13525
NZ_PYKE01000199.1	Protein Homology	CDS	55221	56081	.	-	0	ID=cds-WP_135370349.1;Parent=gene-C9F05_RS13150;Dbxref=GenBank:WP_135370349.1;Name=WP_135370349.1;Ontology_term=GO:0033223,GO:0033225,GO:0016020;gbkey=CDS;gene=phnU;go_component=membrane|0016020||IEA;go_function=ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459422.1;locus_tag=C9F05_RS13150;product=2-aminoethylphosphonate ABC transporter permease subunit;protein_id=WP_135370349.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	56084	57193	.	-	.	ID=gene-C9F05_RS13155;Name=phnT;gbkey=Gene;gene=phnT;gene_biotype=protein_coding;locus_tag=C9F05_RS13155;old_locus_tag=C9F05_13530
NZ_PYKE01000199.1	Protein Homology	CDS	56084	57193	.	-	0	ID=cds-WP_000928787.1;Parent=gene-C9F05_RS13155;Dbxref=GenBank:WP_000928787.1;Name=WP_000928787.1;Ontology_term=GO:0033223,GO:0005524,GO:0033225,GO:0009898,GO:0055052;gbkey=CDS;gene=phnT;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459423.1;locus_tag=C9F05_RS13155;product=2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT;protein_id=WP_000928787.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	57199	58212	.	-	.	ID=gene-C9F05_RS13160;Name=phnS;gbkey=Gene;gene=phnS;gene_biotype=protein_coding;locus_tag=C9F05_RS13160;old_locus_tag=C9F05_13535
NZ_PYKE01000199.1	Protein Homology	CDS	57199	58212	.	-	0	ID=cds-WP_000778008.1;Parent=gene-C9F05_RS13160;Dbxref=GenBank:WP_000778008.1;Name=WP_000778008.1;Ontology_term=GO:0033223,GO:0033225,GO:0033226,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=phnS;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA,2-aminoethylphosphonate binding|0033226||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459424.1;locus_tag=C9F05_RS13160;product=2-aminoethylphosphonate ABC transporter substrate-binding protein;protein_id=WP_000778008.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	58410	59129	.	-	.	ID=gene-C9F05_RS13165;Name=phnR;gbkey=Gene;gene=phnR;gene_biotype=protein_coding;locus_tag=C9F05_RS13165;old_locus_tag=C9F05_13540
NZ_PYKE01000199.1	Protein Homology	CDS	58410	59129	.	-	0	ID=cds-WP_000836268.1;Parent=gene-C9F05_RS13165;Dbxref=GenBank:WP_000836268.1;Name=WP_000836268.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=phnR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459425.1;locus_tag=C9F05_RS13165;product=phosphonate utilization transcriptional regulator PhnR;protein_id=WP_000836268.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	59269	60372	.	+	.	ID=gene-C9F05_RS13170;Name=phnW;gbkey=Gene;gene=phnW;gene_biotype=protein_coding;locus_tag=C9F05_RS13170;old_locus_tag=C9F05_13545
NZ_PYKE01000199.1	Protein Homology	CDS	59269	60372	.	+	0	ID=cds-WP_000203971.1;Parent=gene-C9F05_RS13170;Dbxref=GenBank:WP_000203971.1;Name=WP_000203971.1;Ontology_term=GO:0019700,GO:0047304;gbkey=CDS;gene=phnW;go_function=2-aminoethylphosphonate-pyruvate transaminase activity|0047304||IEA;go_process=organic phosphonate catabolic process|0019700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459426.1;locus_tag=C9F05_RS13170;product=2-aminoethylphosphonate--pyruvate transaminase;protein_id=WP_000203971.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	60382	61191	.	+	.	ID=gene-C9F05_RS13175;Name=phnX;gbkey=Gene;gene=phnX;gene_biotype=protein_coding;locus_tag=C9F05_RS13175;old_locus_tag=C9F05_13550
NZ_PYKE01000199.1	Protein Homology	CDS	60382	61191	.	+	0	ID=cds-WP_001526311.1;Parent=gene-C9F05_RS13175;Dbxref=GenBank:WP_001526311.1;Name=WP_001526311.1;Ontology_term=GO:0019700,GO:0050194;gbkey=CDS;gene=phnX;go_function=phosphonoacetaldehyde hydrolase activity|0050194||IEA;go_process=organic phosphonate catabolic process|0019700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229535.1;locus_tag=C9F05_RS13175;product=phosphonoacetaldehyde hydrolase;protein_id=WP_001526311.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	pseudogene	61197	61279	.	+	.	ID=gene-C9F05_RS24165;Name=C9F05_RS24165;end_range=61279,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24165;partial=true;pseudo=true;start_range=.,61197
NZ_PYKE01000199.1	Protein Homology	CDS	61197	61279	.	+	0	ID=cds-C9F05_RS24165;Parent=gene-C9F05_RS24165;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=61279,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=C9F05_RS24165;partial=true;product=hypothetical protein;pseudo=true;start_range=.,61197;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	61288	61878	.	-	.	ID=gene-C9F05_RS13180;Name=yajL;gbkey=Gene;gene=yajL;gene_biotype=protein_coding;locus_tag=C9F05_RS13180;old_locus_tag=C9F05_13555
NZ_PYKE01000199.1	Protein Homology	CDS	61288	61878	.	-	0	ID=cds-WP_001275807.1;Parent=gene-C9F05_RS13180;Dbxref=GenBank:WP_001275807.1;Name=WP_001275807.1;gbkey=CDS;gene=yajL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459428.1;locus_tag=C9F05_RS13180;product=protein deglycase YajL;protein_id=WP_001275807.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	61841	62752	.	-	.	ID=gene-C9F05_RS13185;Name=panE;gbkey=Gene;gene=panE;gene_biotype=protein_coding;locus_tag=C9F05_RS13185;old_locus_tag=C9F05_13560
NZ_PYKE01000199.1	Protein Homology	CDS	61841	62752	.	-	0	ID=cds-WP_000705816.1;Parent=gene-C9F05_RS13185;Dbxref=GenBank:WP_000705816.1;Name=WP_000705816.1;Ontology_term=GO:0015940,GO:0008677;gbkey=CDS;gene=panE;go_function=2-dehydropantoate 2-reductase activity|0008677||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459429.1;locus_tag=C9F05_RS13185;product=2-dehydropantoate 2-reductase;protein_id=WP_000705816.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	62878	63369	.	+	.	ID=gene-C9F05_RS13190;Name=C9F05_RS13190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13190;old_locus_tag=C9F05_13565
NZ_PYKE01000199.1	Protein Homology	CDS	62878	63369	.	+	0	ID=cds-WP_001138913.1;Parent=gene-C9F05_RS13190;Dbxref=GenBank:WP_001138913.1;Name=WP_001138913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965590.1;locus_tag=C9F05_RS13190;product=YajQ family cyclic di-GMP-binding protein;protein_id=WP_001138913.1;transl_table=11
NZ_PYKE01000199.1	RefSeq	gene	63416	64780	.	-	.	ID=gene-C9F05_RS13195;Name=C9F05_RS13195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13195;old_locus_tag=C9F05_13570
NZ_PYKE01000199.1	Protein Homology	CDS	63416	64780	.	-	0	ID=cds-WP_001000938.1;Parent=gene-C9F05_RS13195;Dbxref=GenBank:WP_001000938.1;Name=WP_001000938.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016507029.1;locus_tag=C9F05_RS13195;product=MFS transporter;protein_id=WP_001000938.1;transl_table=11
##sequence-region NZ_PYKE01000259.1 1 1953
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000259.1	RefSeq	region	1	1953	.	+	.	ID=NZ_PYKE01000259.1:1..1953;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000259.1	RefSeq	gene	86	523	.	-	.	ID=gene-C9F05_RS16890;Name=C9F05_RS16890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16890;old_locus_tag=C9F05_17385
NZ_PYKE01000259.1	Protein Homology	CDS	86	523	.	-	0	ID=cds-WP_220703807.1;Parent=gene-C9F05_RS16890;Dbxref=GenBank:WP_220703807.1;Name=WP_220703807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463177.1;locus_tag=C9F05_RS16890;product=Ig-like domain-containing protein;protein_id=WP_220703807.1;transl_table=11
NZ_PYKE01000259.1	RefSeq	gene	459	767	.	+	.	ID=gene-C9F05_RS16900;Name=C9F05_RS16900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16900;old_locus_tag=C9F05_17395
NZ_PYKE01000259.1	Protein Homology	CDS	459	767	.	+	0	ID=cds-WP_139775665.1;Parent=gene-C9F05_RS16900;Dbxref=GenBank:WP_139775665.1;Name=WP_139775665.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001576549.1;locus_tag=C9F05_RS16900;product=ATP-binding cassette domain-containing protein;protein_id=WP_139775665.1;transl_table=11
NZ_PYKE01000259.1	RefSeq	gene	760	1047	.	-	.	ID=gene-C9F05_RS16905;Name=rtsB;gbkey=Gene;gene=rtsB;gene_biotype=protein_coding;locus_tag=C9F05_RS16905;old_locus_tag=C9F05_17400
NZ_PYKE01000259.1	Protein Homology	CDS	760	1047	.	-	0	ID=cds-WP_001541332.1;Parent=gene-C9F05_RS16905;Dbxref=GenBank:WP_001541332.1;Name=WP_001541332.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rtsB;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463179.3;locus_tag=C9F05_RS16905;product=transcriptional regulator RtsB;protein_id=WP_001541332.1;transl_table=11
NZ_PYKE01000259.1	RefSeq	gene	1044	1919	.	-	.	ID=gene-C9F05_RS16910;Name=C9F05_RS16910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16910;old_locus_tag=C9F05_17405
NZ_PYKE01000259.1	Protein Homology	CDS	1044	1919	.	-	0	ID=cds-WP_000921674.1;Parent=gene-C9F05_RS16910;Dbxref=GenBank:WP_000921674.1;Name=WP_000921674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463180.1;locus_tag=C9F05_RS16910;product=AraC family transcriptional regulator;protein_id=WP_000921674.1;transl_table=11
##sequence-region NZ_PYKE01000009.1 1 1947
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000009.1	RefSeq	region	1	1947	.	+	.	ID=NZ_PYKE01000009.1:1..1947;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000009.1	RefSeq	pseudogene	56	640	.	-	.	ID=gene-C9F05_RS00465;Name=C9F05_RS00465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS00465;old_locus_tag=C9F05_00480;partial=true;pseudo=true;start_range=.,56
NZ_PYKE01000009.1	Protein Homology	CDS	56	640	.	-	0	ID=cds-C9F05_RS00465;Parent=gene-C9F05_RS00465;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460529.1;locus_tag=C9F05_RS00465;partial=true;product=molybdopterin-dependent oxidoreductase;pseudo=true;start_range=.,56;transl_table=11
NZ_PYKE01000009.1	RefSeq	gene	918	1799	.	+	.	ID=gene-C9F05_RS00470;Name=yddG;gbkey=Gene;gene=yddG;gene_biotype=protein_coding;locus_tag=C9F05_RS00470;old_locus_tag=C9F05_00485
NZ_PYKE01000009.1	Protein Homology	CDS	918	1799	.	+	0	ID=cds-WP_038393853.1;Parent=gene-C9F05_RS00470;Dbxref=GenBank:WP_038393853.1;Name=WP_038393853.1;gbkey=CDS;gene=yddG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000203799.1;locus_tag=C9F05_RS00470;product=aromatic amino acid efflux DMT transporter YddG;protein_id=WP_038393853.1;transl_table=11
##sequence-region NZ_PYKE01000204.1 1 1855
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000204.1	RefSeq	region	1	1855	.	+	.	ID=NZ_PYKE01000204.1:1..1855;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000204.1	RefSeq	gene	212	1855	.	-	.	ID=gene-C9F05_RS13365;Name=C9F05_RS13365;end_range=1855,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13365;old_locus_tag=C9F05_13750;partial=true
NZ_PYKE01000204.1	Protein Homology	CDS	212	1855	.	-	0	ID=cds-WP_135370356.1;Parent=gene-C9F05_RS13365;Dbxref=GenBank:WP_135370356.1;Name=WP_135370356.1;end_range=1855,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000049444.1;locus_tag=C9F05_RS13365;partial=true;product=hypothetical protein;protein_id=WP_135370356.1;transl_table=11
##sequence-region NZ_PYKE01000137.1 1 1779
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000137.1	RefSeq	region	1	1779	.	+	.	ID=NZ_PYKE01000137.1:1..1779;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000137.1	RefSeq	gene	26	550	.	+	.	ID=gene-C9F05_RS10110;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=C9F05_RS10110;old_locus_tag=C9F05_10365
NZ_PYKE01000137.1	Protein Homology	CDS	26	550	.	+	0	ID=cds-WP_001176621.1;Parent=gene-C9F05_RS10110;Dbxref=GenBank:WP_001176621.1;Name=WP_001176621.1;gbkey=CDS;gene=pal;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459734.1;locus_tag=C9F05_RS10110;product=peptidoglycan-associated lipoprotein Pal;protein_id=WP_001176621.1;transl_table=11
NZ_PYKE01000137.1	RefSeq	gene	560	1348	.	+	.	ID=gene-C9F05_RS10115;Name=cpoB;gbkey=Gene;gene=cpoB;gene_biotype=protein_coding;locus_tag=C9F05_RS10115;old_locus_tag=C9F05_10370
NZ_PYKE01000137.1	Protein Homology	CDS	560	1348	.	+	0	ID=cds-WP_000097552.1;Parent=gene-C9F05_RS10115;Dbxref=GenBank:WP_000097552.1;Name=WP_000097552.1;Ontology_term=GO:0051301,GO:0070206,GO:0005515;gbkey=CDS;gene=cpoB;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA,protein trimerization|0070206||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459735.1;locus_tag=C9F05_RS10115;product=cell division protein CpoB;protein_id=WP_000097552.1;transl_table=11
NZ_PYKE01000137.1	RefSeq	gene	1513	1588	.	+	.	ID=gene-C9F05_RS10120;Name=C9F05_RS10120;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS10120;old_locus_tag=C9F05_10375
NZ_PYKE01000137.1	tRNAscan-SE	tRNA	1513	1588	.	+	.	ID=rna-C9F05_RS10120;Parent=gene-C9F05_RS10120;anticodon=(pos:1546..1548);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS10120;product=tRNA-Lys
NZ_PYKE01000137.1	tRNAscan-SE	exon	1513	1588	.	+	.	ID=exon-C9F05_RS10120-1;Parent=rna-C9F05_RS10120;anticodon=(pos:1546..1548);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS10120;product=tRNA-Lys
##sequence-region NZ_PYKE01000092.1 1 23649
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000092.1	RefSeq	region	1	23649	.	+	.	ID=NZ_PYKE01000092.1:1..23649;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000092.1	RefSeq	gene	171	1664	.	+	.	ID=gene-C9F05_RS06485;Name=C9F05_RS06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06485;old_locus_tag=C9F05_06620
NZ_PYKE01000092.1	Protein Homology	CDS	171	1664	.	+	0	ID=cds-WP_000831886.1;Parent=gene-C9F05_RS06485;Dbxref=GenBank:WP_000831886.1;Name=WP_000831886.1;Ontology_term=GO:0008484,GO:0046872;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459040.1;locus_tag=C9F05_RS06485;product=sulfatase family protein;protein_id=WP_000831886.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	1763	2953	.	+	.	ID=gene-C9F05_RS06490;Name=C9F05_RS06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06490;old_locus_tag=C9F05_06625
NZ_PYKE01000092.1	Protein Homology	CDS	1763	2953	.	+	0	ID=cds-WP_000971148.1;Parent=gene-C9F05_RS06490;Dbxref=GenBank:WP_000971148.1;Name=WP_000971148.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459041.1;locus_tag=C9F05_RS06490;product=anaerobic sulfatase maturase;protein_id=WP_000971148.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	2972	4234	.	+	.	ID=gene-C9F05_RS06495;Name=C9F05_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06495;old_locus_tag=C9F05_06630
NZ_PYKE01000092.1	Protein Homology	CDS	2972	4234	.	+	0	ID=cds-WP_135370124.1;Parent=gene-C9F05_RS06495;Dbxref=GenBank:WP_135370124.1;Name=WP_135370124.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001055825.1;locus_tag=C9F05_RS06495;product=IS1/IS1595 family N-terminal zinc-binding domain-containing protein;protein_id=WP_135370124.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	4352	6067	.	+	.	ID=gene-C9F05_RS06500;Name=C9F05_RS06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06500;old_locus_tag=C9F05_06635
NZ_PYKE01000092.1	Protein Homology	CDS	4352	6067	.	+	0	ID=cds-WP_135370125.1;Parent=gene-C9F05_RS06500;Dbxref=GenBank:WP_135370125.1;Name=WP_135370125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459043.1;locus_tag=C9F05_RS06500;product=aryl-sulfate sulfotransferase;protein_id=WP_135370125.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	6230	7396	.	+	.	ID=gene-C9F05_RS06505;Name=nhaA;gbkey=Gene;gene=nhaA;gene_biotype=protein_coding;locus_tag=C9F05_RS06505;old_locus_tag=C9F05_06640
NZ_PYKE01000092.1	Protein Homology	CDS	6230	7396	.	+	0	ID=cds-WP_048591304.1;Parent=gene-C9F05_RS06505;Dbxref=GenBank:WP_048591304.1;Name=WP_048591304.1;Ontology_term=GO:0006814,GO:0006885,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaA;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459044.1;locus_tag=C9F05_RS06505;product=Na+/H+ antiporter NhaA;protein_id=WP_048591304.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	7458	8357	.	+	.	ID=gene-C9F05_RS06510;Name=nhaR;gbkey=Gene;gene=nhaR;gene_biotype=protein_coding;locus_tag=C9F05_RS06510;old_locus_tag=C9F05_06645
NZ_PYKE01000092.1	Protein Homology	CDS	7458	8357	.	+	0	ID=cds-WP_000062872.1;Parent=gene-C9F05_RS06510;Dbxref=GenBank:WP_000062872.1;Name=WP_000062872.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=nhaR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459045.1;locus_tag=C9F05_RS06510;product=transcriptional activator NhaR;protein_id=WP_000062872.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	8412	10451	.	-	.	ID=gene-C9F05_RS06515;Name=C9F05_RS06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06515;old_locus_tag=C9F05_06650
NZ_PYKE01000092.1	Protein Homology	CDS	8412	10451	.	-	0	ID=cds-WP_001647565.1;Parent=gene-C9F05_RS06515;Dbxref=GenBank:WP_001647565.1;Name=WP_001647565.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459046.1;locus_tag=C9F05_RS06515;product=glycoside hydrolase family 31 protein;protein_id=WP_001647565.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	10491	11864	.	-	.	ID=gene-C9F05_RS06520;Name=C9F05_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06520;old_locus_tag=C9F05_06655
NZ_PYKE01000092.1	Protein Homology	CDS	10491	11864	.	-	0	ID=cds-WP_000099989.1;Parent=gene-C9F05_RS06520;Dbxref=GenBank:WP_000099989.1;Name=WP_000099989.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459047.1;locus_tag=C9F05_RS06520;product=MFS transporter;protein_id=WP_000099989.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	12320	12583	.	-	.	ID=gene-C9F05_RS06525;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=C9F05_RS06525;old_locus_tag=C9F05_06660
NZ_PYKE01000092.1	Protein Homology	CDS	12320	12583	.	-	0	ID=cds-WP_001518655.1;Parent=gene-C9F05_RS06525;Dbxref=GenBank:WP_001518655.1;Name=WP_001518655.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsT;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006117633.1;locus_tag=C9F05_RS06525;product=30S ribosomal protein S20;protein_id=WP_001518655.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	12689	12904	.	+	.	ID=gene-C9F05_RS06530;Name=C9F05_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06530;old_locus_tag=C9F05_06665
NZ_PYKE01000092.1	Protein Homology	CDS	12689	12904	.	+	0	ID=cds-WP_001726890.1;Parent=gene-C9F05_RS06530;Dbxref=GenBank:WP_001726890.1;Name=WP_001726890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459049.1;locus_tag=C9F05_RS06530;product=DUF2575 family protein;protein_id=WP_001726890.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	12912	13850	.	+	.	ID=gene-C9F05_RS06535;Name=ribF;gbkey=Gene;gene=ribF;gene_biotype=protein_coding;locus_tag=C9F05_RS06535;old_locus_tag=C9F05_06670
NZ_PYKE01000092.1	Protein Homology	CDS	12912	13850	.	+	0	ID=cds-WP_000767311.1;Parent=gene-C9F05_RS06535;Dbxref=GenBank:WP_000767311.1;Name=WP_000767311.1;Ontology_term=GO:0003919;gbkey=CDS;gene=ribF;go_function=FMN adenylyltransferase activity|0003919||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459050.1;locus_tag=C9F05_RS06535;product=bifunctional riboflavin kinase/FAD synthetase;protein_id=WP_000767311.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	13895	16729	.	+	.	ID=gene-C9F05_RS06540;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=C9F05_RS06540;old_locus_tag=C9F05_06675
NZ_PYKE01000092.1	Protein Homology	CDS	13895	16729	.	+	0	ID=cds-WP_001674865.1;Parent=gene-C9F05_RS06540;Dbxref=GenBank:WP_001674865.1;Name=WP_001674865.1;Ontology_term=GO:0006428,GO:0000166,GO:0004822,GO:0005524;gbkey=CDS;gene=ileS;go_function=nucleotide binding|0000166||IEA,isoleucine-tRNA ligase activity|0004822||IEA,ATP binding|0005524||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459051.1;locus_tag=C9F05_RS06540;product=isoleucine--tRNA ligase;protein_id=WP_001674865.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	16729	17229	.	+	.	ID=gene-C9F05_RS06545;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=C9F05_RS06545;old_locus_tag=C9F05_06680
NZ_PYKE01000092.1	Protein Homology	CDS	16729	17229	.	+	0	ID=cds-WP_000042739.1;Parent=gene-C9F05_RS06545;Dbxref=GenBank:WP_000042739.1;Name=WP_000042739.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005886;gbkey=CDS;gene=lspA;go_component=plasma membrane|0005886||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459052.1;locus_tag=C9F05_RS06545;product=signal peptidase II;protein_id=WP_000042739.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	17384	17833	.	+	.	ID=gene-C9F05_RS06550;Name=fkpB;gbkey=Gene;gene=fkpB;gene_biotype=protein_coding;locus_tag=C9F05_RS06550;old_locus_tag=C9F05_06685
NZ_PYKE01000092.1	Protein Homology	CDS	17384	17833	.	+	0	ID=cds-WP_000047269.1;Parent=gene-C9F05_RS06550;Dbxref=GenBank:WP_000047269.1;Name=WP_000047269.1;Ontology_term=GO:0003755;gbkey=CDS;gene=fkpB;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459053.1;locus_tag=C9F05_RS06550;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000047269.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	17836	18786	.	+	.	ID=gene-C9F05_RS06555;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=C9F05_RS06555;old_locus_tag=C9F05_06690
NZ_PYKE01000092.1	Protein Homology	CDS	17836	18786	.	+	0	ID=cds-WP_001166428.1;Parent=gene-C9F05_RS06555;Dbxref=GenBank:WP_001166428.1;Name=WP_001166428.1;Ontology_term=GO:0019288,GO:0050992,GO:0046872,GO:0051745;gbkey=CDS;gene=ispH;go_function=metal ion binding|0046872||IEA,4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity|0051745||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA,dimethylallyl diphosphate biosynthetic process|0050992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124087.1;locus_tag=C9F05_RS06555;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_001166428.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	18986	20188	.	+	.	ID=gene-C9F05_RS06560;Name=C9F05_RS06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06560;old_locus_tag=C9F05_06695
NZ_PYKE01000092.1	Protein Homology	CDS	18986	20188	.	+	0	ID=cds-WP_135370126.1;Parent=gene-C9F05_RS06560;Dbxref=GenBank:WP_135370126.1;Name=WP_135370126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459055.1;locus_tag=C9F05_RS06560;product=XAC2610-related protein;protein_id=WP_135370126.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	20204	21124	.	+	.	ID=gene-C9F05_RS06565;Name=rihC;gbkey=Gene;gene=rihC;gene_biotype=protein_coding;locus_tag=C9F05_RS06565;old_locus_tag=C9F05_06700
NZ_PYKE01000092.1	Protein Homology	CDS	20204	21124	.	+	0	ID=cds-WP_135370127.1;Parent=gene-C9F05_RS06565;Dbxref=GenBank:WP_135370127.1;Name=WP_135370127.1;Ontology_term=GO:0016799;gbkey=CDS;gene=rihC;go_function=hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459056.1;locus_tag=C9F05_RS06565;product=ribonucleoside hydrolase RihC;protein_id=WP_135370127.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	21146	21832	.	-	.	ID=gene-C9F05_RS06570;Name=citB;gbkey=Gene;gene=citB;gene_biotype=protein_coding;locus_tag=C9F05_RS06570;old_locus_tag=C9F05_06705
NZ_PYKE01000092.1	Protein Homology	CDS	21146	21832	.	-	0	ID=cds-WP_000377406.1;Parent=gene-C9F05_RS06570;Dbxref=GenBank:WP_000377406.1;Name=WP_000377406.1;gbkey=CDS;gene=citB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459057.1;locus_tag=C9F05_RS06570;product=citrate response regulator transcription factor CitB;protein_id=WP_000377406.1;transl_table=11
NZ_PYKE01000092.1	RefSeq	gene	21834	23453	.	-	.	ID=gene-C9F05_RS06575;Name=citA;gbkey=Gene;gene=citA;gene_biotype=protein_coding;locus_tag=C9F05_RS06575;old_locus_tag=C9F05_06710
NZ_PYKE01000092.1	Protein Homology	CDS	21834	23453	.	-	0	ID=cds-WP_023216942.1;Parent=gene-C9F05_RS06575;Dbxref=GenBank:WP_023216942.1;Name=WP_023216942.1;gbkey=CDS;gene=citA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459058.1;locus_tag=C9F05_RS06575;product=citrate sensor histidine kinase CitA;protein_id=WP_023216942.1;transl_table=11
##sequence-region NZ_PYKE01000032.1 1 1749
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000032.1	RefSeq	region	1	1749	.	+	.	ID=NZ_PYKE01000032.1:1..1749;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000032.1	RefSeq	gene	1	1725	.	+	.	ID=gene-C9F05_RS01950;Name=C9F05_RS01950;gbkey=Gene;gene_biotype=rRNA;locus_tag=C9F05_RS01950;old_locus_tag=C9F05_01985;partial=true;start_range=.,1
NZ_PYKE01000032.1	cmsearch	rRNA	1	1725	.	+	.	ID=rna-C9F05_RS01950;Parent=gene-C9F05_RS01950;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS01950;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_PYKE01000032.1	cmsearch	exon	1	1725	.	+	.	ID=exon-C9F05_RS01950-1;Parent=rna-C9F05_RS01950;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=C9F05_RS01950;partial=true;product=23S ribosomal RNA;start_range=.,1
##sequence-region NZ_PYKE01000155.1 1 1746
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000155.1	RefSeq	region	1	1746	.	+	.	ID=NZ_PYKE01000155.1:1..1746;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000155.1	RefSeq	gene	1	217	.	+	.	ID=gene-C9F05_RS10915;Name=C9F05_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10915;old_locus_tag=C9F05_11200;partial=true;start_range=.,1
NZ_PYKE01000155.1	Protein Homology	CDS	1	217	.	+	1	ID=cds-WP_135370268.1;Parent=gene-C9F05_RS10915;Dbxref=GenBank:WP_135370268.1;Name=WP_135370268.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611505.1;locus_tag=C9F05_RS10915;partial=true;product=integrase core domain-containing protein;protein_id=WP_135370268.1;start_range=.,1;transl_table=11
NZ_PYKE01000155.1	RefSeq	gene	384	1562	.	-	.	ID=gene-C9F05_RS10920;Name=C9F05_RS10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10920;old_locus_tag=C9F05_11205
NZ_PYKE01000155.1	Protein Homology	CDS	384	1562	.	-	0	ID=cds-WP_079953618.1;Parent=gene-C9F05_RS10920;Dbxref=GenBank:WP_079953618.1;Name=WP_079953618.1;Ontology_term=GO:0009103,GO:0008754,GO:0008755,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=O-antigen ligase activity|0008754||IEA,O antigen polymerase activity|0008755||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: protein motif:HMM:NF016800.6;locus_tag=C9F05_RS10920;product=O-antigen ligase family protein;protein_id=WP_079953618.1;transl_table=11
##sequence-region NZ_PYKE01000057.1 1 1743
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000057.1	RefSeq	region	1	1743	.	+	.	ID=NZ_PYKE01000057.1:1..1743;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000057.1	RefSeq	gene	2	727	.	+	.	ID=gene-C9F05_RS03460;Name=C9F05_RS03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03460;old_locus_tag=C9F05_03520
NZ_PYKE01000057.1	Protein Homology	CDS	2	727	.	+	0	ID=cds-WP_255121300.1;Parent=gene-C9F05_RS03460;Dbxref=GenBank:WP_255121300.1;Name=WP_255121300.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001574634.1;locus_tag=C9F05_RS03460;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_255121300.1;transl_table=11
NZ_PYKE01000057.1	RefSeq	gene	724	1740	.	+	.	ID=gene-C9F05_RS03465;Name=rfbE;gbkey=Gene;gene=rfbE;gene_biotype=protein_coding;locus_tag=C9F05_RS03465;old_locus_tag=C9F05_03525
NZ_PYKE01000057.1	Protein Homology	CDS	724	1740	.	+	0	ID=cds-WP_000770933.1;Parent=gene-C9F05_RS03465;Dbxref=GenBank:WP_000770933.1;Name=WP_000770933.1;gbkey=CDS;gene=rfbE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000770936.1;locus_tag=C9F05_RS03465;product=CDP-paratose 2-epimerase;protein_id=WP_000770933.1;transl_table=11
##sequence-region NZ_PYKE01000095.1 1 22863
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000095.1	RefSeq	region	1	22863	.	+	.	ID=NZ_PYKE01000095.1:1..22863;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000095.1	RefSeq	gene	1	852	.	+	.	ID=gene-C9F05_RS06825;Name=C9F05_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06825;old_locus_tag=C9F05_06960;partial=true;start_range=.,1
NZ_PYKE01000095.1	Protein Homology	CDS	1	852	.	+	0	ID=cds-WP_135370134.1;Parent=gene-C9F05_RS06825;Dbxref=GenBank:WP_135370134.1;Name=WP_135370134.1;Ontology_term=GO:0009061,GO:0019645,GO:0009389,GO:0005886,GO:0009390;gbkey=CDS;go_component=plasma membrane|0005886||IEA,dimethyl sulfoxide reductase complex|0009390||IEA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA;go_process=anaerobic respiration|0009061||IEA,anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460456.1;locus_tag=C9F05_RS06825;partial=true;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_135370134.1;start_range=.,1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	895	1509	.	+	.	ID=gene-C9F05_RS06830;Name=dmsD;gbkey=Gene;gene=dmsD;gene_biotype=protein_coding;locus_tag=C9F05_RS06830;old_locus_tag=C9F05_06965
NZ_PYKE01000095.1	Protein Homology	CDS	895	1509	.	+	0	ID=cds-WP_135370135.1;Parent=gene-C9F05_RS06830;Dbxref=GenBank:WP_135370135.1;Name=WP_135370135.1;gbkey=CDS;gene=dmsD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460455.1;locus_tag=C9F05_RS06830;product=Tat proofreading chaperone DmsD;protein_id=WP_135370135.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	1814	2524	.	+	.	ID=gene-C9F05_RS06835;Name=osmY;gbkey=Gene;gene=osmY;gene_biotype=protein_coding;locus_tag=C9F05_RS06835;old_locus_tag=C9F05_06970
NZ_PYKE01000095.1	Protein Homology	CDS	1814	2524	.	+	0	ID=cds-WP_000556891.1;Parent=gene-C9F05_RS06835;Dbxref=GenBank:WP_000556891.1;Name=WP_000556891.1;gbkey=CDS;gene=osmY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460454.1;locus_tag=C9F05_RS06835;product=osmoprotectant ABC transporter permease OsmY;protein_id=WP_000556891.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	2553	3455	.	+	.	ID=gene-C9F05_RS06840;Name=osmX;gbkey=Gene;gene=osmX;gene_biotype=protein_coding;locus_tag=C9F05_RS06840;old_locus_tag=C9F05_06975
NZ_PYKE01000095.1	Protein Homology	CDS	2553	3455	.	+	0	ID=cds-WP_001211193.1;Parent=gene-C9F05_RS06840;Dbxref=GenBank:WP_001211193.1;Name=WP_001211193.1;gbkey=CDS;gene=osmX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460453.1;locus_tag=C9F05_RS06840;product=osmoprotectant ABC transporter substrate-binding protein OsmX;protein_id=WP_001211193.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	3465	4112	.	+	.	ID=gene-C9F05_RS06845;Name=osmW;gbkey=Gene;gene=osmW;gene_biotype=protein_coding;locus_tag=C9F05_RS06845;old_locus_tag=C9F05_06980
NZ_PYKE01000095.1	Protein Homology	CDS	3465	4112	.	+	0	ID=cds-WP_000379677.1;Parent=gene-C9F05_RS06845;Dbxref=GenBank:WP_000379677.1;Name=WP_000379677.1;gbkey=CDS;gene=osmW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460452.1;locus_tag=C9F05_RS06845;product=osmoprotectant ABC transporter permease OsmW;protein_id=WP_000379677.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	4112	5260	.	+	.	ID=gene-C9F05_RS06850;Name=osmV;gbkey=Gene;gene=osmV;gene_biotype=protein_coding;locus_tag=C9F05_RS06850;old_locus_tag=C9F05_06985
NZ_PYKE01000095.1	Protein Homology	CDS	4112	5260	.	+	0	ID=cds-WP_000593093.1;Parent=gene-C9F05_RS06850;Dbxref=GenBank:WP_000593093.1;Name=WP_000593093.1;gbkey=CDS;gene=osmV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460451.1;locus_tag=C9F05_RS06850;product=osmoprotectant ABC transporter ATP-binding protein OsmV;protein_id=WP_000593093.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	5396	6685	.	+	.	ID=gene-C9F05_RS06855;Name=clcB;gbkey=Gene;gene=clcB;gene_biotype=protein_coding;locus_tag=C9F05_RS06855;old_locus_tag=C9F05_06990
NZ_PYKE01000095.1	Protein Homology	CDS	5396	6685	.	+	0	ID=cds-WP_000554906.1;Parent=gene-C9F05_RS06855;Dbxref=GenBank:WP_000554906.1;Name=WP_000554906.1;Ontology_term=GO:0006821,GO:0010447,GO:0005247,GO:0016020;gbkey=CDS;gene=clcB;go_component=membrane|0016020||IEA;go_function=voltage-gated chloride channel activity|0005247||IEA;go_process=chloride transport|0006821||IEA,response to acidic pH|0010447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460450.3;locus_tag=C9F05_RS06855;product=voltage-gated ClC-type chloride channel ClcB;protein_id=WP_000554906.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	6641	7336	.	-	.	ID=gene-C9F05_RS06860;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=C9F05_RS06860;old_locus_tag=C9F05_06995
NZ_PYKE01000095.1	Protein Homology	CDS	6641	7336	.	-	0	ID=cds-WP_000919206.1;Parent=gene-C9F05_RS06860;Dbxref=GenBank:WP_000919206.1;Name=WP_000919206.1;Ontology_term=GO:0009102,GO:0000287,GO:0004141,GO:0005524;gbkey=CDS;gene=bioD;go_function=magnesium ion binding|0000287||IEA,dethiobiotin synthase activity|0004141||IEA,ATP binding|0005524||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460449.1;locus_tag=C9F05_RS06860;product=dethiobiotin synthase;protein_id=WP_000919206.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	7462	8682	.	-	.	ID=gene-C9F05_RS06865;Name=mlc;gbkey=Gene;gene=mlc;gene_biotype=protein_coding;gene_synonym=dgsA;locus_tag=C9F05_RS06865;old_locus_tag=C9F05_07000
NZ_PYKE01000095.1	Protein Homology	CDS	7462	8682	.	-	0	ID=cds-WP_000225095.1;Parent=gene-C9F05_RS06865;Dbxref=GenBank:WP_000225095.1;Name=WP_000225095.1;Ontology_term=GO:0006355,GO:0003677,GO:0046872;gbkey=CDS;gene=mlc;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460448.1;locus_tag=C9F05_RS06865;product=sugar metabolism global transcriptional regulator Mlc;protein_id=WP_000225095.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	8810	9709	.	-	.	ID=gene-C9F05_RS06870;Name=C9F05_RS06870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06870;old_locus_tag=C9F05_07010
NZ_PYKE01000095.1	Protein Homology	CDS	8810	9709	.	-	0	ID=cds-WP_086801278.1;Parent=gene-C9F05_RS06870;Dbxref=GenBank:WP_086801278.1;Name=WP_086801278.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460447.1;locus_tag=C9F05_RS06870;product=LysR family transcriptional regulator;protein_id=WP_086801278.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	9829	11082	.	+	.	ID=gene-C9F05_RS06875;Name=C9F05_RS06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06875;old_locus_tag=C9F05_07015
NZ_PYKE01000095.1	Protein Homology	CDS	9829	11082	.	+	0	ID=cds-WP_000091792.1;Parent=gene-C9F05_RS06875;Dbxref=GenBank:WP_000091792.1;Name=WP_000091792.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460446.1;locus_tag=C9F05_RS06875;product=MFS transporter;protein_id=WP_000091792.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	11149	11241	.	-	.	ID=gene-C9F05_RS23655;Name=C9F05_RS23655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23655
NZ_PYKE01000095.1	Protein Homology	CDS	11149	11241	.	-	0	ID=cds-WP_001068154.1;Parent=gene-C9F05_RS23655;Dbxref=GenBank:WP_001068154.1;Name=WP_001068154.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033695.1;locus_tag=C9F05_RS23655;product=KPN_01571 family protein;protein_id=WP_001068154.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	11477	11728	.	+	.	ID=gene-C9F05_RS06880;Name=asr;gbkey=Gene;gene=asr;gene_biotype=protein_coding;locus_tag=C9F05_RS06880;old_locus_tag=C9F05_07020
NZ_PYKE01000095.1	Protein Homology	CDS	11477	11728	.	+	0	ID=cds-WP_001766314.1;Parent=gene-C9F05_RS06880;Dbxref=GenBank:WP_001766314.1;Name=WP_001766314.1;gbkey=CDS;gene=asr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001698353.1;locus_tag=C9F05_RS06880;product=acid resistance repetitive basic protein Asr;protein_id=WP_001766314.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	11997	12818	.	+	.	ID=gene-C9F05_RS06885;Name=C9F05_RS06885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06885;old_locus_tag=C9F05_07025
NZ_PYKE01000095.1	Protein Homology	CDS	11997	12818	.	+	0	ID=cds-WP_000549641.1;Parent=gene-C9F05_RS06885;Dbxref=GenBank:WP_000549641.1;Name=WP_000549641.1;Ontology_term=GO:0006508,GO:0004252,GO:0008233,GO:0008236;gbkey=CDS;go_function=serine-type endopeptidase activity|0004252||IEA,peptidase activity|0008233||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460444.1;locus_tag=C9F05_RS06885;product=trypsin-like serine peptidase;protein_id=WP_000549641.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	12853	13182	.	-	.	ID=gene-C9F05_RS06890;Name=mdtI;gbkey=Gene;gene=mdtI;gene_biotype=protein_coding;locus_tag=C9F05_RS06890;old_locus_tag=C9F05_07030
NZ_PYKE01000095.1	Protein Homology	CDS	12853	13182	.	-	0	ID=cds-WP_001183821.1;Parent=gene-C9F05_RS06890;Dbxref=GenBank:WP_001183821.1;Name=WP_001183821.1;gbkey=CDS;gene=mdtI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460443.1;locus_tag=C9F05_RS06890;product=multidrug/spermidine efflux SMR transporter subunit MdtI;protein_id=WP_001183821.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	13169	13531	.	-	.	ID=gene-C9F05_RS06895;Name=mdtJ;gbkey=Gene;gene=mdtJ;gene_biotype=protein_coding;locus_tag=C9F05_RS06895;old_locus_tag=C9F05_07035
NZ_PYKE01000095.1	Protein Homology	CDS	13169	13531	.	-	0	ID=cds-WP_000500278.1;Parent=gene-C9F05_RS06895;Dbxref=GenBank:WP_000500278.1;Name=WP_000500278.1;Ontology_term=GO:0015848,GO:0015606,GO:0016020;gbkey=CDS;gene=mdtJ;go_component=membrane|0016020||IEA;go_function=spermidine transmembrane transporter activity|0015606||IEA;go_process=spermidine transport|0015848||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460442.1;locus_tag=C9F05_RS06895;product=multidrug/spermidine efflux SMR transporter subunit MdtJ;protein_id=WP_000500278.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	13643	13813	.	-	.	ID=gene-C9F05_RS24115;Name=C9F05_RS24115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24115;old_locus_tag=C9F05_07040
NZ_PYKE01000095.1	Protein Homology	CDS	13643	13813	.	-	0	ID=cds-WP_001539987.1;Parent=gene-C9F05_RS24115;Dbxref=GenBank:WP_001539987.1;Name=WP_001539987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001334396.1;locus_tag=C9F05_RS24115;product=protein YdgV;protein_id=WP_001539987.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	13949	14983	.	+	.	ID=gene-C9F05_RS06905;Name=C9F05_RS06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06905;old_locus_tag=C9F05_07045
NZ_PYKE01000095.1	Protein Homology	CDS	13949	14983	.	+	0	ID=cds-WP_001118268.1;Parent=gene-C9F05_RS06905;Dbxref=GenBank:WP_001118268.1;Name=WP_001118268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460441.1;locus_tag=C9F05_RS06905;product=AI-2E family transporter;protein_id=WP_001118268.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	15158	16546	.	-	.	ID=gene-C9F05_RS06910;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;locus_tag=C9F05_RS06910;old_locus_tag=C9F05_07050
NZ_PYKE01000095.1	Protein Homology	CDS	15158	16546	.	-	0	ID=cds-WP_000014056.1;Parent=gene-C9F05_RS06910;Dbxref=GenBank:WP_000014056.1;Name=WP_000014056.1;Ontology_term=GO:0008750,GO:0050661,GO:0016020;gbkey=CDS;gene=pntB;go_component=membrane|0016020||IEA;go_function=proton-translocating NAD(P)+ transhydrogenase activity|0008750||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000014033.1;locus_tag=C9F05_RS06910;product=Re/Si-specific NAD(P)(+) transhydrogenase subunit beta;protein_id=WP_000014056.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	16557	18086	.	-	.	ID=gene-C9F05_RS06915;Name=pntA;gbkey=Gene;gene=pntA;gene_biotype=protein_coding;locus_tag=C9F05_RS06915;old_locus_tag=C9F05_07055
NZ_PYKE01000095.1	Protein Homology	CDS	16557	18086	.	-	0	ID=cds-WP_001219360.1;Parent=gene-C9F05_RS06915;Dbxref=GenBank:WP_001219360.1;Name=WP_001219360.1;Ontology_term=GO:1902600,GO:0008750;gbkey=CDS;gene=pntA;go_function=proton-translocating NAD(P)+ transhydrogenase activity|0008750||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460439.1;locus_tag=C9F05_RS06915;product=Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha;protein_id=WP_001219360.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	18613	19557	.	+	.	ID=gene-C9F05_RS06920;Name=ydgH;gbkey=Gene;gene=ydgH;gene_biotype=protein_coding;locus_tag=C9F05_RS06920;old_locus_tag=C9F05_07060
NZ_PYKE01000095.1	Protein Homology	CDS	18613	19557	.	+	0	ID=cds-WP_000769294.1;Parent=gene-C9F05_RS06920;Dbxref=GenBank:WP_000769294.1;Name=WP_000769294.1;gbkey=CDS;gene=ydgH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460438.1;locus_tag=C9F05_RS06920;product=DUF1471 family protein YdgH;protein_id=WP_000769294.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	19856	21238	.	+	.	ID=gene-C9F05_RS06925;Name=C9F05_RS06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06925;old_locus_tag=C9F05_07065
NZ_PYKE01000095.1	Protein Homology	CDS	19856	21238	.	+	0	ID=cds-WP_000412353.1;Parent=gene-C9F05_RS06925;Dbxref=GenBank:WP_000412353.1;Name=WP_000412353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460437.1;locus_tag=C9F05_RS06925;product=amino acid permease;protein_id=WP_000412353.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	21300	21635	.	-	.	ID=gene-C9F05_RS06930;Name=C9F05_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06930;old_locus_tag=C9F05_07070
NZ_PYKE01000095.1	Protein Homology	CDS	21300	21635	.	-	0	ID=cds-WP_000524877.1;Parent=gene-C9F05_RS06930;Dbxref=GenBank:WP_000524877.1;Name=WP_000524877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460436.1;locus_tag=C9F05_RS06930;product=GlpM family protein;protein_id=WP_000524877.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	21762	22493	.	+	.	ID=gene-C9F05_RS06935;Name=rstA;gbkey=Gene;gene=rstA;gene_biotype=protein_coding;locus_tag=C9F05_RS06935;old_locus_tag=C9F05_07075
NZ_PYKE01000095.1	Protein Homology	CDS	21762	22493	.	+	0	ID=cds-WP_001080048.1;Parent=gene-C9F05_RS06935;Dbxref=GenBank:WP_001080048.1;Name=WP_001080048.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=rstA;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460435.1;locus_tag=C9F05_RS06935;product=two-component system response regulator RstA;protein_id=WP_001080048.1;transl_table=11
NZ_PYKE01000095.1	RefSeq	gene	22671	22863	.	-	.	ID=gene-C9F05_RS06940;Name=C9F05_RS06940;end_range=22863,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06940;old_locus_tag=C9F05_07080;partial=true
NZ_PYKE01000095.1	Protein Homology	CDS	22671	22863	.	-	1	ID=cds-WP_255121304.1;Parent=gene-C9F05_RS06940;Dbxref=GenBank:WP_255121304.1;Name=WP_255121304.1;end_range=22863,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001691678.1;locus_tag=C9F05_RS06940;partial=true;product=hypothetical protein;protein_id=WP_255121304.1;transl_table=11
##sequence-region NZ_PYKE01000114.1 1 1687
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000114.1	RefSeq	region	1	1687	.	+	.	ID=NZ_PYKE01000114.1:1..1687;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000114.1	RefSeq	gene	1	1559	.	-	.	ID=gene-C9F05_RS08440;Name=C9F05_RS08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08440;old_locus_tag=C9F05_08635;partial=true;start_range=.,1
NZ_PYKE01000114.1	Protein Homology	CDS	1	1559	.	-	0	ID=cds-WP_135370181.1;Parent=gene-C9F05_RS08440;Dbxref=GenBank:WP_135370181.1;Name=WP_135370181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461257.1;locus_tag=C9F05_RS08440;partial=true;product=vWA domain-containing protein;protein_id=WP_135370181.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000189.1 1 1679
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000189.1	RefSeq	region	1	1679	.	+	.	ID=NZ_PYKE01000189.1:1..1679;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000189.1	RefSeq	gene	121	558	.	+	.	ID=gene-C9F05_RS12440;Name=C9F05_RS12440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12440;old_locus_tag=C9F05_12800
NZ_PYKE01000189.1	Protein Homology	CDS	121	558	.	+	0	ID=cds-WP_000158344.1;Parent=gene-C9F05_RS12440;Dbxref=GenBank:WP_000158344.1;Name=WP_000158344.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459036.1;locus_tag=C9F05_RS12440;product=winged helix-turn-helix domain-containing protein;protein_id=WP_000158344.1;transl_table=11
NZ_PYKE01000189.1	RefSeq	gene	575	1570	.	-	.	ID=gene-C9F05_RS12445;Name=C9F05_RS12445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS12445;old_locus_tag=C9F05_12805
NZ_PYKE01000189.1	Protein Homology	CDS	575	1570	.	-	0	ID=cds-WP_127173053.1;Parent=gene-C9F05_RS12445;Dbxref=GenBank:WP_127173053.1;Name=WP_127173053.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017466218.1;locus_tag=C9F05_RS12445;product=LysR family transcriptional regulator;protein_id=WP_127173053.1;transl_table=11
##sequence-region NZ_PYKE01000151.1 1 22654
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000151.1	RefSeq	region	1	22654	.	+	.	ID=NZ_PYKE01000151.1:1..22654;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000151.1	RefSeq	gene	1	839	.	-	.	ID=gene-C9F05_RS10745;Name=C9F05_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10745;old_locus_tag=C9F05_11010;partial=true;start_range=.,1
NZ_PYKE01000151.1	Protein Homology	CDS	1	839	.	-	0	ID=cds-WP_193580310.1;Parent=gene-C9F05_RS10745;Dbxref=GenBank:WP_193580310.1;Name=WP_193580310.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459936.1;locus_tag=C9F05_RS10745;partial=true;product=DNA translocase FtsK 4TM domain-containing protein;protein_id=WP_193580310.1;start_range=.,1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	974	1468	.	-	.	ID=gene-C9F05_RS10750;Name=lrp;gbkey=Gene;gene=lrp;gene_biotype=protein_coding;locus_tag=C9F05_RS10750;old_locus_tag=C9F05_11015
NZ_PYKE01000151.1	Protein Homology	CDS	974	1468	.	-	0	ID=cds-WP_000228469.1;Parent=gene-C9F05_RS10750;Dbxref=GenBank:WP_000228469.1;Name=WP_000228469.1;gbkey=CDS;gene=lrp;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001591745.1;locus_tag=C9F05_RS10750;product=leucine-responsive transcriptional regulator Lrp;protein_id=WP_000228469.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	2014	2982	.	+	.	ID=gene-C9F05_RS10755;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=C9F05_RS10755;old_locus_tag=C9F05_11025
NZ_PYKE01000151.1	Protein Homology	CDS	2014	2982	.	+	0	ID=cds-WP_000537406.1;Parent=gene-C9F05_RS10755;Dbxref=GenBank:WP_000537406.1;Name=WP_000537406.1;Ontology_term=GO:0019430,GO:0004791;gbkey=CDS;gene=trxB;go_function=thioredoxin-disulfide reductase (NADPH) activity|0004791||IEA;go_process=removal of superoxide radicals|0019430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459934.1;locus_tag=C9F05_RS10755;product=thioredoxin-disulfide reductase;protein_id=WP_000537406.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	3096	4862	.	+	.	ID=gene-C9F05_RS10760;Name=cydD;gbkey=Gene;gene=cydD;gene_biotype=protein_coding;locus_tag=C9F05_RS10760;old_locus_tag=C9F05_11030
NZ_PYKE01000151.1	Protein Homology	CDS	3096	4862	.	+	0	ID=cds-WP_001044541.1;Parent=gene-C9F05_RS10760;Dbxref=GenBank:WP_001044541.1;Name=WP_001044541.1;Ontology_term=GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;gene=cydD;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459933.1;locus_tag=C9F05_RS10760;product=heme ABC transporter permease/ATP-binding protein CydD;protein_id=WP_001044541.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	4863	6584	.	+	.	ID=gene-C9F05_RS10765;Name=cydC;gbkey=Gene;gene=cydC;gene_biotype=protein_coding;locus_tag=C9F05_RS10765;old_locus_tag=C9F05_11035
NZ_PYKE01000151.1	Protein Homology	CDS	4863	6584	.	+	0	ID=cds-WP_135370265.1;Parent=gene-C9F05_RS10765;Dbxref=GenBank:WP_135370265.1;Name=WP_135370265.1;Ontology_term=GO:0045454,GO:0005524,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;gene=cydC;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459932.1;locus_tag=C9F05_RS10765;product=heme ABC transporter ATP-binding protein/permease CydC;protein_id=WP_135370265.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	6629	7333	.	+	.	ID=gene-C9F05_RS10770;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=C9F05_RS10770;old_locus_tag=C9F05_11040
NZ_PYKE01000151.1	Protein Homology	CDS	6629	7333	.	+	0	ID=cds-WP_064001065.1;Parent=gene-C9F05_RS10770;Dbxref=GenBank:WP_064001065.1;Name=WP_064001065.1;Ontology_term=GO:0006508,GO:0008914;gbkey=CDS;gene=aat;go_function=leucyl-tRNA--protein transferase activity|0008914||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459931.1;locus_tag=C9F05_RS10770;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_064001065.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	7645	7863	.	+	.	ID=gene-C9F05_RS10780;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=C9F05_RS10780;old_locus_tag=C9F05_11050
NZ_PYKE01000151.1	Protein Homology	CDS	7645	7863	.	+	0	ID=cds-WP_001040187.1;Parent=gene-C9F05_RS10780;Dbxref=GenBank:WP_001040187.1;Name=WP_001040187.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001040186.1;locus_tag=C9F05_RS10780;product=translation initiation factor IF-1;protein_id=WP_001040187.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	7954	8865	.	-	.	ID=gene-C9F05_RS10785;Name=C9F05_RS10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10785;old_locus_tag=C9F05_11055
NZ_PYKE01000151.1	Protein Homology	CDS	7954	8865	.	-	0	ID=cds-WP_000597928.1;Parent=gene-C9F05_RS10785;Dbxref=GenBank:WP_000597928.1;Name=WP_000597928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459928.1;locus_tag=C9F05_RS10785;product=LysR family transcriptional regulator;protein_id=WP_000597928.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	8974	9834	.	+	.	ID=gene-C9F05_RS10790;Name=C9F05_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10790;old_locus_tag=C9F05_11060
NZ_PYKE01000151.1	Protein Homology	CDS	8974	9834	.	+	0	ID=cds-WP_023237948.1;Parent=gene-C9F05_RS10790;Dbxref=GenBank:WP_023237948.1;Name=WP_023237948.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459927.1;locus_tag=C9F05_RS10790;product=pirin family protein;protein_id=WP_023237948.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	9854	10531	.	+	.	ID=gene-C9F05_RS10795;Name=C9F05_RS10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10795;old_locus_tag=C9F05_11065
NZ_PYKE01000151.1	Protein Homology	CDS	9854	10531	.	+	0	ID=cds-WP_000097897.1;Parent=gene-C9F05_RS10795;Dbxref=GenBank:WP_000097897.1;Name=WP_000097897.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459926.1;locus_tag=C9F05_RS10795;product=hydrolase;protein_id=WP_000097897.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	10681	10768	.	+	.	ID=gene-C9F05_RS10800;Name=C9F05_RS10800;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS10800;old_locus_tag=C9F05_11070
NZ_PYKE01000151.1	tRNAscan-SE	tRNA	10681	10768	.	+	.	ID=rna-C9F05_RS10800;Parent=gene-C9F05_RS10800;anticodon=(pos:10715..10717);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS10800;product=tRNA-Ser
NZ_PYKE01000151.1	tRNAscan-SE	exon	10681	10768	.	+	.	ID=exon-C9F05_RS10800-1;Parent=rna-C9F05_RS10800;anticodon=(pos:10715..10717);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS10800;product=tRNA-Ser
NZ_PYKE01000151.1	RefSeq	pseudogene	11405	11758	.	+	.	ID=gene-C9F05_RS10810;Name=C9F05_RS10810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS10810;old_locus_tag=C9F05_11085;partial=true;pseudo=true;start_range=.,11405
NZ_PYKE01000151.1	Protein Homology	CDS	11405	11758	.	+	0	ID=cds-C9F05_RS10810;Parent=gene-C9F05_RS10810;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524896.1;locus_tag=C9F05_RS10810;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,11405;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	11920	12117	.	+	.	ID=gene-C9F05_RS10815;Name=C9F05_RS10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10815;old_locus_tag=C9F05_11090
NZ_PYKE01000151.1	Protein Homology	CDS	11920	12117	.	+	0	ID=cds-WP_001117984.1;Parent=gene-C9F05_RS10815;Dbxref=GenBank:WP_001117984.1;Name=WP_001117984.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004111984.1;locus_tag=C9F05_RS10815;product=hypothetical protein;protein_id=WP_001117984.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	12330	14606	.	-	.	ID=gene-C9F05_RS10820;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=C9F05_RS10820;old_locus_tag=C9F05_11095
NZ_PYKE01000151.1	Protein Homology	CDS	12330	14606	.	-	0	ID=cds-WP_000934064.1;Parent=gene-C9F05_RS10820;Dbxref=GenBank:WP_000934064.1;Name=WP_000934064.1;Ontology_term=GO:0043335,GO:0005524,GO:0016887;gbkey=CDS;gene=clpA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein unfolding|0043335||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459922.1;locus_tag=C9F05_RS10820;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_000934064.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	14637	14957	.	-	.	ID=gene-C9F05_RS10825;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=C9F05_RS10825;old_locus_tag=C9F05_11100
NZ_PYKE01000151.1	Protein Homology	CDS	14637	14957	.	-	0	ID=cds-WP_000520789.1;Parent=gene-C9F05_RS10825;Dbxref=GenBank:WP_000520789.1;Name=WP_000520789.1;Ontology_term=GO:0006508;gbkey=CDS;gene=clpS;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128368.1;locus_tag=C9F05_RS10825;product=ATP-dependent Clp protease adapter ClpS;protein_id=WP_000520789.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	15053	15130	.	-	.	ID=gene-C9F05_RS23675;Name=C9F05_RS23675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23675
NZ_PYKE01000151.1	Protein Homology	CDS	15053	15130	.	-	0	ID=cds-WP_212742690.1;Parent=gene-C9F05_RS23675;Dbxref=GenBank:WP_212742690.1;Name=WP_212742690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051179.1;locus_tag=C9F05_RS23675;product=hypothetical protein;protein_id=WP_212742690.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	15281	15502	.	+	.	ID=gene-C9F05_RS10830;Name=cspD;gbkey=Gene;gene=cspD;gene_biotype=protein_coding;locus_tag=C9F05_RS10830;old_locus_tag=C9F05_11105
NZ_PYKE01000151.1	Protein Homology	CDS	15281	15502	.	+	0	ID=cds-WP_000447499.1;Parent=gene-C9F05_RS10830;Dbxref=GenBank:WP_000447499.1;Name=WP_000447499.1;gbkey=CDS;gene=cspD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459920.1;locus_tag=C9F05_RS10830;product=cold shock-like protein CspD;protein_id=WP_000447499.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	15632	17578	.	-	.	ID=gene-C9F05_RS10835;Name=macB;gbkey=Gene;gene=macB;gene_biotype=protein_coding;locus_tag=C9F05_RS10835;old_locus_tag=C9F05_11115
NZ_PYKE01000151.1	Protein Homology	CDS	15632	17578	.	-	0	ID=cds-WP_135370266.1;Parent=gene-C9F05_RS10835;Dbxref=GenBank:WP_135370266.1;Name=WP_135370266.1;Ontology_term=GO:0005524,GO:0022857,GO:1990195;gbkey=CDS;gene=macB;go_component=macrolide transmembrane transporter complex|1990195||IEA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459919.1;locus_tag=C9F05_RS10835;product=macrolide ABC transporter ATP-binding protein/permease MacB;protein_id=WP_135370266.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	17575	18693	.	-	.	ID=gene-C9F05_RS10840;Name=macA;gbkey=Gene;gene=macA;gene_biotype=protein_coding;locus_tag=C9F05_RS10840;old_locus_tag=C9F05_11120
NZ_PYKE01000151.1	Protein Homology	CDS	17575	18693	.	-	0	ID=cds-WP_001523024.1;Parent=gene-C9F05_RS10840;Dbxref=GenBank:WP_001523024.1;Name=WP_001523024.1;Ontology_term=GO:1990961,GO:0022857,GO:0019898,GO:1990195;gbkey=CDS;gene=macA;go_component=extrinsic component of membrane|0019898||IEA,macrolide transmembrane transporter complex|1990195||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459918.1;locus_tag=C9F05_RS10840;product=macrolide transporter subunit MacA;protein_id=WP_001523024.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	18839	19789	.	+	.	ID=gene-C9F05_RS10845;Name=C9F05_RS10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10845;old_locus_tag=C9F05_11125
NZ_PYKE01000151.1	Protein Homology	CDS	18839	19789	.	+	0	ID=cds-WP_135370267.1;Parent=gene-C9F05_RS10845;Dbxref=GenBank:WP_135370267.1;Name=WP_135370267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519667.1;locus_tag=C9F05_RS10845;product=VirK/YbjX family protein;protein_id=WP_135370267.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	19786	21444	.	-	.	ID=gene-C9F05_RS10850;Name=C9F05_RS10850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10850;old_locus_tag=C9F05_11130
NZ_PYKE01000151.1	Protein Homology	CDS	19786	21444	.	-	0	ID=cds-WP_000599763.1;Parent=gene-C9F05_RS10850;Dbxref=GenBank:WP_000599763.1;Name=WP_000599763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459916.2;locus_tag=C9F05_RS10850;product=ATP-dependent endonuclease;protein_id=WP_000599763.1;transl_table=11
NZ_PYKE01000151.1	RefSeq	gene	21646	22545	.	+	.	ID=gene-C9F05_RS10855;Name=C9F05_RS10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10855;old_locus_tag=C9F05_11140
NZ_PYKE01000151.1	Protein Homology	CDS	21646	22545	.	+	0	ID=cds-WP_000491118.1;Parent=gene-C9F05_RS10855;Dbxref=GenBank:WP_000491118.1;Name=WP_000491118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459915.1;locus_tag=C9F05_RS10855;product=lysine exporter LysO family protein;protein_id=WP_000491118.1;transl_table=11
##sequence-region NZ_PYKE01000020.1 1 22441
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000020.1	RefSeq	region	1	22441	.	+	.	ID=NZ_PYKE01000020.1:1..22441;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000020.1	RefSeq	gene	309	1103	.	+	.	ID=gene-C9F05_RS00850;Name=pduF;gbkey=Gene;gene=pduF;gene_biotype=protein_coding;locus_tag=C9F05_RS00850;old_locus_tag=C9F05_00860
NZ_PYKE01000020.1	Protein Homology	CDS	309	1103	.	+	0	ID=cds-WP_001000023.1;Parent=gene-C9F05_RS00850;Dbxref=GenBank:WP_001000023.1;Name=WP_001000023.1;gbkey=CDS;gene=pduF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460982.1;locus_tag=C9F05_RS00850;product=propanediol diffusion facilitator PduF;protein_id=WP_001000023.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	1320	2231	.	+	.	ID=gene-C9F05_RS00855;Name=pocR;gbkey=Gene;gene=pocR;gene_biotype=protein_coding;locus_tag=C9F05_RS00855;old_locus_tag=C9F05_00865
NZ_PYKE01000020.1	Protein Homology	CDS	1320	2231	.	+	0	ID=cds-WP_135369938.1;Parent=gene-C9F05_RS00855;Dbxref=GenBank:WP_135369938.1;Name=WP_135369938.1;Ontology_term=GO:0009236,GO:0051144,GO:0003700,GO:0043565;gbkey=CDS;gene=pocR;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=cobalamin biosynthetic process|0009236||IEA,1%2C2-propanediol catabolic process|0051144||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460981.1;locus_tag=C9F05_RS00855;product=transcriptional regulator PocR;protein_id=WP_135369938.1;transl_table=11
NZ_PYKE01000020.1	cmsearch	riboswitch	2557	2731	.	+	.	ID=id-NZ_PYKE01000020.1:2557..2731;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYKE01000020.1	RefSeq	gene	2829	4208	.	+	.	ID=gene-C9F05_RS00860;Name=C9F05_RS00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00860;old_locus_tag=C9F05_00870
NZ_PYKE01000020.1	Protein Homology	CDS	2829	4208	.	+	0	ID=cds-WP_001618366.1;Parent=gene-C9F05_RS00860;Dbxref=GenBank:WP_001618366.1;Name=WP_001618366.1;Ontology_term=GO:0042242;gbkey=CDS;go_function=cobyrinic acid a%2Cc-diamide synthase activity|0042242||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460980.1;locus_tag=C9F05_RS00860;product=cobyrinate a%2Cc-diamide synthase;protein_id=WP_001618366.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	4205	5164	.	+	.	ID=gene-C9F05_RS00865;Name=cbiB;gbkey=Gene;gene=cbiB;gene_biotype=protein_coding;locus_tag=C9F05_RS00865;old_locus_tag=C9F05_00875
NZ_PYKE01000020.1	Protein Homology	CDS	4205	5164	.	+	0	ID=cds-WP_000153647.1;Parent=gene-C9F05_RS00865;Dbxref=GenBank:WP_000153647.1;Name=WP_000153647.1;Ontology_term=GO:0009236,GO:0048472,GO:0016020;gbkey=CDS;gene=cbiB;go_component=membrane|0016020||IEA;go_function=threonine-phosphate decarboxylase activity|0048472||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460979.1;locus_tag=C9F05_RS00865;product=adenosylcobinamide-phosphate synthase CbiB;protein_id=WP_000153647.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	5175	5807	.	+	.	ID=gene-C9F05_RS00870;Name=C9F05_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00870;old_locus_tag=C9F05_00880
NZ_PYKE01000020.1	Protein Homology	CDS	5175	5807	.	+	0	ID=cds-WP_000558995.1;Parent=gene-C9F05_RS00870;Dbxref=GenBank:WP_000558995.1;Name=WP_000558995.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460978.1;locus_tag=C9F05_RS00870;product=cobalt-precorrin-8 methylmutase;protein_id=WP_000558995.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	5807	6946	.	+	.	ID=gene-C9F05_RS00875;Name=cbiD;gbkey=Gene;gene=cbiD;gene_biotype=protein_coding;locus_tag=C9F05_RS00875;old_locus_tag=C9F05_00885
NZ_PYKE01000020.1	Protein Homology	CDS	5807	6946	.	+	0	ID=cds-WP_135369939.1;Parent=gene-C9F05_RS00875;Dbxref=GenBank:WP_135369939.1;Name=WP_135369939.1;Ontology_term=GO:0009236,GO:0005737;gbkey=CDS;gene=cbiD;go_component=cytoplasm|0005737||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460977.1;locus_tag=C9F05_RS00875;product=cobalt-precorrin-5B (C(1))-methyltransferase CbiD;protein_id=WP_135369939.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	6940	7545	.	+	.	ID=gene-C9F05_RS00880;Name=C9F05_RS00880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00880;old_locus_tag=C9F05_00890
NZ_PYKE01000020.1	Protein Homology	CDS	6940	7545	.	+	0	ID=cds-WP_135369940.1;Parent=gene-C9F05_RS00880;Dbxref=GenBank:WP_135369940.1;Name=WP_135369940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460976.1;locus_tag=C9F05_RS00880;product=cobalt-precorrin-7 (C(5))-methyltransferase;protein_id=WP_135369940.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	7535	8113	.	+	.	ID=gene-C9F05_RS00885;Name=C9F05_RS00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00885;old_locus_tag=C9F05_00895
NZ_PYKE01000020.1	Protein Homology	CDS	7535	8113	.	+	0	ID=cds-WP_135369941.1;Parent=gene-C9F05_RS00885;Dbxref=GenBank:WP_135369941.1;Name=WP_135369941.1;Ontology_term=GO:0009236,GO:0008276;gbkey=CDS;go_function=protein methyltransferase activity|0008276||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460975.1;locus_tag=C9F05_RS00885;product=decarboxylating cobalt-precorrin-6B (C(15))-methyltransferase;protein_id=WP_135369941.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	8097	8870	.	+	.	ID=gene-C9F05_RS00890;Name=C9F05_RS00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00890;old_locus_tag=C9F05_00900
NZ_PYKE01000020.1	Protein Homology	CDS	8097	8870	.	+	0	ID=cds-WP_000004870.1;Parent=gene-C9F05_RS00890;Dbxref=GenBank:WP_000004870.1;Name=WP_000004870.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460974.1;locus_tag=C9F05_RS00890;product=cobalt-precorrin-4 methyltransferase;protein_id=WP_000004870.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	8851	9906	.	+	.	ID=gene-C9F05_RS00895;Name=cbiG;gbkey=Gene;gene=cbiG;gene_biotype=protein_coding;locus_tag=C9F05_RS00895;old_locus_tag=C9F05_00905
NZ_PYKE01000020.1	Protein Homology	CDS	8851	9906	.	+	0	ID=cds-WP_135369942.1;Parent=gene-C9F05_RS00895;Dbxref=GenBank:WP_135369942.1;Name=WP_135369942.1;gbkey=CDS;gene=cbiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460973.1;locus_tag=C9F05_RS00895;product=cobalt-precorrin 5A hydrolase;protein_id=WP_135369942.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	9906	10631	.	+	.	ID=gene-C9F05_RS00900;Name=C9F05_RS00900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00900;old_locus_tag=C9F05_00910
NZ_PYKE01000020.1	Protein Homology	CDS	9906	10631	.	+	0	ID=cds-WP_000953637.1;Parent=gene-C9F05_RS00900;Dbxref=GenBank:WP_000953637.1;Name=WP_000953637.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460972.1;locus_tag=C9F05_RS00900;product=precorrin-3B C(17)-methyltransferase;protein_id=WP_000953637.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	10628	11419	.	+	.	ID=gene-C9F05_RS00905;Name=C9F05_RS00905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00905;old_locus_tag=C9F05_00915
NZ_PYKE01000020.1	Protein Homology	CDS	10628	11419	.	+	0	ID=cds-WP_001001975.1;Parent=gene-C9F05_RS00905;Dbxref=GenBank:WP_001001975.1;Name=WP_001001975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460971.1;locus_tag=C9F05_RS00905;product=cobalt-precorrin-6A reductase;protein_id=WP_001001975.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	11422	12216	.	+	.	ID=gene-C9F05_RS00910;Name=cbiK;gbkey=Gene;gene=cbiK;gene_biotype=protein_coding;locus_tag=C9F05_RS00910;old_locus_tag=C9F05_00920
NZ_PYKE01000020.1	Protein Homology	CDS	11422	12216	.	+	0	ID=cds-WP_000709784.1;Parent=gene-C9F05_RS00910;Dbxref=GenBank:WP_000709784.1;Name=WP_000709784.1;Ontology_term=GO:0006779,GO:0016852,GO:0046906;gbkey=CDS;gene=cbiK;go_function=sirohydrochlorin cobaltochelatase activity|0016852||IEA,tetrapyrrole binding|0046906||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460970.1;locus_tag=C9F05_RS00910;product=sirohydrochlorin cobaltochelatase;protein_id=WP_000709784.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	12213	12926	.	+	.	ID=gene-C9F05_RS00915;Name=C9F05_RS00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00915;old_locus_tag=C9F05_00925
NZ_PYKE01000020.1	Protein Homology	CDS	12213	12926	.	+	0	ID=cds-WP_001013552.1;Parent=gene-C9F05_RS00915;Dbxref=GenBank:WP_001013552.1;Name=WP_001013552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460969.1;locus_tag=C9F05_RS00915;product=cobalt-factor II C(20)-methyltransferase;protein_id=WP_001013552.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	12923	13660	.	+	.	ID=gene-C9F05_RS00920;Name=cbiM;gbkey=Gene;gene=cbiM;gene_biotype=protein_coding;locus_tag=C9F05_RS00920;old_locus_tag=C9F05_00930
NZ_PYKE01000020.1	Protein Homology	CDS	12923	13660	.	+	0	ID=cds-WP_000764336.1;Parent=gene-C9F05_RS00920;Dbxref=GenBank:WP_000764336.1;Name=WP_000764336.1;Ontology_term=GO:0006824,GO:0009236,GO:0016020,GO:0043190;gbkey=CDS;gene=cbiM;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=cobalt ion transport|0006824||IEA,cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460968.3;locus_tag=C9F05_RS00920;product=cobalt ECF transporter S component CbiM;protein_id=WP_000764336.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	13662	13943	.	+	.	ID=gene-C9F05_RS00925;Name=C9F05_RS00925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00925;old_locus_tag=C9F05_00935
NZ_PYKE01000020.1	Protein Homology	CDS	13662	13943	.	+	0	ID=cds-WP_000753212.1;Parent=gene-C9F05_RS00925;Dbxref=GenBank:WP_000753212.1;Name=WP_000753212.1;Ontology_term=GO:0006824,GO:0009236,GO:0015087,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=cobalt ion transmembrane transporter activity|0015087||IEA;go_process=cobalt ion transport|0006824||IEA,cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460967.1;locus_tag=C9F05_RS00925;product=energy-coupling factor ABC transporter substrate-binding protein;protein_id=WP_000753212.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	13930	14607	.	+	.	ID=gene-C9F05_RS00930;Name=C9F05_RS00930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00930;old_locus_tag=C9F05_00940
NZ_PYKE01000020.1	Protein Homology	CDS	13930	14607	.	+	0	ID=cds-WP_000147138.1;Parent=gene-C9F05_RS00930;Dbxref=GenBank:WP_000147138.1;Name=WP_000147138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460966.1;locus_tag=C9F05_RS00930;product=energy-coupling factor ABC transporter transmembrane protein;protein_id=WP_000147138.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	14616	15431	.	+	.	ID=gene-C9F05_RS00935;Name=C9F05_RS00935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00935;old_locus_tag=C9F05_00945
NZ_PYKE01000020.1	Protein Homology	CDS	14616	15431	.	+	0	ID=cds-WP_052934636.1;Parent=gene-C9F05_RS00935;Dbxref=GenBank:WP_052934636.1;Name=WP_052934636.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460965.1;locus_tag=C9F05_RS00935;product=energy-coupling factor ABC transporter ATP-binding protein;protein_id=WP_052934636.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	15428	16948	.	+	.	ID=gene-C9F05_RS00940;Name=C9F05_RS00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00940;old_locus_tag=C9F05_00950
NZ_PYKE01000020.1	Protein Homology	CDS	15428	16948	.	+	0	ID=cds-WP_135369943.1;Parent=gene-C9F05_RS00940;Dbxref=GenBank:WP_135369943.1;Name=WP_135369943.1;Ontology_term=GO:0009236,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460964.1;locus_tag=C9F05_RS00940;product=cobyric acid synthase;protein_id=WP_135369943.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	16945	17490	.	+	.	ID=gene-C9F05_RS00945;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=protein_coding;locus_tag=C9F05_RS00945;old_locus_tag=C9F05_00955
NZ_PYKE01000020.1	Protein Homology	CDS	16945	17490	.	+	0	ID=cds-WP_000973146.1;Parent=gene-C9F05_RS00945;Dbxref=GenBank:WP_000973146.1;Name=WP_000973146.1;Ontology_term=GO:0009236,GO:0000166,GO:0043752;gbkey=CDS;gene=cobU;go_function=nucleotide binding|0000166||IEA,adenosylcobinamide kinase activity|0043752||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460963.1;locus_tag=C9F05_RS00945;product=bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase;protein_id=WP_000973146.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	17487	18230	.	+	.	ID=gene-C9F05_RS00950;Name=cobS;gbkey=Gene;gene=cobS;gene_biotype=protein_coding;locus_tag=C9F05_RS00950;old_locus_tag=C9F05_00960
NZ_PYKE01000020.1	Protein Homology	CDS	17487	18230	.	+	0	ID=cds-WP_000039997.1;Parent=gene-C9F05_RS00950;Dbxref=GenBank:WP_000039997.1;Name=WP_000039997.1;Ontology_term=GO:0009236,GO:0008818,GO:0051073;gbkey=CDS;gene=cobS;go_function=cobalamin 5'-phosphate synthase activity|0008818||IEA,adenosylcobinamide-GDP ribazoletransferase activity|0051073||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460962.1;locus_tag=C9F05_RS00950;product=adenosylcobinamide-GDP ribazoletransferase;protein_id=WP_000039997.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	18257	19327	.	+	.	ID=gene-C9F05_RS00955;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;locus_tag=C9F05_RS00955;old_locus_tag=C9F05_00965
NZ_PYKE01000020.1	Protein Homology	CDS	18257	19327	.	+	0	ID=cds-WP_001649922.1;Parent=gene-C9F05_RS00955;Dbxref=GenBank:WP_001649922.1;Name=WP_001649922.1;Ontology_term=GO:0009236,GO:0008939;gbkey=CDS;gene=cobT;go_function=nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity|0008939||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460961.1;locus_tag=C9F05_RS00955;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=WP_001649922.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	19405	20334	.	+	.	ID=gene-C9F05_RS00960;Name=ldtA;gbkey=Gene;gene=ldtA;gene_biotype=protein_coding;locus_tag=C9F05_RS00960;old_locus_tag=C9F05_00970
NZ_PYKE01000020.1	Protein Homology	CDS	19405	20334	.	+	0	ID=cds-WP_135369944.1;Parent=gene-C9F05_RS00960;Dbxref=GenBank:WP_135369944.1;Name=WP_135369944.1;Ontology_term=GO:0016740;gbkey=CDS;gene=ldtA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460960.1;locus_tag=C9F05_RS00960;product=L%2CD-transpeptidase;protein_id=WP_135369944.1;transl_table=11
NZ_PYKE01000020.1	RefSeq	gene	20562	20637	.	-	.	ID=gene-C9F05_RS00965;Name=C9F05_RS00965;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS00965;old_locus_tag=C9F05_00975
NZ_PYKE01000020.1	tRNAscan-SE	tRNA	20562	20637	.	-	.	ID=rna-C9F05_RS00965;Parent=gene-C9F05_RS00965;anticodon=(pos:complement(20602..20604));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS00965;product=tRNA-Asn
NZ_PYKE01000020.1	tRNAscan-SE	exon	20562	20637	.	-	.	ID=exon-C9F05_RS00965-1;Parent=rna-C9F05_RS00965;anticodon=(pos:complement(20602..20604));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS00965;product=tRNA-Asn
NZ_PYKE01000020.1	RefSeq	gene	20778	22235	.	-	.	ID=gene-C9F05_RS00970;Name=C9F05_RS00970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00970;old_locus_tag=C9F05_00980
NZ_PYKE01000020.1	Protein Homology	CDS	20778	22235	.	-	0	ID=cds-WP_135369945.1;Parent=gene-C9F05_RS00970;Dbxref=GenBank:WP_135369945.1;Name=WP_135369945.1;Ontology_term=GO:0055085,GO:0015297;gbkey=CDS;go_function=antiporter activity|0015297||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460959.1;locus_tag=C9F05_RS00970;product=EmmdR/YeeO family multidrug/toxin efflux MATE transporter;protein_id=WP_135369945.1;transl_table=11
##sequence-region NZ_PYKE01000285.1 1 1565
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000285.1	RefSeq	region	1	1565	.	+	.	ID=NZ_PYKE01000285.1:1..1565;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000285.1	RefSeq	gene	1	355	.	-	.	ID=gene-C9F05_RS18865;Name=C9F05_RS18865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18865;old_locus_tag=C9F05_19405;partial=true;start_range=.,1
NZ_PYKE01000285.1	Protein Homology	CDS	1	355	.	-	0	ID=cds-WP_135370543.1;Parent=gene-C9F05_RS18865;Dbxref=GenBank:WP_135370543.1;Name=WP_135370543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000628872.1;locus_tag=C9F05_RS18865;partial=true;product=hypothetical protein;protein_id=WP_135370543.1;start_range=.,1;transl_table=11
NZ_PYKE01000285.1	RefSeq	gene	345	629	.	-	.	ID=gene-C9F05_RS18870;Name=C9F05_RS18870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18870;old_locus_tag=C9F05_19410
NZ_PYKE01000285.1	Protein Homology	CDS	345	629	.	-	0	ID=cds-WP_079958642.1;Parent=gene-C9F05_RS18870;Dbxref=GenBank:WP_079958642.1;Name=WP_079958642.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026993.6;locus_tag=C9F05_RS18870;product=HNH/endonuclease VII fold putative polymorphic toxin;protein_id=WP_079958642.1;transl_table=11
NZ_PYKE01000285.1	RefSeq	gene	763	927	.	-	.	ID=gene-C9F05_RS23595;Name=C9F05_RS23595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23595
NZ_PYKE01000285.1	GeneMarkS-2+	CDS	763	927	.	-	0	ID=cds-WP_167851645.1;Parent=gene-C9F05_RS23595;Dbxref=GenBank:WP_167851645.1;Name=WP_167851645.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23595;product=hypothetical protein;protein_id=WP_167851645.1;transl_table=11
##sequence-region NZ_PYKE01000126.1 1 21941
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000126.1	RefSeq	region	1	21941	.	+	.	ID=NZ_PYKE01000126.1:1..21941;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000126.1	RefSeq	gene	456	2150	.	+	.	ID=gene-C9F05_RS09095;Name=C9F05_RS09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09095;old_locus_tag=C9F05_09340
NZ_PYKE01000126.1	Protein Homology	CDS	456	2150	.	+	0	ID=cds-WP_080214938.1;Parent=gene-C9F05_RS09095;Dbxref=GenBank:WP_080214938.1;Name=WP_080214938.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460954.1;locus_tag=C9F05_RS09095;product=SEL1-like repeat protein;protein_id=WP_080214938.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	2207	3937	.	+	.	ID=gene-C9F05_RS09100;Name=C9F05_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09100;old_locus_tag=C9F05_09345
NZ_PYKE01000126.1	Protein Homology	CDS	2207	3937	.	+	0	ID=cds-WP_135370194.1;Parent=gene-C9F05_RS09100;Dbxref=GenBank:WP_135370194.1;Name=WP_135370194.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460955.1;locus_tag=C9F05_RS09100;product=hypothetical protein;protein_id=WP_135370194.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	pseudogene	3995	4066	.	-	.	ID=gene-C9F05_RS09105;Name=C9F05_RS09105;end_range=4066,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS09105;old_locus_tag=C9F05_09350;partial=true;pseudo=true
NZ_PYKE01000126.1	Protein Homology	CDS	3995	4066	.	-	0	ID=cds-C9F05_RS09105;Parent=gene-C9F05_RS09105;Note=nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ%3B the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4066,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965590.1;locus_tag=C9F05_RS09105;partial=true;product=YajQ family cyclic di-GMP-binding protein;pseudo=true;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	4035	4775	.	+	.	ID=gene-C9F05_RS24125;Name=C9F05_RS24125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24125;old_locus_tag=C9F05_09355
NZ_PYKE01000126.1	Protein Homology	CDS	4035	4775	.	+	0	ID=cds-WP_440591217.1;Parent=gene-C9F05_RS24125;Dbxref=GenBank:WP_440591217.1;Name=WP_440591217.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012755.6;locus_tag=C9F05_RS24125;product=RHS repeat-associated core domain-containing protein;protein_id=WP_440591217.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	4775	5107	.	+	.	ID=gene-C9F05_RS09115;Name=C9F05_RS09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09115;old_locus_tag=C9F05_09360
NZ_PYKE01000126.1	Protein Homology	CDS	4775	5107	.	+	0	ID=cds-WP_135370195.1;Parent=gene-C9F05_RS09115;Dbxref=GenBank:WP_135370195.1;Name=WP_135370195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001750702.1;locus_tag=C9F05_RS09115;product=barstar family protein;protein_id=WP_135370195.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	5163	5492	.	-	.	ID=gene-C9F05_RS09120;Name=C9F05_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09120;old_locus_tag=C9F05_09365
NZ_PYKE01000126.1	Protein Homology	CDS	5163	5492	.	-	0	ID=cds-WP_135370196.1;Parent=gene-C9F05_RS09120;Dbxref=GenBank:WP_135370196.1;Name=WP_135370196.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000807561.1;locus_tag=C9F05_RS09120;product=SymE family type I addiction module toxin;protein_id=WP_135370196.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	5566	5964	.	-	.	ID=gene-C9F05_RS09125;Name=C9F05_RS09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09125;old_locus_tag=C9F05_09370
NZ_PYKE01000126.1	Protein Homology	CDS	5566	5964	.	-	0	ID=cds-WP_135370197.1;Parent=gene-C9F05_RS09125;Dbxref=GenBank:WP_135370197.1;Name=WP_135370197.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011095750.1;locus_tag=C9F05_RS09125;product=helix-turn-helix domain-containing protein;protein_id=WP_135370197.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	6065	9046	.	+	.	ID=gene-C9F05_RS09130;Name=C9F05_RS09130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09130;old_locus_tag=C9F05_09375
NZ_PYKE01000126.1	Protein Homology	CDS	6065	9046	.	+	0	ID=cds-WP_135370198.1;Parent=gene-C9F05_RS09130;Dbxref=GenBank:WP_135370198.1;Name=WP_135370198.1;Ontology_term=GO:0006260,GO:0003677,GO:0003899,GO:0008270;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,zinc ion binding|0008270||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014543377.1;locus_tag=C9F05_RS09130;product=CHC2 zinc finger domain-containing protein;protein_id=WP_135370198.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	9264	10385	.	+	.	ID=gene-C9F05_RS09135;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=C9F05_RS09135;old_locus_tag=C9F05_09380
NZ_PYKE01000126.1	Protein Homology	CDS	9264	10385	.	+	0	ID=cds-WP_135370199.1;Parent=gene-C9F05_RS09135;Dbxref=GenBank:WP_135370199.1;Name=WP_135370199.1;gbkey=CDS;gene=xerC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570254.1;locus_tag=C9F05_RS09135;product=site-specific tyrosine recombinase XerC;protein_id=WP_135370199.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	pseudogene	11545	11632	.	+	.	ID=gene-C9F05_RS24130;Name=C9F05_RS24130;end_range=11632,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24130;partial=true;pseudo=true;start_range=.,11545
NZ_PYKE01000126.1	Protein Homology	CDS	11545	11632	.	+	0	ID=cds-C9F05_RS24130;Parent=gene-C9F05_RS24130;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=11632,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013203822.1;locus_tag=C9F05_RS24130;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,11545;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	11695	11985	.	+	.	ID=gene-C9F05_RS09140;Name=C9F05_RS09140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09140;old_locus_tag=C9F05_09385
NZ_PYKE01000126.1	Protein Homology	CDS	11695	11985	.	+	0	ID=cds-WP_255121225.1;Parent=gene-C9F05_RS09140;Dbxref=GenBank:WP_255121225.1;Name=WP_255121225.1;Ontology_term=GO:0003723,GO:0004521;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA endonuclease activity|0004521||IEA;inference=COORDINATES: protein motif:HMM:NF012755.6;locus_tag=C9F05_RS09140;product=ribonuclease domain-containing protein;protein_id=WP_255121225.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	11985	12317	.	+	.	ID=gene-C9F05_RS09145;Name=C9F05_RS09145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09145;old_locus_tag=C9F05_09390
NZ_PYKE01000126.1	Protein Homology	CDS	11985	12317	.	+	0	ID=cds-WP_135370195.1-2;Parent=gene-C9F05_RS09145;Dbxref=GenBank:WP_135370195.1;Name=WP_135370195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001750702.1;locus_tag=C9F05_RS09145;product=barstar family protein;protein_id=WP_135370195.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	12373	12702	.	-	.	ID=gene-C9F05_RS09150;Name=C9F05_RS09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09150;old_locus_tag=C9F05_09395
NZ_PYKE01000126.1	Protein Homology	CDS	12373	12702	.	-	0	ID=cds-WP_135370196.1-2;Parent=gene-C9F05_RS09150;Dbxref=GenBank:WP_135370196.1;Name=WP_135370196.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000807561.1;locus_tag=C9F05_RS09150;product=SymE family type I addiction module toxin;protein_id=WP_135370196.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	12776	13174	.	-	.	ID=gene-C9F05_RS09155;Name=C9F05_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09155;old_locus_tag=C9F05_09400
NZ_PYKE01000126.1	Protein Homology	CDS	12776	13174	.	-	0	ID=cds-WP_135370197.1-2;Parent=gene-C9F05_RS09155;Dbxref=GenBank:WP_135370197.1;Name=WP_135370197.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011095750.1;locus_tag=C9F05_RS09155;product=helix-turn-helix domain-containing protein;protein_id=WP_135370197.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	13275	16256	.	+	.	ID=gene-C9F05_RS09160;Name=C9F05_RS09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09160;old_locus_tag=C9F05_09405
NZ_PYKE01000126.1	Protein Homology	CDS	13275	16256	.	+	0	ID=cds-WP_135370198.1-2;Parent=gene-C9F05_RS09160;Dbxref=GenBank:WP_135370198.1;Name=WP_135370198.1;Ontology_term=GO:0006260,GO:0003677,GO:0003899,GO:0008270;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,zinc ion binding|0008270||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014543377.1;locus_tag=C9F05_RS09160;product=CHC2 zinc finger domain-containing protein;protein_id=WP_135370198.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	16474	17595	.	+	.	ID=gene-C9F05_RS09165;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=C9F05_RS09165;old_locus_tag=C9F05_09410
NZ_PYKE01000126.1	Protein Homology	CDS	16474	17595	.	+	0	ID=cds-WP_135370199.1-2;Parent=gene-C9F05_RS09165;Dbxref=GenBank:WP_135370199.1;Name=WP_135370199.1;gbkey=CDS;gene=xerC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570254.1;locus_tag=C9F05_RS09165;product=site-specific tyrosine recombinase XerC;protein_id=WP_135370199.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	19756	19944	.	+	.	ID=gene-C9F05_RS09170;Name=C9F05_RS09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09170;old_locus_tag=C9F05_09415
NZ_PYKE01000126.1	Protein Homology	CDS	19756	19944	.	+	0	ID=cds-WP_039591096.1;Parent=gene-C9F05_RS09170;Dbxref=GenBank:WP_039591096.1;Name=WP_039591096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000538698.1;locus_tag=C9F05_RS09170;product=hypothetical protein;protein_id=WP_039591096.1;transl_table=11
NZ_PYKE01000126.1	RefSeq	gene	19962	21416	.	+	.	ID=gene-C9F05_RS09175;Name=C9F05_RS09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09175;old_locus_tag=C9F05_09420
NZ_PYKE01000126.1	Protein Homology	CDS	19962	21416	.	+	0	ID=cds-WP_000428191.1;Parent=gene-C9F05_RS09175;Dbxref=GenBank:WP_000428191.1;Name=WP_000428191.1;Ontology_term=GO:0009116,GO:0044209,GO:0008714;gbkey=CDS;go_function=AMP nucleosidase activity|0008714||IEA;go_process=nucleoside metabolic process|0009116||IEA,AMP salvage|0044209||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460956.1;locus_tag=C9F05_RS09175;product=AMP nucleosidase;protein_id=WP_000428191.1;transl_table=11
##sequence-region NZ_PYKE01000288.1 1 21915
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000288.1	RefSeq	region	1	21915	.	+	.	ID=NZ_PYKE01000288.1:1..21915;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000288.1	RefSeq	gene	53	439	.	+	.	ID=gene-C9F05_RS19000;Name=C9F05_RS19000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19000;old_locus_tag=C9F05_19535
NZ_PYKE01000288.1	Protein Homology	CDS	53	439	.	+	0	ID=cds-WP_135370550.1;Parent=gene-C9F05_RS19000;Dbxref=GenBank:WP_135370550.1;Name=WP_135370550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448379.1;locus_tag=C9F05_RS19000;product=hypothetical protein;protein_id=WP_135370550.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	559	873	.	-	.	ID=gene-C9F05_RS19005;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=C9F05_RS19005;old_locus_tag=C9F05_19540
NZ_PYKE01000288.1	Protein Homology	CDS	559	873	.	-	0	ID=cds-WP_000719039.1;Parent=gene-C9F05_RS19005;Dbxref=GenBank:WP_000719039.1;Name=WP_000719039.1;Ontology_term=GO:0071973,GO:0003774,GO:0009431;gbkey=CDS;gene=fliE;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460921.1;locus_tag=C9F05_RS19005;product=flagellar hook-basal body complex protein FliE;protein_id=WP_000719039.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	1090	2772	.	+	.	ID=gene-C9F05_RS19010;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=C9F05_RS19010;old_locus_tag=C9F05_19545
NZ_PYKE01000288.1	Protein Homology	CDS	1090	2772	.	+	0	ID=cds-WP_135370545.1;Parent=gene-C9F05_RS19010;Dbxref=GenBank:WP_135370545.1;Name=WP_135370545.1;Ontology_term=GO:0001539,GO:0005198,GO:0009431;gbkey=CDS;gene=fliF;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460922.1;locus_tag=C9F05_RS19010;product=flagellar basal-body MS-ring/collar protein FliF;protein_id=WP_135370545.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	2765	3760	.	+	.	ID=gene-C9F05_RS19015;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=C9F05_RS19015;old_locus_tag=C9F05_19550
NZ_PYKE01000288.1	Protein Homology	CDS	2765	3760	.	+	0	ID=cds-WP_000067735.1;Parent=gene-C9F05_RS19015;Dbxref=GenBank:WP_000067735.1;Name=WP_000067735.1;Ontology_term=GO:0006935,GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliG;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460923.1;locus_tag=C9F05_RS19015;product=flagellar motor switch protein FliG;protein_id=WP_000067735.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	3753	4460	.	+	.	ID=gene-C9F05_RS19020;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=C9F05_RS19020;old_locus_tag=C9F05_19555
NZ_PYKE01000288.1	Protein Homology	CDS	3753	4460	.	+	0	ID=cds-WP_000064158.1;Parent=gene-C9F05_RS19020;Dbxref=GenBank:WP_000064158.1;Name=WP_000064158.1;Ontology_term=GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliH;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460924.1;locus_tag=C9F05_RS19020;product=flagellar assembly protein FliH;protein_id=WP_000064158.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	4460	5830	.	+	.	ID=gene-C9F05_RS19025;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=C9F05_RS19025;old_locus_tag=C9F05_19560
NZ_PYKE01000288.1	Protein Homology	CDS	4460	5830	.	+	0	ID=cds-WP_000213257.1;Parent=gene-C9F05_RS19025;Dbxref=GenBank:WP_000213257.1;Name=WP_000213257.1;Ontology_term=GO:0044780,GO:0071973,GO:0016887;gbkey=CDS;gene=fliI;go_function=ATP hydrolysis activity|0016887||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460925.1;locus_tag=C9F05_RS19025;product=flagellar protein export ATPase FliI;protein_id=WP_000213257.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	5852	6295	.	+	.	ID=gene-C9F05_RS19030;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=C9F05_RS19030;old_locus_tag=C9F05_19565
NZ_PYKE01000288.1	Protein Homology	CDS	5852	6295	.	+	0	ID=cds-WP_000046981.1;Parent=gene-C9F05_RS19030;Dbxref=GenBank:WP_000046981.1;Name=WP_000046981.1;Ontology_term=GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliJ;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460926.1;locus_tag=C9F05_RS19030;product=flagellar export protein FliJ;protein_id=WP_000046981.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	6292	7515	.	+	.	ID=gene-C9F05_RS19035;Name=fliK;gbkey=Gene;gene=fliK;gene_biotype=protein_coding;locus_tag=C9F05_RS19035;old_locus_tag=C9F05_19570
NZ_PYKE01000288.1	Protein Homology	CDS	6292	7515	.	+	0	ID=cds-WP_039590423.1;Parent=gene-C9F05_RS19035;Dbxref=GenBank:WP_039590423.1;Name=WP_039590423.1;Ontology_term=GO:0044780,GO:0009424;gbkey=CDS;gene=fliK;go_component=bacterial-type flagellum hook|0009424||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460927.1;locus_tag=C9F05_RS19035;product=flagellar hook length control protein FliK;protein_id=WP_039590423.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	7620	8087	.	+	.	ID=gene-C9F05_RS19040;Name=fliL;gbkey=Gene;gene=fliL;gene_biotype=protein_coding;locus_tag=C9F05_RS19040;old_locus_tag=C9F05_19575
NZ_PYKE01000288.1	Protein Homology	CDS	7620	8087	.	+	0	ID=cds-WP_000132169.1;Parent=gene-C9F05_RS19040;Dbxref=GenBank:WP_000132169.1;Name=WP_000132169.1;Ontology_term=GO:0006935,GO:0071973,GO:0009425;gbkey=CDS;gene=fliL;go_component=bacterial-type flagellum basal body|0009425||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460928.1;locus_tag=C9F05_RS19040;product=flagellar basal body-associated protein FliL;protein_id=WP_000132169.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	8092	9096	.	+	.	ID=gene-C9F05_RS19045;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=C9F05_RS19045;old_locus_tag=C9F05_19580
NZ_PYKE01000288.1	Protein Homology	CDS	8092	9096	.	+	0	ID=cds-WP_000502811.1;Parent=gene-C9F05_RS19045;Dbxref=GenBank:WP_000502811.1;Name=WP_000502811.1;Ontology_term=GO:0001539,GO:0009288;gbkey=CDS;gene=fliM;go_component=bacterial-type flagellum|0009288||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127760.1;locus_tag=C9F05_RS19045;product=flagellar motor switch protein FliM;protein_id=WP_000502811.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	9093	9506	.	+	.	ID=gene-C9F05_RS19050;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=C9F05_RS19050;old_locus_tag=C9F05_19585
NZ_PYKE01000288.1	Protein Homology	CDS	9093	9506	.	+	0	ID=cds-WP_001282111.1;Parent=gene-C9F05_RS19050;Dbxref=GenBank:WP_001282111.1;Name=WP_001282111.1;Ontology_term=GO:0001539,GO:0003774,GO:0009288,GO:0016020;gbkey=CDS;gene=fliN;go_component=bacterial-type flagellum|0009288||IEA,membrane|0016020||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460930.1;locus_tag=C9F05_RS19050;product=flagellar motor switch protein FliN;protein_id=WP_001282111.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	9506	9883	.	+	.	ID=gene-C9F05_RS19055;Name=fliO;gbkey=Gene;gene=fliO;gene_biotype=protein_coding;locus_tag=C9F05_RS19055;old_locus_tag=C9F05_19590
NZ_PYKE01000288.1	Protein Homology	CDS	9506	9883	.	+	0	ID=cds-WP_000978276.1;Parent=gene-C9F05_RS19055;Dbxref=GenBank:WP_000978276.1;Name=WP_000978276.1;Ontology_term=GO:0044781,GO:0016020;gbkey=CDS;gene=fliO;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460931.3;locus_tag=C9F05_RS19055;product=flagellar biosynthetic protein FliO;protein_id=WP_000978276.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	9883	10620	.	+	.	ID=gene-C9F05_RS19060;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=C9F05_RS19060;old_locus_tag=C9F05_19595
NZ_PYKE01000288.1	Protein Homology	CDS	9883	10620	.	+	0	ID=cds-WP_001253414.1;Parent=gene-C9F05_RS19060;Dbxref=GenBank:WP_001253414.1;Name=WP_001253414.1;Note=The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly.;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;gene=fliP;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460932.1;locus_tag=C9F05_RS19060;product=flagellar type III secretion system pore protein FliP;protein_id=WP_001253414.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	10630	10899	.	+	.	ID=gene-C9F05_RS19065;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=C9F05_RS19065;old_locus_tag=C9F05_19600
NZ_PYKE01000288.1	Protein Homology	CDS	10630	10899	.	+	0	ID=cds-WP_000187355.1;Parent=gene-C9F05_RS19065;Dbxref=GenBank:WP_000187355.1;Name=WP_000187355.1;Ontology_term=GO:0044780,GO:0016020;gbkey=CDS;gene=fliQ;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013365797.1;locus_tag=C9F05_RS19065;product=flagellar biosynthesis protein FliQ;protein_id=WP_000187355.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	10908	11702	.	+	.	ID=gene-C9F05_RS19070;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=C9F05_RS19070;old_locus_tag=C9F05_19605
NZ_PYKE01000288.1	Protein Homology	CDS	10908	11702	.	+	0	ID=cds-WP_000616953.1;Parent=gene-C9F05_RS19070;Dbxref=GenBank:WP_000616953.1;Name=WP_000616953.1;Ontology_term=GO:0006605,GO:0044780,GO:0016020;gbkey=CDS;gene=fliR;go_component=membrane|0016020||IEA;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460934.1;locus_tag=C9F05_RS19070;product=flagellar biosynthetic protein FliR;protein_id=WP_000616953.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	11984	12607	.	+	.	ID=gene-C9F05_RS19075;Name=rcsA;gbkey=Gene;gene=rcsA;gene_biotype=protein_coding;locus_tag=C9F05_RS19075;old_locus_tag=C9F05_19610
NZ_PYKE01000288.1	Protein Homology	CDS	11984	12607	.	+	0	ID=cds-WP_135370546.1;Parent=gene-C9F05_RS19075;Dbxref=GenBank:WP_135370546.1;Name=WP_135370546.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rcsA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460935.1;locus_tag=C9F05_RS19075;product=transcriptional regulator RcsA;protein_id=WP_135370546.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	12646	12840	.	-	.	ID=gene-C9F05_RS19080;Name=dsrB;gbkey=Gene;gene=dsrB;gene_biotype=protein_coding;locus_tag=C9F05_RS19080;old_locus_tag=C9F05_19615
NZ_PYKE01000288.1	Protein Homology	CDS	12646	12840	.	-	0	ID=cds-WP_000867218.1;Parent=gene-C9F05_RS19080;Dbxref=GenBank:WP_000867218.1;Name=WP_000867218.1;gbkey=CDS;gene=dsrB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001736680.1;locus_tag=C9F05_RS19080;product=protein DsrB;protein_id=WP_000867218.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	12969	13196	.	+	.	ID=gene-C9F05_RS19085;Name=yodD;gbkey=Gene;gene=yodD;gene_biotype=protein_coding;locus_tag=C9F05_RS19085;old_locus_tag=C9F05_19620
NZ_PYKE01000288.1	Protein Homology	CDS	12969	13196	.	+	0	ID=cds-WP_000844798.1;Parent=gene-C9F05_RS19085;Dbxref=GenBank:WP_000844798.1;Name=WP_000844798.1;gbkey=CDS;gene=yodD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460936.1;locus_tag=C9F05_RS19085;product=YodD family peroxide/acid resistance protein;protein_id=WP_000844798.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	13506	14321	.	+	.	ID=gene-C9F05_RS19090;Name=C9F05_RS19090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19090;old_locus_tag=C9F05_19625
NZ_PYKE01000288.1	Protein Homology	CDS	13506	14321	.	+	0	ID=cds-WP_135370547.1;Parent=gene-C9F05_RS19090;Dbxref=GenBank:WP_135370547.1;Name=WP_135370547.1;Ontology_term=GO:0051479,GO:0050531;gbkey=CDS;go_function=mannosyl-3-phosphoglycerate phosphatase activity|0050531||IEA;go_process=mannosylglycerate biosynthetic process|0051479||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460937.1;locus_tag=C9F05_RS19090;product=mannosyl-3-phosphoglycerate phosphatase-related protein;protein_id=WP_135370547.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	14300	16012	.	-	.	ID=gene-C9F05_RS19095;Name=dgcQ;gbkey=Gene;gene=dgcQ;gene_biotype=protein_coding;locus_tag=C9F05_RS19095;old_locus_tag=C9F05_19630
NZ_PYKE01000288.1	Protein Homology	CDS	14300	16012	.	-	0	ID=cds-WP_023221082.1;Parent=gene-C9F05_RS19095;Dbxref=GenBank:WP_023221082.1;Name=WP_023221082.1;gbkey=CDS;gene=dgcQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460938.1;locus_tag=C9F05_RS19095;product=cellulose biosynthesis regulator diguanylate cyclase DgcQ;protein_id=WP_023221082.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	16177	16362	.	-	.	ID=gene-C9F05_RS19100;Name=C9F05_RS19100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19100;old_locus_tag=C9F05_19635
NZ_PYKE01000288.1	Protein Homology	CDS	16177	16362	.	-	0	ID=cds-WP_001521741.1;Parent=gene-C9F05_RS19100;Dbxref=GenBank:WP_001521741.1;Name=WP_001521741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001549490.1;locus_tag=C9F05_RS19100;product=YodC family protein;protein_id=WP_001521741.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	16439	17356	.	-	.	ID=gene-C9F05_RS19105;Name=C9F05_RS19105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19105;old_locus_tag=C9F05_19640
NZ_PYKE01000288.1	Protein Homology	CDS	16439	17356	.	-	0	ID=cds-WP_085920526.1;Parent=gene-C9F05_RS19105;Dbxref=GenBank:WP_085920526.1;Name=WP_085920526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310723.1;locus_tag=C9F05_RS19105;product=DUF808 domain-containing protein;protein_id=WP_085920526.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	17526	18446	.	+	.	ID=gene-C9F05_RS19110;Name=yedA;gbkey=Gene;gene=yedA;gene_biotype=protein_coding;locus_tag=C9F05_RS19110;old_locus_tag=C9F05_19645
NZ_PYKE01000288.1	Protein Homology	CDS	17526	18446	.	+	0	ID=cds-WP_135370548.1;Parent=gene-C9F05_RS19110;Dbxref=GenBank:WP_135370548.1;Name=WP_135370548.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yedA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460941.1;locus_tag=C9F05_RS19110;product=drug/metabolite exporter YedA;protein_id=WP_135370548.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	18435	18905	.	-	.	ID=gene-C9F05_RS19115;Name=C9F05_RS19115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19115;old_locus_tag=C9F05_19650
NZ_PYKE01000288.1	Protein Homology	CDS	18435	18905	.	-	0	ID=cds-WP_000785978.1;Parent=gene-C9F05_RS19115;Dbxref=GenBank:WP_000785978.1;Name=WP_000785978.1;Ontology_term=GO:0006298,GO:0004519;gbkey=CDS;go_function=endonuclease activity|0004519||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460942.1;locus_tag=C9F05_RS19115;product=very short patch repair endonuclease;protein_id=WP_000785978.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	18886	20316	.	-	.	ID=gene-C9F05_RS19120;Name=C9F05_RS19120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19120;old_locus_tag=C9F05_19655
NZ_PYKE01000288.1	Protein Homology	CDS	18886	20316	.	-	0	ID=cds-WP_001157305.1;Parent=gene-C9F05_RS19120;Dbxref=GenBank:WP_001157305.1;Name=WP_001157305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460943.1;locus_tag=C9F05_RS19120;product=DNA cytosine methyltransferase;protein_id=WP_001157305.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	20390	21085	.	-	.	ID=gene-C9F05_RS19125;Name=C9F05_RS19125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19125;old_locus_tag=C9F05_19660
NZ_PYKE01000288.1	Protein Homology	CDS	20390	21085	.	-	0	ID=cds-WP_135370549.1;Parent=gene-C9F05_RS19125;Dbxref=GenBank:WP_135370549.1;Name=WP_135370549.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460944.1;locus_tag=C9F05_RS19125;product=phosphohydrolase;protein_id=WP_135370549.1;transl_table=11
NZ_PYKE01000288.1	RefSeq	gene	21165	21476	.	-	.	ID=gene-C9F05_RS19130;Name=drpB;gbkey=Gene;gene=drpB;gene_biotype=protein_coding;locus_tag=C9F05_RS19130;old_locus_tag=C9F05_19665
NZ_PYKE01000288.1	Protein Homology	CDS	21165	21476	.	-	0	ID=cds-WP_072202292.1;Parent=gene-C9F05_RS19130;Dbxref=GenBank:WP_072202292.1;Name=WP_072202292.1;Ontology_term=GO:0051301;gbkey=CDS;gene=drpB;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460945.1;locus_tag=C9F05_RS19130;product=cell division protein DrpB;protein_id=WP_072202292.1;transl_table=11
##sequence-region NZ_PYKE01000345.1 1 1459
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000345.1	RefSeq	region	1	1459	.	+	.	ID=NZ_PYKE01000345.1:1..1459;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000345.1	RefSeq	pseudogene	162	1297	.	+	.	ID=gene-C9F05_RS23495;Name=C9F05_RS23495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23495;old_locus_tag=C9F05_24090;pseudo=true
NZ_PYKE01000345.1	Protein Homology	CDS	162	1297	.	+	0	ID=cds-C9F05_RS23495;Parent=gene-C9F05_RS23495;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=C9F05_RS23495;product=ISAs1 family transposase;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000270.1 1 21416
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000270.1	RefSeq	region	1	21416	.	+	.	ID=NZ_PYKE01000270.1:1..21416;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000270.1	RefSeq	gene	357	1277	.	+	.	ID=gene-C9F05_RS17960;Name=lpxP;gbkey=Gene;gene=lpxP;gene_biotype=protein_coding;locus_tag=C9F05_RS17960;old_locus_tag=C9F05_18470
NZ_PYKE01000270.1	Protein Homology	CDS	357	1277	.	+	0	ID=cds-WP_000484428.1;Parent=gene-C9F05_RS17960;Dbxref=GenBank:WP_000484428.1;Name=WP_000484428.1;Ontology_term=GO:0009409,GO:0036104,GO:0008951,GO:0016020;gbkey=CDS;gene=lpxP;go_component=membrane|0016020||IEA;go_function=palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity|0008951||IEA;go_process=response to cold|0009409||IEA,Kdo2-lipid A biosynthetic process|0036104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461342.1;locus_tag=C9F05_RS17960;product=kdo(2)-lipid IV(A) palmitoleoyltransferase;protein_id=WP_000484428.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	1679	1750	.	+	.	ID=gene-C9F05_RS17965;Name=ypdK;gbkey=Gene;gene=ypdK;gene_biotype=protein_coding;locus_tag=C9F05_RS17965;old_locus_tag=C9F05_18475
NZ_PYKE01000270.1	Protein Homology	CDS	1679	1750	.	+	0	ID=cds-WP_010723117.1;Parent=gene-C9F05_RS17965;Dbxref=GenBank:WP_010723117.1;Name=WP_010723117.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ypdK;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_077777854.1;locus_tag=C9F05_RS17965;product=membrane protein YpdK;protein_id=WP_010723117.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	1800	3038	.	-	.	ID=gene-C9F05_RS17970;Name=alaC;gbkey=Gene;gene=alaC;gene_biotype=protein_coding;locus_tag=C9F05_RS17970;old_locus_tag=C9F05_18480
NZ_PYKE01000270.1	Protein Homology	CDS	1800	3038	.	-	0	ID=cds-WP_000763118.1;Parent=gene-C9F05_RS17970;Dbxref=GenBank:WP_000763118.1;Name=WP_000763118.1;Ontology_term=GO:0009058,GO:0003824,GO:0030170;gbkey=CDS;gene=alaC;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461343.1;locus_tag=C9F05_RS17970;product=alanine transaminase;protein_id=WP_000763118.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	3761	4726	.	-	.	ID=gene-C9F05_RS17975;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=C9F05_RS17975;old_locus_tag=C9F05_18490
NZ_PYKE01000270.1	Protein Homology	CDS	3761	4726	.	-	0	ID=cds-WP_000170376.1;Parent=gene-C9F05_RS17975;Dbxref=GenBank:WP_000170376.1;Name=WP_000170376.1;Ontology_term=GO:0006096,GO:0051156,GO:0004340,GO:0005524,GO:0005536;gbkey=CDS;gene=glk;go_function=glucokinase activity|0004340||IEA,ATP binding|0005524||IEA,D-glucose binding|0005536||IEA;go_process=glycolytic process|0006096||IEA,glucose 6-phosphate metabolic process|0051156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461344.1;locus_tag=C9F05_RS17975;product=glucokinase;protein_id=WP_000170376.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	4930	6165	.	+	.	ID=gene-C9F05_RS17980;Name=C9F05_RS17980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17980;old_locus_tag=C9F05_18495
NZ_PYKE01000270.1	Protein Homology	CDS	4930	6165	.	+	0	ID=cds-WP_000468920.1;Parent=gene-C9F05_RS17980;Dbxref=GenBank:WP_000468920.1;Name=WP_000468920.1;Ontology_term=GO:0005247;gbkey=CDS;go_function=voltage-gated chloride channel activity|0005247||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461345.1;locus_tag=C9F05_RS17980;product=ion channel protein;protein_id=WP_000468920.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	6185	7837	.	-	.	ID=gene-C9F05_RS17985;Name=C9F05_RS17985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS17985;old_locus_tag=C9F05_18500
NZ_PYKE01000270.1	Protein Homology	CDS	6185	7837	.	-	0	ID=cds-WP_135370514.1;Parent=gene-C9F05_RS17985;Dbxref=GenBank:WP_135370514.1;Name=WP_135370514.1;Ontology_term=GO:0016831,GO:0030976,GO:0046872;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA,thiamine pyrophosphate binding|0030976||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461346.1;locus_tag=C9F05_RS17985;product=alpha-keto acid decarboxylase family protein;protein_id=WP_135370514.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	8017	9015	.	+	.	ID=gene-C9F05_RS17990;Name=mgrA;gbkey=Gene;gene=mgrA;gene_biotype=protein_coding;locus_tag=C9F05_RS17990;old_locus_tag=C9F05_18510
NZ_PYKE01000270.1	Protein Homology	CDS	8017	9015	.	+	0	ID=cds-WP_000640285.1;Parent=gene-C9F05_RS17990;Dbxref=GenBank:WP_000640285.1;Name=WP_000640285.1;Ontology_term=GO:0047834;gbkey=CDS;gene=mgrA;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461347.1;locus_tag=C9F05_RS17990;product=L-glyceraldehyde 3-phosphate reductase;protein_id=WP_000640285.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	9129	9455	.	+	.	ID=gene-C9F05_RS17995;Name=ypeC;gbkey=Gene;gene=ypeC;gene_biotype=protein_coding;locus_tag=C9F05_RS17995;old_locus_tag=C9F05_18515
NZ_PYKE01000270.1	Protein Homology	CDS	9129	9455	.	+	0	ID=cds-WP_000490091.1;Parent=gene-C9F05_RS17995;Dbxref=GenBank:WP_000490091.1;Name=WP_000490091.1;gbkey=CDS;gene=ypeC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461348.1;locus_tag=C9F05_RS17995;product=DUF2502 domain-containing protein YpeC;protein_id=WP_000490091.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	9516	10757	.	-	.	ID=gene-C9F05_RS18000;Name=C9F05_RS18000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18000;old_locus_tag=C9F05_18520
NZ_PYKE01000270.1	Protein Homology	CDS	9516	10757	.	-	0	ID=cds-WP_000131735.1;Parent=gene-C9F05_RS18000;Dbxref=GenBank:WP_000131735.1;Name=WP_000131735.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461349.1;locus_tag=C9F05_RS18000;product=Nramp family divalent metal transporter;protein_id=WP_000131735.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	10750	10827	.	-	.	ID=gene-C9F05_RS24195;Name=C9F05_RS24195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24195
NZ_PYKE01000270.1	Protein Homology	CDS	10750	10827	.	-	0	ID=cds-WP_418144572.1;Parent=gene-C9F05_RS24195;Dbxref=GenBank:WP_418144572.1;Name=WP_418144572.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049535.1;locus_tag=C9F05_RS24195;product=hypothetical protein;protein_id=WP_418144572.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	11100	12302	.	+	.	ID=gene-C9F05_RS18005;Name=nupC;gbkey=Gene;gene=nupC;gene_biotype=protein_coding;locus_tag=C9F05_RS18005;old_locus_tag=C9F05_18525
NZ_PYKE01000270.1	Protein Homology	CDS	11100	12302	.	+	0	ID=cds-WP_000376343.1;Parent=gene-C9F05_RS18005;Dbxref=GenBank:WP_000376343.1;Name=WP_000376343.1;gbkey=CDS;gene=nupC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461350.1;locus_tag=C9F05_RS18005;product=nucleoside permease NupC;protein_id=WP_000376343.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	12355	14544	.	-	.	ID=gene-C9F05_RS18010;Name=C9F05_RS18010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18010;old_locus_tag=C9F05_18530
NZ_PYKE01000270.1	Protein Homology	CDS	12355	14544	.	-	0	ID=cds-WP_135370515.1;Parent=gene-C9F05_RS18010;Dbxref=GenBank:WP_135370515.1;Name=WP_135370515.1;Ontology_term=GO:0000160,GO:0007165,GO:0071111;gbkey=CDS;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461351.1;locus_tag=C9F05_RS18010;product=EAL domain-containing protein;protein_id=WP_135370515.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	14736	14811	.	-	.	ID=gene-C9F05_RS18015;Name=C9F05_RS18015;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS18015;old_locus_tag=C9F05_18535
NZ_PYKE01000270.1	tRNAscan-SE	tRNA	14736	14811	.	-	.	ID=rna-C9F05_RS18015;Parent=gene-C9F05_RS18015;anticodon=(pos:complement(14776..14778));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS18015;product=tRNA-Ala
NZ_PYKE01000270.1	tRNAscan-SE	exon	14736	14811	.	-	.	ID=exon-C9F05_RS18015-1;Parent=rna-C9F05_RS18015;anticodon=(pos:complement(14776..14778));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS18015;product=tRNA-Ala
NZ_PYKE01000270.1	RefSeq	gene	15033	15395	.	+	.	ID=gene-C9F05_RS18020;Name=C9F05_RS18020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18020;old_locus_tag=C9F05_18545
NZ_PYKE01000270.1	Protein Homology	CDS	15033	15395	.	+	0	ID=cds-WP_000472034.1;Parent=gene-C9F05_RS18020;Dbxref=GenBank:WP_000472034.1;Name=WP_000472034.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461352.1;locus_tag=C9F05_RS18020;product=MerR family transcriptional regulator;protein_id=WP_000472034.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	15397	15789	.	+	.	ID=gene-C9F05_RS18025;Name=C9F05_RS18025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18025;old_locus_tag=C9F05_18550
NZ_PYKE01000270.1	Protein Homology	CDS	15397	15789	.	+	0	ID=cds-WP_000826514.1;Parent=gene-C9F05_RS18025;Dbxref=GenBank:WP_000826514.1;Name=WP_000826514.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461353.1;locus_tag=C9F05_RS18025;product=MerR family transcriptional regulator;protein_id=WP_000826514.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	15843	17258	.	-	.	ID=gene-C9F05_RS18030;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=C9F05_RS18030;old_locus_tag=C9F05_18555
NZ_PYKE01000270.1	Protein Homology	CDS	15843	17258	.	-	0	ID=cds-WP_000695623.1;Parent=gene-C9F05_RS18030;Dbxref=GenBank:WP_000695623.1;Name=WP_000695623.1;Ontology_term=GO:0006424,GO:0000166,GO:0004818,GO:0005524;gbkey=CDS;gene=gltX;go_function=nucleotide binding|0000166||IEA,glutamate-tRNA ligase activity|0004818||IEA,ATP binding|0005524||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461354.1;locus_tag=C9F05_RS18030;product=glutamate--tRNA ligase;protein_id=WP_000695623.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	17517	17592	.	+	.	ID=gene-C9F05_RS18035;Name=C9F05_RS18035;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS18035;old_locus_tag=C9F05_18560
NZ_PYKE01000270.1	tRNAscan-SE	tRNA	17517	17592	.	+	.	ID=rna-C9F05_RS18035;Parent=gene-C9F05_RS18035;anticodon=(pos:17550..17552);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS18035;product=tRNA-Val
NZ_PYKE01000270.1	tRNAscan-SE	exon	17517	17592	.	+	.	ID=exon-C9F05_RS18035-1;Parent=rna-C9F05_RS18035;anticodon=(pos:17550..17552);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS18035;product=tRNA-Val
NZ_PYKE01000270.1	RefSeq	gene	17596	17671	.	+	.	ID=gene-C9F05_RS18040;Name=C9F05_RS18040;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS18040;old_locus_tag=C9F05_18565
NZ_PYKE01000270.1	tRNAscan-SE	tRNA	17596	17671	.	+	.	ID=rna-C9F05_RS18040;Parent=gene-C9F05_RS18040;anticodon=(pos:17629..17631);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS18040;product=tRNA-Lys
NZ_PYKE01000270.1	tRNAscan-SE	exon	17596	17671	.	+	.	ID=exon-C9F05_RS18040-1;Parent=rna-C9F05_RS18040;anticodon=(pos:17629..17631);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS18040;product=tRNA-Lys
NZ_PYKE01000270.1	RefSeq	gene	17835	18719	.	-	.	ID=gene-C9F05_RS18045;Name=C9F05_RS18045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18045;old_locus_tag=C9F05_18570
NZ_PYKE01000270.1	Protein Homology	CDS	17835	18719	.	-	0	ID=cds-WP_000438892.1;Parent=gene-C9F05_RS18045;Dbxref=GenBank:WP_000438892.1;Name=WP_000438892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461355.1;locus_tag=C9F05_RS18045;product=LysR family transcriptional regulator;protein_id=WP_000438892.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	18771	18929	.	-	.	ID=gene-C9F05_RS18050;Name=C9F05_RS18050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18050;old_locus_tag=C9F05_18575
NZ_PYKE01000270.1	Protein Homology	CDS	18771	18929	.	-	0	ID=cds-WP_000658727.1;Parent=gene-C9F05_RS18050;Dbxref=GenBank:WP_000658727.1;Name=WP_000658727.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000658729.1;locus_tag=C9F05_RS18050;product=XapX domain-containing protein;protein_id=WP_000658727.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	18988	20244	.	-	.	ID=gene-C9F05_RS18055;Name=C9F05_RS18055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18055;old_locus_tag=C9F05_18580
NZ_PYKE01000270.1	Protein Homology	CDS	18988	20244	.	-	0	ID=cds-WP_000513241.1;Parent=gene-C9F05_RS18055;Dbxref=GenBank:WP_000513241.1;Name=WP_000513241.1;Ontology_term=GO:0015858,GO:0055085,GO:0015506,GO:0022857;gbkey=CDS;go_function=nucleoside:proton symporter activity|0015506||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleoside transport|0015858||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461356.1;locus_tag=C9F05_RS18055;product=nucleoside permease;protein_id=WP_000513241.1;transl_table=11
NZ_PYKE01000270.1	RefSeq	gene	20299	21132	.	-	.	ID=gene-C9F05_RS18060;Name=xapA;gbkey=Gene;gene=xapA;gene_biotype=protein_coding;locus_tag=C9F05_RS18060;old_locus_tag=C9F05_18585
NZ_PYKE01000270.1	Protein Homology	CDS	20299	21132	.	-	0	ID=cds-WP_023181788.1;Parent=gene-C9F05_RS18060;Dbxref=GenBank:WP_023181788.1;Name=WP_023181788.1;Ontology_term=GO:0055086,GO:0004731,GO:0005737;gbkey=CDS;gene=xapA;go_component=cytoplasm|0005737||IEA;go_function=purine-nucleoside phosphorylase activity|0004731||IEA;go_process=nucleobase-containing small molecule metabolic process|0055086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448816.1;locus_tag=C9F05_RS18060;product=xanthosine phosphorylase;protein_id=WP_023181788.1;transl_table=11
##sequence-region NZ_PYKE01000325.1 1 1400
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000325.1	RefSeq	region	1	1400	.	+	.	ID=NZ_PYKE01000325.1:1..1400;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000325.1	RefSeq	gene	83	238	.	+	.	ID=gene-C9F05_RS22200;Name=C9F05_RS22200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22200;old_locus_tag=C9F05_22785
NZ_PYKE01000325.1	Protein Homology	CDS	83	238	.	+	0	ID=cds-WP_079961102.1;Parent=gene-C9F05_RS22200;Dbxref=GenBank:WP_079961102.1;Name=WP_079961102.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001674119.1;locus_tag=C9F05_RS22200;product=DUF1391 family protein;protein_id=WP_079961102.1;transl_table=11
NZ_PYKE01000325.1	RefSeq	gene	450	725	.	+	.	ID=gene-C9F05_RS22205;Name=C9F05_RS22205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22205;old_locus_tag=C9F05_22790
NZ_PYKE01000325.1	Protein Homology	CDS	450	725	.	+	0	ID=cds-WP_000103933.1;Parent=gene-C9F05_RS22205;Dbxref=GenBank:WP_000103933.1;Name=WP_000103933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000103933.1;locus_tag=C9F05_RS22205;product=hypothetical protein;protein_id=WP_000103933.1;transl_table=11
NZ_PYKE01000325.1	RefSeq	gene	729	935	.	+	.	ID=gene-C9F05_RS22210;Name=C9F05_RS22210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22210;old_locus_tag=C9F05_22795
NZ_PYKE01000325.1	Protein Homology	CDS	729	935	.	+	0	ID=cds-WP_000682660.1;Parent=gene-C9F05_RS22210;Dbxref=GenBank:WP_000682660.1;Name=WP_000682660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000682660.1;locus_tag=C9F05_RS22210;product=cell division inhibitor protein;protein_id=WP_000682660.1;transl_table=11
NZ_PYKE01000325.1	RefSeq	gene	1011	1334	.	+	.	ID=gene-C9F05_RS22215;Name=C9F05_RS22215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22215;old_locus_tag=C9F05_22800
NZ_PYKE01000325.1	Protein Homology	CDS	1011	1334	.	+	0	ID=cds-WP_135370641.1;Parent=gene-C9F05_RS22215;Dbxref=GenBank:WP_135370641.1;Name=WP_135370641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000799630.1;locus_tag=C9F05_RS22215;product=hypothetical protein;protein_id=WP_135370641.1;transl_table=11
##sequence-region NZ_PYKE01000139.1 1 1361
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000139.1	RefSeq	region	1	1361	.	+	.	ID=NZ_PYKE01000139.1:1..1361;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000139.1	RefSeq	gene	121	996	.	-	.	ID=gene-C9F05_RS10185;Name=C9F05_RS10185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10185;old_locus_tag=C9F05_10445
NZ_PYKE01000139.1	Protein Homology	CDS	121	996	.	-	0	ID=cds-WP_023182023.1;Parent=gene-C9F05_RS10185;Dbxref=GenBank:WP_023182023.1;Name=WP_023182023.1;Ontology_term=GO:0007165,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: protein motif:HMM:NF025056.6;locus_tag=C9F05_RS10185;product=toll/interleukin-1 receptor domain-containing protein;protein_id=WP_023182023.1;transl_table=11
##sequence-region NZ_PYKE01000277.1 1 21229
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000277.1	RefSeq	region	1	21229	.	+	.	ID=NZ_PYKE01000277.1:1..21229;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000277.1	RefSeq	gene	172	573	.	+	.	ID=gene-C9F05_RS18360;Name=spiC;gbkey=Gene;gene=spiC;gene_biotype=protein_coding;locus_tag=C9F05_RS18360;old_locus_tag=C9F05_18890
NZ_PYKE01000277.1	Protein Homology	CDS	172	573	.	+	0	ID=cds-WP_001588845.1;Parent=gene-C9F05_RS18360;Dbxref=GenBank:WP_001588845.1;Name=WP_001588845.1;gbkey=CDS;gene=spiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460358.1;locus_tag=C9F05_RS18360;product=SPI-2 type III secretion system protein SpiC;protein_id=WP_001588845.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	575	2068	.	+	.	ID=gene-C9F05_RS18365;Name=spiA;gbkey=Gene;gene=spiA;gene_biotype=protein_coding;locus_tag=C9F05_RS18365;old_locus_tag=C9F05_18895
NZ_PYKE01000277.1	Protein Homology	CDS	575	2068	.	+	0	ID=cds-WP_000261287.1;Parent=gene-C9F05_RS18365;Dbxref=GenBank:WP_000261287.1;Name=WP_000261287.1;gbkey=CDS;gene=spiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460359.1;locus_tag=C9F05_RS18365;product=SPI-2 type III secretion system protein SpiA;protein_id=WP_000261287.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	2049	3260	.	+	.	ID=gene-C9F05_RS18370;Name=ssaD;gbkey=Gene;gene=ssaD;gene_biotype=protein_coding;locus_tag=C9F05_RS18370;old_locus_tag=C9F05_18900
NZ_PYKE01000277.1	Protein Homology	CDS	2049	3260	.	+	0	ID=cds-WP_080110796.1;Parent=gene-C9F05_RS18370;Dbxref=GenBank:WP_080110796.1;Name=WP_080110796.1;gbkey=CDS;gene=ssaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460360.1;locus_tag=C9F05_RS18370;product=SctD family type III secretion system inner membrane ring subunit SsaD;protein_id=WP_080110796.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	3268	3510	.	+	.	ID=gene-C9F05_RS18375;Name=ssaE;gbkey=Gene;gene=ssaE;gene_biotype=protein_coding;locus_tag=C9F05_RS18375;old_locus_tag=C9F05_18905
NZ_PYKE01000277.1	Protein Homology	CDS	3268	3510	.	+	0	ID=cds-WP_000210204.1;Parent=gene-C9F05_RS18375;Dbxref=GenBank:WP_000210204.1;Name=WP_000210204.1;gbkey=CDS;gene=ssaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460361.1;locus_tag=C9F05_RS18375;product=YscE family type III secretion system co-chaperone SsaE;protein_id=WP_000210204.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	3774	4100	.	+	.	ID=gene-C9F05_RS18380;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=C9F05_RS18380;old_locus_tag=C9F05_18910
NZ_PYKE01000277.1	Protein Homology	CDS	3774	4100	.	+	0	ID=cds-WP_000972855.1;Parent=gene-C9F05_RS18380;Dbxref=GenBank:WP_000972855.1;Name=WP_000972855.1;gbkey=CDS;gene=sseA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460362.1;locus_tag=C9F05_RS18380;product=SPI-2 type III secretion system chaperone SseA;protein_id=WP_000972855.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	4107	4697	.	+	.	ID=gene-C9F05_RS18385;Name=sseB;gbkey=Gene;gene=sseB;gene_biotype=protein_coding;locus_tag=C9F05_RS18385;old_locus_tag=C9F05_18915
NZ_PYKE01000277.1	Protein Homology	CDS	4107	4697	.	+	0	ID=cds-WP_000094419.1;Parent=gene-C9F05_RS18385;Dbxref=GenBank:WP_000094419.1;Name=WP_000094419.1;gbkey=CDS;gene=sseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460363.1;locus_tag=C9F05_RS18385;product=SPI-2 type III secretion system translocon protein SseB;protein_id=WP_000094419.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	4694	5167	.	+	.	ID=gene-C9F05_RS18390;Name=sscA;gbkey=Gene;gene=sscA;gene_biotype=protein_coding;locus_tag=C9F05_RS18390;old_locus_tag=C9F05_18920
NZ_PYKE01000277.1	Protein Homology	CDS	4694	5167	.	+	0	ID=cds-WP_000711023.1;Parent=gene-C9F05_RS18390;Dbxref=GenBank:WP_000711023.1;Name=WP_000711023.1;gbkey=CDS;gene=sscA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460364.1;locus_tag=C9F05_RS18390;product=SycD/LcrH family type III secretion system chaperone SscA;protein_id=WP_000711023.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	5170	6624	.	+	.	ID=gene-C9F05_RS18395;Name=C9F05_RS18395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18395;old_locus_tag=C9F05_18925
NZ_PYKE01000277.1	Protein Homology	CDS	5170	6624	.	+	0	ID=cds-WP_135370526.1;Parent=gene-C9F05_RS18395;Dbxref=GenBank:WP_135370526.1;Name=WP_135370526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460365.1;locus_tag=C9F05_RS18395;product=type III secretion system translocon protein;protein_id=WP_135370526.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	6640	7227	.	+	.	ID=gene-C9F05_RS18400;Name=sseD;gbkey=Gene;gene=sseD;gene_biotype=protein_coding;locus_tag=C9F05_RS18400;old_locus_tag=C9F05_18930
NZ_PYKE01000277.1	Protein Homology	CDS	6640	7227	.	+	0	ID=cds-WP_135370527.1;Parent=gene-C9F05_RS18400;Dbxref=GenBank:WP_135370527.1;Name=WP_135370527.1;gbkey=CDS;gene=sseD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460366.1;locus_tag=C9F05_RS18400;product=SPI-2 type III secretion system translocon protein SseD;protein_id=WP_135370527.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	7230	7646	.	+	.	ID=gene-C9F05_RS18405;Name=sseE;gbkey=Gene;gene=sseE;gene_biotype=protein_coding;locus_tag=C9F05_RS18405;old_locus_tag=C9F05_18935
NZ_PYKE01000277.1	Protein Homology	CDS	7230	7646	.	+	0	ID=cds-WP_023209473.1;Parent=gene-C9F05_RS18405;Dbxref=GenBank:WP_023209473.1;Name=WP_023209473.1;gbkey=CDS;gene=sseE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460367.1;locus_tag=C9F05_RS18405;product=LcrR family type III secretion system chaperone SseE;protein_id=WP_023209473.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	7698	8132	.	+	.	ID=gene-C9F05_RS18410;Name=sscB;gbkey=Gene;gene=sscB;gene_biotype=protein_coding;locus_tag=C9F05_RS18410;old_locus_tag=C9F05_18940
NZ_PYKE01000277.1	Protein Homology	CDS	7698	8132	.	+	0	ID=cds-WP_000979963.1;Parent=gene-C9F05_RS18410;Dbxref=GenBank:WP_000979963.1;Name=WP_000979963.1;gbkey=CDS;gene=sscB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460368.1;locus_tag=C9F05_RS18410;product=SycD/LcrH family type III secretion system chaperone SscB;protein_id=WP_000979963.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	8148	8930	.	+	.	ID=gene-C9F05_RS18415;Name=sseF;gbkey=Gene;gene=sseF;gene_biotype=protein_coding;locus_tag=C9F05_RS18415;old_locus_tag=C9F05_18945
NZ_PYKE01000277.1	Protein Homology	CDS	8148	8930	.	+	0	ID=cds-WP_080203471.1;Parent=gene-C9F05_RS18415;Dbxref=GenBank:WP_080203471.1;Name=WP_080203471.1;gbkey=CDS;gene=sseF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460369.1;locus_tag=C9F05_RS18415;product=type III secretion systems effector SseF;protein_id=WP_080203471.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	8927	9616	.	+	.	ID=gene-C9F05_RS18420;Name=sseG;gbkey=Gene;gene=sseG;gene_biotype=protein_coding;locus_tag=C9F05_RS18420;old_locus_tag=C9F05_18950
NZ_PYKE01000277.1	Protein Homology	CDS	8927	9616	.	+	0	ID=cds-WP_000805835.1;Parent=gene-C9F05_RS18420;Dbxref=GenBank:WP_000805835.1;Name=WP_000805835.1;Note=SseG%2C from Salmonella pathogenicity island 2%2C is a type III secretion system (T3SS) effector protein.;gbkey=CDS;gene=sseG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460370.1;locus_tag=C9F05_RS18420;product=pathogenicity island 2 effector protein SseG;protein_id=WP_000805835.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	9710	9925	.	+	.	ID=gene-C9F05_RS18425;Name=ssaG;gbkey=Gene;gene=ssaG;gene_biotype=protein_coding;locus_tag=C9F05_RS18425;old_locus_tag=C9F05_18955
NZ_PYKE01000277.1	Protein Homology	CDS	9710	9925	.	+	0	ID=cds-WP_000350226.1;Parent=gene-C9F05_RS18425;Dbxref=GenBank:WP_000350226.1;Name=WP_000350226.1;gbkey=CDS;gene=ssaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460371.1;locus_tag=C9F05_RS18425;product=type III secretion system needle filament protein SsaG;protein_id=WP_000350226.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	9903	10193	.	+	.	ID=gene-C9F05_RS18430;Name=C9F05_RS18430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18430;old_locus_tag=C9F05_18960
NZ_PYKE01000277.1	Protein Homology	CDS	9903	10193	.	+	0	ID=cds-WP_000444713.1;Parent=gene-C9F05_RS18430;Dbxref=GenBank:WP_000444713.1;Name=WP_000444713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001531123.1;locus_tag=C9F05_RS18430;product=EscG/YscG/SsaH family type III secretion system needle protein co-chaperone;protein_id=WP_000444713.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	10205	10453	.	+	.	ID=gene-C9F05_RS18435;Name=ssaI;gbkey=Gene;gene=ssaI;gene_biotype=protein_coding;locus_tag=C9F05_RS18435;old_locus_tag=C9F05_18965
NZ_PYKE01000277.1	Protein Homology	CDS	10205	10453	.	+	0	ID=cds-WP_023232141.1;Parent=gene-C9F05_RS18435;Dbxref=GenBank:WP_023232141.1;Name=WP_023232141.1;gbkey=CDS;gene=ssaI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001562742.1;locus_tag=C9F05_RS18435;product=SctI family type III secretion system inner rod subunit SsaI;protein_id=WP_023232141.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	10450	11199	.	+	.	ID=gene-C9F05_RS18440;Name=ssaJ;gbkey=Gene;gene=ssaJ;gene_biotype=protein_coding;locus_tag=C9F05_RS18440;old_locus_tag=C9F05_18970
NZ_PYKE01000277.1	Protein Homology	CDS	10450	11199	.	+	0	ID=cds-WP_000862878.1;Parent=gene-C9F05_RS18440;Dbxref=GenBank:WP_000862878.1;Name=WP_000862878.1;gbkey=CDS;gene=ssaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460374.1;locus_tag=C9F05_RS18440;product=SPI-2 type III secretion system apparatus lipoprotein SsaJ;protein_id=WP_000862878.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	11217	11765	.	+	.	ID=gene-C9F05_RS18445;Name=C9F05_RS18445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS18445;old_locus_tag=C9F05_18975
NZ_PYKE01000277.1	Protein Homology	CDS	11217	11765	.	+	0	ID=cds-WP_023199466.1;Parent=gene-C9F05_RS18445;Dbxref=GenBank:WP_023199466.1;Name=WP_023199466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460375.1;locus_tag=C9F05_RS18445;product=type III secretion system domain-containing protein;protein_id=WP_023199466.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	11762	12436	.	+	.	ID=gene-C9F05_RS18450;Name=ssaK;gbkey=Gene;gene=ssaK;gene_biotype=protein_coding;locus_tag=C9F05_RS18450;old_locus_tag=C9F05_18980
NZ_PYKE01000277.1	Protein Homology	CDS	11762	12436	.	+	0	ID=cds-WP_135370528.1;Parent=gene-C9F05_RS18450;Dbxref=GenBank:WP_135370528.1;Name=WP_135370528.1;gbkey=CDS;gene=ssaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460376.1;locus_tag=C9F05_RS18450;product=SPI-2 type III secretion system apparatus protein SsaK;protein_id=WP_135370528.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	12402	13418	.	+	.	ID=gene-C9F05_RS18455;Name=ssaL;gbkey=Gene;gene=ssaL;gene_biotype=protein_coding;locus_tag=C9F05_RS18455;old_locus_tag=C9F05_18985
NZ_PYKE01000277.1	Protein Homology	CDS	12402	13418	.	+	0	ID=cds-WP_135370529.1;Parent=gene-C9F05_RS18455;Dbxref=GenBank:WP_135370529.1;Name=WP_135370529.1;gbkey=CDS;gene=ssaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460377.1;locus_tag=C9F05_RS18455;product=SPI-2 type III secretion system apparatus protein SsaL;protein_id=WP_135370529.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	13476	13844	.	+	.	ID=gene-C9F05_RS18460;Name=ssaM;gbkey=Gene;gene=ssaM;gene_biotype=protein_coding;locus_tag=C9F05_RS18460;old_locus_tag=C9F05_18990
NZ_PYKE01000277.1	Protein Homology	CDS	13476	13844	.	+	0	ID=cds-WP_000383702.1;Parent=gene-C9F05_RS18460;Dbxref=GenBank:WP_000383702.1;Name=WP_000383702.1;gbkey=CDS;gene=ssaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460378.1;locus_tag=C9F05_RS18460;product=SPI-2 type III secretion system apparatus protein SsaM;protein_id=WP_000383702.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	13829	15874	.	+	.	ID=gene-C9F05_RS18465;Name=ssaV;gbkey=Gene;gene=ssaV;gene_biotype=protein_coding;locus_tag=C9F05_RS18465;old_locus_tag=C9F05_18995
NZ_PYKE01000277.1	Protein Homology	CDS	13829	15874	.	+	0	ID=cds-WP_001258231.1;Parent=gene-C9F05_RS18465;Dbxref=GenBank:WP_001258231.1;Name=WP_001258231.1;gbkey=CDS;gene=ssaV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460379.1;locus_tag=C9F05_RS18465;product=SPI-2 type III secretion system apparatus protein SsaV;protein_id=WP_001258231.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	15864	17165	.	+	.	ID=gene-C9F05_RS18470;Name=ssaN;gbkey=Gene;gene=ssaN;gene_biotype=protein_coding;locus_tag=C9F05_RS18470;old_locus_tag=C9F05_19000
NZ_PYKE01000277.1	Protein Homology	CDS	15864	17165	.	+	0	ID=cds-WP_000787216.1;Parent=gene-C9F05_RS18470;Dbxref=GenBank:WP_000787216.1;Name=WP_000787216.1;gbkey=CDS;gene=ssaN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460380.1;locus_tag=C9F05_RS18470;product=SctN family type III secretion system ATPase SsaN;protein_id=WP_000787216.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	17168	17545	.	+	.	ID=gene-C9F05_RS18475;Name=ssaO;gbkey=Gene;gene=ssaO;gene_biotype=protein_coding;locus_tag=C9F05_RS18475;old_locus_tag=C9F05_19005
NZ_PYKE01000277.1	Protein Homology	CDS	17168	17545	.	+	0	ID=cds-WP_000449089.1;Parent=gene-C9F05_RS18475;Dbxref=GenBank:WP_000449089.1;Name=WP_000449089.1;gbkey=CDS;gene=ssaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460381.1;locus_tag=C9F05_RS18475;product=SPI-2 type III secretion system apparatus protein SsaO;protein_id=WP_000449089.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	17526	17900	.	+	.	ID=gene-C9F05_RS18480;Name=ssaP;gbkey=Gene;gene=ssaP;gene_biotype=protein_coding;locus_tag=C9F05_RS18480;old_locus_tag=C9F05_19010
NZ_PYKE01000277.1	Protein Homology	CDS	17526	17900	.	+	0	ID=cds-WP_001223305.1;Parent=gene-C9F05_RS18480;Dbxref=GenBank:WP_001223305.1;Name=WP_001223305.1;gbkey=CDS;gene=ssaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460382.1;locus_tag=C9F05_RS18480;product=SPI-2 type III secretion system apparatus protein SsaP;protein_id=WP_001223305.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	17881	18849	.	+	.	ID=gene-C9F05_RS18485;Name=ssaQ;gbkey=Gene;gene=ssaQ;gene_biotype=protein_coding;locus_tag=C9F05_RS18485;old_locus_tag=C9F05_19015
NZ_PYKE01000277.1	Protein Homology	CDS	17881	18849	.	+	0	ID=cds-WP_047606427.1;Parent=gene-C9F05_RS18485;Dbxref=GenBank:WP_047606427.1;Name=WP_047606427.1;gbkey=CDS;gene=ssaQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460383.1;locus_tag=C9F05_RS18485;product=SPI-2 type III secretion system cytoplasmic ring protein SsaQ;protein_id=WP_047606427.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	18917	19564	.	+	.	ID=gene-C9F05_RS18490;Name=ssaR;gbkey=Gene;gene=ssaR;gene_biotype=protein_coding;locus_tag=C9F05_RS18490;old_locus_tag=C9F05_19020
NZ_PYKE01000277.1	Protein Homology	CDS	18917	19564	.	+	0	ID=cds-WP_000056367.1;Parent=gene-C9F05_RS18490;Dbxref=GenBank:WP_000056367.1;Name=WP_000056367.1;gbkey=CDS;gene=ssaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460384.1;locus_tag=C9F05_RS18490;product=SPI-2 type III secretion system export apparatus protein SsaR;protein_id=WP_000056367.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	19561	19827	.	+	.	ID=gene-C9F05_RS18495;Name=ssas;gbkey=Gene;gene=ssas;gene_biotype=protein_coding;locus_tag=C9F05_RS18495;old_locus_tag=C9F05_19025
NZ_PYKE01000277.1	Protein Homology	CDS	19561	19827	.	+	0	ID=cds-WP_000999982.1;Parent=gene-C9F05_RS18495;Dbxref=GenBank:WP_000999982.1;Name=WP_000999982.1;gbkey=CDS;gene=ssas;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460385.1;locus_tag=C9F05_RS18495;product=SPI-2 type III secretion system apparatus protein SsaS;protein_id=WP_000999982.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	gene	19828	20607	.	+	.	ID=gene-C9F05_RS18500;Name=ssaT;gbkey=Gene;gene=ssaT;gene_biotype=protein_coding;locus_tag=C9F05_RS18500;old_locus_tag=C9F05_19030
NZ_PYKE01000277.1	Protein Homology	CDS	19828	20607	.	+	0	ID=cds-WP_135370530.1;Parent=gene-C9F05_RS18500;Dbxref=GenBank:WP_135370530.1;Name=WP_135370530.1;gbkey=CDS;gene=ssaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460386.1;locus_tag=C9F05_RS18500;product=SPI-2 type III secretion system apparatus protein SsaT;protein_id=WP_135370530.1;transl_table=11
NZ_PYKE01000277.1	RefSeq	pseudogene	20604	21229	.	+	.	ID=gene-C9F05_RS18505;Name=ssaU;end_range=21229,.;gbkey=Gene;gene=ssaU;gene_biotype=pseudogene;locus_tag=C9F05_RS18505;old_locus_tag=C9F05_19035;partial=true;pseudo=true
NZ_PYKE01000277.1	Protein Homology	CDS	20604	21229	.	+	0	ID=cds-C9F05_RS18505;Parent=gene-C9F05_RS18505;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=21229,.;gbkey=CDS;gene=ssaU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460387.1;locus_tag=C9F05_RS18505;partial=true;product=SPI-2 type III secretion system apparatus protein SsaU;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000038.1 1 61486
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000038.1	RefSeq	region	1	61486	.	+	.	ID=NZ_PYKE01000038.1:1..61486;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000038.1	RefSeq	gene	88	1659	.	+	.	ID=gene-C9F05_RS02200;Name=garD;gbkey=Gene;gene=garD;gene_biotype=protein_coding;locus_tag=C9F05_RS02200;old_locus_tag=C9F05_02240
NZ_PYKE01000038.1	Protein Homology	CDS	88	1659	.	+	0	ID=cds-WP_079965361.1;Parent=gene-C9F05_RS02200;Dbxref=GenBank:WP_079965361.1;Name=WP_079965361.1;Ontology_term=GO:0046392,GO:0008867;gbkey=CDS;gene=garD;go_function=galactarate dehydratase activity|0008867||IEA;go_process=galactarate catabolic process|0046392||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462163.1;locus_tag=C9F05_RS02200;product=galactarate dehydratase;protein_id=WP_079965361.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	1919	2773	.	+	.	ID=gene-C9F05_RS02205;Name=C9F05_RS02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02205;old_locus_tag=C9F05_02245
NZ_PYKE01000038.1	Protein Homology	CDS	1919	2773	.	+	0	ID=cds-WP_000469979.1;Parent=gene-C9F05_RS02205;Dbxref=GenBank:WP_000469979.1;Name=WP_000469979.1;Ontology_term=GO:0005975,GO:0008270,GO:0009025;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,tagatose-bisphosphate aldolase activity|0009025||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462166.1;locus_tag=C9F05_RS02205;product=tagatose bisphosphate family class II aldolase;protein_id=WP_000469979.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	2893	4164	.	+	.	ID=gene-C9F05_RS02210;Name=gatZ;gbkey=Gene;gene=gatZ;gene_biotype=protein_coding;locus_tag=C9F05_RS02210;old_locus_tag=C9F05_02250
NZ_PYKE01000038.1	Protein Homology	CDS	2893	4164	.	+	0	ID=cds-WP_076727237.1;Parent=gene-C9F05_RS02210;Dbxref=GenBank:WP_076727237.1;Name=WP_076727237.1;gbkey=CDS;gene=gatZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462170.1;locus_tag=C9F05_RS02210;product=tagatose-bisphosphate aldolase subunit GatZ;protein_id=WP_076727237.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	4179	4643	.	+	.	ID=gene-C9F05_RS02215;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=C9F05_RS02215;old_locus_tag=C9F05_02255
NZ_PYKE01000038.1	Protein Homology	CDS	4179	4643	.	+	0	ID=cds-WP_000080445.1;Parent=gene-C9F05_RS02215;Dbxref=GenBank:WP_000080445.1;Name=WP_000080445.1;gbkey=CDS;gene=gatA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462171.1;locus_tag=C9F05_RS02215;product=PTS galactitol transporter subunit IIA;protein_id=WP_000080445.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	4674	4958	.	+	.	ID=gene-C9F05_RS02220;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=C9F05_RS02220;old_locus_tag=C9F05_02260
NZ_PYKE01000038.1	Protein Homology	CDS	4674	4958	.	+	0	ID=cds-WP_000824293.1;Parent=gene-C9F05_RS02220;Dbxref=GenBank:WP_000824293.1;Name=WP_000824293.1;gbkey=CDS;gene=gatB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462172.1;locus_tag=C9F05_RS02220;product=PTS galactitol transporter subunit IIB;protein_id=WP_000824293.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	4962	6335	.	+	.	ID=gene-C9F05_RS02225;Name=C9F05_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02225;old_locus_tag=C9F05_02265
NZ_PYKE01000038.1	Protein Homology	CDS	4962	6335	.	+	0	ID=cds-WP_000490601.1;Parent=gene-C9F05_RS02225;Dbxref=GenBank:WP_000490601.1;Name=WP_000490601.1;Ontology_term=GO:0009401,GO:0015796,GO:0015577,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=galactitol transmembrane transporter activity|0015577||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,galactitol transmembrane transport|0015796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462173.1;locus_tag=C9F05_RS02225;product=galactitol-specific PTS transporter subunit IIC;protein_id=WP_000490601.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	6379	7422	.	+	.	ID=gene-C9F05_RS02230;Name=gatD;gbkey=Gene;gene=gatD;gene_biotype=protein_coding;locus_tag=C9F05_RS02230;old_locus_tag=C9F05_02270
NZ_PYKE01000038.1	Protein Homology	CDS	6379	7422	.	+	0	ID=cds-WP_000844187.1;Parent=gene-C9F05_RS02230;Dbxref=GenBank:WP_000844187.1;Name=WP_000844187.1;Ontology_term=GO:0008270,GO:0016491;gbkey=CDS;gene=gatD;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462174.1;locus_tag=C9F05_RS02230;product=galactitol-1-phosphate 5-dehydrogenase;protein_id=WP_000844187.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	7533	8306	.	+	.	ID=gene-C9F05_RS02235;Name=C9F05_RS02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02235;old_locus_tag=C9F05_02275
NZ_PYKE01000038.1	Protein Homology	CDS	7533	8306	.	+	0	ID=cds-WP_001083899.1;Parent=gene-C9F05_RS02235;Dbxref=GenBank:WP_001083899.1;Name=WP_001083899.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462175.1;locus_tag=C9F05_RS02235;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_001083899.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	8464	9327	.	-	.	ID=gene-C9F05_RS02240;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=C9F05_RS02240;old_locus_tag=C9F05_02280
NZ_PYKE01000038.1	Protein Homology	CDS	8464	9327	.	-	0	ID=cds-WP_000812295.1;Parent=gene-C9F05_RS02240;Dbxref=GenBank:WP_000812295.1;Name=WP_000812295.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rsmI;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462176.1;locus_tag=C9F05_RS02240;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_000812295.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	9391	11433	.	+	.	ID=gene-C9F05_RS02245;Name=C9F05_RS02245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02245;old_locus_tag=C9F05_02285
NZ_PYKE01000038.1	Protein Homology	CDS	9391	11433	.	+	0	ID=cds-WP_135369996.1;Parent=gene-C9F05_RS02245;Dbxref=GenBank:WP_135369996.1;Name=WP_135369996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462177.1;locus_tag=C9F05_RS02245;product=penicillin-binding protein activator;protein_id=WP_135369996.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	11391	11786	.	+	.	ID=gene-C9F05_RS02250;Name=C9F05_RS02250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02250;old_locus_tag=C9F05_02290
NZ_PYKE01000038.1	Protein Homology	CDS	11391	11786	.	+	0	ID=cds-WP_023994019.1;Parent=gene-C9F05_RS02250;Dbxref=GenBank:WP_023994019.1;Name=WP_023994019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462178.1;locus_tag=C9F05_RS02250;product=YraN family protein;protein_id=WP_023994019.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	11808	12398	.	+	.	ID=gene-C9F05_RS02255;Name=diaA;gbkey=Gene;gene=diaA;gene_biotype=protein_coding;locus_tag=C9F05_RS02255;old_locus_tag=C9F05_02295
NZ_PYKE01000038.1	Protein Homology	CDS	11808	12398	.	+	0	ID=cds-WP_000893481.1;Parent=gene-C9F05_RS02255;Dbxref=GenBank:WP_000893481.1;Name=WP_000893481.1;gbkey=CDS;gene=diaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462179.1;locus_tag=C9F05_RS02255;product=DnaA initiator-associating protein DiaA;protein_id=WP_000893481.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	12408	12983	.	+	.	ID=gene-C9F05_RS02260;Name=dolP;gbkey=Gene;gene=dolP;gene_biotype=protein_coding;locus_tag=C9F05_RS02260;old_locus_tag=C9F05_02300
NZ_PYKE01000038.1	Protein Homology	CDS	12408	12983	.	+	0	ID=cds-WP_000643280.1;Parent=gene-C9F05_RS02260;Dbxref=GenBank:WP_000643280.1;Name=WP_000643280.1;Ontology_term=GO:0006970;gbkey=CDS;gene=dolP;go_process=response to osmotic stress|0006970||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462180.1;locus_tag=C9F05_RS02260;product=division/outer membrane stress-associated lipid-binding lipoprotein;protein_id=WP_000643280.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	13050	13685	.	-	.	ID=gene-C9F05_RS02265;Name=C9F05_RS02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02265;old_locus_tag=C9F05_02305
NZ_PYKE01000038.1	Protein Homology	CDS	13050	13685	.	-	0	ID=cds-WP_001532495.1;Parent=gene-C9F05_RS02265;Dbxref=GenBank:WP_001532495.1;Name=WP_001532495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000084527.1;locus_tag=C9F05_RS02265;product=NAD(P)H-binding protein;protein_id=WP_001532495.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	13816	14334	.	+	.	ID=gene-C9F05_RS02270;Name=yhbO;gbkey=Gene;gene=yhbO;gene_biotype=protein_coding;locus_tag=C9F05_RS02270;old_locus_tag=C9F05_02310
NZ_PYKE01000038.1	Protein Homology	CDS	13816	14334	.	+	0	ID=cds-WP_000037599.1;Parent=gene-C9F05_RS02270;Dbxref=GenBank:WP_000037599.1;Name=WP_000037599.1;gbkey=CDS;gene=yhbO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462182.1;locus_tag=C9F05_RS02270;product=protein/nucleic acid deglycase;protein_id=WP_000037599.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	14314	14757	.	-	.	ID=gene-C9F05_RS02275;Name=C9F05_RS02275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02275;old_locus_tag=C9F05_02315
NZ_PYKE01000038.1	Protein Homology	CDS	14314	14757	.	-	0	ID=cds-WP_000380404.1;Parent=gene-C9F05_RS02275;Dbxref=GenBank:WP_000380404.1;Name=WP_000380404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462183.1;locus_tag=C9F05_RS02275;product=YhbP family protein;protein_id=WP_000380404.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	14795	15112	.	+	.	ID=gene-C9F05_RS02280;Name=C9F05_RS02280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02280;old_locus_tag=C9F05_02320
NZ_PYKE01000038.1	Protein Homology	CDS	14795	15112	.	+	0	ID=cds-WP_000928379.1;Parent=gene-C9F05_RS02280;Dbxref=GenBank:WP_000928379.1;Name=WP_000928379.1;Ontology_term=GO:0004518;gbkey=CDS;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462184.3;locus_tag=C9F05_RS02280;product=GIY-YIG nuclease family protein;protein_id=WP_000928379.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	15099	15602	.	-	.	ID=gene-C9F05_RS02285;Name=C9F05_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02285;old_locus_tag=C9F05_02325
NZ_PYKE01000038.1	Protein Homology	CDS	15099	15602	.	-	0	ID=cds-WP_000908562.1;Parent=gene-C9F05_RS02285;Dbxref=GenBank:WP_000908562.1;Name=WP_000908562.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462185.1;locus_tag=C9F05_RS02285;product=GNAT family N-acetyltransferase;protein_id=WP_000908562.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	15596	16120	.	-	.	ID=gene-C9F05_RS02290;Name=ubiT;gbkey=Gene;gene=ubiT;gene_biotype=protein_coding;locus_tag=C9F05_RS02290;old_locus_tag=C9F05_02330
NZ_PYKE01000038.1	Protein Homology	CDS	15596	16120	.	-	0	ID=cds-WP_000884721.1;Parent=gene-C9F05_RS02290;Dbxref=GenBank:WP_000884721.1;Name=WP_000884721.1;Ontology_term=GO:0006744,GO:0110142;gbkey=CDS;gene=ubiT;go_component=ubiquinone biosynthesis complex|0110142||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462186.1;locus_tag=C9F05_RS02290;product=ubiquinone anaerobic biosynthesis accessory factor UbiT;protein_id=WP_000884721.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	16337	17332	.	+	.	ID=gene-C9F05_RS02295;Name=ubiU;gbkey=Gene;gene=ubiU;gene_biotype=protein_coding;locus_tag=C9F05_RS02295;old_locus_tag=C9F05_02335
NZ_PYKE01000038.1	Protein Homology	CDS	16337	17332	.	+	0	ID=cds-WP_000421309.1;Parent=gene-C9F05_RS02295;Dbxref=GenBank:WP_000421309.1;Name=WP_000421309.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiU;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017457364.1;locus_tag=C9F05_RS02295;product=ubiquinone anaerobic biosynthesis protein UbiU;protein_id=WP_000421309.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	17341	18219	.	+	.	ID=gene-C9F05_RS02300;Name=C9F05_RS02300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02300;old_locus_tag=C9F05_02340
NZ_PYKE01000038.1	Protein Homology	CDS	17341	18219	.	+	0	ID=cds-WP_000877721.1;Parent=gene-C9F05_RS02300;Dbxref=GenBank:WP_000877721.1;Name=WP_000877721.1;Ontology_term=GO:0006744;gbkey=CDS;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312067.2;locus_tag=C9F05_RS02300;product=U32 family peptidase;protein_id=WP_000877721.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	18397	19404	.	+	.	ID=gene-C9F05_RS02310;Name=C9F05_RS02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02310;old_locus_tag=C9F05_02350
NZ_PYKE01000038.1	Protein Homology	CDS	18397	19404	.	+	0	ID=cds-WP_135369998.1;Parent=gene-C9F05_RS02310;Dbxref=GenBank:WP_135369998.1;Name=WP_135369998.1;Ontology_term=GO:0016705;gbkey=CDS;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen|0016705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462189.1;locus_tag=C9F05_RS02310;product=luciferase-like monooxygenase;protein_id=WP_135369998.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	19495	20739	.	-	.	ID=gene-C9F05_RS02315;Name=mtr;gbkey=Gene;gene=mtr;gene_biotype=protein_coding;locus_tag=C9F05_RS02315;old_locus_tag=C9F05_02355
NZ_PYKE01000038.1	Protein Homology	CDS	19495	20739	.	-	0	ID=cds-WP_135369999.1;Parent=gene-C9F05_RS02315;Dbxref=GenBank:WP_135369999.1;Name=WP_135369999.1;Ontology_term=GO:0015801,GO:0015173,GO:0005886;gbkey=CDS;gene=mtr;go_component=plasma membrane|0005886||IEA;go_function=aromatic amino acid transmembrane transporter activity|0015173||IEA;go_process=aromatic amino acid transport|0015801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462192.1;locus_tag=C9F05_RS02315;product=tryptophan permease;protein_id=WP_135369999.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	20893	22782	.	-	.	ID=gene-C9F05_RS02320;Name=deaD;gbkey=Gene;gene=deaD;gene_biotype=protein_coding;locus_tag=C9F05_RS02320;old_locus_tag=C9F05_02360
NZ_PYKE01000038.1	Protein Homology	CDS	20893	22782	.	-	0	ID=cds-WP_000807244.1;Parent=gene-C9F05_RS02320;Dbxref=GenBank:WP_000807244.1;Name=WP_000807244.1;gbkey=CDS;gene=deaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312070.2;locus_tag=C9F05_RS02320;product=ATP-dependent RNA helicase DeaD;protein_id=WP_000807244.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	22775	22855	.	-	.	ID=gene-C9F05_RS02325;Name=yrbN;gbkey=Gene;gene=yrbN;gene_biotype=protein_coding;locus_tag=C9F05_RS02325
NZ_PYKE01000038.1	Protein Homology	CDS	22775	22855	.	-	0	ID=cds-WP_010723222.1;Parent=gene-C9F05_RS02325;Dbxref=GenBank:WP_010723222.1;Name=WP_010723222.1;gbkey=CDS;gene=yrbN;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791258.1;locus_tag=C9F05_RS02325;product=protein YrbN;protein_id=WP_010723222.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	22961	23845	.	-	.	ID=gene-C9F05_RS02330;Name=nlpI;gbkey=Gene;gene=nlpI;gene_biotype=protein_coding;locus_tag=C9F05_RS02330;old_locus_tag=C9F05_02365
NZ_PYKE01000038.1	Protein Homology	CDS	22961	23845	.	-	0	ID=cds-WP_000802069.1;Parent=gene-C9F05_RS02330;Dbxref=GenBank:WP_000802069.1;Name=WP_000802069.1;Ontology_term=GO:0005515;gbkey=CDS;gene=nlpI;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020802045.1;locus_tag=C9F05_RS02330;product=lipoprotein NlpI;protein_id=WP_000802069.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	23955	26090	.	-	.	ID=gene-C9F05_RS02335;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=C9F05_RS02335;old_locus_tag=C9F05_02370
NZ_PYKE01000038.1	Protein Homology	CDS	23955	26090	.	-	0	ID=cds-WP_023187335.1;Parent=gene-C9F05_RS02335;Dbxref=GenBank:WP_023187335.1;Name=WP_023187335.1;Ontology_term=GO:0006402,GO:0003723,GO:0004654;gbkey=CDS;gene=pnp;go_function=RNA binding|0003723||IEA,polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462195.1;locus_tag=C9F05_RS02335;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_023187335.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	26332	26601	.	-	.	ID=gene-C9F05_RS02340;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=C9F05_RS02340;old_locus_tag=C9F05_02375
NZ_PYKE01000038.1	Protein Homology	CDS	26332	26601	.	-	0	ID=cds-WP_000059465.1;Parent=gene-C9F05_RS02340;Dbxref=GenBank:WP_000059465.1;Name=WP_000059465.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1;locus_tag=C9F05_RS02340;product=30S ribosomal protein S15;protein_id=WP_000059465.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	26752	27696	.	-	.	ID=gene-C9F05_RS02345;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=C9F05_RS02345;old_locus_tag=C9F05_02380
NZ_PYKE01000038.1	Protein Homology	CDS	26752	27696	.	-	0	ID=cds-WP_135370000.1;Parent=gene-C9F05_RS02345;Dbxref=GenBank:WP_135370000.1;Name=WP_135370000.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462197.1;locus_tag=C9F05_RS02345;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_135370000.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	27696	28097	.	-	.	ID=gene-C9F05_RS02350;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=C9F05_RS02350;old_locus_tag=C9F05_02385
NZ_PYKE01000038.1	Protein Homology	CDS	27696	28097	.	-	0	ID=cds-WP_001040199.1;Parent=gene-C9F05_RS02350;Dbxref=GenBank:WP_001040199.1;Name=WP_001040199.1;Ontology_term=GO:0006364;gbkey=CDS;gene=rbfA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001712908.1;locus_tag=C9F05_RS02350;product=30S ribosome-binding factor RbfA;protein_id=WP_001040199.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	28318	30996	.	-	.	ID=gene-C9F05_RS02355;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=C9F05_RS02355;old_locus_tag=C9F05_02390
NZ_PYKE01000038.1	Protein Homology	CDS	28318	30996	.	-	0	ID=cds-WP_000133064.1;Parent=gene-C9F05_RS02355;Dbxref=GenBank:WP_000133064.1;Name=WP_000133064.1;Ontology_term=GO:0006413,GO:0003743,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462199.1;locus_tag=C9F05_RS02355;product=translation initiation factor IF-2;protein_id=WP_000133064.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	31021	32523	.	-	.	ID=gene-C9F05_RS02360;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=C9F05_RS02360;old_locus_tag=C9F05_02395
NZ_PYKE01000038.1	Protein Homology	CDS	31021	32523	.	-	0	ID=cds-WP_001031038.1;Parent=gene-C9F05_RS02360;Dbxref=GenBank:WP_001031038.1;Name=WP_001031038.1;Ontology_term=GO:0006353,GO:0003723;gbkey=CDS;gene=nusA;go_function=RNA binding|0003723||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005131833.1;locus_tag=C9F05_RS02360;product=transcription termination factor NusA;protein_id=WP_001031038.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	32551	33003	.	-	.	ID=gene-C9F05_RS02365;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=C9F05_RS02365;old_locus_tag=C9F05_02400
NZ_PYKE01000038.1	Protein Homology	CDS	32551	33003	.	-	0	ID=cds-WP_000105461.1;Parent=gene-C9F05_RS02365;Dbxref=GenBank:WP_000105461.1;Name=WP_000105461.1;Ontology_term=GO:0042274;gbkey=CDS;gene=rimP;go_process=ribosomal small subunit biogenesis|0042274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004125659.1;locus_tag=C9F05_RS02365;product=ribosome maturation factor RimP;protein_id=WP_000105461.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	33211	33287	.	-	.	ID=gene-C9F05_RS02370;Name=C9F05_RS02370;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS02370;old_locus_tag=C9F05_02405
NZ_PYKE01000038.1	tRNAscan-SE	tRNA	33211	33287	.	-	.	ID=rna-C9F05_RS02370;Parent=gene-C9F05_RS02370;anticodon=(pos:complement(33251..33253));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS02370;product=tRNA-Met
NZ_PYKE01000038.1	tRNAscan-SE	exon	33211	33287	.	-	.	ID=exon-C9F05_RS02370-1;Parent=rna-C9F05_RS02370;anticodon=(pos:complement(33251..33253));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS02370;product=tRNA-Met
NZ_PYKE01000038.1	RefSeq	gene	33631	34974	.	+	.	ID=gene-C9F05_RS02375;Name=argG;gbkey=Gene;gene=argG;gene_biotype=protein_coding;locus_tag=C9F05_RS02375;old_locus_tag=C9F05_02410
NZ_PYKE01000038.1	Protein Homology	CDS	33631	34974	.	+	0	ID=cds-WP_167851635.1;Parent=gene-C9F05_RS02375;Dbxref=GenBank:WP_167851635.1;Name=WP_167851635.1;Ontology_term=GO:0006526,GO:0004055,GO:0005524,GO:0042803;gbkey=CDS;gene=argG;go_function=argininosuccinate synthase activity|0004055||IEA,ATP binding|0005524||IEA,protein homodimerization activity|0042803||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708973.1;locus_tag=C9F05_RS02375;product=argininosuccinate synthase;protein_id=WP_167851635.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	35173	35259	.	-	.	ID=gene-C9F05_RS02380;Name=C9F05_RS02380;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS02380;old_locus_tag=C9F05_02415
NZ_PYKE01000038.1	tRNAscan-SE	tRNA	35173	35259	.	-	.	ID=rna-C9F05_RS02380;Parent=gene-C9F05_RS02380;anticodon=(pos:complement(35223..35225));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS02380;product=tRNA-Leu
NZ_PYKE01000038.1	tRNAscan-SE	exon	35173	35259	.	-	.	ID=exon-C9F05_RS02380-1;Parent=rna-C9F05_RS02380;anticodon=(pos:complement(35223..35225));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS02380;product=tRNA-Leu
NZ_PYKE01000038.1	RefSeq	gene	35273	35605	.	-	.	ID=gene-C9F05_RS02385;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=C9F05_RS02385;old_locus_tag=C9F05_02420
NZ_PYKE01000038.1	Protein Homology	CDS	35273	35605	.	-	0	ID=cds-WP_000272680.1;Parent=gene-C9F05_RS02385;Dbxref=GenBank:WP_000272680.1;Name=WP_000272680.1;Ontology_term=GO:0015739,GO:0015136,GO:0016020;gbkey=CDS;gene=secG;go_component=membrane|0016020||IEA;go_function=sialic acid transmembrane transporter activity|0015136||IEA;go_process=sialic acid transport|0015739||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462204.1;locus_tag=C9F05_RS02385;product=preprotein translocase subunit SecG;protein_id=WP_000272680.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	35828	37165	.	-	.	ID=gene-C9F05_RS02390;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=C9F05_RS02390;old_locus_tag=C9F05_02425
NZ_PYKE01000038.1	Protein Homology	CDS	35828	37165	.	-	0	ID=cds-WP_000071169.1;Parent=gene-C9F05_RS02390;Dbxref=GenBank:WP_000071169.1;Name=WP_000071169.1;Ontology_term=GO:0005975,GO:0000287,GO:0008966,GO:0016868;gbkey=CDS;gene=glmM;go_function=magnesium ion binding|0000287||IEA,phosphoglucosamine mutase activity|0008966||IEA,intramolecular phosphotransferase activity|0016868||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462205.1;locus_tag=C9F05_RS02390;product=phosphoglucosamine mutase;protein_id=WP_000071169.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	37158	38006	.	-	.	ID=gene-C9F05_RS02395;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=C9F05_RS02395;old_locus_tag=C9F05_02430
NZ_PYKE01000038.1	Protein Homology	CDS	37158	38006	.	-	0	ID=cds-WP_000764711.1;Parent=gene-C9F05_RS02395;Dbxref=GenBank:WP_000764711.1;Name=WP_000764711.1;Ontology_term=GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462206.1;locus_tag=C9F05_RS02395;product=dihydropteroate synthase;protein_id=WP_000764711.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	38111	40045	.	-	.	ID=gene-C9F05_RS02400;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=C9F05_RS02400;old_locus_tag=C9F05_02435
NZ_PYKE01000038.1	Protein Homology	CDS	38111	40045	.	-	0	ID=cds-WP_001107481.1;Parent=gene-C9F05_RS02400;Dbxref=GenBank:WP_001107481.1;Name=WP_001107481.1;Ontology_term=GO:0006508,GO:0004176,GO:0004222;gbkey=CDS;gene=ftsH;go_function=ATP-dependent peptidase activity|0004176||IEA,metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014833437.1;locus_tag=C9F05_RS02400;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_001107481.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	40149	40775	.	-	.	ID=gene-C9F05_RS02405;Name=rlmE;gbkey=Gene;gene=rlmE;gene_biotype=protein_coding;locus_tag=C9F05_RS02405;old_locus_tag=C9F05_02445
NZ_PYKE01000038.1	Protein Homology	CDS	40149	40775	.	-	0	ID=cds-WP_000145974.1;Parent=gene-C9F05_RS02405;Dbxref=GenBank:WP_000145974.1;Name=WP_000145974.1;Ontology_term=GO:0001510,GO:0006364,GO:0016436;gbkey=CDS;gene=rlmE;go_function=rRNA (uridine) methyltransferase activity|0016436||IEA;go_process=RNA methylation|0001510||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462208.1;locus_tag=C9F05_RS02405;product=23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE;protein_id=WP_000145974.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	40902	41195	.	+	.	ID=gene-C9F05_RS02410;Name=yhbY;gbkey=Gene;gene=yhbY;gene_biotype=protein_coding;locus_tag=C9F05_RS02410;old_locus_tag=C9F05_02450
NZ_PYKE01000038.1	Protein Homology	CDS	40902	41195	.	+	0	ID=cds-WP_001592995.1;Parent=gene-C9F05_RS02410;Dbxref=GenBank:WP_001592995.1;Name=WP_001592995.1;gbkey=CDS;gene=yhbY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014833438.1;locus_tag=C9F05_RS02410;product=ribosome assembly RNA-binding protein YhbY;protein_id=WP_001592995.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	41351	41827	.	-	.	ID=gene-C9F05_RS02415;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=C9F05_RS02415;old_locus_tag=C9F05_02455
NZ_PYKE01000038.1	Protein Homology	CDS	41351	41827	.	-	0	ID=cds-WP_135370002.1;Parent=gene-C9F05_RS02415;Dbxref=GenBank:WP_135370002.1;Name=WP_135370002.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greA;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006178768.1;locus_tag=C9F05_RS02415;product=transcription elongation factor GreA;protein_id=WP_135370002.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	42075	43508	.	+	.	ID=gene-C9F05_RS02420;Name=dacB;gbkey=Gene;gene=dacB;gene_biotype=protein_coding;locus_tag=C9F05_RS02420;old_locus_tag=C9F05_02460
NZ_PYKE01000038.1	Protein Homology	CDS	42075	43508	.	+	0	ID=cds-WP_001212681.1;Parent=gene-C9F05_RS02420;Dbxref=GenBank:WP_001212681.1;Name=WP_001212681.1;Ontology_term=GO:0006508,GO:0004185;gbkey=CDS;gene=dacB;go_function=serine-type carboxypeptidase activity|0004185||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462211.1;locus_tag=C9F05_RS02420;product=serine-type D-Ala-D-Ala carboxypeptidase;protein_id=WP_001212681.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	43639	44811	.	-	.	ID=gene-C9F05_RS02425;Name=cgtA;gbkey=Gene;gene=cgtA;gene_biotype=protein_coding;locus_tag=C9F05_RS02425;old_locus_tag=C9F05_02465
NZ_PYKE01000038.1	Protein Homology	CDS	43639	44811	.	-	0	ID=cds-WP_000673556.1;Parent=gene-C9F05_RS02425;Dbxref=GenBank:WP_000673556.1;Name=WP_000673556.1;Ontology_term=GO:0000287,GO:0003924,GO:0005525;gbkey=CDS;gene=cgtA;go_function=magnesium ion binding|0000287||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462212.1;locus_tag=C9F05_RS02425;product=Obg family GTPase CgtA;protein_id=WP_000673556.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	44827	45792	.	-	.	ID=gene-C9F05_RS02430;Name=C9F05_RS02430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02430;old_locus_tag=C9F05_02470
NZ_PYKE01000038.1	Protein Homology	CDS	44827	45792	.	-	0	ID=cds-WP_000813052.1;Parent=gene-C9F05_RS02430;Dbxref=GenBank:WP_000813052.1;Name=WP_000813052.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012135318.1;locus_tag=C9F05_RS02430;product=DMT family transporter;protein_id=WP_000813052.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	45922	46179	.	-	.	ID=gene-C9F05_RS02435;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=C9F05_RS02435;old_locus_tag=C9F05_02475
NZ_PYKE01000038.1	Protein Homology	CDS	45922	46179	.	-	0	ID=cds-WP_000940593.1;Parent=gene-C9F05_RS02435;Dbxref=GenBank:WP_000940593.1;Name=WP_000940593.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmA;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933559.1;locus_tag=C9F05_RS02435;product=50S ribosomal protein L27;protein_id=WP_000940593.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	46199	46510	.	-	.	ID=gene-C9F05_RS02440;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=C9F05_RS02440;old_locus_tag=C9F05_02480
NZ_PYKE01000038.1	Protein Homology	CDS	46199	46510	.	-	0	ID=cds-WP_000271396.1;Parent=gene-C9F05_RS02440;Dbxref=GenBank:WP_000271396.1;Name=WP_000271396.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rplU;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015960603.1;locus_tag=C9F05_RS02440;product=50S ribosomal protein L21;protein_id=WP_000271396.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	46768	47739	.	+	.	ID=gene-C9F05_RS02445;Name=ispB;gbkey=Gene;gene=ispB;gene_biotype=protein_coding;locus_tag=C9F05_RS02445;old_locus_tag=C9F05_02485
NZ_PYKE01000038.1	Protein Homology	CDS	46768	47739	.	+	0	ID=cds-WP_001047354.1;Parent=gene-C9F05_RS02445;Dbxref=GenBank:WP_001047354.1;Name=WP_001047354.1;Ontology_term=GO:0008299;gbkey=CDS;gene=ispB;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462215.1;locus_tag=C9F05_RS02445;product=octaprenyl diphosphate synthase;protein_id=WP_001047354.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	47971	48258	.	+	.	ID=gene-C9F05_RS02450;Name=sfsB;gbkey=Gene;gene=sfsB;gene_biotype=protein_coding;locus_tag=C9F05_RS02450;old_locus_tag=C9F05_02490
NZ_PYKE01000038.1	Protein Homology	CDS	47971	48258	.	+	0	ID=cds-WP_000444168.1;Parent=gene-C9F05_RS02450;Dbxref=GenBank:WP_000444168.1;Name=WP_000444168.1;gbkey=CDS;gene=sfsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462216.1;locus_tag=C9F05_RS02450;product=DNA-binding transcriptional regulator SfsB;protein_id=WP_000444168.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	48316	49575	.	-	.	ID=gene-C9F05_RS02455;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=C9F05_RS02455;old_locus_tag=C9F05_02495
NZ_PYKE01000038.1	Protein Homology	CDS	48316	49575	.	-	0	ID=cds-WP_000357288.1;Parent=gene-C9F05_RS02455;Dbxref=GenBank:WP_000357288.1;Name=WP_000357288.1;Ontology_term=GO:0019277,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=UDP-N-acetylgalactosamine biosynthetic process|0019277||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462217.1;locus_tag=C9F05_RS02455;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_000357288.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	49629	49883	.	-	.	ID=gene-C9F05_RS02460;Name=ibaG;gbkey=Gene;gene=ibaG;gene_biotype=protein_coding;locus_tag=C9F05_RS02460;old_locus_tag=C9F05_02500
NZ_PYKE01000038.1	Protein Homology	CDS	49629	49883	.	-	0	ID=cds-WP_001518349.1;Parent=gene-C9F05_RS02460;Dbxref=GenBank:WP_001518349.1;Name=WP_001518349.1;gbkey=CDS;gene=ibaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417657.2;locus_tag=C9F05_RS02460;product=BolA family iron metabolism protein IbaG;protein_id=WP_001518349.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	50071	50367	.	-	.	ID=gene-C9F05_RS02465;Name=mlaB;gbkey=Gene;gene=mlaB;gene_biotype=protein_coding;locus_tag=C9F05_RS02465;old_locus_tag=C9F05_02505
NZ_PYKE01000038.1	Protein Homology	CDS	50071	50367	.	-	0	ID=cds-WP_000188843.1;Parent=gene-C9F05_RS02465;Dbxref=GenBank:WP_000188843.1;Name=WP_000188843.1;gbkey=CDS;gene=mlaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462219.1;locus_tag=C9F05_RS02465;product=lipid asymmetry maintenance protein MlaB;protein_id=WP_000188843.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	50367	51002	.	-	.	ID=gene-C9F05_RS02470;Name=mlaC;gbkey=Gene;gene=mlaC;gene_biotype=protein_coding;locus_tag=C9F05_RS02470;old_locus_tag=C9F05_02510
NZ_PYKE01000038.1	Protein Homology	CDS	50367	51002	.	-	0	ID=cds-WP_000476475.1;Parent=gene-C9F05_RS02470;Dbxref=GenBank:WP_000476475.1;Name=WP_000476475.1;gbkey=CDS;gene=mlaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462220.1;locus_tag=C9F05_RS02470;product=phospholipid-binding protein MlaC;protein_id=WP_000476475.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	51021	51572	.	-	.	ID=gene-C9F05_RS02475;Name=mlaD;gbkey=Gene;gene=mlaD;gene_biotype=protein_coding;locus_tag=C9F05_RS02475;old_locus_tag=C9F05_02515
NZ_PYKE01000038.1	Protein Homology	CDS	51021	51572	.	-	0	ID=cds-WP_011233188.1;Parent=gene-C9F05_RS02475;Dbxref=GenBank:WP_011233188.1;Name=WP_011233188.1;Ontology_term=GO:0015914;gbkey=CDS;gene=mlaD;go_process=phospholipid transport|0015914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462221.1;locus_tag=C9F05_RS02475;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_011233188.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	51577	52359	.	-	.	ID=gene-C9F05_RS02480;Name=mlaE;gbkey=Gene;gene=mlaE;gene_biotype=protein_coding;locus_tag=C9F05_RS02480;old_locus_tag=C9F05_02520
NZ_PYKE01000038.1	Protein Homology	CDS	51577	52359	.	-	0	ID=cds-WP_000925786.1;Parent=gene-C9F05_RS02480;Dbxref=GenBank:WP_000925786.1;Name=WP_000925786.1;Ontology_term=GO:0043190;gbkey=CDS;gene=mlaE;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014071945.1;locus_tag=C9F05_RS02480;product=lipid asymmetry maintenance ABC transporter permease subunit MlaE;protein_id=WP_000925786.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	52367	53179	.	-	.	ID=gene-C9F05_RS02485;Name=mlaF;gbkey=Gene;gene=mlaF;gene_biotype=protein_coding;locus_tag=C9F05_RS02485;old_locus_tag=C9F05_02525
NZ_PYKE01000038.1	Protein Homology	CDS	52367	53179	.	-	0	ID=cds-WP_000531566.1;Parent=gene-C9F05_RS02485;Dbxref=GenBank:WP_000531566.1;Name=WP_000531566.1;Ontology_term=GO:0005524;gbkey=CDS;gene=mlaF;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462223.1;locus_tag=C9F05_RS02485;product=phospholipid ABC transporter ATP-binding protein MlaF;protein_id=WP_000531566.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	53392	54369	.	+	.	ID=gene-C9F05_RS02490;Name=C9F05_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02490;old_locus_tag=C9F05_02530
NZ_PYKE01000038.1	Protein Homology	CDS	53392	54369	.	+	0	ID=cds-WP_000922736.1;Parent=gene-C9F05_RS02490;Dbxref=GenBank:WP_000922736.1;Name=WP_000922736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462224.1;locus_tag=C9F05_RS02490;product=calcium/sodium antiporter;protein_id=WP_000922736.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	54383	55369	.	+	.	ID=gene-C9F05_RS02495;Name=kdsD;gbkey=Gene;gene=kdsD;gene_biotype=protein_coding;locus_tag=C9F05_RS02495;old_locus_tag=C9F05_02535
NZ_PYKE01000038.1	Protein Homology	CDS	54383	55369	.	+	0	ID=cds-WP_135370003.1;Parent=gene-C9F05_RS02495;Dbxref=GenBank:WP_135370003.1;Name=WP_135370003.1;Ontology_term=GO:1901135,GO:0016853,GO:0097367;gbkey=CDS;gene=kdsD;go_function=isomerase activity|0016853||IEA,carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462225.1;locus_tag=C9F05_RS02495;product=arabinose-5-phosphate isomerase KdsD;protein_id=WP_135370003.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	55390	55956	.	+	.	ID=gene-C9F05_RS02500;Name=kdsC;gbkey=Gene;gene=kdsC;gene_biotype=protein_coding;locus_tag=C9F05_RS02500;old_locus_tag=C9F05_02540
NZ_PYKE01000038.1	Protein Homology	CDS	55390	55956	.	+	0	ID=cds-WP_000030029.1;Parent=gene-C9F05_RS02500;Dbxref=GenBank:WP_000030029.1;Name=WP_000030029.1;Ontology_term=GO:0016788;gbkey=CDS;gene=kdsC;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462226.1;locus_tag=C9F05_RS02500;product=3-deoxy-manno-octulosonate-8-phosphatase KdsC;protein_id=WP_000030029.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	55953	56528	.	+	.	ID=gene-C9F05_RS02505;Name=lptC;gbkey=Gene;gene=lptC;gene_biotype=protein_coding;locus_tag=C9F05_RS02505;old_locus_tag=C9F05_02545
NZ_PYKE01000038.1	Protein Homology	CDS	55953	56528	.	+	0	ID=cds-WP_000047845.1;Parent=gene-C9F05_RS02505;Dbxref=GenBank:WP_000047845.1;Name=WP_000047845.1;gbkey=CDS;gene=lptC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462227.1;locus_tag=C9F05_RS02505;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_000047845.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	56497	57051	.	+	.	ID=gene-C9F05_RS02510;Name=lptA;gbkey=Gene;gene=lptA;gene_biotype=protein_coding;locus_tag=C9F05_RS02510;old_locus_tag=C9F05_02550
NZ_PYKE01000038.1	Protein Homology	CDS	56497	57051	.	+	0	ID=cds-WP_000669770.1;Parent=gene-C9F05_RS02510;Dbxref=GenBank:WP_000669770.1;Name=WP_000669770.1;gbkey=CDS;gene=lptA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462228.1;locus_tag=C9F05_RS02510;product=lipopolysaccharide ABC transporter substrate-binding protein LptA;protein_id=WP_000669770.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	57058	57783	.	+	.	ID=gene-C9F05_RS02515;Name=lptB;gbkey=Gene;gene=lptB;gene_biotype=protein_coding;locus_tag=C9F05_RS02515;old_locus_tag=C9F05_02555
NZ_PYKE01000038.1	Protein Homology	CDS	57058	57783	.	+	0	ID=cds-WP_000224104.1;Parent=gene-C9F05_RS02515;Dbxref=GenBank:WP_000224104.1;Name=WP_000224104.1;Ontology_term=GO:0055085,GO:0005524,GO:0043190;gbkey=CDS;gene=lptB;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003861862.1;locus_tag=C9F05_RS02515;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_000224104.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	57831	59264	.	+	.	ID=gene-C9F05_RS02520;Name=rpoN;gbkey=Gene;gene=rpoN;gene_biotype=protein_coding;locus_tag=C9F05_RS02520;old_locus_tag=C9F05_02560
NZ_PYKE01000038.1	Protein Homology	CDS	57831	59264	.	+	0	ID=cds-WP_135370004.1;Parent=gene-C9F05_RS02520;Dbxref=GenBank:WP_135370004.1;Name=WP_135370004.1;Ontology_term=GO:0006352,GO:0001216,GO:0003677,GO:0016987;gbkey=CDS;gene=rpoN;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462230.1;locus_tag=C9F05_RS02520;product=RNA polymerase factor sigma-54;protein_id=WP_135370004.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	59287	59574	.	+	.	ID=gene-C9F05_RS02525;Name=hpf;gbkey=Gene;gene=hpf;gene_biotype=protein_coding;locus_tag=C9F05_RS02525;old_locus_tag=C9F05_02565
NZ_PYKE01000038.1	Protein Homology	CDS	59287	59574	.	+	0	ID=cds-WP_001176589.1;Parent=gene-C9F05_RS02525;Dbxref=GenBank:WP_001176589.1;Name=WP_001176589.1;Ontology_term=GO:0044238;gbkey=CDS;gene=hpf;go_process=primary metabolic process|0044238||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462231.1;locus_tag=C9F05_RS02525;product=ribosome hibernation promoting factor;protein_id=WP_001176589.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	59692	60183	.	+	.	ID=gene-C9F05_RS02530;Name=ptsN;gbkey=Gene;gene=ptsN;gene_biotype=protein_coding;locus_tag=C9F05_RS02530;old_locus_tag=C9F05_02570
NZ_PYKE01000038.1	Protein Homology	CDS	59692	60183	.	+	0	ID=cds-WP_000609332.1;Parent=gene-C9F05_RS02530;Dbxref=GenBank:WP_000609332.1;Name=WP_000609332.1;gbkey=CDS;gene=ptsN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462232.1;locus_tag=C9F05_RS02530;product=PTS IIA-like nitrogen regulatory protein PtsN;protein_id=WP_000609332.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	60229	61083	.	+	.	ID=gene-C9F05_RS02535;Name=rapZ;gbkey=Gene;gene=rapZ;gene_biotype=protein_coding;locus_tag=C9F05_RS02535;old_locus_tag=C9F05_02575
NZ_PYKE01000038.1	Protein Homology	CDS	60229	61083	.	+	0	ID=cds-WP_000243749.1;Parent=gene-C9F05_RS02535;Dbxref=GenBank:WP_000243749.1;Name=WP_000243749.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rapZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462233.1;locus_tag=C9F05_RS02535;product=RNase adapter RapZ;protein_id=WP_000243749.1;transl_table=11
NZ_PYKE01000038.1	RefSeq	gene	61080	61352	.	+	.	ID=gene-C9F05_RS02540;Name=npr;gbkey=Gene;gene=npr;gene_biotype=protein_coding;locus_tag=C9F05_RS02540;old_locus_tag=C9F05_02580
NZ_PYKE01000038.1	Protein Homology	CDS	61080	61352	.	+	0	ID=cds-WP_000216797.1;Parent=gene-C9F05_RS02540;Dbxref=GenBank:WP_000216797.1;Name=WP_000216797.1;gbkey=CDS;gene=npr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000216792.1;locus_tag=C9F05_RS02540;product=PTS phosphocarrier protein NPr;protein_id=WP_000216797.1;transl_table=11
##sequence-region NZ_PYKE01000290.1 1 20974
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000290.1	RefSeq	region	1	20974	.	+	.	ID=NZ_PYKE01000290.1:1..20974;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000290.1	RefSeq	gene	383	2422	.	-	.	ID=gene-C9F05_RS19215;Name=fhuB;gbkey=Gene;gene=fhuB;gene_biotype=protein_coding;locus_tag=C9F05_RS19215;old_locus_tag=C9F05_19755
NZ_PYKE01000290.1	Protein Homology	CDS	383	2422	.	-	0	ID=cds-WP_135370553.1;Parent=gene-C9F05_RS19215;Dbxref=GenBank:WP_135370553.1;Name=WP_135370553.1;Ontology_term=GO:0022857;gbkey=CDS;gene=fhuB;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016504759.1;locus_tag=C9F05_RS19215;product=Fe(3+)-hydroxamate ABC transporter permease FhuB;protein_id=WP_135370553.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	2437	3327	.	-	.	ID=gene-C9F05_RS19220;Name=fhuD;gbkey=Gene;gene=fhuD;gene_biotype=protein_coding;locus_tag=C9F05_RS19220;old_locus_tag=C9F05_19760
NZ_PYKE01000290.1	Protein Homology	CDS	2437	3327	.	-	0	ID=cds-WP_001205358.1;Parent=gene-C9F05_RS19220;Dbxref=GenBank:WP_001205358.1;Name=WP_001205358.1;gbkey=CDS;gene=fhuD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459198.1;locus_tag=C9F05_RS19220;product=Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD;protein_id=WP_001205358.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	3327	4124	.	-	.	ID=gene-C9F05_RS19225;Name=fhuC;gbkey=Gene;gene=fhuC;gene_biotype=protein_coding;locus_tag=C9F05_RS19225;old_locus_tag=C9F05_19765
NZ_PYKE01000290.1	Protein Homology	CDS	3327	4124	.	-	0	ID=cds-WP_001157203.1;Parent=gene-C9F05_RS19225;Dbxref=GenBank:WP_001157203.1;Name=WP_001157203.1;Ontology_term=GO:0005524;gbkey=CDS;gene=fhuC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459197.1;locus_tag=C9F05_RS19225;product=Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;protein_id=WP_001157203.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	4173	6362	.	-	.	ID=gene-C9F05_RS19230;Name=fhuA;gbkey=Gene;gene=fhuA;gene_biotype=protein_coding;locus_tag=C9F05_RS19230;old_locus_tag=C9F05_19770
NZ_PYKE01000290.1	Protein Homology	CDS	4173	6362	.	-	0	ID=cds-WP_000113219.1;Parent=gene-C9F05_RS19230;Dbxref=GenBank:WP_000113219.1;Name=WP_000113219.1;Ontology_term=GO:0015891,GO:0015344,GO:0038023,GO:0009279;gbkey=CDS;gene=fhuA;go_component=cell outer membrane|0009279||IEA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459196.1;locus_tag=C9F05_RS19230;product=ferrichrome porin FhuA;protein_id=WP_000113219.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	6655	9177	.	-	.	ID=gene-C9F05_RS19235;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;locus_tag=C9F05_RS19235;old_locus_tag=C9F05_19775
NZ_PYKE01000290.1	Protein Homology	CDS	6655	9177	.	-	0	ID=cds-WP_000918127.1;Parent=gene-C9F05_RS19235;Dbxref=GenBank:WP_000918127.1;Name=WP_000918127.1;Ontology_term=GO:0009252,GO:0046677,GO:0008658,GO:0008955,GO:0009274;gbkey=CDS;gene=mrcB;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459195.1;locus_tag=C9F05_RS19235;product=bifunctional glycosyl transferase/transpeptidase;protein_id=WP_000918127.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	9318	11747	.	-	.	ID=gene-C9F05_RS19240;Name=hrpB;gbkey=Gene;gene=hrpB;gene_biotype=protein_coding;locus_tag=C9F05_RS19240;old_locus_tag=C9F05_19780
NZ_PYKE01000290.1	Protein Homology	CDS	9318	11747	.	-	0	ID=cds-WP_023993175.1;Parent=gene-C9F05_RS19240;Dbxref=GenBank:WP_023993175.1;Name=WP_023993175.1;Ontology_term=GO:0004386,GO:0005524;gbkey=CDS;gene=hrpB;go_function=helicase activity|0004386||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414690.4;locus_tag=C9F05_RS19240;product=ATP-dependent helicase HrpB;protein_id=WP_023993175.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	11820	12350	.	+	.	ID=gene-C9F05_RS19245;Name=thpR;gbkey=Gene;gene=thpR;gene_biotype=protein_coding;locus_tag=C9F05_RS19245;old_locus_tag=C9F05_19785
NZ_PYKE01000290.1	Protein Homology	CDS	11820	12350	.	+	0	ID=cds-WP_001294175.1;Parent=gene-C9F05_RS19245;Dbxref=GenBank:WP_001294175.1;Name=WP_001294175.1;Ontology_term=GO:0004113,GO:0008664;gbkey=CDS;gene=thpR;go_function=2'%2C3'-cyclic-nucleotide 3'-phosphodiesterase activity|0004113||IEA,RNA 2'%2C3'-cyclic 3'-phosphodiesterase activity|0008664||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459193.1;locus_tag=C9F05_RS19245;product=RNA 2'%2C3'-cyclic phosphodiesterase;protein_id=WP_001294175.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	12367	13071	.	+	.	ID=gene-C9F05_RS19250;Name=sfsA;gbkey=Gene;gene=sfsA;gene_biotype=protein_coding;locus_tag=C9F05_RS19250;old_locus_tag=C9F05_19790
NZ_PYKE01000290.1	Protein Homology	CDS	12367	13071	.	+	0	ID=cds-WP_000899412.1;Parent=gene-C9F05_RS19250;Dbxref=GenBank:WP_000899412.1;Name=WP_000899412.1;Ontology_term=GO:0003677;gbkey=CDS;gene=sfsA;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459192.1;locus_tag=C9F05_RS19250;product=DNA/RNA nuclease SfsA;protein_id=WP_000899412.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	13248	13703	.	+	.	ID=gene-C9F05_RS19255;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=C9F05_RS19255;old_locus_tag=C9F05_19795
NZ_PYKE01000290.1	Protein Homology	CDS	13248	13703	.	+	0	ID=cds-WP_001155232.1;Parent=gene-C9F05_RS19255;Dbxref=GenBank:WP_001155232.1;Name=WP_001155232.1;gbkey=CDS;gene=dksA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002209354.1;locus_tag=C9F05_RS19255;product=RNA polymerase-binding protein DksA;protein_id=WP_001155232.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	13772	14668	.	+	.	ID=gene-C9F05_RS19260;Name=gluQRS;gbkey=Gene;gene=gluQRS;gene_biotype=protein_coding;locus_tag=C9F05_RS19260;old_locus_tag=C9F05_19800
NZ_PYKE01000290.1	Protein Homology	CDS	13772	14668	.	+	0	ID=cds-WP_000132295.1;Parent=gene-C9F05_RS19260;Dbxref=GenBank:WP_000132295.1;Name=WP_000132295.1;Ontology_term=GO:0006400,GO:0043039,GO:0000166,GO:0004812,GO:0005524;gbkey=CDS;gene=gluQRS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA;go_process=tRNA modification|0006400||IEA,tRNA aminoacylation|0043039||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001549989.1;locus_tag=C9F05_RS19260;product=tRNA glutamyl-Q(34) synthetase GluQRS;protein_id=WP_000132295.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	14830	16227	.	+	.	ID=gene-C9F05_RS19265;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=C9F05_RS19265;old_locus_tag=C9F05_19805
NZ_PYKE01000290.1	Protein Homology	CDS	14830	16227	.	+	0	ID=cds-WP_217810212.1;Parent=gene-C9F05_RS19265;Dbxref=GenBank:WP_217810212.1;Name=WP_217810212.1;Ontology_term=GO:0003723,GO:1990817;gbkey=CDS;gene=pcnB;go_function=RNA binding|0003723||IEA,poly(A) RNA polymerase activity|1990817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414685.4;locus_tag=C9F05_RS19265;product=polynucleotide adenylyltransferase PcnB;protein_id=WP_217810212.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	16224	16703	.	+	.	ID=gene-C9F05_RS19270;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=C9F05_RS19270;old_locus_tag=C9F05_19810
NZ_PYKE01000290.1	Protein Homology	CDS	16224	16703	.	+	0	ID=cds-WP_000150773.1;Parent=gene-C9F05_RS19270;Dbxref=GenBank:WP_000150773.1;Name=WP_000150773.1;gbkey=CDS;gene=folK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459188.1;locus_tag=C9F05_RS19270;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_000150773.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	16824	17615	.	+	.	ID=gene-C9F05_RS19275;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=C9F05_RS19275;old_locus_tag=C9F05_19815
NZ_PYKE01000290.1	Protein Homology	CDS	16824	17615	.	+	0	ID=cds-WP_000805489.1;Parent=gene-C9F05_RS19275;Dbxref=GenBank:WP_000805489.1;Name=WP_000805489.1;Ontology_term=GO:0015940,GO:0003864;gbkey=CDS;gene=panB;go_function=3-methyl-2-oxobutanoate hydroxymethyltransferase activity|0003864||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000805487.1;locus_tag=C9F05_RS19275;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_000805489.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	17741	18595	.	+	.	ID=gene-C9F05_RS19280;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=C9F05_RS19280;old_locus_tag=C9F05_19820
NZ_PYKE01000290.1	Protein Homology	CDS	17741	18595	.	+	0	ID=cds-WP_000905348.1;Parent=gene-C9F05_RS19280;Dbxref=GenBank:WP_000905348.1;Name=WP_000905348.1;Ontology_term=GO:0015940,GO:0004592;gbkey=CDS;gene=panC;go_function=pantoate-beta-alanine ligase activity|0004592||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459186.1;locus_tag=C9F05_RS19280;product=pantoate--beta-alanine ligase;protein_id=WP_000905348.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	18690	19070	.	+	.	ID=gene-C9F05_RS19285;Name=panD;gbkey=Gene;gene=panD;gene_biotype=protein_coding;locus_tag=C9F05_RS19285;old_locus_tag=C9F05_19825
NZ_PYKE01000290.1	Protein Homology	CDS	18690	19070	.	+	0	ID=cds-WP_000621526.1;Parent=gene-C9F05_RS19285;Dbxref=GenBank:WP_000621526.1;Name=WP_000621526.1;Ontology_term=GO:0006523,GO:0004068;gbkey=CDS;gene=panD;go_function=aspartate 1-decarboxylase activity|0004068||IEA;go_process=alanine biosynthetic process|0006523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124704.1;locus_tag=C9F05_RS19285;product=aspartate 1-decarboxylase;protein_id=WP_000621526.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	19077	20306	.	-	.	ID=gene-C9F05_RS19290;Name=C9F05_RS19290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19290;old_locus_tag=C9F05_19830
NZ_PYKE01000290.1	Protein Homology	CDS	19077	20306	.	-	0	ID=cds-WP_000245312.1;Parent=gene-C9F05_RS19290;Dbxref=GenBank:WP_000245312.1;Name=WP_000245312.1;Ontology_term=GO:0005975,GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459184.1;locus_tag=C9F05_RS19290;product=polysaccharide deacetylase family protein;protein_id=WP_000245312.1;transl_table=11
NZ_PYKE01000290.1	RefSeq	gene	20368	20808	.	-	.	ID=gene-C9F05_RS19295;Name=C9F05_RS19295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19295;old_locus_tag=C9F05_19835
NZ_PYKE01000290.1	Protein Homology	CDS	20368	20808	.	-	0	ID=cds-WP_000901960.1;Parent=gene-C9F05_RS19295;Dbxref=GenBank:WP_000901960.1;Name=WP_000901960.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459183.1;locus_tag=C9F05_RS19295;product=PTS sugar transporter subunit IIA;protein_id=WP_000901960.1;transl_table=11
##sequence-region NZ_PYKE01000037.1 1 1278
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000037.1	RefSeq	region	1	1278	.	+	.	ID=NZ_PYKE01000037.1:1..1278;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000037.1	RefSeq	gene	56	1278	.	+	.	ID=gene-C9F05_RS02195;Name=C9F05_RS02195;end_range=1278,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS02195;old_locus_tag=C9F05_02235;partial=true
NZ_PYKE01000037.1	Protein Homology	CDS	56	407	.	+	0	ID=cds-WP_135369995.1;Parent=gene-C9F05_RS02195;Dbxref=GenBank:WP_135369995.1;Name=WP_135369995.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611657.1;locus_tag=C9F05_RS02195;partial=true;product=IS3-like element ISSen1 family transposase;protein_id=WP_135369995.1;transl_table=11
NZ_PYKE01000037.1	Protein Homology	CDS	407	1278	.	+	2	ID=cds-WP_135369995.1;Parent=gene-C9F05_RS02195;Dbxref=GenBank:WP_135369995.1;Name=WP_135369995.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;end_range=1278,.;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611657.1;locus_tag=C9F05_RS02195;partial=true;product=IS3-like element ISSen1 family transposase;protein_id=WP_135369995.1;transl_table=11
##sequence-region NZ_PYKE01000176.1 1 1254
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000176.1	RefSeq	region	1	1254	.	+	.	ID=NZ_PYKE01000176.1:1..1254;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000176.1	RefSeq	pseudogene	1	231	.	+	.	ID=gene-C9F05_RS11920;Name=C9F05_RS11920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS11920;old_locus_tag=C9F05_12265;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000176.1	Protein Homology	CDS	1	231	.	+	0	ID=cds-C9F05_RS11920;Parent=gene-C9F05_RS11920;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460589.1;locus_tag=C9F05_RS11920;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000176.1	RefSeq	gene	354	755	.	-	.	ID=gene-C9F05_RS11925;Name=steB;gbkey=Gene;gene=steB;gene_biotype=protein_coding;locus_tag=C9F05_RS11925;old_locus_tag=C9F05_12270
NZ_PYKE01000176.1	Protein Homology	CDS	354	755	.	-	0	ID=cds-WP_135370311.1;Parent=gene-C9F05_RS11925;Dbxref=GenBank:WP_135370311.1;Name=WP_135370311.1;gbkey=CDS;gene=steB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448047.1;locus_tag=C9F05_RS11925;product=type III secretion system effector SteB;protein_id=WP_135370311.1;transl_table=11
##sequence-region NZ_PYKE01000302.1 1 20627
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000302.1	RefSeq	region	1	20627	.	+	.	ID=NZ_PYKE01000302.1:1..20627;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000302.1	RefSeq	gene	1	2110	.	-	.	ID=gene-C9F05_RS20625;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=protein_coding;locus_tag=C9F05_RS20625;old_locus_tag=C9F05_21190;partial=true;start_range=.,1
NZ_PYKE01000302.1	Protein Homology	CDS	1	2110	.	-	0	ID=cds-WP_135370596.1;Parent=gene-C9F05_RS20625;Dbxref=GenBank:WP_135370596.1;Name=WP_135370596.1;Note=penicillin-binding protein 1C;Ontology_term=GO:0009252,GO:0008658,GO:0008955;gbkey=CDS;gene=pbpC;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461466.1;locus_tag=C9F05_RS20625;partial=true;product=peptidoglycan glycosyltransferase PbpC;protein_id=WP_135370596.1;start_range=.,1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	2111	7045	.	-	.	ID=gene-C9F05_RS20630;Name=C9F05_RS20630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20630;old_locus_tag=C9F05_21195
NZ_PYKE01000302.1	Protein Homology	CDS	2111	7045	.	-	0	ID=cds-WP_135370597.1;Parent=gene-C9F05_RS20630;Dbxref=GenBank:WP_135370597.1;Name=WP_135370597.1;Ontology_term=GO:0010951,GO:0004866;gbkey=CDS;go_function=endopeptidase inhibitor activity|0004866||IEA;go_process=negative regulation of endopeptidase activity|0010951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461467.1;locus_tag=C9F05_RS20630;product=alpha-2-macroglobulin family protein;protein_id=WP_135370597.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	7254	8096	.	+	.	ID=gene-C9F05_RS20635;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=C9F05_RS20635;old_locus_tag=C9F05_21200
NZ_PYKE01000302.1	Protein Homology	CDS	7254	8096	.	+	0	ID=cds-WP_000205241.1;Parent=gene-C9F05_RS20635;Dbxref=GenBank:WP_000205241.1;Name=WP_000205241.1;Ontology_term=GO:0004792;gbkey=CDS;gene=sseA;go_function=thiosulfate-cyanide sulfurtransferase activity|0004792||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461468.1;locus_tag=C9F05_RS20635;product=3-mercaptopyruvate sulfurtransferase;protein_id=WP_000205241.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	8076	8300	.	-	.	ID=gene-C9F05_RS23600;Name=C9F05_RS23600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23600;old_locus_tag=C9F05_21205
NZ_PYKE01000302.1	Protein Homology	CDS	8076	8300	.	-	0	ID=cds-WP_001535525.1;Parent=gene-C9F05_RS23600;Dbxref=GenBank:WP_001535525.1;Name=WP_001535525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014344128.1;locus_tag=C9F05_RS23600;product=hypothetical protein;protein_id=WP_001535525.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	8342	9010	.	+	.	ID=gene-C9F05_RS20640;Name=C9F05_RS20640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20640;old_locus_tag=C9F05_21210
NZ_PYKE01000302.1	Protein Homology	CDS	8342	9010	.	+	0	ID=cds-WP_023993592.1;Parent=gene-C9F05_RS20640;Dbxref=GenBank:WP_023993592.1;Name=WP_023993592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461469.1;locus_tag=C9F05_RS20640;product=DUF5066 family protein;protein_id=WP_023993592.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	9426	9542	.	+	.	ID=gene-C9F05_RS24080;Name=timP;gbkey=Gene;gene=timP;gene_biotype=protein_coding;locus_tag=C9F05_RS24080
NZ_PYKE01000302.1	Protein Homology	CDS	9426	9542	.	+	0	ID=cds-WP_350028759.1;Parent=gene-C9F05_RS24080;Dbxref=GenBank:WP_350028759.1;Name=WP_350028759.1;gbkey=CDS;gene=timP;inference=COORDINATES: protein motif:HMM:NF040796.1;locus_tag=C9F05_RS24080;product=small toxic inner membrane protein TimP;protein_id=WP_350028759.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	9579	10355	.	-	.	ID=gene-C9F05_RS20650;Name=sseB;gbkey=Gene;gene=sseB;gene_biotype=protein_coding;locus_tag=C9F05_RS20650;old_locus_tag=C9F05_21220
NZ_PYKE01000302.1	Protein Homology	CDS	9579	10355	.	-	0	ID=cds-WP_001533245.1;Parent=gene-C9F05_RS20650;Dbxref=GenBank:WP_001533245.1;Name=WP_001533245.1;gbkey=CDS;gene=sseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311415.2;locus_tag=C9F05_RS20650;product=enhanced serine sensitivity protein SseB;protein_id=WP_001533245.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	10465	11748	.	-	.	ID=gene-C9F05_RS20655;Name=pepB;gbkey=Gene;gene=pepB;gene_biotype=protein_coding;locus_tag=C9F05_RS20655;old_locus_tag=C9F05_21230
NZ_PYKE01000302.1	Protein Homology	CDS	10465	11748	.	-	0	ID=cds-WP_135370598.1;Parent=gene-C9F05_RS20655;Dbxref=GenBank:WP_135370598.1;Name=WP_135370598.1;Ontology_term=GO:0006508,GO:0019538,GO:0030145,GO:0070006;gbkey=CDS;gene=pepB;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA,protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461471.1;locus_tag=C9F05_RS20655;product=aminopeptidase PepB;protein_id=WP_135370598.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	11995	12195	.	-	.	ID=gene-C9F05_RS20660;Name=iscX;gbkey=Gene;gene=iscX;gene_biotype=protein_coding;locus_tag=C9F05_RS20660;old_locus_tag=C9F05_21240
NZ_PYKE01000302.1	Protein Homology	CDS	11995	12195	.	-	0	ID=cds-WP_000523621.1;Parent=gene-C9F05_RS20660;Dbxref=GenBank:WP_000523621.1;Name=WP_000523621.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=iscX;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004104502.1;locus_tag=C9F05_RS20660;product=Fe-S cluster assembly protein IscX;protein_id=WP_000523621.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	12207	12542	.	-	.	ID=gene-C9F05_RS20665;Name=fdx;gbkey=Gene;gene=fdx;gene_biotype=protein_coding;locus_tag=C9F05_RS20665;old_locus_tag=C9F05_21245
NZ_PYKE01000302.1	Protein Homology	CDS	12207	12542	.	-	0	ID=cds-WP_001124466.1;Parent=gene-C9F05_RS20665;Dbxref=GenBank:WP_001124466.1;Name=WP_001124466.1;Ontology_term=GO:0016226,GO:0009055,GO:0051537;gbkey=CDS;gene=fdx;go_function=electron transfer activity|0009055||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015683702.1;locus_tag=C9F05_RS20665;product=ISC system 2Fe-2S type ferredoxin;protein_id=WP_001124466.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	12544	14394	.	-	.	ID=gene-C9F05_RS20670;Name=hscA;gbkey=Gene;gene=hscA;gene_biotype=protein_coding;locus_tag=C9F05_RS20670;old_locus_tag=C9F05_21250
NZ_PYKE01000302.1	Protein Homology	CDS	12544	14394	.	-	0	ID=cds-WP_001196653.1;Parent=gene-C9F05_RS20670;Dbxref=GenBank:WP_001196653.1;Name=WP_001196653.1;Ontology_term=GO:0006457,GO:0016226,GO:0005515,GO:0005524,GO:0016887;gbkey=CDS;gene=hscA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001559634.1;locus_tag=C9F05_RS20670;product=Fe-S protein assembly chaperone HscA;protein_id=WP_001196653.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	14407	14922	.	-	.	ID=gene-C9F05_RS20675;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=C9F05_RS20675;old_locus_tag=C9F05_21255
NZ_PYKE01000302.1	Protein Homology	CDS	14407	14922	.	-	0	ID=cds-WP_000384398.1;Parent=gene-C9F05_RS20675;Dbxref=GenBank:WP_000384398.1;Name=WP_000384398.1;Ontology_term=GO:0051604,GO:0051087;gbkey=CDS;gene=hscB;go_function=protein-folding chaperone binding|0051087||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461475.1;locus_tag=C9F05_RS20675;product=co-chaperone HscB;protein_id=WP_000384398.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	15118	15441	.	-	.	ID=gene-C9F05_RS20680;Name=iscA;gbkey=Gene;gene=iscA;gene_biotype=protein_coding;locus_tag=C9F05_RS20680;old_locus_tag=C9F05_21260
NZ_PYKE01000302.1	Protein Homology	CDS	15118	15441	.	-	0	ID=cds-WP_000028952.1;Parent=gene-C9F05_RS20680;Dbxref=GenBank:WP_000028952.1;Name=WP_000028952.1;gbkey=CDS;gene=iscA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461476.1;locus_tag=C9F05_RS20680;product=iron-sulfur cluster assembly protein IscA;protein_id=WP_000028952.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	15470	15856	.	-	.	ID=gene-C9F05_RS20685;Name=iscU;gbkey=Gene;gene=iscU;gene_biotype=protein_coding;locus_tag=C9F05_RS20685;old_locus_tag=C9F05_21265
NZ_PYKE01000302.1	Protein Homology	CDS	15470	15856	.	-	0	ID=cds-WP_000331704.1;Parent=gene-C9F05_RS20685;Dbxref=GenBank:WP_000331704.1;Name=WP_000331704.1;Ontology_term=GO:0016226,GO:0005198,GO:0005506,GO:0051536;gbkey=CDS;gene=iscU;go_function=structural molecule activity|0005198||IEA,iron ion binding|0005506||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000331707.1;locus_tag=C9F05_RS20685;product=Fe-S cluster assembly scaffold IscU;protein_id=WP_000331704.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	15884	17098	.	-	.	ID=gene-C9F05_RS20690;Name=iscS;gbkey=Gene;gene=iscS;gene_biotype=protein_coding;locus_tag=C9F05_RS20690;old_locus_tag=C9F05_21270
NZ_PYKE01000302.1	Protein Homology	CDS	15884	17098	.	-	0	ID=cds-WP_000775263.1;Parent=gene-C9F05_RS20690;Dbxref=GenBank:WP_000775263.1;Name=WP_000775263.1;gbkey=CDS;gene=iscS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017459011.1;locus_tag=C9F05_RS20690;product=cysteine desulfurase;protein_id=WP_000775263.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	17279	17773	.	-	.	ID=gene-C9F05_RS20695;Name=iscR;gbkey=Gene;gene=iscR;gene_biotype=protein_coding;locus_tag=C9F05_RS20695;old_locus_tag=C9F05_21275
NZ_PYKE01000302.1	Protein Homology	CDS	17279	17773	.	-	0	ID=cds-WP_001241346.1;Parent=gene-C9F05_RS20695;Dbxref=GenBank:WP_001241346.1;Name=WP_001241346.1;gbkey=CDS;gene=iscR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001241352.1;locus_tag=C9F05_RS20695;product=Fe-S cluster assembly transcriptional regulator IscR;protein_id=WP_001241346.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	17933	18664	.	-	.	ID=gene-C9F05_RS20700;Name=trmJ;gbkey=Gene;gene=trmJ;gene_biotype=protein_coding;locus_tag=C9F05_RS20700;old_locus_tag=C9F05_21280
NZ_PYKE01000302.1	Protein Homology	CDS	17933	18664	.	-	0	ID=cds-WP_000940032.1;Parent=gene-C9F05_RS20700;Dbxref=GenBank:WP_000940032.1;Name=WP_000940032.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;gene=trmJ;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461480.1;locus_tag=C9F05_RS20700;product=tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ;protein_id=WP_000940032.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	18783	19586	.	+	.	ID=gene-C9F05_RS20705;Name=suhB;gbkey=Gene;gene=suhB;gene_biotype=protein_coding;locus_tag=C9F05_RS20705;old_locus_tag=C9F05_21285
NZ_PYKE01000302.1	Protein Homology	CDS	18783	19586	.	+	0	ID=cds-WP_000553473.1;Parent=gene-C9F05_RS20705;Dbxref=GenBank:WP_000553473.1;Name=WP_000553473.1;Ontology_term=GO:0046854,GO:0008934;gbkey=CDS;gene=suhB;go_function=inositol monophosphate 1-phosphatase activity|0008934||IEA;go_process=phosphatidylinositol phosphate biosynthetic process|0046854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000553460.1;locus_tag=C9F05_RS20705;product=inositol-1-monophosphatase;protein_id=WP_000553473.1;transl_table=11
NZ_PYKE01000302.1	RefSeq	gene	19731	20609	.	+	.	ID=gene-C9F05_RS20710;Name=C9F05_RS20710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20710;old_locus_tag=C9F05_21290
NZ_PYKE01000302.1	Protein Homology	CDS	19731	20609	.	+	0	ID=cds-WP_023993589.1;Parent=gene-C9F05_RS20710;Dbxref=GenBank:WP_023993589.1;Name=WP_023993589.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461482.1;locus_tag=C9F05_RS20710;product=alpha/beta hydrolase;protein_id=WP_023993589.1;transl_table=11
##sequence-region NZ_PYKE01000116.1 1 1220
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000116.1	RefSeq	region	1	1220	.	+	.	ID=NZ_PYKE01000116.1:1..1220;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000116.1	RefSeq	gene	440	1201	.	+	.	ID=gene-C9F05_RS08550;Name=C9F05_RS08550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS08550;old_locus_tag=C9F05_08765
NZ_PYKE01000116.1	Protein Homology	CDS	440	1201	.	+	0	ID=cds-WP_000791534.1;Parent=gene-C9F05_RS08550;Dbxref=GenBank:WP_000791534.1;Name=WP_000791534.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459039.1;locus_tag=C9F05_RS08550;product=outer membrane protein OmpK;protein_id=WP_000791534.1;transl_table=11
##sequence-region NZ_PYKE01000148.1 1 1207
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000148.1	RefSeq	region	1	1207	.	+	.	ID=NZ_PYKE01000148.1:1..1207;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000148.1	RefSeq	gene	1	775	.	+	.	ID=gene-C9F05_RS10695;Name=C9F05_RS10695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10695;old_locus_tag=C9F05_10960;partial=true;start_range=.,1
NZ_PYKE01000148.1	Protein Homology	CDS	1	775	.	+	1	ID=cds-WP_135370262.1;Parent=gene-C9F05_RS10695;Dbxref=GenBank:WP_135370262.1;Name=WP_135370262.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001805103.1;locus_tag=C9F05_RS10695;partial=true;product=glycosyltransferase;protein_id=WP_135370262.1;start_range=.,1;transl_table=11
NZ_PYKE01000148.1	RefSeq	gene	779	1207	.	+	.	ID=gene-C9F05_RS10700;Name=C9F05_RS10700;end_range=1207,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10700;old_locus_tag=C9F05_10965;partial=true
NZ_PYKE01000148.1	Protein Homology	CDS	779	1207	.	+	0	ID=cds-WP_135370263.1;Parent=gene-C9F05_RS10700;Dbxref=GenBank:WP_135370263.1;Name=WP_135370263.1;Ontology_term=GO:0006486,GO:0016757;end_range=1207,.;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001138993.1;locus_tag=C9F05_RS10700;partial=true;product=glycosyltransferase family A protein;protein_id=WP_135370263.1;transl_table=11
##sequence-region NZ_PYKE01000225.1 1 1196
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000225.1	RefSeq	region	1	1196	.	+	.	ID=NZ_PYKE01000225.1:1..1196;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000225.1	RefSeq	pseudogene	1	581	.	-	.	ID=gene-C9F05_RS14760;Name=C9F05_RS14760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS14760;old_locus_tag=C9F05_15175;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000225.1	Protein Homology	CDS	1	581	.	-	0	ID=cds-C9F05_RS14760;Parent=gene-C9F05_RS14760;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001564476.1;locus_tag=C9F05_RS14760;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_PYKE01000225.1	RefSeq	gene	917	1105	.	-	.	ID=gene-C9F05_RS14765;Name=C9F05_RS14765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14765;old_locus_tag=C9F05_15180
NZ_PYKE01000225.1	Protein Homology	CDS	917	1105	.	-	0	ID=cds-WP_001749760.1;Parent=gene-C9F05_RS14765;Dbxref=GenBank:WP_001749760.1;Name=WP_001749760.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226015.1;locus_tag=C9F05_RS14765;product=hypothetical protein;protein_id=WP_001749760.1;transl_table=11
##sequence-region NZ_PYKE01000211.1 1 1185
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000211.1	RefSeq	region	1	1185	.	+	.	ID=NZ_PYKE01000211.1:1..1185;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000211.1	RefSeq	gene	3	572	.	+	.	ID=gene-C9F05_RS23865;Name=C9F05_RS23865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23865
NZ_PYKE01000211.1	Protein Homology	CDS	3	572	.	+	0	ID=cds-WP_255121308.1;Parent=gene-C9F05_RS23865;Dbxref=GenBank:WP_255121308.1;Name=WP_255121308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000376822.1;locus_tag=C9F05_RS23865;product=hypothetical protein;protein_id=WP_255121308.1;transl_table=11
NZ_PYKE01000211.1	RefSeq	gene	611	1066	.	+	.	ID=gene-C9F05_RS13690;Name=C9F05_RS13690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13690;old_locus_tag=C9F05_14080
NZ_PYKE01000211.1	Protein Homology	CDS	611	1066	.	+	0	ID=cds-WP_000487337.1;Parent=gene-C9F05_RS13690;Dbxref=GenBank:WP_000487337.1;Name=WP_000487337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000487332.1;locus_tag=C9F05_RS13690;product=hypothetical protein;protein_id=WP_000487337.1;transl_table=11
##sequence-region NZ_PYKE01000213.1 1 20489
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000213.1	RefSeq	region	1	20489	.	+	.	ID=NZ_PYKE01000213.1:1..20489;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000213.1	RefSeq	gene	7	1221	.	+	.	ID=gene-C9F05_RS13730;Name=fes;gbkey=Gene;gene=fes;gene_biotype=protein_coding;locus_tag=C9F05_RS13730;old_locus_tag=C9F05_14125
NZ_PYKE01000213.1	Protein Homology	CDS	7	1221	.	+	0	ID=cds-WP_135370370.1;Parent=gene-C9F05_RS13730;Dbxref=GenBank:WP_135370370.1;Name=WP_135370370.1;Ontology_term=GO:0005506,GO:0008849;gbkey=CDS;gene=fes;go_function=iron ion binding|0005506||IEA,enterochelin esterase activity|0008849||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459578.1;locus_tag=C9F05_RS13730;product=enterochelin esterase;protein_id=WP_135370370.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	1252	1470	.	+	.	ID=gene-C9F05_RS13735;Name=C9F05_RS13735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13735;old_locus_tag=C9F05_14130
NZ_PYKE01000213.1	Protein Homology	CDS	1252	1470	.	+	0	ID=cds-WP_000396006.1;Parent=gene-C9F05_RS13735;Dbxref=GenBank:WP_000396006.1;Name=WP_000396006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459579.1;locus_tag=C9F05_RS13735;product=MbtH family protein;protein_id=WP_000396006.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	1467	5351	.	+	.	ID=gene-C9F05_RS13740;Name=entF;gbkey=Gene;gene=entF;gene_biotype=protein_coding;locus_tag=C9F05_RS13740;old_locus_tag=C9F05_14135
NZ_PYKE01000213.1	Protein Homology	CDS	1467	5351	.	+	0	ID=cds-WP_135370366.1;Parent=gene-C9F05_RS13740;Dbxref=GenBank:WP_135370366.1;Name=WP_135370366.1;Ontology_term=GO:0009058,GO:0003824,GO:0031177;gbkey=CDS;gene=entF;go_function=catalytic activity|0003824||IEA,phosphopantetheine binding|0031177||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459580.1;locus_tag=C9F05_RS13740;product=enterobactin non-ribosomal peptide synthetase EntF;protein_id=WP_135370366.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	5601	6737	.	+	.	ID=gene-C9F05_RS13745;Name=wzz(fepE);gbkey=Gene;gene=wzz(fepE);gene_biotype=protein_coding;locus_tag=C9F05_RS13745;old_locus_tag=C9F05_14140
NZ_PYKE01000213.1	Protein Homology	CDS	5601	6737	.	+	0	ID=cds-WP_001139585.1;Parent=gene-C9F05_RS13745;Dbxref=GenBank:WP_001139585.1;Name=WP_001139585.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;gene=wzz(fepE);go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459581.1;locus_tag=C9F05_RS13745;product=LPS O-antigen length regulator Wzz(fepE);protein_id=WP_001139585.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	6791	7585	.	-	.	ID=gene-C9F05_RS13750;Name=fepC;gbkey=Gene;gene=fepC;gene_biotype=protein_coding;locus_tag=C9F05_RS13750;old_locus_tag=C9F05_14145
NZ_PYKE01000213.1	Protein Homology	CDS	6791	7585	.	-	0	ID=cds-WP_127172957.1;Parent=gene-C9F05_RS13750;Dbxref=GenBank:WP_127172957.1;Name=WP_127172957.1;Ontology_term=GO:0005524;gbkey=CDS;gene=fepC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459582.1;locus_tag=C9F05_RS13750;product=iron-enterobactin ABC transporter ATP-binding protein;protein_id=WP_127172957.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	7582	8571	.	-	.	ID=gene-C9F05_RS13755;Name=fepG;gbkey=Gene;gene=fepG;gene_biotype=protein_coding;locus_tag=C9F05_RS13755;old_locus_tag=C9F05_14150
NZ_PYKE01000213.1	Protein Homology	CDS	7582	8571	.	-	0	ID=cds-WP_000480055.1;Parent=gene-C9F05_RS13755;Dbxref=GenBank:WP_000480055.1;Name=WP_000480055.1;Ontology_term=GO:0022857;gbkey=CDS;gene=fepG;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459583.1;locus_tag=C9F05_RS13755;product=iron-enterobactin ABC transporter permease;protein_id=WP_000480055.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	8571	9578	.	-	.	ID=gene-C9F05_RS13760;Name=fepD;gbkey=Gene;gene=fepD;gene_biotype=protein_coding;locus_tag=C9F05_RS13760;old_locus_tag=C9F05_14155
NZ_PYKE01000213.1	Protein Homology	CDS	8571	9578	.	-	0	ID=cds-WP_001277879.1;Parent=gene-C9F05_RS13760;Dbxref=GenBank:WP_001277879.1;Name=WP_001277879.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;gene=fepD;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459584.1;locus_tag=C9F05_RS13760;product=Fe(3+)-siderophore ABC transporter permease;protein_id=WP_001277879.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	9689	10933	.	+	.	ID=gene-C9F05_RS13765;Name=entS;gbkey=Gene;gene=entS;gene_biotype=protein_coding;locus_tag=C9F05_RS13765;old_locus_tag=C9F05_14160
NZ_PYKE01000213.1	Protein Homology	CDS	9689	10933	.	+	0	ID=cds-WP_001081663.1;Parent=gene-C9F05_RS13765;Dbxref=GenBank:WP_001081663.1;Name=WP_001081663.1;Ontology_term=GO:0042930,GO:0042931;gbkey=CDS;gene=entS;go_function=enterobactin transmembrane transporter activity|0042931||IEA;go_process=enterobactin transport|0042930||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459585.1;locus_tag=C9F05_RS13765;product=enterobactin transporter EntS;protein_id=WP_001081663.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	10996	11952	.	-	.	ID=gene-C9F05_RS13770;Name=fepB;gbkey=Gene;gene=fepB;gene_biotype=protein_coding;locus_tag=C9F05_RS13770;old_locus_tag=C9F05_14165
NZ_PYKE01000213.1	Protein Homology	CDS	10996	11952	.	-	0	ID=cds-WP_001238992.1;Parent=gene-C9F05_RS13770;Dbxref=GenBank:WP_001238992.1;Name=WP_001238992.1;gbkey=CDS;gene=fepB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459586.1;locus_tag=C9F05_RS13770;product=Fe2+-enterobactin ABC transporter substrate-binding protein;protein_id=WP_001238992.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	12261	13436	.	+	.	ID=gene-C9F05_RS13775;Name=entC;gbkey=Gene;gene=entC;gene_biotype=protein_coding;locus_tag=C9F05_RS13775;old_locus_tag=C9F05_14170
NZ_PYKE01000213.1	Protein Homology	CDS	12261	13436	.	+	0	ID=cds-WP_000367601.1;Parent=gene-C9F05_RS13775;Dbxref=GenBank:WP_000367601.1;Name=WP_000367601.1;Ontology_term=GO:0008909;gbkey=CDS;gene=entC;go_function=isochorismate synthase activity|0008909||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459587.1;locus_tag=C9F05_RS13775;product=isochorismate synthase EntC;protein_id=WP_000367601.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	13446	15056	.	+	.	ID=gene-C9F05_RS13780;Name=entE;gbkey=Gene;gene=entE;gene_biotype=protein_coding;locus_tag=C9F05_RS13780;old_locus_tag=C9F05_14175
NZ_PYKE01000213.1	Protein Homology	CDS	13446	15056	.	+	0	ID=cds-WP_023182270.1;Parent=gene-C9F05_RS13780;Dbxref=GenBank:WP_023182270.1;Name=WP_023182270.1;gbkey=CDS;gene=entE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459588.1;locus_tag=C9F05_RS13780;product=(2%2C3-dihydroxybenzoyl)adenylate synthase EntE;protein_id=WP_023182270.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	15070	15927	.	+	.	ID=gene-C9F05_RS13785;Name=C9F05_RS13785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13785;old_locus_tag=C9F05_14180
NZ_PYKE01000213.1	Protein Homology	CDS	15070	15927	.	+	0	ID=cds-WP_001007166.1;Parent=gene-C9F05_RS13785;Dbxref=GenBank:WP_001007166.1;Name=WP_001007166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459589.1;locus_tag=C9F05_RS13785;product=isochorismatase;protein_id=WP_001007166.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	15927	16682	.	+	.	ID=gene-C9F05_RS13790;Name=entA;gbkey=Gene;gene=entA;gene_biotype=protein_coding;locus_tag=C9F05_RS13790;old_locus_tag=C9F05_14185
NZ_PYKE01000213.1	Protein Homology	CDS	15927	16682	.	+	0	ID=cds-WP_135370367.1;Parent=gene-C9F05_RS13790;Dbxref=GenBank:WP_135370367.1;Name=WP_135370367.1;gbkey=CDS;gene=entA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459590.1;locus_tag=C9F05_RS13790;product=2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase EntA;protein_id=WP_135370367.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	16685	17098	.	+	.	ID=gene-C9F05_RS13795;Name=entH;gbkey=Gene;gene=entH;gene_biotype=protein_coding;locus_tag=C9F05_RS13795;old_locus_tag=C9F05_14190
NZ_PYKE01000213.1	Protein Homology	CDS	16685	17098	.	+	0	ID=cds-WP_000637966.1;Parent=gene-C9F05_RS13795;Dbxref=GenBank:WP_000637966.1;Name=WP_000637966.1;gbkey=CDS;gene=entH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459591.1;locus_tag=C9F05_RS13795;product=proofreading thioesterase EntH;protein_id=WP_000637966.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	17280	19385	.	+	.	ID=gene-C9F05_RS13800;Name=cstA;gbkey=Gene;gene=cstA;gene_biotype=protein_coding;locus_tag=C9F05_RS13800;old_locus_tag=C9F05_14195
NZ_PYKE01000213.1	Protein Homology	CDS	17280	19385	.	+	0	ID=cds-WP_135370368.1;Parent=gene-C9F05_RS13800;Dbxref=GenBank:WP_135370368.1;Name=WP_135370368.1;Ontology_term=GO:0009267;gbkey=CDS;gene=cstA;go_process=cellular response to starvation|0009267||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459592.1;locus_tag=C9F05_RS13800;product=pyruvate/proton symporter CstA;protein_id=WP_135370368.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	19449	19646	.	+	.	ID=gene-C9F05_RS13805;Name=C9F05_RS13805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13805;old_locus_tag=C9F05_14200
NZ_PYKE01000213.1	Protein Homology	CDS	19449	19646	.	+	0	ID=cds-WP_000460619.1;Parent=gene-C9F05_RS13805;Dbxref=GenBank:WP_000460619.1;Name=WP_000460619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904950.1;locus_tag=C9F05_RS13805;product=YbdD/YjiX family protein;protein_id=WP_000460619.1;transl_table=11
NZ_PYKE01000213.1	RefSeq	gene	19682	20489	.	-	.	ID=gene-C9F05_RS13810;Name=C9F05_RS13810;end_range=20489,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS13810;old_locus_tag=C9F05_14205;partial=true
NZ_PYKE01000213.1	Protein Homology	CDS	19682	20489	.	-	1	ID=cds-WP_135370369.1;Parent=gene-C9F05_RS13810;Dbxref=GenBank:WP_135370369.1;Name=WP_135370369.1;Ontology_term=GO:0016491,GO:0046872;end_range=20489,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459594.1;locus_tag=C9F05_RS13810;partial=true;product=oxidoreductase;protein_id=WP_135370369.1;transl_table=11
##sequence-region NZ_PYKE01000003.1 1 1118
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000003.1	RefSeq	region	1	1118	.	+	.	ID=NZ_PYKE01000003.1:1..1118;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000003.1	RefSeq	gene	1	600	.	-	.	ID=gene-C9F05_RS00015;Name=C9F05_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00015;old_locus_tag=C9F05_00015;partial=true;start_range=.,1
NZ_PYKE01000003.1	Protein Homology	CDS	1	600	.	-	0	ID=cds-WP_135369898.1;Parent=gene-C9F05_RS00015;Dbxref=GenBank:WP_135369898.1;Name=WP_135369898.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011233008.1;locus_tag=C9F05_RS00015;partial=true;product=glycosyltransferase family 2 protein;protein_id=WP_135369898.1;start_range=.,1;transl_table=11
NZ_PYKE01000003.1	RefSeq	gene	602	1118	.	-	.	ID=gene-C9F05_RS00020;Name=C9F05_RS00020;end_range=1118,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00020;old_locus_tag=C9F05_00020;partial=true
NZ_PYKE01000003.1	Protein Homology	CDS	602	1118	.	-	1	ID=cds-WP_135369899.1;Parent=gene-C9F05_RS00020;Dbxref=GenBank:WP_135369899.1;Name=WP_135369899.1;end_range=1118,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001228887.1;locus_tag=C9F05_RS00020;partial=true;product=MATE family efflux transporter;protein_id=WP_135369899.1;transl_table=11
##sequence-region NZ_PYKE01000008.1 1 20391
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000008.1	RefSeq	region	1	20391	.	+	.	ID=NZ_PYKE01000008.1:1..20391;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000008.1	RefSeq	gene	1	217	.	+	.	ID=gene-C9F05_RS23610;Name=C9F05_RS23610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23610;partial=true;start_range=.,1
NZ_PYKE01000008.1	GeneMarkS-2+	CDS	1	217	.	+	1	ID=cds-WP_206677757.1;Parent=gene-C9F05_RS23610;Dbxref=GenBank:WP_206677757.1;Name=WP_206677757.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS23610;partial=true;product=hypothetical protein;protein_id=WP_206677757.1;start_range=.,1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	147	767	.	+	.	ID=gene-C9F05_RS00390;Name=C9F05_RS00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00390;old_locus_tag=C9F05_00395
NZ_PYKE01000008.1	Protein Homology	CDS	147	767	.	+	0	ID=cds-WP_000877509.1;Parent=gene-C9F05_RS00390;Dbxref=GenBank:WP_000877509.1;Name=WP_000877509.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459103.1;locus_tag=C9F05_RS00390;product=YdcF family protein;protein_id=WP_000877509.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	811	3162	.	+	.	ID=gene-C9F05_RS00395;Name=polB;gbkey=Gene;gene=polB;gene_biotype=protein_coding;locus_tag=C9F05_RS00395;old_locus_tag=C9F05_00400
NZ_PYKE01000008.1	Protein Homology	CDS	811	3162	.	+	0	ID=cds-WP_000035715.1;Parent=gene-C9F05_RS00395;Dbxref=GenBank:WP_000035715.1;Name=WP_000035715.1;Ontology_term=GO:0003677,GO:0003887;gbkey=CDS;gene=polB;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459102.1;locus_tag=C9F05_RS00395;product=DNA polymerase II;protein_id=WP_000035715.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	3336	6242	.	+	.	ID=gene-C9F05_RS00400;Name=rapA;gbkey=Gene;gene=rapA;gene_biotype=protein_coding;locus_tag=C9F05_RS00400;old_locus_tag=C9F05_00405
NZ_PYKE01000008.1	Protein Homology	CDS	3336	6242	.	+	0	ID=cds-WP_001116966.1;Parent=gene-C9F05_RS00400;Dbxref=GenBank:WP_001116966.1;Name=WP_001116966.1;Ontology_term=GO:0006355,GO:0005524,GO:0016817,GO:0140658;gbkey=CDS;gene=rapA;go_function=ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides|0016817||IEA,ATP-dependent chromatin remodeler activity|0140658||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001117023.1;locus_tag=C9F05_RS00400;product=RNA polymerase-associated protein RapA;protein_id=WP_001116966.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	6254	6913	.	+	.	ID=gene-C9F05_RS00405;Name=rluA;gbkey=Gene;gene=rluA;gene_biotype=protein_coding;locus_tag=C9F05_RS00405;old_locus_tag=C9F05_00410
NZ_PYKE01000008.1	Protein Homology	CDS	6254	6913	.	+	0	ID=cds-WP_000525198.1;Parent=gene-C9F05_RS00405;Dbxref=GenBank:WP_000525198.1;Name=WP_000525198.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459100.1;locus_tag=C9F05_RS00405;product=bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA;protein_id=WP_000525198.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	7008	7820	.	-	.	ID=gene-C9F05_RS00410;Name=djlA;gbkey=Gene;gene=djlA;gene_biotype=protein_coding;locus_tag=C9F05_RS00410;old_locus_tag=C9F05_00415
NZ_PYKE01000008.1	Protein Homology	CDS	7008	7820	.	-	0	ID=cds-WP_001200595.1;Parent=gene-C9F05_RS00410;Dbxref=GenBank:WP_001200595.1;Name=WP_001200595.1;Ontology_term=GO:0051087;gbkey=CDS;gene=djlA;go_function=protein-folding chaperone binding|0051087||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459099.1;locus_tag=C9F05_RS00410;product=co-chaperone DjlA;protein_id=WP_001200595.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	8074	10434	.	+	.	ID=gene-C9F05_RS00415;Name=lptD;gbkey=Gene;gene=lptD;gene_biotype=protein_coding;locus_tag=C9F05_RS00415;old_locus_tag=C9F05_00420
NZ_PYKE01000008.1	Protein Homology	CDS	8074	10434	.	+	0	ID=cds-WP_135369916.1;Parent=gene-C9F05_RS00415;Dbxref=GenBank:WP_135369916.1;Name=WP_135369916.1;Ontology_term=GO:0015920,GO:0043165,GO:0019867;gbkey=CDS;gene=lptD;go_component=outer membrane|0019867||IEA;go_process=lipopolysaccharide transport|0015920||IEA,Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459098.1;locus_tag=C9F05_RS00415;product=LPS assembly protein LptD;protein_id=WP_135369916.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	10488	11774	.	+	.	ID=gene-C9F05_RS00420;Name=surA;gbkey=Gene;gene=surA;gene_biotype=protein_coding;locus_tag=C9F05_RS00420;old_locus_tag=C9F05_00425
NZ_PYKE01000008.1	Protein Homology	CDS	10488	11774	.	+	0	ID=cds-WP_000800482.1;Parent=gene-C9F05_RS00420;Dbxref=GenBank:WP_000800482.1;Name=WP_000800482.1;Ontology_term=GO:0006457,GO:0043165,GO:0050821,GO:0003755,GO:0042277,GO:0051082,GO:0030288;gbkey=CDS;gene=surA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,peptide binding|0042277||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA,Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA,protein stabilization|0050821||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459097.1;locus_tag=C9F05_RS00420;product=peptidylprolyl isomerase SurA;protein_id=WP_000800482.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	11774	12763	.	+	.	ID=gene-C9F05_RS00425;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=C9F05_RS00425;old_locus_tag=C9F05_00430
NZ_PYKE01000008.1	Protein Homology	CDS	11774	12763	.	+	0	ID=cds-WP_000093001.1;Parent=gene-C9F05_RS00425;Dbxref=GenBank:WP_000093001.1;Name=WP_000093001.1;Ontology_term=GO:0008615,GO:0050570;gbkey=CDS;gene=pdxA;go_function=4-hydroxythreonine-4-phosphate dehydrogenase activity|0050570||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459096.1;locus_tag=C9F05_RS00425;product=4-hydroxythreonine-4-phosphate dehydrogenase PdxA;protein_id=WP_000093001.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	12760	13581	.	+	.	ID=gene-C9F05_RS00430;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=C9F05_RS00430;old_locus_tag=C9F05_00435
NZ_PYKE01000008.1	Protein Homology	CDS	12760	13581	.	+	0	ID=cds-WP_001065397.1;Parent=gene-C9F05_RS00430;Dbxref=GenBank:WP_001065397.1;Name=WP_001065397.1;Ontology_term=GO:0000154,GO:0006364,GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;go_process=rRNA modification|0000154||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459095.1;locus_tag=C9F05_RS00430;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=WP_001065397.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	13584	13961	.	+	.	ID=gene-C9F05_RS00435;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=C9F05_RS00435;old_locus_tag=C9F05_00440
NZ_PYKE01000008.1	Protein Homology	CDS	13584	13961	.	+	0	ID=cds-WP_000610894.1;Parent=gene-C9F05_RS00435;Dbxref=GenBank:WP_000610894.1;Name=WP_000610894.1;gbkey=CDS;gene=apaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459094.1;locus_tag=C9F05_RS00435;product=Co2+/Mg2+ efflux protein ApaG;protein_id=WP_000610894.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	13972	14820	.	+	.	ID=gene-C9F05_RS00440;Name=apaH;gbkey=Gene;gene=apaH;gene_biotype=protein_coding;locus_tag=C9F05_RS00440;old_locus_tag=C9F05_00445
NZ_PYKE01000008.1	Protein Homology	CDS	13972	14820	.	+	0	ID=cds-WP_000257211.1;Parent=gene-C9F05_RS00440;Dbxref=GenBank:WP_000257211.1;Name=WP_000257211.1;Ontology_term=GO:0008803;gbkey=CDS;gene=apaH;go_function=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity|0008803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459093.1;locus_tag=C9F05_RS00440;product=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH;protein_id=WP_000257211.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	14926	15405	.	-	.	ID=gene-C9F05_RS00445;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;locus_tag=C9F05_RS00445;old_locus_tag=C9F05_00450
NZ_PYKE01000008.1	Protein Homology	CDS	14926	15405	.	-	0	ID=cds-WP_000624379.1;Parent=gene-C9F05_RS00445;Dbxref=GenBank:WP_000624379.1;Name=WP_000624379.1;Ontology_term=GO:0046654,GO:0004146;gbkey=CDS;gene=folA;go_function=dihydrofolate reductase activity|0004146||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456510.1;locus_tag=C9F05_RS00445;product=type 3 dihydrofolate reductase;protein_id=WP_000624379.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	15604	17466	.	-	.	ID=gene-C9F05_RS00450;Name=kefC;gbkey=Gene;gene=kefC;gene_biotype=protein_coding;locus_tag=C9F05_RS00450;old_locus_tag=C9F05_00460
NZ_PYKE01000008.1	Protein Homology	CDS	15604	17466	.	-	0	ID=cds-WP_135369917.1;Parent=gene-C9F05_RS00450;Dbxref=GenBank:WP_135369917.1;Name=WP_135369917.1;Ontology_term=GO:0006813,GO:0015503;gbkey=CDS;gene=kefC;go_function=glutathione-regulated potassium exporter activity|0015503||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459091.1;locus_tag=C9F05_RS00450;product=glutathione-regulated potassium-efflux system protein KefC;protein_id=WP_135369917.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	17459	17989	.	-	.	ID=gene-C9F05_RS00455;Name=kefF;gbkey=Gene;gene=kefF;gene_biotype=protein_coding;locus_tag=C9F05_RS00455;old_locus_tag=C9F05_00465
NZ_PYKE01000008.1	Protein Homology	CDS	17459	17989	.	-	0	ID=cds-WP_000600706.1;Parent=gene-C9F05_RS00455;Dbxref=GenBank:WP_000600706.1;Name=WP_000600706.1;Ontology_term=GO:0006813;gbkey=CDS;gene=kefF;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459090.1;locus_tag=C9F05_RS00455;product=glutathione-regulated potassium-efflux system oxidoreductase KefF;protein_id=WP_000600706.1;transl_table=11
NZ_PYKE01000008.1	RefSeq	pseudogene	18111	18191	.	+	.	ID=gene-C9F05_RS23720;Name=C9F05_RS23720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23720;old_locus_tag=C9F05_00470;partial=true;pseudo=true;start_range=.,18111
NZ_PYKE01000008.1	Protein Homology	CDS	18111	18191	.	+	0	ID=cds-C9F05_RS23720;Parent=gene-C9F05_RS23720;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459075.1;locus_tag=C9F05_RS23720;partial=true;product=hypothetical protein;pseudo=true;start_range=.,18111;transl_table=11
NZ_PYKE01000008.1	RefSeq	gene	18396	20285	.	-	.	ID=gene-C9F05_RS00460;Name=C9F05_RS00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS00460;old_locus_tag=C9F05_00475
NZ_PYKE01000008.1	Protein Homology	CDS	18396	20285	.	-	0	ID=cds-WP_135369918.1;Parent=gene-C9F05_RS00460;Dbxref=GenBank:WP_135369918.1;Name=WP_135369918.1;Ontology_term=GO:0008484;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459089.1;locus_tag=C9F05_RS00460;product=sulfatase-like hydrolase/transferase;protein_id=WP_135369918.1;transl_table=11
##sequence-region NZ_PYKE01000236.1 1 1103
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000236.1	RefSeq	region	1	1103	.	+	.	ID=NZ_PYKE01000236.1:1..1103;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000236.1	RefSeq	gene	1	969	.	+	.	ID=gene-C9F05_RS15385;Name=rfaJ;gbkey=Gene;gene=rfaJ;gene_biotype=protein_coding;locus_tag=C9F05_RS15385;old_locus_tag=C9F05_15820;partial=true;start_range=.,1
NZ_PYKE01000236.1	Protein Homology	CDS	1	969	.	+	0	ID=cds-WP_135370436.1;Parent=gene-C9F05_RS15385;Dbxref=GenBank:WP_135370436.1;Name=WP_135370436.1;gbkey=CDS;gene=rfaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462617.1;locus_tag=C9F05_RS15385;partial=true;product=lipopolysaccharide 1%2C2-glucosyltransferase RfaJ;protein_id=WP_135370436.1;start_range=.,1;transl_table=11
NZ_PYKE01000236.1	RefSeq	gene	992	1103	.	+	.	ID=gene-C9F05_RS15390;Name=C9F05_RS15390;end_range=1103,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS15390;old_locus_tag=C9F05_15825;partial=true
NZ_PYKE01000236.1	Protein Homology	CDS	992	1103	.	+	0	ID=cds-WP_217810227.1;Parent=gene-C9F05_RS15390;Dbxref=GenBank:WP_217810227.1;Name=WP_217810227.1;end_range=1103,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462616.1;locus_tag=C9F05_RS15390;partial=true;product=lipopolysaccharide core heptose(II) kinase RfaY;protein_id=WP_217810227.1;transl_table=11
##sequence-region NZ_PYKE01000318.1 1 1077
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000318.1	RefSeq	region	1	1077	.	+	.	ID=NZ_PYKE01000318.1:1..1077;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000318.1	RefSeq	gene	78	725	.	-	.	ID=gene-C9F05_RS21630;Name=narP;gbkey=Gene;gene=narP;gene_biotype=protein_coding;locus_tag=C9F05_RS21630;old_locus_tag=C9F05_22215
NZ_PYKE01000318.1	Protein Homology	CDS	78	725	.	-	0	ID=cds-WP_135370628.1;Parent=gene-C9F05_RS21630;Dbxref=GenBank:WP_135370628.1;Name=WP_135370628.1;gbkey=CDS;gene=narP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461189.1;locus_tag=C9F05_RS21630;product=nitrate/nitrite response regulator protein NarP;protein_id=WP_135370628.1;transl_table=11
##sequence-region NZ_PYKE01000073.1 1 1048
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000073.1	RefSeq	region	1	1048	.	+	.	ID=NZ_PYKE01000073.1:1..1048;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000073.1	RefSeq	gene	11	493	.	+	.	ID=gene-C9F05_RS04640;Name=C9F05_RS04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04640;old_locus_tag=C9F05_04705
NZ_PYKE01000073.1	Protein Homology	CDS	11	493	.	+	0	ID=cds-WP_135370064.1;Parent=gene-C9F05_RS04640;Dbxref=GenBank:WP_135370064.1;Name=WP_135370064.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747607.1;locus_tag=C9F05_RS04640;product=DUF4756 family protein;protein_id=WP_135370064.1;transl_table=11
NZ_PYKE01000073.1	RefSeq	gene	542	838	.	-	.	ID=gene-C9F05_RS04645;Name=C9F05_RS04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04645;old_locus_tag=C9F05_04710
NZ_PYKE01000073.1	Protein Homology	CDS	542	838	.	-	0	ID=cds-WP_135370063.1;Parent=gene-C9F05_RS04645;Dbxref=GenBank:WP_135370063.1;Name=WP_135370063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001091325.1;locus_tag=C9F05_RS04645;product=hypothetical protein;protein_id=WP_135370063.1;transl_table=11
##sequence-region NZ_PYKE01000223.1 1 1046
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000223.1	RefSeq	region	1	1046	.	+	.	ID=NZ_PYKE01000223.1:1..1046;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000223.1	RefSeq	gene	49	939	.	+	.	ID=gene-C9F05_RS14750;Name=C9F05_RS14750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14750;old_locus_tag=C9F05_15165
NZ_PYKE01000223.1	Protein Homology	CDS	49	939	.	+	0	ID=cds-WP_031605717.1;Parent=gene-C9F05_RS14750;Dbxref=GenBank:WP_031605717.1;Name=WP_031605717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418513.4;locus_tag=C9F05_RS14750;product=MurR/RpiR family transcriptional regulator;protein_id=WP_031605717.1;transl_table=11
##sequence-region NZ_PYKE01000084.1 1 20237
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000084.1	RefSeq	region	1	20237	.	+	.	ID=NZ_PYKE01000084.1:1..20237;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000084.1	RefSeq	gene	702	992	.	+	.	ID=gene-C9F05_RS05715;Name=srfN;gbkey=Gene;gene=srfN;gene_biotype=protein_coding;locus_tag=C9F05_RS05715;old_locus_tag=C9F05_05820
NZ_PYKE01000084.1	Protein Homology	CDS	702	992	.	+	0	ID=cds-WP_135370102.1;Parent=gene-C9F05_RS05715;Dbxref=GenBank:WP_135370102.1;Name=WP_135370102.1;gbkey=CDS;gene=srfN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459087.1;locus_tag=C9F05_RS05715;product=DUF1471 family virulence protein SrfN;protein_id=WP_135370102.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	1216	1632	.	-	.	ID=gene-C9F05_RS05720;Name=C9F05_RS05720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05720;old_locus_tag=C9F05_05825
NZ_PYKE01000084.1	Protein Homology	CDS	1216	1632	.	-	0	ID=cds-WP_135370099.1;Parent=gene-C9F05_RS05720;Dbxref=GenBank:WP_135370099.1;Name=WP_135370099.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459086.1;locus_tag=C9F05_RS05720;product=hypothetical protein;protein_id=WP_135370099.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	1912	2142	.	-	.	ID=gene-C9F05_RS05725;Name=C9F05_RS05725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05725;old_locus_tag=C9F05_05830
NZ_PYKE01000084.1	Protein Homology	CDS	1912	2142	.	-	0	ID=cds-WP_001172089.1;Parent=gene-C9F05_RS05725;Dbxref=GenBank:WP_001172089.1;Name=WP_001172089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459085.1;locus_tag=C9F05_RS05725;product=YgdI/YgdR family lipoprotein;protein_id=WP_001172089.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	2231	3571	.	-	.	ID=gene-C9F05_RS05730;Name=C9F05_RS05730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05730;old_locus_tag=C9F05_05835
NZ_PYKE01000084.1	Protein Homology	CDS	2231	3571	.	-	0	ID=cds-WP_001187057.1;Parent=gene-C9F05_RS05730;Dbxref=GenBank:WP_001187057.1;Name=WP_001187057.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459084.1;locus_tag=C9F05_RS05730;product=MFS transporter;protein_id=WP_001187057.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	3718	4005	.	-	.	ID=gene-C9F05_RS05735;Name=fixX;gbkey=Gene;gene=fixX;gene_biotype=protein_coding;locus_tag=C9F05_RS05735;old_locus_tag=C9F05_05840
NZ_PYKE01000084.1	Protein Homology	CDS	3718	4005	.	-	0	ID=cds-WP_000203736.1;Parent=gene-C9F05_RS05735;Dbxref=GenBank:WP_000203736.1;Name=WP_000203736.1;gbkey=CDS;gene=fixX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459083.1;locus_tag=C9F05_RS05735;product=ferredoxin-like protein FixX;protein_id=WP_000203736.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	4002	5288	.	-	.	ID=gene-C9F05_RS05740;Name=C9F05_RS05740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05740;old_locus_tag=C9F05_05845
NZ_PYKE01000084.1	Protein Homology	CDS	4002	5288	.	-	0	ID=cds-WP_023213706.1;Parent=gene-C9F05_RS05740;Dbxref=GenBank:WP_023213706.1;Name=WP_023213706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459082.1;locus_tag=C9F05_RS05740;product=FAD-dependent oxidoreductase;protein_id=WP_023213706.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	5338	6279	.	-	.	ID=gene-C9F05_RS05745;Name=C9F05_RS05745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05745;old_locus_tag=C9F05_05850
NZ_PYKE01000084.1	Protein Homology	CDS	5338	6279	.	-	0	ID=cds-WP_001032189.1;Parent=gene-C9F05_RS05745;Dbxref=GenBank:WP_001032189.1;Name=WP_001032189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459081.1;locus_tag=C9F05_RS05745;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=WP_001032189.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	6295	7065	.	-	.	ID=gene-C9F05_RS05750;Name=C9F05_RS05750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05750;old_locus_tag=C9F05_05855
NZ_PYKE01000084.1	Protein Homology	CDS	6295	7065	.	-	0	ID=cds-WP_000692190.1;Parent=gene-C9F05_RS05750;Dbxref=GenBank:WP_000692190.1;Name=WP_000692190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459080.1;locus_tag=C9F05_RS05750;product=electron transfer flavoprotein FixA;protein_id=WP_000692190.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	7546	9063	.	+	.	ID=gene-C9F05_RS05755;Name=caiT;gbkey=Gene;gene=caiT;gene_biotype=protein_coding;locus_tag=C9F05_RS05755;old_locus_tag=C9F05_05865
NZ_PYKE01000084.1	Protein Homology	CDS	7546	9063	.	+	0	ID=cds-WP_000787073.1;Parent=gene-C9F05_RS05755;Dbxref=GenBank:WP_000787073.1;Name=WP_000787073.1;gbkey=CDS;gene=caiT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459079.1;locus_tag=C9F05_RS05755;product=L-carnitine/gamma-butyrobetaine antiporter;protein_id=WP_000787073.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	9098	10240	.	+	.	ID=gene-C9F05_RS05760;Name=caiA;gbkey=Gene;gene=caiA;gene_biotype=protein_coding;locus_tag=C9F05_RS05760;old_locus_tag=C9F05_05870
NZ_PYKE01000084.1	Protein Homology	CDS	9098	10240	.	+	0	ID=cds-WP_000347134.1;Parent=gene-C9F05_RS05760;Dbxref=GenBank:WP_000347134.1;Name=WP_000347134.1;Ontology_term=GO:0009437,GO:0003995,GO:0016627;gbkey=CDS;gene=caiA;go_function=acyl-CoA dehydrogenase activity|0003995||IEA,oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124373.1;locus_tag=C9F05_RS05760;product=crotonobetainyl-CoA dehydrogenase;protein_id=WP_000347134.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	10352	11569	.	+	.	ID=gene-C9F05_RS05765;Name=caiB;gbkey=Gene;gene=caiB;gene_biotype=protein_coding;locus_tag=C9F05_RS05765;old_locus_tag=C9F05_05875
NZ_PYKE01000084.1	Protein Homology	CDS	10352	11569	.	+	0	ID=cds-WP_001016212.1;Parent=gene-C9F05_RS05765;Dbxref=GenBank:WP_001016212.1;Name=WP_001016212.1;Ontology_term=GO:0009437,GO:0016782;gbkey=CDS;gene=caiB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459077.1;locus_tag=C9F05_RS05765;product=L-carnitine CoA-transferase;protein_id=WP_001016212.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	11632	13185	.	+	.	ID=gene-C9F05_RS05770;Name=caiC;gbkey=Gene;gene=caiC;gene_biotype=protein_coding;locus_tag=C9F05_RS05770;old_locus_tag=C9F05_05880
NZ_PYKE01000084.1	Protein Homology	CDS	11632	13185	.	+	0	ID=cds-WP_135370100.1;Parent=gene-C9F05_RS05770;Dbxref=GenBank:WP_135370100.1;Name=WP_135370100.1;Ontology_term=GO:0009437,GO:0016405;gbkey=CDS;gene=caiC;go_function=CoA-ligase activity|0016405||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459076.1;locus_tag=C9F05_RS05770;product=crotonobetaine/carnitine-CoA ligase;protein_id=WP_135370100.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	13239	14024	.	+	.	ID=gene-C9F05_RS05775;Name=caiD;gbkey=Gene;gene=caiD;gene_biotype=protein_coding;locus_tag=C9F05_RS05775;old_locus_tag=C9F05_05885
NZ_PYKE01000084.1	Protein Homology	CDS	13239	14024	.	+	0	ID=cds-WP_000004383.1;Parent=gene-C9F05_RS05775;Dbxref=GenBank:WP_000004383.1;Name=WP_000004383.1;Ontology_term=GO:0016836;gbkey=CDS;gene=caiD;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459075.1;locus_tag=C9F05_RS05775;product=crotonobetainyl-CoA hydratase;protein_id=WP_000004383.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	14134	14730	.	+	.	ID=gene-C9F05_RS05780;Name=caiE;gbkey=Gene;gene=caiE;gene_biotype=protein_coding;locus_tag=C9F05_RS05780;old_locus_tag=C9F05_05890
NZ_PYKE01000084.1	Protein Homology	CDS	14134	14730	.	+	0	ID=cds-WP_000122864.1;Parent=gene-C9F05_RS05780;Dbxref=GenBank:WP_000122864.1;Name=WP_000122864.1;gbkey=CDS;gene=caiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459074.1;locus_tag=C9F05_RS05780;product=carnitine operon protein CaiE;protein_id=WP_000122864.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	14808	15203	.	-	.	ID=gene-C9F05_RS05785;Name=caiF;gbkey=Gene;gene=caiF;gene_biotype=protein_coding;locus_tag=C9F05_RS05785;old_locus_tag=C9F05_05895
NZ_PYKE01000084.1	Protein Homology	CDS	14808	15203	.	-	0	ID=cds-WP_000333324.1;Parent=gene-C9F05_RS05785;Dbxref=GenBank:WP_000333324.1;Name=WP_000333324.1;gbkey=CDS;gene=caiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459073.1;locus_tag=C9F05_RS05785;product=carnitine metabolism transcriptional regulator CaiF;protein_id=WP_000333324.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	15477	18704	.	-	.	ID=gene-C9F05_RS05790;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=C9F05_RS05790;old_locus_tag=C9F05_05900
NZ_PYKE01000084.1	Protein Homology	CDS	15477	18704	.	-	0	ID=cds-WP_135370101.1;Parent=gene-C9F05_RS05790;Dbxref=GenBank:WP_135370101.1;Name=WP_135370101.1;Ontology_term=GO:0008152,GO:0005524,GO:0046872;gbkey=CDS;gene=carB;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459072.1;locus_tag=C9F05_RS05790;product=carbamoyl-phosphate synthase large subunit;protein_id=WP_135370101.1;transl_table=11
NZ_PYKE01000084.1	RefSeq	gene	18723	19871	.	-	.	ID=gene-C9F05_RS05795;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=C9F05_RS05795;old_locus_tag=C9F05_05905
NZ_PYKE01000084.1	Protein Homology	CDS	18723	19871	.	-	0	ID=cds-WP_020839606.1;Parent=gene-C9F05_RS05795;Dbxref=GenBank:WP_020839606.1;Name=WP_020839606.1;Ontology_term=GO:0006207,GO:0006541,GO:0004088;gbkey=CDS;gene=carA;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459071.1;locus_tag=C9F05_RS05795;product=glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit;protein_id=WP_020839606.1;transl_table=11
##sequence-region NZ_PYKE01000051.1 1 1019
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000051.1	RefSeq	region	1	1019	.	+	.	ID=NZ_PYKE01000051.1:1..1019;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000051.1	RefSeq	gene	1	1019	.	+	.	ID=gene-C9F05_RS03225;Name=tuf;end_range=1019,.;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=C9F05_RS03225;old_locus_tag=C9F05_03275;partial=true;start_range=.,1
NZ_PYKE01000051.1	Protein Homology	CDS	1	1019	.	+	0	ID=cds-WP_001543627.1;Parent=gene-C9F05_RS03225;Dbxref=GenBank:WP_001543627.1;Name=WP_001543627.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;end_range=1019,.;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462349.1;locus_tag=C9F05_RS03225;partial=true;product=elongation factor Tu;protein_id=WP_001543627.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000128.1 1 20137
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000128.1	RefSeq	region	1	20137	.	+	.	ID=NZ_PYKE01000128.1:1..20137;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000128.1	RefSeq	gene	602	1003	.	+	.	ID=gene-C9F05_RS09240;Name=stpA;gbkey=Gene;gene=stpA;gene_biotype=protein_coding;locus_tag=C9F05_RS09240;old_locus_tag=C9F05_09485
NZ_PYKE01000128.1	Protein Homology	CDS	602	1003	.	+	0	ID=cds-WP_001051100.1;Parent=gene-C9F05_RS09240;Dbxref=GenBank:WP_001051100.1;Name=WP_001051100.1;gbkey=CDS;gene=stpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461725.1;locus_tag=C9F05_RS09240;product=DNA-binding protein StpA;protein_id=WP_001051100.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	1093	1272	.	-	.	ID=gene-C9F05_RS09245;Name=C9F05_RS09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09245;old_locus_tag=C9F05_09490
NZ_PYKE01000128.1	Protein Homology	CDS	1093	1272	.	-	0	ID=cds-WP_000494942.1;Parent=gene-C9F05_RS09245;Dbxref=GenBank:WP_000494942.1;Name=WP_000494942.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000494935.1;locus_tag=C9F05_RS09245;product=hypothetical protein;protein_id=WP_000494942.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	1351	1878	.	-	.	ID=gene-C9F05_RS09250;Name=C9F05_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09250;old_locus_tag=C9F05_09495
NZ_PYKE01000128.1	Protein Homology	CDS	1351	1878	.	-	0	ID=cds-WP_000022011.1;Parent=gene-C9F05_RS09250;Dbxref=GenBank:WP_000022011.1;Name=WP_000022011.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461724.1;locus_tag=C9F05_RS09250;product=rhodanese family protein;protein_id=WP_000022011.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	1888	2187	.	-	.	ID=gene-C9F05_RS09255;Name=C9F05_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09255;old_locus_tag=C9F05_09500
NZ_PYKE01000128.1	Protein Homology	CDS	1888	2187	.	-	0	ID=cds-WP_000137432.1;Parent=gene-C9F05_RS09255;Dbxref=GenBank:WP_000137432.1;Name=WP_000137432.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461723.1;locus_tag=C9F05_RS09255;product=ArsR/SmtB family transcription factor;protein_id=WP_000137432.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	2370	2528	.	+	.	ID=gene-C9F05_RS09260;Name=C9F05_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09260;old_locus_tag=C9F05_09505
NZ_PYKE01000128.1	Protein Homology	CDS	2370	2528	.	+	0	ID=cds-WP_000508175.1;Parent=gene-C9F05_RS09260;Dbxref=GenBank:WP_000508175.1;Name=WP_000508175.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461722.1;locus_tag=C9F05_RS09260;product=YqaE/Pmp3 family membrane protein;protein_id=WP_000508175.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	2628	3077	.	+	.	ID=gene-C9F05_RS09270;Name=lysM;gbkey=Gene;gene=lysM;gene_biotype=protein_coding;locus_tag=C9F05_RS09270;old_locus_tag=C9F05_09515
NZ_PYKE01000128.1	Protein Homology	CDS	2628	3077	.	+	0	ID=cds-WP_000522406.1;Parent=gene-C9F05_RS09270;Dbxref=GenBank:WP_000522406.1;Name=WP_000522406.1;gbkey=CDS;gene=lysM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461721.1;locus_tag=C9F05_RS09270;product=peptidoglycan-binding protein LysM;protein_id=WP_000522406.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	3099	3776	.	-	.	ID=gene-C9F05_RS09275;Name=csiR;gbkey=Gene;gene=csiR;gene_biotype=protein_coding;locus_tag=C9F05_RS09275;old_locus_tag=C9F05_09520
NZ_PYKE01000128.1	Protein Homology	CDS	3099	3776	.	-	0	ID=cds-WP_000126152.1;Parent=gene-C9F05_RS09275;Dbxref=GenBank:WP_000126152.1;Name=WP_000126152.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=csiR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461720.1;locus_tag=C9F05_RS09275;product=DNA-binding transcriptional regulator CsiR;protein_id=WP_000126152.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	3818	5218	.	-	.	ID=gene-C9F05_RS09280;Name=gabP;gbkey=Gene;gene=gabP;gene_biotype=protein_coding;locus_tag=C9F05_RS09280;old_locus_tag=C9F05_09525
NZ_PYKE01000128.1	Protein Homology	CDS	3818	5218	.	-	0	ID=cds-WP_000531282.1;Parent=gene-C9F05_RS09280;Dbxref=GenBank:WP_000531282.1;Name=WP_000531282.1;Ontology_term=GO:0006865,GO:0015185,GO:0016020;gbkey=CDS;gene=gabP;go_component=membrane|0016020||IEA;go_function=gamma-aminobutyric acid transmembrane transporter activity|0015185||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461719.1;locus_tag=C9F05_RS09280;product=GABA permease;protein_id=WP_000531282.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	5348	6631	.	-	.	ID=gene-C9F05_RS09285;Name=gabT;gbkey=Gene;gene=gabT;gene_biotype=protein_coding;locus_tag=C9F05_RS09285;old_locus_tag=C9F05_09530
NZ_PYKE01000128.1	Protein Homology	CDS	5348	6631	.	-	0	ID=cds-WP_135370200.1;Parent=gene-C9F05_RS09285;Dbxref=GenBank:WP_135370200.1;Name=WP_135370200.1;Ontology_term=GO:0009448,GO:0030170;gbkey=CDS;gene=gabT;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=gamma-aminobutyric acid metabolic process|0009448||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461718.1;locus_tag=C9F05_RS09285;product=4-aminobutyrate--2-oxoglutarate transaminase;protein_id=WP_135370200.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	6646	8094	.	-	.	ID=gene-C9F05_RS09290;Name=gabD;gbkey=Gene;gene=gabD;gene_biotype=protein_coding;locus_tag=C9F05_RS09290;old_locus_tag=C9F05_09535
NZ_PYKE01000128.1	Protein Homology	CDS	6646	8094	.	-	0	ID=cds-WP_080204039.1;Parent=gene-C9F05_RS09290;Dbxref=GenBank:WP_080204039.1;Name=WP_080204039.1;Ontology_term=GO:0009450,GO:0009013;gbkey=CDS;gene=gabD;go_function=succinate-semialdehyde dehydrogenase [NAD(P)+] activity|0009013||IEA;go_process=gamma-aminobutyric acid catabolic process|0009450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461717.1;locus_tag=C9F05_RS09290;product=NADP-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_080204039.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	8116	9384	.	-	.	ID=gene-C9F05_RS09295;Name=lhgO;gbkey=Gene;gene=lhgO;gene_biotype=protein_coding;locus_tag=C9F05_RS09295;old_locus_tag=C9F05_09540
NZ_PYKE01000128.1	Protein Homology	CDS	8116	9384	.	-	0	ID=cds-WP_135370201.1;Parent=gene-C9F05_RS09295;Dbxref=GenBank:WP_135370201.1;Name=WP_135370201.1;Ontology_term=GO:0016491;gbkey=CDS;gene=lhgO;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461716.1;locus_tag=C9F05_RS09295;product=L-2-hydroxyglutarate oxidase;protein_id=WP_135370201.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	9410	10387	.	-	.	ID=gene-C9F05_RS09300;Name=glaH;gbkey=Gene;gene=glaH;gene_biotype=protein_coding;locus_tag=C9F05_RS09300;old_locus_tag=C9F05_09545
NZ_PYKE01000128.1	Protein Homology	CDS	9410	10387	.	-	0	ID=cds-WP_135370202.1;Parent=gene-C9F05_RS09300;Dbxref=GenBank:WP_135370202.1;Name=WP_135370202.1;Ontology_term=GO:0050498;gbkey=CDS;gene=glaH;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C with 2-oxoglutarate as one donor%2C and the other dehydrogenated|0050498||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417145.4;locus_tag=C9F05_RS09300;product=glutarate dioxygenase GlaH;protein_id=WP_135370202.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	10690	12204	.	-	.	ID=gene-C9F05_RS09305;Name=C9F05_RS09305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09305;old_locus_tag=C9F05_09550
NZ_PYKE01000128.1	Protein Homology	CDS	10690	12204	.	-	0	ID=cds-WP_000382035.1;Parent=gene-C9F05_RS09305;Dbxref=GenBank:WP_000382035.1;Name=WP_000382035.1;Ontology_term=GO:0006810,GO:0042597;gbkey=CDS;go_component=periplasmic space|0042597||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461714.1;locus_tag=C9F05_RS09305;product=tripartite tricarboxylate transporter permease;protein_id=WP_000382035.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	12215	12649	.	-	.	ID=gene-C9F05_RS09310;Name=C9F05_RS09310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09310;old_locus_tag=C9F05_09555
NZ_PYKE01000128.1	Protein Homology	CDS	12215	12649	.	-	0	ID=cds-WP_001574835.1;Parent=gene-C9F05_RS09310;Dbxref=GenBank:WP_001574835.1;Name=WP_001574835.1;Ontology_term=GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461713.3;locus_tag=C9F05_RS09310;product=tripartite tricarboxylate transporter TctB family protein;protein_id=WP_001574835.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	12661	13638	.	-	.	ID=gene-C9F05_RS09315;Name=C9F05_RS09315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09315;old_locus_tag=C9F05_09560
NZ_PYKE01000128.1	Protein Homology	CDS	12661	13638	.	-	0	ID=cds-WP_000744416.1;Parent=gene-C9F05_RS09315;Dbxref=GenBank:WP_000744416.1;Name=WP_000744416.1;Ontology_term=GO:0042597;gbkey=CDS;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461712.1;locus_tag=C9F05_RS09315;product=Bug family tripartite tricarboxylate transporter substrate binding protein;protein_id=WP_000744416.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	13793	14467	.	+	.	ID=gene-C9F05_RS09320;Name=tctD;gbkey=Gene;gene=tctD;gene_biotype=protein_coding;locus_tag=C9F05_RS09320;old_locus_tag=C9F05_09565
NZ_PYKE01000128.1	Protein Homology	CDS	13793	14467	.	+	0	ID=cds-WP_001237934.1;Parent=gene-C9F05_RS09320;Dbxref=GenBank:WP_001237934.1;Name=WP_001237934.1;gbkey=CDS;gene=tctD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461711.1;locus_tag=C9F05_RS09320;product=transcriptional regulator TctD;protein_id=WP_001237934.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	14454	15869	.	+	.	ID=gene-C9F05_RS09325;Name=C9F05_RS09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09325;old_locus_tag=C9F05_09570
NZ_PYKE01000128.1	Protein Homology	CDS	14454	15869	.	+	0	ID=cds-WP_000872338.1;Parent=gene-C9F05_RS09325;Dbxref=GenBank:WP_000872338.1;Name=WP_000872338.1;Ontology_term=GO:0000160,GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461710.1;locus_tag=C9F05_RS09325;product=sensor histidine kinase;protein_id=WP_000872338.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	16002	17015	.	+	.	ID=gene-C9F05_RS09330;Name=C9F05_RS09330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09330;old_locus_tag=C9F05_09575
NZ_PYKE01000128.1	Protein Homology	CDS	16002	17015	.	+	0	ID=cds-WP_135370203.1;Parent=gene-C9F05_RS09330;Dbxref=GenBank:WP_135370203.1;Name=WP_135370203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461709.1;locus_tag=C9F05_RS09330;product=HoxN/HupN/NixA family nickel/cobalt transporter;protein_id=WP_135370203.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	17737	18633	.	-	.	ID=gene-C9F05_RS09335;Name=C9F05_RS09335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09335;old_locus_tag=C9F05_09580
NZ_PYKE01000128.1	Protein Homology	CDS	17737	18633	.	-	0	ID=cds-WP_135370204.1;Parent=gene-C9F05_RS09335;Dbxref=GenBank:WP_135370204.1;Name=WP_135370204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461708.1;locus_tag=C9F05_RS09335;product=antimicrobial resistance protein Mig-14;protein_id=WP_135370204.1;transl_table=11
NZ_PYKE01000128.1	RefSeq	gene	18927	19856	.	-	.	ID=gene-C9F05_RS09345;Name=C9F05_RS09345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09345;old_locus_tag=C9F05_09590
NZ_PYKE01000128.1	Protein Homology	CDS	18927	19856	.	-	0	ID=cds-WP_135370205.1;Parent=gene-C9F05_RS09345;Dbxref=GenBank:WP_135370205.1;Name=WP_135370205.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461707.1;locus_tag=C9F05_RS09345;product=VirK family antimicrobial peptide resistance protein;protein_id=WP_135370205.1;transl_table=11
##sequence-region NZ_PYKE01000135.1 1 61313
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000135.1	RefSeq	region	1	61313	.	+	.	ID=NZ_PYKE01000135.1:1..61313;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000135.1	RefSeq	gene	171	1175	.	-	.	ID=gene-C9F05_RS09785;Name=foxR;gbkey=Gene;gene=foxR;gene_biotype=protein_coding;locus_tag=C9F05_RS09785;old_locus_tag=C9F05_10030
NZ_PYKE01000135.1	Protein Homology	CDS	171	1175	.	-	0	ID=cds-WP_135370225.1;Parent=gene-C9F05_RS09785;Dbxref=GenBank:WP_135370225.1;Name=WP_135370225.1;gbkey=CDS;gene=foxR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459358.1;locus_tag=C9F05_RS09785;product=ferrioxamine uptake transcriptional regulator FoxR;protein_id=WP_135370225.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	pseudogene	1271	1463	.	-	.	ID=gene-C9F05_RS23790;Name=C9F05_RS23790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23790;pseudo=true
NZ_PYKE01000135.1	Protein Homology	CDS	1271	1463	.	-	0	ID=cds-C9F05_RS23790;Parent=gene-C9F05_RS23790;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459357.3;locus_tag=C9F05_RS23790;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	1382	1567	.	-	.	ID=gene-C9F05_RS24015;Name=C9F05_RS24015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS24015;old_locus_tag=C9F05_10035
NZ_PYKE01000135.1	Protein Homology	CDS	1382	1567	.	-	0	ID=cds-WP_305954967.1;Parent=gene-C9F05_RS24015;Dbxref=GenBank:WP_305954967.1;Name=WP_305954967.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022085.6;locus_tag=C9F05_RS24015;product=DUF2474 domain-containing protein;protein_id=WP_305954967.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	1513	2523	.	-	.	ID=gene-C9F05_RS09795;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=C9F05_RS09795;old_locus_tag=C9F05_10040
NZ_PYKE01000135.1	Protein Homology	CDS	1513	2523	.	-	0	ID=cds-WP_000151047.1;Parent=gene-C9F05_RS09795;Dbxref=GenBank:WP_000151047.1;Name=WP_000151047.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydB;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459356.1;locus_tag=C9F05_RS09795;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_000151047.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	2520	3923	.	-	.	ID=gene-C9F05_RS09800;Name=C9F05_RS09800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09800;old_locus_tag=C9F05_10045
NZ_PYKE01000135.1	Protein Homology	CDS	2520	3923	.	-	0	ID=cds-WP_000393711.1;Parent=gene-C9F05_RS09800;Dbxref=GenBank:WP_000393711.1;Name=WP_000393711.1;Ontology_term=GO:0009055,GO:0046872,GO:0016020,GO:0070069;gbkey=CDS;go_component=membrane|0016020||IEA,cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459355.1;locus_tag=C9F05_RS09800;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_000393711.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	4040	4141	.	-	.	ID=gene-C9F05_RS09805;Name=ssaA;gbkey=Gene;gene=ssaA;gene_biotype=protein_coding;locus_tag=C9F05_RS09805;old_locus_tag=C9F05_10050
NZ_PYKE01000135.1	Protein Homology	CDS	4040	4141	.	-	0	ID=cds-WP_000934834.1;Parent=gene-C9F05_RS09805;Dbxref=GenBank:WP_000934834.1;Name=WP_000934834.1;gbkey=CDS;gene=ssaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459354.1;locus_tag=C9F05_RS09805;product=small effector SsaA;protein_id=WP_000934834.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	4418	7390	.	-	.	ID=gene-C9F05_RS09810;Name=C9F05_RS09810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09810;old_locus_tag=C9F05_10055
NZ_PYKE01000135.1	Protein Homology	CDS	4418	7390	.	-	0	ID=cds-WP_135370233.1;Parent=gene-C9F05_RS09810;Dbxref=GenBank:WP_135370233.1;Name=WP_135370233.1;Ontology_term=GO:0003677,GO:0016788;gbkey=CDS;go_function=DNA binding|0003677||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459353.3;locus_tag=C9F05_RS09810;product=type III restriction-modification system endonuclease;protein_id=WP_135370233.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	7400	9358	.	-	.	ID=gene-C9F05_RS09815;Name=C9F05_RS09815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09815;old_locus_tag=C9F05_10060
NZ_PYKE01000135.1	Protein Homology	CDS	7400	9358	.	-	0	ID=cds-WP_023210782.1;Parent=gene-C9F05_RS09815;Dbxref=GenBank:WP_023210782.1;Name=WP_023210782.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459352.1;locus_tag=C9F05_RS09815;product=site-specific DNA-methyltransferase;protein_id=WP_023210782.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	9547	10800	.	-	.	ID=gene-C9F05_RS09820;Name=C9F05_RS09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09820;old_locus_tag=C9F05_10065
NZ_PYKE01000135.1	Protein Homology	CDS	9547	10800	.	-	0	ID=cds-WP_000288503.1;Parent=gene-C9F05_RS09820;Dbxref=GenBank:WP_000288503.1;Name=WP_000288503.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459351.1;locus_tag=C9F05_RS09820;product=MFS transporter;protein_id=WP_000288503.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	11092	11286	.	-	.	ID=gene-C9F05_RS09825;Name=golB;gbkey=Gene;gene=golB;gene_biotype=protein_coding;locus_tag=C9F05_RS09825;old_locus_tag=C9F05_10070
NZ_PYKE01000135.1	Protein Homology	CDS	11092	11286	.	-	0	ID=cds-WP_001159470.1;Parent=gene-C9F05_RS09825;Dbxref=GenBank:WP_001159470.1;Name=WP_001159470.1;gbkey=CDS;gene=golB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459350.1;locus_tag=C9F05_RS09825;product=gold resistance metallochaperone GolB;protein_id=WP_001159470.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	11364	11828	.	-	.	ID=gene-C9F05_RS09830;Name=golS;gbkey=Gene;gene=golS;gene_biotype=protein_coding;locus_tag=C9F05_RS09830;old_locus_tag=C9F05_10075
NZ_PYKE01000135.1	Protein Homology	CDS	11364	11828	.	-	0	ID=cds-WP_001020583.1;Parent=gene-C9F05_RS09830;Dbxref=GenBank:WP_001020583.1;Name=WP_001020583.1;gbkey=CDS;gene=golS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459349.1;locus_tag=C9F05_RS09830;product=Au(I) sensor transcriptional regulator GolS;protein_id=WP_001020583.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	11825	14128	.	-	.	ID=gene-C9F05_RS09835;Name=golT;gbkey=Gene;gene=golT;gene_biotype=protein_coding;locus_tag=C9F05_RS09835;old_locus_tag=C9F05_10080
NZ_PYKE01000135.1	Protein Homology	CDS	11825	14128	.	-	0	ID=cds-WP_135370226.1;Parent=gene-C9F05_RS09835;Dbxref=GenBank:WP_135370226.1;Name=WP_135370226.1;gbkey=CDS;gene=golT;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000083318.1;locus_tag=C9F05_RS09835;product=gold/copper-translocating P-type ATPase GolT;protein_id=WP_135370226.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	14405	15631	.	+	.	ID=gene-C9F05_RS09840;Name=mdsA;gbkey=Gene;gene=mdsA;gene_biotype=protein_coding;locus_tag=C9F05_RS09840;old_locus_tag=C9F05_10085
NZ_PYKE01000135.1	Protein Homology	CDS	14405	15631	.	+	0	ID=cds-WP_001254850.1;Parent=gene-C9F05_RS09840;Dbxref=GenBank:WP_001254850.1;Name=WP_001254850.1;gbkey=CDS;gene=mdsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459347.3;locus_tag=C9F05_RS09840;product=multidrug efflux RND transporter periplasmic adaptor subunit MdsA;protein_id=WP_001254850.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	15628	18795	.	+	.	ID=gene-C9F05_RS09845;Name=mdsB;gbkey=Gene;gene=mdsB;gene_biotype=protein_coding;locus_tag=C9F05_RS09845;old_locus_tag=C9F05_10090
NZ_PYKE01000135.1	Protein Homology	CDS	15628	18795	.	+	0	ID=cds-WP_000673146.1;Parent=gene-C9F05_RS09845;Dbxref=GenBank:WP_000673146.1;Name=WP_000673146.1;gbkey=CDS;gene=mdsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459346.1;locus_tag=C9F05_RS09845;product=multidrug efflux RND transporter permease subunit MdsB;protein_id=WP_000673146.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	18812	20269	.	+	.	ID=gene-C9F05_RS09850;Name=mdsC;gbkey=Gene;gene=mdsC;gene_biotype=protein_coding;locus_tag=C9F05_RS09850;old_locus_tag=C9F05_10095
NZ_PYKE01000135.1	Protein Homology	CDS	18812	20269	.	+	0	ID=cds-WP_001543180.1;Parent=gene-C9F05_RS09850;Dbxref=GenBank:WP_001543180.1;Name=WP_001543180.1;gbkey=CDS;gene=mdsC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521068.1;locus_tag=C9F05_RS09850;product=multidrug efflux transporter outer membrane subunit MdsC;protein_id=WP_001543180.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	20339	20698	.	-	.	ID=gene-C9F05_RS09855;Name=C9F05_RS09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09855;old_locus_tag=C9F05_10100
NZ_PYKE01000135.1	Protein Homology	CDS	20339	20698	.	-	0	ID=cds-WP_000722978.1;Parent=gene-C9F05_RS09855;Dbxref=GenBank:WP_000722978.1;Name=WP_000722978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459344.1;locus_tag=C9F05_RS09855;product=DUF4156 domain-containing protein;protein_id=WP_000722978.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	20756	20980	.	-	.	ID=gene-C9F05_RS09860;Name=C9F05_RS09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09860;old_locus_tag=C9F05_10105
NZ_PYKE01000135.1	Protein Homology	CDS	20756	20980	.	-	0	ID=cds-WP_000737125.1;Parent=gene-C9F05_RS09860;Dbxref=GenBank:WP_000737125.1;Name=WP_000737125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459343.1;locus_tag=C9F05_RS09860;product=membrane protein;protein_id=WP_000737125.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	20991	21632	.	-	.	ID=gene-C9F05_RS09865;Name=C9F05_RS09865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09865;old_locus_tag=C9F05_10110
NZ_PYKE01000135.1	Protein Homology	CDS	20991	21632	.	-	0	ID=cds-WP_135370227.1;Parent=gene-C9F05_RS09865;Dbxref=GenBank:WP_135370227.1;Name=WP_135370227.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459342.1;locus_tag=C9F05_RS09865;product=helix-turn-helix transcriptional regulator;protein_id=WP_135370227.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	21776	22300	.	-	.	ID=gene-C9F05_RS09870;Name=C9F05_RS09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09870;old_locus_tag=C9F05_10115
NZ_PYKE01000135.1	Protein Homology	CDS	21776	22300	.	-	0	ID=cds-WP_000830239.1;Parent=gene-C9F05_RS09870;Dbxref=GenBank:WP_000830239.1;Name=WP_000830239.1;Ontology_term=GO:0044384;gbkey=CDS;go_component=host outer membrane|0044384||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459341.1;locus_tag=C9F05_RS09870;product=Ail/Lom family outer membrane beta-barrel protein;protein_id=WP_000830239.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	22700	23188	.	-	.	ID=gene-C9F05_RS09875;Name=C9F05_RS09875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09875;old_locus_tag=C9F05_10120
NZ_PYKE01000135.1	Protein Homology	CDS	22700	23188	.	-	0	ID=cds-WP_000545419.1;Parent=gene-C9F05_RS09875;Dbxref=GenBank:WP_000545419.1;Name=WP_000545419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459340.1;locus_tag=C9F05_RS09875;product=hypothetical protein;protein_id=WP_000545419.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	23161	23904	.	-	.	ID=gene-C9F05_RS09880;Name=C9F05_RS09880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09880;old_locus_tag=C9F05_10125
NZ_PYKE01000135.1	Protein Homology	CDS	23161	23904	.	-	0	ID=cds-WP_000081377.1;Parent=gene-C9F05_RS09880;Dbxref=GenBank:WP_000081377.1;Name=WP_000081377.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459339.1;locus_tag=C9F05_RS09880;product=transcriptional regulator;protein_id=WP_000081377.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	24004	25578	.	-	.	ID=gene-C9F05_RS09885;Name=C9F05_RS09885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09885;old_locus_tag=C9F05_10130
NZ_PYKE01000135.1	Protein Homology	CDS	24004	25578	.	-	0	ID=cds-WP_080110562.1;Parent=gene-C9F05_RS09885;Dbxref=GenBank:WP_080110562.1;Name=WP_080110562.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459338.1;locus_tag=C9F05_RS09885;product=EAL domain-containing protein;protein_id=WP_080110562.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	pseudogene	26080	26380	.	-	.	ID=gene-C9F05_RS09890;Name=C9F05_RS09890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS09890;old_locus_tag=C9F05_10140;pseudo=true
NZ_PYKE01000135.1	Protein Homology	CDS	26080	26380	.	-	0	ID=cds-C9F05_RS09890;Parent=gene-C9F05_RS09890;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459337.1;locus_tag=C9F05_RS09890;product=hypothetical protein;pseudo=true;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	26353	27087	.	-	.	ID=gene-C9F05_RS09895;Name=C9F05_RS09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09895;old_locus_tag=C9F05_10145
NZ_PYKE01000135.1	Protein Homology	CDS	26353	27087	.	-	0	ID=cds-WP_001005859.1;Parent=gene-C9F05_RS09895;Dbxref=GenBank:WP_001005859.1;Name=WP_001005859.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001005860.1;locus_tag=C9F05_RS09895;product=winged helix-turn-helix domain-containing protein;protein_id=WP_001005859.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	27751	28287	.	+	.	ID=gene-C9F05_RS09900;Name=C9F05_RS09900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09900;old_locus_tag=C9F05_10155
NZ_PYKE01000135.1	Protein Homology	CDS	27751	28287	.	+	0	ID=cds-WP_000062035.1;Parent=gene-C9F05_RS09900;Dbxref=GenBank:WP_000062035.1;Name=WP_000062035.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459335.1;locus_tag=C9F05_RS09900;product=fimbrial protein;protein_id=WP_000062035.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	28349	29110	.	+	.	ID=gene-C9F05_RS09905;Name=stbB;gbkey=Gene;gene=stbB;gene_biotype=protein_coding;locus_tag=C9F05_RS09905;old_locus_tag=C9F05_10160
NZ_PYKE01000135.1	Protein Homology	CDS	28349	29110	.	+	0	ID=cds-WP_000781485.1;Parent=gene-C9F05_RS09905;Dbxref=GenBank:WP_000781485.1;Name=WP_000781485.1;gbkey=CDS;gene=stbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459334.1;locus_tag=C9F05_RS09905;product=fimbrial biogenesis chaperone StbB;protein_id=WP_000781485.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	29094	31655	.	+	.	ID=gene-C9F05_RS09910;Name=C9F05_RS09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09910;old_locus_tag=C9F05_10165
NZ_PYKE01000135.1	Protein Homology	CDS	29094	31655	.	+	0	ID=cds-WP_135370228.1;Parent=gene-C9F05_RS09910;Dbxref=GenBank:WP_135370228.1;Name=WP_135370228.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459333.1;locus_tag=C9F05_RS09910;product=fimbrial outer membrane usher protein;protein_id=WP_135370228.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	31660	32985	.	+	.	ID=gene-C9F05_RS09915;Name=stbD;gbkey=Gene;gene=stbD;gene_biotype=protein_coding;locus_tag=C9F05_RS09915;old_locus_tag=C9F05_10170
NZ_PYKE01000135.1	Protein Homology	CDS	31660	32985	.	+	0	ID=cds-WP_023221527.1;Parent=gene-C9F05_RS09915;Dbxref=GenBank:WP_023221527.1;Name=WP_023221527.1;gbkey=CDS;gene=stbD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459332.1;locus_tag=C9F05_RS09915;product=fimbrial usher protein StbD;protein_id=WP_023221527.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	32951	33709	.	+	.	ID=gene-C9F05_RS09920;Name=stbE;gbkey=Gene;gene=stbE;gene_biotype=protein_coding;locus_tag=C9F05_RS09920;old_locus_tag=C9F05_10175
NZ_PYKE01000135.1	Protein Homology	CDS	32951	33709	.	+	0	ID=cds-WP_001616202.1;Parent=gene-C9F05_RS09920;Dbxref=GenBank:WP_001616202.1;Name=WP_001616202.1;gbkey=CDS;gene=stbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459331.1;locus_tag=C9F05_RS09920;product=fimbrial biogenesis chaperone StbE;protein_id=WP_001616202.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	33756	34154	.	-	.	ID=gene-C9F05_RS09925;Name=C9F05_RS09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09925;old_locus_tag=C9F05_10180
NZ_PYKE01000135.1	Protein Homology	CDS	33756	34154	.	-	0	ID=cds-WP_135370229.1;Parent=gene-C9F05_RS09925;Dbxref=GenBank:WP_135370229.1;Name=WP_135370229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459330.1;locus_tag=C9F05_RS09925;product=hypothetical protein;protein_id=WP_135370229.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	34845	35117	.	+	.	ID=gene-C9F05_RS09930;Name=C9F05_RS09930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09930;old_locus_tag=C9F05_10185
NZ_PYKE01000135.1	Protein Homology	CDS	34845	35117	.	+	0	ID=cds-WP_001675688.1;Parent=gene-C9F05_RS09930;Dbxref=GenBank:WP_001675688.1;Name=WP_001675688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459329.1;locus_tag=C9F05_RS09930;product=hypothetical protein;protein_id=WP_001675688.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	35062	36027	.	-	.	ID=gene-C9F05_RS09935;Name=C9F05_RS09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09935;old_locus_tag=C9F05_10190
NZ_PYKE01000135.1	Protein Homology	CDS	35062	36027	.	-	0	ID=cds-WP_000859023.1;Parent=gene-C9F05_RS09935;Dbxref=GenBank:WP_000859023.1;Name=WP_000859023.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459328.1;locus_tag=C9F05_RS09935;product=LysR family transcriptional regulator;protein_id=WP_000859023.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	36061	36975	.	-	.	ID=gene-C9F05_RS09940;Name=C9F05_RS09940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09940;old_locus_tag=C9F05_10195
NZ_PYKE01000135.1	Protein Homology	CDS	36061	36975	.	-	0	ID=cds-WP_000105593.1;Parent=gene-C9F05_RS09940;Dbxref=GenBank:WP_000105593.1;Name=WP_000105593.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459327.1;locus_tag=C9F05_RS09940;product=alpha/beta fold hydrolase;protein_id=WP_000105593.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	36975	37853	.	-	.	ID=gene-C9F05_RS09945;Name=C9F05_RS09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09945;old_locus_tag=C9F05_10200
NZ_PYKE01000135.1	Protein Homology	CDS	36975	37853	.	-	0	ID=cds-WP_135370230.1;Parent=gene-C9F05_RS09945;Dbxref=GenBank:WP_135370230.1;Name=WP_135370230.1;Ontology_term=GO:0003824,GO:0016787;gbkey=CDS;go_function=catalytic activity|0003824||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459326.1;locus_tag=C9F05_RS09945;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_135370230.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	37868	38494	.	-	.	ID=gene-C9F05_RS09950;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=C9F05_RS09950;old_locus_tag=C9F05_10205
NZ_PYKE01000135.1	Protein Homology	CDS	37868	38494	.	-	0	ID=cds-WP_000379343.1;Parent=gene-C9F05_RS09950;Dbxref=GenBank:WP_000379343.1;Name=WP_000379343.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459325.1;locus_tag=C9F05_RS09950;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_000379343.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	38496	39917	.	-	.	ID=gene-C9F05_RS09955;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=C9F05_RS09955;old_locus_tag=C9F05_10210
NZ_PYKE01000135.1	Protein Homology	CDS	38496	39917	.	-	0	ID=cds-WP_135370231.1;Parent=gene-C9F05_RS09955;Dbxref=GenBank:WP_135370231.1;Name=WP_135370231.1;Ontology_term=GO:0009098,GO:0003861,GO:0051539,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459324.1;locus_tag=C9F05_RS09955;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_135370231.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	40049	41287	.	-	.	ID=gene-C9F05_RS09960;Name=C9F05_RS09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09960;old_locus_tag=C9F05_10215
NZ_PYKE01000135.1	Protein Homology	CDS	40049	41287	.	-	0	ID=cds-WP_012543325.1;Parent=gene-C9F05_RS09960;Dbxref=GenBank:WP_012543325.1;Name=WP_012543325.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459323.3;locus_tag=C9F05_RS09960;product=MFS transporter;protein_id=WP_012543325.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	41628	41951	.	-	.	ID=gene-C9F05_RS09965;Name=C9F05_RS09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09965;old_locus_tag=C9F05_10220
NZ_PYKE01000135.1	Protein Homology	CDS	41628	41951	.	-	0	ID=cds-WP_001573898.1;Parent=gene-C9F05_RS09965;Dbxref=GenBank:WP_001573898.1;Name=WP_001573898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459322.1;locus_tag=C9F05_RS09965;product=DUF1889 family protein;protein_id=WP_001573898.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	pseudogene	42061	42136	.	-	.	ID=gene-C9F05_RS24020;Name=C9F05_RS24020;end_range=42136,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS24020;old_locus_tag=C9F05_10225;partial=true;pseudo=true
NZ_PYKE01000135.1	Protein Homology	CDS	42061	42136	.	-	1	ID=cds-C9F05_RS24020;Parent=gene-C9F05_RS24020;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=42136,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF020417.6;locus_tag=C9F05_RS24020;partial=true;product=diol dehydratase reactivase ATPase-like domain-containing protein;pseudo=true;transl_table=11
NZ_PYKE01000135.1	RefSeq	pseudogene	42137	42502	.	-	.	ID=gene-C9F05_RS09975;Name=C9F05_RS09975;end_range=42502,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS09975;old_locus_tag=C9F05_10230;partial=true;pseudo=true;start_range=.,42137
NZ_PYKE01000135.1	Protein Homology	CDS	42137	42502	.	-	0	ID=cds-C9F05_RS09975;Parent=gene-C9F05_RS09975;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=42502,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228916.1;locus_tag=C9F05_RS09975;partial=true;product=diol dehydratase reactivase ATPase-like domain-containing protein;pseudo=true;start_range=.,42137;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	42569	43573	.	+	.	ID=gene-C9F05_RS09980;Name=C9F05_RS09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS09980;old_locus_tag=C9F05_10235
NZ_PYKE01000135.1	Protein Homology	CDS	42569	43573	.	+	0	ID=cds-WP_135370234.1;Parent=gene-C9F05_RS09980;Dbxref=GenBank:WP_135370234.1;Name=WP_135370234.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612087.1;locus_tag=C9F05_RS09980;product=IS3 family transposase;protein_id=WP_135370234.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	pseudogene	43591	43845	.	-	.	ID=gene-C9F05_RS09985;Name=C9F05_RS09985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS09985;old_locus_tag=C9F05_10240;partial=true;pseudo=true;start_range=.,43591
NZ_PYKE01000135.1	Protein Homology	CDS	43591	43845	.	-	0	ID=cds-C9F05_RS09985;Parent=gene-C9F05_RS09985;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225313.1;locus_tag=C9F05_RS09985;partial=true;product=Arm DNA-binding domain-containing protein;pseudo=true;start_range=.,43591;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	44009	44084	.	-	.	ID=gene-C9F05_RS09990;Name=C9F05_RS09990;gbkey=Gene;gene_biotype=tRNA;locus_tag=C9F05_RS09990;old_locus_tag=C9F05_10245
NZ_PYKE01000135.1	tRNAscan-SE	tRNA	44009	44084	.	-	.	ID=rna-C9F05_RS09990;Parent=gene-C9F05_RS09990;anticodon=(pos:complement(44049..44051));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS09990;product=tRNA-Thr
NZ_PYKE01000135.1	tRNAscan-SE	exon	44009	44084	.	-	.	ID=exon-C9F05_RS09990-1;Parent=rna-C9F05_RS09990;anticodon=(pos:complement(44049..44051));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=C9F05_RS09990;product=tRNA-Thr
NZ_PYKE01000135.1	RefSeq	gene	44200	45450	.	-	.	ID=gene-C9F05_RS09995;Name=proA;gbkey=Gene;gene=proA;gene_biotype=protein_coding;locus_tag=C9F05_RS09995;old_locus_tag=C9F05_10250
NZ_PYKE01000135.1	Protein Homology	CDS	44200	45450	.	-	0	ID=cds-WP_135370232.1;Parent=gene-C9F05_RS09995;Dbxref=GenBank:WP_135370232.1;Name=WP_135370232.1;Ontology_term=GO:0055129,GO:0004350;gbkey=CDS;gene=proA;go_function=glutamate-5-semialdehyde dehydrogenase activity|0004350||IEA;go_process=L-proline biosynthetic process|0055129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459319.1;locus_tag=C9F05_RS09995;product=glutamate-5-semialdehyde dehydrogenase;protein_id=WP_135370232.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	45462	46565	.	-	.	ID=gene-C9F05_RS10000;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=C9F05_RS10000;old_locus_tag=C9F05_10255
NZ_PYKE01000135.1	Protein Homology	CDS	45462	46565	.	-	0	ID=cds-WP_001285275.1;Parent=gene-C9F05_RS10000;Dbxref=GenBank:WP_001285275.1;Name=WP_001285275.1;Ontology_term=GO:0055129,GO:0004349,GO:0005737;gbkey=CDS;gene=proB;go_component=cytoplasm|0005737||IEA;go_function=glutamate 5-kinase activity|0004349||IEA;go_process=L-proline biosynthetic process|0055129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459318.1;locus_tag=C9F05_RS10000;product=glutamate 5-kinase;protein_id=WP_001285275.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	46848	47900	.	+	.	ID=gene-C9F05_RS10005;Name=phoE;gbkey=Gene;gene=phoE;gene_biotype=protein_coding;locus_tag=C9F05_RS10005;old_locus_tag=C9F05_10260
NZ_PYKE01000135.1	Protein Homology	CDS	46848	47900	.	+	0	ID=cds-WP_001043667.1;Parent=gene-C9F05_RS10005;Dbxref=GenBank:WP_001043667.1;Name=WP_001043667.1;Ontology_term=GO:0034220,GO:0015288,GO:0016020;gbkey=CDS;gene=phoE;go_component=membrane|0016020||IEA;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459317.1;locus_tag=C9F05_RS10005;product=phosphoporin PhoE;protein_id=WP_001043667.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	47951	48352	.	-	.	ID=gene-C9F05_RS10010;Name=crl;gbkey=Gene;gene=crl;gene_biotype=protein_coding;locus_tag=C9F05_RS10010;old_locus_tag=C9F05_10265
NZ_PYKE01000135.1	Protein Homology	CDS	47951	48352	.	-	0	ID=cds-WP_000174693.1;Parent=gene-C9F05_RS10010;Dbxref=GenBank:WP_000174693.1;Name=WP_000174693.1;Ontology_term=GO:0045893;gbkey=CDS;gene=crl;go_process=positive regulation of DNA-templated transcription|0045893||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459316.1;locus_tag=C9F05_RS10010;product=sigma factor-binding protein Crl;protein_id=WP_000174693.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	48410	49654	.	-	.	ID=gene-C9F05_RS10015;Name=frsA;gbkey=Gene;gene=frsA;gene_biotype=protein_coding;locus_tag=C9F05_RS10015;old_locus_tag=C9F05_10270
NZ_PYKE01000135.1	Protein Homology	CDS	48410	49654	.	-	0	ID=cds-WP_000189586.1;Parent=gene-C9F05_RS10015;Dbxref=GenBank:WP_000189586.1;Name=WP_000189586.1;Ontology_term=GO:0016788;gbkey=CDS;gene=frsA;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459315.1;locus_tag=C9F05_RS10015;product=esterase FrsA;protein_id=WP_000189586.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	49743	50201	.	-	.	ID=gene-C9F05_RS10020;Name=gpt;gbkey=Gene;gene=gpt;gene_biotype=protein_coding;locus_tag=C9F05_RS10020;old_locus_tag=C9F05_10275
NZ_PYKE01000135.1	Protein Homology	CDS	49743	50201	.	-	0	ID=cds-WP_001292018.1;Parent=gene-C9F05_RS10020;Dbxref=GenBank:WP_001292018.1;Name=WP_001292018.1;Ontology_term=GO:0009116,GO:0000310;gbkey=CDS;gene=gpt;go_function=xanthine phosphoribosyltransferase activity|0000310||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459314.1;locus_tag=C9F05_RS10020;product=xanthine phosphoribosyltransferase;protein_id=WP_001292018.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	50450	51907	.	+	.	ID=gene-C9F05_RS10025;Name=pepD;gbkey=Gene;gene=pepD;gene_biotype=protein_coding;locus_tag=C9F05_RS10025;old_locus_tag=C9F05_10280
NZ_PYKE01000135.1	Protein Homology	CDS	50450	51907	.	+	0	ID=cds-WP_001292977.1;Parent=gene-C9F05_RS10025;Dbxref=GenBank:WP_001292977.1;Name=WP_001292977.1;Ontology_term=GO:0006508,GO:0016787;gbkey=CDS;gene=pepD;go_function=hydrolase activity|0016787||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459313.1;locus_tag=C9F05_RS10025;product=cytosol nonspecific dipeptidase;protein_id=WP_001292977.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	52062	52676	.	-	.	ID=gene-C9F05_RS10030;Name=prfH;gbkey=Gene;gene=prfH;gene_biotype=protein_coding;locus_tag=C9F05_RS10030;old_locus_tag=C9F05_10285
NZ_PYKE01000135.1	Protein Homology	CDS	52062	52676	.	-	0	ID=cds-WP_000602086.1;Parent=gene-C9F05_RS10030;Dbxref=GenBank:WP_000602086.1;Name=WP_000602086.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfH;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459312.1;locus_tag=C9F05_RS10030;product=peptide chain release factor H;protein_id=WP_000602086.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	52673	53812	.	-	.	ID=gene-C9F05_RS10035;Name=C9F05_RS10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10035;old_locus_tag=C9F05_10290
NZ_PYKE01000135.1	Protein Homology	CDS	52673	53812	.	-	0	ID=cds-WP_023193441.1;Parent=gene-C9F05_RS10035;Dbxref=GenBank:WP_023193441.1;Name=WP_023193441.1;Ontology_term=GO:0006415;gbkey=CDS;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006895405.1;locus_tag=C9F05_RS10035;product=RNA ligase RtcB family protein;protein_id=WP_023193441.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	54031	55086	.	-	.	ID=gene-C9F05_RS10040;Name=dinB;gbkey=Gene;gene=dinB;gene_biotype=protein_coding;locus_tag=C9F05_RS10040;old_locus_tag=C9F05_10295
NZ_PYKE01000135.1	Protein Homology	CDS	54031	55086	.	-	0	ID=cds-WP_001226199.1;Parent=gene-C9F05_RS10040;Dbxref=GenBank:WP_001226199.1;Name=WP_001226199.1;Ontology_term=GO:0006281,GO:0003684,GO:0003887;gbkey=CDS;gene=dinB;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459311.1;locus_tag=C9F05_RS10040;product=DNA polymerase IV;protein_id=WP_001226199.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	55336	56076	.	+	.	ID=gene-C9F05_RS10045;Name=dpaA;gbkey=Gene;gene=dpaA;gene_biotype=protein_coding;locus_tag=C9F05_RS10045;old_locus_tag=C9F05_10300
NZ_PYKE01000135.1	Protein Homology	CDS	55336	56076	.	+	0	ID=cds-WP_001225658.1;Parent=gene-C9F05_RS10045;Dbxref=GenBank:WP_001225658.1;Name=WP_001225658.1;gbkey=CDS;gene=dpaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459310.1;locus_tag=C9F05_RS10045;product=peptidoglycan meso-diaminopimelic acid protein amidase;protein_id=WP_001225658.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	56047	56814	.	-	.	ID=gene-C9F05_RS10050;Name=C9F05_RS10050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10050;old_locus_tag=C9F05_10305
NZ_PYKE01000135.1	Protein Homology	CDS	56047	56814	.	-	0	ID=cds-WP_000333387.1;Parent=gene-C9F05_RS10050;Dbxref=GenBank:WP_000333387.1;Name=WP_000333387.1;Ontology_term=GO:0006541,GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459309.1;locus_tag=C9F05_RS10050;product=class II glutamine amidotransferase;protein_id=WP_000333387.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	57027	57605	.	-	.	ID=gene-C9F05_RS10055;Name=lpcA;gbkey=Gene;gene=lpcA;gene_biotype=protein_coding;locus_tag=C9F05_RS10055;old_locus_tag=C9F05_10310
NZ_PYKE01000135.1	Protein Homology	CDS	57027	57605	.	-	0	ID=cds-WP_000284051.1;Parent=gene-C9F05_RS10055;Dbxref=GenBank:WP_000284051.1;Name=WP_000284051.1;Ontology_term=GO:1901135,GO:0008968;gbkey=CDS;gene=lpcA;go_function=D-sedoheptulose 7-phosphate isomerase activity|0008968||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459308.1;locus_tag=C9F05_RS10055;product=D-sedoheptulose 7-phosphate isomerase;protein_id=WP_000284051.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	57845	60289	.	+	.	ID=gene-C9F05_RS10060;Name=fadE;gbkey=Gene;gene=fadE;gene_biotype=protein_coding;locus_tag=C9F05_RS10060;old_locus_tag=C9F05_10315
NZ_PYKE01000135.1	Protein Homology	CDS	57845	60289	.	+	0	ID=cds-WP_000973041.1;Parent=gene-C9F05_RS10060;Dbxref=GenBank:WP_000973041.1;Name=WP_000973041.1;Ontology_term=GO:0033539,GO:0003995,GO:0050660;gbkey=CDS;gene=fadE;go_function=acyl-CoA dehydrogenase activity|0003995||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=fatty acid beta-oxidation using acyl-CoA dehydrogenase|0033539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459307.1;locus_tag=C9F05_RS10060;product=acyl-CoA dehydrogenase FadE;protein_id=WP_000973041.1;transl_table=11
NZ_PYKE01000135.1	RefSeq	gene	60398	61165	.	+	.	ID=gene-C9F05_RS10065;Name=C9F05_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10065;old_locus_tag=C9F05_10320
NZ_PYKE01000135.1	Protein Homology	CDS	60398	61165	.	+	0	ID=cds-WP_000015789.1;Parent=gene-C9F05_RS10065;Dbxref=GenBank:WP_000015789.1;Name=WP_000015789.1;Ontology_term=GO:0008152;gbkey=CDS;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459306.1;locus_tag=C9F05_RS10065;product=amidohydrolase;protein_id=WP_000015789.1;transl_table=11
##sequence-region NZ_PYKE01000061.1 1 19910
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000061.1	RefSeq	region	1	19910	.	+	.	ID=NZ_PYKE01000061.1:1..19910;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000061.1	RefSeq	gene	193	2226	.	-	.	ID=gene-C9F05_RS03705;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=C9F05_RS03705;old_locus_tag=C9F05_03775
NZ_PYKE01000061.1	Protein Homology	CDS	193	2226	.	-	0	ID=cds-WP_000195334.1;Parent=gene-C9F05_RS03705;Dbxref=GenBank:WP_000195334.1;Name=WP_000195334.1;Ontology_term=GO:0006431,GO:0000166,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=nucleotide binding|0000166||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461099.1;locus_tag=C9F05_RS03705;product=methionine--tRNA ligase;protein_id=WP_000195334.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	2391	3500	.	+	.	ID=gene-C9F05_RS03710;Name=apbC;gbkey=Gene;gene=apbC;gene_biotype=protein_coding;locus_tag=C9F05_RS03710;old_locus_tag=C9F05_03780
NZ_PYKE01000061.1	Protein Homology	CDS	2391	3500	.	+	0	ID=cds-WP_001005424.1;Parent=gene-C9F05_RS03710;Dbxref=GenBank:WP_001005424.1;Name=WP_001005424.1;Ontology_term=GO:0016226,GO:0005524,GO:0016887,GO:0051536;gbkey=CDS;gene=apbC;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461098.1;locus_tag=C9F05_RS03710;product=iron-sulfur cluster carrier protein ApbC;protein_id=WP_001005424.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	3778	4059	.	+	.	ID=gene-C9F05_RS03715;Name=C9F05_RS03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03715;old_locus_tag=C9F05_03785
NZ_PYKE01000061.1	Protein Homology	CDS	3778	4059	.	+	0	ID=cds-WP_135370039.1;Parent=gene-C9F05_RS03715;Dbxref=GenBank:WP_135370039.1;Name=WP_135370039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461097.1;locus_tag=C9F05_RS03715;product=DUF2574 family protein;protein_id=WP_135370039.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	4338	4871	.	+	.	ID=gene-C9F05_RS03720;Name=yehD;gbkey=Gene;gene=yehD;gene_biotype=protein_coding;locus_tag=C9F05_RS03720;old_locus_tag=C9F05_03790
NZ_PYKE01000061.1	Protein Homology	CDS	4338	4871	.	+	0	ID=cds-WP_135370040.1;Parent=gene-C9F05_RS03720;Dbxref=GenBank:WP_135370040.1;Name=WP_135370040.1;gbkey=CDS;gene=yehD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000830679.1;locus_tag=C9F05_RS03720;product=fimbrial protein YehD;protein_id=WP_135370040.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	4933	5613	.	+	.	ID=gene-C9F05_RS03725;Name=C9F05_RS03725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03725;old_locus_tag=C9F05_03795
NZ_PYKE01000061.1	Protein Homology	CDS	4933	5613	.	+	0	ID=cds-WP_023232020.1;Parent=gene-C9F05_RS03725;Dbxref=GenBank:WP_023232020.1;Name=WP_023232020.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000871810.1;locus_tag=C9F05_RS03725;product=fimbrial assembly chaperone;protein_id=WP_023232020.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	5642	8128	.	+	.	ID=gene-C9F05_RS03730;Name=C9F05_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03730;old_locus_tag=C9F05_03800
NZ_PYKE01000061.1	Protein Homology	CDS	5642	8128	.	+	0	ID=cds-WP_023232019.1;Parent=gene-C9F05_RS03730;Dbxref=GenBank:WP_023232019.1;Name=WP_023232019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000413359.1;locus_tag=C9F05_RS03730;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_023232019.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	8144	9166	.	+	.	ID=gene-C9F05_RS03735;Name=C9F05_RS03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03735;old_locus_tag=C9F05_03805
NZ_PYKE01000061.1	Protein Homology	CDS	8144	9166	.	+	0	ID=cds-WP_048348881.1;Parent=gene-C9F05_RS03735;Dbxref=GenBank:WP_048348881.1;Name=WP_048348881.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000825913.1;locus_tag=C9F05_RS03735;product=fimbrial protein;protein_id=WP_048348881.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	9210	9524	.	-	.	ID=gene-C9F05_RS03740;Name=rcnB;gbkey=Gene;gene=rcnB;gene_biotype=protein_coding;locus_tag=C9F05_RS03740;old_locus_tag=C9F05_03810
NZ_PYKE01000061.1	Protein Homology	CDS	9210	9524	.	-	0	ID=cds-WP_000837534.1;Parent=gene-C9F05_RS03740;Dbxref=GenBank:WP_000837534.1;Name=WP_000837534.1;gbkey=CDS;gene=rcnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461092.1;locus_tag=C9F05_RS03740;product=Ni(II)/Co(II) efflux transporter accessory subunit RcnB;protein_id=WP_000837534.1;transl_table=11
NZ_PYKE01000061.1	cmsearch	riboswitch	9806	9902	.	+	.	ID=id-NZ_PYKE01000061.1:9806..9902;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYKE01000061.1	RefSeq	gene	9934	10731	.	+	.	ID=gene-C9F05_RS03745;Name=thiM;gbkey=Gene;gene=thiM;gene_biotype=protein_coding;locus_tag=C9F05_RS03745;old_locus_tag=C9F05_03815
NZ_PYKE01000061.1	Protein Homology	CDS	9934	10731	.	+	0	ID=cds-WP_039519582.1;Parent=gene-C9F05_RS03745;Dbxref=GenBank:WP_039519582.1;Name=WP_039519582.1;Ontology_term=GO:0009228,GO:0004417;gbkey=CDS;gene=thiM;go_function=hydroxyethylthiazole kinase activity|0004417||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461091.1;locus_tag=C9F05_RS03745;product=hydroxyethylthiazole kinase;protein_id=WP_039519582.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	10718	11518	.	+	.	ID=gene-C9F05_RS03750;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=C9F05_RS03750;old_locus_tag=C9F05_03820
NZ_PYKE01000061.1	Protein Homology	CDS	10718	11518	.	+	0	ID=cds-WP_001188957.1;Parent=gene-C9F05_RS03750;Dbxref=GenBank:WP_001188957.1;Name=WP_001188957.1;Ontology_term=GO:0009228,GO:0008902,GO:0008972;gbkey=CDS;gene=thiD;go_function=hydroxymethylpyrimidine kinase activity|0008902||IEA,phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461090.1;locus_tag=C9F05_RS03750;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=WP_001188957.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	11554	12300	.	+	.	ID=gene-C9F05_RS03755;Name=C9F05_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03755;old_locus_tag=C9F05_03825
NZ_PYKE01000061.1	Protein Homology	CDS	11554	12300	.	+	0	ID=cds-WP_000434062.1;Parent=gene-C9F05_RS03755;Dbxref=GenBank:WP_000434062.1;Name=WP_000434062.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461089.1;locus_tag=C9F05_RS03755;product=GntR family transcriptional regulator;protein_id=WP_000434062.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	12274	13239	.	-	.	ID=gene-C9F05_RS03760;Name=C9F05_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03760;old_locus_tag=C9F05_03830
NZ_PYKE01000061.1	Protein Homology	CDS	12274	13239	.	-	0	ID=cds-WP_135370041.1;Parent=gene-C9F05_RS03760;Dbxref=GenBank:WP_135370041.1;Name=WP_135370041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461088.1;locus_tag=C9F05_RS03760;product=PfkB family carbohydrate kinase;protein_id=WP_135370041.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	13236	14240	.	-	.	ID=gene-C9F05_RS03765;Name=C9F05_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03765;old_locus_tag=C9F05_03835
NZ_PYKE01000061.1	Protein Homology	CDS	13236	14240	.	-	0	ID=cds-WP_000642793.1;Parent=gene-C9F05_RS03765;Dbxref=GenBank:WP_000642793.1;Name=WP_000642793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461087.1;locus_tag=C9F05_RS03765;product=ADP-ribosylglycohydrolase family protein;protein_id=WP_000642793.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	14237	15508	.	-	.	ID=gene-C9F05_RS03770;Name=C9F05_RS03770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03770;old_locus_tag=C9F05_03840
NZ_PYKE01000061.1	Protein Homology	CDS	14237	15508	.	-	0	ID=cds-WP_000858692.1;Parent=gene-C9F05_RS03770;Dbxref=GenBank:WP_000858692.1;Name=WP_000858692.1;Ontology_term=GO:0015858,GO:0005337,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=nucleoside transmembrane transporter activity|0005337||IEA;go_process=nucleoside transport|0015858||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461086.1;locus_tag=C9F05_RS03770;product=nucleoside permease;protein_id=WP_000858692.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	15762	16814	.	+	.	ID=gene-C9F05_RS03775;Name=fbaB;gbkey=Gene;gene=fbaB;gene_biotype=protein_coding;locus_tag=C9F05_RS03775;old_locus_tag=C9F05_03845
NZ_PYKE01000061.1	Protein Homology	CDS	15762	16814	.	+	0	ID=cds-WP_000129590.1;Parent=gene-C9F05_RS03775;Dbxref=GenBank:WP_000129590.1;Name=WP_000129590.1;Ontology_term=GO:0004332;gbkey=CDS;gene=fbaB;go_function=fructose-bisphosphate aldolase activity|0004332||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006820796.1;locus_tag=C9F05_RS03775;product=class I fructose-bisphosphate aldolase;protein_id=WP_000129590.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	16867	17766	.	-	.	ID=gene-C9F05_RS03780;Name=yegS;gbkey=Gene;gene=yegS;gene_biotype=protein_coding;locus_tag=C9F05_RS03780;old_locus_tag=C9F05_03850
NZ_PYKE01000061.1	Protein Homology	CDS	16867	17766	.	-	0	ID=cds-WP_001273393.1;Parent=gene-C9F05_RS03780;Dbxref=GenBank:WP_001273393.1;Name=WP_001273393.1;Ontology_term=GO:0001727,GO:0046872;gbkey=CDS;gene=yegS;go_function=lipid kinase activity|0001727||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461084.1;locus_tag=C9F05_RS03780;product=lipid kinase YegS;protein_id=WP_001273393.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	18331	18666	.	+	.	ID=gene-C9F05_RS03785;Name=steD;gbkey=Gene;gene=steD;gene_biotype=protein_coding;locus_tag=C9F05_RS03785;old_locus_tag=C9F05_03855
NZ_PYKE01000061.1	Protein Homology	CDS	18331	18666	.	+	0	ID=cds-WP_006497691.1;Parent=gene-C9F05_RS03785;Dbxref=GenBank:WP_006497691.1;Name=WP_006497691.1;gbkey=CDS;gene=steD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461083.1;locus_tag=C9F05_RS03785;product=type III secretion system effector SteD;protein_id=WP_006497691.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	gene	18788	19204	.	+	.	ID=gene-C9F05_RS03790;Name=C9F05_RS03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS03790;old_locus_tag=C9F05_03860
NZ_PYKE01000061.1	Protein Homology	CDS	18788	19204	.	+	0	ID=cds-WP_001555792.1;Parent=gene-C9F05_RS03790;Dbxref=GenBank:WP_001555792.1;Name=WP_001555792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461082.1;locus_tag=C9F05_RS03790;product=CesT family type III secretion system chaperone;protein_id=WP_001555792.1;transl_table=11
NZ_PYKE01000061.1	RefSeq	pseudogene	19240	19910	.	-	.	ID=gene-C9F05_RS03795;Name=sseK2;end_range=19910,.;gbkey=Gene;gene=sseK2;gene_biotype=pseudogene;locus_tag=C9F05_RS03795;old_locus_tag=C9F05_03865;partial=true;pseudo=true
NZ_PYKE01000061.1	Protein Homology	CDS	19240	19910	.	-	2	ID=cds-C9F05_RS03795;Parent=gene-C9F05_RS03795;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=19910,.;gbkey=CDS;gene=sseK2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461081.1;locus_tag=C9F05_RS03795;partial=true;product=type III secretion system effector arginine glycosyltransferase SseK2;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000023.1 1 945
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000023.1	RefSeq	region	1	945	.	+	.	ID=NZ_PYKE01000023.1:1..945;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000023.1	RefSeq	gene	1	945	.	-	.	ID=gene-C9F05_RS01020;Name=C9F05_RS01020;end_range=945,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01020;old_locus_tag=C9F05_01030;partial=true;start_range=.,1
NZ_PYKE01000023.1	Protein Homology	CDS	1	945	.	-	1	ID=cds-WP_135369949.1;Parent=gene-C9F05_RS01020;Dbxref=GenBank:WP_135369949.1;Name=WP_135369949.1;end_range=945,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459289.1;locus_tag=C9F05_RS01020;partial=true;product=RHS domain-containing protein;protein_id=WP_135369949.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000297.1 1 19747
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000297.1	RefSeq	region	1	19747	.	+	.	ID=NZ_PYKE01000297.1:1..19747;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000297.1	RefSeq	gene	365	1399	.	+	.	ID=gene-C9F05_RS20345;Name=rhaT;gbkey=Gene;gene=rhaT;gene_biotype=protein_coding;locus_tag=C9F05_RS20345;old_locus_tag=C9F05_20905
NZ_PYKE01000297.1	Protein Homology	CDS	365	1399	.	+	0	ID=cds-WP_000063541.1;Parent=gene-C9F05_RS20345;Dbxref=GenBank:WP_000063541.1;Name=WP_000063541.1;Ontology_term=GO:0008645,GO:0015153;gbkey=CDS;gene=rhaT;go_function=rhamnose transmembrane transporter activity|0015153||IEA;go_process=hexose transmembrane transport|0008645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462931.1;locus_tag=C9F05_RS20345;product=L-rhamnose/proton symporter RhaT;protein_id=WP_000063541.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	1396	2244	.	-	.	ID=gene-C9F05_RS20350;Name=rhaR;gbkey=Gene;gene=rhaR;gene_biotype=protein_coding;locus_tag=C9F05_RS20350;old_locus_tag=C9F05_20910
NZ_PYKE01000297.1	Protein Homology	CDS	1396	2244	.	-	0	ID=cds-WP_079951466.1;Parent=gene-C9F05_RS20350;Dbxref=GenBank:WP_079951466.1;Name=WP_079951466.1;gbkey=CDS;gene=rhaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462930.1;locus_tag=C9F05_RS20350;product=HTH-type transcriptional activator RhaR;protein_id=WP_079951466.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	2397	3233	.	-	.	ID=gene-C9F05_RS20355;Name=rhaS;gbkey=Gene;gene=rhaS;gene_biotype=protein_coding;locus_tag=C9F05_RS20355;old_locus_tag=C9F05_20920
NZ_PYKE01000297.1	Protein Homology	CDS	2397	3233	.	-	0	ID=cds-WP_114064421.1;Parent=gene-C9F05_RS20355;Dbxref=GenBank:WP_114064421.1;Name=WP_114064421.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=rhaS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462929.1;locus_tag=C9F05_RS20355;product=HTH-type transcriptional activator RhaS;protein_id=WP_114064421.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	3521	4990	.	+	.	ID=gene-C9F05_RS20360;Name=rhaB;gbkey=Gene;gene=rhaB;gene_biotype=protein_coding;locus_tag=C9F05_RS20360;old_locus_tag=C9F05_20925
NZ_PYKE01000297.1	Protein Homology	CDS	3521	4990	.	+	0	ID=cds-WP_001621393.1;Parent=gene-C9F05_RS20360;Dbxref=GenBank:WP_001621393.1;Name=WP_001621393.1;Ontology_term=GO:0005975,GO:0019301,GO:0008993;gbkey=CDS;gene=rhaB;go_function=rhamnulokinase activity|0008993||IEA;go_process=carbohydrate metabolic process|0005975||IEA,rhamnose catabolic process|0019301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462928.1;locus_tag=C9F05_RS20360;product=rhamnulokinase;protein_id=WP_001621393.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	4987	6246	.	+	.	ID=gene-C9F05_RS20365;Name=C9F05_RS20365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20365;old_locus_tag=C9F05_20930
NZ_PYKE01000297.1	Protein Homology	CDS	4987	6246	.	+	0	ID=cds-WP_000211469.1;Parent=gene-C9F05_RS20365;Dbxref=GenBank:WP_000211469.1;Name=WP_000211469.1;Ontology_term=GO:0008740,GO:0030145;gbkey=CDS;go_function=L-rhamnose isomerase activity|0008740||IEA,manganese ion binding|0030145||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462927.1;locus_tag=C9F05_RS20365;product=L-rhamnose isomerase;protein_id=WP_000211469.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	6389	7216	.	+	.	ID=gene-C9F05_RS20370;Name=rhaD;gbkey=Gene;gene=rhaD;gene_biotype=protein_coding;locus_tag=C9F05_RS20370;old_locus_tag=C9F05_20935
NZ_PYKE01000297.1	Protein Homology	CDS	6389	7216	.	+	0	ID=cds-WP_023261625.1;Parent=gene-C9F05_RS20370;Dbxref=GenBank:WP_023261625.1;Name=WP_023261625.1;gbkey=CDS;gene=rhaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462926.1;locus_tag=C9F05_RS20370;product=rhamnulose-1-phosphate aldolase;protein_id=WP_023261625.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	7343	8491	.	+	.	ID=gene-C9F05_RS20375;Name=fucO;gbkey=Gene;gene=fucO;gene_biotype=protein_coding;locus_tag=C9F05_RS20375;old_locus_tag=C9F05_20940
NZ_PYKE01000297.1	Protein Homology	CDS	7343	8491	.	+	0	ID=cds-WP_000009253.1;Parent=gene-C9F05_RS20375;Dbxref=GenBank:WP_000009253.1;Name=WP_000009253.1;Ontology_term=GO:0008912;gbkey=CDS;gene=fucO;go_function=lactaldehyde reductase activity|0008912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462925.1;locus_tag=C9F05_RS20375;product=lactaldehyde reductase;protein_id=WP_000009253.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	8488	8802	.	+	.	ID=gene-C9F05_RS20380;Name=rhaM;gbkey=Gene;gene=rhaM;gene_biotype=protein_coding;locus_tag=C9F05_RS20380;old_locus_tag=C9F05_20945
NZ_PYKE01000297.1	Protein Homology	CDS	8488	8802	.	+	0	ID=cds-WP_000619478.1;Parent=gene-C9F05_RS20380;Dbxref=GenBank:WP_000619478.1;Name=WP_000619478.1;Ontology_term=GO:0016857,GO:0062192,GO:0005737;gbkey=CDS;gene=rhaM;go_component=cytoplasm|0005737||IEA;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA,L-rhamnose mutarotase activity|0062192||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462924.1;locus_tag=C9F05_RS20380;product=L-rhamnose mutarotase;protein_id=WP_000619478.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	8891	9439	.	-	.	ID=gene-C9F05_RS20385;Name=C9F05_RS20385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20385;old_locus_tag=C9F05_20950
NZ_PYKE01000297.1	Protein Homology	CDS	8891	9439	.	-	0	ID=cds-WP_001517951.1;Parent=gene-C9F05_RS20385;Dbxref=GenBank:WP_001517951.1;Name=WP_001517951.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004855902.1;locus_tag=C9F05_RS20385;product=helix-turn-helix domain-containing protein;protein_id=WP_001517951.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	9540	10199	.	+	.	ID=gene-C9F05_RS20390;Name=C9F05_RS20390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20390;old_locus_tag=C9F05_20955
NZ_PYKE01000297.1	Protein Homology	CDS	9540	10199	.	+	0	ID=cds-WP_000683586.1;Parent=gene-C9F05_RS20390;Dbxref=GenBank:WP_000683586.1;Name=WP_000683586.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:1902495;gbkey=CDS;go_component=membrane|0016020||IEA,transmembrane transporter complex|1902495||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462922.1;locus_tag=C9F05_RS20390;product=AzlC family ABC transporter permease;protein_id=WP_000683586.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	10199	10522	.	+	.	ID=gene-C9F05_RS20395;Name=C9F05_RS20395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20395;old_locus_tag=C9F05_20960
NZ_PYKE01000297.1	Protein Homology	CDS	10199	10522	.	+	0	ID=cds-WP_108638945.1;Parent=gene-C9F05_RS20395;Dbxref=GenBank:WP_108638945.1;Name=WP_108638945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462921.1;locus_tag=C9F05_RS20395;product=AzlD domain-containing protein;protein_id=WP_108638945.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	10766	13369	.	+	.	ID=gene-C9F05_RS20400;Name=C9F05_RS20400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20400;old_locus_tag=C9F05_20965
NZ_PYKE01000297.1	Protein Homology	CDS	10766	13369	.	+	0	ID=cds-WP_135370583.1;Parent=gene-C9F05_RS20400;Dbxref=GenBank:WP_135370583.1;Name=WP_135370583.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966530.1;locus_tag=C9F05_RS20400;product=sigma 54-interacting transcriptional regulator;protein_id=WP_135370583.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	13542	14024	.	+	.	ID=gene-C9F05_RS20405;Name=C9F05_RS20405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20405;old_locus_tag=C9F05_20970
NZ_PYKE01000297.1	Protein Homology	CDS	13542	14024	.	+	0	ID=cds-WP_135370584.1;Parent=gene-C9F05_RS20405;Dbxref=GenBank:WP_135370584.1;Name=WP_135370584.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014837007.1;locus_tag=C9F05_RS20405;product=PTS sugar transporter subunit IIA;protein_id=WP_135370584.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	14021	15199	.	+	.	ID=gene-C9F05_RS20410;Name=C9F05_RS20410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20410;old_locus_tag=C9F05_20975
NZ_PYKE01000297.1	Protein Homology	CDS	14021	15199	.	+	0	ID=cds-WP_135370585.1;Parent=gene-C9F05_RS20410;Dbxref=GenBank:WP_135370585.1;Name=WP_135370585.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004127142.1;locus_tag=C9F05_RS20410;product=glycoside hydrolase family 88 protein;protein_id=WP_135370585.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	15212	15709	.	+	.	ID=gene-C9F05_RS20415;Name=C9F05_RS20415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20415;old_locus_tag=C9F05_20980
NZ_PYKE01000297.1	Protein Homology	CDS	15212	15709	.	+	0	ID=cds-WP_065357305.1;Parent=gene-C9F05_RS20415;Dbxref=GenBank:WP_065357305.1;Name=WP_065357305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004132852.1;locus_tag=C9F05_RS20415;product=PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB;protein_id=WP_065357305.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	15721	16521	.	+	.	ID=gene-C9F05_RS20420;Name=C9F05_RS20420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20420;old_locus_tag=C9F05_20985
NZ_PYKE01000297.1	Protein Homology	CDS	15721	16521	.	+	0	ID=cds-WP_135370586.1;Parent=gene-C9F05_RS20420;Dbxref=GenBank:WP_135370586.1;Name=WP_135370586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966534.1;locus_tag=C9F05_RS20420;product=PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC;protein_id=WP_135370586.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	16514	17356	.	+	.	ID=gene-C9F05_RS20425;Name=C9F05_RS20425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20425;old_locus_tag=C9F05_20990
NZ_PYKE01000297.1	Protein Homology	CDS	16514	17356	.	+	0	ID=cds-WP_135370587.1;Parent=gene-C9F05_RS20425;Dbxref=GenBank:WP_135370587.1;Name=WP_135370587.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004116794.1;locus_tag=C9F05_RS20425;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_135370587.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	17708	18406	.	+	.	ID=gene-C9F05_RS20430;Name=C9F05_RS20430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20430;old_locus_tag=C9F05_20995
NZ_PYKE01000297.1	Protein Homology	CDS	17708	18406	.	+	0	ID=cds-WP_135370588.1;Parent=gene-C9F05_RS20430;Dbxref=GenBank:WP_135370588.1;Name=WP_135370588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004107397.1;locus_tag=C9F05_RS20430;product=oligogalacturonate-specific porin KdgM family protein;protein_id=WP_135370588.1;transl_table=11
NZ_PYKE01000297.1	RefSeq	gene	18481	19581	.	-	.	ID=gene-C9F05_RS20435;Name=C9F05_RS20435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20435;old_locus_tag=C9F05_21000
NZ_PYKE01000297.1	Protein Homology	CDS	18481	19581	.	-	0	ID=cds-WP_000828048.1;Parent=gene-C9F05_RS20435;Dbxref=GenBank:WP_000828048.1;Name=WP_000828048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000828052.1;locus_tag=C9F05_RS20435;product=YiiG family protein;protein_id=WP_000828048.1;transl_table=11
##sequence-region NZ_PYKE01000306.1 1 894
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000306.1	RefSeq	region	1	894	.	+	.	ID=NZ_PYKE01000306.1:1..894;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000306.1	RefSeq	pseudogene	1	894	.	+	.	ID=gene-C9F05_RS20735;Name=C9F05_RS20735;end_range=894,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS20735;old_locus_tag=C9F05_21315;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000306.1	Protein Homology	CDS	1	894	.	+	0	ID=cds-C9F05_RS20735;Parent=gene-C9F05_RS20735;Note=frameshifted%3B incomplete%3B missing N-terminus and C-terminus;Ontology_term=GO:0004803;end_range=894,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611456.1;locus_tag=C9F05_RS20735;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000197.1 1 884
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000197.1	RefSeq	region	1	884	.	+	.	ID=NZ_PYKE01000197.1:1..884;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000197.1	RefSeq	pseudogene	1	884	.	+	.	ID=gene-C9F05_RS12845;Name=C9F05_RS12845;end_range=884,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS12845;old_locus_tag=C9F05_13215;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000197.1	Protein Homology	CDS	1	884	.	+	0	ID=cds-C9F05_RS12845;Parent=gene-C9F05_RS12845;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=884,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460656.1;locus_tag=C9F05_RS12845;partial=true;product=Secreted effector kinase SteC;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000071.1 1 875
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000071.1	RefSeq	region	1	875	.	+	.	ID=NZ_PYKE01000071.1:1..875;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000071.1	RefSeq	gene	1	250	.	-	.	ID=gene-C9F05_RS04580;Name=C9F05_RS04580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS04580;old_locus_tag=C9F05_04645;partial=true;start_range=.,1
NZ_PYKE01000071.1	Protein Homology	CDS	1	250	.	-	0	ID=cds-WP_135370058.1;Parent=gene-C9F05_RS04580;Dbxref=GenBank:WP_135370058.1;Name=WP_135370058.1;Ontology_term=GO:0006310,GO:0006313,GO:0015074,GO:0032196,GO:0003677,GO:0004803,GO:0046872;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA,metal ion binding|0046872||IEA;go_process=DNA recombination|0006310||IEA,DNA transposition|0006313||IEA,DNA integration|0015074||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611456.1;locus_tag=C9F05_RS04580;partial=true;product=transposase;protein_id=WP_135370058.1;start_range=.,1;transl_table=11
NZ_PYKE01000071.1	RefSeq	pseudogene	458	758	.	+	.	ID=gene-C9F05_RS04585;Name=C9F05_RS04585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS04585;old_locus_tag=C9F05_04650;pseudo=true
NZ_PYKE01000071.1	Protein Homology	CDS	458	758	.	+	0	ID=cds-C9F05_RS04585;Parent=gene-C9F05_RS04585;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008806398.1;locus_tag=C9F05_RS04585;product=YciI family protein;pseudo=true;transl_table=11
##sequence-region NZ_PYKE01000254.1 1 857
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000254.1	RefSeq	region	1	857	.	+	.	ID=NZ_PYKE01000254.1:1..857;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000254.1	RefSeq	gene	193	857	.	-	.	ID=gene-C9F05_RS16490;Name=C9F05_RS16490;end_range=857,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS16490;old_locus_tag=C9F05_16965;partial=true
NZ_PYKE01000254.1	Protein Homology	CDS	193	857	.	-	2	ID=cds-WP_135370475.1;Parent=gene-C9F05_RS16490;Dbxref=GenBank:WP_135370475.1;Name=WP_135370475.1;end_range=857,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018584.6;locus_tag=C9F05_RS16490;partial=true;product=DUF1266 domain-containing protein;protein_id=WP_135370475.1;transl_table=11
##sequence-region NZ_PYKE01000029.1 1 19650
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000029.1	RefSeq	region	1	19650	.	+	.	ID=NZ_PYKE01000029.1:1..19650;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000029.1	RefSeq	gene	14	1177	.	+	.	ID=gene-C9F05_RS01770;Name=C9F05_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01770;old_locus_tag=C9F05_01805
NZ_PYKE01000029.1	Protein Homology	CDS	14	1177	.	+	0	ID=cds-WP_000977208.1;Parent=gene-C9F05_RS01770;Dbxref=GenBank:WP_000977208.1;Name=WP_000977208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463274.1;locus_tag=C9F05_RS01770;product=metallo-dependent hydrolase;protein_id=WP_000977208.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	1174	2382	.	+	.	ID=gene-C9F05_RS01775;Name=C9F05_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01775;old_locus_tag=C9F05_01810
NZ_PYKE01000029.1	Protein Homology	CDS	1174	2382	.	+	0	ID=cds-WP_117380604.1;Parent=gene-C9F05_RS01775;Dbxref=GenBank:WP_117380604.1;Name=WP_117380604.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463273.1;locus_tag=C9F05_RS01775;product=MFS transporter;protein_id=WP_117380604.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	2436	2780	.	-	.	ID=gene-C9F05_RS01780;Name=C9F05_RS01780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01780;old_locus_tag=C9F05_01815
NZ_PYKE01000029.1	Protein Homology	CDS	2436	2780	.	-	0	ID=cds-WP_001219167.1;Parent=gene-C9F05_RS01780;Dbxref=GenBank:WP_001219167.1;Name=WP_001219167.1;Ontology_term=GO:0061929;gbkey=CDS;go_function=gamma-glutamylaminecyclotransferase activity|0061929||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463272.1;locus_tag=C9F05_RS01780;product=gamma-glutamylcyclotransferase family protein;protein_id=WP_001219167.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	2783	6562	.	-	.	ID=gene-C9F05_RS01785;Name=tamB;gbkey=Gene;gene=tamB;gene_biotype=protein_coding;locus_tag=C9F05_RS01785;old_locus_tag=C9F05_01820
NZ_PYKE01000029.1	Protein Homology	CDS	2783	6562	.	-	0	ID=cds-WP_135369969.1;Parent=gene-C9F05_RS01785;Dbxref=GenBank:WP_135369969.1;Name=WP_135369969.1;Ontology_term=GO:0009306,GO:0089705;gbkey=CDS;gene=tamB;go_process=protein secretion|0009306||IEA,protein localization to outer membrane|0089705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463271.1;locus_tag=C9F05_RS01785;product=autotransporter assembly complex protein TamB;protein_id=WP_135369969.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	6559	8292	.	-	.	ID=gene-C9F05_RS01790;Name=tamA;gbkey=Gene;gene=tamA;gene_biotype=protein_coding;locus_tag=C9F05_RS01790;old_locus_tag=C9F05_01825
NZ_PYKE01000029.1	Protein Homology	CDS	6559	8292	.	-	0	ID=cds-WP_001120230.1;Parent=gene-C9F05_RS01790;Dbxref=GenBank:WP_001120230.1;Name=WP_001120230.1;Ontology_term=GO:0009306,GO:0089705;gbkey=CDS;gene=tamA;go_process=protein secretion|0009306||IEA,protein localization to outer membrane|0089705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463270.1;locus_tag=C9F05_RS01790;product=autotransporter assembly complex protein TamA;protein_id=WP_001120230.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	8505	9143	.	+	.	ID=gene-C9F05_RS01795;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=C9F05_RS01795;old_locus_tag=C9F05_01830
NZ_PYKE01000029.1	Protein Homology	CDS	8505	9143	.	+	0	ID=cds-WP_135369970.1;Parent=gene-C9F05_RS01795;Dbxref=GenBank:WP_135369970.1;Name=WP_135369970.1;Ontology_term=GO:0006979,GO:0030091,GO:0008113,GO:0033744;gbkey=CDS;gene=msrA;go_function=peptide-methionine (S)-S-oxide reductase activity|0008113||IEA,L-methionine:thioredoxin-disulfide S-oxidoreductase activity|0033744||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463269.1;locus_tag=C9F05_RS01795;product=peptide-methionine (S)-S-oxide reductase MsrA;protein_id=WP_135369970.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	9326	10669	.	+	.	ID=gene-C9F05_RS01800;Name=C9F05_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01800;old_locus_tag=C9F05_01835
NZ_PYKE01000029.1	Protein Homology	CDS	9326	10669	.	+	0	ID=cds-WP_000934972.1;Parent=gene-C9F05_RS01800;Dbxref=GenBank:WP_000934972.1;Name=WP_000934972.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463268.1;locus_tag=C9F05_RS01800;product=hemolysin family protein;protein_id=WP_000934972.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	10754	10960	.	-	.	ID=gene-C9F05_RS01805;Name=C9F05_RS01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01805;old_locus_tag=C9F05_01840
NZ_PYKE01000029.1	Protein Homology	CDS	10754	10960	.	-	0	ID=cds-WP_000689229.1;Parent=gene-C9F05_RS01805;Dbxref=GenBank:WP_000689229.1;Name=WP_000689229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966176.1;locus_tag=C9F05_RS01805;product=DUF1107 domain-containing protein;protein_id=WP_000689229.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	11287	11844	.	+	.	ID=gene-C9F05_RS01815;Name=C9F05_RS01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01815;old_locus_tag=C9F05_01850
NZ_PYKE01000029.1	Protein Homology	CDS	11287	11844	.	+	0	ID=cds-WP_000175301.1;Parent=gene-C9F05_RS01815;Dbxref=GenBank:WP_000175301.1;Name=WP_000175301.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463266.1;locus_tag=C9F05_RS01815;product=YtfJ family protein;protein_id=WP_000175301.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	11834	12574	.	-	.	ID=gene-C9F05_RS01820;Name=cysQ;gbkey=Gene;gene=cysQ;gene_biotype=protein_coding;locus_tag=C9F05_RS01820;old_locus_tag=C9F05_01855
NZ_PYKE01000029.1	Protein Homology	CDS	11834	12574	.	-	0	ID=cds-WP_000893398.1;Parent=gene-C9F05_RS01820;Dbxref=GenBank:WP_000893398.1;Name=WP_000893398.1;Ontology_term=GO:0000287,GO:0008441;gbkey=CDS;gene=cysQ;go_function=magnesium ion binding|0000287||IEA,3'(2')%2C5'-bisphosphate nucleotidase activity|0008441||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463265.1;locus_tag=C9F05_RS01820;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=WP_000893398.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	12842	14785	.	+	.	ID=gene-C9F05_RS01830;Name=C9F05_RS01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01830;old_locus_tag=C9F05_01865
NZ_PYKE01000029.1	Protein Homology	CDS	12842	14785	.	+	0	ID=cds-WP_135369972.1;Parent=gene-C9F05_RS01830;Dbxref=GenBank:WP_135369972.1;Name=WP_135369972.1;Ontology_term=GO:0009166,GO:0000166,GO:0008663,GO:0016788;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase activity|0008663||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463264.1;locus_tag=C9F05_RS01830;product=bifunctional 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;protein_id=WP_135369972.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	14843	15229	.	-	.	ID=gene-C9F05_RS01835;Name=C9F05_RS01835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01835;old_locus_tag=C9F05_01870
NZ_PYKE01000029.1	Protein Homology	CDS	14843	15229	.	-	0	ID=cds-WP_001201295.1;Parent=gene-C9F05_RS01835;Dbxref=GenBank:WP_001201295.1;Name=WP_001201295.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463263.1;locus_tag=C9F05_RS01835;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_001201295.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	15317	16165	.	+	.	ID=gene-C9F05_RS01840;Name=C9F05_RS01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01840;old_locus_tag=C9F05_01875
NZ_PYKE01000029.1	Protein Homology	CDS	15317	16165	.	+	0	ID=cds-WP_094889049.1;Parent=gene-C9F05_RS01840;Dbxref=GenBank:WP_094889049.1;Name=WP_094889049.1;Ontology_term=GO:0016655;gbkey=CDS;go_function=oxidoreductase activity%2C acting on NAD(P)H%2C quinone or similar compound as acceptor|0016655||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463262.1;locus_tag=C9F05_RS01840;product=SDR family oxidoreductase;protein_id=WP_094889049.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	16246	17211	.	+	.	ID=gene-C9F05_RS01845;Name=C9F05_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS01845;old_locus_tag=C9F05_01880
NZ_PYKE01000029.1	Protein Homology	CDS	16246	17211	.	+	0	ID=cds-WP_000623290.1;Parent=gene-C9F05_RS01845;Dbxref=GenBank:WP_000623290.1;Name=WP_000623290.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463261.1;locus_tag=C9F05_RS01845;product=DMT family transporter;protein_id=WP_000623290.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	17314	17976	.	+	.	ID=gene-C9F05_RS01850;Name=ytfE;gbkey=Gene;gene=ytfE;gene_biotype=protein_coding;locus_tag=C9F05_RS01850;old_locus_tag=C9F05_01885
NZ_PYKE01000029.1	Protein Homology	CDS	17314	17976	.	+	0	ID=cds-WP_000331471.1;Parent=gene-C9F05_RS01850;Dbxref=GenBank:WP_000331471.1;Name=WP_000331471.1;gbkey=CDS;gene=ytfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463260.1;locus_tag=C9F05_RS01850;product=iron-sulfur cluster repair protein YtfE;protein_id=WP_000331471.1;transl_table=11
NZ_PYKE01000029.1	RefSeq	gene	18088	19497	.	-	.	ID=gene-C9F05_RS01855;Name=cycA;gbkey=Gene;gene=cycA;gene_biotype=protein_coding;gene_synonym=dagA;locus_tag=C9F05_RS01855;old_locus_tag=C9F05_01890
NZ_PYKE01000029.1	Protein Homology	CDS	18088	19497	.	-	0	ID=cds-WP_000228322.1;Parent=gene-C9F05_RS01855;Dbxref=GenBank:WP_000228322.1;Name=WP_000228322.1;Ontology_term=GO:0006865,GO:0055085,GO:0016020;gbkey=CDS;gene=cycA;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463259.1;locus_tag=C9F05_RS01855;product=D-serine/D-alanine/glycine transporter;protein_id=WP_000228322.1;transl_table=11
##sequence-region NZ_PYKE01000094.1 1 846
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000094.1	RefSeq	region	1	846	.	+	.	ID=NZ_PYKE01000094.1:1..846;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000094.1	RefSeq	gene	175	837	.	+	.	ID=gene-C9F05_RS06820;Name=C9F05_RS06820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS06820;old_locus_tag=C9F05_06955
NZ_PYKE01000094.1	Protein Homology	CDS	175	837	.	+	0	ID=cds-WP_135370133.1;Parent=gene-C9F05_RS06820;Dbxref=GenBank:WP_135370133.1;Name=WP_135370133.1;Ontology_term=GO:0032259,GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001551832.1;locus_tag=C9F05_RS06820;product=class I SAM-dependent methyltransferase;protein_id=WP_135370133.1;transl_table=11
##sequence-region NZ_PYKE01000228.1 1 837
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000228.1	RefSeq	region	1	837	.	+	.	ID=NZ_PYKE01000228.1:1..837;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000228.1	RefSeq	gene	55	714	.	+	.	ID=gene-C9F05_RS14925;Name=C9F05_RS14925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS14925;old_locus_tag=C9F05_15345
NZ_PYKE01000228.1	Protein Homology	CDS	55	714	.	+	0	ID=cds-WP_000009241.1;Parent=gene-C9F05_RS14925;Dbxref=GenBank:WP_000009241.1;Name=WP_000009241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000009241.1;locus_tag=C9F05_RS14925;product=DUF2726 domain-containing protein;protein_id=WP_000009241.1;transl_table=11
##sequence-region NZ_PYKE01000147.1 1 19454
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000147.1	RefSeq	region	1	19454	.	+	.	ID=NZ_PYKE01000147.1:1..19454;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000147.1	RefSeq	gene	1	1765	.	-	.	ID=gene-C9F05_RS10605;Name=rsxC;gbkey=Gene;gene=rsxC;gene_biotype=protein_coding;locus_tag=C9F05_RS10605;old_locus_tag=C9F05_10870;partial=true;start_range=.,1
NZ_PYKE01000147.1	Protein Homology	CDS	1	1765	.	-	0	ID=cds-WP_135370258.1;Parent=gene-C9F05_RS10605;Dbxref=GenBank:WP_135370258.1;Name=WP_135370258.1;Ontology_term=GO:0009055,GO:0051539,GO:0016020;gbkey=CDS;gene=rsxC;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460420.1;locus_tag=C9F05_RS10605;partial=true;product=electron transport complex subunit RsxC;protein_id=WP_135370258.1;start_range=.,1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	1758	2336	.	-	.	ID=gene-C9F05_RS10610;Name=rsxB;gbkey=Gene;gene=rsxB;gene_biotype=protein_coding;locus_tag=C9F05_RS10610;old_locus_tag=C9F05_10875
NZ_PYKE01000147.1	Protein Homology	CDS	1758	2336	.	-	0	ID=cds-WP_001092597.1;Parent=gene-C9F05_RS10610;Dbxref=GenBank:WP_001092597.1;Name=WP_001092597.1;Ontology_term=GO:0022900,GO:0009055,GO:0051536;gbkey=CDS;gene=rsxB;go_function=electron transfer activity|0009055||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460421.1;locus_tag=C9F05_RS10610;product=electron transport complex subunit RsxB;protein_id=WP_001092597.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	2336	2917	.	-	.	ID=gene-C9F05_RS10615;Name=rsxA;gbkey=Gene;gene=rsxA;gene_biotype=protein_coding;locus_tag=C9F05_RS10615;old_locus_tag=C9F05_10880
NZ_PYKE01000147.1	Protein Homology	CDS	2336	2917	.	-	0	ID=cds-WP_000133179.1;Parent=gene-C9F05_RS10615;Dbxref=GenBank:WP_000133179.1;Name=WP_000133179.1;Ontology_term=GO:0022900,GO:0016020;gbkey=CDS;gene=rsxA;go_component=membrane|0016020||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017456621.1;locus_tag=C9F05_RS10615;product=electron transport complex subunit RsxA;protein_id=WP_000133179.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	2994	3434	.	-	.	ID=gene-C9F05_RS10620;Name=C9F05_RS10620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10620;old_locus_tag=C9F05_10885
NZ_PYKE01000147.1	Protein Homology	CDS	2994	3434	.	-	0	ID=cds-WP_000214061.1;Parent=gene-C9F05_RS10620;Dbxref=GenBank:WP_000214061.1;Name=WP_000214061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460423.1;locus_tag=C9F05_RS10620;product=DUF2569 domain-containing protein;protein_id=WP_000214061.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	3523	3738	.	-	.	ID=gene-C9F05_RS10625;Name=ydgT;gbkey=Gene;gene=ydgT;gene_biotype=protein_coding;locus_tag=C9F05_RS10625;old_locus_tag=C9F05_10890
NZ_PYKE01000147.1	Protein Homology	CDS	3523	3738	.	-	0	ID=cds-WP_000217946.1;Parent=gene-C9F05_RS10625;Dbxref=GenBank:WP_000217946.1;Name=WP_000217946.1;gbkey=CDS;gene=ydgT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460424.3;locus_tag=C9F05_RS10625;product=transcription modulator YdgT;protein_id=WP_000217946.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	4036	4161	.	-	.	ID=gene-C9F05_RS10630;Name=blr;gbkey=Gene;gene=blr;gene_biotype=protein_coding;locus_tag=C9F05_RS10630;old_locus_tag=C9F05_10895
NZ_PYKE01000147.1	Protein Homology	CDS	4036	4161	.	-	0	ID=cds-WP_001708800.1;Parent=gene-C9F05_RS10630;Dbxref=GenBank:WP_001708800.1;Name=WP_001708800.1;gbkey=CDS;gene=blr;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025303.1;locus_tag=C9F05_RS10630;product=division septum protein Blr;protein_id=WP_001708800.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	4369	5409	.	+	.	ID=gene-C9F05_RS10635;Name=C9F05_RS10635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10635;old_locus_tag=C9F05_10900
NZ_PYKE01000147.1	Protein Homology	CDS	4369	5409	.	+	0	ID=cds-WP_000998242.1;Parent=gene-C9F05_RS10635;Dbxref=GenBank:WP_000998242.1;Name=WP_000998242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310359.2;locus_tag=C9F05_RS10635;product=oxidoreductase;protein_id=WP_000998242.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	5483	6484	.	-	.	ID=gene-C9F05_RS10640;Name=add;gbkey=Gene;gene=add;gene_biotype=protein_coding;locus_tag=C9F05_RS10640;old_locus_tag=C9F05_10905
NZ_PYKE01000147.1	Protein Homology	CDS	5483	6484	.	-	0	ID=cds-WP_135370259.1;Parent=gene-C9F05_RS10640;Dbxref=GenBank:WP_135370259.1;Name=WP_135370259.1;Ontology_term=GO:0009168,GO:0004000;gbkey=CDS;gene=add;go_function=adenosine deaminase activity|0004000||IEA;go_process=purine ribonucleoside monophosphate biosynthetic process|0009168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000565557.1;locus_tag=C9F05_RS10640;product=adenosine deaminase;protein_id=WP_135370259.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	pseudogene	6702	7076	.	-	.	ID=gene-C9F05_RS10645;Name=C9F05_RS10645;end_range=7076,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS10645;old_locus_tag=C9F05_10910;partial=true;pseudo=true
NZ_PYKE01000147.1	Protein Homology	CDS	6702	7076	.	-	0	ID=cds-C9F05_RS10645;Parent=gene-C9F05_RS10645;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009058,GO:0030170;end_range=7076,.;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310357.1;locus_tag=C9F05_RS10645;partial=true;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;pseudo=true;transl_table=11
NZ_PYKE01000147.1	RefSeq	pseudogene	7095	7697	.	+	.	ID=gene-C9F05_RS10650;Name=malI;gbkey=Gene;gene=malI;gene_biotype=pseudogene;locus_tag=C9F05_RS10650;old_locus_tag=C9F05_10915;partial=true;pseudo=true;start_range=.,7095
NZ_PYKE01000147.1	Protein Homology	CDS	7095	7697	.	+	0	ID=cds-C9F05_RS10650;Parent=gene-C9F05_RS10650;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=malI;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416137.1;locus_tag=C9F05_RS10650;partial=true;product=Mal regulon transcriptional regulator MalI;pseudo=true;start_range=.,7095;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	7755	9263	.	-	.	ID=gene-C9F05_RS10655;Name=C9F05_RS10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10655;old_locus_tag=C9F05_10920
NZ_PYKE01000147.1	Protein Homology	CDS	7755	9263	.	-	0	ID=cds-WP_000753334.1;Parent=gene-C9F05_RS10655;Dbxref=GenBank:WP_000753334.1;Name=WP_000753334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460427.1;locus_tag=C9F05_RS10655;product=YdgA family protein;protein_id=WP_000753334.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	9366	10541	.	-	.	ID=gene-C9F05_RS10660;Name=manA;gbkey=Gene;gene=manA;gene_biotype=protein_coding;locus_tag=C9F05_RS10660;old_locus_tag=C9F05_10925
NZ_PYKE01000147.1	Protein Homology	CDS	9366	10541	.	-	0	ID=cds-WP_001170623.1;Parent=gene-C9F05_RS10660;Dbxref=GenBank:WP_001170623.1;Name=WP_001170623.1;Ontology_term=GO:0009298,GO:0004476,GO:0008270;gbkey=CDS;gene=manA;go_function=mannose-6-phosphate isomerase activity|0004476||IEA,zinc ion binding|0008270||IEA;go_process=GDP-mannose biosynthetic process|0009298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460428.1;locus_tag=C9F05_RS10660;product=mannose-6-phosphate isomerase;protein_id=WP_001170623.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	10741	12387	.	+	.	ID=gene-C9F05_RS10665;Name=fumB;gbkey=Gene;gene=fumB;gene_biotype=protein_coding;locus_tag=C9F05_RS10665;old_locus_tag=C9F05_10930
NZ_PYKE01000147.1	Protein Homology	CDS	10741	12387	.	+	0	ID=cds-WP_000066609.1;Parent=gene-C9F05_RS10665;Dbxref=GenBank:WP_000066609.1;Name=WP_000066609.1;gbkey=CDS;gene=fumB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000066594.1;locus_tag=C9F05_RS10665;product=class I fumarate hydratase;protein_id=WP_000066609.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	12555	13958	.	+	.	ID=gene-C9F05_RS10670;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=C9F05_RS10670;old_locus_tag=C9F05_10935
NZ_PYKE01000147.1	Protein Homology	CDS	12555	13958	.	+	0	ID=cds-WP_023993247.1;Parent=gene-C9F05_RS10670;Dbxref=GenBank:WP_023993247.1;Name=WP_023993247.1;Ontology_term=GO:0006106,GO:0004333,GO:0045239;gbkey=CDS;gene=fumC;go_component=tricarboxylic acid cycle heteromeric enzyme complex|0045239||IEA;go_function=fumarate hydratase activity|0004333||IEA;go_process=fumarate metabolic process|0006106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460430.1;locus_tag=C9F05_RS10670;product=class II fumarate hydratase;protein_id=WP_023993247.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	13955	14884	.	-	.	ID=gene-C9F05_RS10675;Name=tus;gbkey=Gene;gene=tus;gene_biotype=protein_coding;locus_tag=C9F05_RS10675;old_locus_tag=C9F05_10940
NZ_PYKE01000147.1	Protein Homology	CDS	13955	14884	.	-	0	ID=cds-WP_080203984.1;Parent=gene-C9F05_RS10675;Dbxref=GenBank:WP_080203984.1;Name=WP_080203984.1;Ontology_term=GO:0006274,GO:0003677,GO:0005737;gbkey=CDS;gene=tus;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA replication termination|0006274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460431.1;locus_tag=C9F05_RS10675;product=DNA replication terminus site-binding protein;protein_id=WP_080203984.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	14960	16261	.	-	.	ID=gene-C9F05_RS10680;Name=rstB;gbkey=Gene;gene=rstB;gene_biotype=protein_coding;locus_tag=C9F05_RS10680;old_locus_tag=C9F05_10945
NZ_PYKE01000147.1	Protein Homology	CDS	14960	16261	.	-	0	ID=cds-WP_080203983.1;Parent=gene-C9F05_RS10680;Dbxref=GenBank:WP_080203983.1;Name=WP_080203983.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=rstB;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460432.1;locus_tag=C9F05_RS10680;product=two-component system sensor histidine kinase RstB;protein_id=WP_080203983.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	16372	18078	.	-	.	ID=gene-C9F05_RS10685;Name=C9F05_RS10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS10685;old_locus_tag=C9F05_10950
NZ_PYKE01000147.1	Protein Homology	CDS	16372	18078	.	-	0	ID=cds-WP_135370260.1;Parent=gene-C9F05_RS10685;Dbxref=GenBank:WP_135370260.1;Name=WP_135370260.1;Ontology_term=GO:0016810,GO:0046872;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460433.1;locus_tag=C9F05_RS10685;product=amidohydrolase;protein_id=WP_135370260.1;transl_table=11
NZ_PYKE01000147.1	RefSeq	gene	18231	19376	.	-	.	ID=gene-C9F05_RS10690;Name=ompS2;gbkey=Gene;gene=ompS2;gene_biotype=protein_coding;locus_tag=C9F05_RS10690;old_locus_tag=C9F05_10955
NZ_PYKE01000147.1	Protein Homology	CDS	18231	19376	.	-	0	ID=cds-WP_135370261.1;Parent=gene-C9F05_RS10690;Dbxref=GenBank:WP_135370261.1;Name=WP_135370261.1;gbkey=CDS;gene=ompS2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460434.1;locus_tag=C9F05_RS10690;product=porin OmpS2;protein_id=WP_135370261.1;transl_table=11
##sequence-region NZ_PYKE01000330.1 1 812
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000330.1	RefSeq	region	1	812	.	+	.	ID=NZ_PYKE01000330.1:1..812;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000330.1	RefSeq	gene	1	812	.	+	.	ID=gene-C9F05_RS22500;Name=C9F05_RS22500;end_range=812,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS22500;old_locus_tag=C9F05_23095;partial=true;start_range=.,1
NZ_PYKE01000330.1	GeneMarkS-2+	CDS	1	812	.	+	1	ID=cds-WP_255121312.1;Parent=gene-C9F05_RS22500;Dbxref=GenBank:WP_255121312.1;Name=WP_255121312.1;end_range=812,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS22500;partial=true;product=MATE family efflux transporter;protein_id=WP_255121312.1;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000304.1 1 801
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000304.1	RefSeq	region	1	801	.	+	.	ID=NZ_PYKE01000304.1:1..801;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000304.1	RefSeq	gene	59	801	.	+	.	ID=gene-C9F05_RS20725;Name=C9F05_RS20725;end_range=801,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20725;old_locus_tag=C9F05_21305;partial=true
NZ_PYKE01000304.1	Protein Homology	CDS	59	801	.	+	0	ID=cds-WP_167854928.1;Parent=gene-C9F05_RS20725;Dbxref=GenBank:WP_167854928.1;Name=WP_167854928.1;end_range=801,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001017745.1;locus_tag=C9F05_RS20725;partial=true;product=ElaD/SseL family deubiquitinase;protein_id=WP_167854928.1;transl_table=11
##sequence-region NZ_PYKE01000173.1 1 771
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000173.1	RefSeq	region	1	771	.	+	.	ID=NZ_PYKE01000173.1:1..771;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000173.1	RefSeq	gene	72	771	.	-	.	ID=gene-C9F05_RS11810;Name=C9F05_RS11810;end_range=771,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS11810;old_locus_tag=C9F05_12145;partial=true
NZ_PYKE01000173.1	Protein Homology	CDS	72	771	.	-	1	ID=cds-WP_135370306.1;Parent=gene-C9F05_RS11810;Dbxref=GenBank:WP_135370306.1;Name=WP_135370306.1;Ontology_term=GO:0003677;end_range=771,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001120270.1;locus_tag=C9F05_RS11810;partial=true;product=ComEA family DNA-binding protein;protein_id=WP_135370306.1;transl_table=11
##sequence-region NZ_PYKE01000085.1 1 19251
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000085.1	RefSeq	region	1	19251	.	+	.	ID=NZ_PYKE01000085.1:1..19251;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000085.1	RefSeq	pseudogene	54	269	.	+	.	ID=gene-C9F05_RS05800;Name=C9F05_RS05800;end_range=269,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS05800;old_locus_tag=C9F05_05910;partial=true;pseudo=true
NZ_PYKE01000085.1	Protein Homology	CDS	54	269	.	+	0	ID=cds-C9F05_RS05800;Parent=gene-C9F05_RS05800;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=269,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459105.1;locus_tag=C9F05_RS05800;partial=true;product=DUF4751 family protein;pseudo=true;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	342	746	.	-	.	ID=gene-C9F05_RS05805;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=C9F05_RS05805;old_locus_tag=C9F05_05915
NZ_PYKE01000085.1	Protein Homology	CDS	342	746	.	-	0	ID=cds-WP_001169102.1;Parent=gene-C9F05_RS05805;Dbxref=GenBank:WP_001169102.1;Name=WP_001169102.1;Ontology_term=GO:0004803;gbkey=CDS;gene=tnpA;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_021141233.1;locus_tag=C9F05_RS05805;product=IS200/IS605 family transposase;protein_id=WP_001169102.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	805	2010	.	+	.	ID=gene-C9F05_RS05810;Name=C9F05_RS05810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05810;old_locus_tag=C9F05_05920
NZ_PYKE01000085.1	Protein Homology	CDS	805	2010	.	+	0	ID=cds-WP_167851651.1;Parent=gene-C9F05_RS05810;Dbxref=GenBank:WP_167851651.1;Name=WP_167851651.1;Ontology_term=GO:0006310,GO:0032196,GO:0003677,GO:0004519,GO:0046872;gbkey=CDS;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;go_process=DNA recombination|0006310||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001669153.1;locus_tag=C9F05_RS05810;product=RNA-guided endonuclease InsQ/TnpB family protein;protein_id=WP_167851651.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	pseudogene	2076	2291	.	+	.	ID=gene-C9F05_RS05815;Name=C9F05_RS05815;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS05815;old_locus_tag=C9F05_05925;partial=true;pseudo=true;start_range=.,2076
NZ_PYKE01000085.1	Protein Homology	CDS	2076	2291	.	+	0	ID=cds-C9F05_RS05815;Parent=gene-C9F05_RS05815;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459105.1;locus_tag=C9F05_RS05815;partial=true;product=DUF4751 family protein;pseudo=true;start_range=.,2076;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	2297	2992	.	-	.	ID=gene-C9F05_RS05820;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=C9F05_RS05820;old_locus_tag=C9F05_05930
NZ_PYKE01000085.1	Protein Homology	CDS	2297	2992	.	-	0	ID=cds-WP_000888682.1;Parent=gene-C9F05_RS05820;Dbxref=GenBank:WP_000888682.1;Name=WP_000888682.1;Ontology_term=GO:0019568,GO:0008270,GO:0008742;gbkey=CDS;gene=araD;go_function=zinc ion binding|0008270||IEA,L-ribulose-phosphate 4-epimerase activity|0008742||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459106.1;locus_tag=C9F05_RS05820;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_000888682.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	3133	4635	.	-	.	ID=gene-C9F05_RS05825;Name=araA;gbkey=Gene;gene=araA;gene_biotype=protein_coding;locus_tag=C9F05_RS05825;old_locus_tag=C9F05_05935
NZ_PYKE01000085.1	Protein Homology	CDS	3133	4635	.	-	0	ID=cds-WP_052934887.1;Parent=gene-C9F05_RS05825;Dbxref=GenBank:WP_052934887.1;Name=WP_052934887.1;Ontology_term=GO:0005996,GO:0008733;gbkey=CDS;gene=araA;go_function=L-arabinose isomerase activity|0008733||IEA;go_process=monosaccharide metabolic process|0005996||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459107.1;locus_tag=C9F05_RS05825;product=L-arabinose isomerase;protein_id=WP_052934887.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	4646	6355	.	-	.	ID=gene-C9F05_RS05830;Name=araB;gbkey=Gene;gene=araB;gene_biotype=protein_coding;locus_tag=C9F05_RS05830;old_locus_tag=C9F05_05940
NZ_PYKE01000085.1	Protein Homology	CDS	4646	6355	.	-	0	ID=cds-WP_023243395.1;Parent=gene-C9F05_RS05830;Dbxref=GenBank:WP_023243395.1;Name=WP_023243395.1;Ontology_term=GO:0019568,GO:0005524,GO:0008741;gbkey=CDS;gene=araB;go_function=ATP binding|0005524||IEA,ribulokinase activity|0008741||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459108.1;locus_tag=C9F05_RS05830;product=ribulokinase;protein_id=WP_023243395.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	6696	7541	.	+	.	ID=gene-C9F05_RS05835;Name=araC;gbkey=Gene;gene=araC;gene_biotype=protein_coding;locus_tag=C9F05_RS05835;old_locus_tag=C9F05_05945
NZ_PYKE01000085.1	Protein Homology	CDS	6696	7541	.	+	0	ID=cds-WP_000852387.1;Parent=gene-C9F05_RS05835;Dbxref=GenBank:WP_000852387.1;Name=WP_000852387.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=araC;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459109.1;locus_tag=C9F05_RS05835;product=arabinose operon transcriptional regulator AraC;protein_id=WP_000852387.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	7660	8427	.	+	.	ID=gene-C9F05_RS05840;Name=C9F05_RS05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS05840;old_locus_tag=C9F05_05950
NZ_PYKE01000085.1	Protein Homology	CDS	7660	8427	.	+	0	ID=cds-WP_001148369.1;Parent=gene-C9F05_RS05840;Dbxref=GenBank:WP_001148369.1;Name=WP_001148369.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459110.1;locus_tag=C9F05_RS05840;product=DedA family protein;protein_id=WP_001148369.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	8466	9173	.	-	.	ID=gene-C9F05_RS05845;Name=thiQ;gbkey=Gene;gene=thiQ;gene_biotype=protein_coding;locus_tag=C9F05_RS05845;old_locus_tag=C9F05_05955
NZ_PYKE01000085.1	Protein Homology	CDS	8466	9173	.	-	0	ID=cds-WP_000915976.1;Parent=gene-C9F05_RS05845;Dbxref=GenBank:WP_000915976.1;Name=WP_000915976.1;gbkey=CDS;gene=thiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459111.1;locus_tag=C9F05_RS05845;product=thiamine ABC transporter ATP-binding protein ThiQ;protein_id=WP_000915976.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	9157	10767	.	-	.	ID=gene-C9F05_RS05850;Name=thiP;gbkey=Gene;gene=thiP;gene_biotype=protein_coding;locus_tag=C9F05_RS05850;old_locus_tag=C9F05_05960
NZ_PYKE01000085.1	Protein Homology	CDS	9157	10767	.	-	0	ID=cds-WP_000235635.1;Parent=gene-C9F05_RS05850;Dbxref=GenBank:WP_000235635.1;Name=WP_000235635.1;gbkey=CDS;gene=thiP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459112.1;locus_tag=C9F05_RS05850;product=thiamine/thiamine pyrophosphate ABC transporter permease ThiP;protein_id=WP_000235635.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	10743	11726	.	-	.	ID=gene-C9F05_RS05855;Name=thiB;gbkey=Gene;gene=thiB;gene_biotype=protein_coding;locus_tag=C9F05_RS05855;old_locus_tag=C9F05_05965
NZ_PYKE01000085.1	Protein Homology	CDS	10743	11726	.	-	0	ID=cds-WP_135370104.1;Parent=gene-C9F05_RS05855;Dbxref=GenBank:WP_135370104.1;Name=WP_135370104.1;Ontology_term=GO:0015888,GO:0030975,GO:0048502,GO:0030288,GO:0055052;gbkey=CDS;gene=thiB;go_component=outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=thiamine binding|0030975||IEA,ABC-type thiamine transporter activity|0048502||IEA;go_process=thiamine transport|0015888||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459113.1;locus_tag=C9F05_RS05855;product=thiamine ABC transporter substrate binding subunit;protein_id=WP_135370104.1;transl_table=11
NZ_PYKE01000085.1	cmsearch	riboswitch	11758	11857	.	-	.	ID=id-NZ_PYKE01000085.1:11758..11857;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_PYKE01000085.1	RefSeq	gene	11904	13562	.	-	.	ID=gene-C9F05_RS05860;Name=sgrR;gbkey=Gene;gene=sgrR;gene_biotype=protein_coding;locus_tag=C9F05_RS05860;old_locus_tag=C9F05_05970
NZ_PYKE01000085.1	Protein Homology	CDS	11904	13562	.	-	0	ID=cds-WP_039513877.1;Parent=gene-C9F05_RS05860;Dbxref=GenBank:WP_039513877.1;Name=WP_039513877.1;gbkey=CDS;gene=sgrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459114.1;locus_tag=C9F05_RS05860;product=HTH-type transcriptional regulator SgrR;protein_id=WP_039513877.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	13655	13777	.	+	.	ID=gene-C9F05_RS05865;Name=sgrT;gbkey=Gene;gene=sgrT;gene_biotype=protein_coding;locus_tag=C9F05_RS05865;old_locus_tag=C9F05_05975
NZ_PYKE01000085.1	Protein Homology	CDS	13655	13777	.	+	0	ID=cds-WP_000553886.1;Parent=gene-C9F05_RS05865;Dbxref=GenBank:WP_000553886.1;Name=WP_000553886.1;Ontology_term=GO:0046325;gbkey=CDS;gene=sgrT;go_process=negative regulation of D-glucose import|0046325||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001248755.1;locus_tag=C9F05_RS05865;product=glucose uptake inhibitor SgrT;protein_id=WP_000553886.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	14113	14718	.	-	.	ID=gene-C9F05_RS05870;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=C9F05_RS05870;old_locus_tag=C9F05_05980
NZ_PYKE01000085.1	Protein Homology	CDS	14113	14718	.	-	0	ID=cds-WP_000818267.1;Parent=gene-C9F05_RS05870;Dbxref=GenBank:WP_000818267.1;Name=WP_000818267.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459115.1;locus_tag=C9F05_RS05870;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_000818267.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	14729	16129	.	-	.	ID=gene-C9F05_RS05875;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=C9F05_RS05875;old_locus_tag=C9F05_05985
NZ_PYKE01000085.1	Protein Homology	CDS	14729	16129	.	-	0	ID=cds-WP_001140626.1;Parent=gene-C9F05_RS05875;Dbxref=GenBank:WP_001140626.1;Name=WP_001140626.1;Ontology_term=GO:0009098,GO:0003861,GO:0051539,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459116.1;locus_tag=C9F05_RS05875;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_001140626.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	16132	17223	.	-	.	ID=gene-C9F05_RS05880;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=C9F05_RS05880;old_locus_tag=C9F05_05990
NZ_PYKE01000085.1	Protein Homology	CDS	16132	17223	.	-	0	ID=cds-WP_000042325.1;Parent=gene-C9F05_RS05880;Dbxref=GenBank:WP_000042325.1;Name=WP_000042325.1;Ontology_term=GO:0009098,GO:0003862;gbkey=CDS;gene=leuB;go_function=3-isopropylmalate dehydrogenase activity|0003862||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124544.1;locus_tag=C9F05_RS05880;product=3-isopropylmalate dehydrogenase;protein_id=WP_000042325.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	17223	18794	.	-	.	ID=gene-C9F05_RS05885;Name=leuA;gbkey=Gene;gene=leuA;gene_biotype=protein_coding;locus_tag=C9F05_RS05885;old_locus_tag=C9F05_05995
NZ_PYKE01000085.1	Protein Homology	CDS	17223	18794	.	-	0	ID=cds-WP_000082819.1;Parent=gene-C9F05_RS05885;Dbxref=GenBank:WP_000082819.1;Name=WP_000082819.1;Ontology_term=GO:0019752,GO:0003852;gbkey=CDS;gene=leuA;go_function=2-isopropylmalate synthase activity|0003852||IEA;go_process=carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016831521.1;locus_tag=C9F05_RS05885;product=2-isopropylmalate synthase;protein_id=WP_000082819.1;transl_table=11
NZ_PYKE01000085.1	RefSeq	gene	18882	18968	.	-	.	ID=gene-C9F05_RS05890;Name=leuL;gbkey=Gene;gene=leuL;gene_biotype=protein_coding;locus_tag=C9F05_RS05890;old_locus_tag=C9F05_06000
NZ_PYKE01000085.1	Protein Homology	CDS	18882	18968	.	-	0	ID=cds-WP_001575587.1;Parent=gene-C9F05_RS05890;Dbxref=GenBank:WP_001575587.1;Name=WP_001575587.1;gbkey=CDS;gene=leuL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459119.1;locus_tag=C9F05_RS05890;product=leu operon leader peptide;protein_id=WP_001575587.1;transl_table=11
##sequence-region NZ_PYKE01000113.1 1 744
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000113.1	RefSeq	region	1	744	.	+	.	ID=NZ_PYKE01000113.1:1..744;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000113.1	RefSeq	pseudogene	215	417	.	-	.	ID=gene-C9F05_RS23765;Name=C9F05_RS23765;end_range=417,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS23765;partial=true;pseudo=true;start_range=.,215
NZ_PYKE01000113.1	Protein Homology	CDS	215	417	.	-	0	ID=cds-C9F05_RS23765;Parent=gene-C9F05_RS23765;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=417,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612087.1;locus_tag=C9F05_RS23765;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,215;transl_table=11
NZ_PYKE01000113.1	RefSeq	gene	408	533	.	+	.	ID=gene-C9F05_RS23770;Name=C9F05_RS23770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS23770;old_locus_tag=C9F05_08630
NZ_PYKE01000113.1	Protein Homology	CDS	408	533	.	+	0	ID=cds-WP_000457876.1;Parent=gene-C9F05_RS23770;Dbxref=GenBank:WP_000457876.1;Name=WP_000457876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000457876.1;locus_tag=C9F05_RS23770;product=hypothetical protein;protein_id=WP_000457876.1;transl_table=11
##sequence-region NZ_PYKE01000024.1 1 739
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000024.1	RefSeq	region	1	739	.	+	.	ID=NZ_PYKE01000024.1:1..739;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000024.1	RefSeq	pseudogene	1	739	.	+	.	ID=gene-C9F05_RS01025;Name=C9F05_RS01025;end_range=739,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=C9F05_RS01025;old_locus_tag=C9F05_01035;partial=true;pseudo=true;start_range=.,1
NZ_PYKE01000024.1	Protein Homology	CDS	1	739	.	+	1	ID=cds-C9F05_RS01025;Parent=gene-C9F05_RS01025;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=739,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459433.1;locus_tag=C9F05_RS01025;partial=true;product=SEL1-like repeat protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_PYKE01000295.1 1 60242
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2565187
NZ_PYKE01000295.1	RefSeq	region	1	60242	.	+	.	ID=NZ_PYKE01000295.1:1..60242;Dbxref=taxon:2565187;collected-by=Chelea Matchawe;collection-date=2014-11-01;country=Cameroon: Yaounde;gbkey=Src;genome=genomic;isolation-source=Abattoir;lat-lon=3.52 N 11.31 E;mol_type=genomic DNA;nat-host=Bovine;serovar=Wernigerode;strain=32evb;sub-species=enterica
NZ_PYKE01000295.1	RefSeq	gene	123	689	.	-	.	ID=gene-C9F05_RS19890;Name=gmhB;gbkey=Gene;gene=gmhB;gene_biotype=protein_coding;locus_tag=C9F05_RS19890;old_locus_tag=C9F05_20445
NZ_PYKE01000295.1	Protein Homology	CDS	123	689	.	-	0	ID=cds-WP_023993926.1;Parent=gene-C9F05_RS19890;Dbxref=GenBank:WP_023993926.1;Name=WP_023993926.1;Ontology_term=GO:0005975,GO:0016791;gbkey=CDS;gene=gmhB;go_function=phosphatase activity|0016791||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459252.1;locus_tag=C9F05_RS19890;product=D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate 7-phosphatase;protein_id=WP_023993926.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	879	1910	.	+	.	ID=gene-C9F05_RS19895;Name=metN;gbkey=Gene;gene=metN;gene_biotype=protein_coding;locus_tag=C9F05_RS19895;old_locus_tag=C9F05_20450
NZ_PYKE01000295.1	Protein Homology	CDS	879	1910	.	+	0	ID=cds-WP_000594017.1;Parent=gene-C9F05_RS19895;Dbxref=GenBank:WP_000594017.1;Name=WP_000594017.1;Ontology_term=GO:0048473,GO:0005524,GO:0033232,GO:0009276;gbkey=CDS;gene=metN;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA;go_function=ATP binding|0005524||IEA,ABC-type D-methionine transporter activity|0033232||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014168731.1;locus_tag=C9F05_RS19895;product=methionine ABC transporter ATP-binding protein MetN;protein_id=WP_000594017.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	1903	2556	.	+	.	ID=gene-C9F05_RS19900;Name=C9F05_RS19900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19900;old_locus_tag=C9F05_20455
NZ_PYKE01000295.1	Protein Homology	CDS	1903	2556	.	+	0	ID=cds-WP_001287486.1;Parent=gene-C9F05_RS19900;Dbxref=GenBank:WP_001287486.1;Name=WP_001287486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132073.1;locus_tag=C9F05_RS19900;product=methionine ABC transporter permease MetI;protein_id=WP_001287486.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	2595	3410	.	+	.	ID=gene-C9F05_RS19905;Name=metQ;gbkey=Gene;gene=metQ;gene_biotype=protein_coding;locus_tag=C9F05_RS19905;old_locus_tag=C9F05_20460
NZ_PYKE01000295.1	Protein Homology	CDS	2595	3410	.	+	0	ID=cds-WP_135370573.1;Parent=gene-C9F05_RS19905;Dbxref=GenBank:WP_135370573.1;Name=WP_135370573.1;gbkey=CDS;gene=metQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459249.1;locus_tag=C9F05_RS19905;product=methionine ABC transporter substrate-binding lipoprotein MetQ;protein_id=WP_135370573.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	3529	3933	.	+	.	ID=gene-C9F05_RS19910;Name=rcsF;gbkey=Gene;gene=rcsF;gene_biotype=protein_coding;locus_tag=C9F05_RS19910;old_locus_tag=C9F05_20465
NZ_PYKE01000295.1	Protein Homology	CDS	3529	3933	.	+	0	ID=cds-WP_001202315.1;Parent=gene-C9F05_RS19910;Dbxref=GenBank:WP_001202315.1;Name=WP_001202315.1;gbkey=CDS;gene=rcsF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459248.1;locus_tag=C9F05_RS19910;product=Rcs stress response system protein RcsF;protein_id=WP_001202315.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	3930	4637	.	+	.	ID=gene-C9F05_RS19915;Name=tsaA;gbkey=Gene;gene=tsaA;gene_biotype=protein_coding;locus_tag=C9F05_RS19915;old_locus_tag=C9F05_20470
NZ_PYKE01000295.1	Protein Homology	CDS	3930	4637	.	+	0	ID=cds-WP_000093988.1;Parent=gene-C9F05_RS19915;Dbxref=GenBank:WP_000093988.1;Name=WP_000093988.1;Ontology_term=GO:0006400,GO:0008757,GO:0005737;gbkey=CDS;gene=tsaA;go_component=cytoplasm|0005737||IEA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459247.1;locus_tag=C9F05_RS19915;product=tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO;protein_id=WP_000093988.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	4748	6466	.	+	.	ID=gene-C9F05_RS19920;Name=proS;gbkey=Gene;gene=proS;gene_biotype=protein_coding;locus_tag=C9F05_RS19920;old_locus_tag=C9F05_20475
NZ_PYKE01000295.1	Protein Homology	CDS	4748	6466	.	+	0	ID=cds-WP_001260688.1;Parent=gene-C9F05_RS19920;Dbxref=GenBank:WP_001260688.1;Name=WP_001260688.1;Ontology_term=GO:0006433,GO:0004827,GO:0005524,GO:0005737;gbkey=CDS;gene=proS;go_component=cytoplasm|0005737||IEA;go_function=proline-tRNA ligase activity|0004827||IEA,ATP binding|0005524||IEA;go_process=prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133963.1;locus_tag=C9F05_RS19920;product=proline--tRNA ligase;protein_id=WP_001260688.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	6540	7241	.	-	.	ID=gene-C9F05_RS19925;Name=nlpE;gbkey=Gene;gene=nlpE;gene_biotype=protein_coding;gene_synonym=cutF;locus_tag=C9F05_RS19925;old_locus_tag=C9F05_20480
NZ_PYKE01000295.1	Protein Homology	CDS	6540	7241	.	-	0	ID=cds-WP_000252575.1;Parent=gene-C9F05_RS19925;Dbxref=GenBank:WP_000252575.1;Name=WP_000252575.1;Note=NlpE%2C an outer membrane lipoprotein%2C interacts directly with CpxA%2C the sensor histidine kinase of the Cpx system for response to envelope stress.;gbkey=CDS;gene=nlpE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006899150.1;locus_tag=C9F05_RS19925;product=envelope stress response activation lipoprotein NlpE;protein_id=WP_000252575.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	7273	7695	.	-	.	ID=gene-C9F05_RS19930;Name=arfB;gbkey=Gene;gene=arfB;gene_biotype=protein_coding;locus_tag=C9F05_RS19930;old_locus_tag=C9F05_20485
NZ_PYKE01000295.1	Protein Homology	CDS	7273	7695	.	-	0	ID=cds-WP_000560527.1;Parent=gene-C9F05_RS19930;Dbxref=GenBank:WP_000560527.1;Name=WP_000560527.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=arfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459245.1;locus_tag=C9F05_RS19930;product=alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB;protein_id=WP_000560527.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	7692	8237	.	-	.	ID=gene-C9F05_RS19935;Name=C9F05_RS19935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19935;old_locus_tag=C9F05_20490
NZ_PYKE01000295.1	Protein Homology	CDS	7692	8237	.	-	0	ID=cds-WP_001185319.1;Parent=gene-C9F05_RS19935;Dbxref=GenBank:WP_001185319.1;Name=WP_001185319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459244.1;locus_tag=C9F05_RS19935;product=YaeQ family protein;protein_id=WP_001185319.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	8435	8635	.	+	.	ID=gene-C9F05_RS19940;Name=C9F05_RS19940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19940;old_locus_tag=C9F05_20495
NZ_PYKE01000295.1	Protein Homology	CDS	8435	8635	.	+	0	ID=cds-WP_001518678.1;Parent=gene-C9F05_RS19940;Dbxref=GenBank:WP_001518678.1;Name=WP_001518678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133967.1;locus_tag=C9F05_RS19940;product=YaeP family protein;protein_id=WP_001518678.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	8622	8882	.	+	.	ID=gene-C9F05_RS19945;Name=rof;gbkey=Gene;gene=rof;gene_biotype=protein_coding;locus_tag=C9F05_RS19945;old_locus_tag=C9F05_20500
NZ_PYKE01000295.1	Protein Homology	CDS	8622	8882	.	+	0	ID=cds-WP_000062330.1;Parent=gene-C9F05_RS19945;Dbxref=GenBank:WP_000062330.1;Name=WP_000062330.1;gbkey=CDS;gene=rof;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459242.1;locus_tag=C9F05_RS19945;product=Rho-binding antiterminator;protein_id=WP_000062330.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	8966	10258	.	-	.	ID=gene-C9F05_RS19950;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=C9F05_RS19950;old_locus_tag=C9F05_20505
NZ_PYKE01000295.1	Protein Homology	CDS	8966	10258	.	-	0	ID=cds-WP_000210056.1;Parent=gene-C9F05_RS19950;Dbxref=GenBank:WP_000210056.1;Name=WP_000210056.1;Ontology_term=GO:0008033,GO:0000166,GO:0005524,GO:0016879;gbkey=CDS;gene=tilS;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA,ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459241.1;locus_tag=C9F05_RS19950;product=tRNA lysidine(34) synthetase TilS;protein_id=WP_000210056.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	10321	10710	.	-	.	ID=gene-C9F05_RS19955;Name=C9F05_RS19955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19955;old_locus_tag=C9F05_20510
NZ_PYKE01000295.1	Protein Homology	CDS	10321	10710	.	-	0	ID=cds-WP_000901086.1;Parent=gene-C9F05_RS19955;Dbxref=GenBank:WP_000901086.1;Name=WP_000901086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459240.1;locus_tag=C9F05_RS19955;product=VOC family protein;protein_id=WP_000901086.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	10766	12907	.	-	.	ID=gene-C9F05_RS19960;Name=ldcC;gbkey=Gene;gene=ldcC;gene_biotype=protein_coding;locus_tag=C9F05_RS19960;old_locus_tag=C9F05_20515
NZ_PYKE01000295.1	Protein Homology	CDS	10766	12907	.	-	0	ID=cds-WP_135370574.1;Parent=gene-C9F05_RS19960;Dbxref=GenBank:WP_135370574.1;Name=WP_135370574.1;gbkey=CDS;gene=ldcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459239.1;locus_tag=C9F05_RS19960;product=lysine decarboxylase LdcC;protein_id=WP_135370574.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	12983	14746	.	-	.	ID=gene-C9F05_RS19965;Name=C9F05_RS19965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS19965;old_locus_tag=C9F05_20520
NZ_PYKE01000295.1	Protein Homology	CDS	12983	14746	.	-	0	ID=cds-WP_000524168.1;Parent=gene-C9F05_RS19965;Dbxref=GenBank:WP_000524168.1;Name=WP_000524168.1;Ontology_term=GO:0006032,GO:0016998,GO:0004568;gbkey=CDS;go_function=chitinase activity|0004568||IEA;go_process=chitin catabolic process|0006032||IEA,cell wall macromolecule catabolic process|0016998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459238.1;locus_tag=C9F05_RS19965;product=chitinase;protein_id=WP_000524168.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	14926	15885	.	-	.	ID=gene-C9F05_RS19970;Name=accA;gbkey=Gene;gene=accA;gene_biotype=protein_coding;locus_tag=C9F05_RS19970;old_locus_tag=C9F05_20525
NZ_PYKE01000295.1	Protein Homology	CDS	14926	15885	.	-	0	ID=cds-WP_000055753.1;Parent=gene-C9F05_RS19970;Dbxref=GenBank:WP_000055753.1;Name=WP_000055753.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accA;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132091.1;locus_tag=C9F05_RS19970;product=acetyl-CoA carboxylase carboxyl transferase subunit alpha;protein_id=WP_000055753.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	15898	19380	.	-	.	ID=gene-C9F05_RS19975;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=C9F05_RS19975;old_locus_tag=C9F05_20530
NZ_PYKE01000295.1	Protein Homology	CDS	15898	19380	.	-	0	ID=cds-WP_001294818.1;Parent=gene-C9F05_RS19975;Dbxref=GenBank:WP_001294818.1;Name=WP_001294818.1;Ontology_term=GO:0006260,GO:0003676,GO:0008408;gbkey=CDS;gene=dnaE;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459236.1;locus_tag=C9F05_RS19975;product=DNA polymerase III subunit alpha;protein_id=WP_001294818.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	19404	20000	.	-	.	ID=gene-C9F05_RS19980;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=C9F05_RS19980;old_locus_tag=C9F05_20535
NZ_PYKE01000295.1	Protein Homology	CDS	19404	20000	.	-	0	ID=cds-WP_000569412.1;Parent=gene-C9F05_RS19980;Dbxref=GenBank:WP_000569412.1;Name=WP_000569412.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;gene=rnhB;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459235.1;locus_tag=C9F05_RS19980;product=ribonuclease HII;protein_id=WP_000569412.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	19997	21145	.	-	.	ID=gene-C9F05_RS19985;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=C9F05_RS19985;old_locus_tag=C9F05_20540
NZ_PYKE01000295.1	Protein Homology	CDS	19997	21145	.	-	0	ID=cds-WP_135370575.1;Parent=gene-C9F05_RS19985;Dbxref=GenBank:WP_135370575.1;Name=WP_135370575.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;gene=lpxB;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459234.1;locus_tag=C9F05_RS19985;product=lipid-A-disaccharide synthase;protein_id=WP_135370575.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	21145	21933	.	-	.	ID=gene-C9F05_RS19990;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=C9F05_RS19990;old_locus_tag=C9F05_20545
NZ_PYKE01000295.1	Protein Homology	CDS	21145	21933	.	-	0	ID=cds-WP_000565950.1;Parent=gene-C9F05_RS19990;Dbxref=GenBank:WP_000565950.1;Name=WP_000565950.1;Ontology_term=GO:0008610,GO:0008780;gbkey=CDS;gene=lpxA;go_function=acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|0008780||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132096.1;locus_tag=C9F05_RS19990;product=acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_000565950.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	21937	22392	.	-	.	ID=gene-C9F05_RS19995;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=C9F05_RS19995;old_locus_tag=C9F05_20550
NZ_PYKE01000295.1	Protein Homology	CDS	21937	22392	.	-	0	ID=cds-WP_000210741.1;Parent=gene-C9F05_RS19995;Dbxref=GenBank:WP_000210741.1;Name=WP_000210741.1;gbkey=CDS;gene=fabZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000210741.1;locus_tag=C9F05_RS19995;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_000210741.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	22498	23523	.	-	.	ID=gene-C9F05_RS20000;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=C9F05_RS20000;old_locus_tag=C9F05_20555
NZ_PYKE01000295.1	Protein Homology	CDS	22498	23523	.	-	0	ID=cds-WP_001139265.1;Parent=gene-C9F05_RS20000;Dbxref=GenBank:WP_001139265.1;Name=WP_001139265.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;gene=lpxD;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132101.1;locus_tag=C9F05_RS20000;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_001139265.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	23527	24012	.	-	.	ID=gene-C9F05_RS20005;Name=skp;gbkey=Gene;gene=skp;gene_biotype=protein_coding;gene_synonym=hlpA,ompH;locus_tag=C9F05_RS20005;old_locus_tag=C9F05_20560
NZ_PYKE01000295.1	Protein Homology	CDS	23527	24012	.	-	0	ID=cds-WP_000758966.1;Parent=gene-C9F05_RS20005;Dbxref=GenBank:WP_000758966.1;Name=WP_000758966.1;gbkey=CDS;gene=skp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459230.1;locus_tag=C9F05_RS20005;product=molecular chaperone Skp;protein_id=WP_000758966.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	24135	26546	.	-	.	ID=gene-C9F05_RS20010;Name=bamA;gbkey=Gene;gene=bamA;gene_biotype=protein_coding;locus_tag=C9F05_RS20010;old_locus_tag=C9F05_20565
NZ_PYKE01000295.1	Protein Homology	CDS	24135	26546	.	-	0	ID=cds-WP_001240922.1;Parent=gene-C9F05_RS20010;Dbxref=GenBank:WP_001240922.1;Name=WP_001240922.1;Ontology_term=GO:0071709,GO:0009279;gbkey=CDS;gene=bamA;go_component=cell outer membrane|0009279||IEA;go_process=membrane assembly|0071709||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459229.1;locus_tag=C9F05_RS20010;product=outer membrane protein assembly factor BamA;protein_id=WP_001240922.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	26578	27930	.	-	.	ID=gene-C9F05_RS20015;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=C9F05_RS20015;old_locus_tag=C9F05_20570
NZ_PYKE01000295.1	Protein Homology	CDS	26578	27930	.	-	0	ID=cds-WP_000949017.1;Parent=gene-C9F05_RS20015;Dbxref=GenBank:WP_000949017.1;Name=WP_000949017.1;Ontology_term=GO:0006508,GO:0004222,GO:0005515,GO:0016020;gbkey=CDS;gene=rseP;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132106.1;locus_tag=C9F05_RS20015;product=sigma E protease regulator RseP;protein_id=WP_000949017.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	27942	28799	.	-	.	ID=gene-C9F05_RS20020;Name=cdsA;gbkey=Gene;gene=cdsA;gene_biotype=protein_coding;locus_tag=C9F05_RS20020;old_locus_tag=C9F05_20575
NZ_PYKE01000295.1	Protein Homology	CDS	27942	28799	.	-	0	ID=cds-WP_000922422.1;Parent=gene-C9F05_RS20020;Dbxref=GenBank:WP_000922422.1;Name=WP_000922422.1;Ontology_term=GO:0016772;gbkey=CDS;gene=cdsA;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459227.1;locus_tag=C9F05_RS20020;product=phosphatidate cytidylyltransferase;protein_id=WP_000922422.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	28812	29570	.	-	.	ID=gene-C9F05_RS20025;Name=ispU;gbkey=Gene;gene=ispU;gene_biotype=protein_coding;gene_synonym=uppS;locus_tag=C9F05_RS20025;old_locus_tag=C9F05_20580
NZ_PYKE01000295.1	Protein Homology	CDS	28812	29570	.	-	0	ID=cds-WP_000947413.1;Parent=gene-C9F05_RS20025;Dbxref=GenBank:WP_000947413.1;Name=WP_000947413.1;Ontology_term=GO:0043164,GO:0004659,GO:0008834;gbkey=CDS;gene=ispU;go_function=prenyltransferase activity|0004659||IEA,ditrans%2Cpolycis-undecaprenyl-diphosphate synthase [(2E%2C6E)-farnesyl-diphosphate specific] activity|0008834||IEA;go_process=Gram-negative-bacterium-type cell wall biogenesis|0043164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459226.1;locus_tag=C9F05_RS20025;product=(2E%2C6E)-farnesyl-diphosphate-specific ditrans%2Cpolycis-undecaprenyl-diphosphate synthase;protein_id=WP_000947413.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	29883	31079	.	-	.	ID=gene-C9F05_RS20030;Name=ispC;gbkey=Gene;gene=ispC;gene_biotype=protein_coding;locus_tag=C9F05_RS20030;old_locus_tag=C9F05_20590
NZ_PYKE01000295.1	Protein Homology	CDS	29883	31079	.	-	0	ID=cds-WP_000811905.1;Parent=gene-C9F05_RS20030;Dbxref=GenBank:WP_000811905.1;Name=WP_000811905.1;Ontology_term=GO:0008299,GO:0005515,GO:0030604,GO:0046872,GO:0070402;gbkey=CDS;gene=ispC;go_function=protein binding|0005515||IEA,1-deoxy-D-xylulose-5-phosphate reductoisomerase activity|0030604||IEA,metal ion binding|0046872||IEA,NADPH binding|0070402||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459225.1;locus_tag=C9F05_RS20030;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=WP_000811905.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	31220	31777	.	-	.	ID=gene-C9F05_RS20035;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=C9F05_RS20035;old_locus_tag=C9F05_20595
NZ_PYKE01000295.1	Protein Homology	CDS	31220	31777	.	-	0	ID=cds-WP_000622423.1;Parent=gene-C9F05_RS20035;Dbxref=GenBank:WP_000622423.1;Name=WP_000622423.1;Ontology_term=GO:0006412,GO:0008135;gbkey=CDS;gene=frr;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000622421.1;locus_tag=C9F05_RS20035;product=ribosome recycling factor;protein_id=WP_000622423.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	31924	32649	.	-	.	ID=gene-C9F05_RS20040;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=C9F05_RS20040;old_locus_tag=C9F05_20600
NZ_PYKE01000295.1	Protein Homology	CDS	31924	32649	.	-	0	ID=cds-WP_000224567.1;Parent=gene-C9F05_RS20040;Dbxref=GenBank:WP_000224567.1;Name=WP_000224567.1;Ontology_term=GO:0006221,GO:0015949,GO:0033862,GO:0005737;gbkey=CDS;gene=pyrH;go_component=cytoplasm|0005737||IEA;go_function=UMP kinase activity|0033862||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000224576.1;locus_tag=C9F05_RS20040;product=UMP kinase;protein_id=WP_000224567.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	32794	33645	.	-	.	ID=gene-C9F05_RS20045;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=C9F05_RS20045;old_locus_tag=C9F05_20605
NZ_PYKE01000295.1	Protein Homology	CDS	32794	33645	.	-	0	ID=cds-WP_000808106.1;Parent=gene-C9F05_RS20045;Dbxref=GenBank:WP_000808106.1;Name=WP_000808106.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132116.1;locus_tag=C9F05_RS20045;product=translation elongation factor Ts;protein_id=WP_000808106.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	33903	34628	.	-	.	ID=gene-C9F05_RS20050;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=C9F05_RS20050;old_locus_tag=C9F05_20615
NZ_PYKE01000295.1	Protein Homology	CDS	33903	34628	.	-	0	ID=cds-WP_000246886.1;Parent=gene-C9F05_RS20050;Dbxref=GenBank:WP_000246886.1;Name=WP_000246886.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsB;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132117.1;locus_tag=C9F05_RS20050;product=30S ribosomal protein S2;protein_id=WP_000246886.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	34977	36704	.	+	.	ID=gene-C9F05_RS20055;Name=C9F05_RS20055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20055;old_locus_tag=C9F05_20620
NZ_PYKE01000295.1	GeneMarkS-2+	CDS	34977	36704	.	+	0	ID=cds-WP_024157446.1;Parent=gene-C9F05_RS20055;Dbxref=GenBank:WP_024157446.1;Name=WP_024157446.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=C9F05_RS20055;product=hypothetical protein;protein_id=WP_024157446.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	36838	37632	.	+	.	ID=gene-C9F05_RS20060;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=C9F05_RS20060;old_locus_tag=C9F05_20625
NZ_PYKE01000295.1	Protein Homology	CDS	36838	37632	.	+	0	ID=cds-WP_001018214.1;Parent=gene-C9F05_RS20060;Dbxref=GenBank:WP_001018214.1;Name=WP_001018214.1;Ontology_term=GO:0006508,GO:0070006;gbkey=CDS;gene=map;go_function=metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459220.1;locus_tag=C9F05_RS20060;product=type I methionyl aminopeptidase;protein_id=WP_001018214.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	37870	40542	.	+	.	ID=gene-C9F05_RS20065;Name=glnD;gbkey=Gene;gene=glnD;gene_biotype=protein_coding;locus_tag=C9F05_RS20065;old_locus_tag=C9F05_20635
NZ_PYKE01000295.1	Protein Homology	CDS	37870	40542	.	+	0	ID=cds-WP_135370576.1;Parent=gene-C9F05_RS20065;Dbxref=GenBank:WP_135370576.1;Name=WP_135370576.1;Ontology_term=GO:0008152,GO:0016779;gbkey=CDS;gene=glnD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459219.1;locus_tag=C9F05_RS20065;product=bifunctional uridylyltransferase/uridylyl-removing protein GlnD;protein_id=WP_135370576.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	40572	41396	.	+	.	ID=gene-C9F05_RS20070;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=C9F05_RS20070;old_locus_tag=C9F05_20640
NZ_PYKE01000295.1	Protein Homology	CDS	40572	41396	.	+	0	ID=cds-WP_001186673.1;Parent=gene-C9F05_RS20070;Dbxref=GenBank:WP_001186673.1;Name=WP_001186673.1;Ontology_term=GO:0009089,GO:0008666;gbkey=CDS;gene=dapD;go_function=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase activity|0008666||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132123.1;locus_tag=C9F05_RS20070;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_001186673.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	41433	42734	.	-	.	ID=gene-C9F05_RS20075;Name=C9F05_RS20075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20075;old_locus_tag=C9F05_20645
NZ_PYKE01000295.1	Protein Homology	CDS	41433	42734	.	-	0	ID=cds-WP_000017195.1;Parent=gene-C9F05_RS20075;Dbxref=GenBank:WP_000017195.1;Name=WP_000017195.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459217.1;locus_tag=C9F05_RS20075;product=MFS transporter;protein_id=WP_000017195.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	42981	43367	.	+	.	ID=gene-C9F05_RS20080;Name=C9F05_RS20080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20080;old_locus_tag=C9F05_20650
NZ_PYKE01000295.1	Protein Homology	CDS	42981	43367	.	+	0	ID=cds-WP_000272193.1;Parent=gene-C9F05_RS20080;Dbxref=GenBank:WP_000272193.1;Name=WP_000272193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000272186.1;locus_tag=C9F05_RS20080;product=DUF3461 family protein;protein_id=WP_000272193.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	43456	44613	.	-	.	ID=gene-C9F05_RS20085;Name=cdaR;gbkey=Gene;gene=cdaR;gene_biotype=protein_coding;locus_tag=C9F05_RS20085;old_locus_tag=C9F05_20655
NZ_PYKE01000295.1	Protein Homology	CDS	43456	44613	.	-	0	ID=cds-WP_000929458.1;Parent=gene-C9F05_RS20085;Dbxref=GenBank:WP_000929458.1;Name=WP_000929458.1;gbkey=CDS;gene=cdaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459215.1;locus_tag=C9F05_RS20085;product=DNA-binding transcriptional regulator CdaR;protein_id=WP_000929458.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	44766	46193	.	-	.	ID=gene-C9F05_RS20090;Name=degP;gbkey=Gene;gene=degP;gene_biotype=protein_coding;locus_tag=C9F05_RS20090;old_locus_tag=C9F05_20660
NZ_PYKE01000295.1	Protein Homology	CDS	44766	46193	.	-	0	ID=cds-WP_000753958.1;Parent=gene-C9F05_RS20090;Dbxref=GenBank:WP_000753958.1;Name=WP_000753958.1;gbkey=CDS;gene=degP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459214.1;locus_tag=C9F05_RS20090;product=serine endoprotease DegP;protein_id=WP_000753958.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	46323	47840	.	-	.	ID=gene-C9F05_RS20095;Name=dgt;gbkey=Gene;gene=dgt;gene_biotype=protein_coding;locus_tag=C9F05_RS20095;old_locus_tag=C9F05_20665
NZ_PYKE01000295.1	Protein Homology	CDS	46323	47840	.	-	0	ID=cds-WP_000146450.1;Parent=gene-C9F05_RS20095;Dbxref=GenBank:WP_000146450.1;Name=WP_000146450.1;Ontology_term=GO:0006203,GO:0000287,GO:0008832;gbkey=CDS;gene=dgt;go_function=magnesium ion binding|0000287||IEA,dGTPase activity|0008832||IEA;go_process=dGTP catabolic process|0006203||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459213.1;locus_tag=C9F05_RS20095;product=dGTPase;protein_id=WP_000146450.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	47925	48623	.	+	.	ID=gene-C9F05_RS20100;Name=mtnN;gbkey=Gene;gene=mtnN;gene_biotype=protein_coding;locus_tag=C9F05_RS20100;old_locus_tag=C9F05_20670
NZ_PYKE01000295.1	Protein Homology	CDS	47925	48623	.	+	0	ID=cds-WP_000689824.1;Parent=gene-C9F05_RS20100;Dbxref=GenBank:WP_000689824.1;Name=WP_000689824.1;Ontology_term=GO:0009164,GO:0019509,GO:0008782,GO:0008930;gbkey=CDS;gene=mtnN;go_function=adenosylhomocysteine nucleosidase activity|0008782||IEA,methylthioadenosine nucleosidase activity|0008930||IEA;go_process=nucleoside catabolic process|0009164||IEA,L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459212.1;locus_tag=C9F05_RS20100;product=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase;protein_id=WP_000689824.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	48616	49416	.	+	.	ID=gene-C9F05_RS20105;Name=btuF;gbkey=Gene;gene=btuF;gene_biotype=protein_coding;locus_tag=C9F05_RS20105;old_locus_tag=C9F05_20675
NZ_PYKE01000295.1	Protein Homology	CDS	48616	49416	.	+	0	ID=cds-WP_080232360.1;Parent=gene-C9F05_RS20105;Dbxref=GenBank:WP_080232360.1;Name=WP_080232360.1;Ontology_term=GO:0005524,GO:0031419;gbkey=CDS;gene=btuF;go_function=ATP binding|0005524||IEA,cobalamin binding|0031419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459211.1;locus_tag=C9F05_RS20105;product=vitamin B12 ABC transporter substrate-binding protein BtuF;protein_id=WP_080232360.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	49453	50076	.	+	.	ID=gene-C9F05_RS20110;Name=C9F05_RS20110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20110;old_locus_tag=C9F05_20680
NZ_PYKE01000295.1	Protein Homology	CDS	49453	50076	.	+	0	ID=cds-WP_000964234.1;Parent=gene-C9F05_RS20110;Dbxref=GenBank:WP_000964234.1;Name=WP_000964234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459210.1;locus_tag=C9F05_RS20110;product=TRIC cation channel family protein;protein_id=WP_000964234.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	50177	50521	.	-	.	ID=gene-C9F05_RS20115;Name=erpA;gbkey=Gene;gene=erpA;gene_biotype=protein_coding;locus_tag=C9F05_RS20115;old_locus_tag=C9F05_20685
NZ_PYKE01000295.1	Protein Homology	CDS	50177	50521	.	-	0	ID=cds-WP_001278668.1;Parent=gene-C9F05_RS20115;Dbxref=GenBank:WP_001278668.1;Name=WP_001278668.1;Ontology_term=GO:0016226,GO:0051536;gbkey=CDS;gene=erpA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001295564.1;locus_tag=C9F05_RS20115;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_001278668.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	50603	52024	.	-	.	ID=gene-C9F05_RS20120;Name=clcA;gbkey=Gene;gene=clcA;gene_biotype=protein_coding;locus_tag=C9F05_RS20120;old_locus_tag=C9F05_20690
NZ_PYKE01000295.1	Protein Homology	CDS	50603	52024	.	-	0	ID=cds-WP_000845430.1;Parent=gene-C9F05_RS20120;Dbxref=GenBank:WP_000845430.1;Name=WP_000845430.1;Ontology_term=GO:0006821,GO:0055085,GO:0005247,GO:0005886;gbkey=CDS;gene=clcA;go_component=plasma membrane|0005886||IEA;go_function=voltage-gated chloride channel activity|0005247||IEA;go_process=chloride transport|0006821||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459208.1;locus_tag=C9F05_RS20120;product=H(+)/Cl(-) exchange transporter ClcA;protein_id=WP_000845430.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	52194	53474	.	+	.	ID=gene-C9F05_RS20125;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=C9F05_RS20125;old_locus_tag=C9F05_20695
NZ_PYKE01000295.1	Protein Homology	CDS	52194	53474	.	+	0	ID=cds-WP_000045262.1;Parent=gene-C9F05_RS20125;Dbxref=GenBank:WP_000045262.1;Name=WP_000045262.1;Ontology_term=GO:0033014,GO:0042286;gbkey=CDS;gene=hemL;go_function=glutamate-1-semialdehyde 2%2C1-aminomutase activity|0042286||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233394.1;locus_tag=C9F05_RS20125;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_000045262.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	53582	54421	.	-	.	ID=gene-C9F05_RS20130;Name=stfH;gbkey=Gene;gene=stfH;gene_biotype=protein_coding;locus_tag=C9F05_RS20130;old_locus_tag=C9F05_20700
NZ_PYKE01000295.1	Protein Homology	CDS	53582	54421	.	-	0	ID=cds-WP_000691868.1;Parent=gene-C9F05_RS20130;Dbxref=GenBank:WP_000691868.1;Name=WP_000691868.1;gbkey=CDS;gene=stfH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459206.1;locus_tag=C9F05_RS20130;product=fimbrial adhesin StfH;protein_id=WP_000691868.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	54421	54951	.	-	.	ID=gene-C9F05_RS20135;Name=C9F05_RS20135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20135;old_locus_tag=C9F05_20705
NZ_PYKE01000295.1	Protein Homology	CDS	54421	54951	.	-	0	ID=cds-WP_000239536.1;Parent=gene-C9F05_RS20135;Dbxref=GenBank:WP_000239536.1;Name=WP_000239536.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459205.1;locus_tag=C9F05_RS20135;product=fimbrial protein;protein_id=WP_000239536.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	54951	55427	.	-	.	ID=gene-C9F05_RS20140;Name=stfF;gbkey=Gene;gene=stfF;gene_biotype=protein_coding;locus_tag=C9F05_RS20140;old_locus_tag=C9F05_20710
NZ_PYKE01000295.1	Protein Homology	CDS	54951	55427	.	-	0	ID=cds-WP_000737995.1;Parent=gene-C9F05_RS20140;Dbxref=GenBank:WP_000737995.1;Name=WP_000737995.1;gbkey=CDS;gene=stfF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000725047.1;locus_tag=C9F05_RS20140;product=fimbrial minor subunit StfF;protein_id=WP_000737995.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	55424	55936	.	-	.	ID=gene-C9F05_RS20145;Name=C9F05_RS20145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20145;old_locus_tag=C9F05_20715
NZ_PYKE01000295.1	Protein Homology	CDS	55424	55936	.	-	0	ID=cds-WP_001250314.1;Parent=gene-C9F05_RS20145;Dbxref=GenBank:WP_001250314.1;Name=WP_001250314.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459203.1;locus_tag=C9F05_RS20145;product=fimbrial protein;protein_id=WP_001250314.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	55955	56707	.	-	.	ID=gene-C9F05_RS20150;Name=stfD;gbkey=Gene;gene=stfD;gene_biotype=protein_coding;locus_tag=C9F05_RS20150;old_locus_tag=C9F05_20720
NZ_PYKE01000295.1	Protein Homology	CDS	55955	56707	.	-	0	ID=cds-WP_000982728.1;Parent=gene-C9F05_RS20150;Dbxref=GenBank:WP_000982728.1;Name=WP_000982728.1;gbkey=CDS;gene=stfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459202.1;locus_tag=C9F05_RS20150;product=fimbrial chaperone StfD;protein_id=WP_000982728.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	56725	59382	.	-	.	ID=gene-C9F05_RS20155;Name=C9F05_RS20155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=C9F05_RS20155;old_locus_tag=C9F05_20725
NZ_PYKE01000295.1	Protein Homology	CDS	56725	59382	.	-	0	ID=cds-WP_135370577.1;Parent=gene-C9F05_RS20155;Dbxref=GenBank:WP_135370577.1;Name=WP_135370577.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459201.1;locus_tag=C9F05_RS20155;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_135370577.1;transl_table=11
NZ_PYKE01000295.1	RefSeq	gene	59468	60028	.	-	.	ID=gene-C9F05_RS20160;Name=stfA;gbkey=Gene;gene=stfA;gene_biotype=protein_coding;locus_tag=C9F05_RS20160;old_locus_tag=C9F05_20730
NZ_PYKE01000295.1	Protein Homology	CDS	59468	60028	.	-	0	ID=cds-WP_135370578.1;Parent=gene-C9F05_RS20160;Dbxref=GenBank:WP_135370578.1;Name=WP_135370578.1;gbkey=CDS;gene=stfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459200.1;locus_tag=C9F05_RS20160;product=fimbrial major subunit StfA;protein_id=WP_135370578.1;transl_table=11
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