##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM385963v1 #!genome-build-accession NCBI_Assembly:GCF_003859635.1 #!annotation-date 09/27/2025 09:51:28 #!annotation-source NCBI RefSeq GCF_003859635.1-RS_2025_09_27 ##sequence-region NZ_QYTI01000001.1 1 195395 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000001.1 RefSeq region 1 195395 . + . ID=NZ_QYTI01000001.1:1..195395;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000001.1 RefSeq pseudogene 11 1375 . + . ID=gene-D5F88_RS00005;Name=D5F88_RS00005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS00005;old_locus_tag=D5F88_00005;partial=true;pseudo=true;start_range=.,11 NZ_QYTI01000001.1 Protein Homology CDS 11 1375 . + 0 ID=cds-D5F88_RS00005;Parent=gene-D5F88_RS00005;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0042626,GO:0140359,GO:0016020,GO:0043190,GO:0055052;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000681008.1;locus_tag=D5F88_RS00005;partial=true;product=ABC transporter substrate-binding protein/permease;pseudo=true;start_range=.,11;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 1375 2115 . + . ID=gene-D5F88_RS00010;Name=D5F88_RS00010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00010;old_locus_tag=D5F88_00010 NZ_QYTI01000001.1 Protein Homology CDS 1375 2115 . + 0 ID=cds-WP_000818887.1;Parent=gene-D5F88_RS00010;Dbxref=GenBank:WP_000818887.1;Name=WP_000818887.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003107174.1;locus_tag=D5F88_RS00010;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_000818887.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 2265 2615 . + . ID=gene-D5F88_RS00015;Name=D5F88_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00015;old_locus_tag=D5F88_00015 NZ_QYTI01000001.1 Protein Homology CDS 2265 2615 . + 0 ID=cds-WP_000656279.1;Parent=gene-D5F88_RS00015;Dbxref=GenBank:WP_000656279.1;Name=WP_000656279.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000656279.1;locus_tag=D5F88_RS00015;product=hypothetical protein;protein_id=WP_000656279.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 2708 2866 . - . ID=gene-D5F88_RS00020;Name=D5F88_RS00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00020;old_locus_tag=D5F88_00020 NZ_QYTI01000001.1 Protein Homology CDS 2708 2866 . - 0 ID=cds-WP_000502594.1;Parent=gene-D5F88_RS00020;Dbxref=GenBank:WP_000502594.1;Name=WP_000502594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000502594.1;locus_tag=D5F88_RS00020;product=hypothetical protein;protein_id=WP_000502594.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 2892 4205 . - . ID=gene-D5F88_RS00025;Name=obgE;gbkey=Gene;gene=obgE;gene_biotype=protein_coding;locus_tag=D5F88_RS00025;old_locus_tag=D5F88_00025 NZ_QYTI01000001.1 Protein Homology CDS 2892 4205 . - 0 ID=cds-WP_086163422.1;Parent=gene-D5F88_RS00025;Dbxref=GenBank:WP_086163422.1;Name=WP_086163422.1;Ontology_term=GO:0003924;gbkey=CDS;gene=obgE;go_function=GTPase activity|0003924||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002984148.1;locus_tag=D5F88_RS00025;product=GTPase ObgE;protein_id=WP_086163422.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 4266 4394 . - . ID=gene-D5F88_RS00030;Name=D5F88_RS00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00030;old_locus_tag=D5F88_00030 NZ_QYTI01000001.1 Protein Homology CDS 4266 4394 . - 0 ID=cds-WP_000863865.1;Parent=gene-D5F88_RS00030;Dbxref=GenBank:WP_000863865.1;Name=WP_000863865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000863865.1;locus_tag=D5F88_RS00030;product=DUF4044 domain-containing protein;protein_id=WP_000863865.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 4572 5813 . + . ID=gene-D5F88_RS00035;Name=D5F88_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00035;old_locus_tag=D5F88_00035 NZ_QYTI01000001.1 Protein Homology CDS 4572 5813 . + 0 ID=cds-WP_000244046.1;Parent=gene-D5F88_RS00035;Dbxref=GenBank:WP_000244046.1;Name=WP_000244046.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000244044.1;locus_tag=D5F88_RS00035;product=aminopeptidase;protein_id=WP_000244046.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 5848 6426 . - . ID=gene-D5F88_RS00040;Name=D5F88_RS00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00040;old_locus_tag=D5F88_00040 NZ_QYTI01000001.1 Protein Homology CDS 5848 6426 . - 0 ID=cds-WP_001883402.1;Parent=gene-D5F88_RS00040;Dbxref=GenBank:WP_001883402.1;Name=WP_001883402.1;Ontology_term=GO:0009986;gbkey=CDS;go_component=cell surface|0009986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000865323.1;locus_tag=D5F88_RS00040;product=LPXTG cell wall anchor domain-containing protein;protein_id=WP_001883402.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 6536 8575 . - . ID=gene-D5F88_RS00045;Name=D5F88_RS00045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00045;old_locus_tag=D5F88_00045 NZ_QYTI01000001.1 Protein Homology CDS 6536 8575 . - 0 ID=cds-WP_086163423.1;Parent=gene-D5F88_RS00045;Dbxref=GenBank:WP_086163423.1;Name=WP_086163423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000824614.1;locus_tag=D5F88_RS00045;product=amidase family protein;protein_id=WP_086163423.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 8660 9382 . - . ID=gene-D5F88_RS00050;Name=D5F88_RS00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00050;old_locus_tag=D5F88_00050 NZ_QYTI01000001.1 Protein Homology CDS 8660 9382 . - 0 ID=cds-WP_016481044.1;Parent=gene-D5F88_RS00050;Dbxref=GenBank:WP_016481044.1;Name=WP_016481044.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982,GO:0140098;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA,catalytic activity%2C acting on RNA|0140098||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001234927.1;locus_tag=D5F88_RS00050;product=pseudouridine synthase;protein_id=WP_016481044.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 9533 10677 . + . ID=gene-D5F88_RS00055;Name=D5F88_RS00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00055;old_locus_tag=D5F88_00055 NZ_QYTI01000001.1 Protein Homology CDS 9533 9764 . + 0 ID=cds-WP_124773126.1;Parent=gene-D5F88_RS00055;Dbxref=GenBank:WP_124773126.1;Name=WP_124773126.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS00055;product=IS3 family transposase;protein_id=WP_124773126.1;transl_table=11 NZ_QYTI01000001.1 Protein Homology CDS 9764 10677 . + 2 ID=cds-WP_124773126.1;Parent=gene-D5F88_RS00055;Dbxref=GenBank:WP_124773126.1;Name=WP_124773126.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS00055;product=IS3 family transposase;protein_id=WP_124773126.1;transl_table=11 NZ_QYTI01000001.1 RefSeq pseudogene 10713 11867 . - . ID=gene-D5F88_RS00060;Name=D5F88_RS00060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS00060;old_locus_tag=D5F88_00060;partial=true;pseudo=true;start_range=.,10713 NZ_QYTI01000001.1 Protein Homology CDS 10713 11867 . - 0 ID=cds-D5F88_RS00060;Parent=gene-D5F88_RS00060;Note=The YSIRK form of extended signal peptide directs nascent proteins to the cross-wall site%2C while signal peptides lacking YSIRK direct proteins instead to the cell pole. A large fraction of YSIRK proteins are surface proteins anchored by sortase-mediated processing of a C-terminal LPXTG motif.%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647921.1;locus_tag=D5F88_RS00060;partial=true;product=YSIRK-type signal peptide-containing protein;pseudo=true;start_range=.,10713;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 12178 12351 . - . ID=gene-D5F88_RS00065;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=D5F88_RS00065;old_locus_tag=D5F88_00065 NZ_QYTI01000001.1 Protein Homology CDS 12178 12351 . - 0 ID=cds-WP_000497678.1;Parent=gene-D5F88_RS00065;Dbxref=GenBank:WP_000497678.1;Name=WP_000497678.1;Ontology_term=GO:0009306,GO:0043952,GO:0015450,GO:0005886;gbkey=CDS;gene=secE;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000497677.1;locus_tag=D5F88_RS00065;product=preprotein translocase subunit SecE;protein_id=WP_000497678.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 12387 12539 . - . ID=gene-D5F88_RS00070;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=D5F88_RS00070;old_locus_tag=D5F88_00070 NZ_QYTI01000001.1 Protein Homology CDS 12387 12539 . - 0 ID=cds-WP_000057521.1;Parent=gene-D5F88_RS00070;Dbxref=GenBank:WP_000057521.1;Name=WP_000057521.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmG;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015912025.1;locus_tag=D5F88_RS00070;product=50S ribosomal protein L33;protein_id=WP_000057521.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 12588 14909 . - . ID=gene-D5F88_RS00075;Name=pbp2a;gbkey=Gene;gene=pbp2a;gene_biotype=protein_coding;locus_tag=D5F88_RS00075;old_locus_tag=D5F88_00075 NZ_QYTI01000001.1 Protein Homology CDS 12588 14909 . - 0 ID=cds-WP_000764814.1;Parent=gene-D5F88_RS00075;Dbxref=GenBank:WP_000764814.1;Name=WP_000764814.1;Ontology_term=GO:0008658;gbkey=CDS;gene=pbp2a;go_function=penicillin binding|0008658||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000764805.1;locus_tag=D5F88_RS00075;product=penicillin-binding protein PBP2A;protein_id=WP_000764814.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 14953 15837 . + . ID=gene-D5F88_RS00080;Name=D5F88_RS00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00080;old_locus_tag=D5F88_00080 NZ_QYTI01000001.1 Protein Homology CDS 14953 15837 . + 0 ID=cds-WP_000010477.1;Parent=gene-D5F88_RS00080;Dbxref=GenBank:WP_000010477.1;Name=WP_000010477.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645974.1;locus_tag=D5F88_RS00080;product=RluA family pseudouridine synthase;protein_id=WP_000010477.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 15862 17502 . - . ID=gene-D5F88_RS00085;Name=D5F88_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00085;old_locus_tag=D5F88_00085 NZ_QYTI01000001.1 Protein Homology CDS 15862 17502 . - 0 ID=cds-WP_000459240.1;Parent=gene-D5F88_RS00085;Dbxref=GenBank:WP_000459240.1;Name=WP_000459240.1;Ontology_term=GO:0008270,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000459235.1;locus_tag=D5F88_RS00085;product=zinc ribbon domain-containing protein;protein_id=WP_000459240.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 17672 18883 . - . ID=gene-D5F88_RS00090;Name=D5F88_RS00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00090;old_locus_tag=D5F88_00090 NZ_QYTI01000001.1 Protein Homology CDS 17672 18883 . - 0 ID=cds-WP_124759451.1;Parent=gene-D5F88_RS00090;Dbxref=GenBank:WP_124759451.1;Name=WP_124759451.1;Ontology_term=GO:0009117,GO:0043094,GO:0000287,GO:0008973;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,phosphopentomutase activity|0008973||IEA;go_process=nucleotide metabolic process|0009117||IEA,metabolic compound salvage|0043094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006739798.1;locus_tag=D5F88_RS00090;product=phosphopentomutase;protein_id=WP_124759451.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 18950 19621 . - . ID=gene-D5F88_RS00095;Name=deoC;gbkey=Gene;gene=deoC;gene_biotype=protein_coding;locus_tag=D5F88_RS00095;old_locus_tag=D5F88_00095 NZ_QYTI01000001.1 Protein Homology CDS 18950 19621 . - 0 ID=cds-WP_000453154.1;Parent=gene-D5F88_RS00095;Dbxref=GenBank:WP_000453154.1;Name=WP_000453154.1;Ontology_term=GO:0009264,GO:0004139,GO:0005737;gbkey=CDS;gene=deoC;go_component=cytoplasm|0005737||IEA;go_function=deoxyribose-phosphate aldolase activity|0004139||IEA;go_process=deoxyribonucleotide catabolic process|0009264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000453153.1;locus_tag=D5F88_RS00095;product=deoxyribose-phosphate aldolase;protein_id=WP_000453154.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 19651 20853 . - . ID=gene-D5F88_RS00100;Name=D5F88_RS00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00100;old_locus_tag=D5F88_00100 NZ_QYTI01000001.1 Protein Homology CDS 19651 20853 . - 0 ID=cds-WP_001159688.1;Parent=gene-D5F88_RS00100;Dbxref=GenBank:WP_001159688.1;Name=WP_001159688.1;Ontology_term=GO:1901642,GO:0005337,GO:0015293,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=nucleoside transmembrane transporter activity|0005337||IEA,symporter activity|0015293||IEA;go_process=nucleoside transmembrane transport|1901642||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058832.1;locus_tag=D5F88_RS00100;product=NupC/NupG family nucleoside CNT transporter;protein_id=WP_001159688.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 20874 21653 . - . ID=gene-D5F88_RS00105;Name=udp;gbkey=Gene;gene=udp;gene_biotype=protein_coding;locus_tag=D5F88_RS00105;old_locus_tag=D5F88_00105 NZ_QYTI01000001.1 Protein Homology CDS 20874 21653 . - 0 ID=cds-WP_001182060.1;Parent=gene-D5F88_RS00105;Dbxref=GenBank:WP_001182060.1;Name=WP_001182060.1;Ontology_term=GO:0006139,GO:0004731;gbkey=CDS;gene=udp;go_function=purine-nucleoside phosphorylase activity|0004731||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011184939.1;locus_tag=D5F88_RS00105;product=uridine phosphorylase;protein_id=WP_001182060.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 21812 22549 . + . ID=gene-D5F88_RS00110;Name=D5F88_RS00110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00110;old_locus_tag=D5F88_00110 NZ_QYTI01000001.1 Protein Homology CDS 21812 22549 . + 0 ID=cds-WP_001125582.1;Parent=gene-D5F88_RS00110;Dbxref=GenBank:WP_001125582.1;Name=WP_001125582.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644031.1;locus_tag=D5F88_RS00110;product=GntR family transcriptional regulator;protein_id=WP_001125582.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 22562 22927 . + . ID=gene-D5F88_RS00115;Name=D5F88_RS00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00115;old_locus_tag=D5F88_00115 NZ_QYTI01000001.1 Protein Homology CDS 22562 22927 . + 0 ID=cds-WP_001181224.1;Parent=gene-D5F88_RS00115;Dbxref=GenBank:WP_001181224.1;Name=WP_001181224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001181221.1;locus_tag=D5F88_RS00115;product=hypothetical protein;protein_id=WP_001181224.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 22959 24581 . - . ID=gene-D5F88_RS00120;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=D5F88_RS00120;old_locus_tag=D5F88_00120 NZ_QYTI01000001.1 Protein Homology CDS 22959 24581 . - 0 ID=cds-WP_001029978.1;Parent=gene-D5F88_RS00120;Dbxref=GenBank:WP_001029978.1;Name=WP_001029978.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0042026,GO:0140662;gbkey=CDS;gene=groL;go_function=ATP-dependent protein folding chaperone|0140662||IEA;go_process=protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001029975.1;locus_tag=D5F88_RS00120;product=chaperonin GroEL;protein_id=WP_001029978.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 24677 24961 . - . ID=gene-D5F88_RS00125;Name=groES;gbkey=Gene;gene=groES;gene_biotype=protein_coding;locus_tag=D5F88_RS00125;old_locus_tag=D5F88_00125 NZ_QYTI01000001.1 Protein Homology CDS 24677 24961 . - 0 ID=cds-WP_000917302.1;Parent=gene-D5F88_RS00125;Dbxref=GenBank:WP_000917302.1;Name=WP_000917302.1;gbkey=CDS;gene=groES;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645309.1;locus_tag=D5F88_RS00125;product=co-chaperone GroES;protein_id=WP_000917302.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 25136 25939 . - . ID=gene-D5F88_RS00130;Name=D5F88_RS00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00130;old_locus_tag=D5F88_00130 NZ_QYTI01000001.1 Protein Homology CDS 25136 25939 . - 0 ID=cds-WP_000054435.1;Parent=gene-D5F88_RS00130;Dbxref=GenBank:WP_000054435.1;Name=WP_000054435.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000054433.1;locus_tag=D5F88_RS00130;product=ABC transporter ATP-binding protein;protein_id=WP_000054435.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 25944 26840 . - . ID=gene-D5F88_RS11755;Name=D5F88_RS11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11755 NZ_QYTI01000001.1 Protein Homology CDS 25944 26840 . - 0 ID=cds-WP_000884162.1;Parent=gene-D5F88_RS11755;Dbxref=GenBank:WP_000884162.1;Name=WP_000884162.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000884158.1;locus_tag=D5F88_RS11755;product=ABC transporter permease;protein_id=WP_000884162.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 26856 27818 . - . ID=gene-D5F88_RS11760;Name=D5F88_RS11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11760 NZ_QYTI01000001.1 Protein Homology CDS 26856 27818 . - 0 ID=cds-WP_000724423.1;Parent=gene-D5F88_RS11760;Dbxref=GenBank:WP_000724423.1;Name=WP_000724423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058834.1;locus_tag=D5F88_RS11760;product=ABC transporter substrate-binding protein;protein_id=WP_000724423.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 28283 29080 . - . ID=gene-D5F88_RS00140;Name=D5F88_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00140;old_locus_tag=D5F88_00140 NZ_QYTI01000001.1 Protein Homology CDS 28283 29080 . - 0 ID=cds-WP_016503337.1;Parent=gene-D5F88_RS00140;Dbxref=GenBank:WP_016503337.1;Name=WP_016503337.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000251911.1;locus_tag=D5F88_RS00140;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_016503337.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 29266 30126 . + . ID=gene-D5F88_RS00145;Name=D5F88_RS00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00145;old_locus_tag=D5F88_00145 NZ_QYTI01000001.1 Protein Homology CDS 29266 30126 . + 0 ID=cds-WP_016503338.1;Parent=gene-D5F88_RS00145;Dbxref=GenBank:WP_016503338.1;Name=WP_016503338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767712.1;locus_tag=D5F88_RS00145;product=VOC family protein;protein_id=WP_016503338.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 30169 30900 . + . ID=gene-D5F88_RS00150;Name=yaaA;gbkey=Gene;gene=yaaA;gene_biotype=protein_coding;locus_tag=D5F88_RS00150;old_locus_tag=D5F88_00150 NZ_QYTI01000001.1 Protein Homology CDS 30169 30900 . + 0 ID=cds-WP_086163527.1;Parent=gene-D5F88_RS00150;Dbxref=GenBank:WP_086163527.1;Name=WP_086163527.1;gbkey=CDS;gene=yaaA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632340.1;locus_tag=D5F88_RS00150;product=peroxide stress protein YaaA;protein_id=WP_086163527.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 31257 31874 . - . ID=gene-D5F88_RS00155;Name=nrdG;gbkey=Gene;gene=nrdG;gene_biotype=protein_coding;locus_tag=D5F88_RS00155;old_locus_tag=D5F88_00155 NZ_QYTI01000001.1 Protein Homology CDS 31257 31874 . - 0 ID=cds-WP_001287939.1;Parent=gene-D5F88_RS00155;Dbxref=GenBank:WP_001287939.1;Name=WP_001287939.1;Ontology_term=GO:0043365,GO:0051539;gbkey=CDS;gene=nrdG;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001287938.1;locus_tag=D5F88_RS00155;product=anaerobic ribonucleoside-triphosphate reductase activating protein;protein_id=WP_001287939.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 31947 32438 . - . ID=gene-D5F88_RS00160;Name=D5F88_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00160;old_locus_tag=D5F88_00160 NZ_QYTI01000001.1 Protein Homology CDS 31947 32438 . - 0 ID=cds-WP_000776873.1;Parent=gene-D5F88_RS00160;Dbxref=GenBank:WP_000776873.1;Name=WP_000776873.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000776873.1;locus_tag=D5F88_RS00160;product=GNAT family N-acetyltransferase;protein_id=WP_000776873.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 32447 33379 . - . ID=gene-D5F88_RS00165;Name=D5F88_RS00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00165;old_locus_tag=D5F88_00165 NZ_QYTI01000001.1 Protein Homology CDS 32447 33379 . - 0 ID=cds-WP_016503340.1;Parent=gene-D5F88_RS00165;Dbxref=GenBank:WP_016503340.1;Name=WP_016503340.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644670.1;locus_tag=D5F88_RS00165;product=Gfo/Idh/MocA family protein;protein_id=WP_016503340.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 33392 33535 . - . ID=gene-D5F88_RS00170;Name=D5F88_RS00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00170;old_locus_tag=D5F88_00170 NZ_QYTI01000001.1 Protein Homology CDS 33392 33535 . - 0 ID=cds-WP_000521645.1;Parent=gene-D5F88_RS00170;Dbxref=GenBank:WP_000521645.1;Name=WP_000521645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000521646.1;locus_tag=D5F88_RS00170;product=hypothetical protein;protein_id=WP_000521645.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 33610 35808 . - . ID=gene-D5F88_RS00175;Name=nrdD;gbkey=Gene;gene=nrdD;gene_biotype=protein_coding;locus_tag=D5F88_RS00175;old_locus_tag=D5F88_00175 NZ_QYTI01000001.1 Protein Homology CDS 33610 35808 . - 0 ID=cds-WP_000989502.1;Parent=gene-D5F88_RS00175;Dbxref=GenBank:WP_000989502.1;Name=WP_000989502.1;Ontology_term=GO:0006260,GO:0008998;gbkey=CDS;gene=nrdD;go_function=ribonucleoside-triphosphate reductase (thioredoxin) activity|0008998||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481337.1;locus_tag=D5F88_RS00175;product=anaerobic ribonucleoside-triphosphate reductase;protein_id=WP_000989502.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 35907 37448 . - . ID=gene-D5F88_RS00180;Name=D5F88_RS00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00180;old_locus_tag=D5F88_00180 NZ_QYTI01000001.1 Protein Homology CDS 35907 37448 . - 0 ID=cds-WP_016503341.1;Parent=gene-D5F88_RS00180;Dbxref=GenBank:WP_016503341.1;Name=WP_016503341.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000230047.1;locus_tag=D5F88_RS00180;product=Competence-induced protein Ccs4;protein_id=WP_016503341.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 37494 37616 . - . ID=gene-D5F88_RS11765;Name=D5F88_RS11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11765;old_locus_tag=D5F88_00185 NZ_QYTI01000001.1 Protein Homology CDS 37494 37616 . - 0 ID=cds-WP_001285712.1;Parent=gene-D5F88_RS11765;Dbxref=GenBank:WP_001285712.1;Name=WP_001285712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001285712.1;locus_tag=D5F88_RS11765;product=hypothetical protein;protein_id=WP_001285712.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 37698 38015 . - . ID=gene-D5F88_RS00190;Name=D5F88_RS00190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00190;old_locus_tag=D5F88_00190 NZ_QYTI01000001.1 Protein Homology CDS 37698 38015 . - 0 ID=cds-WP_086163528.1;Parent=gene-D5F88_RS00190;Dbxref=GenBank:WP_086163528.1;Name=WP_086163528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015912065.1;locus_tag=D5F88_RS00190;product=DUF1292 domain-containing protein;protein_id=WP_086163528.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 38041 38460 . - . ID=gene-D5F88_RS00195;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=D5F88_RS00195;old_locus_tag=D5F88_00195 NZ_QYTI01000001.1 Protein Homology CDS 38041 38460 . - 0 ID=cds-WP_001222109.1;Parent=gene-D5F88_RS00195;Dbxref=GenBank:WP_001222109.1;Name=WP_001222109.1;Ontology_term=GO:0006364;gbkey=CDS;gene=ruvX;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003090938.1;locus_tag=D5F88_RS00195;product=Holliday junction resolvase RuvX;protein_id=WP_001222109.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 38460 38726 . - . ID=gene-D5F88_RS00200;Name=D5F88_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00200;old_locus_tag=D5F88_00200 NZ_QYTI01000001.1 Protein Homology CDS 38460 38726 . - 0 ID=cds-WP_000507056.1;Parent=gene-D5F88_RS00200;Dbxref=GenBank:WP_000507056.1;Name=WP_000507056.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006738453.1;locus_tag=D5F88_RS00200;product=IreB family regulatory phosphoprotein;protein_id=WP_000507056.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 38928 39326 . - . ID=gene-D5F88_RS00205;Name=spx;gbkey=Gene;gene=spx;gene_biotype=protein_coding;locus_tag=D5F88_RS00205;old_locus_tag=D5F88_00205 NZ_QYTI01000001.1 Protein Homology CDS 38928 39326 . - 0 ID=cds-WP_000591161.1;Parent=gene-D5F88_RS00205;Dbxref=GenBank:WP_000591161.1;Name=WP_000591161.1;gbkey=CDS;gene=spx;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768833.1;locus_tag=D5F88_RS00205;product=transcriptional regulator Spx;protein_id=WP_000591161.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 39542 40681 . - . ID=gene-D5F88_RS00210;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=D5F88_RS00210;old_locus_tag=D5F88_00210 NZ_QYTI01000001.1 Protein Homology CDS 39542 40681 . - 0 ID=cds-WP_001085741.1;Parent=gene-D5F88_RS00210;Dbxref=GenBank:WP_001085741.1;Name=WP_001085741.1;Ontology_term=GO:0006281,GO:0003677,GO:0003697,GO:0005524,GO:0008094;gbkey=CDS;gene=recA;go_function=DNA binding|0003677||IEA,single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001085741.1;locus_tag=D5F88_RS00210;product=recombinase RecA;protein_id=WP_001085741.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 40755 42014 . - . ID=gene-D5F88_RS00215;Name=D5F88_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00215;old_locus_tag=D5F88_00215 NZ_QYTI01000001.1 Protein Homology CDS 40755 42014 . - 0 ID=cds-WP_016503342.1;Parent=gene-D5F88_RS00215;Dbxref=GenBank:WP_016503342.1;Name=WP_016503342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503342.1;locus_tag=D5F88_RS00215;product=competence/damage-inducible protein A;protein_id=WP_016503342.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 42103 42654 . - . ID=gene-D5F88_RS00220;Name=D5F88_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00220;old_locus_tag=D5F88_00220 NZ_QYTI01000001.1 Protein Homology CDS 42103 42654 . - 0 ID=cds-WP_016503343.1;Parent=gene-D5F88_RS00220;Dbxref=GenBank:WP_016503343.1;Name=WP_016503343.1;Ontology_term=GO:0006284,GO:0008725;gbkey=CDS;go_function=DNA-3-methyladenine glycosylase activity|0008725||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632344.1;locus_tag=D5F88_RS00220;product=DNA-3-methyladenine glycosylase I;protein_id=WP_016503343.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 42677 43267 . - . ID=gene-D5F88_RS00225;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=D5F88_RS00225;old_locus_tag=D5F88_00225 NZ_QYTI01000001.1 Protein Homology CDS 42677 43267 . - 0 ID=cds-WP_000272490.1;Parent=gene-D5F88_RS00225;Dbxref=GenBank:WP_000272490.1;Name=WP_000272490.1;Ontology_term=GO:0006281,GO:0006310,GO:0003678,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=DNA helicase activity|0003678||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768484.1;locus_tag=D5F88_RS00225;product=Holliday junction branch migration protein RuvA;protein_id=WP_000272490.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 43269 44501 . - . ID=gene-D5F88_RS00230;Name=D5F88_RS00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00230;old_locus_tag=D5F88_00230 NZ_QYTI01000001.1 Protein Homology CDS 43269 44501 . - 0 ID=cds-WP_000657472.1;Parent=gene-D5F88_RS00230;Dbxref=GenBank:WP_000657472.1;Name=WP_000657472.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000657477.1;locus_tag=D5F88_RS00230;product=MDR family MFS transporter;protein_id=WP_000657472.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 44533 46506 . - . ID=gene-D5F88_RS00235;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=D5F88_RS00235;old_locus_tag=D5F88_00235 NZ_QYTI01000001.1 Protein Homology CDS 44533 46506 . - 0 ID=cds-WP_180383579.1;Parent=gene-D5F88_RS00235;Dbxref=GenBank:WP_180383579.1;Name=WP_180383579.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002262396.1;locus_tag=D5F88_RS00235;product=DNA mismatch repair endonuclease MutL;protein_id=WP_180383579.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 46732 46935 . + . ID=gene-D5F88_RS00245;Name=D5F88_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00245;old_locus_tag=D5F88_00245 NZ_QYTI01000001.1 Protein Homology CDS 46732 46935 . + 0 ID=cds-WP_000191849.1;Parent=gene-D5F88_RS00245;Dbxref=GenBank:WP_000191849.1;Name=WP_000191849.1;Ontology_term=GO:0003676;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000191849.1;locus_tag=D5F88_RS00245;product=cold-shock protein;protein_id=WP_000191849.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 46992 49568 . - . ID=gene-D5F88_RS00250;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=D5F88_RS00250;old_locus_tag=D5F88_00250 NZ_QYTI01000001.1 Protein Homology CDS 46992 49568 . - 0 ID=cds-WP_016503345.1;Parent=gene-D5F88_RS00250;Dbxref=GenBank:WP_016503345.1;Name=WP_016503345.1;Ontology_term=GO:0006298,GO:0005524,GO:0030983;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649199.1;locus_tag=D5F88_RS00250;product=DNA mismatch repair protein MutS;protein_id=WP_016503345.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 49625 50062 . - . ID=gene-D5F88_RS00255;Name=argR;gbkey=Gene;gene=argR;gene_biotype=protein_coding;locus_tag=D5F88_RS00255;old_locus_tag=D5F88_00255 NZ_QYTI01000001.1 Protein Homology CDS 49625 50062 . - 0 ID=cds-WP_001033152.1;Parent=gene-D5F88_RS00255;Dbxref=GenBank:WP_001033152.1;Name=WP_001033152.1;Ontology_term=GO:0006355,GO:0006525,GO:0003700;gbkey=CDS;gene=argR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,arginine metabolic process|0006525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058838.1;locus_tag=D5F88_RS00255;product=arginine repressor;protein_id=WP_001033152.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 50284 51975 . + . ID=gene-D5F88_RS00260;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=D5F88_RS00260;old_locus_tag=D5F88_00260 NZ_QYTI01000001.1 Protein Homology CDS 50284 51975 . + 0 ID=cds-WP_086163530.1;Parent=gene-D5F88_RS00260;Dbxref=GenBank:WP_086163530.1;Name=WP_086163530.1;Ontology_term=GO:0006420,GO:0004814,GO:0005524,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA,ATP binding|0005524||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632348.1;locus_tag=D5F88_RS00260;product=arginine--tRNA ligase;protein_id=WP_086163530.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 52063 52371 . + . ID=gene-D5F88_RS00265;Name=D5F88_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00265;old_locus_tag=D5F88_00265 NZ_QYTI01000001.1 Protein Homology CDS 52063 52371 . + 0 ID=cds-WP_001138859.1;Parent=gene-D5F88_RS00265;Dbxref=GenBank:WP_001138859.1;Name=WP_001138859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011889238.1;locus_tag=D5F88_RS00265;product=bacteriocin immunity protein;protein_id=WP_001138859.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 52398 53270 . - . ID=gene-D5F88_RS00270;Name=D5F88_RS00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00270;old_locus_tag=D5F88_00270 NZ_QYTI01000001.1 Protein Homology CDS 52398 53270 . - 0 ID=cds-WP_000915478.1;Parent=gene-D5F88_RS00270;Dbxref=GenBank:WP_000915478.1;Name=WP_000915478.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481344.1;locus_tag=D5F88_RS00270;product=YitT family protein;protein_id=WP_000915478.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 53378 54322 . - . ID=gene-D5F88_RS00275;Name=D5F88_RS00275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00275;old_locus_tag=D5F88_00275 NZ_QYTI01000001.1 Protein Homology CDS 53378 54322 . - 0 ID=cds-WP_000857770.1;Parent=gene-D5F88_RS00275;Dbxref=GenBank:WP_000857770.1;Name=WP_000857770.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646408.1;locus_tag=D5F88_RS00275;product=YitT family protein;protein_id=WP_000857770.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 54312 56063 . - . ID=gene-D5F88_RS00280;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=D5F88_RS00280;old_locus_tag=D5F88_00280 NZ_QYTI01000001.1 Protein Homology CDS 54312 56063 . - 0 ID=cds-WP_000830938.1;Parent=gene-D5F88_RS00280;Dbxref=GenBank:WP_000830938.1;Name=WP_000830938.1;Ontology_term=GO:0006418,GO:0000166,GO:0004812,GO:0005524,GO:0016874;gbkey=CDS;gene=aspS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000830932.1;locus_tag=D5F88_RS00280;product=aspartate--tRNA ligase;protein_id=WP_000830938.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 56156 57436 . - . ID=gene-D5F88_RS00285;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=D5F88_RS00285;old_locus_tag=D5F88_00285 NZ_QYTI01000001.1 Protein Homology CDS 56156 57436 . - 0 ID=cds-WP_000775906.1;Parent=gene-D5F88_RS00285;Dbxref=GenBank:WP_000775906.1;Name=WP_000775906.1;Ontology_term=GO:0006427,GO:0004821,GO:0005524,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA,ATP binding|0005524||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000775906.1;locus_tag=D5F88_RS00285;product=histidine--tRNA ligase;protein_id=WP_000775906.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 57656 57838 . + . ID=gene-D5F88_RS00290;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=D5F88_RS00290;old_locus_tag=D5F88_00290 NZ_QYTI01000001.1 Protein Homology CDS 57656 57838 . + 0 ID=cds-WP_000290414.1;Parent=gene-D5F88_RS00290;Dbxref=GenBank:WP_000290414.1;Name=WP_000290414.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmF;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018380522.1;locus_tag=D5F88_RS00290;product=50S ribosomal protein L32;protein_id=WP_000290414.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 57854 58003 . + . ID=gene-D5F88_RS00295;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=D5F88_RS00295;old_locus_tag=D5F88_00295 NZ_QYTI01000001.1 Protein Homology CDS 57854 58003 . + 0 ID=cds-WP_001265622.1;Parent=gene-D5F88_RS00295;Dbxref=GenBank:WP_001265622.1;Name=WP_001265622.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmG;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001265622.1;locus_tag=D5F88_RS00295;product=50S ribosomal protein L33;protein_id=WP_001265622.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 58250 58921 . + . ID=gene-D5F88_RS00300;Name=D5F88_RS00300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00300;old_locus_tag=D5F88_00300 NZ_QYTI01000001.1 Protein Homology CDS 58250 58921 . + 0 ID=cds-WP_124759452.1;Parent=gene-D5F88_RS00300;Dbxref=GenBank:WP_124759452.1;Name=WP_124759452.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000186297.1;locus_tag=D5F88_RS00300;product=PepSY domain-containing protein;protein_id=WP_124759452.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 59006 59677 . + . ID=gene-D5F88_RS00305;Name=D5F88_RS00305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00305;old_locus_tag=D5F88_00305 NZ_QYTI01000001.1 Protein Homology CDS 59006 59677 . + 0 ID=cds-WP_124773128.1;Parent=gene-D5F88_RS00305;Dbxref=GenBank:WP_124773128.1;Name=WP_124773128.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643515.1;locus_tag=D5F88_RS00305;product=response regulator transcription factor;protein_id=WP_124773128.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 59661 61025 . + . ID=gene-D5F88_RS00310;Name=D5F88_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00310;old_locus_tag=D5F88_00310 NZ_QYTI01000001.1 Protein Homology CDS 59661 61025 . + 0 ID=cds-WP_000898849.1;Parent=gene-D5F88_RS00310;Dbxref=GenBank:WP_000898849.1;Name=WP_000898849.1;Ontology_term=GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000898851.1;locus_tag=D5F88_RS00310;product=sensor histidine kinase;protein_id=WP_000898849.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 61133 62686 . - . ID=gene-D5F88_RS00315;Name=D5F88_RS00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00315;old_locus_tag=D5F88_00315 NZ_QYTI01000001.1 Protein Homology CDS 61133 62686 . - 0 ID=cds-WP_016503348.1;Parent=gene-D5F88_RS00315;Dbxref=GenBank:WP_016503348.1;Name=WP_016503348.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001114291.1;locus_tag=D5F88_RS00315;product=YfcC family protein;protein_id=WP_016503348.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 62780 63706 . - . ID=gene-D5F88_RS00320;Name=arcC;gbkey=Gene;gene=arcC;gene_biotype=protein_coding;locus_tag=D5F88_RS00320;old_locus_tag=D5F88_00320 NZ_QYTI01000001.1 Protein Homology CDS 62780 63706 . - 0 ID=cds-WP_016503349.1;Parent=gene-D5F88_RS00320;Dbxref=GenBank:WP_016503349.1;Name=WP_016503349.1;Ontology_term=GO:0006520,GO:0008804;gbkey=CDS;gene=arcC;go_function=carbamate kinase activity|0008804||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503349.1;locus_tag=D5F88_RS00320;product=carbamate kinase;protein_id=WP_016503349.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 63718 64716 . - . ID=gene-D5F88_RS00325;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=D5F88_RS00325;old_locus_tag=D5F88_00325 NZ_QYTI01000001.1 Protein Homology CDS 63718 64716 . - 0 ID=cds-WP_000793624.1;Parent=gene-D5F88_RS00325;Dbxref=GenBank:WP_000793624.1;Name=WP_000793624.1;Ontology_term=GO:0042450,GO:0004585;gbkey=CDS;gene=argF;go_function=ornithine carbamoyltransferase activity|0004585||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003045350.1;locus_tag=D5F88_RS00325;product=ornithine carbamoyltransferase;protein_id=WP_000793624.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 64819 66114 . + . ID=gene-D5F88_RS00330;Name=D5F88_RS00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00330;old_locus_tag=D5F88_00330 NZ_QYTI01000001.1 Protein Homology CDS 64819 66114 . + 0 ID=cds-WP_000884296.1;Parent=gene-D5F88_RS00330;Dbxref=GenBank:WP_000884296.1;Name=WP_000884296.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000884289.1;locus_tag=D5F88_RS00330;product=ATP-binding protein;protein_id=WP_000884296.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 66111 66944 . + . ID=gene-D5F88_RS00335;Name=D5F88_RS00335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00335;old_locus_tag=D5F88_00335 NZ_QYTI01000001.1 Protein Homology CDS 66111 66944 . + 0 ID=cds-WP_000675242.1;Parent=gene-D5F88_RS00335;Dbxref=GenBank:WP_000675242.1;Name=WP_000675242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000675243.1;locus_tag=D5F88_RS00335;product=DNA-binding domain-containing protein;protein_id=WP_000675242.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 67166 67888 . + . ID=gene-D5F88_RS00340;Name=D5F88_RS00340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00340;old_locus_tag=D5F88_00340 NZ_QYTI01000001.1 Protein Homology CDS 67166 67888 . + 0 ID=cds-WP_000622721.1;Parent=gene-D5F88_RS00340;Dbxref=GenBank:WP_000622721.1;Name=WP_000622721.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767600.1;locus_tag=D5F88_RS00340;product=ABC transporter ATP-binding protein;protein_id=WP_000622721.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 67891 69405 . + . ID=gene-D5F88_RS00345;Name=D5F88_RS00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00345;old_locus_tag=D5F88_00345 NZ_QYTI01000001.1 Protein Homology CDS 67891 69405 . + 0 ID=cds-WP_016503350.1;Parent=gene-D5F88_RS00345;Dbxref=GenBank:WP_016503350.1;Name=WP_016503350.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020,GO:0043190,GO:0055052;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019319700.1;locus_tag=D5F88_RS00345;product=ABC transporter permease/substrate-binding protein;protein_id=WP_016503350.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 69484 72024 . - . ID=gene-D5F88_RS00350;Name=mprF;gbkey=Gene;gene=mprF;gene_biotype=protein_coding;locus_tag=D5F88_RS00350;old_locus_tag=D5F88_00350 NZ_QYTI01000001.1 Protein Homology CDS 69484 72024 . - 0 ID=cds-WP_180383442.1;Parent=gene-D5F88_RS00350;Dbxref=GenBank:WP_180383442.1;Name=WP_180383442.1;gbkey=CDS;gene=mprF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000733247.1;locus_tag=D5F88_RS00350;product=bifunctional lysylphosphatidylglycerol flippase/synthetase MprF;protein_id=WP_180383442.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 72008 72751 . - . ID=gene-D5F88_RS00355;Name=D5F88_RS00355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00355;old_locus_tag=D5F88_00355 NZ_QYTI01000001.1 Protein Homology CDS 72008 72751 . - 0 ID=cds-WP_086163532.1;Parent=gene-D5F88_RS00355;Dbxref=GenBank:WP_086163532.1;Name=WP_086163532.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000138569.1;locus_tag=D5F88_RS00355;product=alpha/beta fold hydrolase;protein_id=WP_086163532.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 72885 73241 . - . ID=gene-D5F88_RS00360;Name=D5F88_RS00360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00360;old_locus_tag=D5F88_00360 NZ_QYTI01000001.1 Protein Homology CDS 72885 73241 . - 0 ID=cds-WP_000105931.1;Parent=gene-D5F88_RS00360;Dbxref=GenBank:WP_000105931.1;Name=WP_000105931.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000105940.1;locus_tag=D5F88_RS00360;product=DUF1304 domain-containing protein;protein_id=WP_000105931.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 73308 75626 . - . ID=gene-D5F88_RS00365;Name=D5F88_RS00365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00365;old_locus_tag=D5F88_00365 NZ_QYTI01000001.1 Protein Homology CDS 73308 75626 . - 0 ID=cds-WP_016503353.1;Parent=gene-D5F88_RS00365;Dbxref=GenBank:WP_016503353.1;Name=WP_016503353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000883428.1;locus_tag=D5F88_RS00365;product=YhgE/Pip domain-containing protein;protein_id=WP_016503353.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 75765 76304 . + . ID=gene-D5F88_RS00370;Name=D5F88_RS00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00370;old_locus_tag=D5F88_00370 NZ_QYTI01000001.1 Protein Homology CDS 75765 76304 . + 0 ID=cds-WP_000245863.1;Parent=gene-D5F88_RS00370;Dbxref=GenBank:WP_000245863.1;Name=WP_000245863.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771890.1;locus_tag=D5F88_RS00370;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000245863.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 76390 76686 . - . ID=gene-D5F88_RS00375;Name=D5F88_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00375;old_locus_tag=D5F88_00375 NZ_QYTI01000001.1 Protein Homology CDS 76390 76686 . - 0 ID=cds-WP_016481360.1;Parent=gene-D5F88_RS00375;Dbxref=GenBank:WP_016481360.1;Name=WP_016481360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001052252.1;locus_tag=D5F88_RS00375;product=DUF4298 domain-containing protein;protein_id=WP_016481360.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 77395 77694 . - . ID=gene-D5F88_RS00380;Name=D5F88_RS00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00380;old_locus_tag=D5F88_00380 NZ_QYTI01000001.1 GeneMarkS-2+ CDS 77395 77694 . - 0 ID=cds-WP_260424962.1;Parent=gene-D5F88_RS00380;Dbxref=GenBank:WP_260424962.1;Name=WP_260424962.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS00380;product=hypothetical protein;protein_id=WP_260424962.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 78013 78315 . - . ID=gene-D5F88_RS00385;Name=D5F88_RS00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00385;old_locus_tag=D5F88_00385 NZ_QYTI01000001.1 GeneMarkS-2+ CDS 78013 78315 . - 0 ID=cds-WP_124773130.1;Parent=gene-D5F88_RS00385;Dbxref=GenBank:WP_124773130.1;Name=WP_124773130.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS00385;product=hypothetical protein;protein_id=WP_124773130.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 78317 78694 . - . ID=gene-D5F88_RS00390;Name=D5F88_RS00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00390;old_locus_tag=D5F88_00390 NZ_QYTI01000001.1 Protein Homology CDS 78317 78694 . - 0 ID=cds-WP_260424963.1;Parent=gene-D5F88_RS00390;Dbxref=GenBank:WP_260424963.1;Name=WP_260424963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644049.1;locus_tag=D5F88_RS00390;product=hypothetical protein;protein_id=WP_260424963.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 78721 79041 . - . ID=gene-D5F88_RS00395;Name=D5F88_RS00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00395;old_locus_tag=D5F88_00395 NZ_QYTI01000001.1 GeneMarkS-2+ CDS 78721 79041 . - 0 ID=cds-WP_124773134.1;Parent=gene-D5F88_RS00395;Dbxref=GenBank:WP_124773134.1;Name=WP_124773134.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS00395;product=hypothetical protein;protein_id=WP_124773134.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 79359 80705 . - . ID=gene-D5F88_RS00400;Name=D5F88_RS00400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00400;old_locus_tag=D5F88_00400 NZ_QYTI01000001.1 Protein Homology CDS 79359 80705 . - 0 ID=cds-WP_260424964.1;Parent=gene-D5F88_RS00400;Dbxref=GenBank:WP_260424964.1;Name=WP_260424964.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009853741.1;locus_tag=D5F88_RS00400;product=VapE domain-containing protein;protein_id=WP_260424964.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 80765 81601 . - . ID=gene-D5F88_RS00405;Name=D5F88_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00405;old_locus_tag=D5F88_00405 NZ_QYTI01000001.1 Protein Homology CDS 80765 81601 . - 0 ID=cds-WP_086163539.1;Parent=gene-D5F88_RS00405;Dbxref=GenBank:WP_086163539.1;Name=WP_086163539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644046.1;locus_tag=D5F88_RS00405;product=primase alpha helix C-terminal domain-containing protein;protein_id=WP_086163539.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 81598 81870 . - . ID=gene-D5F88_RS00410;Name=D5F88_RS00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00410;old_locus_tag=D5F88_00410 NZ_QYTI01000001.1 Protein Homology CDS 81598 81870 . - 0 ID=cds-WP_086163540.1;Parent=gene-D5F88_RS00410;Dbxref=GenBank:WP_086163540.1;Name=WP_086163540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644045.1;locus_tag=D5F88_RS00410;product=hypothetical protein;protein_id=WP_086163540.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 81854 82183 . - . ID=gene-D5F88_RS00415;Name=D5F88_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00415;old_locus_tag=D5F88_00415 NZ_QYTI01000001.1 GeneMarkS-2+ CDS 81854 82183 . - 0 ID=cds-WP_086163541.1;Parent=gene-D5F88_RS00415;Dbxref=GenBank:WP_086163541.1;Name=WP_086163541.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS00415;product=hypothetical protein;protein_id=WP_086163541.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 82184 82435 . - . ID=gene-D5F88_RS00420;Name=D5F88_RS00420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00420;old_locus_tag=D5F88_00420 NZ_QYTI01000001.1 Protein Homology CDS 82184 82435 . - 0 ID=cds-WP_086163542.1;Parent=gene-D5F88_RS00420;Dbxref=GenBank:WP_086163542.1;Name=WP_086163542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481378.1;locus_tag=D5F88_RS00420;product=hypothetical protein;protein_id=WP_086163542.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 82452 82646 . - . ID=gene-D5F88_RS00425;Name=D5F88_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00425;old_locus_tag=D5F88_00425 NZ_QYTI01000001.1 Protein Homology CDS 82452 82646 . - 0 ID=cds-WP_086163543.1;Parent=gene-D5F88_RS00425;Dbxref=GenBank:WP_086163543.1;Name=WP_086163543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481379.1;locus_tag=D5F88_RS00425;product=hypothetical protein;protein_id=WP_086163543.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 82643 83131 . - . ID=gene-D5F88_RS00430;Name=D5F88_RS00430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00430;old_locus_tag=D5F88_00430 NZ_QYTI01000001.1 Protein Homology CDS 82643 83131 . - 0 ID=cds-WP_086163544.1;Parent=gene-D5F88_RS00430;Dbxref=GenBank:WP_086163544.1;Name=WP_086163544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481380.1;locus_tag=D5F88_RS00430;product=hypothetical protein;protein_id=WP_086163544.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 83136 83285 . - . ID=gene-D5F88_RS11620;Name=D5F88_RS11620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11620 NZ_QYTI01000001.1 Protein Homology CDS 83136 83285 . - 0 ID=cds-WP_017644041.1;Parent=gene-D5F88_RS11620;Dbxref=GenBank:WP_017644041.1;Name=WP_017644041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644041.1;locus_tag=D5F88_RS11620;product=hypothetical protein;protein_id=WP_017644041.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 83583 84203 . - . ID=gene-D5F88_RS00435;Name=D5F88_RS00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00435;old_locus_tag=D5F88_00435 NZ_QYTI01000001.1 Protein Homology CDS 83583 84203 . - 0 ID=cds-WP_124773136.1;Parent=gene-D5F88_RS00435;Dbxref=GenBank:WP_124773136.1;Name=WP_124773136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644040.1;locus_tag=D5F88_RS00435;product=Rha family transcriptional regulator;protein_id=WP_124773136.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 84214 84417 . - . ID=gene-D5F88_RS00440;Name=D5F88_RS00440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00440;old_locus_tag=D5F88_00440 NZ_QYTI01000001.1 Protein Homology CDS 84214 84417 . - 0 ID=cds-WP_086163549.1;Parent=gene-D5F88_RS00440;Dbxref=GenBank:WP_086163549.1;Name=WP_086163549.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000359663.1;locus_tag=D5F88_RS00440;product=helix-turn-helix transcriptional regulator;protein_id=WP_086163549.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 84629 85219 . + . ID=gene-D5F88_RS00445;Name=D5F88_RS00445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00445;old_locus_tag=D5F88_00445 NZ_QYTI01000001.1 Protein Homology CDS 84629 85219 . + 0 ID=cds-WP_086163550.1;Parent=gene-D5F88_RS00445;Dbxref=GenBank:WP_086163550.1;Name=WP_086163550.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001080836.1;locus_tag=D5F88_RS00445;product=helix-turn-helix domain-containing protein;protein_id=WP_086163550.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 85806 85991 . + . ID=gene-D5F88_RS00450;Name=D5F88_RS00450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00450;old_locus_tag=D5F88_00450 NZ_QYTI01000001.1 Protein Homology CDS 85806 85991 . + 0 ID=cds-WP_124773138.1;Parent=gene-D5F88_RS00450;Dbxref=GenBank:WP_124773138.1;Name=WP_124773138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000566299.1;locus_tag=D5F88_RS00450;product=competence regulator inhibitor paratox;protein_id=WP_124773138.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 86187 87353 . + . ID=gene-D5F88_RS00455;Name=D5F88_RS00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00455;old_locus_tag=D5F88_00455 NZ_QYTI01000001.1 Protein Homology CDS 86187 87353 . + 0 ID=cds-WP_124773140.1;Parent=gene-D5F88_RS00455;Dbxref=GenBank:WP_124773140.1;Name=WP_124773140.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000704663.1;locus_tag=D5F88_RS00455;product=tyrosine-type recombinase/integrase;protein_id=WP_124773140.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 87446 88057 . - . ID=gene-D5F88_RS00460;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=D5F88_RS00460;old_locus_tag=D5F88_00460 NZ_QYTI01000001.1 Protein Homology CDS 87446 88057 . - 0 ID=cds-WP_000092759.1;Parent=gene-D5F88_RS00460;Dbxref=GenBank:WP_000092759.1;Name=WP_000092759.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014407971.1;locus_tag=D5F88_RS00460;product=30S ribosomal protein S4;protein_id=WP_000092759.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 88387 88674 . - . ID=gene-D5F88_RS00465;Name=D5F88_RS00465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00465;old_locus_tag=D5F88_00465 NZ_QYTI01000001.1 Protein Homology CDS 88387 88674 . - 0 ID=cds-WP_001278152.1;Parent=gene-D5F88_RS00465;Dbxref=GenBank:WP_001278152.1;Name=WP_001278152.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001278154.1;locus_tag=D5F88_RS00465;product=Veg family protein;protein_id=WP_001278152.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 88686 90041 . - . ID=gene-D5F88_RS00470;Name=dnaB;gbkey=Gene;gene=dnaB;gene_biotype=protein_coding;locus_tag=D5F88_RS00470;old_locus_tag=D5F88_00470 NZ_QYTI01000001.1 Protein Homology CDS 88686 90041 . - 0 ID=cds-WP_000852645.1;Parent=gene-D5F88_RS00470;Dbxref=GenBank:WP_000852645.1;Name=WP_000852645.1;Ontology_term=GO:0006260,GO:0003677,GO:0003678,GO:0005524;gbkey=CDS;gene=dnaB;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000852642.1;locus_tag=D5F88_RS00470;product=replicative DNA helicase;protein_id=WP_000852645.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 90084 90536 . - . ID=gene-D5F88_RS00475;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=D5F88_RS00475;old_locus_tag=D5F88_00475 NZ_QYTI01000001.1 Protein Homology CDS 90084 90536 . - 0 ID=cds-WP_000864243.1;Parent=gene-D5F88_RS00475;Dbxref=GenBank:WP_000864243.1;Name=WP_000864243.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000864242.1;locus_tag=D5F88_RS00475;product=50S ribosomal protein L9;protein_id=WP_000864243.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 90542 92524 . - . ID=gene-D5F88_RS00480;Name=D5F88_RS00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00480;old_locus_tag=D5F88_00480 NZ_QYTI01000001.1 Protein Homology CDS 90542 92524 . - 0 ID=cds-WP_000819774.1;Parent=gene-D5F88_RS00480;Dbxref=GenBank:WP_000819774.1;Name=WP_000819774.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000819774.1;locus_tag=D5F88_RS00480;product=DHH family phosphoesterase;protein_id=WP_000819774.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 92591 94492 . - . ID=gene-D5F88_RS00485;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=D5F88_RS00485;old_locus_tag=D5F88_00485 NZ_QYTI01000001.1 Protein Homology CDS 92591 94492 . - 0 ID=cds-WP_124773142.1;Parent=gene-D5F88_RS00485;Dbxref=GenBank:WP_124773142.1;Name=WP_124773142.1;Ontology_term=GO:0002098,GO:0008033;gbkey=CDS;gene=mnmG;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481387.1;locus_tag=D5F88_RS00485;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=WP_124773142.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 94662 95273 . - . ID=gene-D5F88_RS00490;Name=D5F88_RS00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00490;old_locus_tag=D5F88_00490 NZ_QYTI01000001.1 Protein Homology CDS 94662 95273 . - 0 ID=cds-WP_086163555.1;Parent=gene-D5F88_RS00490;Dbxref=GenBank:WP_086163555.1;Name=WP_086163555.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000623753.1;locus_tag=D5F88_RS00490;product=MarC family protein;protein_id=WP_086163555.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 95305 96426 . - . ID=gene-D5F88_RS00495;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=D5F88_RS00495;old_locus_tag=D5F88_00495 NZ_QYTI01000001.1 Protein Homology CDS 95305 96426 . - 0 ID=cds-WP_000131749.1;Parent=gene-D5F88_RS00495;Dbxref=GenBank:WP_000131749.1;Name=WP_000131749.1;Ontology_term=GO:0008033,GO:0016740,GO:0016783;gbkey=CDS;gene=mnmA;go_function=transferase activity|0016740||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008535986.1;locus_tag=D5F88_RS00495;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_000131749.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 96673 97341 . + . ID=gene-D5F88_RS00500;Name=sdaAB;gbkey=Gene;gene=sdaAB;gene_biotype=protein_coding;locus_tag=D5F88_RS00500;old_locus_tag=D5F88_00500 NZ_QYTI01000001.1 Protein Homology CDS 96673 97341 . + 0 ID=cds-WP_000681579.1;Parent=gene-D5F88_RS00500;Dbxref=GenBank:WP_000681579.1;Name=WP_000681579.1;Ontology_term=GO:0006094,GO:0006565,GO:0003941;gbkey=CDS;gene=sdaAB;go_function=L-serine ammonia-lyase activity|0003941||IEA;go_process=gluconeogenesis|0006094||IEA,L-serine catabolic process|0006565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000681580.1;locus_tag=D5F88_RS00500;product=L-serine ammonia-lyase%2C iron-sulfur-dependent subunit beta;protein_id=WP_000681579.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 97356 98228 . + . ID=gene-D5F88_RS00505;Name=sdaAA;gbkey=Gene;gene=sdaAA;gene_biotype=protein_coding;locus_tag=D5F88_RS00505;old_locus_tag=D5F88_00505 NZ_QYTI01000001.1 Protein Homology CDS 97356 98228 . + 0 ID=cds-WP_086163556.1;Parent=gene-D5F88_RS00505;Dbxref=GenBank:WP_086163556.1;Name=WP_086163556.1;Ontology_term=GO:0006094,GO:0006565,GO:0003941;gbkey=CDS;gene=sdaAA;go_function=L-serine ammonia-lyase activity|0003941||IEA;go_process=gluconeogenesis|0006094||IEA,L-serine catabolic process|0006565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000500148.1;locus_tag=D5F88_RS00505;product=L-serine ammonia-lyase%2C iron-sulfur-dependent%2C subunit alpha;protein_id=WP_086163556.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 98363 99067 . - . ID=gene-D5F88_RS00510;Name=D5F88_RS00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00510;old_locus_tag=D5F88_00510 NZ_QYTI01000001.1 Protein Homology CDS 98363 99067 . - 0 ID=cds-WP_001042660.1;Parent=gene-D5F88_RS00510;Dbxref=GenBank:WP_001042660.1;Name=WP_001042660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001042662.1;locus_tag=D5F88_RS00510;product=transglycosylase SLT domain-containing protein;protein_id=WP_001042660.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 99173 99712 . - . ID=gene-D5F88_RS00515;Name=apf;gbkey=Gene;gene=apf;gene_biotype=protein_coding;locus_tag=D5F88_RS00515;old_locus_tag=D5F88_00515 NZ_QYTI01000001.1 Protein Homology CDS 99173 99712 . - 0 ID=cds-WP_000029067.1;Parent=gene-D5F88_RS00515;Dbxref=GenBank:WP_000029067.1;Name=WP_000029067.1;gbkey=CDS;gene=apf;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000029072.1;locus_tag=D5F88_RS00515;product=aggregation-promoting factor;protein_id=WP_000029067.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 99928 100722 . - . ID=gene-D5F88_RS00520;Name=D5F88_RS00520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00520;old_locus_tag=D5F88_00520 NZ_QYTI01000001.1 Protein Homology CDS 99928 100722 . - 0 ID=cds-WP_000359358.1;Parent=gene-D5F88_RS00520;Dbxref=GenBank:WP_000359358.1;Name=WP_000359358.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000359357.1;locus_tag=D5F88_RS00520;product=energy-coupling factor transporter transmembrane component T family protein;protein_id=WP_000359358.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 100715 101557 . - . ID=gene-D5F88_RS00525;Name=D5F88_RS00525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00525;old_locus_tag=D5F88_00525 NZ_QYTI01000001.1 Protein Homology CDS 100715 101557 . - 0 ID=cds-WP_000510606.1;Parent=gene-D5F88_RS00525;Dbxref=GenBank:WP_000510606.1;Name=WP_000510606.1;Ontology_term=GO:0006810,GO:0005524,GO:0042626,GO:0009898;gbkey=CDS;go_component=cytoplasmic side of plasma membrane|0009898||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000510607.1;locus_tag=D5F88_RS00525;product=energy-coupling factor transporter ATPase;protein_id=WP_000510606.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 101533 102372 . - . ID=gene-D5F88_RS00530;Name=D5F88_RS00530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00530;old_locus_tag=D5F88_00530 NZ_QYTI01000001.1 Protein Homology CDS 101533 102372 . - 0 ID=cds-WP_000181757.1;Parent=gene-D5F88_RS00530;Dbxref=GenBank:WP_000181757.1;Name=WP_000181757.1;Ontology_term=GO:0055085,GO:0005524,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000181759.1;locus_tag=D5F88_RS00530;product=energy-coupling factor ABC transporter ATP-binding protein;protein_id=WP_000181757.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 102372 102914 . - . ID=gene-D5F88_RS00535;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=D5F88_RS00535;old_locus_tag=D5F88_00535 NZ_QYTI01000001.1 Protein Homology CDS 102372 102914 . - 0 ID=cds-WP_000239224.1;Parent=gene-D5F88_RS00535;Dbxref=GenBank:WP_000239224.1;Name=WP_000239224.1;Ontology_term=GO:0008654,GO:0008444,GO:0016020;gbkey=CDS;gene=pgsA;go_component=membrane|0016020||IEA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003090075.1;locus_tag=D5F88_RS00535;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_000239224.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 103037 104320 . - . ID=gene-D5F88_RS00540;Name=yfmH;gbkey=Gene;gene=yfmH;gene_biotype=protein_coding;locus_tag=D5F88_RS00540;old_locus_tag=D5F88_00540 NZ_QYTI01000001.1 Protein Homology CDS 103037 104320 . - 0 ID=cds-WP_000217765.1;Parent=gene-D5F88_RS00540;Dbxref=GenBank:WP_000217765.1;Name=WP_000217765.1;gbkey=CDS;gene=yfmH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000217763.1;locus_tag=D5F88_RS00540;product=EF-P 5-aminopentanol modification-associated protein YfmH;protein_id=WP_000217765.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 104322 105566 . - . ID=gene-D5F88_RS00545;Name=yfmF;gbkey=Gene;gene=yfmF;gene_biotype=protein_coding;locus_tag=D5F88_RS00545;old_locus_tag=D5F88_00545 NZ_QYTI01000001.1 Protein Homology CDS 104322 105566 . - 0 ID=cds-WP_000706188.1;Parent=gene-D5F88_RS00545;Dbxref=GenBank:WP_000706188.1;Name=WP_000706188.1;gbkey=CDS;gene=yfmF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000706188.1;locus_tag=D5F88_RS00545;product=EF-P 5-aminopentanol modification-associated protein YfmF;protein_id=WP_000706188.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 105805 106158 . + . ID=gene-D5F88_RS00550;Name=yaaA;gbkey=Gene;gene=yaaA;gene_biotype=protein_coding;locus_tag=D5F88_RS00550;old_locus_tag=D5F88_00550 NZ_QYTI01000001.1 Protein Homology CDS 105805 106158 . + 0 ID=cds-WP_000384867.1;Parent=gene-D5F88_RS00550;Dbxref=GenBank:WP_000384867.1;Name=WP_000384867.1;Ontology_term=GO:0003723;gbkey=CDS;gene=yaaA;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000384871.1;locus_tag=D5F88_RS00550;product=S4 domain-containing protein YaaA;protein_id=WP_000384867.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 106161 107270 . + . ID=gene-D5F88_RS00555;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=D5F88_RS00555;old_locus_tag=D5F88_00555 NZ_QYTI01000001.1 Protein Homology CDS 106161 107270 . + 0 ID=cds-WP_124773144.1;Parent=gene-D5F88_RS00555;Dbxref=GenBank:WP_124773144.1;Name=WP_124773144.1;Note=All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair.;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0009432,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632366.1;locus_tag=D5F88_RS00555;product=DNA replication/repair protein RecF;protein_id=WP_124773144.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 107282 108148 . - . ID=gene-D5F88_RS00560;Name=D5F88_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00560;old_locus_tag=D5F88_00560 NZ_QYTI01000001.1 Protein Homology CDS 107282 108148 . - 0 ID=cds-WP_000398683.1;Parent=gene-D5F88_RS00560;Dbxref=GenBank:WP_000398683.1;Name=WP_000398683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650926.1;locus_tag=D5F88_RS00560;product=GRP family sugar transporter;protein_id=WP_000398683.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 108204 108866 . - . ID=gene-D5F88_RS00565;Name=D5F88_RS00565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00565;old_locus_tag=D5F88_00565 NZ_QYTI01000001.1 Protein Homology CDS 108204 108866 . - 0 ID=cds-WP_001871057.1;Parent=gene-D5F88_RS00565;Dbxref=GenBank:WP_001871057.1;Name=WP_001871057.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001868421.1;locus_tag=D5F88_RS00565;product=helix-turn-helix domain-containing protein;protein_id=WP_001871057.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 108941 110422 . - . ID=gene-D5F88_RS00570;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=D5F88_RS00570;old_locus_tag=D5F88_00570 NZ_QYTI01000001.1 Protein Homology CDS 108941 110422 . - 0 ID=cds-WP_000073440.1;Parent=gene-D5F88_RS00570;Dbxref=GenBank:WP_000073440.1;Name=WP_000073440.1;Ontology_term=GO:0006164,GO:0003938;gbkey=CDS;gene=guaB;go_function=IMP dehydrogenase activity|0003938||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003085743.1;locus_tag=D5F88_RS00570;product=IMP dehydrogenase;protein_id=WP_000073440.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 110579 111064 . - . ID=gene-D5F88_RS00575;Name=D5F88_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00575;old_locus_tag=D5F88_00575 NZ_QYTI01000001.1 Protein Homology CDS 110579 111064 . - 0 ID=cds-WP_001034427.1;Parent=gene-D5F88_RS00575;Dbxref=GenBank:WP_001034427.1;Name=WP_001034427.1;Ontology_term=GO:1900079,GO:0003677,GO:0003700,GO:0034618;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,arginine binding|0034618||IEA;go_process=regulation of arginine biosynthetic process|1900079||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058854.1;locus_tag=D5F88_RS00575;product=arginine repressor;protein_id=WP_001034427.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 111074 111754 . - . ID=gene-D5F88_RS00580;Name=D5F88_RS00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00580;old_locus_tag=D5F88_00580 NZ_QYTI01000001.1 Protein Homology CDS 111074 111754 . - 0 ID=cds-WP_000628848.1;Parent=gene-D5F88_RS00580;Dbxref=GenBank:WP_000628848.1;Name=WP_000628848.1;Ontology_term=GO:0003677,GO:0030552;gbkey=CDS;go_function=DNA binding|0003677||IEA,cAMP binding|0030552||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000628850.1;locus_tag=D5F88_RS00580;product=Crp/Fnr family transcriptional regulator;protein_id=WP_000628848.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 111962 112666 . + . ID=gene-D5F88_RS00585;Name=D5F88_RS00585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00585;old_locus_tag=D5F88_00585 NZ_QYTI01000001.1 Protein Homology CDS 111962 112666 . + 0 ID=cds-WP_086163557.1;Parent=gene-D5F88_RS00585;Dbxref=GenBank:WP_086163557.1;Name=WP_086163557.1;Ontology_term=GO:0003723;gbkey=CDS;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000159984.1;locus_tag=D5F88_RS00585;product=B3/B4 domain-containing protein;protein_id=WP_086163557.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 112933 114165 . + . ID=gene-D5F88_RS00590;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=protein_coding;locus_tag=D5F88_RS00590;old_locus_tag=D5F88_00590 NZ_QYTI01000001.1 Protein Homology CDS 112933 114165 . + 0 ID=cds-WP_016481399.1;Parent=gene-D5F88_RS00590;Dbxref=GenBank:WP_016481399.1;Name=WP_016481399.1;Ontology_term=GO:0019546,GO:0016990;gbkey=CDS;gene=arcA;go_function=arginine deiminase activity|0016990||IEA;go_process=L-arginine deiminase pathway|0019546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012560827.1;locus_tag=D5F88_RS00590;product=arginine deiminase;protein_id=WP_016481399.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 114171 114602 . + . ID=gene-D5F88_RS00595;Name=D5F88_RS00595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00595;old_locus_tag=D5F88_00595 NZ_QYTI01000001.1 Protein Homology CDS 114171 114602 . + 0 ID=cds-WP_000772114.1;Parent=gene-D5F88_RS00595;Dbxref=GenBank:WP_000772114.1;Name=WP_000772114.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000772116.1;locus_tag=D5F88_RS00595;product=GNAT family N-acetyltransferase;protein_id=WP_000772114.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 114618 115631 . + . ID=gene-D5F88_RS00600;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=D5F88_RS00600;old_locus_tag=D5F88_00600 NZ_QYTI01000001.1 Protein Homology CDS 114618 115631 . + 0 ID=cds-WP_000195399.1;Parent=gene-D5F88_RS00600;Dbxref=GenBank:WP_000195399.1;Name=WP_000195399.1;Ontology_term=GO:0042450,GO:0004585;gbkey=CDS;gene=argF;go_function=ornithine carbamoyltransferase activity|0004585||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000195397.1;locus_tag=D5F88_RS00600;product=ornithine carbamoyltransferase;protein_id=WP_000195399.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 115694 117121 . + . ID=gene-D5F88_RS00605;Name=arcD;gbkey=Gene;gene=arcD;gene_biotype=protein_coding;locus_tag=D5F88_RS00605;old_locus_tag=D5F88_00605 NZ_QYTI01000001.1 Protein Homology CDS 115694 117121 . + 0 ID=cds-WP_016503359.1;Parent=gene-D5F88_RS00605;Dbxref=GenBank:WP_016503359.1;Name=WP_016503359.1;Ontology_term=GO:0006527,GO:1903826,GO:0043858,GO:0005886;gbkey=CDS;gene=arcD;go_component=plasma membrane|0005886||IEA;go_function=arginine:ornithine antiporter activity|0043858||IEA;go_process=L-arginine catabolic process|0006527||IEA,L-arginine transmembrane transport|1903826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643994.1;locus_tag=D5F88_RS00605;product=arginine-ornithine antiporter;protein_id=WP_016503359.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 117142 118098 . + . ID=gene-D5F88_RS00610;Name=arcC;gbkey=Gene;gene=arcC;gene_biotype=protein_coding;locus_tag=D5F88_RS00610;old_locus_tag=D5F88_00610 NZ_QYTI01000001.1 Protein Homology CDS 117142 118098 . + 0 ID=cds-WP_016503360.1;Parent=gene-D5F88_RS00610;Dbxref=GenBank:WP_016503360.1;Name=WP_016503360.1;Ontology_term=GO:0006520,GO:0008804;gbkey=CDS;gene=arcC;go_function=carbamate kinase activity|0008804||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000237849.1;locus_tag=D5F88_RS00610;product=carbamate kinase;protein_id=WP_016503360.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 118219 119244 . - . ID=gene-D5F88_RS00615;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=D5F88_RS00615;old_locus_tag=D5F88_00615 NZ_QYTI01000001.1 Protein Homology CDS 118219 119244 . - 0 ID=cds-WP_000165475.1;Parent=gene-D5F88_RS00615;Dbxref=GenBank:WP_000165475.1;Name=WP_000165475.1;Ontology_term=GO:0006436,GO:0000166,GO:0004830,GO:0005524;gbkey=CDS;gene=trpS;go_function=nucleotide binding|0000166||IEA,tryptophan-tRNA ligase activity|0004830||IEA,ATP binding|0005524||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000165454.1;locus_tag=D5F88_RS00615;product=tryptophan--tRNA ligase;protein_id=WP_000165475.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 119352 120044 . - . ID=gene-D5F88_RS00620;Name=D5F88_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00620;old_locus_tag=D5F88_00620 NZ_QYTI01000001.1 Protein Homology CDS 119352 120044 . - 0 ID=cds-WP_001250491.1;Parent=gene-D5F88_RS00620;Dbxref=GenBank:WP_001250491.1;Name=WP_001250491.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001250491.1;locus_tag=D5F88_RS00620;product=YoaK family protein;protein_id=WP_001250491.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 120288 121160 . + . ID=gene-D5F88_RS00625;Name=D5F88_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00625;old_locus_tag=D5F88_00625 NZ_QYTI01000001.1 Protein Homology CDS 120288 121160 . + 0 ID=cds-WP_000037681.1;Parent=gene-D5F88_RS00625;Dbxref=GenBank:WP_000037681.1;Name=WP_000037681.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648791.1;locus_tag=D5F88_RS00625;product=YitT family protein;protein_id=WP_000037681.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 121226 122845 . + . ID=gene-D5F88_RS00630;Name=D5F88_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00630;old_locus_tag=D5F88_00630 NZ_QYTI01000001.1 Protein Homology CDS 121226 122845 . + 0 ID=cds-WP_000958804.1;Parent=gene-D5F88_RS00630;Dbxref=GenBank:WP_000958804.1;Name=WP_000958804.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058862.1;locus_tag=D5F88_RS00630;product=ABC-F family ATP-binding cassette domain-containing protein;protein_id=WP_000958804.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 122969 125548 . + . ID=gene-D5F88_RS00635;Name=D5F88_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00635;old_locus_tag=D5F88_00635 NZ_QYTI01000001.1 Protein Homology CDS 122969 125548 . + 0 ID=cds-WP_016503361.1;Parent=gene-D5F88_RS00635;Dbxref=GenBank:WP_016503361.1;Name=WP_016503361.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000154428.1;locus_tag=D5F88_RS00635;product=YfhO family protein;protein_id=WP_016503361.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 125616 125689 . - . ID=gene-D5F88_RS00640;Name=D5F88_RS00640;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00640;old_locus_tag=D5F88_00640 NZ_QYTI01000001.1 tRNAscan-SE tRNA 125616 125689 . - . ID=rna-D5F88_RS00640;Parent=gene-D5F88_RS00640;anticodon=(pos:complement(125653..125655));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00640;product=tRNA-Asn NZ_QYTI01000001.1 tRNAscan-SE exon 125616 125689 . - . ID=exon-D5F88_RS00640-1;Parent=rna-D5F88_RS00640;anticodon=(pos:complement(125653..125655));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00640;product=tRNA-Asn NZ_QYTI01000001.1 RefSeq gene 125719 125790 . - . ID=gene-D5F88_RS00645;Name=D5F88_RS00645;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00645;old_locus_tag=D5F88_00645 NZ_QYTI01000001.1 tRNAscan-SE tRNA 125719 125790 . - . ID=rna-D5F88_RS00645;Parent=gene-D5F88_RS00645;anticodon=(pos:complement(125755..125757));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00645;product=tRNA-Glu NZ_QYTI01000001.1 tRNAscan-SE exon 125719 125790 . - . ID=exon-D5F88_RS00645-1;Parent=rna-D5F88_RS00645;anticodon=(pos:complement(125755..125757));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00645;product=tRNA-Glu NZ_QYTI01000001.1 RefSeq gene 125982 126055 . + . ID=gene-D5F88_RS00650;Name=D5F88_RS00650;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00650;old_locus_tag=D5F88_00650 NZ_QYTI01000001.1 tRNAscan-SE tRNA 125982 126055 . + . ID=rna-D5F88_RS00650;Parent=gene-D5F88_RS00650;anticodon=(pos:126016..126018);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00650;product=tRNA-Arg NZ_QYTI01000001.1 tRNAscan-SE exon 125982 126055 . + . ID=exon-D5F88_RS00650-1;Parent=rna-D5F88_RS00650;anticodon=(pos:126016..126018);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00650;product=tRNA-Arg NZ_QYTI01000001.1 RefSeq gene 126128 126607 . - . ID=gene-D5F88_RS00655;Name=rlmH;gbkey=Gene;gene=rlmH;gene_biotype=protein_coding;locus_tag=D5F88_RS00655;old_locus_tag=D5F88_00655 NZ_QYTI01000001.1 Protein Homology CDS 126128 126607 . - 0 ID=cds-WP_000768336.1;Parent=gene-D5F88_RS00655;Dbxref=GenBank:WP_000768336.1;Name=WP_000768336.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rlmH;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000768335.1;locus_tag=D5F88_RS00655;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=WP_000768336.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 126808 128037 . + . ID=gene-D5F88_RS00660;Name=D5F88_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00660;old_locus_tag=D5F88_00660 NZ_QYTI01000001.1 Protein Homology CDS 126808 128037 . + 0 ID=cds-WP_016503362.1;Parent=gene-D5F88_RS00660;Dbxref=GenBank:WP_016503362.1;Name=WP_016503362.1;Ontology_term=GO:0006508,GO:0004252,GO:0005515;gbkey=CDS;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650333.1;locus_tag=D5F88_RS00660;product=S1C family serine protease;protein_id=WP_016503362.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 128135 128908 . + . ID=gene-D5F88_RS00665;Name=D5F88_RS00665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00665;old_locus_tag=D5F88_00665 NZ_QYTI01000001.1 Protein Homology CDS 128135 128908 . + 0 ID=cds-WP_016503363.1;Parent=gene-D5F88_RS00665;Dbxref=GenBank:WP_016503363.1;Name=WP_016503363.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000456088.1;locus_tag=D5F88_RS00665;product=ParB/RepB/Spo0J family partition protein;protein_id=WP_016503363.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 129117 130478 . + . ID=gene-D5F88_RS00670;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=D5F88_RS00670;old_locus_tag=D5F88_00670 NZ_QYTI01000001.1 Protein Homology CDS 129117 130478 . + 0 ID=cds-WP_086163171.1;Parent=gene-D5F88_RS00670;Dbxref=GenBank:WP_086163171.1;Name=WP_086163171.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012657571.1;locus_tag=D5F88_RS00670;product=chromosomal replication initiator protein DnaA;protein_id=WP_086163171.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 130633 131769 . + . ID=gene-D5F88_RS00675;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=D5F88_RS00675;old_locus_tag=D5F88_00675 NZ_QYTI01000001.1 Protein Homology CDS 130633 131769 . + 0 ID=cds-WP_016502364.1;Parent=gene-D5F88_RS00675;Dbxref=GenBank:WP_016502364.1;Name=WP_016502364.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002262647.1;locus_tag=D5F88_RS00675;product=DNA polymerase III subunit beta;protein_id=WP_016502364.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 131827 132720 . + . ID=gene-D5F88_RS00680;Name=D5F88_RS00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00680;old_locus_tag=D5F88_00680 NZ_QYTI01000001.1 Protein Homology CDS 131827 132720 . + 0 ID=cds-WP_180383565.1;Parent=gene-D5F88_RS00680;Dbxref=GenBank:WP_180383565.1;Name=WP_180383565.1;Ontology_term=GO:0008654,GO:0016310,GO:0001727,GO:0005524;gbkey=CDS;go_function=lipid kinase activity|0001727||IEA,ATP binding|0005524||IEA;go_process=phospholipid biosynthetic process|0008654||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000987440.1;locus_tag=D5F88_RS00680;product=diacylglycerol/lipid kinase family protein;protein_id=WP_180383565.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 132730 132927 . + . ID=gene-D5F88_RS00685;Name=D5F88_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00685;old_locus_tag=D5F88_00685 NZ_QYTI01000001.1 Protein Homology CDS 132730 132927 . + 0 ID=cds-WP_000285199.1;Parent=gene-D5F88_RS00685;Dbxref=GenBank:WP_000285199.1;Name=WP_000285199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003048966.1;locus_tag=D5F88_RS00685;product=DUF951 domain-containing protein;protein_id=WP_000285199.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 133095 133247 . + . ID=gene-D5F88_RS00690;Name=D5F88_RS00690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00690;old_locus_tag=D5F88_00690 NZ_QYTI01000001.1 Protein Homology CDS 133095 133247 . + 0 ID=cds-WP_257638777.1;Parent=gene-D5F88_RS00690;Dbxref=GenBank:WP_257638777.1;Name=WP_257638777.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000369335.1;locus_tag=D5F88_RS00690;product=helix-turn-helix domain-containing protein;protein_id=WP_257638777.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 133491 134606 . + . ID=gene-D5F88_RS00695;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=D5F88_RS00695;old_locus_tag=D5F88_00695 NZ_QYTI01000001.1 Protein Homology CDS 133491 134606 . + 0 ID=cds-WP_001218686.1;Parent=gene-D5F88_RS00695;Dbxref=GenBank:WP_001218686.1;Name=WP_001218686.1;Ontology_term=GO:0005524,GO:0005525,GO:0016887;gbkey=CDS;gene=ychF;go_function=ATP binding|0005524||IEA,GTP binding|0005525||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002269933.1;locus_tag=D5F88_RS00695;product=redox-regulated ATPase YchF;protein_id=WP_001218686.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 134690 135265 . + . ID=gene-D5F88_RS00700;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=D5F88_RS00700;old_locus_tag=D5F88_00700 NZ_QYTI01000001.1 Protein Homology CDS 134690 135265 . + 0 ID=cds-WP_000240202.1;Parent=gene-D5F88_RS00700;Dbxref=GenBank:WP_000240202.1;Name=WP_000240202.1;Ontology_term=GO:0004045;gbkey=CDS;gene=pth;go_function=peptidyl-tRNA hydrolase activity|0004045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000240196.1;locus_tag=D5F88_RS00700;product=aminoacyl-tRNA hydrolase;protein_id=WP_000240202.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 135262 138759 . + . ID=gene-D5F88_RS00705;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=D5F88_RS00705;old_locus_tag=D5F88_00705 NZ_QYTI01000001.1 Protein Homology CDS 135262 138759 . + 0 ID=cds-WP_016502366.1;Parent=gene-D5F88_RS00705;Dbxref=GenBank:WP_016502366.1;Name=WP_016502366.1;Ontology_term=GO:0006281,GO:0003684,GO:0005524;gbkey=CDS;gene=mfd;go_function=damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001021186.1;locus_tag=D5F88_RS00705;product=transcription-repair coupling factor;protein_id=WP_016502366.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 139050 139322 . + . ID=gene-D5F88_RS00715;Name=D5F88_RS00715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00715;old_locus_tag=D5F88_00715 NZ_QYTI01000001.1 Protein Homology CDS 139050 139322 . + 0 ID=cds-WP_001234967.1;Parent=gene-D5F88_RS00715;Dbxref=GenBank:WP_001234967.1;Name=WP_001234967.1;Ontology_term=GO:0003723;gbkey=CDS;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001234967.1;locus_tag=D5F88_RS00715;product=RNA-binding S4 domain-containing protein;protein_id=WP_001234967.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 139309 139680 . + . ID=gene-D5F88_RS00720;Name=D5F88_RS00720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00720;old_locus_tag=D5F88_00720 NZ_QYTI01000001.1 Protein Homology CDS 139309 139680 . + 0 ID=cds-WP_000042845.1;Parent=gene-D5F88_RS00720;Dbxref=GenBank:WP_000042845.1;Name=WP_000042845.1;Ontology_term=GO:0051301;gbkey=CDS;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000042845.1;locus_tag=D5F88_RS00720;product=septum formation initiator family protein;protein_id=WP_000042845.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 139683 139817 . + . ID=gene-D5F88_RS00725;Name=D5F88_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00725;old_locus_tag=D5F88_00725 NZ_QYTI01000001.1 Protein Homology CDS 139683 139817 . + 0 ID=cds-WP_001061058.1;Parent=gene-D5F88_RS00725;Dbxref=GenBank:WP_001061058.1;Name=WP_001061058.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001061058.1;locus_tag=D5F88_RS00725;product=SP_0009 family protein;protein_id=WP_001061058.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 139817 141103 . + . ID=gene-D5F88_RS00730;Name=D5F88_RS00730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00730;old_locus_tag=D5F88_00730 NZ_QYTI01000001.1 Protein Homology CDS 139817 141103 . + 0 ID=cds-WP_000757205.1;Parent=gene-D5F88_RS00730;Dbxref=GenBank:WP_000757205.1;Name=WP_000757205.1;Ontology_term=GO:0030655,GO:0008800;gbkey=CDS;go_function=beta-lactamase activity|0008800||IEA;go_process=beta-lactam antibiotic catabolic process|0030655||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000757202.1;locus_tag=D5F88_RS00730;product=serine hydrolase;protein_id=WP_000757205.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 141105 142379 . + . ID=gene-D5F88_RS00735;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=D5F88_RS00735;old_locus_tag=D5F88_00735 NZ_QYTI01000001.1 Protein Homology CDS 141105 142379 . + 0 ID=cds-WP_016502367.1;Parent=gene-D5F88_RS00735;Dbxref=GenBank:WP_016502367.1;Name=WP_016502367.1;Ontology_term=GO:0008033,GO:0000166,GO:0005524,GO:0016879;gbkey=CDS;gene=tilS;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA,ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058263.1;locus_tag=D5F88_RS00735;product=tRNA lysidine(34) synthetase TilS;protein_id=WP_016502367.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 142384 142926 . + . ID=gene-D5F88_RS00740;Name=hpt;gbkey=Gene;gene=hpt;gene_biotype=protein_coding;locus_tag=D5F88_RS00740;old_locus_tag=D5F88_00740 NZ_QYTI01000001.1 Protein Homology CDS 142384 142926 . + 0 ID=cds-WP_000892188.1;Parent=gene-D5F88_RS00740;Dbxref=GenBank:WP_000892188.1;Name=WP_000892188.1;Ontology_term=GO:0006166;gbkey=CDS;gene=hpt;go_process=purine ribonucleoside salvage|0006166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012961310.1;locus_tag=D5F88_RS00740;product=hypoxanthine phosphoribosyltransferase;protein_id=WP_000892188.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 142949 144925 . + . ID=gene-D5F88_RS00745;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=D5F88_RS00745;old_locus_tag=D5F88_00745 NZ_QYTI01000001.1 Protein Homology CDS 142949 144925 . + 0 ID=cds-WP_000794525.1;Parent=gene-D5F88_RS00745;Dbxref=GenBank:WP_000794525.1;Name=WP_000794525.1;Ontology_term=GO:0006508,GO:0051301,GO:0004222,GO:0016887,GO:0016020;gbkey=CDS;gene=ftsH;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,ATP hydrolysis activity|0016887||IEA;go_process=proteolysis|0006508||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480147.1;locus_tag=D5F88_RS00745;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_000794525.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 145417 146965 . + . ID=gene-D5F88_RS00750;Name=D5F88_RS00750;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS00750;old_locus_tag=D5F88_00750 NZ_QYTI01000001.1 cmsearch rRNA 145417 146965 . + . ID=rna-D5F88_RS00750;Parent=gene-D5F88_RS00750;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS00750;product=16S ribosomal RNA NZ_QYTI01000001.1 cmsearch exon 145417 146965 . + . ID=exon-D5F88_RS00750-1;Parent=rna-D5F88_RS00750;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS00750;product=16S ribosomal RNA NZ_QYTI01000001.1 RefSeq gene 147020 147092 . + . ID=gene-D5F88_RS00755;Name=D5F88_RS00755;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00755;old_locus_tag=D5F88_00755 NZ_QYTI01000001.1 tRNAscan-SE tRNA 147020 147092 . + . ID=rna-D5F88_RS00755;Parent=gene-D5F88_RS00755;anticodon=(pos:147053..147055);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00755;product=tRNA-Ala NZ_QYTI01000001.1 tRNAscan-SE exon 147020 147092 . + . ID=exon-D5F88_RS00755-1;Parent=rna-D5F88_RS00755;anticodon=(pos:147053..147055);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00755;product=tRNA-Ala NZ_QYTI01000001.1 RefSeq gene 147247 150149 . + . ID=gene-D5F88_RS00760;Name=D5F88_RS00760;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS00760;old_locus_tag=D5F88_00760 NZ_QYTI01000001.1 cmsearch rRNA 147247 150149 . + . ID=rna-D5F88_RS00760;Parent=gene-D5F88_RS00760;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS00760;product=23S ribosomal RNA NZ_QYTI01000001.1 cmsearch exon 147247 150149 . + . ID=exon-D5F88_RS00760-1;Parent=rna-D5F88_RS00760;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS00760;product=23S ribosomal RNA NZ_QYTI01000001.1 RefSeq gene 150224 150339 . + . ID=gene-D5F88_RS00765;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=D5F88_RS00765;old_locus_tag=D5F88_00765 NZ_QYTI01000001.1 cmsearch rRNA 150224 150339 . + . ID=rna-D5F88_RS00765;Parent=gene-D5F88_RS00765;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS00765;product=5S ribosomal RNA NZ_QYTI01000001.1 cmsearch exon 150224 150339 . + . ID=exon-D5F88_RS00765-1;Parent=rna-D5F88_RS00765;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS00765;product=5S ribosomal RNA NZ_QYTI01000001.1 RefSeq gene 150343 150415 . + . ID=gene-D5F88_RS00770;Name=D5F88_RS00770;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00770;old_locus_tag=D5F88_00770 NZ_QYTI01000001.1 tRNAscan-SE tRNA 150343 150415 . + . ID=rna-D5F88_RS00770;Parent=gene-D5F88_RS00770;anticodon=(pos:150376..150378);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00770;product=tRNA-Val NZ_QYTI01000001.1 tRNAscan-SE exon 150343 150415 . + . ID=exon-D5F88_RS00770-1;Parent=rna-D5F88_RS00770;anticodon=(pos:150376..150378);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00770;product=tRNA-Val NZ_QYTI01000001.1 RefSeq gene 150421 150491 . + . ID=gene-D5F88_RS00775;Name=D5F88_RS00775;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00775;old_locus_tag=D5F88_00775 NZ_QYTI01000001.1 tRNAscan-SE tRNA 150421 150491 . + . ID=rna-D5F88_RS00775;Parent=gene-D5F88_RS00775;anticodon=(pos:150453..150455);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00775;product=tRNA-Gly NZ_QYTI01000001.1 tRNAscan-SE exon 150421 150491 . + . ID=exon-D5F88_RS00775-1;Parent=rna-D5F88_RS00775;anticodon=(pos:150453..150455);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00775;product=tRNA-Gly NZ_QYTI01000001.1 RefSeq gene 150528 150601 . + . ID=gene-D5F88_RS00780;Name=D5F88_RS00780;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00780;old_locus_tag=D5F88_00780 NZ_QYTI01000001.1 tRNAscan-SE tRNA 150528 150601 . + . ID=rna-D5F88_RS00780;Parent=gene-D5F88_RS00780;anticodon=(pos:150562..150564);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00780;product=tRNA-Ile NZ_QYTI01000001.1 tRNAscan-SE exon 150528 150601 . + . ID=exon-D5F88_RS00780-1;Parent=rna-D5F88_RS00780;anticodon=(pos:150562..150564);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00780;product=tRNA-Ile NZ_QYTI01000001.1 RefSeq gene 150612 150683 . + . ID=gene-D5F88_RS00785;Name=D5F88_RS00785;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00785;old_locus_tag=D5F88_00785 NZ_QYTI01000001.1 tRNAscan-SE tRNA 150612 150683 . + . ID=rna-D5F88_RS00785;Parent=gene-D5F88_RS00785;anticodon=(pos:150645..150647);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00785;product=tRNA-Glu NZ_QYTI01000001.1 tRNAscan-SE exon 150612 150683 . + . ID=exon-D5F88_RS00785-1;Parent=rna-D5F88_RS00785;anticodon=(pos:150645..150647);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00785;product=tRNA-Glu NZ_QYTI01000001.1 RefSeq gene 150697 150786 . + . ID=gene-D5F88_RS00790;Name=D5F88_RS00790;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00790;old_locus_tag=D5F88_00790 NZ_QYTI01000001.1 tRNAscan-SE tRNA 150697 150786 . + . ID=rna-D5F88_RS00790;Parent=gene-D5F88_RS00790;anticodon=(pos:150733..150735);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00790;product=tRNA-Ser NZ_QYTI01000001.1 tRNAscan-SE exon 150697 150786 . + . ID=exon-D5F88_RS00790-1;Parent=rna-D5F88_RS00790;anticodon=(pos:150733..150735);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00790;product=tRNA-Ser NZ_QYTI01000001.1 RefSeq gene 150797 150870 . + . ID=gene-D5F88_RS00795;Name=D5F88_RS00795;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00795;old_locus_tag=D5F88_00795 NZ_QYTI01000001.1 tRNAscan-SE tRNA 150797 150870 . + . ID=rna-D5F88_RS00795;Parent=gene-D5F88_RS00795;anticodon=(pos:150831..150833);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00795;product=tRNA-Met NZ_QYTI01000001.1 tRNAscan-SE exon 150797 150870 . + . ID=exon-D5F88_RS00795-1;Parent=rna-D5F88_RS00795;anticodon=(pos:150831..150833);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00795;product=tRNA-Met NZ_QYTI01000001.1 RefSeq gene 150873 150945 . + . ID=gene-D5F88_RS00800;Name=D5F88_RS00800;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00800;old_locus_tag=D5F88_00800 NZ_QYTI01000001.1 tRNAscan-SE tRNA 150873 150945 . + . ID=rna-D5F88_RS00800;Parent=gene-D5F88_RS00800;anticodon=(pos:150906..150908);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00800;product=tRNA-Phe NZ_QYTI01000001.1 tRNAscan-SE exon 150873 150945 . + . ID=exon-D5F88_RS00800-1;Parent=rna-D5F88_RS00800;anticodon=(pos:150906..150908);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00800;product=tRNA-Phe NZ_QYTI01000001.1 RefSeq gene 150957 151037 . + . ID=gene-D5F88_RS00805;Name=D5F88_RS00805;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00805;old_locus_tag=D5F88_00805 NZ_QYTI01000001.1 tRNAscan-SE tRNA 150957 151037 . + . ID=rna-D5F88_RS00805;Parent=gene-D5F88_RS00805;anticodon=(pos:150991..150993);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00805;product=tRNA-Tyr NZ_QYTI01000001.1 tRNAscan-SE exon 150957 151037 . + . ID=exon-D5F88_RS00805-1;Parent=rna-D5F88_RS00805;anticodon=(pos:150991..150993);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00805;product=tRNA-Tyr NZ_QYTI01000001.1 RefSeq gene 151044 151114 . + . ID=gene-D5F88_RS00810;Name=D5F88_RS00810;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00810;old_locus_tag=D5F88_00810 NZ_QYTI01000001.1 tRNAscan-SE tRNA 151044 151114 . + . ID=rna-D5F88_RS00810;Parent=gene-D5F88_RS00810;anticodon=(pos:151076..151078);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00810;product=tRNA-Trp NZ_QYTI01000001.1 tRNAscan-SE exon 151044 151114 . + . ID=exon-D5F88_RS00810-1;Parent=rna-D5F88_RS00810;anticodon=(pos:151076..151078);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00810;product=tRNA-Trp NZ_QYTI01000001.1 RefSeq gene 151129 151201 . + . ID=gene-D5F88_RS00815;Name=D5F88_RS00815;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00815;old_locus_tag=D5F88_00815 NZ_QYTI01000001.1 tRNAscan-SE tRNA 151129 151201 . + . ID=rna-D5F88_RS00815;Parent=gene-D5F88_RS00815;anticodon=(pos:151162..151164);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00815;product=tRNA-His NZ_QYTI01000001.1 tRNAscan-SE exon 151129 151201 . + . ID=exon-D5F88_RS00815-1;Parent=rna-D5F88_RS00815;anticodon=(pos:151162..151164);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00815;product=tRNA-His NZ_QYTI01000001.1 RefSeq gene 151208 151279 . + . ID=gene-D5F88_RS00820;Name=D5F88_RS00820;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00820;old_locus_tag=D5F88_00820 NZ_QYTI01000001.1 tRNAscan-SE tRNA 151208 151279 . + . ID=rna-D5F88_RS00820;Parent=gene-D5F88_RS00820;anticodon=(pos:151240..151242);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00820;product=tRNA-Gln NZ_QYTI01000001.1 tRNAscan-SE exon 151208 151279 . + . ID=exon-D5F88_RS00820-1;Parent=rna-D5F88_RS00820;anticodon=(pos:151240..151242);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00820;product=tRNA-Gln NZ_QYTI01000001.1 RefSeq gene 151290 151373 . + . ID=gene-D5F88_RS00825;Name=D5F88_RS00825;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00825;old_locus_tag=D5F88_00825 NZ_QYTI01000001.1 tRNAscan-SE tRNA 151290 151373 . + . ID=rna-D5F88_RS00825;Parent=gene-D5F88_RS00825;anticodon=(pos:151324..151326);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00825;product=tRNA-Leu NZ_QYTI01000001.1 tRNAscan-SE exon 151290 151373 . + . ID=exon-D5F88_RS00825-1;Parent=rna-D5F88_RS00825;anticodon=(pos:151324..151326);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00825;product=tRNA-Leu NZ_QYTI01000001.1 RefSeq gene 151787 152218 . + . ID=gene-D5F88_RS11770;Name=D5F88_RS11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11770 NZ_QYTI01000001.1 Protein Homology CDS 151787 152218 . + 0 ID=cds-WP_000761053.1;Parent=gene-D5F88_RS11770;Dbxref=GenBank:WP_000761053.1;Name=WP_000761053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480188.1;locus_tag=D5F88_RS11770;product=hypothetical protein;protein_id=WP_000761053.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 152288 152458 . + . ID=gene-D5F88_RS00840;Name=D5F88_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00840;old_locus_tag=D5F88_00840 NZ_QYTI01000001.1 Protein Homology CDS 152288 152458 . + 0 ID=cds-WP_000840973.1;Parent=gene-D5F88_RS00840;Dbxref=GenBank:WP_000840973.1;Name=WP_000840973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000840973.1;locus_tag=D5F88_RS00840;product=hypothetical protein;protein_id=WP_000840973.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 153374 153925 . + . ID=gene-D5F88_RS00845;Name=D5F88_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00845;old_locus_tag=D5F88_00845 NZ_QYTI01000001.1 Protein Homology CDS 153374 153925 . + 0 ID=cds-WP_000161847.1;Parent=gene-D5F88_RS00845;Dbxref=GenBank:WP_000161847.1;Name=WP_000161847.1;Ontology_term=GO:0000166,GO:0016779,GO:0046872;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,nucleotidyltransferase activity|0016779||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631726.1;locus_tag=D5F88_RS00845;product=nucleotidyltransferase family protein;protein_id=WP_000161847.1;transl_table=11 NZ_QYTI01000001.1 RefSeq pseudogene 154151 154563 . + . ID=gene-D5F88_RS00850;Name=D5F88_RS00850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS00850;old_locus_tag=D5F88_00850;pseudo=true NZ_QYTI01000001.1 Protein Homology CDS 154151 154563 . + 0 ID=cds-D5F88_RS00850;Parent=gene-D5F88_RS00850;Note=frameshifted;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022654.6;locus_tag=D5F88_RS00850;product=YjdF family protein;pseudo=true;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 154763 155242 . + . ID=gene-D5F88_RS00855;Name=D5F88_RS00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00855;old_locus_tag=D5F88_00855 NZ_QYTI01000001.1 Protein Homology CDS 154763 155242 . + 0 ID=cds-WP_180383567.1;Parent=gene-D5F88_RS00855;Dbxref=GenBank:WP_180383567.1;Name=WP_180383567.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001204194.1;locus_tag=D5F88_RS00855;product=sigma-70 family RNA polymerase sigma factor;protein_id=WP_180383567.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 155365 156057 . + . ID=gene-D5F88_RS00860;Name=D5F88_RS00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00860;old_locus_tag=D5F88_00860 NZ_QYTI01000001.1 Protein Homology CDS 155365 156057 . + 0 ID=cds-WP_000049272.1;Parent=gene-D5F88_RS00860;Dbxref=GenBank:WP_000049272.1;Name=WP_000049272.1;Ontology_term=GO:0016791;gbkey=CDS;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000049270.1;locus_tag=D5F88_RS00860;product=histidine phosphatase family protein;protein_id=WP_000049272.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 156054 156806 . + . ID=gene-D5F88_RS00865;Name=D5F88_RS00865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00865;old_locus_tag=D5F88_00865 NZ_QYTI01000001.1 Protein Homology CDS 156054 156806 . + 0 ID=cds-WP_000739663.1;Parent=gene-D5F88_RS00865;Dbxref=GenBank:WP_000739663.1;Name=WP_000739663.1;Ontology_term=GO:0006508,GO:0008270,GO:0016787;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,hydrolase activity|0016787||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000739664.1;locus_tag=D5F88_RS00865;product=M15 family metallopeptidase;protein_id=WP_000739663.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 156803 157378 . + . ID=gene-D5F88_RS00870;Name=D5F88_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00870;old_locus_tag=D5F88_00870 NZ_QYTI01000001.1 Protein Homology CDS 156803 157378 . + 0 ID=cds-WP_001231504.1;Parent=gene-D5F88_RS00870;Dbxref=GenBank:WP_001231504.1;Name=WP_001231504.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767148.1;locus_tag=D5F88_RS00870;product=glycoside hydrolase family 73 protein;protein_id=WP_001231504.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 157521 158555 . + . ID=gene-D5F88_RS00875;Name=hrcA;gbkey=Gene;gene=hrcA;gene_biotype=protein_coding;locus_tag=D5F88_RS00875;old_locus_tag=D5F88_00875 NZ_QYTI01000001.1 Protein Homology CDS 157521 158555 . + 0 ID=cds-WP_001872861.1;Parent=gene-D5F88_RS00875;Dbxref=GenBank:WP_001872861.1;Name=WP_001872861.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=hrcA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015911815.1;locus_tag=D5F88_RS00875;product=heat-inducible transcriptional repressor HrcA;protein_id=WP_001872861.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 158558 159130 . + . ID=gene-D5F88_RS00880;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=D5F88_RS00880;old_locus_tag=D5F88_00880 NZ_QYTI01000001.1 Protein Homology CDS 158558 159130 . + 0 ID=cds-WP_001872862.1;Parent=gene-D5F88_RS00880;Dbxref=GenBank:WP_001872862.1;Name=WP_001872862.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002988583.1;locus_tag=D5F88_RS00880;product=nucleotide exchange factor GrpE;protein_id=WP_001872862.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 159311 161140 . + . ID=gene-D5F88_RS00885;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=D5F88_RS00885;old_locus_tag=D5F88_00885 NZ_QYTI01000001.1 Protein Homology CDS 159311 161140 . + 0 ID=cds-WP_000034648.1;Parent=gene-D5F88_RS00885;Dbxref=GenBank:WP_000034648.1;Name=WP_000034648.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002946936.1;locus_tag=D5F88_RS00885;product=molecular chaperone DnaK;protein_id=WP_000034648.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 161429 162583 . + . ID=gene-D5F88_RS00890;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=D5F88_RS00890;old_locus_tag=D5F88_00890 NZ_QYTI01000001.1 Protein Homology CDS 161429 162583 . + 0 ID=cds-WP_086163180.1;Parent=gene-D5F88_RS00890;Dbxref=GenBank:WP_086163180.1;Name=WP_086163180.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=dnaJ;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647541.1;locus_tag=D5F88_RS00890;product=molecular chaperone DnaJ;protein_id=WP_086163180.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 162697 163944 . + . ID=gene-D5F88_RS00895;Name=D5F88_RS00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00895;old_locus_tag=D5F88_00895 NZ_QYTI01000001.1 Protein Homology CDS 162697 163944 . + 0 ID=cds-WP_000256866.1;Parent=gene-D5F88_RS00895;Dbxref=GenBank:WP_000256866.1;Name=WP_000256866.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058290.1;locus_tag=D5F88_RS00895;product=aminotransferase-like domain-containing protein;protein_id=WP_000256866.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 164015 164791 . + . ID=gene-D5F88_RS00900;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=D5F88_RS00900;old_locus_tag=D5F88_00900 NZ_QYTI01000001.1 Protein Homology CDS 164015 164791 . + 0 ID=cds-WP_000199161.1;Parent=gene-D5F88_RS00900;Dbxref=GenBank:WP_000199161.1;Name=WP_000199161.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058291.1;locus_tag=D5F88_RS00900;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=WP_000199161.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 164754 165512 . + . ID=gene-D5F88_RS00905;Name=D5F88_RS00905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00905;old_locus_tag=D5F88_00905 NZ_QYTI01000001.1 Protein Homology CDS 164754 165512 . + 0 ID=cds-WP_000857670.1;Parent=gene-D5F88_RS00905;Dbxref=GenBank:WP_000857670.1;Name=WP_000857670.1;Ontology_term=GO:0009228,GO:0008972;gbkey=CDS;go_function=phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000857667.1;locus_tag=D5F88_RS00905;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=WP_000857670.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 165522 165986 . + . ID=gene-D5F88_RS00910;Name=D5F88_RS00910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00910;old_locus_tag=D5F88_00910 NZ_QYTI01000001.1 Protein Homology CDS 165522 165986 . + 0 ID=cds-WP_001224404.1;Parent=gene-D5F88_RS00910;Dbxref=GenBank:WP_001224404.1;Name=WP_001224404.1;Ontology_term=GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001224404.1;locus_tag=D5F88_RS00910;product=ECF transporter S component;protein_id=WP_001224404.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 165983 166552 . + . ID=gene-D5F88_RS00915;Name=D5F88_RS00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00915;old_locus_tag=D5F88_00915 NZ_QYTI01000001.1 Protein Homology CDS 165983 166552 . + 0 ID=cds-WP_000599671.1;Parent=gene-D5F88_RS00915;Dbxref=GenBank:WP_000599671.1;Name=WP_000599671.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000599673.1;locus_tag=D5F88_RS00915;product=TIGR01440 family protein;protein_id=WP_000599671.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 166589 167431 . - . ID=gene-D5F88_RS00920;Name=D5F88_RS00920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00920;old_locus_tag=D5F88_00920 NZ_QYTI01000001.1 Protein Homology CDS 166589 167431 . - 0 ID=cds-WP_016502404.1;Parent=gene-D5F88_RS00920;Dbxref=GenBank:WP_016502404.1;Name=WP_016502404.1;Ontology_term=GO:0055085,GO:0008381,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502404.1;locus_tag=D5F88_RS00920;product=mechanosensitive ion channel family protein;protein_id=WP_016502404.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 167588 168871 . + . ID=gene-D5F88_RS00925;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=D5F88_RS00925;old_locus_tag=D5F88_00925 NZ_QYTI01000001.1 Protein Homology CDS 167588 168871 . + 0 ID=cds-WP_000107750.1;Parent=gene-D5F88_RS00925;Dbxref=GenBank:WP_000107750.1;Name=WP_000107750.1;Ontology_term=GO:0015031,GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process=protein transport|0015031||IEA,'de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645628.1;locus_tag=D5F88_RS00925;product=trigger factor;protein_id=WP_000107750.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 169060 169635 . + . ID=gene-D5F88_RS00930;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=D5F88_RS00930;old_locus_tag=D5F88_00930 NZ_QYTI01000001.1 Protein Homology CDS 169060 169635 . + 0 ID=cds-WP_000418426.1;Parent=gene-D5F88_RS00930;Dbxref=GenBank:WP_000418426.1;Name=WP_000418426.1;Ontology_term=GO:0006351,GO:0006355,GO:0003899;gbkey=CDS;gene=rpoE;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000418426.1;locus_tag=D5F88_RS00930;product=DNA-directed RNA polymerase subunit delta;protein_id=WP_000418426.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 169908 171512 . + . ID=gene-D5F88_RS00935;Name=D5F88_RS00935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00935;old_locus_tag=D5F88_00935 NZ_QYTI01000001.1 Protein Homology CDS 169908 171512 . + 0 ID=cds-WP_016502405.1;Parent=gene-D5F88_RS00935;Dbxref=GenBank:WP_016502405.1;Name=WP_016502405.1;Ontology_term=GO:0006221,GO:0006241,GO:0003883;gbkey=CDS;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,CTP biosynthetic process|0006241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000170438.1;locus_tag=D5F88_RS00935;product=CTP synthase;protein_id=WP_016502405.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 171621 172547 . + . ID=gene-D5F88_RS00940;Name=D5F88_RS00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00940;old_locus_tag=D5F88_00940 NZ_QYTI01000001.1 Protein Homology CDS 171621 172547 . + 0 ID=cds-WP_000723853.1;Parent=gene-D5F88_RS00940;Dbxref=GenBank:WP_000723853.1;Name=WP_000723853.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000723856.1;locus_tag=D5F88_RS00940;product=alpha/beta hydrolase;protein_id=WP_000723853.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 172594 172679 . + . ID=gene-D5F88_RS00945;Name=D5F88_RS00945;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS00945;old_locus_tag=D5F88_00945 NZ_QYTI01000001.1 tRNAscan-SE tRNA 172594 172679 . + . ID=rna-D5F88_RS00945;Parent=gene-D5F88_RS00945;anticodon=(pos:172628..172630);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00945;product=tRNA-Leu NZ_QYTI01000001.1 tRNAscan-SE exon 172594 172679 . + . ID=exon-D5F88_RS00945-1;Parent=rna-D5F88_RS00945;anticodon=(pos:172628..172630);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS00945;product=tRNA-Leu NZ_QYTI01000001.1 RefSeq gene 172742 173188 . + . ID=gene-D5F88_RS00950;Name=D5F88_RS00950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00950;old_locus_tag=D5F88_00950 NZ_QYTI01000001.1 Protein Homology CDS 172742 173188 . + 0 ID=cds-WP_016502406.1;Parent=gene-D5F88_RS00950;Dbxref=GenBank:WP_016502406.1;Name=WP_016502406.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000049187.1;locus_tag=D5F88_RS00950;product=dUTP diphosphatase;protein_id=WP_016502406.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 173350 174714 . + . ID=gene-D5F88_RS00955;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=D5F88_RS00955;old_locus_tag=D5F88_00955 NZ_QYTI01000001.1 Protein Homology CDS 173350 174714 . + 0 ID=cds-WP_001085195.1;Parent=gene-D5F88_RS00955;Dbxref=GenBank:WP_001085195.1;Name=WP_001085195.1;Ontology_term=GO:0006281,GO:0003684,GO:0005524;gbkey=CDS;gene=radA;go_function=damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650544.1;locus_tag=D5F88_RS00955;product=DNA repair protein RadA;protein_id=WP_001085195.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 174850 175347 . + . ID=gene-D5F88_RS00960;Name=D5F88_RS00960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00960;old_locus_tag=D5F88_00960 NZ_QYTI01000001.1 Protein Homology CDS 174850 175347 . + 0 ID=cds-WP_000214743.1;Parent=gene-D5F88_RS00960;Dbxref=GenBank:WP_000214743.1;Name=WP_000214743.1;Ontology_term=GO:0004089,GO:0008270;gbkey=CDS;go_function=carbonate dehydratase activity|0004089||IEA,zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643839.1;locus_tag=D5F88_RS00960;product=beta-class carbonic anhydrase;protein_id=WP_000214743.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 175501 176820 . + . ID=gene-D5F88_RS00965;Name=D5F88_RS00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00965;old_locus_tag=D5F88_00965 NZ_QYTI01000001.1 Protein Homology CDS 175501 176820 . + 0 ID=cds-WP_000759711.1;Parent=gene-D5F88_RS00965;Dbxref=GenBank:WP_000759711.1;Name=WP_000759711.1;Ontology_term=GO:0045454,GO:0016668,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD(P) as acceptor|0016668||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631733.1;locus_tag=D5F88_RS00965;product=FAD-containing oxidoreductase;protein_id=WP_000759711.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 177029 178483 . + . ID=gene-D5F88_RS00970;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=D5F88_RS00970;old_locus_tag=D5F88_00970 NZ_QYTI01000001.1 Protein Homology CDS 177029 178483 . + 0 ID=cds-WP_086163182.1;Parent=gene-D5F88_RS00970;Dbxref=GenBank:WP_086163182.1;Name=WP_086163182.1;Ontology_term=GO:0006424,GO:0000166,GO:0004818,GO:0005524;gbkey=CDS;gene=gltX;go_function=nucleotide binding|0000166||IEA,glutamate-tRNA ligase activity|0004818||IEA,ATP binding|0005524||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058297.1;locus_tag=D5F88_RS00970;product=glutamate--tRNA ligase;protein_id=WP_086163182.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 178523 179491 . - . ID=gene-D5F88_RS00975;Name=D5F88_RS00975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00975;old_locus_tag=D5F88_00975 NZ_QYTI01000001.1 Protein Homology CDS 178523 179491 . - 0 ID=cds-WP_000668258.1;Parent=gene-D5F88_RS00975;Dbxref=GenBank:WP_000668258.1;Name=WP_000668258.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647360.1;locus_tag=D5F88_RS00975;product=substrate-binding domain-containing protein;protein_id=WP_000668258.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 179544 180485 . - . ID=gene-D5F88_RS00980;Name=D5F88_RS00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00980;old_locus_tag=D5F88_00980 NZ_QYTI01000001.1 Protein Homology CDS 179544 180485 . - 0 ID=cds-WP_000794185.1;Parent=gene-D5F88_RS00980;Dbxref=GenBank:WP_000794185.1;Name=WP_000794185.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771495.1;locus_tag=D5F88_RS00980;product=ABC transporter permease subunit;protein_id=WP_000794185.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 180487 181965 . - . ID=gene-D5F88_RS00985;Name=D5F88_RS00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS00985;old_locus_tag=D5F88_00985 NZ_QYTI01000001.1 Protein Homology CDS 180487 181965 . - 0 ID=cds-WP_086163183.1;Parent=gene-D5F88_RS00985;Dbxref=GenBank:WP_086163183.1;Name=WP_086163183.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767714.1;locus_tag=D5F88_RS00985;product=sugar ABC transporter ATP-binding protein;protein_id=WP_086163183.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 181981 182379 . - . ID=gene-D5F88_RS00990;Name=rbsD;gbkey=Gene;gene=rbsD;gene_biotype=protein_coding;locus_tag=D5F88_RS00990;old_locus_tag=D5F88_00990 NZ_QYTI01000001.1 Protein Homology CDS 181981 182379 . - 0 ID=cds-WP_000750737.1;Parent=gene-D5F88_RS00990;Dbxref=GenBank:WP_000750737.1;Name=WP_000750737.1;Ontology_term=GO:0016872;gbkey=CDS;gene=rbsD;go_function=intramolecular lyase activity|0016872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000750742.1;locus_tag=D5F88_RS00990;product=D-ribose pyranase;protein_id=WP_000750737.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 182354 183265 . - . ID=gene-D5F88_RS00995;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=protein_coding;locus_tag=D5F88_RS00995;old_locus_tag=D5F88_00995 NZ_QYTI01000001.1 Protein Homology CDS 182354 183265 . - 0 ID=cds-WP_016502411.1;Parent=gene-D5F88_RS00995;Dbxref=GenBank:WP_016502411.1;Name=WP_016502411.1;Ontology_term=GO:0006014,GO:0004747;gbkey=CDS;gene=rbsK;go_function=ribokinase activity|0004747||IEA;go_process=D-ribose metabolic process|0006014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000065863.1;locus_tag=D5F88_RS00995;product=ribokinase;protein_id=WP_016502411.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 183258 184244 . - . ID=gene-D5F88_RS01000;Name=D5F88_RS01000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01000;old_locus_tag=D5F88_01000 NZ_QYTI01000001.1 Protein Homology CDS 183258 184244 . - 0 ID=cds-WP_000104359.1;Parent=gene-D5F88_RS01000;Dbxref=GenBank:WP_000104359.1;Name=WP_000104359.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017284954.1;locus_tag=D5F88_RS01000;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000104359.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 184426 185514 . + . ID=gene-D5F88_RS01010;Name=D5F88_RS01010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01010;old_locus_tag=D5F88_01010 NZ_QYTI01000001.1 Protein Homology CDS 184426 185514 . + 0 ID=cds-WP_000017575.1;Parent=gene-D5F88_RS01010;Dbxref=GenBank:WP_000017575.1;Name=WP_000017575.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631737.1;locus_tag=D5F88_RS01010;product=ABC transporter permease;protein_id=WP_000017575.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 185514 186200 . + . ID=gene-D5F88_RS01015;Name=D5F88_RS01015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01015;old_locus_tag=D5F88_01015 NZ_QYTI01000001.1 Protein Homology CDS 185514 186200 . + 0 ID=cds-WP_001274148.1;Parent=gene-D5F88_RS01015;Dbxref=GenBank:WP_001274148.1;Name=WP_001274148.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480208.1;locus_tag=D5F88_RS01015;product=ABC transporter ATP-binding protein;protein_id=WP_001274148.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 186231 186902 . + . ID=gene-D5F88_RS01020;Name=D5F88_RS01020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01020;old_locus_tag=D5F88_01020 NZ_QYTI01000001.1 Protein Homology CDS 186231 186902 . + 0 ID=cds-WP_000590686.1;Parent=gene-D5F88_RS01020;Dbxref=GenBank:WP_000590686.1;Name=WP_000590686.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000590685.1;locus_tag=D5F88_RS01020;product=response regulator transcription factor;protein_id=WP_000590686.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 186886 187965 . + . ID=gene-D5F88_RS01025;Name=D5F88_RS01025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01025;old_locus_tag=D5F88_01025 NZ_QYTI01000001.1 Protein Homology CDS 186886 187965 . + 0 ID=cds-WP_180383421.1;Parent=gene-D5F88_RS01025;Dbxref=GenBank:WP_180383421.1;Name=WP_180383421.1;Ontology_term=GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771001.1;locus_tag=D5F88_RS01025;product=sensor histidine kinase;protein_id=WP_180383421.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 188119 189309 . + . ID=gene-D5F88_RS01030;Name=D5F88_RS01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01030;old_locus_tag=D5F88_01030 NZ_QYTI01000001.1 Protein Homology CDS 188119 189309 . + 0 ID=cds-WP_016502414.1;Parent=gene-D5F88_RS01030;Dbxref=GenBank:WP_016502414.1;Name=WP_016502414.1;Ontology_term=GO:0006526,GO:0004055,GO:0005524;gbkey=CDS;go_function=argininosuccinate synthase activity|0004055||IEA,ATP binding|0005524||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000514054.1;locus_tag=D5F88_RS01030;product=argininosuccinate synthase;protein_id=WP_016502414.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 189328 190716 . + . ID=gene-D5F88_RS01035;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=D5F88_RS01035;old_locus_tag=D5F88_01035 NZ_QYTI01000001.1 Protein Homology CDS 189328 190716 . + 0 ID=cds-WP_000164581.1;Parent=gene-D5F88_RS01035;Dbxref=GenBank:WP_000164581.1;Name=WP_000164581.1;Ontology_term=GO:0042450,GO:0004056;gbkey=CDS;gene=argH;go_function=argininosuccinate lyase activity|0004056||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771691.1;locus_tag=D5F88_RS01035;product=argininosuccinate lyase;protein_id=WP_000164581.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 190857 191738 . + . ID=gene-D5F88_RS01040;Name=D5F88_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01040;old_locus_tag=D5F88_01040 NZ_QYTI01000001.1 Protein Homology CDS 190857 191738 . + 0 ID=cds-WP_001018987.1;Parent=gene-D5F88_RS01040;Dbxref=GenBank:WP_001018987.1;Name=WP_001018987.1;Ontology_term=GO:0006096,GO:0004332;gbkey=CDS;go_function=fructose-bisphosphate aldolase activity|0004332||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011184946.1;locus_tag=D5F88_RS01040;product=class II fructose-bisphosphate aldolase;protein_id=WP_001018987.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 191823 192740 . - . ID=gene-D5F88_RS01045;Name=D5F88_RS01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01045;old_locus_tag=D5F88_01045 NZ_QYTI01000001.1 Protein Homology CDS 191823 192740 . - 0 ID=cds-WP_000197048.1;Parent=gene-D5F88_RS01045;Dbxref=GenBank:WP_000197048.1;Name=WP_000197048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000197052.1;locus_tag=D5F88_RS01045;product=L-lactate dehydrogenase;protein_id=WP_000197048.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 192979 193167 . + . ID=gene-D5F88_RS01050;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=D5F88_RS01050;old_locus_tag=D5F88_01050 NZ_QYTI01000001.1 Protein Homology CDS 192979 193167 . + 0 ID=cds-WP_001140949.1;Parent=gene-D5F88_RS01050;Dbxref=GenBank:WP_001140949.1;Name=WP_001140949.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmB;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008536053.1;locus_tag=D5F88_RS01050;product=50S ribosomal protein L28;protein_id=WP_001140949.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 193299 193664 . + . ID=gene-D5F88_RS01055;Name=D5F88_RS01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01055;old_locus_tag=D5F88_01055 NZ_QYTI01000001.1 Protein Homology CDS 193299 193664 . + 0 ID=cds-WP_000216444.1;Parent=gene-D5F88_RS01055;Dbxref=GenBank:WP_000216444.1;Name=WP_000216444.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018365170.1;locus_tag=D5F88_RS01055;product=Asp23/Gls24 family envelope stress response protein;protein_id=WP_000216444.1;transl_table=11 NZ_QYTI01000001.1 RefSeq gene 193664 195328 . + . ID=gene-D5F88_RS01060;Name=D5F88_RS01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01060;old_locus_tag=D5F88_01060 NZ_QYTI01000001.1 Protein Homology CDS 193664 195328 . + 0 ID=cds-WP_000036700.1;Parent=gene-D5F88_RS01060;Dbxref=GenBank:WP_000036700.1;Name=WP_000036700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000036699.1;locus_tag=D5F88_RS01060;product=DAK2 domain-containing protein;protein_id=WP_000036700.1;transl_table=11 ##sequence-region NZ_QYTI01000010.1 1 14956 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000010.1 RefSeq region 1 14956 . + . ID=NZ_QYTI01000010.1:1..14956;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000010.1 RefSeq pseudogene 1 231 . + . ID=gene-D5F88_RS01865;Name=D5F88_RS01865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS01865;old_locus_tag=D5F88_01870;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000010.1 Protein Homology CDS 1 231 . + 0 ID=cds-D5F88_RS01865;Parent=gene-D5F88_RS01865;Note=catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000886194.1;locus_tag=D5F88_RS01865;partial=true;product=serine--tRNA ligase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 277 909 . - . ID=gene-D5F88_RS01870;Name=D5F88_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01870;old_locus_tag=D5F88_01875 NZ_QYTI01000010.1 Protein Homology CDS 277 909 . - 0 ID=cds-WP_000284172.1;Parent=gene-D5F88_RS01870;Dbxref=GenBank:WP_000284172.1;Name=WP_000284172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000284161.1;locus_tag=D5F88_RS01870;product=HI_0552 family protein;protein_id=WP_000284172.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 1377 2150 . - . ID=gene-D5F88_RS01875;Name=D5F88_RS01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01875;old_locus_tag=D5F88_01880 NZ_QYTI01000010.1 Protein Homology CDS 1377 2150 . - 0 ID=cds-WP_001058274.1;Parent=gene-D5F88_RS01875;Dbxref=GenBank:WP_001058274.1;Name=WP_001058274.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001058273.1;locus_tag=D5F88_RS01875;product=acetyl-CoA carboxylase carboxyl transferase subunit alpha;protein_id=WP_001058274.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 2143 3018 . - . ID=gene-D5F88_RS01880;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=D5F88_RS01880;old_locus_tag=D5F88_01885 NZ_QYTI01000010.1 Protein Homology CDS 2143 3018 . - 0 ID=cds-WP_001173385.1;Parent=gene-D5F88_RS01880;Dbxref=GenBank:WP_001173385.1;Name=WP_001173385.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accD;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480323.1;locus_tag=D5F88_RS01880;product=acetyl-CoA carboxylase%2C carboxyltransferase subunit beta;protein_id=WP_001173385.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 3027 4397 . - . ID=gene-D5F88_RS01885;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=D5F88_RS01885;old_locus_tag=D5F88_01890 NZ_QYTI01000010.1 Protein Homology CDS 3027 4397 . - 0 ID=cds-WP_086163228.1;Parent=gene-D5F88_RS01885;Dbxref=GenBank:WP_086163228.1;Name=WP_086163228.1;Ontology_term=GO:0004075,GO:0016874,GO:0009317;gbkey=CDS;gene=accC;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=biotin carboxylase activity|0004075||IEA,ligase activity|0016874||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000473508.1;locus_tag=D5F88_RS01885;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_086163228.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 4435 4857 . - . ID=gene-D5F88_RS01890;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=D5F88_RS01890;old_locus_tag=D5F88_01895 NZ_QYTI01000010.1 Protein Homology CDS 4435 4857 . - 0 ID=cds-WP_000565430.1;Parent=gene-D5F88_RS01890;Dbxref=GenBank:WP_000565430.1;Name=WP_000565430.1;Ontology_term=GO:0006633,GO:0016836,GO:0019171;gbkey=CDS;gene=fabZ;go_function=hydro-lyase activity|0016836||IEA,(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|0019171||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000565430.1;locus_tag=D5F88_RS01890;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_000565430.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 4854 5354 . - . ID=gene-D5F88_RS01895;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=D5F88_RS01895;old_locus_tag=D5F88_01900 NZ_QYTI01000010.1 Protein Homology CDS 4854 5354 . - 0 ID=cds-WP_000354298.1;Parent=gene-D5F88_RS01895;Dbxref=GenBank:WP_000354298.1;Name=WP_000354298.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accB;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000354298.1;locus_tag=D5F88_RS01895;product=acetyl-CoA carboxylase biotin carboxyl carrier protein;protein_id=WP_000354298.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 5356 6588 . - . ID=gene-D5F88_RS01900;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=D5F88_RS01900;old_locus_tag=D5F88_01905 NZ_QYTI01000010.1 Protein Homology CDS 5356 6588 . - 0 ID=cds-WP_016502527.1;Parent=gene-D5F88_RS01900;Dbxref=GenBank:WP_016502527.1;Name=WP_016502527.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012679081.1;locus_tag=D5F88_RS01900;product=beta-ketoacyl-ACP synthase II;protein_id=WP_016502527.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 6604 7338 . - . ID=gene-D5F88_RS01905;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=D5F88_RS01905;old_locus_tag=D5F88_01910 NZ_QYTI01000010.1 Protein Homology CDS 6604 7338 . - 0 ID=cds-WP_086163227.1;Parent=gene-D5F88_RS01905;Dbxref=GenBank:WP_086163227.1;Name=WP_086163227.1;Ontology_term=GO:0006633,GO:0004316,GO:0051287;gbkey=CDS;gene=fabG;go_function=3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|0004316||IEA,NAD binding|0051287||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771521.1;locus_tag=D5F88_RS01905;product=3-oxoacyl-[acyl-carrier-protein] reductase;protein_id=WP_086163227.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 7347 8273 . - . ID=gene-D5F88_RS01910;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=D5F88_RS01910;old_locus_tag=D5F88_01915 NZ_QYTI01000010.1 Protein Homology CDS 7347 8273 . - 0 ID=cds-WP_016502525.1;Parent=gene-D5F88_RS01910;Dbxref=GenBank:WP_016502525.1;Name=WP_016502525.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058362.1;locus_tag=D5F88_RS01910;product=ACP S-malonyltransferase;protein_id=WP_016502525.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 8293 9252 . - . ID=gene-D5F88_RS01915;Name=fabK;gbkey=Gene;gene=fabK;gene_biotype=protein_coding;locus_tag=D5F88_RS01915;old_locus_tag=D5F88_01920 NZ_QYTI01000010.1 Protein Homology CDS 8293 9252 . - 0 ID=cds-WP_016502524.1;Parent=gene-D5F88_RS01915;Dbxref=GenBank:WP_016502524.1;Name=WP_016502524.1;Ontology_term=GO:0018580;gbkey=CDS;gene=fabK;go_function=nitronate monooxygenase activity|0018580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000857470.1;locus_tag=D5F88_RS01915;product=enoyl-[acyl-carrier-protein] reductase FabK;protein_id=WP_016502524.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 9406 9630 . - . ID=gene-D5F88_RS01920;Name=D5F88_RS01920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01920;old_locus_tag=D5F88_01925 NZ_QYTI01000010.1 Protein Homology CDS 9406 9630 . - 0 ID=cds-WP_000257836.1;Parent=gene-D5F88_RS01920;Dbxref=GenBank:WP_000257836.1;Name=WP_000257836.1;Ontology_term=GO:0006633,GO:0009245,GO:0000035,GO:0000036;gbkey=CDS;go_function=acyl binding|0000035||IEA,acyl carrier activity|0000036||IEA;go_process=fatty acid biosynthetic process|0006633||IEA,lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002938891.1;locus_tag=D5F88_RS01920;product=acyl carrier protein;protein_id=WP_000257836.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 9688 10659 . - . ID=gene-D5F88_RS01925;Name=D5F88_RS01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01925;old_locus_tag=D5F88_01930 NZ_QYTI01000010.1 Protein Homology CDS 9688 10659 . - 0 ID=cds-WP_000230690.1;Parent=gene-D5F88_RS01925;Dbxref=GenBank:WP_000230690.1;Name=WP_000230690.1;Ontology_term=GO:0006633,GO:0004315,GO:0016746,GO:0033818;gbkey=CDS;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA,acyltransferase activity|0016746||IEA,beta-ketoacyl-acyl-carrier-protein synthase III activity|0033818||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000230695.1;locus_tag=D5F88_RS01925;product=beta-ketoacyl-ACP synthase III;protein_id=WP_000230690.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 10659 11093 . - . ID=gene-D5F88_RS01930;Name=fabT;gbkey=Gene;gene=fabT;gene_biotype=protein_coding;locus_tag=D5F88_RS01930;old_locus_tag=D5F88_01935 NZ_QYTI01000010.1 Protein Homology CDS 10659 11093 . - 0 ID=cds-WP_000455488.1;Parent=gene-D5F88_RS01930;Dbxref=GenBank:WP_000455488.1;Name=WP_000455488.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=fabT;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000455488.1;locus_tag=D5F88_RS01930;product=fatty acid biosynthesis transcriptional regulator FabT;protein_id=WP_000455488.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 11189 11980 . - . ID=gene-D5F88_RS01935;Name=D5F88_RS01935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01935;old_locus_tag=D5F88_01940 NZ_QYTI01000010.1 Protein Homology CDS 11189 11980 . - 0 ID=cds-WP_016502522.1;Parent=gene-D5F88_RS01935;Dbxref=GenBank:WP_016502522.1;Name=WP_016502522.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000667362.1;locus_tag=D5F88_RS01935;product=enoyl-CoA hydratase;protein_id=WP_016502522.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 12117 12767 . - . ID=gene-D5F88_RS01945;Name=D5F88_RS01945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01945;old_locus_tag=D5F88_01950 NZ_QYTI01000010.1 Protein Homology CDS 12117 12767 . - 0 ID=cds-WP_000335411.1;Parent=gene-D5F88_RS01945;Dbxref=GenBank:WP_000335411.1;Name=WP_000335411.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001900118.1;locus_tag=D5F88_RS01945;product=HAD family hydrolase;protein_id=WP_000335411.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 12861 14213 . + . ID=gene-D5F88_RS01950;Name=D5F88_RS01950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01950;old_locus_tag=D5F88_01955 NZ_QYTI01000010.1 Protein Homology CDS 12861 14213 . + 0 ID=cds-WP_086163226.1;Parent=gene-D5F88_RS01950;Dbxref=GenBank:WP_086163226.1;Name=WP_086163226.1;Ontology_term=GO:0009089,GO:0004072;gbkey=CDS;go_function=aspartate kinase activity|0004072||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480318.1;locus_tag=D5F88_RS01950;product=aspartate kinase;protein_id=WP_086163226.1;transl_table=11 NZ_QYTI01000010.1 RefSeq gene 14430 14503 . - . ID=gene-D5F88_RS01955;Name=D5F88_RS01955;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01955;old_locus_tag=D5F88_01960 NZ_QYTI01000010.1 tRNAscan-SE tRNA 14430 14503 . - . ID=rna-D5F88_RS01955;Parent=gene-D5F88_RS01955;anticodon=(pos:complement(14467..14469));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01955;product=tRNA-Asn NZ_QYTI01000010.1 tRNAscan-SE exon 14430 14503 . - . ID=exon-D5F88_RS01955-1;Parent=rna-D5F88_RS01955;anticodon=(pos:complement(14467..14469));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01955;product=tRNA-Asn NZ_QYTI01000010.1 RefSeq gene 14509 14624 . - . ID=gene-D5F88_RS01960;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=D5F88_RS01960;old_locus_tag=D5F88_01965 NZ_QYTI01000010.1 cmsearch rRNA 14509 14624 . - . ID=rna-D5F88_RS01960;Parent=gene-D5F88_RS01960;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01960;product=5S ribosomal RNA NZ_QYTI01000010.1 cmsearch exon 14509 14624 . - . ID=exon-D5F88_RS01960-1;Parent=rna-D5F88_RS01960;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01960;product=5S ribosomal RNA NZ_QYTI01000010.1 RefSeq gene 14699 14956 . - . ID=gene-D5F88_RS01965;Name=D5F88_RS01965;end_range=14956,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS01965;old_locus_tag=D5F88_01970;partial=true NZ_QYTI01000010.1 cmsearch rRNA 14699 14956 . - . ID=rna-D5F88_RS01965;Parent=gene-D5F88_RS01965;Dbxref=RFAM:RF02541;end_range=14956,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01965;partial=true;product=23S ribosomal RNA NZ_QYTI01000010.1 cmsearch exon 14699 14956 . - . ID=exon-D5F88_RS01965-1;Parent=rna-D5F88_RS01965;Dbxref=RFAM:RF02541;end_range=14956,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01965;partial=true;product=23S ribosomal RNA ##sequence-region NZ_QYTI01000100.1 1 3664 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000100.1 RefSeq region 1 3664 . + . ID=NZ_QYTI01000100.1:1..3664;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000100.1 RefSeq gene 1 240 . - . ID=gene-D5F88_RS11575;Name=D5F88_RS11575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11575;old_locus_tag=D5F88_11585;partial=true;start_range=.,1 NZ_QYTI01000100.1 Protein Homology CDS 1 240 . - 0 ID=cds-WP_142997452.1;Parent=gene-D5F88_RS11575;Dbxref=GenBank:WP_142997452.1;Name=WP_142997452.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS11575;partial=true;product=transposase;protein_id=WP_142997452.1;start_range=.,1;transl_table=11 NZ_QYTI01000100.1 RefSeq pseudogene 322 624 . + . ID=gene-D5F88_RS11580;Name=D5F88_RS11580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11580;old_locus_tag=D5F88_11590;partial=true;pseudo=true;start_range=.,322 NZ_QYTI01000100.1 Protein Homology CDS 322 624 . + 0 ID=cds-D5F88_RS11580;Parent=gene-D5F88_RS11580;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643540.1;locus_tag=D5F88_RS11580;partial=true;product=ISLre2 family transposase;pseudo=true;start_range=.,322;transl_table=11 NZ_QYTI01000100.1 RefSeq gene 1175 2062 . + . ID=gene-D5F88_RS11585;Name=D5F88_RS11585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11585;old_locus_tag=D5F88_11595 NZ_QYTI01000100.1 Protein Homology CDS 1175 2062 . + 0 ID=cds-WP_016502728.1;Parent=gene-D5F88_RS11585;Dbxref=GenBank:WP_016502728.1;Name=WP_016502728.1;Ontology_term=GO:0071586,GO:0004222,GO:0070007,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,glutamic-type endopeptidase activity|0070007||IEA;go_process=CAAX-box protein processing|0071586||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003049649.1;locus_tag=D5F88_RS11585;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_016502728.1;transl_table=11 NZ_QYTI01000100.1 RefSeq gene 2260 2991 . + . ID=gene-D5F88_RS11590;Name=D5F88_RS11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11590;old_locus_tag=D5F88_11600 NZ_QYTI01000100.1 Protein Homology CDS 2260 2991 . + 0 ID=cds-WP_016502727.1;Parent=gene-D5F88_RS11590;Dbxref=GenBank:WP_016502727.1;Name=WP_016502727.1;Ontology_term=GO:0071586,GO:0004222,GO:0070007,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,glutamic-type endopeptidase activity|0070007||IEA;go_process=CAAX-box protein processing|0071586||IEA;inference=COORDINATES: protein motif:HMM:NF014566.6;locus_tag=D5F88_RS11590;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_016502727.1;transl_table=11 NZ_QYTI01000100.1 RefSeq gene 3315 3664 . - . ID=gene-D5F88_RS11595;Name=D5F88_RS11595;end_range=3664,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11595;old_locus_tag=D5F88_11605;partial=true NZ_QYTI01000100.1 Protein Homology CDS 3315 3664 . - 2 ID=cds-WP_142997422.1;Parent=gene-D5F88_RS11595;Dbxref=GenBank:WP_142997422.1;Name=WP_142997422.1;Ontology_term=GO:0015074;end_range=3664,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS11595;partial=true;product=integrase core domain-containing protein;protein_id=WP_142997422.1;transl_table=11 ##sequence-region NZ_QYTI01000101.1 1 966 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000101.1 RefSeq region 1 966 . + . ID=NZ_QYTI01000101.1:1..966;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000101.1 RefSeq pseudogene 431 874 . + . ID=gene-D5F88_RS11870;Name=D5F88_RS11870;end_range=874,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11870;partial=true;pseudo=true NZ_QYTI01000101.1 Protein Homology CDS 431 874 . + 0 ID=cds-D5F88_RS11870;Parent=gene-D5F88_RS11870;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=874,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001037495.1;locus_tag=D5F88_RS11870;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000011.1 1 9763 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000011.1 RefSeq region 1 9763 . + . ID=NZ_QYTI01000011.1:1..9763;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000011.1 RefSeq gene 1 260 . - . ID=gene-D5F88_RS01970;Name=D5F88_RS01970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01970;old_locus_tag=D5F88_01975;partial=true;start_range=.,1 NZ_QYTI01000011.1 Protein Homology CDS 1 260 . - 0 ID=cds-WP_260424967.1;Parent=gene-D5F88_RS01970;Dbxref=GenBank:WP_260424967.1;Name=WP_260424967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480566.1;locus_tag=D5F88_RS01970;partial=true;product=hypothetical protein;protein_id=WP_260424967.1;start_range=.,1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 490 672 . - . ID=gene-D5F88_RS01975;Name=D5F88_RS01975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01975;old_locus_tag=D5F88_01980 NZ_QYTI01000011.1 GeneMarkS-2+ CDS 490 672 . - 0 ID=cds-WP_011889039.1;Parent=gene-D5F88_RS01975;Dbxref=GenBank:WP_011889039.1;Name=WP_011889039.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS01975;product=hypothetical protein;protein_id=WP_011889039.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 745 942 . + . ID=gene-D5F88_RS01980;Name=D5F88_RS01980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01980;old_locus_tag=D5F88_01985 NZ_QYTI01000011.1 Protein Homology CDS 745 942 . + 0 ID=cds-WP_000165789.1;Parent=gene-D5F88_RS01980;Dbxref=GenBank:WP_000165789.1;Name=WP_000165789.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000165789.1;locus_tag=D5F88_RS01980;product=helix-turn-helix transcriptional regulator;protein_id=WP_000165789.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 992 1717 . + . ID=gene-D5F88_RS01985;Name=D5F88_RS01985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01985;old_locus_tag=D5F88_01990 NZ_QYTI01000011.1 Protein Homology CDS 992 1717 . + 0 ID=cds-WP_124773171.1;Parent=gene-D5F88_RS01985;Dbxref=GenBank:WP_124773171.1;Name=WP_124773171.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001072522.1;locus_tag=D5F88_RS01985;product=phage antirepressor KilAC domain-containing protein;protein_id=WP_124773171.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 1760 2110 . + . ID=gene-D5F88_RS11780;Name=D5F88_RS11780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11780 NZ_QYTI01000011.1 Protein Homology CDS 1760 2110 . + 0 ID=cds-WP_260424731.1;Parent=gene-D5F88_RS11780;Dbxref=GenBank:WP_260424731.1;Name=WP_260424731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012560978.1;locus_tag=D5F88_RS11780;product=hypothetical protein;protein_id=WP_260424731.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 2085 2399 . - . ID=gene-D5F88_RS01995;Name=D5F88_RS01995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01995;old_locus_tag=D5F88_02000 NZ_QYTI01000011.1 GeneMarkS-2+ CDS 2085 2399 . - 0 ID=cds-WP_124749024.1;Parent=gene-D5F88_RS01995;Dbxref=GenBank:WP_124749024.1;Name=WP_124749024.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS01995;product=hypothetical protein;protein_id=WP_124749024.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 2569 2754 . + . ID=gene-D5F88_RS02000;Name=D5F88_RS02000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02000;old_locus_tag=D5F88_02005 NZ_QYTI01000011.1 Protein Homology CDS 2569 2754 . + 0 ID=cds-WP_124759132.1;Parent=gene-D5F88_RS02000;Dbxref=GenBank:WP_124759132.1;Name=WP_124759132.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000263688.1;locus_tag=D5F88_RS02000;product=helix-turn-helix domain-containing protein;protein_id=WP_124759132.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 2833 3123 . + . ID=gene-D5F88_RS02005;Name=D5F88_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02005;old_locus_tag=D5F88_02010 NZ_QYTI01000011.1 Protein Homology CDS 2833 3123 . + 0 ID=cds-WP_000963485.1;Parent=gene-D5F88_RS02005;Dbxref=GenBank:WP_000963485.1;Name=WP_000963485.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000963484.1;locus_tag=D5F88_RS02005;product=MerR family transcriptional regulator;protein_id=WP_000963485.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 3125 3349 . + . ID=gene-D5F88_RS02010;Name=D5F88_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02010;old_locus_tag=D5F88_02015 NZ_QYTI01000011.1 Protein Homology CDS 3125 3349 . + 0 ID=cds-WP_124773173.1;Parent=gene-D5F88_RS02010;Dbxref=GenBank:WP_124773173.1;Name=WP_124773173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000431163.1;locus_tag=D5F88_RS02010;product=hypothetical protein;protein_id=WP_124773173.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 3383 4006 . + . ID=gene-D5F88_RS02015;Name=D5F88_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02015;old_locus_tag=D5F88_02020 NZ_QYTI01000011.1 Protein Homology CDS 3383 4006 . + 0 ID=cds-WP_124773175.1;Parent=gene-D5F88_RS02015;Dbxref=GenBank:WP_124773175.1;Name=WP_124773175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018368342.1;locus_tag=D5F88_RS02015;product=polymer-forming cytoskeletal protein;protein_id=WP_124773175.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 3999 4280 . + . ID=gene-D5F88_RS02020;Name=D5F88_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02020;old_locus_tag=D5F88_02025 NZ_QYTI01000011.1 Protein Homology CDS 3999 4280 . + 0 ID=cds-WP_124773177.1;Parent=gene-D5F88_RS02020;Dbxref=GenBank:WP_124773177.1;Name=WP_124773177.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF024835.6;locus_tag=D5F88_RS02020;product=helix-turn-helix domain-containing protein;protein_id=WP_124773177.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 4296 5195 . + . ID=gene-D5F88_RS02025;Name=D5F88_RS02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02025;old_locus_tag=D5F88_02030 NZ_QYTI01000011.1 Protein Homology CDS 4296 5195 . + 0 ID=cds-WP_124773179.1;Parent=gene-D5F88_RS02025;Dbxref=GenBank:WP_124773179.1;Name=WP_124773179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647213.1;locus_tag=D5F88_RS02025;product=conserved phage C-terminal domain-containing protein;protein_id=WP_124773179.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 5205 6047 . + . ID=gene-D5F88_RS02030;Name=D5F88_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02030;old_locus_tag=D5F88_02035 NZ_QYTI01000011.1 Protein Homology CDS 5205 6047 . + 0 ID=cds-WP_124773181.1;Parent=gene-D5F88_RS02030;Dbxref=GenBank:WP_124773181.1;Name=WP_124773181.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000863936.1;locus_tag=D5F88_RS02030;product=ATP-binding protein;protein_id=WP_124773181.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 6047 6190 . + . ID=gene-D5F88_RS11635;Name=D5F88_RS11635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11635 NZ_QYTI01000011.1 Protein Homology CDS 6047 6190 . + 0 ID=cds-WP_185696278.1;Parent=gene-D5F88_RS11635;Dbxref=GenBank:WP_185696278.1;Name=WP_185696278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643875.1;locus_tag=D5F88_RS11635;product=hypothetical protein;protein_id=WP_185696278.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 6183 6458 . + . ID=gene-D5F88_RS02035;Name=D5F88_RS02035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02035;old_locus_tag=D5F88_02040 NZ_QYTI01000011.1 Protein Homology CDS 6183 6458 . + 0 ID=cds-WP_124759469.1;Parent=gene-D5F88_RS02035;Dbxref=GenBank:WP_124759469.1;Name=WP_124759469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643874.1;locus_tag=D5F88_RS02035;product=hypothetical protein;protein_id=WP_124759469.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 6445 6699 . + . ID=gene-D5F88_RS02040;Name=D5F88_RS02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02040;old_locus_tag=D5F88_02045 NZ_QYTI01000011.1 Protein Homology CDS 6445 6699 . + 0 ID=cds-WP_124749040.1;Parent=gene-D5F88_RS02040;Dbxref=GenBank:WP_124749040.1;Name=WP_124749040.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008088460.1;locus_tag=D5F88_RS02040;product=hypothetical protein;protein_id=WP_124749040.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 6702 6863 . + . ID=gene-D5F88_RS02045;Name=D5F88_RS02045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02045;old_locus_tag=D5F88_02050 NZ_QYTI01000011.1 Protein Homology CDS 6702 6863 . + 0 ID=cds-WP_124773183.1;Parent=gene-D5F88_RS02045;Dbxref=GenBank:WP_124773183.1;Name=WP_124773183.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001288191.1;locus_tag=D5F88_RS02045;product=hypothetical protein;protein_id=WP_124773183.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 6864 7817 . + . ID=gene-D5F88_RS02050;Name=D5F88_RS02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02050;old_locus_tag=D5F88_02055 NZ_QYTI01000011.1 Protein Homology CDS 6864 7817 . + 0 ID=cds-WP_124773185.1;Parent=gene-D5F88_RS02050;Dbxref=GenBank:WP_124773185.1;Name=WP_124773185.1;Ontology_term=GO:0006310,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000064172.1;locus_tag=D5F88_RS02050;product=recombinase RecT;protein_id=WP_124773185.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 7814 8611 . + . ID=gene-D5F88_RS02055;Name=D5F88_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02055;old_locus_tag=D5F88_02060 NZ_QYTI01000011.1 Protein Homology CDS 7814 8611 . + 0 ID=cds-WP_124773187.1;Parent=gene-D5F88_RS02055;Dbxref=GenBank:WP_124773187.1;Name=WP_124773187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054699.1;locus_tag=D5F88_RS02055;product=PD-(D/E)XK nuclease-like domain-containing protein;protein_id=WP_124773187.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 8774 8971 . + . ID=gene-D5F88_RS02060;Name=D5F88_RS02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02060;old_locus_tag=D5F88_02065 NZ_QYTI01000011.1 Protein Homology CDS 8774 8971 . + 0 ID=cds-WP_124773189.1;Parent=gene-D5F88_RS02060;Dbxref=GenBank:WP_124773189.1;Name=WP_124773189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647220.1;locus_tag=D5F88_RS02060;product=hypothetical protein;protein_id=WP_124773189.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 8961 9437 . + . ID=gene-D5F88_RS02065;Name=D5F88_RS02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02065;old_locus_tag=D5F88_02070 NZ_QYTI01000011.1 Protein Homology CDS 8961 9437 . + 0 ID=cds-WP_124773191.1;Parent=gene-D5F88_RS02065;Dbxref=GenBank:WP_124773191.1;Name=WP_124773191.1;Ontology_term=GO:0006281,GO:0006310,GO:0000287,GO:0000400,GO:0008821;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,four-way junction DNA binding|0000400||IEA,crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768474.1;locus_tag=D5F88_RS02065;product=RusA family crossover junction endodeoxyribonuclease;protein_id=WP_124773191.1;transl_table=11 NZ_QYTI01000011.1 RefSeq gene 9427 9763 . + . ID=gene-D5F88_RS02070;Name=D5F88_RS02070;end_range=9763,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02070;old_locus_tag=D5F88_02075;partial=true NZ_QYTI01000011.1 Protein Homology CDS 9427 9763 . + 0 ID=cds-WP_124773193.1;Parent=gene-D5F88_RS02070;Dbxref=GenBank:WP_124773193.1;Name=WP_124773193.1;end_range=9763,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000129025.1;locus_tag=D5F88_RS02070;partial=true;product=hypothetical protein;protein_id=WP_124773193.1;transl_table=11 ##sequence-region NZ_QYTI01000012.1 1 14822 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000012.1 RefSeq region 1 14822 . + . ID=NZ_QYTI01000012.1:1..14822;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000012.1 RefSeq pseudogene 1 437 . - . ID=gene-D5F88_RS02075;Name=D5F88_RS02075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02075;old_locus_tag=D5F88_02080;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000012.1 Protein Homology CDS 1 437 . - 0 ID=cds-D5F88_RS02075;Parent=gene-D5F88_RS02075;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647570.1;locus_tag=D5F88_RS02075;partial=true;product=phage tail protein;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 428 1951 . - . ID=gene-D5F88_RS02080;Name=D5F88_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02080;old_locus_tag=D5F88_02085 NZ_QYTI01000012.1 Protein Homology CDS 428 1951 . - 0 ID=cds-WP_124773197.1;Parent=gene-D5F88_RS02080;Dbxref=GenBank:WP_124773197.1;Name=WP_124773197.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000668942.1;locus_tag=D5F88_RS02080;product=distal tail protein Dit;protein_id=WP_124773197.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 1948 5946 . - . ID=gene-D5F88_RS02085;Name=D5F88_RS02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02085;old_locus_tag=D5F88_02090 NZ_QYTI01000012.1 Protein Homology CDS 1948 5946 . - 0 ID=cds-WP_124773199.1;Parent=gene-D5F88_RS02085;Dbxref=GenBank:WP_124773199.1;Name=WP_124773199.1;Ontology_term=GO:0016032,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000526774.1;locus_tag=D5F88_RS02085;product=phage tail tape measure protein;protein_id=WP_124773199.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 5959 6126 . - . ID=gene-D5F88_RS11640;Name=D5F88_RS11640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11640 NZ_QYTI01000012.1 Protein Homology CDS 5959 6126 . - 0 ID=cds-WP_000264971.1;Parent=gene-D5F88_RS11640;Dbxref=GenBank:WP_000264971.1;Name=WP_000264971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002985341.1;locus_tag=D5F88_RS11640;product=hypothetical protein;protein_id=WP_000264971.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 6156 6476 . - . ID=gene-D5F88_RS02090;Name=gpG;gbkey=Gene;gene=gpG;gene_biotype=protein_coding;locus_tag=D5F88_RS02090;old_locus_tag=D5F88_02095 NZ_QYTI01000012.1 Protein Homology CDS 6156 6476 . - 0 ID=cds-WP_124759263.1;Parent=gene-D5F88_RS02090;Dbxref=GenBank:WP_124759263.1;Name=WP_124759263.1;gbkey=CDS;gene=gpG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014411857.1;locus_tag=D5F88_RS02090;product=phage tail assembly chaperone G;protein_id=WP_124759263.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 6535 7131 . - . ID=gene-D5F88_RS02095;Name=D5F88_RS02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02095;old_locus_tag=D5F88_02100 NZ_QYTI01000012.1 Protein Homology CDS 6535 7131 . - 0 ID=cds-WP_124759262.1;Parent=gene-D5F88_RS02095;Dbxref=GenBank:WP_124759262.1;Name=WP_124759262.1;Ontology_term=GO:0019068,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285217.1;locus_tag=D5F88_RS02095;product=major tail protein;protein_id=WP_124759262.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 7147 7572 . - . ID=gene-D5F88_RS02100;Name=D5F88_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02100;old_locus_tag=D5F88_02105 NZ_QYTI01000012.1 Protein Homology CDS 7147 7572 . - 0 ID=cds-WP_124759261.1;Parent=gene-D5F88_RS02100;Dbxref=GenBank:WP_124759261.1;Name=WP_124759261.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285216.1;locus_tag=D5F88_RS02100;product=hypothetical protein;protein_id=WP_124759261.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 7569 7946 . - . ID=gene-D5F88_RS02105;Name=D5F88_RS02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02105;old_locus_tag=D5F88_02110 NZ_QYTI01000012.1 Protein Homology CDS 7569 7946 . - 0 ID=cds-WP_124773201.1;Parent=gene-D5F88_RS02105;Dbxref=GenBank:WP_124773201.1;Name=WP_124773201.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011184593.1;locus_tag=D5F88_RS02105;product=HK97-gp10 family putative phage morphogenesis protein;protein_id=WP_124773201.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 7943 8290 . - . ID=gene-D5F88_RS02110;Name=D5F88_RS02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02110;old_locus_tag=D5F88_02115 NZ_QYTI01000012.1 Protein Homology CDS 7943 8290 . - 0 ID=cds-WP_124749093.1;Parent=gene-D5F88_RS02110;Dbxref=GenBank:WP_124749093.1;Name=WP_124749093.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011017582.1;locus_tag=D5F88_RS02110;product=phage head closure protein;protein_id=WP_124749093.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 8287 8589 . - . ID=gene-D5F88_RS02115;Name=D5F88_RS02115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02115;old_locus_tag=D5F88_02120 NZ_QYTI01000012.1 Protein Homology CDS 8287 8589 . - 0 ID=cds-WP_124759260.1;Parent=gene-D5F88_RS02115;Dbxref=GenBank:WP_124759260.1;Name=WP_124759260.1;Ontology_term=GO:0016032;gbkey=CDS;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011017581.1;locus_tag=D5F88_RS02115;product=head-tail connector protein;protein_id=WP_124759260.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 8592 8720 . - . ID=gene-D5F88_RS11785;Name=D5F88_RS11785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11785 NZ_QYTI01000012.1 Protein Homology CDS 8592 8720 . - 0 ID=cds-WP_012679323.1;Parent=gene-D5F88_RS11785;Dbxref=GenBank:WP_012679323.1;Name=WP_012679323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002985355.1;locus_tag=D5F88_RS11785;product=hypothetical protein;protein_id=WP_012679323.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 8734 9918 . - . ID=gene-D5F88_RS02120;Name=D5F88_RS02120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02120;old_locus_tag=D5F88_02125 NZ_QYTI01000012.1 Protein Homology CDS 8734 9918 . - 0 ID=cds-WP_124773203.1;Parent=gene-D5F88_RS02120;Dbxref=GenBank:WP_124773203.1;Name=WP_124773203.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008087503.1;locus_tag=D5F88_RS02120;product=phage major capsid protein;protein_id=WP_124773203.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 9944 10609 . - . ID=gene-D5F88_RS02125;Name=D5F88_RS02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02125;old_locus_tag=D5F88_02130 NZ_QYTI01000012.1 Protein Homology CDS 9944 10609 . - 0 ID=cds-WP_124759258.1;Parent=gene-D5F88_RS02125;Dbxref=GenBank:WP_124759258.1;Name=WP_124759258.1;Ontology_term=GO:0046797,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=viral procapsid maturation|0046797||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001126086.1;locus_tag=D5F88_RS02125;product=head maturation protease%2C ClpP-related;protein_id=WP_124759258.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 10587 11807 . - . ID=gene-D5F88_RS02130;Name=D5F88_RS02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02130;old_locus_tag=D5F88_02135 NZ_QYTI01000012.1 Protein Homology CDS 10587 11807 . - 0 ID=cds-WP_000007729.1;Parent=gene-D5F88_RS02130;Dbxref=GenBank:WP_000007729.1;Name=WP_000007729.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000007730.1;locus_tag=D5F88_RS02130;product=phage portal protein;protein_id=WP_000007729.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 11837 12040 . - . ID=gene-D5F88_RS02135;Name=D5F88_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02135;old_locus_tag=D5F88_02140 NZ_QYTI01000012.1 Protein Homology CDS 11837 12040 . - 0 ID=cds-WP_070043697.1;Parent=gene-D5F88_RS02135;Dbxref=GenBank:WP_070043697.1;Name=WP_070043697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001042281.1;locus_tag=D5F88_RS02135;product=hypothetical protein;protein_id=WP_070043697.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 12033 12203 . - . ID=gene-D5F88_RS11645;Name=D5F88_RS11645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11645 NZ_QYTI01000012.1 Protein Homology CDS 12033 12203 . - 0 ID=cds-WP_176724793.1;Parent=gene-D5F88_RS11645;Dbxref=GenBank:WP_176724793.1;Name=WP_176724793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002985365.1;locus_tag=D5F88_RS11645;product=hypothetical protein;protein_id=WP_176724793.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 12200 13954 . - . ID=gene-D5F88_RS02140;Name=D5F88_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02140;old_locus_tag=D5F88_02145 NZ_QYTI01000012.1 Protein Homology CDS 12200 13954 . - 0 ID=cds-WP_124773205.1;Parent=gene-D5F88_RS02140;Dbxref=GenBank:WP_124773205.1;Name=WP_124773205.1;Ontology_term=GO:0004519,GO:0005524,GO:0140657;gbkey=CDS;go_function=endonuclease activity|0004519||IEA,ATP binding|0005524||IEA,ATP-dependent activity|0140657||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000151569.1;locus_tag=D5F88_RS02140;product=terminase large subunit;protein_id=WP_124773205.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 13969 14436 . - . ID=gene-D5F88_RS02145;Name=D5F88_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02145;old_locus_tag=D5F88_02150 NZ_QYTI01000012.1 Protein Homology CDS 13969 14436 . - 0 ID=cds-WP_124773207.1;Parent=gene-D5F88_RS02145;Dbxref=GenBank:WP_124773207.1;Name=WP_124773207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002985371.1;locus_tag=D5F88_RS02145;product=phage terminase small subunit P27 family;protein_id=WP_124773207.1;transl_table=11 NZ_QYTI01000012.1 RefSeq gene 14611 14822 . - . ID=gene-D5F88_RS02150;Name=D5F88_RS02150;end_range=14822,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02150;old_locus_tag=D5F88_02155;partial=true NZ_QYTI01000012.1 Protein Homology CDS 14611 14822 . - 2 ID=cds-WP_142997429.1;Parent=gene-D5F88_RS02150;Dbxref=GenBank:WP_142997429.1;Name=WP_142997429.1;Ontology_term=GO:0003676,GO:0004519,GO:0008270;end_range=14822,.;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001247766.1;locus_tag=D5F88_RS02150;partial=true;product=HNH endonuclease;protein_id=WP_142997429.1;transl_table=11 ##sequence-region NZ_QYTI01000013.1 1 2201 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000013.1 RefSeq region 1 2201 . + . ID=NZ_QYTI01000013.1:1..2201;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000013.1 RefSeq gene 1 2201 . - . ID=gene-D5F88_RS11790;Name=D5F88_RS11790;end_range=2201,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11790;partial=true;start_range=.,1 NZ_QYTI01000013.1 GeneMarkS-2+ CDS 1 2201 . - 1 ID=cds-WP_260424968.1;Parent=gene-D5F88_RS11790;Dbxref=GenBank:WP_260424968.1;Name=WP_260424968.1;end_range=2201,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS11790;partial=true;product=hypothetical protein;protein_id=WP_260424968.1;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000014.1 1 6341 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000014.1 RefSeq region 1 6341 . + . ID=NZ_QYTI01000014.1:1..6341;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000014.1 RefSeq gene 1 154 . - . ID=gene-D5F88_RS02160;Name=D5F88_RS02160;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS02160;old_locus_tag=D5F88_02165;partial=true;start_range=.,1 NZ_QYTI01000014.1 cmsearch rRNA 1 154 . - . ID=rna-D5F88_RS02160;Parent=gene-D5F88_RS02160;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS02160;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_QYTI01000014.1 cmsearch exon 1 154 . - . ID=exon-D5F88_RS02160-1;Parent=rna-D5F88_RS02160;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS02160;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_QYTI01000014.1 RefSeq gene 552 1484 . - . ID=gene-D5F88_RS02165;Name=D5F88_RS02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02165;old_locus_tag=D5F88_02170 NZ_QYTI01000014.1 Protein Homology CDS 552 1484 . - 0 ID=cds-WP_000138506.1;Parent=gene-D5F88_RS02165;Dbxref=GenBank:WP_000138506.1;Name=WP_000138506.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000138505.1;locus_tag=D5F88_RS02165;product=ABC transporter ATP-binding protein;protein_id=WP_000138506.1;transl_table=11 NZ_QYTI01000014.1 RefSeq gene 1484 2530 . - . ID=gene-D5F88_RS02170;Name=D5F88_RS02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02170;old_locus_tag=D5F88_02175 NZ_QYTI01000014.1 Protein Homology CDS 1484 2530 . - 0 ID=cds-WP_086163189.1;Parent=gene-D5F88_RS02170;Dbxref=GenBank:WP_086163189.1;Name=WP_086163189.1;Ontology_term=GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000410286.1;locus_tag=D5F88_RS02170;product=ABC transporter ATP-binding protein;protein_id=WP_086163189.1;transl_table=11 NZ_QYTI01000014.1 RefSeq gene 2543 3574 . - . ID=gene-D5F88_RS02175;Name=D5F88_RS02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02175;old_locus_tag=D5F88_02180 NZ_QYTI01000014.1 Protein Homology CDS 2543 3574 . - 0 ID=cds-WP_016480224.1;Parent=gene-D5F88_RS02175;Dbxref=GenBank:WP_016480224.1;Name=WP_016480224.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000764054.1;locus_tag=D5F88_RS02175;product=ABC transporter permease;protein_id=WP_016480224.1;transl_table=11 NZ_QYTI01000014.1 RefSeq gene 3584 4498 . - . ID=gene-D5F88_RS02180;Name=D5F88_RS02180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02180;old_locus_tag=D5F88_02185 NZ_QYTI01000014.1 Protein Homology CDS 3584 4498 . - 0 ID=cds-WP_000598964.1;Parent=gene-D5F88_RS02180;Dbxref=GenBank:WP_000598964.1;Name=WP_000598964.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000598968.1;locus_tag=D5F88_RS02180;product=ABC transporter permease;protein_id=WP_000598964.1;transl_table=11 NZ_QYTI01000014.1 RefSeq gene 4617 6272 . - . ID=gene-D5F88_RS02185;Name=D5F88_RS02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02185;old_locus_tag=D5F88_02190 NZ_QYTI01000014.1 Protein Homology CDS 4617 6272 . - 0 ID=cds-WP_086163188.1;Parent=gene-D5F88_RS02185;Dbxref=GenBank:WP_086163188.1;Name=WP_086163188.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644211.1;locus_tag=D5F88_RS02185;product=peptide ABC transporter substrate-binding protein;protein_id=WP_086163188.1;transl_table=11 ##sequence-region NZ_QYTI01000015.1 1 6319 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000015.1 RefSeq region 1 6319 . + . ID=NZ_QYTI01000015.1:1..6319;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000015.1 RefSeq pseudogene 11 1006 . + . ID=gene-D5F88_RS02190;Name=D5F88_RS02190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02190;old_locus_tag=D5F88_02195;partial=true;pseudo=true;start_range=.,11 NZ_QYTI01000015.1 Protein Homology CDS 11 1006 . + 0 ID=cds-D5F88_RS02190;Parent=gene-D5F88_RS02190;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009058,GO:0003824,GO:0030170;gbkey=CDS;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000171461.1;locus_tag=D5F88_RS02190;partial=true;product=pyridoxal phosphate-dependent aminotransferase;pseudo=true;start_range=.,11;transl_table=11 NZ_QYTI01000015.1 RefSeq gene 996 1757 . + . ID=gene-D5F88_RS02195;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=D5F88_RS02195;old_locus_tag=D5F88_02200 NZ_QYTI01000015.1 Protein Homology CDS 996 1757 . + 0 ID=cds-WP_001266269.1;Parent=gene-D5F88_RS02195;Dbxref=GenBank:WP_001266269.1;Name=WP_001266269.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649246.1;locus_tag=D5F88_RS02195;product=DNA repair protein RecO;protein_id=WP_001266269.1;transl_table=11 NZ_QYTI01000015.1 RefSeq gene 1820 2698 . + . ID=gene-D5F88_RS02200;Name=D5F88_RS02200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02200;old_locus_tag=D5F88_02205 NZ_QYTI01000015.1 Protein Homology CDS 1820 2698 . + 0 ID=cds-WP_000420132.1;Parent=gene-D5F88_RS02200;Dbxref=GenBank:WP_000420132.1;Name=WP_000420132.1;Ontology_term=GO:0071586,GO:0004222,GO:0070007,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,glutamic-type endopeptidase activity|0070007||IEA;go_process=CAAX-box protein processing|0071586||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420133.1;locus_tag=D5F88_RS02200;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_000420132.1;transl_table=11 NZ_QYTI01000015.1 RefSeq gene 2776 3768 . + . ID=gene-D5F88_RS02205;Name=plsX;gbkey=Gene;gene=plsX;gene_biotype=protein_coding;locus_tag=D5F88_RS02205;old_locus_tag=D5F88_02210 NZ_QYTI01000015.1 Protein Homology CDS 2776 3768 . + 0 ID=cds-WP_000717415.1;Parent=gene-D5F88_RS02205;Dbxref=GenBank:WP_000717415.1;Name=WP_000717415.1;Ontology_term=GO:0008610,GO:0043811;gbkey=CDS;gene=plsX;go_function=phosphate:acyl-[acyl carrier protein] acyltransferase activity|0043811||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000716823.1;locus_tag=D5F88_RS02205;product=phosphate acyltransferase PlsX;protein_id=WP_000717415.1;transl_table=11 NZ_QYTI01000015.1 RefSeq gene 3779 4018 . + . ID=gene-D5F88_RS02210;Name=D5F88_RS02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02210;old_locus_tag=D5F88_02215 NZ_QYTI01000015.1 Protein Homology CDS 3779 4018 . + 0 ID=cds-WP_000085641.1;Parent=gene-D5F88_RS02210;Dbxref=GenBank:WP_000085641.1;Name=WP_000085641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000085641.1;locus_tag=D5F88_RS02210;product=phosphopantetheine-binding protein;protein_id=WP_000085641.1;transl_table=11 NZ_QYTI01000015.1 RefSeq gene 4142 4846 . + . ID=gene-D5F88_RS02215;Name=purC;gbkey=Gene;gene=purC;gene_biotype=protein_coding;locus_tag=D5F88_RS02215;old_locus_tag=D5F88_02220 NZ_QYTI01000015.1 Protein Homology CDS 4142 4846 . + 0 ID=cds-WP_016480151.1;Parent=gene-D5F88_RS02215;Dbxref=GenBank:WP_016480151.1;Name=WP_016480151.1;Ontology_term=GO:0006164,GO:0004639;gbkey=CDS;gene=purC;go_function=phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|0004639||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648569.1;locus_tag=D5F88_RS02215;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_016480151.1;transl_table=11 NZ_QYTI01000015.1 RefSeq pseudogene 4969 6319 . + . ID=gene-D5F88_RS02220;Name=D5F88_RS02220;end_range=6319,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02220;old_locus_tag=D5F88_02225;partial=true;pseudo=true NZ_QYTI01000015.1 Protein Homology CDS 4969 6319 . + 0 ID=cds-D5F88_RS02220;Parent=gene-D5F88_RS02220;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=6319,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001042262.1;locus_tag=D5F88_RS02220;partial=true;product=phosphoribosylformylglycinamidine synthase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000016.1 1 4795 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000016.1 RefSeq region 1 4795 . + . ID=NZ_QYTI01000016.1:1..4795;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000016.1 RefSeq gene 1 532 . - . ID=gene-D5F88_RS02225;Name=D5F88_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02225;old_locus_tag=D5F88_02230;partial=true;start_range=.,1 NZ_QYTI01000016.1 Protein Homology CDS 1 532 . - 0 ID=cds-WP_124773211.1;Parent=gene-D5F88_RS02225;Dbxref=GenBank:WP_124773211.1;Name=WP_124773211.1;Ontology_term=GO:0009058,GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000171461.1;locus_tag=D5F88_RS02225;partial=true;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_124773211.1;start_range=.,1;transl_table=11 NZ_QYTI01000016.1 RefSeq gene 640 1608 . - . ID=gene-D5F88_RS02230;Name=D5F88_RS02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02230;old_locus_tag=D5F88_02235 NZ_QYTI01000016.1 Protein Homology CDS 640 1608 . - 0 ID=cds-WP_016502368.1;Parent=gene-D5F88_RS02230;Dbxref=GenBank:WP_016502368.1;Name=WP_016502368.1;Ontology_term=GO:0009156,GO:0004749;gbkey=CDS;go_function=ribose phosphate diphosphokinase activity|0004749||IEA;go_process=ribonucleoside monophosphate biosynthetic process|0009156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000122447.1;locus_tag=D5F88_RS02230;product=ribose-phosphate diphosphokinase;protein_id=WP_016502368.1;transl_table=11 NZ_QYTI01000016.1 RefSeq gene 1732 3093 . - . ID=gene-D5F88_RS02235;Name=D5F88_RS02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02235;old_locus_tag=D5F88_02240 NZ_QYTI01000016.1 Protein Homology CDS 1732 3093 . - 0 ID=cds-WP_124773213.1;Parent=gene-D5F88_RS02235;Dbxref=GenBank:WP_124773213.1;Name=WP_124773213.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646828.1;locus_tag=D5F88_RS02235;product=PcsB-like coiled-coil domain-containing protein;protein_id=WP_124773213.1;transl_table=11 NZ_QYTI01000016.1 RefSeq gene 3329 3416 . - . ID=gene-D5F88_RS02240;Name=D5F88_RS02240;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02240;old_locus_tag=D5F88_02245 NZ_QYTI01000016.1 tRNAscan-SE tRNA 3329 3416 . - . ID=rna-D5F88_RS02240;Parent=gene-D5F88_RS02240;anticodon=(pos:complement(3380..3382));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02240;product=tRNA-Ser NZ_QYTI01000016.1 tRNAscan-SE exon 3329 3416 . - . ID=exon-D5F88_RS02240-1;Parent=rna-D5F88_RS02240;anticodon=(pos:complement(3380..3382));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02240;product=tRNA-Ser NZ_QYTI01000016.1 RefSeq gene 3430 3503 . - . ID=gene-D5F88_RS02245;Name=D5F88_RS02245;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02245;old_locus_tag=D5F88_02250 NZ_QYTI01000016.1 tRNAscan-SE tRNA 3430 3503 . - . ID=rna-D5F88_RS02245;Parent=gene-D5F88_RS02245;anticodon=(pos:complement(3467..3469));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02245;product=tRNA-Ile NZ_QYTI01000016.1 tRNAscan-SE exon 3430 3503 . - . ID=exon-D5F88_RS02245-1;Parent=rna-D5F88_RS02245;anticodon=(pos:complement(3467..3469));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02245;product=tRNA-Ile NZ_QYTI01000016.1 RefSeq gene 3538 3608 . - . ID=gene-D5F88_RS02250;Name=D5F88_RS02250;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02250;old_locus_tag=D5F88_02255 NZ_QYTI01000016.1 tRNAscan-SE tRNA 3538 3608 . - . ID=rna-D5F88_RS02250;Parent=gene-D5F88_RS02250;anticodon=(pos:complement(3574..3576));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02250;product=tRNA-Gly NZ_QYTI01000016.1 tRNAscan-SE exon 3538 3608 . - . ID=exon-D5F88_RS02250-1;Parent=rna-D5F88_RS02250;anticodon=(pos:complement(3574..3576));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02250;product=tRNA-Gly NZ_QYTI01000016.1 RefSeq gene 3628 3700 . - . ID=gene-D5F88_RS02255;Name=D5F88_RS02255;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02255;old_locus_tag=D5F88_02260 NZ_QYTI01000016.1 tRNAscan-SE tRNA 3628 3700 . - . ID=rna-D5F88_RS02255;Parent=gene-D5F88_RS02255;anticodon=(pos:complement(3665..3667));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02255;product=tRNA-Phe NZ_QYTI01000016.1 tRNAscan-SE exon 3628 3700 . - . ID=exon-D5F88_RS02255-1;Parent=rna-D5F88_RS02255;anticodon=(pos:complement(3665..3667));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02255;product=tRNA-Phe NZ_QYTI01000016.1 RefSeq gene 3703 3776 . - . ID=gene-D5F88_RS02260;Name=D5F88_RS02260;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02260;old_locus_tag=D5F88_02265 NZ_QYTI01000016.1 tRNAscan-SE tRNA 3703 3776 . - . ID=rna-D5F88_RS02260;Parent=gene-D5F88_RS02260;anticodon=(pos:complement(3740..3742));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02260;product=tRNA-Met NZ_QYTI01000016.1 tRNAscan-SE exon 3703 3776 . - . ID=exon-D5F88_RS02260-1;Parent=rna-D5F88_RS02260;anticodon=(pos:complement(3740..3742));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02260;product=tRNA-Met NZ_QYTI01000016.1 RefSeq gene 3787 3876 . - . ID=gene-D5F88_RS02265;Name=D5F88_RS02265;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02265;old_locus_tag=D5F88_02270 NZ_QYTI01000016.1 tRNAscan-SE tRNA 3787 3876 . - . ID=rna-D5F88_RS02265;Parent=gene-D5F88_RS02265;anticodon=(pos:complement(3838..3840));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02265;product=tRNA-Ser NZ_QYTI01000016.1 tRNAscan-SE exon 3787 3876 . - . ID=exon-D5F88_RS02265-1;Parent=rna-D5F88_RS02265;anticodon=(pos:complement(3838..3840));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02265;product=tRNA-Ser NZ_QYTI01000016.1 RefSeq gene 3892 3965 . - . ID=gene-D5F88_RS02270;Name=D5F88_RS02270;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02270;old_locus_tag=D5F88_02275 NZ_QYTI01000016.1 tRNAscan-SE tRNA 3892 3965 . - . ID=rna-D5F88_RS02270;Parent=gene-D5F88_RS02270;anticodon=(pos:complement(3929..3931));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02270;product=tRNA-Ile NZ_QYTI01000016.1 tRNAscan-SE exon 3892 3965 . - . ID=exon-D5F88_RS02270-1;Parent=rna-D5F88_RS02270;anticodon=(pos:complement(3929..3931));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02270;product=tRNA-Ile NZ_QYTI01000016.1 RefSeq gene 3985 4058 . - . ID=gene-D5F88_RS02275;Name=D5F88_RS02275;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02275;old_locus_tag=D5F88_02280 NZ_QYTI01000016.1 tRNAscan-SE tRNA 3985 4058 . - . ID=rna-D5F88_RS02275;Parent=gene-D5F88_RS02275;anticodon=(pos:complement(4022..4024));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02275;product=tRNA-Met NZ_QYTI01000016.1 tRNAscan-SE exon 3985 4058 . - . ID=exon-D5F88_RS02275-1;Parent=rna-D5F88_RS02275;anticodon=(pos:complement(4022..4024));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02275;product=tRNA-Met NZ_QYTI01000016.1 RefSeq gene 4074 4147 . - . ID=gene-D5F88_RS02280;Name=D5F88_RS02280;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02280;old_locus_tag=D5F88_02285 NZ_QYTI01000016.1 tRNAscan-SE tRNA 4074 4147 . - . ID=rna-D5F88_RS02280;Parent=gene-D5F88_RS02280;anticodon=(pos:complement(4111..4113));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02280;product=tRNA-Pro NZ_QYTI01000016.1 tRNAscan-SE exon 4074 4147 . - . ID=exon-D5F88_RS02280-1;Parent=rna-D5F88_RS02280;anticodon=(pos:complement(4111..4113));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02280;product=tRNA-Pro NZ_QYTI01000016.1 RefSeq gene 4155 4228 . - . ID=gene-D5F88_RS02285;Name=D5F88_RS02285;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02285;old_locus_tag=D5F88_02290 NZ_QYTI01000016.1 tRNAscan-SE tRNA 4155 4228 . - . ID=rna-D5F88_RS02285;Parent=gene-D5F88_RS02285;anticodon=(pos:complement(4192..4194));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02285;product=tRNA-Arg NZ_QYTI01000016.1 tRNAscan-SE exon 4155 4228 . - . ID=exon-D5F88_RS02285-1;Parent=rna-D5F88_RS02285;anticodon=(pos:complement(4192..4194));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02285;product=tRNA-Arg NZ_QYTI01000016.1 RefSeq gene 4240 4324 . - . ID=gene-D5F88_RS02290;Name=D5F88_RS02290;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02290;old_locus_tag=D5F88_02295 NZ_QYTI01000016.1 tRNAscan-SE tRNA 4240 4324 . - . ID=rna-D5F88_RS02290;Parent=gene-D5F88_RS02290;anticodon=(pos:complement(4288..4290));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02290;product=tRNA-Leu NZ_QYTI01000016.1 tRNAscan-SE exon 4240 4324 . - . ID=exon-D5F88_RS02290-1;Parent=rna-D5F88_RS02290;anticodon=(pos:complement(4288..4290));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02290;product=tRNA-Leu NZ_QYTI01000016.1 RefSeq gene 4333 4404 . - . ID=gene-D5F88_RS02295;Name=D5F88_RS02295;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02295;old_locus_tag=D5F88_02300 NZ_QYTI01000016.1 tRNAscan-SE tRNA 4333 4404 . - . ID=rna-D5F88_RS02295;Parent=gene-D5F88_RS02295;anticodon=(pos:complement(4370..4372));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02295;product=tRNA-Gly NZ_QYTI01000016.1 tRNAscan-SE exon 4333 4404 . - . ID=exon-D5F88_RS02295-1;Parent=rna-D5F88_RS02295;anticodon=(pos:complement(4370..4372));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02295;product=tRNA-Gly NZ_QYTI01000016.1 RefSeq gene 4438 4510 . - . ID=gene-D5F88_RS02300;Name=D5F88_RS02300;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02300;old_locus_tag=D5F88_02305 NZ_QYTI01000016.1 tRNAscan-SE tRNA 4438 4510 . - . ID=rna-D5F88_RS02300;Parent=gene-D5F88_RS02300;anticodon=(pos:complement(4475..4477));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02300;product=tRNA-Thr NZ_QYTI01000016.1 tRNAscan-SE exon 4438 4510 . - . ID=exon-D5F88_RS02300-1;Parent=rna-D5F88_RS02300;anticodon=(pos:complement(4475..4477));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02300;product=tRNA-Thr NZ_QYTI01000016.1 RefSeq gene 4521 4602 . - . ID=gene-D5F88_RS02305;Name=D5F88_RS02305;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02305;old_locus_tag=D5F88_02310 NZ_QYTI01000016.1 tRNAscan-SE tRNA 4521 4602 . - . ID=rna-D5F88_RS02305;Parent=gene-D5F88_RS02305;anticodon=(pos:complement(4566..4568));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02305;product=tRNA-Leu NZ_QYTI01000016.1 tRNAscan-SE exon 4521 4602 . - . ID=exon-D5F88_RS02305-1;Parent=rna-D5F88_RS02305;anticodon=(pos:complement(4566..4568));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02305;product=tRNA-Leu NZ_QYTI01000016.1 RefSeq gene 4612 4684 . - . ID=gene-D5F88_RS02310;Name=D5F88_RS02310;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02310;old_locus_tag=D5F88_02315 NZ_QYTI01000016.1 tRNAscan-SE tRNA 4612 4684 . - . ID=rna-D5F88_RS02310;Parent=gene-D5F88_RS02310;anticodon=(pos:complement(4649..4651));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02310;product=tRNA-Lys NZ_QYTI01000016.1 tRNAscan-SE exon 4612 4684 . - . ID=exon-D5F88_RS02310-1;Parent=rna-D5F88_RS02310;anticodon=(pos:complement(4649..4651));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02310;product=tRNA-Lys NZ_QYTI01000016.1 RefSeq gene 4687 4759 . - . ID=gene-D5F88_RS02315;Name=D5F88_RS02315;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02315;old_locus_tag=D5F88_02320 NZ_QYTI01000016.1 tRNAscan-SE tRNA 4687 4759 . - . ID=rna-D5F88_RS02315;Parent=gene-D5F88_RS02315;anticodon=(pos:complement(4724..4726));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02315;product=tRNA-Asp NZ_QYTI01000016.1 tRNAscan-SE exon 4687 4759 . - . ID=exon-D5F88_RS02315-1;Parent=rna-D5F88_RS02315;anticodon=(pos:complement(4724..4726));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02315;product=tRNA-Asp ##sequence-region NZ_QYTI01000017.1 1 5257 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000017.1 RefSeq region 1 5257 . + . ID=NZ_QYTI01000017.1:1..5257;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000017.1 RefSeq gene 1 1014 . - . ID=gene-D5F88_RS02320;Name=D5F88_RS02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02320;old_locus_tag=D5F88_02325;partial=true;start_range=.,1 NZ_QYTI01000017.1 Protein Homology CDS 1 1014 . - 0 ID=cds-WP_124773215.1;Parent=gene-D5F88_RS02320;Dbxref=GenBank:WP_124773215.1;Name=WP_124773215.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017772029.1;locus_tag=D5F88_RS02320;partial=true;product=distal tail protein Dit;protein_id=WP_124773215.1;start_range=.,1;transl_table=11 NZ_QYTI01000017.1 RefSeq gene 1026 4892 . - . ID=gene-D5F88_RS02325;Name=D5F88_RS02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02325;old_locus_tag=D5F88_02330 NZ_QYTI01000017.1 Protein Homology CDS 1026 4892 . - 0 ID=cds-WP_124773217.1;Parent=gene-D5F88_RS02325;Dbxref=GenBank:WP_124773217.1;Name=WP_124773217.1;Ontology_term=GO:0016032,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001051903.1;locus_tag=D5F88_RS02325;product=phage tail tape measure protein;protein_id=WP_124773217.1;transl_table=11 ##sequence-region NZ_QYTI01000018.1 1 1279 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000018.1 RefSeq region 1 1279 . + . ID=NZ_QYTI01000018.1:1..1279;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000018.1 RefSeq gene 1 1093 . + . ID=gene-D5F88_RS02330;Name=sip;gbkey=Gene;gene=sip;gene_biotype=protein_coding;locus_tag=D5F88_RS02330;old_locus_tag=D5F88_02335;partial=true;start_range=.,1 NZ_QYTI01000018.1 Protein Homology CDS 1 1093 . + 1 ID=cds-WP_124773219.1;Parent=gene-D5F88_RS02330;Dbxref=GenBank:WP_124773219.1;Name=WP_124773219.1;gbkey=CDS;gene=sip;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000783421.1;locus_tag=D5F88_RS02330;partial=true;product=surface immunogenic protein Sip;protein_id=WP_124773219.1;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000019.1 1 23198 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000019.1 RefSeq region 1 23198 . + . ID=NZ_QYTI01000019.1:1..23198;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000019.1 RefSeq pseudogene 1 456 . - . ID=gene-D5F88_RS02335;Name=D5F88_RS02335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02335;old_locus_tag=D5F88_02340;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000019.1 Protein Homology CDS 1 456 . - 0 ID=cds-D5F88_RS02335;Parent=gene-D5F88_RS02335;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS02335;partial=true;product=transposase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 680 1294 . + . ID=gene-D5F88_RS02340;Name=D5F88_RS02340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02340;old_locus_tag=D5F88_02345 NZ_QYTI01000019.1 Protein Homology CDS 680 1294 . + 0 ID=cds-WP_016502548.1;Parent=gene-D5F88_RS02340;Dbxref=GenBank:WP_016502548.1;Name=WP_016502548.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000020717.1;locus_tag=D5F88_RS02340;product=trimeric intracellular cation channel family protein;protein_id=WP_016502548.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 1309 2121 . + . ID=gene-D5F88_RS02345;Name=D5F88_RS02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02345;old_locus_tag=D5F88_02350 NZ_QYTI01000019.1 Protein Homology CDS 1309 2121 . + 0 ID=cds-WP_000593333.1;Parent=gene-D5F88_RS02345;Dbxref=GenBank:WP_000593333.1;Name=WP_000593333.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000593337.1;locus_tag=D5F88_RS02345;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_000593333.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 2234 4876 . + . ID=gene-D5F88_RS02350;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=D5F88_RS02350;old_locus_tag=D5F88_02355 NZ_QYTI01000019.1 Protein Homology CDS 2234 4876 . + 0 ID=cds-WP_086163235.1;Parent=gene-D5F88_RS02350;Dbxref=GenBank:WP_086163235.1;Name=WP_086163235.1;Ontology_term=GO:0006260,GO:0003887;gbkey=CDS;gene=polA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019314525.1;locus_tag=D5F88_RS02350;product=DNA polymerase I;protein_id=WP_086163235.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 4906 5346 . + . ID=gene-D5F88_RS02355;Name=D5F88_RS02355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02355;old_locus_tag=D5F88_02360 NZ_QYTI01000019.1 Protein Homology CDS 4906 5346 . + 0 ID=cds-WP_000262488.1;Parent=gene-D5F88_RS02355;Dbxref=GenBank:WP_000262488.1;Name=WP_000262488.1;Ontology_term=GO:0120225;gbkey=CDS;go_function=coenzyme A binding|0120225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000262488.1;locus_tag=D5F88_RS02355;product=CoA-binding protein;protein_id=WP_000262488.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 5428 5907 . + . ID=gene-D5F88_RS02360;Name=perR;gbkey=Gene;gene=perR;gene_biotype=protein_coding;locus_tag=D5F88_RS02360;old_locus_tag=D5F88_02365 NZ_QYTI01000019.1 Protein Homology CDS 5428 5907 . + 0 ID=cds-WP_000377090.1;Parent=gene-D5F88_RS02360;Dbxref=GenBank:WP_000377090.1;Name=WP_000377090.1;gbkey=CDS;gene=perR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000377090.1;locus_tag=D5F88_RS02360;product=peroxide-responsive transcriptional repressor PerR;protein_id=WP_000377090.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 6060 7625 . + . ID=gene-D5F88_RS02365;Name=pbsP;gbkey=Gene;gene=pbsP;gene_biotype=protein_coding;locus_tag=D5F88_RS02365;old_locus_tag=D5F88_02370 NZ_QYTI01000019.1 Protein Homology CDS 6060 7625 . + 0 ID=cds-WP_086163236.1;Parent=gene-D5F88_RS02365;Dbxref=GenBank:WP_086163236.1;Name=WP_086163236.1;gbkey=CDS;gene=pbsP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000703866.1;locus_tag=D5F88_RS02365;product=plasminogen-binding protein PbsP;protein_id=WP_086163236.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 7738 8424 . + . ID=gene-D5F88_RS02370;Name=D5F88_RS02370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02370;old_locus_tag=D5F88_02375 NZ_QYTI01000019.1 Protein Homology CDS 7738 8424 . + 0 ID=cds-WP_000192298.1;Parent=gene-D5F88_RS02370;Dbxref=GenBank:WP_000192298.1;Name=WP_000192298.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631698.1;locus_tag=D5F88_RS02370;product=response regulator transcription factor;protein_id=WP_000192298.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 8426 9463 . + . ID=gene-D5F88_RS02375;Name=D5F88_RS02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02375;old_locus_tag=D5F88_02380 NZ_QYTI01000019.1 Protein Homology CDS 8426 9463 . + 0 ID=cds-WP_000770244.1;Parent=gene-D5F88_RS02375;Dbxref=GenBank:WP_000770244.1;Name=WP_000770244.1;Ontology_term=GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000770238.1;locus_tag=D5F88_RS02375;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_000770244.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 9477 10217 . - . ID=gene-D5F88_RS02380;Name=D5F88_RS02380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02380;old_locus_tag=D5F88_02385 NZ_QYTI01000019.1 Protein Homology CDS 9477 10217 . - 0 ID=cds-WP_086163237.1;Parent=gene-D5F88_RS02380;Dbxref=GenBank:WP_086163237.1;Name=WP_086163237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631700.1;locus_tag=D5F88_RS02380;product=DUF975 family protein;protein_id=WP_086163237.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 10404 11546 . + . ID=gene-D5F88_RS02385;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=D5F88_RS02385;old_locus_tag=D5F88_02390 NZ_QYTI01000019.1 Protein Homology CDS 10404 11546 . + 0 ID=cds-WP_000129511.1;Parent=gene-D5F88_RS02385;Dbxref=GenBank:WP_000129511.1;Name=WP_000129511.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=tRNA-guanosine(34) queuine transglycosylase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011184131.1;locus_tag=D5F88_RS02385;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_000129511.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 11652 11963 . + . ID=gene-D5F88_RS02390;Name=D5F88_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02390;old_locus_tag=D5F88_02395 NZ_QYTI01000019.1 Protein Homology CDS 11652 11963 . + 0 ID=cds-WP_000983189.1;Parent=gene-D5F88_RS02390;Dbxref=GenBank:WP_000983189.1;Name=WP_000983189.1;Ontology_term=GO:0008270;gbkey=CDS;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000983195.1;locus_tag=D5F88_RS02390;product=CHY zinc finger protein;protein_id=WP_000983189.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 11970 12509 . + . ID=gene-D5F88_RS02395;Name=D5F88_RS02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02395;old_locus_tag=D5F88_02400 NZ_QYTI01000019.1 Protein Homology CDS 11970 12509 . + 0 ID=cds-WP_000469147.1;Parent=gene-D5F88_RS02395;Dbxref=GenBank:WP_000469147.1;Name=WP_000469147.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000469150.1;locus_tag=D5F88_RS02395;product=biotin transporter BioY;protein_id=WP_000469147.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 12648 13424 . + . ID=gene-D5F88_RS02400;Name=D5F88_RS02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02400;old_locus_tag=D5F88_02405 NZ_QYTI01000019.1 Protein Homology CDS 12648 13424 . + 0 ID=cds-WP_000779461.1;Parent=gene-D5F88_RS02400;Dbxref=GenBank:WP_000779461.1;Name=WP_000779461.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001932415.1;locus_tag=D5F88_RS02400;product=MBL fold metallo-hydrolase;protein_id=WP_000779461.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 13424 13930 . + . ID=gene-D5F88_RS02405;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=D5F88_RS02405;old_locus_tag=D5F88_02410 NZ_QYTI01000019.1 Protein Homology CDS 13424 13930 . + 0 ID=cds-WP_016502553.1;Parent=gene-D5F88_RS02405;Dbxref=GenBank:WP_016502553.1;Name=WP_016502553.1;Ontology_term=GO:0002100,GO:0008251,GO:0008270;gbkey=CDS;gene=tadA;go_function=tRNA-specific adenosine deaminase activity|0008251||IEA,zinc ion binding|0008270||IEA;go_process=tRNA wobble adenosine to inosine editing|0002100||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001169006.1;locus_tag=D5F88_RS02405;product=tRNA adenosine(34) deaminase TadA;protein_id=WP_016502553.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 13965 14050 . + . ID=gene-D5F88_RS02410;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=D5F88_RS02410;old_locus_tag=D5F88_02415 NZ_QYTI01000019.1 cmsearch SRP_RNA 13965 14050 . + . ID=rna-D5F88_RS02410;Parent=gene-D5F88_RS02410;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS02410;product=signal recognition particle sRNA small type NZ_QYTI01000019.1 cmsearch exon 13965 14050 . + . ID=exon-D5F88_RS02410-1;Parent=rna-D5F88_RS02410;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS02410;product=signal recognition particle sRNA small type NZ_QYTI01000019.1 RefSeq gene 14202 15551 . + . ID=gene-D5F88_RS02415;Name=D5F88_RS02415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02415;old_locus_tag=D5F88_02420 NZ_QYTI01000019.1 Protein Homology CDS 14202 15551 . + 0 ID=cds-WP_000148892.1;Parent=gene-D5F88_RS02415;Dbxref=GenBank:WP_000148892.1;Name=WP_000148892.1;Ontology_term=GO:0006096,GO:0004347;gbkey=CDS;go_function=glucose-6-phosphate isomerase activity|0004347||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648691.1;locus_tag=D5F88_RS02415;product=glucose-6-phosphate isomerase;protein_id=WP_000148892.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 15824 16351 . + . ID=gene-D5F88_RS02420;Name=D5F88_RS02420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02420;old_locus_tag=D5F88_02425 NZ_QYTI01000019.1 Protein Homology CDS 15824 16351 . + 0 ID=cds-WP_000412414.1;Parent=gene-D5F88_RS02420;Dbxref=GenBank:WP_000412414.1;Name=WP_000412414.1;Ontology_term=GO:0006730,GO:0030272;gbkey=CDS;go_function=5-formyltetrahydrofolate cyclo-ligase activity|0030272||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058375.1;locus_tag=D5F88_RS02420;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_000412414.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 16342 17019 . + . ID=gene-D5F88_RS02425;Name=D5F88_RS02425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02425;old_locus_tag=D5F88_02430 NZ_QYTI01000019.1 Protein Homology CDS 16342 17019 . + 0 ID=cds-WP_016502554.1;Parent=gene-D5F88_RS02425;Dbxref=GenBank:WP_016502554.1;Name=WP_016502554.1;Ontology_term=GO:0006508,GO:0004252,GO:0008270,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480347.1;locus_tag=D5F88_RS02425;product=rhomboid family intramembrane serine protease;protein_id=WP_016502554.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 17151 18194 . + . ID=gene-D5F88_RS02430;Name=D5F88_RS02430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02430;old_locus_tag=D5F88_02435 NZ_QYTI01000019.1 Protein Homology CDS 17151 18194 . + 0 ID=cds-WP_001080265.1;Parent=gene-D5F88_RS02430;Dbxref=GenBank:WP_001080265.1;Name=WP_001080265.1;Ontology_term=GO:0016020,GO:0055052;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019315854.1;locus_tag=D5F88_RS02430;product=BMP family lipoprotein;protein_id=WP_001080265.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 18285 19184 . - . ID=gene-D5F88_RS02435;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=D5F88_RS02435;old_locus_tag=D5F88_02440 NZ_QYTI01000019.1 Protein Homology CDS 18285 19184 . - 0 ID=cds-WP_000868271.1;Parent=gene-D5F88_RS02435;Dbxref=GenBank:WP_000868271.1;Name=WP_000868271.1;Ontology_term=GO:0006011,GO:0003983;gbkey=CDS;gene=galU;go_function=UTP:glucose-1-phosphate uridylyltransferase activity|0003983||IEA;go_process=UDP-alpha-D-glucose metabolic process|0006011||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000868270.1;locus_tag=D5F88_RS02435;product=UTP--glucose-1-phosphate uridylyltransferase GalU;protein_id=WP_000868271.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 19221 20237 . - . ID=gene-D5F88_RS02440;Name=D5F88_RS02440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02440;old_locus_tag=D5F88_02445 NZ_QYTI01000019.1 Protein Homology CDS 19221 20237 . - 0 ID=cds-WP_000166107.1;Parent=gene-D5F88_RS02440;Dbxref=GenBank:WP_000166107.1;Name=WP_000166107.1;Ontology_term=GO:0046168,GO:0047952,GO:0051287,GO:0009331;gbkey=CDS;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase [NAD(P)+] activity|0047952||IEA,NAD binding|0051287||IEA;go_process=glycerol-3-phosphate catabolic process|0046168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000166102.1;locus_tag=D5F88_RS02440;product=NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;protein_id=WP_000166107.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 20407 20736 . + . ID=gene-D5F88_RS02445;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=D5F88_RS02445;old_locus_tag=D5F88_02450 NZ_QYTI01000019.1 Protein Homology CDS 20407 20736 . + 0 ID=cds-WP_000754611.1;Parent=gene-D5F88_RS02445;Dbxref=GenBank:WP_000754611.1;Name=WP_000754611.1;Ontology_term=GO:0008033,GO:0000049,GO:0004526;gbkey=CDS;gene=rnpA;go_function=tRNA binding|0000049||IEA,ribonuclease P activity|0004526||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000754613.1;locus_tag=D5F88_RS02445;product=ribonuclease P protein component;protein_id=WP_000754611.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 20749 21564 . + . ID=gene-D5F88_RS02450;Name=D5F88_RS02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02450;old_locus_tag=D5F88_02455 NZ_QYTI01000019.1 Protein Homology CDS 20749 21564 . + 0 ID=cds-WP_000727922.1;Parent=gene-D5F88_RS02450;Dbxref=GenBank:WP_000727922.1;Name=WP_000727922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000727922.1;locus_tag=D5F88_RS02450;product=membrane protein insertase YidC;protein_id=WP_000727922.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 21572 22393 . + . ID=gene-D5F88_RS02455;Name=jag;gbkey=Gene;gene=jag;gene_biotype=protein_coding;locus_tag=D5F88_RS02455;old_locus_tag=D5F88_02460 NZ_QYTI01000019.1 Protein Homology CDS 21572 22393 . + 0 ID=cds-WP_000242579.1;Parent=gene-D5F88_RS02455;Dbxref=GenBank:WP_000242579.1;Name=WP_000242579.1;Ontology_term=GO:0003676,GO:0003723;gbkey=CDS;gene=jag;go_function=nucleic acid binding|0003676||IEA,RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000242577.1;locus_tag=D5F88_RS02455;product=RNA-binding cell elongation regulator Jag/EloR;protein_id=WP_000242579.1;transl_table=11 NZ_QYTI01000019.1 RefSeq gene 22731 23198 . + . ID=gene-D5F88_RS02460;Name=D5F88_RS02460;end_range=23198,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS02460;old_locus_tag=D5F88_02465;partial=true NZ_QYTI01000019.1 cmsearch rRNA 22731 23198 . + . ID=rna-D5F88_RS02460;Parent=gene-D5F88_RS02460;Dbxref=RFAM:RF00177;end_range=23198,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS02460;partial=true;product=16S ribosomal RNA NZ_QYTI01000019.1 cmsearch exon 22731 23198 . + . ID=exon-D5F88_RS02460-1;Parent=rna-D5F88_RS02460;Dbxref=RFAM:RF00177;end_range=23198,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS02460;partial=true;product=16S ribosomal RNA ##sequence-region NZ_QYTI01000002.1 1 28277 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000002.1 RefSeq region 1 28277 . + . ID=NZ_QYTI01000002.1:1..28277;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000002.1 RefSeq gene 1 526 . - . ID=gene-D5F88_RS01065;Name=D5F88_RS01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01065;old_locus_tag=D5F88_01065;partial=true;start_range=.,1 NZ_QYTI01000002.1 Protein Homology CDS 1 526 . - 0 ID=cds-WP_142997427.1;Parent=gene-D5F88_RS01065;Dbxref=GenBank:WP_142997427.1;Name=WP_142997427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631716.1;locus_tag=D5F88_RS01065;partial=true;product=helix-turn-helix domain-containing protein;protein_id=WP_142997427.1;start_range=.,1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 680 1978 . - . ID=gene-D5F88_RS01070;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=D5F88_RS01070;old_locus_tag=D5F88_01070 NZ_QYTI01000002.1 Protein Homology CDS 680 1978 . - 0 ID=cds-WP_016502387.1;Parent=gene-D5F88_RS01070;Dbxref=GenBank:WP_016502387.1;Name=WP_016502387.1;Ontology_term=GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000572892.1;locus_tag=D5F88_RS01070;product=adenylosuccinate lyase;protein_id=WP_016502387.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 2239 4773 . - . ID=gene-D5F88_RS01075;Name=D5F88_RS01075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01075;old_locus_tag=D5F88_01075 NZ_QYTI01000002.1 Protein Homology CDS 2239 4773 . - 0 ID=cds-WP_180383566.1;Parent=gene-D5F88_RS01075;Dbxref=GenBank:WP_180383566.1;Name=WP_180383566.1;Ontology_term=GO:0003676,GO:0004386,GO:0005524,GO:0016887;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: protein motif:HMM:NF012492.6;locus_tag=D5F88_RS01075;product=DEAD/DEAH box helicase;protein_id=WP_180383566.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 4823 5896 . - . ID=gene-D5F88_RS01080;Name=purK;gbkey=Gene;gene=purK;gene_biotype=protein_coding;locus_tag=D5F88_RS01080;old_locus_tag=D5F88_01080 NZ_QYTI01000002.1 Protein Homology CDS 4823 5896 . - 0 ID=cds-WP_086163173.1;Parent=gene-D5F88_RS01080;Dbxref=GenBank:WP_086163173.1;Name=WP_086163173.1;Ontology_term=GO:0006189,GO:0004638,GO:0005524,GO:0046872;gbkey=CDS;gene=purK;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002297771.1;locus_tag=D5F88_RS01080;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=WP_086163173.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 5883 6371 . - . ID=gene-D5F88_RS01085;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=D5F88_RS01085;old_locus_tag=D5F88_01085 NZ_QYTI01000002.1 Protein Homology CDS 5883 6371 . - 0 ID=cds-WP_016502384.1;Parent=gene-D5F88_RS01085;Dbxref=GenBank:WP_016502384.1;Name=WP_016502384.1;Ontology_term=GO:0006189,GO:0009152,GO:0004638,GO:0009320;gbkey=CDS;gene=purE;go_component=phosphoribosylaminoimidazole carboxylase complex|0009320||IEA;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011888522.1;locus_tag=D5F88_RS01085;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=WP_016502384.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 6583 7848 . - . ID=gene-D5F88_RS01090;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=D5F88_RS01090;old_locus_tag=D5F88_01090 NZ_QYTI01000002.1 Protein Homology CDS 6583 7848 . - 0 ID=cds-WP_016502383.1;Parent=gene-D5F88_RS01090;Dbxref=GenBank:WP_016502383.1;Name=WP_016502383.1;Ontology_term=GO:0009113,GO:0004637;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502383.1;locus_tag=D5F88_RS01090;product=phosphoribosylamine--glycine ligase;protein_id=WP_016502383.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 8131 8934 . + . ID=gene-D5F88_RS01095;Name=D5F88_RS01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01095;old_locus_tag=D5F88_01095 NZ_QYTI01000002.1 Protein Homology CDS 8131 8934 . + 0 ID=cds-WP_000158188.1;Parent=gene-D5F88_RS01095;Dbxref=GenBank:WP_000158188.1;Name=WP_000158188.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000158185.1;locus_tag=D5F88_RS01095;product=MurR/RpiR family transcriptional regulator;protein_id=WP_000158188.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 8957 9934 . - . ID=gene-D5F88_RS01100;Name=D5F88_RS01100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01100;old_locus_tag=D5F88_01100 NZ_QYTI01000002.1 Protein Homology CDS 8957 9934 . - 0 ID=cds-WP_000573443.1;Parent=gene-D5F88_RS01100;Dbxref=GenBank:WP_000573443.1;Name=WP_000573443.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000573447.1;locus_tag=D5F88_RS01100;product=alpha/beta fold hydrolase;protein_id=WP_000573443.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 9942 10823 . - . ID=gene-D5F88_RS01105;Name=D5F88_RS01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01105;old_locus_tag=D5F88_01105 NZ_QYTI01000002.1 Protein Homology CDS 9942 10823 . - 0 ID=cds-WP_124773149.1;Parent=gene-D5F88_RS01105;Dbxref=GenBank:WP_124773149.1;Name=WP_124773149.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000198864.1;locus_tag=D5F88_RS01105;product=ROK family protein;protein_id=WP_124773149.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 10840 11757 . - . ID=gene-D5F88_RS01110;Name=D5F88_RS01110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01110;old_locus_tag=D5F88_01110 NZ_QYTI01000002.1 Protein Homology CDS 10840 11757 . - 0 ID=cds-WP_016502381.1;Parent=gene-D5F88_RS01110;Dbxref=GenBank:WP_016502381.1;Name=WP_016502381.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000654097.1;locus_tag=D5F88_RS01110;product=dihydrodipicolinate synthase family protein;protein_id=WP_016502381.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 11754 12416 . - . ID=gene-D5F88_RS01115;Name=D5F88_RS01115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01115;old_locus_tag=D5F88_01115 NZ_QYTI01000002.1 Protein Homology CDS 11754 12416 . - 0 ID=cds-WP_016502380.1;Parent=gene-D5F88_RS01115;Dbxref=GenBank:WP_016502380.1;Name=WP_016502380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000710138.1;locus_tag=D5F88_RS01115;product=YesL family protein;protein_id=WP_016502380.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 12436 12879 . - . ID=gene-D5F88_RS01120;Name=D5F88_RS01120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01120;old_locus_tag=D5F88_01120 NZ_QYTI01000002.1 Protein Homology CDS 12436 12879 . - 0 ID=cds-WP_016502379.1;Parent=gene-D5F88_RS01120;Dbxref=GenBank:WP_016502379.1;Name=WP_016502379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502379.1;locus_tag=D5F88_RS01120;product=YhcH/YjgK/YiaL family protein;protein_id=WP_016502379.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 12892 13722 . - . ID=gene-D5F88_RS01125;Name=D5F88_RS01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01125;old_locus_tag=D5F88_01125 NZ_QYTI01000002.1 Protein Homology CDS 12892 13722 . - 0 ID=cds-WP_086163172.1;Parent=gene-D5F88_RS01125;Dbxref=GenBank:WP_086163172.1;Name=WP_086163172.1;Ontology_term=GO:0008643,GO:0055085;gbkey=CDS;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767339.1;locus_tag=D5F88_RS01125;product=carbohydrate ABC transporter permease;protein_id=WP_086163172.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 13732 14619 . - . ID=gene-D5F88_RS01130;Name=D5F88_RS01130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01130;old_locus_tag=D5F88_01130 NZ_QYTI01000002.1 Protein Homology CDS 13732 14619 . - 0 ID=cds-WP_001260027.1;Parent=gene-D5F88_RS01130;Dbxref=GenBank:WP_001260027.1;Name=WP_001260027.1;Ontology_term=GO:0008643,GO:0055085,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003041053.1;locus_tag=D5F88_RS01130;product=carbohydrate ABC transporter permease;protein_id=WP_001260027.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 14707 16023 . - . ID=gene-D5F88_RS01135;Name=D5F88_RS01135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01135;old_locus_tag=D5F88_01135 NZ_QYTI01000002.1 Protein Homology CDS 14707 16023 . - 0 ID=cds-WP_000023462.1;Parent=gene-D5F88_RS01135;Dbxref=GenBank:WP_000023462.1;Name=WP_000023462.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000023460.1;locus_tag=D5F88_RS01135;product=ABC transporter substrate-binding protein;protein_id=WP_000023462.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 16070 16768 . - . ID=gene-D5F88_RS01140;Name=D5F88_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01140;old_locus_tag=D5F88_01140 NZ_QYTI01000002.1 Protein Homology CDS 16070 16768 . - 0 ID=cds-WP_001120327.1;Parent=gene-D5F88_RS01140;Dbxref=GenBank:WP_001120327.1;Name=WP_001120327.1;Ontology_term=GO:0005975,GO:0006051,GO:0019262,GO:0047465;gbkey=CDS;go_function=N-acylglucosamine-6-phosphate 2-epimerase activity|0047465||IEA;go_process=carbohydrate metabolic process|0005975||IEA,N-acetylmannosamine metabolic process|0006051||IEA,N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480161.1;locus_tag=D5F88_RS01140;product=N-acetylmannosamine-6-phosphate 2-epimerase;protein_id=WP_001120327.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 17015 18319 . - . ID=gene-D5F88_RS01145;Name=sip;gbkey=Gene;gene=sip;gene_biotype=protein_coding;locus_tag=D5F88_RS01145;old_locus_tag=D5F88_01145 NZ_QYTI01000002.1 Protein Homology CDS 17015 18319 . - 0 ID=cds-WP_000783424.1;Parent=gene-D5F88_RS01145;Dbxref=GenBank:WP_000783424.1;Name=WP_000783424.1;gbkey=CDS;gene=sip;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000783421.1;locus_tag=D5F88_RS01145;product=surface immunogenic protein Sip;protein_id=WP_000783424.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 18466 19365 . - . ID=gene-D5F88_RS01150;Name=D5F88_RS01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01150;old_locus_tag=D5F88_01150 NZ_QYTI01000002.1 Protein Homology CDS 18466 19365 . - 0 ID=cds-WP_001045909.1;Parent=gene-D5F88_RS01150;Dbxref=GenBank:WP_001045909.1;Name=WP_001045909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001045916.1;locus_tag=D5F88_RS01150;product=lytic exoenzyme target recognition domain-containing protein;protein_id=WP_001045909.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 19557 21104 . - . ID=gene-D5F88_RS01155;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=D5F88_RS01155;old_locus_tag=D5F88_01155 NZ_QYTI01000002.1 Protein Homology CDS 19557 21104 . - 0 ID=cds-WP_016502376.1;Parent=gene-D5F88_RS01155;Dbxref=GenBank:WP_016502376.1;Name=WP_016502376.1;Ontology_term=GO:0006164,GO:0006189,GO:0003824,GO:0003937,GO:0004643;gbkey=CDS;gene=purH;go_function=catalytic activity|0003824||IEA,IMP cyclohydrolase activity|0003937||IEA,phosphoribosylaminoimidazolecarboxamide formyltransferase activity|0004643||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA,'de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006146083.1;locus_tag=D5F88_RS01155;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=WP_016502376.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 21124 21876 . - . ID=gene-D5F88_RS01160;Name=D5F88_RS01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01160;old_locus_tag=D5F88_01160 NZ_QYTI01000002.1 Protein Homology CDS 21124 21876 . - 0 ID=cds-WP_000780020.1;Parent=gene-D5F88_RS01160;Dbxref=GenBank:WP_000780020.1;Name=WP_000780020.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000780023.1;locus_tag=D5F88_RS01160;product=GNAT family N-acetyltransferase;protein_id=WP_000780020.1;transl_table=11 NZ_QYTI01000002.1 RefSeq gene 21899 22447 . - . ID=gene-D5F88_RS01165;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=D5F88_RS01165;old_locus_tag=D5F88_01165 NZ_QYTI01000002.1 Protein Homology CDS 21899 22447 . - 0 ID=cds-WP_016502375.1;Parent=gene-D5F88_RS01165;Dbxref=GenBank:WP_016502375.1;Name=WP_016502375.1;Ontology_term=GO:0006189,GO:0004644;gbkey=CDS;gene=purN;go_function=phosphoribosylglycinamide formyltransferase activity|0004644||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502375.1;locus_tag=D5F88_RS01165;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_016502375.1;transl_table=11 NZ_QYTI01000002.1 RefSeq pseudogene 22615 23637 . - . ID=gene-D5F88_RS01170;Name=purM;gbkey=Gene;gene=purM;gene_biotype=pseudogene;locus_tag=D5F88_RS01170;old_locus_tag=D5F88_01170;pseudo=true NZ_QYTI01000002.1 Protein Homology CDS 22615 23637 . - 0 ID=cds-D5F88_RS01170;Parent=gene-D5F88_RS01170;Note=internal stop;Ontology_term=GO:0006189,GO:0004641;gbkey=CDS;gene=purM;go_function=phosphoribosylformylglycinamidine cyclo-ligase activity|0004641||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480156.1;locus_tag=D5F88_RS01170;product=phosphoribosylformylglycinamidine cyclo-ligase;pseudo=true;transl_table=11 NZ_QYTI01000002.1 RefSeq pseudogene 23665 25115 . - . ID=gene-D5F88_RS01175;Name=purF;gbkey=Gene;gene=purF;gene_biotype=pseudogene;locus_tag=D5F88_RS01175;old_locus_tag=D5F88_01175;pseudo=true NZ_QYTI01000002.1 Protein Homology CDS 23665 25115 . - 0 ID=cds-D5F88_RS01175;Parent=gene-D5F88_RS01175;Note=frameshifted;Ontology_term=GO:0009113,GO:0004044;gbkey=CDS;gene=purF;go_function=amidophosphoribosyltransferase activity|0004044||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480155.1;locus_tag=D5F88_RS01175;product=amidophosphoribosyltransferase;pseudo=true;transl_table=11 NZ_QYTI01000002.1 RefSeq pseudogene 25349 28277 . - . ID=gene-D5F88_RS01180;Name=D5F88_RS01180;end_range=28277,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS01180;old_locus_tag=D5F88_01180;partial=true;pseudo=true NZ_QYTI01000002.1 Protein Homology CDS 25349 28277 . - 1 ID=cds-D5F88_RS01180;Parent=gene-D5F88_RS01180;Note=internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0006189,GO:0004642;end_range=28277,.;gbkey=CDS;go_function=phosphoribosylformylglycinamidine synthase activity|0004642||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000361233.1;locus_tag=D5F88_RS01180;partial=true;product=phosphoribosylformylglycinamidine synthase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000020.1 1 1237 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000020.1 RefSeq region 1 1237 . + . ID=NZ_QYTI01000020.1:1..1237;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000020.1 RefSeq pseudogene 1 1116 . - . ID=gene-D5F88_RS02465;Name=D5F88_RS02465;end_range=1116,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02465;old_locus_tag=D5F88_02470;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000020.1 Protein Homology CDS 1 1116 . - 0 ID=cds-D5F88_RS02465;Parent=gene-D5F88_RS02465;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1116,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648441.1;locus_tag=D5F88_RS02465;partial=true;product=accessory Sec-dependent LPXTG-anchored adhesin;pseudo=true;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000021.1 1 2384 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000021.1 RefSeq region 1 2384 . + . ID=NZ_QYTI01000021.1:1..2384;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000021.1 RefSeq gene 1 1175 . + . ID=gene-D5F88_RS02470;Name=D5F88_RS02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02470;old_locus_tag=D5F88_02475;partial=true;start_range=.,1 NZ_QYTI01000021.1 Protein Homology CDS 1 1175 . + 2 ID=cds-WP_124773221.1;Parent=gene-D5F88_RS02470;Dbxref=GenBank:WP_124773221.1;Name=WP_124773221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000668942.1;locus_tag=D5F88_RS02470;partial=true;product=phage tail domain-containing protein;protein_id=WP_124773221.1;start_range=.,1;transl_table=11 NZ_QYTI01000021.1 RefSeq gene 1166 2384 . + . ID=gene-D5F88_RS02475;Name=D5F88_RS02475;end_range=2384,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02475;old_locus_tag=D5F88_02480;partial=true NZ_QYTI01000021.1 Protein Homology CDS 1166 2384 . + 0 ID=cds-WP_185696279.1;Parent=gene-D5F88_RS02475;Dbxref=GenBank:WP_185696279.1;Name=WP_185696279.1;Ontology_term=GO:0016032,GO:0005198;end_range=2384,.;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647570.1;locus_tag=D5F88_RS02475;partial=true;product=phage tail spike protein;protein_id=WP_185696279.1;transl_table=11 ##sequence-region NZ_QYTI01000022.1 1 5986 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000022.1 RefSeq region 1 5986 . + . ID=NZ_QYTI01000022.1:1..5986;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000022.1 RefSeq gene 1 808 . + . ID=gene-D5F88_RS11795;Name=D5F88_RS11795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11795;partial=true;start_range=.,1 NZ_QYTI01000022.1 Protein Homology CDS 1 808 . + 1 ID=cds-WP_260424969.1;Parent=gene-D5F88_RS11795;Dbxref=GenBank:WP_260424969.1;Name=WP_260424969.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647213.1;locus_tag=D5F88_RS11795;partial=true;product=conserved phage C-terminal domain-containing protein;protein_id=WP_260424969.1;start_range=.,1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 819 1676 . + . ID=gene-D5F88_RS02485;Name=D5F88_RS02485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02485;old_locus_tag=D5F88_02490 NZ_QYTI01000022.1 Protein Homology CDS 819 1676 . + 0 ID=cds-WP_124759470.1;Parent=gene-D5F88_RS02485;Dbxref=GenBank:WP_124759470.1;Name=WP_124759470.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006739453.1;locus_tag=D5F88_RS02485;product=ATP-binding protein;protein_id=WP_124759470.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 1676 1819 . + . ID=gene-D5F88_RS11660;Name=D5F88_RS11660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11660 NZ_QYTI01000022.1 Protein Homology CDS 1676 1819 . + 0 ID=cds-WP_185690894.1;Parent=gene-D5F88_RS11660;Dbxref=GenBank:WP_185690894.1;Name=WP_185690894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643875.1;locus_tag=D5F88_RS11660;product=hypothetical protein;protein_id=WP_185690894.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 1812 2087 . + . ID=gene-D5F88_RS02490;Name=D5F88_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02490;old_locus_tag=D5F88_02495 NZ_QYTI01000022.1 Protein Homology CDS 1812 2087 . + 0 ID=cds-WP_124759469.1-2;Parent=gene-D5F88_RS02490;Dbxref=GenBank:WP_124759469.1;Name=WP_124759469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643874.1;locus_tag=D5F88_RS02490;product=hypothetical protein;protein_id=WP_124759469.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 2074 2328 . + . ID=gene-D5F88_RS02495;Name=D5F88_RS02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02495;old_locus_tag=D5F88_02500 NZ_QYTI01000022.1 Protein Homology CDS 2074 2328 . + 0 ID=cds-WP_124749040.1-2;Parent=gene-D5F88_RS02495;Dbxref=GenBank:WP_124749040.1;Name=WP_124749040.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008088460.1;locus_tag=D5F88_RS02495;product=hypothetical protein;protein_id=WP_124749040.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 2331 2492 . + . ID=gene-D5F88_RS02500;Name=D5F88_RS02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02500;old_locus_tag=D5F88_02505 NZ_QYTI01000022.1 Protein Homology CDS 2331 2492 . + 0 ID=cds-WP_079399046.1;Parent=gene-D5F88_RS02500;Dbxref=GenBank:WP_079399046.1;Name=WP_079399046.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001288191.1;locus_tag=D5F88_RS02500;product=hypothetical protein;protein_id=WP_079399046.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 2493 2975 . + . ID=gene-D5F88_RS02505;Name=D5F88_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02505;old_locus_tag=D5F88_02510 NZ_QYTI01000022.1 Protein Homology CDS 2493 2975 . + 0 ID=cds-WP_124749039.1;Parent=gene-D5F88_RS02505;Dbxref=GenBank:WP_124749039.1;Name=WP_124749039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000323862.1;locus_tag=D5F88_RS02505;product=siphovirus Gp157 family protein;protein_id=WP_124749039.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 2976 3650 . + . ID=gene-D5F88_RS02510;Name=D5F88_RS02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02510;old_locus_tag=D5F88_02515 NZ_QYTI01000022.1 Protein Homology CDS 2976 3650 . + 0 ID=cds-WP_016480525.1;Parent=gene-D5F88_RS02510;Dbxref=GenBank:WP_016480525.1;Name=WP_016480525.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054760.1;locus_tag=D5F88_RS02510;product=ERF family protein;protein_id=WP_016480525.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 3643 4059 . + . ID=gene-D5F88_RS02515;Name=ssb;gbkey=Gene;gene=ssb;gene_biotype=protein_coding;locus_tag=D5F88_RS02515;old_locus_tag=D5F88_02520 NZ_QYTI01000022.1 Protein Homology CDS 3643 4059 . + 0 ID=cds-WP_124773223.1;Parent=gene-D5F88_RS02515;Dbxref=GenBank:WP_124773223.1;Name=WP_124773223.1;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0006351,GO:0003697;gbkey=CDS;gene=ssb;go_function=single-stranded DNA binding|0003697||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA,DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019778239.1;locus_tag=D5F88_RS02515;product=single-stranded DNA-binding protein;protein_id=WP_124773223.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 4062 4265 . + . ID=gene-D5F88_RS02520;Name=D5F88_RS02520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02520;old_locus_tag=D5F88_02525 NZ_QYTI01000022.1 Protein Homology CDS 4062 4265 . + 0 ID=cds-WP_041165663.1;Parent=gene-D5F88_RS02520;Dbxref=GenBank:WP_041165663.1;Name=WP_041165663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000165746.1;locus_tag=D5F88_RS02520;product=hypothetical protein;protein_id=WP_041165663.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 4255 4731 . + . ID=gene-D5F88_RS02525;Name=D5F88_RS02525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02525;old_locus_tag=D5F88_02530 NZ_QYTI01000022.1 Protein Homology CDS 4255 4731 . + 0 ID=cds-WP_124773225.1;Parent=gene-D5F88_RS02525;Dbxref=GenBank:WP_124773225.1;Name=WP_124773225.1;Ontology_term=GO:0006281,GO:0006310,GO:0000287,GO:0000400,GO:0008821;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,four-way junction DNA binding|0000400||IEA,crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768474.1;locus_tag=D5F88_RS02525;product=RusA family crossover junction endodeoxyribonuclease;protein_id=WP_124773225.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 4721 5068 . + . ID=gene-D5F88_RS02530;Name=D5F88_RS02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02530;old_locus_tag=D5F88_02535 NZ_QYTI01000022.1 Protein Homology CDS 4721 5068 . + 0 ID=cds-WP_124773227.1;Parent=gene-D5F88_RS02530;Dbxref=GenBank:WP_124773227.1;Name=WP_124773227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000129025.1;locus_tag=D5F88_RS02530;product=hypothetical protein;protein_id=WP_124773227.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 5080 5367 . + . ID=gene-D5F88_RS02535;Name=D5F88_RS02535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02535;old_locus_tag=D5F88_02540 NZ_QYTI01000022.1 Protein Homology CDS 5080 5367 . + 0 ID=cds-WP_124773229.1;Parent=gene-D5F88_RS02535;Dbxref=GenBank:WP_124773229.1;Name=WP_124773229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011017872.1;locus_tag=D5F88_RS02535;product=nucleotide modification associated domain-containing protein;protein_id=WP_124773229.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 5351 5764 . + . ID=gene-D5F88_RS02540;Name=D5F88_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02540;old_locus_tag=D5F88_02545 NZ_QYTI01000022.1 Protein Homology CDS 5351 5764 . + 0 ID=cds-WP_124773231.1;Parent=gene-D5F88_RS02540;Dbxref=GenBank:WP_124773231.1;Name=WP_124773231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000614971.1;locus_tag=D5F88_RS02540;product=YopX family protein;protein_id=WP_124773231.1;transl_table=11 NZ_QYTI01000022.1 RefSeq gene 5761 5986 . + . ID=gene-D5F88_RS02545;Name=D5F88_RS02545;end_range=5986,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02545;old_locus_tag=D5F88_02550;partial=true NZ_QYTI01000022.1 Protein Homology CDS 5761 5986 . + 0 ID=cds-WP_124773233.1;Parent=gene-D5F88_RS02545;Dbxref=GenBank:WP_124773233.1;Name=WP_124773233.1;end_range=5986,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003052417.1;locus_tag=D5F88_RS02545;partial=true;product=hypothetical protein;protein_id=WP_124773233.1;transl_table=11 ##sequence-region NZ_QYTI01000023.1 1 60533 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000023.1 RefSeq region 1 60533 . + . ID=NZ_QYTI01000023.1:1..60533;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000023.1 RefSeq gene 67 1404 . + . ID=gene-D5F88_RS02550;Name=D5F88_RS02550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02550;old_locus_tag=D5F88_02555 NZ_QYTI01000023.1 Protein Homology CDS 67 1404 . + 0 ID=cds-WP_016503257.1;Parent=gene-D5F88_RS02550;Dbxref=GenBank:WP_016503257.1;Name=WP_016503257.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000786046.1;locus_tag=D5F88_RS02550;product=2-hydroxycarboxylate transporter family protein;protein_id=WP_016503257.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 1429 2592 . + . ID=gene-D5F88_RS02555;Name=D5F88_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02555;old_locus_tag=D5F88_02560 NZ_QYTI01000023.1 Protein Homology CDS 1429 2592 . + 0 ID=cds-WP_001293700.1;Parent=gene-D5F88_RS02555;Dbxref=GenBank:WP_001293700.1;Name=WP_001293700.1;Ontology_term=GO:0004471,GO:0004473,GO:0046872,GO:0051287;gbkey=CDS;go_function=malate dehydrogenase (decarboxylating) (NAD+) activity|0004471||IEA,malate dehydrogenase (decarboxylating) (NADP+) activity|0004473||IEA,metal ion binding|0046872||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649394.1;locus_tag=D5F88_RS02555;product=NAD(P)-dependent malic enzyme;protein_id=WP_001293700.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 2783 3127 . + . ID=gene-D5F88_RS02565;Name=D5F88_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02565;old_locus_tag=D5F88_02570 NZ_QYTI01000023.1 Protein Homology CDS 2783 3127 . + 0 ID=cds-WP_000286792.1;Parent=gene-D5F88_RS02565;Dbxref=GenBank:WP_000286792.1;Name=WP_000286792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000286789.1;locus_tag=D5F88_RS02565;product=thioredoxin domain-containing protein;protein_id=WP_000286792.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 3204 3545 . + . ID=gene-D5F88_RS02570;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=D5F88_RS02570;old_locus_tag=D5F88_02575 NZ_QYTI01000023.1 Protein Homology CDS 3204 3545 . + 0 ID=cds-WP_000056607.1;Parent=gene-D5F88_RS02570;Dbxref=GenBank:WP_000056607.1;Name=WP_000056607.1;gbkey=CDS;gene=yajC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000056605.1;locus_tag=D5F88_RS02570;product=preprotein translocase subunit YajC;protein_id=WP_000056607.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 3712 4464 . + . ID=gene-D5F88_RS02575;Name=D5F88_RS02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02575;old_locus_tag=D5F88_02580 NZ_QYTI01000023.1 Protein Homology CDS 3712 4464 . + 0 ID=cds-WP_016503256.1;Parent=gene-D5F88_RS02575;Dbxref=GenBank:WP_016503256.1;Name=WP_016503256.1;Ontology_term=GO:0016765;gbkey=CDS;go_function=transferase activity%2C transferring alkyl or aryl (other than methyl) groups|0016765||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000469562.1;locus_tag=D5F88_RS02575;product=isoprenyl transferase;protein_id=WP_016503256.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 4479 5273 . + . ID=gene-D5F88_RS02580;Name=D5F88_RS02580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02580;old_locus_tag=D5F88_02585 NZ_QYTI01000023.1 Protein Homology CDS 4479 5273 . + 0 ID=cds-WP_016503255.1;Parent=gene-D5F88_RS02580;Dbxref=GenBank:WP_016503255.1;Name=WP_016503255.1;Ontology_term=GO:0016024,GO:0004605,GO:0016772,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphatidate cytidylyltransferase activity|0004605||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=CDP-diacylglycerol biosynthetic process|0016024||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002275264.1;locus_tag=D5F88_RS02580;product=phosphatidate cytidylyltransferase;protein_id=WP_016503255.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 5304 6563 . + . ID=gene-D5F88_RS02585;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=D5F88_RS02585;old_locus_tag=D5F88_02590 NZ_QYTI01000023.1 Protein Homology CDS 5304 6563 . + 0 ID=cds-WP_000900651.1;Parent=gene-D5F88_RS02585;Dbxref=GenBank:WP_000900651.1;Name=WP_000900651.1;Ontology_term=GO:0006508,GO:0004222,GO:0016020;gbkey=CDS;gene=rseP;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000900646.1;locus_tag=D5F88_RS02585;product=RIP metalloprotease RseP;protein_id=WP_000900651.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 6655 8508 . + . ID=gene-D5F88_RS02590;Name=D5F88_RS02590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02590;old_locus_tag=D5F88_02595 NZ_QYTI01000023.1 Protein Homology CDS 6655 8508 . + 0 ID=cds-WP_086163493.1;Parent=gene-D5F88_RS02590;Dbxref=GenBank:WP_086163493.1;Name=WP_086163493.1;Ontology_term=GO:0006418,GO:0006433,GO:0000166,GO:0002161,GO:0004812,GO:0004827,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA deacylase activity|0002161||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,proline-tRNA ligase activity|0004827||IEA,ATP binding|0005524||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA,prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000814045.1;locus_tag=D5F88_RS02590;product=proline--tRNA ligase;protein_id=WP_086163493.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 8633 9217 . + . ID=gene-D5F88_RS02595;Name=D5F88_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02595;old_locus_tag=D5F88_02600 NZ_QYTI01000023.1 Protein Homology CDS 8633 9217 . + 0 ID=cds-WP_000842268.1;Parent=gene-D5F88_RS02595;Dbxref=GenBank:WP_000842268.1;Name=WP_000842268.1;Ontology_term=GO:0004040;gbkey=CDS;go_function=amidase activity|0004040||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000842267.1;locus_tag=D5F88_RS02595;product=glycoside hydrolase family 73 protein;protein_id=WP_000842268.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 9340 13746 . + . ID=gene-D5F88_RS02600;Name=D5F88_RS02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02600;old_locus_tag=D5F88_02605 NZ_QYTI01000023.1 Protein Homology CDS 9340 13746 . + 0 ID=cds-WP_001292134.1;Parent=gene-D5F88_RS02600;Dbxref=GenBank:WP_001292134.1;Name=WP_001292134.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0008408;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011889165.1;locus_tag=D5F88_RS02600;product=PolC-type DNA polymerase III;protein_id=WP_001292134.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 13873 14298 . + . ID=gene-D5F88_RS02605;Name=D5F88_RS02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02605;old_locus_tag=D5F88_02610 NZ_QYTI01000023.1 Protein Homology CDS 13873 14298 . + 0 ID=cds-WP_000526288.1;Parent=gene-D5F88_RS02605;Dbxref=GenBank:WP_000526288.1;Name=WP_000526288.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000526288.1;locus_tag=D5F88_RS02605;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_000526288.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 14431 15045 . + . ID=gene-D5F88_RS02610;Name=D5F88_RS02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02610;old_locus_tag=D5F88_02615 NZ_QYTI01000023.1 Protein Homology CDS 14431 15045 . + 0 ID=cds-WP_000008880.1;Parent=gene-D5F88_RS02610;Dbxref=GenBank:WP_000008880.1;Name=WP_000008880.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285012.1;locus_tag=D5F88_RS02610;product=nitroreductase family protein;protein_id=WP_000008880.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 15217 17088 . - . ID=gene-D5F88_RS02615;Name=D5F88_RS02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02615;old_locus_tag=D5F88_02620 NZ_QYTI01000023.1 Protein Homology CDS 15217 17088 . - 0 ID=cds-WP_016503252.1;Parent=gene-D5F88_RS02615;Dbxref=GenBank:WP_016503252.1;Name=WP_016503252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644057.1;locus_tag=D5F88_RS02615;product=transglutaminase domain-containing protein;protein_id=WP_016503252.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 17596 18234 . - . ID=gene-D5F88_RS02625;Name=D5F88_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02625;old_locus_tag=D5F88_02630 NZ_QYTI01000023.1 Protein Homology CDS 17596 18234 . - 0 ID=cds-WP_086163492.1;Parent=gene-D5F88_RS02625;Dbxref=GenBank:WP_086163492.1;Name=WP_086163492.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000597402.1;locus_tag=D5F88_RS02625;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_086163492.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 18246 19253 . - . ID=gene-D5F88_RS02630;Name=D5F88_RS02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02630;old_locus_tag=D5F88_02635 NZ_QYTI01000023.1 Protein Homology CDS 18246 19253 . - 0 ID=cds-WP_016503249.1;Parent=gene-D5F88_RS02630;Dbxref=GenBank:WP_016503249.1;Name=WP_016503249.1;Ontology_term=GO:0005975,GO:0019200,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503249.1;locus_tag=D5F88_RS02630;product=sugar kinase;protein_id=WP_016503249.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 19279 19917 . - . ID=gene-D5F88_RS02635;Name=dhuI;gbkey=Gene;gene=dhuI;gene_biotype=protein_coding;locus_tag=D5F88_RS02635;old_locus_tag=D5F88_02640 NZ_QYTI01000023.1 Protein Homology CDS 19279 19917 . - 0 ID=cds-WP_016481250.1;Parent=gene-D5F88_RS02635;Dbxref=GenBank:WP_016481250.1;Name=WP_016481250.1;gbkey=CDS;gene=dhuI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000684791.1;locus_tag=D5F88_RS02635;product=5-dehydro-4-deoxy-D-glucuronate isomerase DhuI;protein_id=WP_016481250.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 19934 20746 . - . ID=gene-D5F88_RS02640;Name=dhuD;gbkey=Gene;gene=dhuD;gene_biotype=protein_coding;locus_tag=D5F88_RS02640;old_locus_tag=D5F88_02645 NZ_QYTI01000023.1 Protein Homology CDS 19934 20746 . - 0 ID=cds-WP_000139173.1;Parent=gene-D5F88_RS02640;Dbxref=GenBank:WP_000139173.1;Name=WP_000139173.1;gbkey=CDS;gene=dhuD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000139169.1;locus_tag=D5F88_RS02640;product=monomeric 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase DhuD;protein_id=WP_000139173.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 21023 21457 . + . ID=gene-D5F88_RS02650;Name=D5F88_RS02650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02650;old_locus_tag=D5F88_02655 NZ_QYTI01000023.1 Protein Homology CDS 21023 21457 . + 0 ID=cds-WP_016503248.1;Parent=gene-D5F88_RS02650;Dbxref=GenBank:WP_016503248.1;Name=WP_016503248.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000590444.1;locus_tag=D5F88_RS02650;product=PTS sugar transporter subunit IIA;protein_id=WP_016503248.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 21460 22656 . + . ID=gene-D5F88_RS02655;Name=D5F88_RS02655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02655;old_locus_tag=D5F88_02660 NZ_QYTI01000023.1 Protein Homology CDS 21460 22656 . + 0 ID=cds-WP_016503247.1;Parent=gene-D5F88_RS02655;Dbxref=GenBank:WP_016503247.1;Name=WP_016503247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000975712.1;locus_tag=D5F88_RS02655;product=glycoside hydrolase family 88 protein;protein_id=WP_016503247.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 22711 23205 . + . ID=gene-D5F88_RS02660;Name=D5F88_RS02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02660;old_locus_tag=D5F88_02665 NZ_QYTI01000023.1 Protein Homology CDS 22711 23205 . + 0 ID=cds-WP_000718802.1;Parent=gene-D5F88_RS02660;Dbxref=GenBank:WP_000718802.1;Name=WP_000718802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000718799.1;locus_tag=D5F88_RS02660;product=PTS sugar transporter subunit IIB;protein_id=WP_000718802.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 23241 24107 . + . ID=gene-D5F88_RS02665;Name=D5F88_RS02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02665;old_locus_tag=D5F88_02670 NZ_QYTI01000023.1 Protein Homology CDS 23241 24107 . + 0 ID=cds-WP_000355267.1;Parent=gene-D5F88_RS02665;Dbxref=GenBank:WP_000355267.1;Name=WP_000355267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058783.1;locus_tag=D5F88_RS02665;product=PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC;protein_id=WP_000355267.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 24094 24909 . + . ID=gene-D5F88_RS02670;Name=D5F88_RS02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02670;old_locus_tag=D5F88_02675 NZ_QYTI01000023.1 Protein Homology CDS 24094 24909 . + 0 ID=cds-WP_000147945.1;Parent=gene-D5F88_RS02670;Dbxref=GenBank:WP_000147945.1;Name=WP_000147945.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000147944.1;locus_tag=D5F88_RS02670;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_000147945.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 24989 26893 . + . ID=gene-D5F88_RS02675;Name=D5F88_RS02675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02675;old_locus_tag=D5F88_02680 NZ_QYTI01000023.1 Protein Homology CDS 24989 26893 . + 0 ID=cds-WP_124749068.1;Parent=gene-D5F88_RS02675;Dbxref=GenBank:WP_124749068.1;Name=WP_124749068.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000654956.1;locus_tag=D5F88_RS02675;product=heparinase II/III domain-containing protein;protein_id=WP_124749068.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 26973 27974 . + . ID=gene-D5F88_RS02680;Name=D5F88_RS02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02680;old_locus_tag=D5F88_02685 NZ_QYTI01000023.1 Protein Homology CDS 26973 27974 . + 0 ID=cds-WP_000038817.1;Parent=gene-D5F88_RS02680;Dbxref=GenBank:WP_000038817.1;Name=WP_000038817.1;Ontology_term=GO:0006351,GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000038815.1;locus_tag=D5F88_RS02680;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000038817.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 28045 28659 . - . ID=gene-D5F88_RS02685;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=D5F88_RS02685;old_locus_tag=D5F88_02690 NZ_QYTI01000023.1 Protein Homology CDS 28045 28659 . - 0 ID=cds-WP_001272875.1;Parent=gene-D5F88_RS02685;Dbxref=GenBank:WP_001272875.1;Name=WP_001272875.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058782.1;locus_tag=D5F88_RS02685;product=peptide deformylase;protein_id=WP_001272875.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 28725 29369 . - . ID=gene-D5F88_RS02690;Name=D5F88_RS02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02690;old_locus_tag=D5F88_02695 NZ_QYTI01000023.1 Protein Homology CDS 28725 29369 . - 0 ID=cds-WP_000350701.1;Parent=gene-D5F88_RS02690;Dbxref=GenBank:WP_000350701.1;Name=WP_000350701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000350701.1;locus_tag=D5F88_RS02690;product=cyclic nucleotide-binding domain-containing protein;protein_id=WP_000350701.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 29481 30644 . + . ID=gene-D5F88_RS02700;Name=D5F88_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02700;old_locus_tag=D5F88_02705 NZ_QYTI01000023.1 Protein Homology CDS 29481 30644 . + 0 ID=cds-WP_016503245.1;Parent=gene-D5F88_RS02700;Dbxref=GenBank:WP_016503245.1;Name=WP_016503245.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000689132.1;locus_tag=D5F88_RS02700;product=MFS transporter;protein_id=WP_016503245.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 30690 31673 . - . ID=gene-D5F88_RS02705;Name=D5F88_RS02705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02705;old_locus_tag=D5F88_02710 NZ_QYTI01000023.1 Protein Homology CDS 30690 31673 . - 0 ID=cds-WP_124773235.1;Parent=gene-D5F88_RS02705;Dbxref=GenBank:WP_124773235.1;Name=WP_124773235.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000566098.1;locus_tag=D5F88_RS02705;product=Gfo/Idh/MocA family protein;protein_id=WP_124773235.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 31821 33716 . + . ID=gene-D5F88_RS02710;Name=D5F88_RS02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02710;old_locus_tag=D5F88_02715 NZ_QYTI01000023.1 Protein Homology CDS 31821 33716 . + 0 ID=cds-WP_086163491.1;Parent=gene-D5F88_RS02710;Dbxref=GenBank:WP_086163491.1;Name=WP_086163491.1;Ontology_term=GO:0008237,GO:0008270;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000599042.1;locus_tag=D5F88_RS02710;product=M13 family metallopeptidase;protein_id=WP_086163491.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 33766 34719 . - . ID=gene-D5F88_RS02715;Name=D5F88_RS02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02715;old_locus_tag=D5F88_02720 NZ_QYTI01000023.1 Protein Homology CDS 33766 34719 . - 0 ID=cds-WP_000737083.1;Parent=gene-D5F88_RS02715;Dbxref=GenBank:WP_000737083.1;Name=WP_000737083.1;Ontology_term=GO:0006508,GO:0008236,GO:0016787;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA,hydrolase activity|0016787||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000737092.1;locus_tag=D5F88_RS02715;product=S66 family peptidase;protein_id=WP_000737083.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 34886 35122 . + . ID=gene-D5F88_RS02720;Name=D5F88_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02720;old_locus_tag=D5F88_02725 NZ_QYTI01000023.1 Protein Homology CDS 34886 35122 . + 0 ID=cds-WP_000080855.1;Parent=gene-D5F88_RS02720;Dbxref=GenBank:WP_000080855.1;Name=WP_000080855.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000080857.1;locus_tag=D5F88_RS02720;product=hypothetical protein;protein_id=WP_000080855.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 35124 37193 . + . ID=gene-D5F88_RS02725;Name=D5F88_RS02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02725;old_locus_tag=D5F88_02730 NZ_QYTI01000023.1 Protein Homology CDS 35124 37193 . + 0 ID=cds-WP_000393092.1;Parent=gene-D5F88_RS02725;Dbxref=GenBank:WP_000393092.1;Name=WP_000393092.1;Ontology_term=GO:0006812,GO:1902600,GO:0015078,GO:0015297,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=proton transmembrane transporter activity|0015078||IEA,antiporter activity|0015297||IEA;go_process=monoatomic cation transport|0006812||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771255.1;locus_tag=D5F88_RS02725;product=cation:proton antiporter;protein_id=WP_000393092.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 37265 37335 . - . ID=gene-D5F88_RS02730;Name=D5F88_RS02730;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02730;old_locus_tag=D5F88_02735 NZ_QYTI01000023.1 tRNAscan-SE tRNA 37265 37335 . - . ID=rna-D5F88_RS02730;Parent=gene-D5F88_RS02730;anticodon=(pos:complement(37301..37303));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02730;product=tRNA-Cys NZ_QYTI01000023.1 tRNAscan-SE exon 37265 37335 . - . ID=exon-D5F88_RS02730-1;Parent=rna-D5F88_RS02730;anticodon=(pos:complement(37301..37303));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02730;product=tRNA-Cys NZ_QYTI01000023.1 RefSeq gene 37470 39002 . - . ID=gene-D5F88_RS02735;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=D5F88_RS02735;old_locus_tag=D5F88_02740 NZ_QYTI01000023.1 Protein Homology CDS 37470 39002 . - 0 ID=cds-WP_124773237.1;Parent=gene-D5F88_RS02735;Dbxref=GenBank:WP_124773237.1;Name=WP_124773237.1;Ontology_term=GO:0000302,GO:0008785,GO:0050660,GO:0051287;gbkey=CDS;gene=ahpF;go_function=alkyl hydroperoxide reductase activity|0008785||IEA,flavin adenine dinucleotide binding|0050660||IEA,NAD binding|0051287||IEA;go_process=response to reactive oxygen species|0000302||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000242134.1;locus_tag=D5F88_RS02735;product=alkyl hydroperoxide reductase subunit F;protein_id=WP_124773237.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 39020 39580 . - . ID=gene-D5F88_RS02740;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=D5F88_RS02740;old_locus_tag=D5F88_02745 NZ_QYTI01000023.1 Protein Homology CDS 39020 39580 . - 0 ID=cds-WP_016503239.1;Parent=gene-D5F88_RS02740;Dbxref=GenBank:WP_016503239.1;Name=WP_016503239.1;Ontology_term=GO:0006979,GO:0102039;gbkey=CDS;gene=ahpC;go_function=NADH-dependent peroxiredoxin activity|0102039||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002273221.1;locus_tag=D5F88_RS02740;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_016503239.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 39857 40627 . + . ID=gene-D5F88_RS02745;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=D5F88_RS02745;old_locus_tag=D5F88_02750 NZ_QYTI01000023.1 Protein Homology CDS 39857 40627 . + 0 ID=cds-WP_000268454.1;Parent=gene-D5F88_RS02745;Dbxref=GenBank:WP_000268454.1;Name=WP_000268454.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsB;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000268454.1;locus_tag=D5F88_RS02745;product=30S ribosomal protein S2;protein_id=WP_000268454.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 40720 41760 . + . ID=gene-D5F88_RS02750;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=D5F88_RS02750;old_locus_tag=D5F88_02755 NZ_QYTI01000023.1 Protein Homology CDS 40720 41760 . + 0 ID=cds-WP_000808080.1;Parent=gene-D5F88_RS02750;Dbxref=GenBank:WP_000808080.1;Name=WP_000808080.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000808079.1;locus_tag=D5F88_RS02750;product=translation elongation factor Ts;protein_id=WP_000808080.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 41920 42381 . - . ID=gene-D5F88_RS02755;Name=D5F88_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02755;old_locus_tag=D5F88_02760 NZ_QYTI01000023.1 Protein Homology CDS 41920 42381 . - 0 ID=cds-WP_001106578.1;Parent=gene-D5F88_RS02755;Dbxref=GenBank:WP_001106578.1;Name=WP_001106578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650709.1;locus_tag=D5F88_RS02755;product=COG2426 family protein;protein_id=WP_001106578.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 42554 43018 . + . ID=gene-D5F88_RS02760;Name=D5F88_RS02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02760;old_locus_tag=D5F88_02765 NZ_QYTI01000023.1 Protein Homology CDS 42554 43018 . + 0 ID=cds-WP_000985641.1;Parent=gene-D5F88_RS02760;Dbxref=GenBank:WP_000985641.1;Name=WP_000985641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000985642.1;locus_tag=D5F88_RS02760;product=CtsR family transcriptional regulator;protein_id=WP_000985641.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 43015 45462 . + . ID=gene-D5F88_RS02765;Name=D5F88_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02765;old_locus_tag=D5F88_02770 NZ_QYTI01000023.1 Protein Homology CDS 43015 45462 . + 0 ID=cds-WP_086163490.1;Parent=gene-D5F88_RS02765;Dbxref=GenBank:WP_086163490.1;Name=WP_086163490.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768440.1;locus_tag=D5F88_RS02765;product=ATP-dependent Clp protease ATP-binding subunit;protein_id=WP_086163490.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 45682 46173 . - . ID=gene-D5F88_RS02770;Name=D5F88_RS02770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02770;old_locus_tag=D5F88_02775 NZ_QYTI01000023.1 Protein Homology CDS 45682 46173 . - 0 ID=cds-WP_000586899.1;Parent=gene-D5F88_RS02770;Dbxref=GenBank:WP_000586899.1;Name=WP_000586899.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771630.1;locus_tag=D5F88_RS02770;product=GNAT family N-acetyltransferase;protein_id=WP_000586899.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 46187 46828 . - . ID=gene-D5F88_RS02775;Name=D5F88_RS02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02775;old_locus_tag=D5F88_02780 NZ_QYTI01000023.1 Protein Homology CDS 46187 46828 . - 0 ID=cds-WP_000909522.1;Parent=gene-D5F88_RS02775;Dbxref=GenBank:WP_000909522.1;Name=WP_000909522.1;Ontology_term=GO:0006139,GO:0005524,GO:0019136;gbkey=CDS;go_function=ATP binding|0005524||IEA,deoxynucleoside kinase activity|0019136||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019775268.1;locus_tag=D5F88_RS02775;product=deoxynucleoside kinase;protein_id=WP_000909522.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 46949 47926 . - . ID=gene-D5F88_RS02780;Name=dusB;gbkey=Gene;gene=dusB;gene_biotype=protein_coding;locus_tag=D5F88_RS02780;old_locus_tag=D5F88_02785 NZ_QYTI01000023.1 Protein Homology CDS 46949 47926 . - 0 ID=cds-WP_000192732.1;Parent=gene-D5F88_RS02780;Dbxref=GenBank:WP_000192732.1;Name=WP_000192732.1;Ontology_term=GO:0008033,GO:0017150,GO:0050660;gbkey=CDS;gene=dusB;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632282.1;locus_tag=D5F88_RS02780;product=tRNA dihydrouridine synthase DusB;protein_id=WP_000192732.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 47910 48785 . - . ID=gene-D5F88_RS02785;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=D5F88_RS02785;old_locus_tag=D5F88_02790 NZ_QYTI01000023.1 Protein Homology CDS 47910 48785 . - 0 ID=cds-WP_016503236.1;Parent=gene-D5F88_RS02785;Dbxref=GenBank:WP_016503236.1;Name=WP_016503236.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=hslO;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645314.1;locus_tag=D5F88_RS02785;product=Hsp33 family molecular chaperone HslO;protein_id=WP_016503236.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 48925 50181 . - . ID=gene-D5F88_RS02790;Name=D5F88_RS02790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02790;old_locus_tag=D5F88_02795 NZ_QYTI01000023.1 Protein Homology CDS 48925 50181 . - 0 ID=cds-WP_016481235.1;Parent=gene-D5F88_RS02790;Dbxref=GenBank:WP_016481235.1;Name=WP_016481235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001285398.1;locus_tag=D5F88_RS02790;product=toxic anion resistance protein;protein_id=WP_016481235.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 50178 50996 . - . ID=gene-D5F88_RS02795;Name=D5F88_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02795;old_locus_tag=D5F88_02800 NZ_QYTI01000023.1 Protein Homology CDS 50178 50996 . - 0 ID=cds-WP_016503235.1;Parent=gene-D5F88_RS02795;Dbxref=GenBank:WP_016503235.1;Name=WP_016503235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000239574.1;locus_tag=D5F88_RS02795;product=hypothetical protein;protein_id=WP_016503235.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 51120 53372 . - . ID=gene-D5F88_RS02800;Name=gshAB;gbkey=Gene;gene=gshAB;gene_biotype=protein_coding;locus_tag=D5F88_RS02800;old_locus_tag=D5F88_02805 NZ_QYTI01000023.1 Protein Homology CDS 51120 53372 . - 0 ID=cds-WP_016481233.1;Parent=gene-D5F88_RS02800;Dbxref=GenBank:WP_016481233.1;Name=WP_016481233.1;Ontology_term=GO:0006750,GO:0004357,GO:0005524,GO:0046872;gbkey=CDS;gene=gshAB;go_function=glutamate-cysteine ligase activity|0004357||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646239.1;locus_tag=D5F88_RS02800;product=bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB;protein_id=WP_016481233.1;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 53542 54216 . - . ID=gene-D5F88_RS02805;Name=D5F88_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02805;old_locus_tag=D5F88_02810 NZ_QYTI01000023.1 Protein Homology CDS 53542 54216 . - 0 ID=cds-WP_000356661.1;Parent=gene-D5F88_RS02805;Dbxref=GenBank:WP_000356661.1;Name=WP_000356661.1;Ontology_term=GO:0006355,GO:0007165,GO:0003677,GO:0003700,GO:0005515,GO:0140110;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,protein binding|0005515||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000356657.1;locus_tag=D5F88_RS02805;product=helix-turn-helix transcriptional regulator;protein_id=WP_000356661.1;transl_table=11 NZ_QYTI01000023.1 RefSeq pseudogene 54578 55596 . + . ID=gene-D5F88_RS02810;Name=D5F88_RS02810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02810;old_locus_tag=D5F88_02815;pseudo=true NZ_QYTI01000023.1 Protein Homology CDS 54578 55596 . + 0 ID=cds-D5F88_RS02810;Parent=gene-D5F88_RS02810;Note=frameshifted;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001021299.1;locus_tag=D5F88_RS02810;product=PTS sugar transporter subunit IIC;pseudo=true;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 55967 57259 . + . ID=gene-D5F88_RS02815;Name=D5F88_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02815;old_locus_tag=D5F88_02820 NZ_QYTI01000023.1 Protein Homology CDS 55967 57259 . + 0 ID=cds-WP_086163489.1;Parent=gene-D5F88_RS02815;Dbxref=GenBank:WP_086163489.1;Name=WP_086163489.1;Ontology_term=GO:0006164,GO:0004019,GO:0005525;gbkey=CDS;go_function=adenylosuccinate synthase activity|0004019||IEA,GTP binding|0005525||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000205037.1;locus_tag=D5F88_RS02815;product=adenylosuccinate synthase;protein_id=WP_086163489.1;transl_table=11 NZ_QYTI01000023.1 RefSeq pseudogene 57282 57576 . - . ID=gene-D5F88_RS02820;Name=D5F88_RS02820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02820;old_locus_tag=D5F88_02825;pseudo=true NZ_QYTI01000023.1 Protein Homology CDS 57282 57576 . - 0 ID=cds-D5F88_RS02820;Parent=gene-D5F88_RS02820;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000600818.1;locus_tag=D5F88_RS02820;product=hypothetical protein;pseudo=true;transl_table=11 NZ_QYTI01000023.1 RefSeq pseudogene 57735 58539 . - . ID=gene-D5F88_RS02825;Name=D5F88_RS02825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02825;old_locus_tag=D5F88_02830;pseudo=true NZ_QYTI01000023.1 Protein Homology CDS 57735 58539 . - 0 ID=cds-D5F88_RS02825;Parent=gene-D5F88_RS02825;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002987985.1;locus_tag=D5F88_RS02825;product=IS982 family transposase;pseudo=true;transl_table=11 NZ_QYTI01000023.1 RefSeq gene 58876 59493 . + . ID=gene-D5F88_RS02830;Name=D5F88_RS02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02830;old_locus_tag=D5F88_02835 NZ_QYTI01000023.1 Protein Homology CDS 58876 59493 . + 0 ID=cds-WP_001224528.1;Parent=gene-D5F88_RS02830;Dbxref=GenBank:WP_001224528.1;Name=WP_001224528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017772020.1;locus_tag=D5F88_RS02830;product=hypothetical protein;protein_id=WP_001224528.1;transl_table=11 NZ_QYTI01000023.1 RefSeq pseudogene 59627 60533 . + . ID=gene-D5F88_RS02835;Name=D5F88_RS02835;end_range=60533,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02835;old_locus_tag=D5F88_02840;partial=true;pseudo=true NZ_QYTI01000023.1 Protein Homology CDS 59627 60533 . + 0 ID=cds-D5F88_RS02835;Parent=gene-D5F88_RS02835;Note=frameshifted%3B incomplete%3B missing C-terminus;end_range=60533,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611311.1;locus_tag=D5F88_RS02835;partial=true;product=transposase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000024.1 1 2714 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000024.1 RefSeq region 1 2714 . + . ID=NZ_QYTI01000024.1:1..2714;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000024.1 RefSeq gene 31 146 . + . ID=gene-D5F88_RS02840;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=D5F88_RS02840;old_locus_tag=D5F88_02845 NZ_QYTI01000024.1 cmsearch rRNA 31 146 . + . ID=rna-D5F88_RS02840;Parent=gene-D5F88_RS02840;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS02840;product=5S ribosomal RNA NZ_QYTI01000024.1 cmsearch exon 31 146 . + . ID=exon-D5F88_RS02840-1;Parent=rna-D5F88_RS02840;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS02840;product=5S ribosomal RNA NZ_QYTI01000024.1 RefSeq gene 150 222 . + . ID=gene-D5F88_RS02845;Name=D5F88_RS02845;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02845;old_locus_tag=D5F88_02850 NZ_QYTI01000024.1 tRNAscan-SE tRNA 150 222 . + . ID=rna-D5F88_RS02845;Parent=gene-D5F88_RS02845;anticodon=(pos:183..185);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02845;product=tRNA-Val NZ_QYTI01000024.1 tRNAscan-SE exon 150 222 . + . ID=exon-D5F88_RS02845-1;Parent=rna-D5F88_RS02845;anticodon=(pos:183..185);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02845;product=tRNA-Val NZ_QYTI01000024.1 RefSeq gene 228 298 . + . ID=gene-D5F88_RS02850;Name=D5F88_RS02850;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02850;old_locus_tag=D5F88_02855 NZ_QYTI01000024.1 tRNAscan-SE tRNA 228 298 . + . ID=rna-D5F88_RS02850;Parent=gene-D5F88_RS02850;anticodon=(pos:260..262);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02850;product=tRNA-Gly NZ_QYTI01000024.1 tRNAscan-SE exon 228 298 . + . ID=exon-D5F88_RS02850-1;Parent=rna-D5F88_RS02850;anticodon=(pos:260..262);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02850;product=tRNA-Gly NZ_QYTI01000024.1 RefSeq gene 335 408 . + . ID=gene-D5F88_RS02855;Name=D5F88_RS02855;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02855;old_locus_tag=D5F88_02860 NZ_QYTI01000024.1 tRNAscan-SE tRNA 335 408 . + . ID=rna-D5F88_RS02855;Parent=gene-D5F88_RS02855;anticodon=(pos:369..371);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02855;product=tRNA-Ile NZ_QYTI01000024.1 tRNAscan-SE exon 335 408 . + . ID=exon-D5F88_RS02855-1;Parent=rna-D5F88_RS02855;anticodon=(pos:369..371);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02855;product=tRNA-Ile NZ_QYTI01000024.1 RefSeq gene 419 490 . + . ID=gene-D5F88_RS02860;Name=D5F88_RS02860;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS02860;old_locus_tag=D5F88_02865 NZ_QYTI01000024.1 tRNAscan-SE tRNA 419 490 . + . ID=rna-D5F88_RS02860;Parent=gene-D5F88_RS02860;anticodon=(pos:452..454);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02860;product=tRNA-Glu NZ_QYTI01000024.1 tRNAscan-SE exon 419 490 . + . ID=exon-D5F88_RS02860-1;Parent=rna-D5F88_RS02860;anticodon=(pos:452..454);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS02860;product=tRNA-Glu NZ_QYTI01000024.1 RefSeq gene 605 1138 . - . ID=gene-D5F88_RS02865;Name=ntdP;gbkey=Gene;gene=ntdP;gene_biotype=protein_coding;locus_tag=D5F88_RS02865;old_locus_tag=D5F88_02870 NZ_QYTI01000024.1 Protein Homology CDS 605 1138 . - 0 ID=cds-WP_001239184.1;Parent=gene-D5F88_RS02865;Dbxref=GenBank:WP_001239184.1;Name=WP_001239184.1;Ontology_term=GO:0009116,GO:0017110,GO:0017111;gbkey=CDS;gene=ntdP;go_function=nucleoside diphosphate phosphatase activity|0017110||IEA,ribonucleoside triphosphate phosphatase activity|0017111||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002949762.1;locus_tag=D5F88_RS02865;product=nucleoside tri-diphosphate phosphatase;protein_id=WP_001239184.1;transl_table=11 NZ_QYTI01000024.1 RefSeq gene 1222 1998 . - . ID=gene-D5F88_RS02870;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=D5F88_RS02870;old_locus_tag=D5F88_02875 NZ_QYTI01000024.1 Protein Homology CDS 1222 1998 . - 0 ID=cds-WP_000704975.1;Parent=gene-D5F88_RS02870;Dbxref=GenBank:WP_000704975.1;Name=WP_000704975.1;Ontology_term=GO:0006282;gbkey=CDS;gene=recX;go_process=regulation of DNA repair|0006282||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000704976.1;locus_tag=D5F88_RS02870;product=recombination regulator RecX;protein_id=WP_000704975.1;transl_table=11 NZ_QYTI01000024.1 RefSeq pseudogene 2097 2333 . + . ID=gene-D5F88_RS02875;Name=D5F88_RS02875;end_range=2333,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02875;old_locus_tag=D5F88_02880;partial=true;pseudo=true NZ_QYTI01000024.1 Protein Homology CDS 2097 2333 . + 0 ID=cds-D5F88_RS02875;Parent=gene-D5F88_RS02875;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2333,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480354.1;locus_tag=D5F88_RS02875;partial=true;product=TRAM domain-containing protein;pseudo=true;transl_table=11 NZ_QYTI01000024.1 RefSeq gene 2370 2714 . - . ID=gene-D5F88_RS02880;Name=D5F88_RS02880;end_range=2714,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02880;old_locus_tag=D5F88_02885;partial=true NZ_QYTI01000024.1 Protein Homology CDS 2370 2714 . - 0 ID=cds-WP_142997430.1;Parent=gene-D5F88_RS02880;Dbxref=GenBank:WP_142997430.1;Name=WP_142997430.1;Ontology_term=GO:0015074;end_range=2714,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS02880;partial=true;product=integrase core domain-containing protein;protein_id=WP_142997430.1;transl_table=11 ##sequence-region NZ_QYTI01000025.1 1 69995 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000025.1 RefSeq region 1 69995 . + . ID=NZ_QYTI01000025.1:1..69995;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000025.1 RefSeq gene 1 867 . - . ID=gene-D5F88_RS11905;Name=D5F88_RS11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11905;partial=true;start_range=.,1 NZ_QYTI01000025.1 Protein Homology CDS 1 867 . - 0 ID=cds-WP_260424970.1;Parent=gene-D5F88_RS11905;Dbxref=GenBank:WP_260424970.1;Name=WP_260424970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000733953.1;locus_tag=D5F88_RS11905;partial=true;product=hypothetical protein;protein_id=WP_260424970.1;start_range=.,1;transl_table=11 NZ_QYTI01000025.1 RefSeq pseudogene 1079 1273 . + . ID=gene-D5F88_RS02895;Name=D5F88_RS02895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS02895;old_locus_tag=D5F88_02900;partial=true;pseudo=true;start_range=.,1079 NZ_QYTI01000025.1 Protein Homology CDS 1079 1273 . + 0 ID=cds-D5F88_RS02895;Parent=gene-D5F88_RS02895;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011527759.1;locus_tag=D5F88_RS02895;partial=true;product=restriction endonuclease subunit S;pseudo=true;start_range=.,1079;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 1286 2866 . + . ID=gene-D5F88_RS02900;Name=D5F88_RS02900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02900;old_locus_tag=D5F88_02905 NZ_QYTI01000025.1 Protein Homology CDS 1286 2866 . + 0 ID=cds-WP_016503192.1;Parent=gene-D5F88_RS02900;Dbxref=GenBank:WP_016503192.1;Name=WP_016503192.1;Ontology_term=GO:0009307,GO:0003677,GO:0009007;gbkey=CDS;go_function=DNA binding|0003677||IEA,site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000818745.1;locus_tag=D5F88_RS02900;product=type I restriction-modification system subunit M;protein_id=WP_016503192.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 3156 3455 . + . ID=gene-D5F88_RS02905;Name=D5F88_RS02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02905;old_locus_tag=D5F88_02910 NZ_QYTI01000025.1 Protein Homology CDS 3156 3455 . + 0 ID=cds-WP_016503193.1;Parent=gene-D5F88_RS02905;Dbxref=GenBank:WP_016503193.1;Name=WP_016503193.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503193.1;locus_tag=D5F88_RS02905;product=YbaB/EbfC family nucleoid-associated protein;protein_id=WP_016503193.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 3616 4806 . + . ID=gene-D5F88_RS02910;Name=D5F88_RS02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02910;old_locus_tag=D5F88_02915 NZ_QYTI01000025.1 Protein Homology CDS 3616 4806 . + 0 ID=cds-WP_000244914.1;Parent=gene-D5F88_RS02910;Dbxref=GenBank:WP_000244914.1;Name=WP_000244914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000244913.1;locus_tag=D5F88_RS02910;product=SAM-dependent methyltransferase;protein_id=WP_000244914.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 4876 5601 . - . ID=gene-D5F88_RS02915;Name=D5F88_RS02915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02915;old_locus_tag=D5F88_02920 NZ_QYTI01000025.1 Protein Homology CDS 4876 5601 . - 0 ID=cds-WP_016503194.1;Parent=gene-D5F88_RS02915;Dbxref=GenBank:WP_016503194.1;Name=WP_016503194.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001292015.1;locus_tag=D5F88_RS02915;product=MerR family transcriptional regulator;protein_id=WP_016503194.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 5728 6315 . - . ID=gene-D5F88_RS02920;Name=D5F88_RS02920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02920;old_locus_tag=D5F88_02925 NZ_QYTI01000025.1 Protein Homology CDS 5728 6315 . - 0 ID=cds-WP_000811666.1;Parent=gene-D5F88_RS02920;Dbxref=GenBank:WP_000811666.1;Name=WP_000811666.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650205.1;locus_tag=D5F88_RS02920;product=3'-5' exonuclease;protein_id=WP_000811666.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 6359 6895 . - . ID=gene-D5F88_RS02925;Name=D5F88_RS02925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02925;old_locus_tag=D5F88_02930 NZ_QYTI01000025.1 Protein Homology CDS 6359 6895 . - 0 ID=cds-WP_000215421.1;Parent=gene-D5F88_RS02925;Dbxref=GenBank:WP_000215421.1;Name=WP_000215421.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017766787.1;locus_tag=D5F88_RS02925;product=DUF536 domain-containing protein;protein_id=WP_000215421.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 7030 8202 . + . ID=gene-D5F88_RS02930;Name=D5F88_RS02930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02930;old_locus_tag=D5F88_02935 NZ_QYTI01000025.1 Protein Homology CDS 7030 8202 . + 0 ID=cds-WP_000683564.1;Parent=gene-D5F88_RS02930;Dbxref=GenBank:WP_000683564.1;Name=WP_000683564.1;Ontology_term=GO:0050660,GO:0050661;gbkey=CDS;go_function=flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632253.1;locus_tag=D5F88_RS02930;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_000683564.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 8246 9028 . - . ID=gene-D5F88_RS02935;Name=D5F88_RS02935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02935;old_locus_tag=D5F88_02940 NZ_QYTI01000025.1 Protein Homology CDS 8246 9028 . - 0 ID=cds-WP_000338252.1;Parent=gene-D5F88_RS02935;Dbxref=GenBank:WP_000338252.1;Name=WP_000338252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001005780.1;locus_tag=D5F88_RS02935;product=DUF4931 domain-containing protein;protein_id=WP_000338252.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 9187 9456 . + . ID=gene-D5F88_RS02940;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=D5F88_RS02940;old_locus_tag=D5F88_02945 NZ_QYTI01000025.1 Protein Homology CDS 9187 9456 . + 0 ID=cds-WP_001085659.1;Parent=gene-D5F88_RS02940;Dbxref=GenBank:WP_001085659.1;Name=WP_001085659.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001085658.1;locus_tag=D5F88_RS02940;product=30S ribosomal protein S14;protein_id=WP_001085659.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 9818 10843 . - . ID=gene-D5F88_RS02950;Name=D5F88_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02950;old_locus_tag=D5F88_02955 NZ_QYTI01000025.1 Protein Homology CDS 9818 10843 . - 0 ID=cds-WP_016503195.1;Parent=gene-D5F88_RS02950;Dbxref=GenBank:WP_016503195.1;Name=WP_016503195.1;Ontology_term=GO:0006567,GO:0004793;gbkey=CDS;go_function=threonine aldolase activity|0004793||IEA;go_process=L-threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503195.1;locus_tag=D5F88_RS02950;product=threonine aldolase family protein;protein_id=WP_016503195.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 10962 11972 . - . ID=gene-D5F88_RS02955;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=D5F88_RS02955;old_locus_tag=D5F88_02960 NZ_QYTI01000025.1 Protein Homology CDS 10962 11972 . - 0 ID=cds-WP_016503196.1;Parent=gene-D5F88_RS02955;Dbxref=GenBank:WP_016503196.1;Name=WP_016503196.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaD;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000655088.1;locus_tag=D5F88_RS02955;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_016503196.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 12048 12455 . - . ID=gene-D5F88_RS02960;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=D5F88_RS02960;old_locus_tag=D5F88_02965 NZ_QYTI01000025.1 Protein Homology CDS 12048 12455 . - 0 ID=cds-WP_000445943.1;Parent=gene-D5F88_RS02960;Dbxref=GenBank:WP_000445943.1;Name=WP_000445943.1;Ontology_term=GO:0036211,GO:0042254,GO:0008999;gbkey=CDS;gene=rimI;go_function=protein-N-terminal-alanine acetyltransferase activity|0008999||IEA;go_process=protein modification process|0036211||IEA,ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643831.1;locus_tag=D5F88_RS02960;product=ribosomal protein S18-alanine N-acetyltransferase;protein_id=WP_000445943.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 12457 13149 . - . ID=gene-D5F88_RS02965;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=D5F88_RS02965;old_locus_tag=D5F88_02970 NZ_QYTI01000025.1 Protein Homology CDS 12457 13149 . - 0 ID=cds-WP_086163483.1;Parent=gene-D5F88_RS02965;Dbxref=GenBank:WP_086163483.1;Name=WP_086163483.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaB;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000978607.1;locus_tag=D5F88_RS02965;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=WP_086163483.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 13328 13558 . + . ID=gene-D5F88_RS02970;Name=D5F88_RS02970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02970;old_locus_tag=D5F88_02975 NZ_QYTI01000025.1 Protein Homology CDS 13328 13558 . + 0 ID=cds-WP_000639570.1;Parent=gene-D5F88_RS02970;Dbxref=GenBank:WP_000639570.1;Name=WP_000639570.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000639570.1;locus_tag=D5F88_RS02970;product=DNA-dependent RNA polymerase subunit epsilon;protein_id=WP_000639570.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 13612 15291 . + . ID=gene-D5F88_RS02975;Name=rnjA;gbkey=Gene;gene=rnjA;gene_biotype=protein_coding;locus_tag=D5F88_RS02975;old_locus_tag=D5F88_02980 NZ_QYTI01000025.1 Protein Homology CDS 13612 15291 . + 0 ID=cds-WP_000065493.1;Parent=gene-D5F88_RS02975;Dbxref=GenBank:WP_000065493.1;Name=WP_000065493.1;gbkey=CDS;gene=rnjA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632256.1;locus_tag=D5F88_RS02975;product=ribonuclease J1;protein_id=WP_000065493.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 15453 15962 . - . ID=gene-D5F88_RS02980;Name=D5F88_RS02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02980;old_locus_tag=D5F88_02985 NZ_QYTI01000025.1 Protein Homology CDS 15453 15962 . - 0 ID=cds-WP_016503198.1;Parent=gene-D5F88_RS02980;Dbxref=GenBank:WP_016503198.1;Name=WP_016503198.1;Ontology_term=GO:0004040,GO:0042834;gbkey=CDS;go_function=amidase activity|0004040||IEA,peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000392201.1;locus_tag=D5F88_RS02980;product=CHAP domain-containing protein;protein_id=WP_016503198.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 16110 17456 . - . ID=gene-D5F88_RS02985;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=D5F88_RS02985;old_locus_tag=D5F88_02990 NZ_QYTI01000025.1 Protein Homology CDS 16110 17456 . - 0 ID=cds-WP_016503199.1;Parent=gene-D5F88_RS02985;Dbxref=GenBank:WP_016503199.1;Name=WP_016503199.1;Ontology_term=GO:0006542,GO:0004356;gbkey=CDS;gene=glnA;go_function=glutamine synthetase activity|0004356||IEA;go_process=glutamine biosynthetic process|0006542||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012997923.1;locus_tag=D5F88_RS02985;product=type I glutamate--ammonia ligase;protein_id=WP_016503199.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 17490 17861 . - . ID=gene-D5F88_RS02990;Name=D5F88_RS02990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02990;old_locus_tag=D5F88_02995 NZ_QYTI01000025.1 Protein Homology CDS 17490 17861 . - 0 ID=cds-WP_000664338.1;Parent=gene-D5F88_RS02990;Dbxref=GenBank:WP_000664338.1;Name=WP_000664338.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768344.1;locus_tag=D5F88_RS02990;product=MerR family transcriptional regulator;protein_id=WP_000664338.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 17941 18480 . - . ID=gene-D5F88_RS02995;Name=D5F88_RS02995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS02995;old_locus_tag=D5F88_03000 NZ_QYTI01000025.1 Protein Homology CDS 17941 18480 . - 0 ID=cds-WP_016503200.1;Parent=gene-D5F88_RS02995;Dbxref=GenBank:WP_016503200.1;Name=WP_016503200.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000854122.1;locus_tag=D5F88_RS02995;product=FUSC family protein;protein_id=WP_016503200.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 18742 19938 . - . ID=gene-D5F88_RS03000;Name=D5F88_RS03000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03000;old_locus_tag=D5F88_03005 NZ_QYTI01000025.1 Protein Homology CDS 18742 19938 . - 0 ID=cds-WP_001096753.1;Parent=gene-D5F88_RS03000;Dbxref=GenBank:WP_001096753.1;Name=WP_001096753.1;Ontology_term=GO:0006096,GO:0004618,GO:0005524,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=phosphoglycerate kinase activity|0004618||IEA,ATP binding|0005524||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001096748.1;locus_tag=D5F88_RS03000;product=phosphoglycerate kinase;protein_id=WP_001096753.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 20073 20942 . - . ID=gene-D5F88_RS03005;Name=D5F88_RS03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03005;old_locus_tag=D5F88_03010 NZ_QYTI01000025.1 Protein Homology CDS 20073 20942 . - 0 ID=cds-WP_124773240.1;Parent=gene-D5F88_RS03005;Dbxref=GenBank:WP_124773240.1;Name=WP_124773240.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000858925.1;locus_tag=D5F88_RS03005;product=5'-nucleotidase%2C lipoprotein e(P4) family;protein_id=WP_124773240.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 21151 22161 . - . ID=gene-D5F88_RS03010;Name=gap;gbkey=Gene;gene=gap;gene_biotype=protein_coding;locus_tag=D5F88_RS03010;old_locus_tag=D5F88_03015 NZ_QYTI01000025.1 Protein Homology CDS 21151 22161 . - 0 ID=cds-WP_000260656.1;Parent=gene-D5F88_RS03010;Dbxref=GenBank:WP_000260656.1;Name=WP_000260656.1;Ontology_term=GO:0006006,GO:0016620,GO:0050661,GO:0051287;gbkey=CDS;gene=gap;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,NADP binding|0050661||IEA,NAD binding|0051287||IEA;go_process=glucose metabolic process|0006006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008090210.1;locus_tag=D5F88_RS03010;product=type I glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_000260656.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 22365 24443 . - . ID=gene-D5F88_RS03015;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=D5F88_RS03015;old_locus_tag=D5F88_03020 NZ_QYTI01000025.1 Protein Homology CDS 22365 24443 . - 0 ID=cds-WP_000090323.1;Parent=gene-D5F88_RS03015;Dbxref=GenBank:WP_000090323.1;Name=WP_000090323.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000090325.1;locus_tag=D5F88_RS03015;product=elongation factor G;protein_id=WP_000090323.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 24598 25068 . - . ID=gene-D5F88_RS03020;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=D5F88_RS03020;old_locus_tag=D5F88_03025 NZ_QYTI01000025.1 Protein Homology CDS 24598 25068 . - 0 ID=cds-WP_000087842.1;Parent=gene-D5F88_RS03020;Dbxref=GenBank:WP_000087842.1;Name=WP_000087842.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsG;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011285383.1;locus_tag=D5F88_RS03020;product=30S ribosomal protein S7;protein_id=WP_000087842.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 25090 25503 . - . ID=gene-D5F88_RS03025;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=D5F88_RS03025;old_locus_tag=D5F88_03030 NZ_QYTI01000025.1 Protein Homology CDS 25090 25503 . - 0 ID=cds-WP_001142328.1;Parent=gene-D5F88_RS03025;Dbxref=GenBank:WP_001142328.1;Name=WP_001142328.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsL;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001142328.1;locus_tag=D5F88_RS03025;product=30S ribosomal protein S12;protein_id=WP_001142328.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 25722 26534 . - . ID=gene-D5F88_RS03035;Name=purR;gbkey=Gene;gene=purR;gene_biotype=protein_coding;locus_tag=D5F88_RS03035;old_locus_tag=D5F88_03040 NZ_QYTI01000025.1 Protein Homology CDS 25722 26534 . - 0 ID=cds-WP_000776878.1;Parent=gene-D5F88_RS03035;Dbxref=GenBank:WP_000776878.1;Name=WP_000776878.1;Ontology_term=GO:0006355,GO:0009116,GO:0045892,GO:0045982,GO:0003677;gbkey=CDS;gene=purR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,nucleoside metabolic process|0009116||IEA,negative regulation of DNA-templated transcription|0045892||IEA,negative regulation of purine nucleobase metabolic process|0045982||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018376136.1;locus_tag=D5F88_RS03035;product=pur operon repressor;protein_id=WP_000776878.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 26631 27572 . - . ID=gene-D5F88_RS03040;Name=D5F88_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03040;old_locus_tag=D5F88_03045 NZ_QYTI01000025.1 Protein Homology CDS 26631 27572 . - 0 ID=cds-WP_000700694.1;Parent=gene-D5F88_RS03040;Dbxref=GenBank:WP_000700694.1;Name=WP_000700694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771182.1;locus_tag=D5F88_RS03040;product=3'-5' exoribonuclease YhaM family protein;protein_id=WP_000700694.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 27562 28836 . - . ID=gene-D5F88_RS03045;Name=rmuC;gbkey=Gene;gene=rmuC;gene_biotype=protein_coding;locus_tag=D5F88_RS03045;old_locus_tag=D5F88_03050 NZ_QYTI01000025.1 Protein Homology CDS 27562 28836 . - 0 ID=cds-WP_016503201.1;Parent=gene-D5F88_RS03045;Dbxref=GenBank:WP_016503201.1;Name=WP_016503201.1;gbkey=CDS;gene=rmuC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000960179.1;locus_tag=D5F88_RS03045;product=DNA recombination protein RmuC;protein_id=WP_016503201.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 28838 29470 . - . ID=gene-D5F88_RS03050;Name=D5F88_RS03050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03050;old_locus_tag=D5F88_03055 NZ_QYTI01000025.1 Protein Homology CDS 28838 29470 . - 0 ID=cds-WP_000160925.1;Parent=gene-D5F88_RS03050;Dbxref=GenBank:WP_000160925.1;Name=WP_000160925.1;Ontology_term=GO:0006772,GO:0004788;gbkey=CDS;go_function=thiamine diphosphokinase activity|0004788||IEA;go_process=thiamine metabolic process|0006772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645634.1;locus_tag=D5F88_RS03050;product=thiamine diphosphokinase;protein_id=WP_000160925.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 29463 30125 . - . ID=gene-D5F88_RS03055;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=D5F88_RS03055;old_locus_tag=D5F88_03060 NZ_QYTI01000025.1 Protein Homology CDS 29463 30125 . - 0 ID=cds-WP_000106178.1;Parent=gene-D5F88_RS03055;Dbxref=GenBank:WP_000106178.1;Name=WP_000106178.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000106179.1;locus_tag=D5F88_RS03055;product=ribulose-phosphate 3-epimerase;protein_id=WP_000106178.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 30132 31004 . - . ID=gene-D5F88_RS03060;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=D5F88_RS03060;old_locus_tag=D5F88_03065 NZ_QYTI01000025.1 Protein Homology CDS 30132 31004 . - 0 ID=cds-WP_016503202.1;Parent=gene-D5F88_RS03060;Dbxref=GenBank:WP_016503202.1;Name=WP_016503202.1;Ontology_term=GO:0006412,GO:0003924,GO:0005525,GO:0043022;gbkey=CDS;gene=rsgA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768211.1;locus_tag=D5F88_RS03060;product=ribosome small subunit-dependent GTPase A;protein_id=WP_016503202.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 31160 32011 . - . ID=gene-D5F88_RS03065;Name=D5F88_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03065;old_locus_tag=D5F88_03070 NZ_QYTI01000025.1 Protein Homology CDS 31160 32011 . - 0 ID=cds-WP_000959497.1;Parent=gene-D5F88_RS03065;Dbxref=GenBank:WP_000959497.1;Name=WP_000959497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000959505.1;locus_tag=D5F88_RS03065;product=putative RNA methyltransferase;protein_id=WP_000959497.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 32015 32887 . - . ID=gene-D5F88_RS03070;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=D5F88_RS03070;old_locus_tag=D5F88_03075 NZ_QYTI01000025.1 Protein Homology CDS 32015 32887 . - 0 ID=cds-WP_016503203.1;Parent=gene-D5F88_RS03070;Dbxref=GenBank:WP_016503203.1;Name=WP_016503203.1;Ontology_term=GO:0000154,GO:0006364,GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;go_process=rRNA modification|0000154||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018030634.1;locus_tag=D5F88_RS03070;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=WP_016503203.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 32915 33364 . - . ID=gene-D5F88_RS03075;Name=D5F88_RS03075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03075;old_locus_tag=D5F88_03080 NZ_QYTI01000025.1 Protein Homology CDS 32915 33364 . - 0 ID=cds-WP_016503204.1;Parent=gene-D5F88_RS03075;Dbxref=GenBank:WP_016503204.1;Name=WP_016503204.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000280758.1;locus_tag=D5F88_RS03075;product=HIT family protein;protein_id=WP_016503204.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 33368 33934 . - . ID=gene-D5F88_RS03080;Name=rnmV;gbkey=Gene;gene=rnmV;gene_biotype=protein_coding;locus_tag=D5F88_RS03080;old_locus_tag=D5F88_03085 NZ_QYTI01000025.1 Protein Homology CDS 33368 33934 . - 0 ID=cds-WP_016503205.1;Parent=gene-D5F88_RS03080;Dbxref=GenBank:WP_016503205.1;Name=WP_016503205.1;Ontology_term=GO:0006364,GO:0043822;gbkey=CDS;gene=rnmV;go_function=ribonuclease M5 activity|0043822||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000717750.1;locus_tag=D5F88_RS03080;product=ribonuclease M5;protein_id=WP_016503205.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 33921 34703 . - . ID=gene-D5F88_RS03085;Name=D5F88_RS03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03085;old_locus_tag=D5F88_03090 NZ_QYTI01000025.1 Protein Homology CDS 33921 34703 . - 0 ID=cds-WP_016503206.1;Parent=gene-D5F88_RS03085;Dbxref=GenBank:WP_016503206.1;Name=WP_016503206.1;Ontology_term=GO:0004536,GO:0016788,GO:0046872;gbkey=CDS;go_function=DNA nuclease activity|0004536||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000590333.1;locus_tag=D5F88_RS03085;product=TatD family hydrolase;protein_id=WP_016503206.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 34885 35166 . - . ID=gene-D5F88_RS03090;Name=D5F88_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03090;old_locus_tag=D5F88_03095 NZ_QYTI01000025.1 Protein Homology CDS 34885 35166 . - 0 ID=cds-WP_000055643.1;Parent=gene-D5F88_RS03090;Dbxref=GenBank:WP_000055643.1;Name=WP_000055643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000055648.1;locus_tag=D5F88_RS03090;product=hypothetical protein;protein_id=WP_000055643.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 35176 35568 . - . ID=gene-D5F88_RS03095;Name=D5F88_RS03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03095;old_locus_tag=D5F88_03100 NZ_QYTI01000025.1 Protein Homology CDS 35176 35568 . - 0 ID=cds-WP_001173857.1;Parent=gene-D5F88_RS03095;Dbxref=GenBank:WP_001173857.1;Name=WP_001173857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644028.1;locus_tag=D5F88_RS03095;product=hypothetical protein;protein_id=WP_001173857.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 35559 36851 . - . ID=gene-D5F88_RS03100;Name=D5F88_RS03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03100;old_locus_tag=D5F88_03105 NZ_QYTI01000025.1 Protein Homology CDS 35559 36851 . - 0 ID=cds-WP_016503212.1;Parent=gene-D5F88_RS03100;Dbxref=GenBank:WP_016503212.1;Name=WP_016503212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647499.1;locus_tag=D5F88_RS03100;product=Mbeg1-like protein;protein_id=WP_016503212.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 36851 37243 . - . ID=gene-D5F88_RS03105;Name=D5F88_RS03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03105;old_locus_tag=D5F88_03110 NZ_QYTI01000025.1 Protein Homology CDS 36851 37243 . - 0 ID=cds-WP_000835881.1;Parent=gene-D5F88_RS03105;Dbxref=GenBank:WP_000835881.1;Name=WP_000835881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000835879.1;locus_tag=D5F88_RS03105;product=DUF1310 domain-containing protein;protein_id=WP_000835881.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 37418 38680 . - . ID=gene-D5F88_RS03110;Name=dltD;gbkey=Gene;gene=dltD;gene_biotype=protein_coding;locus_tag=D5F88_RS03110;old_locus_tag=D5F88_03115 NZ_QYTI01000025.1 Protein Homology CDS 37418 38680 . - 0 ID=cds-WP_016503215.1;Parent=gene-D5F88_RS03110;Dbxref=GenBank:WP_016503215.1;Name=WP_016503215.1;Ontology_term=GO:0070394;gbkey=CDS;gene=dltD;go_process=lipoteichoic acid metabolic process|0070394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503215.1;locus_tag=D5F88_RS03110;product=D-alanyl-lipoteichoic acid biosynthesis protein DltD;protein_id=WP_016503215.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 38673 38912 . - . ID=gene-D5F88_RS03115;Name=dltC;gbkey=Gene;gene=dltC;gene_biotype=protein_coding;locus_tag=D5F88_RS03115;old_locus_tag=D5F88_03120 NZ_QYTI01000025.1 Protein Homology CDS 38673 38912 . - 0 ID=cds-WP_000351975.1;Parent=gene-D5F88_RS03115;Dbxref=GenBank:WP_000351975.1;Name=WP_000351975.1;Ontology_term=GO:0019350,GO:0036370;gbkey=CDS;gene=dltC;go_function=D-alanyl carrier activity|0036370||IEA;go_process=teichoic acid biosynthetic process|0019350||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005591431.1;locus_tag=D5F88_RS03115;product=D-alanine--poly(phosphoribitol) ligase subunit DltC;protein_id=WP_000351975.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 38927 40192 . - . ID=gene-D5F88_RS03120;Name=dltB;gbkey=Gene;gene=dltB;gene_biotype=protein_coding;locus_tag=D5F88_RS03120;old_locus_tag=D5F88_03125 NZ_QYTI01000025.1 Protein Homology CDS 38927 40192 . - 0 ID=cds-WP_086163486.1;Parent=gene-D5F88_RS03120;Dbxref=GenBank:WP_086163486.1;Name=WP_086163486.1;Ontology_term=GO:0070395,GO:0016746;gbkey=CDS;gene=dltB;go_function=acyltransferase activity|0016746||IEA;go_process=lipoteichoic acid biosynthetic process|0070395||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650936.1;locus_tag=D5F88_RS03120;product=D-alanyl-lipoteichoic acid biosynthesis protein DltB;protein_id=WP_086163486.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 40189 41724 . - . ID=gene-D5F88_RS03125;Name=dltA;gbkey=Gene;gene=dltA;gene_biotype=protein_coding;locus_tag=D5F88_RS03125;old_locus_tag=D5F88_03130 NZ_QYTI01000025.1 Protein Homology CDS 40189 41724 . - 0 ID=cds-WP_000581010.1;Parent=gene-D5F88_RS03125;Dbxref=GenBank:WP_000581010.1;Name=WP_000581010.1;Ontology_term=GO:0019350,GO:0005524,GO:0047473;gbkey=CDS;gene=dltA;go_function=ATP binding|0005524||IEA,D-alanine [D-alanyl carrier protein] ligase activity|0047473||IEA;go_process=teichoic acid biosynthetic process|0019350||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000581011.1;locus_tag=D5F88_RS03125;product=D-alanine--poly(phosphoribitol) ligase subunit DltA;protein_id=WP_000581010.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 41737 41859 . - . ID=gene-D5F88_RS03130;Name=D5F88_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03130;old_locus_tag=D5F88_03135 NZ_QYTI01000025.1 Protein Homology CDS 41737 41859 . - 0 ID=cds-WP_000806141.1;Parent=gene-D5F88_RS03130;Dbxref=GenBank:WP_000806141.1;Name=WP_000806141.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000806141.1;locus_tag=D5F88_RS03130;product=teichoic acid D-Ala incorporation-associated protein DltX;protein_id=WP_000806141.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 41870 43057 . - . ID=gene-D5F88_RS03135;Name=dltS;gbkey=Gene;gene=dltS;gene_biotype=protein_coding;locus_tag=D5F88_RS03135;old_locus_tag=D5F88_03140 NZ_QYTI01000025.1 Protein Homology CDS 41870 43057 . - 0 ID=cds-WP_000490537.1;Parent=gene-D5F88_RS03135;Dbxref=GenBank:WP_000490537.1;Name=WP_000490537.1;gbkey=CDS;gene=dltS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000490537.1;locus_tag=D5F88_RS03135;product=two-component system sensor histidine kinase DltS;protein_id=WP_000490537.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 43057 43731 . - . ID=gene-D5F88_RS03140;Name=dltR;gbkey=Gene;gene=dltR;gene_biotype=protein_coding;locus_tag=D5F88_RS03140;old_locus_tag=D5F88_03145 NZ_QYTI01000025.1 Protein Homology CDS 43057 43731 . - 0 ID=cds-WP_016503217.1;Parent=gene-D5F88_RS03140;Dbxref=GenBank:WP_016503217.1;Name=WP_016503217.1;gbkey=CDS;gene=dltR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001238594.1;locus_tag=D5F88_RS03140;product=two-component system response regulator DltR;protein_id=WP_016503217.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 44087 44221 . - . ID=gene-D5F88_RS03145;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=D5F88_RS03145;old_locus_tag=D5F88_03150 NZ_QYTI01000025.1 Protein Homology CDS 44087 44221 . - 0 ID=cds-WP_000831903.1;Parent=gene-D5F88_RS03145;Dbxref=GenBank:WP_000831903.1;Name=WP_000831903.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000831903.1;locus_tag=D5F88_RS03145;product=50S ribosomal protein L34;protein_id=WP_000831903.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 44405 45760 . - . ID=gene-D5F88_RS03150;Name=D5F88_RS03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03150;old_locus_tag=D5F88_03155 NZ_QYTI01000025.1 Protein Homology CDS 44405 45760 . - 0 ID=cds-WP_016503218.1;Parent=gene-D5F88_RS03150;Dbxref=GenBank:WP_016503218.1;Name=WP_016503218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647765.1;locus_tag=D5F88_RS03150;product=YjiH family protein;protein_id=WP_016503218.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 46006 47733 . - . ID=gene-D5F88_RS03155;Name=D5F88_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03155;old_locus_tag=D5F88_03160 NZ_QYTI01000025.1 Protein Homology CDS 46006 47733 . - 0 ID=cds-WP_016503219.1;Parent=gene-D5F88_RS03155;Dbxref=GenBank:WP_016503219.1;Name=WP_016503219.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000429367.1;locus_tag=D5F88_RS03155;product=ABC transporter permease/substrate binding protein;protein_id=WP_016503219.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 47752 48975 . - . ID=gene-D5F88_RS03160;Name=D5F88_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03160;old_locus_tag=D5F88_03165 NZ_QYTI01000025.1 Protein Homology CDS 47752 48975 . - 0 ID=cds-WP_000181804.1;Parent=gene-D5F88_RS03160;Dbxref=GenBank:WP_000181804.1;Name=WP_000181804.1;Ontology_term=GO:0015697,GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=quaternary ammonium group transport|0015697||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647591.1;locus_tag=D5F88_RS03160;product=quaternary amine ABC transporter ATP-binding protein;protein_id=WP_000181804.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 49352 51730 . - . ID=gene-D5F88_RS03170;Name=D5F88_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03170;old_locus_tag=D5F88_03175 NZ_QYTI01000025.1 Protein Homology CDS 49352 51730 . - 0 ID=cds-WP_086163487.1;Parent=gene-D5F88_RS03170;Dbxref=GenBank:WP_086163487.1;Name=WP_086163487.1;Ontology_term=GO:0005975,GO:0016832,GO:0030976;gbkey=CDS;go_function=aldehyde-lyase activity|0016832||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001288401.1;locus_tag=D5F88_RS03170;product=phosphoketolase family protein;protein_id=WP_086163487.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 51820 52911 . - . ID=gene-D5F88_RS03175;Name=ulaG;gbkey=Gene;gene=ulaG;gene_biotype=protein_coding;locus_tag=D5F88_RS03175;old_locus_tag=D5F88_03180 NZ_QYTI01000025.1 Protein Homology CDS 51820 52911 . - 0 ID=cds-WP_001134214.1;Parent=gene-D5F88_RS03175;Dbxref=GenBank:WP_001134214.1;Name=WP_001134214.1;Ontology_term=GO:0019854,GO:0030145,GO:0035460;gbkey=CDS;gene=ulaG;go_function=manganese ion binding|0030145||IEA,L-ascorbate 6-phosphate lactonase activity|0035460||IEA;go_process=L-ascorbic acid catabolic process|0019854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001863918.1;locus_tag=D5F88_RS03175;product=L-ascorbate 6-phosphate lactonase;protein_id=WP_001134214.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 53228 54907 . - . ID=gene-D5F88_RS03180;Name=D5F88_RS03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03180;old_locus_tag=D5F88_03185 NZ_QYTI01000025.1 Protein Homology CDS 53228 54907 . - 0 ID=cds-WP_016503222.1;Parent=gene-D5F88_RS03180;Dbxref=GenBank:WP_016503222.1;Name=WP_016503222.1;Ontology_term=GO:0006355,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000584682.1;locus_tag=D5F88_RS03180;product=BglG family transcription antiterminator;protein_id=WP_016503222.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 54973 55734 . - . ID=gene-D5F88_RS03185;Name=D5F88_RS03185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03185;old_locus_tag=D5F88_03190 NZ_QYTI01000025.1 Protein Homology CDS 54973 55734 . - 0 ID=cds-WP_000806819.1;Parent=gene-D5F88_RS03185;Dbxref=GenBank:WP_000806819.1;Name=WP_000806819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000806825.1;locus_tag=D5F88_RS03185;product=hypothetical protein;protein_id=WP_000806819.1;transl_table=11 NZ_QYTI01000025.1 RefSeq pseudogene 55754 57269 . - . ID=gene-D5F88_RS03190;Name=D5F88_RS03190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03190;old_locus_tag=D5F88_03195;pseudo=true NZ_QYTI01000025.1 Protein Homology CDS 55754 57269 . - 0 ID=cds-D5F88_RS03190;Parent=gene-D5F88_RS03190;Note=frameshifted;Ontology_term=GO:0016310,GO:0005524,GO:0019200;gbkey=CDS;go_function=ATP binding|0005524||IEA,carbohydrate kinase activity|0019200||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000222906.1;locus_tag=D5F88_RS03190;product=FGGY-family carbohydrate kinase;pseudo=true;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 57335 58324 . - . ID=gene-D5F88_RS03195;Name=D5F88_RS03195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03195;old_locus_tag=D5F88_03200 NZ_QYTI01000025.1 Protein Homology CDS 57335 58324 . - 0 ID=cds-WP_016503225.1;Parent=gene-D5F88_RS03195;Dbxref=GenBank:WP_016503225.1;Name=WP_016503225.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503225.1;locus_tag=D5F88_RS03195;product=amidohydrolase family protein;protein_id=WP_016503225.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 58346 59797 . - . ID=gene-D5F88_RS03200;Name=D5F88_RS03200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03200;old_locus_tag=D5F88_03205 NZ_QYTI01000025.1 Protein Homology CDS 58346 59797 . - 0 ID=cds-WP_000888345.1;Parent=gene-D5F88_RS03200;Dbxref=GenBank:WP_000888345.1;Name=WP_000888345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000888340.1;locus_tag=D5F88_RS03200;product=PTS galactitol transporter subunit IIC;protein_id=WP_000888345.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 59895 60851 . - . ID=gene-D5F88_RS03205;Name=D5F88_RS03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03205;old_locus_tag=D5F88_03210 NZ_QYTI01000025.1 Protein Homology CDS 59895 60851 . - 0 ID=cds-WP_000358400.1;Parent=gene-D5F88_RS03205;Dbxref=GenBank:WP_000358400.1;Name=WP_000358400.1;Ontology_term=GO:0051287;gbkey=CDS;go_function=NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017766789.1;locus_tag=D5F88_RS03205;product=NAD(P)-dependent oxidoreductase;protein_id=WP_000358400.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 60870 61889 . - . ID=gene-D5F88_RS03210;Name=D5F88_RS03210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03210;old_locus_tag=D5F88_03215 NZ_QYTI01000025.1 Protein Homology CDS 60870 61889 . - 0 ID=cds-WP_000700537.1;Parent=gene-D5F88_RS03210;Dbxref=GenBank:WP_000700537.1;Name=WP_000700537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000700533.1;locus_tag=D5F88_RS03210;product=hypothetical protein;protein_id=WP_000700537.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 62124 63107 . - . ID=gene-D5F88_RS03215;Name=D5F88_RS03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03215;old_locus_tag=D5F88_03220 NZ_QYTI01000025.1 Protein Homology CDS 62124 63107 . - 0 ID=cds-WP_000462143.1;Parent=gene-D5F88_RS03215;Dbxref=GenBank:WP_000462143.1;Name=WP_000462143.1;Ontology_term=GO:0006351,GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000462136.1;locus_tag=D5F88_RS03215;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000462143.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 63270 63917 . - . ID=gene-D5F88_RS03220;Name=fsa;gbkey=Gene;gene=fsa;gene_biotype=protein_coding;locus_tag=D5F88_RS03220;old_locus_tag=D5F88_03225 NZ_QYTI01000025.1 Protein Homology CDS 63270 63917 . - 0 ID=cds-WP_000873297.1;Parent=gene-D5F88_RS03220;Dbxref=GenBank:WP_000873297.1;Name=WP_000873297.1;Ontology_term=GO:0005975,GO:0016832;gbkey=CDS;gene=fsa;go_function=aldehyde-lyase activity|0016832||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481225.1;locus_tag=D5F88_RS03220;product=fructose-6-phosphate aldolase;protein_id=WP_000873297.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 63928 64644 . - . ID=gene-D5F88_RS03225;Name=D5F88_RS03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03225;old_locus_tag=D5F88_03230 NZ_QYTI01000025.1 Protein Homology CDS 63928 64644 . - 0 ID=cds-WP_001129980.1;Parent=gene-D5F88_RS03225;Dbxref=GenBank:WP_001129980.1;Name=WP_001129980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001934215.1;locus_tag=D5F88_RS03225;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_001129980.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 64646 65509 . - . ID=gene-D5F88_RS03230;Name=D5F88_RS03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03230;old_locus_tag=D5F88_03235 NZ_QYTI01000025.1 Protein Homology CDS 64646 65509 . - 0 ID=cds-WP_016503229.1;Parent=gene-D5F88_RS03230;Dbxref=GenBank:WP_016503229.1;Name=WP_016503229.1;Ontology_term=GO:0005975,GO:0016861;gbkey=CDS;go_function=intramolecular oxidoreductase activity%2C interconverting aldoses and ketoses|0016861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002297181.1;locus_tag=D5F88_RS03230;product=L-ribulose-5-phosphate 3-epimerase;protein_id=WP_016503229.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 65513 66178 . - . ID=gene-D5F88_RS03235;Name=D5F88_RS03235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03235;old_locus_tag=D5F88_03240 NZ_QYTI01000025.1 Protein Homology CDS 65513 66178 . - 0 ID=cds-WP_016481227.1;Parent=gene-D5F88_RS03235;Dbxref=GenBank:WP_016481227.1;Name=WP_016481227.1;Ontology_term=GO:0000287,GO:0016831;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,carboxy-lyase activity|0016831||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000166733.1;locus_tag=D5F88_RS03235;product=3-keto-L-gulonate-6-phosphate decarboxylase UlaD;protein_id=WP_016481227.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 66291 66776 . - . ID=gene-D5F88_RS03240;Name=D5F88_RS03240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03240;old_locus_tag=D5F88_03245 NZ_QYTI01000025.1 Protein Homology CDS 66291 66776 . - 0 ID=cds-WP_016481228.1;Parent=gene-D5F88_RS03240;Dbxref=GenBank:WP_016481228.1;Name=WP_016481228.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002267837.1;locus_tag=D5F88_RS03240;product=PTS sugar transporter subunit IIA;protein_id=WP_016481228.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 66843 67121 . - . ID=gene-D5F88_RS03245;Name=D5F88_RS03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03245;old_locus_tag=D5F88_03250 NZ_QYTI01000025.1 Protein Homology CDS 66843 67121 . - 0 ID=cds-WP_000241475.1;Parent=gene-D5F88_RS03245;Dbxref=GenBank:WP_000241475.1;Name=WP_000241475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000241478.1;locus_tag=D5F88_RS03245;product=PTS sugar transporter subunit IIB;protein_id=WP_000241475.1;transl_table=11 NZ_QYTI01000025.1 RefSeq gene 67149 68588 . - . ID=gene-D5F88_RS03250;Name=D5F88_RS03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03250;old_locus_tag=D5F88_03255 NZ_QYTI01000025.1 Protein Homology CDS 67149 68588 . - 0 ID=cds-WP_016481229.1;Parent=gene-D5F88_RS03250;Dbxref=GenBank:WP_016481229.1;Name=WP_016481229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000427086.1;locus_tag=D5F88_RS03250;product=PTS sugar transporter subunit IIC;protein_id=WP_016481229.1;transl_table=11 NZ_QYTI01000025.1 RefSeq pseudogene 68609 69995 . - . ID=gene-D5F88_RS03255;Name=D5F88_RS03255;end_range=69995,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03255;old_locus_tag=D5F88_03260;partial=true;pseudo=true NZ_QYTI01000025.1 Protein Homology CDS 68609 69995 . - 0 ID=cds-D5F88_RS03255;Parent=gene-D5F88_RS03255;Note=frameshifted%3B internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0004803;end_range=69995,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015057423.1;locus_tag=D5F88_RS03255;partial=true;product=IS1182 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000026.1 1 901 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000026.1 RefSeq region 1 901 . + . ID=NZ_QYTI01000026.1:1..901;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000026.1 RefSeq gene 1 901 . - . ID=gene-D5F88_RS11670;Name=D5F88_RS11670;end_range=901,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11670;partial=true;start_range=.,1 NZ_QYTI01000026.1 GeneMarkS-2+ CDS 1 901 . - 0 ID=cds-WP_260424971.1;Parent=gene-D5F88_RS11670;Dbxref=GenBank:WP_260424971.1;Name=WP_260424971.1;end_range=901,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS11670;partial=true;product=hypothetical protein;protein_id=WP_260424971.1;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000027.1 1 1594 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000027.1 RefSeq region 1 1594 . + . ID=NZ_QYTI01000027.1:1..1594;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000027.1 RefSeq pseudogene 1 593 . + . ID=gene-D5F88_RS03265;Name=D5F88_RS03265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03265;old_locus_tag=D5F88_03270;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000027.1 Protein Homology CDS 1 593 . + 1 ID=cds-D5F88_RS03265;Parent=gene-D5F88_RS03265;Note=frameshifted%3B internal stop%3B incomplete%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015057434.1;locus_tag=D5F88_RS03265;partial=true;product=transposase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000027.1 RefSeq gene 819 1004 . + . ID=gene-D5F88_RS03275;Name=D5F88_RS03275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03275;old_locus_tag=D5F88_03280 NZ_QYTI01000027.1 Protein Homology CDS 819 1004 . + 0 ID=cds-WP_372538331.1;Parent=gene-D5F88_RS03275;Dbxref=GenBank:WP_372538331.1;Name=WP_372538331.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021071.6;locus_tag=D5F88_RS03275;product=conserved phage C-terminal domain-containing protein;protein_id=WP_372538331.1;transl_table=11 NZ_QYTI01000027.1 RefSeq gene 985 1134 . + . ID=gene-D5F88_RS11675;Name=D5F88_RS11675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11675 NZ_QYTI01000027.1 GeneMarkS-2+ CDS 985 1134 . + 0 ID=cds-WP_180383444.1;Parent=gene-D5F88_RS11675;Dbxref=GenBank:WP_180383444.1;Name=WP_180383444.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS11675;product=hypothetical protein;protein_id=WP_180383444.1;transl_table=11 NZ_QYTI01000027.1 RefSeq pseudogene 1148 1594 . - . ID=gene-D5F88_RS03280;Name=D5F88_RS03280;end_range=1594,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03280;old_locus_tag=D5F88_03285;partial=true;pseudo=true NZ_QYTI01000027.1 Protein Homology CDS 1148 1594 . - 0 ID=cds-D5F88_RS03280;Parent=gene-D5F88_RS03280;Note=internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0004803;end_range=1594,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS03280;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000028.1 1 35812 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000028.1 RefSeq region 1 35812 . + . ID=NZ_QYTI01000028.1:1..35812;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000028.1 RefSeq pseudogene 1 775 . - . ID=gene-D5F88_RS03285;Name=D5F88_RS03285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03285;old_locus_tag=D5F88_03290;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000028.1 Protein Homology CDS 1 775 . - 0 ID=cds-D5F88_RS03285;Parent=gene-D5F88_RS03285;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS03285;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000028.1 RefSeq pseudogene 855 2564 . + . ID=gene-D5F88_RS11680;Name=D5F88_RS11680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11680;partial=true;pseudo=true;start_range=.,855 NZ_QYTI01000028.1 Protein Homology CDS 855 2564 . + 0 ID=cds-D5F88_RS11680;Parent=gene-D5F88_RS11680;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009986;gbkey=CDS;go_component=cell surface|0009986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001063250.1;locus_tag=D5F88_RS11680;partial=true;product=LPXTG cell wall anchor domain-containing protein;pseudo=true;start_range=.,855;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 2770 3309 . + . ID=gene-D5F88_RS03305;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=D5F88_RS03305;old_locus_tag=D5F88_03310 NZ_QYTI01000028.1 Protein Homology CDS 2770 3309 . + 0 ID=cds-WP_000887149.1;Parent=gene-D5F88_RS03305;Dbxref=GenBank:WP_000887149.1;Name=WP_000887149.1;Ontology_term=GO:0032784;gbkey=CDS;gene=nusG;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000887149.1;locus_tag=D5F88_RS03305;product=transcription termination/antitermination protein NusG;protein_id=WP_000887149.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 3447 4292 . + . ID=gene-D5F88_RS03310;Name=D5F88_RS03310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03310;old_locus_tag=D5F88_03315 NZ_QYTI01000028.1 Protein Homology CDS 3447 4292 . + 0 ID=cds-WP_016503332.1;Parent=gene-D5F88_RS03310;Dbxref=GenBank:WP_016503332.1;Name=WP_016503332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000953624.1;locus_tag=D5F88_RS03310;product=patatin-like phospholipase family protein;protein_id=WP_016503332.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 4335 5582 . - . ID=gene-D5F88_RS03315;Name=D5F88_RS03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03315;old_locus_tag=D5F88_03320 NZ_QYTI01000028.1 Protein Homology CDS 4335 5582 . - 0 ID=cds-WP_000074728.1;Parent=gene-D5F88_RS03315;Dbxref=GenBank:WP_000074728.1;Name=WP_000074728.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481321.1;locus_tag=D5F88_RS03315;product=MFS transporter;protein_id=WP_000074728.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 5959 8460 . + . ID=gene-D5F88_RS03320;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=D5F88_RS03320;old_locus_tag=D5F88_03325 NZ_QYTI01000028.1 Protein Homology CDS 5959 8460 . + 0 ID=cds-WP_086163523.1;Parent=gene-D5F88_RS03320;Dbxref=GenBank:WP_086163523.1;Name=WP_086163523.1;Ontology_term=GO:0006429,GO:0000166,GO:0004823,GO:0005524;gbkey=CDS;gene=leuS;go_function=nucleotide binding|0000166||IEA,leucine-tRNA ligase activity|0004823||IEA,ATP binding|0005524||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014639013.1;locus_tag=D5F88_RS03320;product=leucine--tRNA ligase;protein_id=WP_086163523.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 8550 9158 . - . ID=gene-D5F88_RS03325;Name=D5F88_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03325;old_locus_tag=D5F88_03330 NZ_QYTI01000028.1 Protein Homology CDS 8550 9158 . - 0 ID=cds-WP_000903268.1;Parent=gene-D5F88_RS03325;Dbxref=GenBank:WP_000903268.1;Name=WP_000903268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000903267.1;locus_tag=D5F88_RS03325;product=hypothetical protein;protein_id=WP_000903268.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 9251 10639 . - . ID=gene-D5F88_RS03330;Name=D5F88_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03330;old_locus_tag=D5F88_03335 NZ_QYTI01000028.1 Protein Homology CDS 9251 10639 . - 0 ID=cds-WP_000730416.1;Parent=gene-D5F88_RS03330;Dbxref=GenBank:WP_000730416.1;Name=WP_000730416.1;Ontology_term=GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000730412.1;locus_tag=D5F88_RS03330;product=sensor histidine kinase;protein_id=WP_000730416.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 10636 11322 . - . ID=gene-D5F88_RS03335;Name=D5F88_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03335;old_locus_tag=D5F88_03340 NZ_QYTI01000028.1 Protein Homology CDS 10636 11322 . - 0 ID=cds-WP_000161338.1;Parent=gene-D5F88_RS03335;Dbxref=GenBank:WP_000161338.1;Name=WP_000161338.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000161341.1;locus_tag=D5F88_RS03335;product=response regulator transcription factor;protein_id=WP_000161338.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 11555 16270 . - . ID=gene-D5F88_RS03340;Name=D5F88_RS03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03340;old_locus_tag=D5F88_03345 NZ_QYTI01000028.1 Protein Homology CDS 11555 16270 . - 0 ID=cds-WP_086163522.1;Parent=gene-D5F88_RS03340;Dbxref=GenBank:WP_086163522.1;Name=WP_086163522.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645139.1;locus_tag=D5F88_RS03340;product=S8 family serine peptidase;protein_id=WP_086163522.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 16593 17285 . + . ID=gene-D5F88_RS03350;Name=D5F88_RS03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03350;old_locus_tag=D5F88_03355 NZ_QYTI01000028.1 Protein Homology CDS 16593 17285 . + 0 ID=cds-WP_000410672.1;Parent=gene-D5F88_RS03350;Dbxref=GenBank:WP_000410672.1;Name=WP_000410672.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:1902495;gbkey=CDS;go_component=membrane|0016020||IEA,transmembrane transporter complex|1902495||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000410672.1;locus_tag=D5F88_RS03350;product=AzlC family ABC transporter permease;protein_id=WP_000410672.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 17275 17598 . + . ID=gene-D5F88_RS03355;Name=D5F88_RS03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03355;old_locus_tag=D5F88_03360 NZ_QYTI01000028.1 Protein Homology CDS 17275 17598 . + 0 ID=cds-WP_000610952.1;Parent=gene-D5F88_RS03355;Dbxref=GenBank:WP_000610952.1;Name=WP_000610952.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000610952.1;locus_tag=D5F88_RS03355;product=AzlD domain-containing protein;protein_id=WP_000610952.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 17968 20205 . + . ID=gene-D5F88_RS03360;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;locus_tag=D5F88_RS03360;old_locus_tag=D5F88_03365 NZ_QYTI01000028.1 Protein Homology CDS 17968 20205 . + 0 ID=cds-WP_000241559.1;Parent=gene-D5F88_RS03360;Dbxref=GenBank:WP_000241559.1;Name=WP_000241559.1;Ontology_term=GO:0008652,GO:0009086,GO:0003871,GO:0008270;gbkey=CDS;gene=metE;go_function=5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|0003871||IEA,zinc ion binding|0008270||IEA;go_process=amino acid biosynthetic process|0008652||IEA,methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019806054.1;locus_tag=D5F88_RS03360;product=5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase;protein_id=WP_000241559.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 20250 22094 . + . ID=gene-D5F88_RS03365;Name=D5F88_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03365;old_locus_tag=D5F88_03370 NZ_QYTI01000028.1 Protein Homology CDS 20250 22094 . + 0 ID=cds-WP_000032994.1;Parent=gene-D5F88_RS03365;Dbxref=GenBank:WP_000032994.1;Name=WP_000032994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000032994.1;locus_tag=D5F88_RS03365;product=bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase;protein_id=WP_000032994.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 22441 23148 . + . ID=gene-D5F88_RS03370;Name=D5F88_RS03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03370;old_locus_tag=D5F88_03375 NZ_QYTI01000028.1 Protein Homology CDS 22441 23148 . + 0 ID=cds-WP_000227144.1;Parent=gene-D5F88_RS03370;Dbxref=GenBank:WP_000227144.1;Name=WP_000227144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000227145.1;locus_tag=D5F88_RS03370;product=DUF1003 domain-containing protein;protein_id=WP_000227144.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 23313 24398 . - . ID=gene-D5F88_RS03375;Name=D5F88_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03375;old_locus_tag=D5F88_03380 NZ_QYTI01000028.1 Protein Homology CDS 23313 24398 . - 0 ID=cds-WP_000210838.1;Parent=gene-D5F88_RS03375;Dbxref=GenBank:WP_000210838.1;Name=WP_000210838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644856.1;locus_tag=D5F88_RS03375;product=iron-containing alcohol dehydrogenase family protein;protein_id=WP_000210838.1;transl_table=11 NZ_QYTI01000028.1 RefSeq pseudogene 24599 25137 . - . ID=gene-D5F88_RS03380;Name=D5F88_RS03380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03380;old_locus_tag=D5F88_03385;pseudo=true NZ_QYTI01000028.1 Protein Homology CDS 24599 25137 . - 0 ID=cds-D5F88_RS03380;Parent=gene-D5F88_RS03380;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647778.1;locus_tag=D5F88_RS03380;product=DNA topology modulation protein;pseudo=true;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 25906 26673 . + . ID=gene-D5F88_RS03390;Name=cfb;gbkey=Gene;gene=cfb;gene_biotype=protein_coding;locus_tag=D5F88_RS03390;old_locus_tag=D5F88_03395 NZ_QYTI01000028.1 Protein Homology CDS 25906 26673 . + 0 ID=cds-WP_001101132.1;Parent=gene-D5F88_RS03390;Dbxref=GenBank:WP_001101132.1;Name=WP_001101132.1;gbkey=CDS;gene=cfb;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001101136.1;locus_tag=D5F88_RS03390;product=CAMP factor pore-forming toxin Cfb-I;protein_id=WP_001101132.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 26846 27148 . + . ID=gene-D5F88_RS03395;Name=D5F88_RS03395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03395;old_locus_tag=D5F88_03400 NZ_QYTI01000028.1 Protein Homology CDS 26846 27148 . + 0 ID=cds-WP_000162433.1;Parent=gene-D5F88_RS03395;Dbxref=GenBank:WP_000162433.1;Name=WP_000162433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000162432.1;locus_tag=D5F88_RS03395;product=rhodanese-like domain-containing protein;protein_id=WP_000162433.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 27305 28168 . - . ID=gene-D5F88_RS03400;Name=D5F88_RS03400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03400;old_locus_tag=D5F88_03405 NZ_QYTI01000028.1 Protein Homology CDS 27305 28168 . - 0 ID=cds-WP_086163521.1;Parent=gene-D5F88_RS03400;Dbxref=GenBank:WP_086163521.1;Name=WP_086163521.1;Ontology_term=GO:0071586,GO:0004222,GO:0070007,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,glutamic-type endopeptidase activity|0070007||IEA;go_process=CAAX-box protein processing|0071586||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001071061.1;locus_tag=D5F88_RS03400;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_086163521.1;transl_table=11 NZ_QYTI01000028.1 RefSeq pseudogene 28473 29033 . - . ID=gene-D5F88_RS03405;Name=D5F88_RS03405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03405;old_locus_tag=D5F88_03410;pseudo=true NZ_QYTI01000028.1 Protein Homology CDS 28473 29033 . - 0 ID=cds-D5F88_RS03405;Parent=gene-D5F88_RS03405;Note=internal stop;Ontology_term=GO:0009691,GO:0016799;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;go_process=cytokinin biosynthetic process|0009691||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001223122.1;locus_tag=D5F88_RS03405;product=LOG family protein;pseudo=true;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 29030 29347 . - . ID=gene-D5F88_RS03410;Name=D5F88_RS03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03410;old_locus_tag=D5F88_03415 NZ_QYTI01000028.1 Protein Homology CDS 29030 29347 . - 0 ID=cds-WP_016503315.1;Parent=gene-D5F88_RS03410;Dbxref=GenBank:WP_016503315.1;Name=WP_016503315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503315.1;locus_tag=D5F88_RS03410;product=MazG nucleotide pyrophosphohydrolase domain-containing protein;protein_id=WP_016503315.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 29561 30175 . + . ID=gene-D5F88_RS03415;Name=D5F88_RS03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03415;old_locus_tag=D5F88_03420 NZ_QYTI01000028.1 Protein Homology CDS 29561 30175 . + 0 ID=cds-WP_016503314.1;Parent=gene-D5F88_RS03415;Dbxref=GenBank:WP_016503314.1;Name=WP_016503314.1;Ontology_term=GO:0006629,GO:1901137,GO:0016791,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphatase activity|0016791||IEA;go_process=lipid metabolic process|0006629||IEA,carbohydrate derivative biosynthetic process|1901137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001035912.1;locus_tag=D5F88_RS03415;product=phosphatase PAP2 family protein;protein_id=WP_016503314.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 30191 30400 . + . ID=gene-D5F88_RS11885;Name=D5F88_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11885;old_locus_tag=D5F88_03425 NZ_QYTI01000028.1 Protein Homology CDS 30191 30400 . + 0 ID=cds-WP_086163520.1;Parent=gene-D5F88_RS11885;Dbxref=GenBank:WP_086163520.1;Name=WP_086163520.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001108133.1;locus_tag=D5F88_RS11885;product=hypothetical protein;protein_id=WP_086163520.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 30424 31500 . + . ID=gene-D5F88_RS03425;Name=D5F88_RS03425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03425;old_locus_tag=D5F88_03430 NZ_QYTI01000028.1 Protein Homology CDS 30424 31500 . + 0 ID=cds-WP_000900242.1;Parent=gene-D5F88_RS03425;Dbxref=GenBank:WP_000900242.1;Name=WP_000900242.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000900237.1;locus_tag=D5F88_RS03425;product=helix-turn-helix domain-containing protein;protein_id=WP_000900242.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 31502 31708 . + . ID=gene-D5F88_RS03430;Name=D5F88_RS03430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03430;old_locus_tag=D5F88_03435 NZ_QYTI01000028.1 Protein Homology CDS 31502 31708 . + 0 ID=cds-WP_001090962.1;Parent=gene-D5F88_RS03430;Dbxref=GenBank:WP_001090962.1;Name=WP_001090962.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001090962.1;locus_tag=D5F88_RS03430;product=PLDc N-terminal domain-containing protein;protein_id=WP_001090962.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 31705 32607 . + . ID=gene-D5F88_RS03435;Name=D5F88_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03435;old_locus_tag=D5F88_03440 NZ_QYTI01000028.1 Protein Homology CDS 31705 32607 . + 0 ID=cds-WP_000644459.1;Parent=gene-D5F88_RS03435;Dbxref=GenBank:WP_000644459.1;Name=WP_000644459.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000644451.1;locus_tag=D5F88_RS03435;product=ABC transporter ATP-binding protein;protein_id=WP_000644459.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 32604 33365 . + . ID=gene-D5F88_RS03440;Name=D5F88_RS03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03440;old_locus_tag=D5F88_03445 NZ_QYTI01000028.1 Protein Homology CDS 32604 33365 . + 0 ID=cds-WP_000838136.1;Parent=gene-D5F88_RS03440;Dbxref=GenBank:WP_000838136.1;Name=WP_000838136.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000838141.1;locus_tag=D5F88_RS03440;product=ABC transporter permease;protein_id=WP_000838136.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 33534 34022 . + . ID=gene-D5F88_RS03445;Name=D5F88_RS03445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03445;old_locus_tag=D5F88_03450 NZ_QYTI01000028.1 Protein Homology CDS 33534 34022 . + 0 ID=cds-WP_086163519.1;Parent=gene-D5F88_RS03445;Dbxref=GenBank:WP_086163519.1;Name=WP_086163519.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000403115.1;locus_tag=D5F88_RS03445;product=GNAT family N-acetyltransferase;protein_id=WP_086163519.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 34545 34880 . + . ID=gene-D5F88_RS03450;Name=D5F88_RS03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03450;old_locus_tag=D5F88_03455 NZ_QYTI01000028.1 Protein Homology CDS 34545 34880 . + 0 ID=cds-WP_000827865.1;Parent=gene-D5F88_RS03450;Dbxref=GenBank:WP_000827865.1;Name=WP_000827865.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000827864.1;locus_tag=D5F88_RS03450;product=PadR family transcriptional regulator;protein_id=WP_000827865.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 34917 35471 . + . ID=gene-D5F88_RS03455;Name=D5F88_RS03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03455;old_locus_tag=D5F88_03460 NZ_QYTI01000028.1 Protein Homology CDS 34917 35471 . + 0 ID=cds-WP_086163518.1;Parent=gene-D5F88_RS03455;Dbxref=GenBank:WP_086163518.1;Name=WP_086163518.1;Ontology_term=GO:0016791;gbkey=CDS;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000207508.1;locus_tag=D5F88_RS03455;product=histidine phosphatase family protein;protein_id=WP_086163518.1;transl_table=11 NZ_QYTI01000028.1 RefSeq gene 35499 35812 . - . ID=gene-D5F88_RS03460;Name=D5F88_RS03460;end_range=35812,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03460;old_locus_tag=D5F88_03465;partial=true NZ_QYTI01000028.1 Protein Homology CDS 35499 35812 . - 2 ID=cds-WP_142997431.1;Parent=gene-D5F88_RS03460;Dbxref=GenBank:WP_142997431.1;Name=WP_142997431.1;Ontology_term=GO:0015074;end_range=35812,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS03460;partial=true;product=integrase core domain-containing protein;protein_id=WP_142997431.1;transl_table=11 ##sequence-region NZ_QYTI01000029.1 1 6406 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000029.1 RefSeq region 1 6406 . + . ID=NZ_QYTI01000029.1:1..6406;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000029.1 RefSeq pseudogene 1 475 . - . ID=gene-D5F88_RS03465;Name=D5F88_RS03465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03465;old_locus_tag=D5F88_03470;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000029.1 Protein Homology CDS 1 475 . - 0 ID=cds-D5F88_RS03465;Parent=gene-D5F88_RS03465;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS03465;partial=true;product=transposase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000029.1 RefSeq gene 788 1423 . + . ID=gene-D5F88_RS03470;Name=D5F88_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03470;old_locus_tag=D5F88_03475 NZ_QYTI01000029.1 Protein Homology CDS 788 1423 . + 0 ID=cds-WP_025195585.1;Parent=gene-D5F88_RS03470;Dbxref=GenBank:WP_025195585.1;Name=WP_025195585.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646926.1;locus_tag=D5F88_RS03470;product=ABC transporter permease;protein_id=WP_025195585.1;transl_table=11 NZ_QYTI01000029.1 RefSeq gene 1433 2119 . + . ID=gene-D5F88_RS03475;Name=D5F88_RS03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03475;old_locus_tag=D5F88_03480 NZ_QYTI01000029.1 Protein Homology CDS 1433 2119 . + 0 ID=cds-WP_016480591.1;Parent=gene-D5F88_RS03475;Dbxref=GenBank:WP_016480591.1;Name=WP_016480591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001048166.1;locus_tag=D5F88_RS03475;product=ABC transporter permease;protein_id=WP_016480591.1;transl_table=11 NZ_QYTI01000029.1 RefSeq gene 2357 2785 . + . ID=gene-D5F88_RS11690;Name=D5F88_RS11690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11690;old_locus_tag=D5F88_03485 NZ_QYTI01000029.1 Protein Homology CDS 2357 2785 . + 0 ID=cds-WP_257638791.1;Parent=gene-D5F88_RS11690;Dbxref=GenBank:WP_257638791.1;Name=WP_257638791.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001865677.1;locus_tag=D5F88_RS11690;product=FtsX-like permease family protein;protein_id=WP_257638791.1;transl_table=11 NZ_QYTI01000029.1 RefSeq gene 2882 3553 . + . ID=gene-D5F88_RS03485;Name=D5F88_RS03485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03485;old_locus_tag=D5F88_03490 NZ_QYTI01000029.1 Protein Homology CDS 2882 3553 . + 0 ID=cds-WP_086163286.1;Parent=gene-D5F88_RS03485;Dbxref=GenBank:WP_086163286.1;Name=WP_086163286.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000891268.1;locus_tag=D5F88_RS03485;product=ATP-binding cassette domain-containing protein;protein_id=WP_086163286.1;transl_table=11 NZ_QYTI01000029.1 RefSeq gene 3610 5055 . - . ID=gene-D5F88_RS03490;Name=D5F88_RS03490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03490;old_locus_tag=D5F88_03495 NZ_QYTI01000029.1 Protein Homology CDS 3610 5055 . - 0 ID=cds-WP_000750935.1;Parent=gene-D5F88_RS03490;Dbxref=GenBank:WP_000750935.1;Name=WP_000750935.1;Ontology_term=GO:0000166;gbkey=CDS;go_function=nucleotide binding|0000166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646061.1;locus_tag=D5F88_RS03490;product=FAD/NAD(P)-binding protein;protein_id=WP_000750935.1;transl_table=11 NZ_QYTI01000029.1 RefSeq gene 5316 6101 . + . ID=gene-D5F88_RS03495;Name=D5F88_RS03495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03495;old_locus_tag=D5F88_03500 NZ_QYTI01000029.1 Protein Homology CDS 5316 6101 . + 0 ID=cds-WP_000825437.1;Parent=gene-D5F88_RS03495;Dbxref=GenBank:WP_000825437.1;Name=WP_000825437.1;Ontology_term=GO:0003676,GO:0004519,GO:0046872;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000825435.1;locus_tag=D5F88_RS03495;product=DNA/RNA non-specific endonuclease;protein_id=WP_000825437.1;transl_table=11 NZ_QYTI01000029.1 RefSeq pseudogene 6179 6388 . - . ID=gene-D5F88_RS03500;Name=D5F88_RS03500;end_range=6388,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03500;old_locus_tag=D5F88_03505;partial=true;pseudo=true NZ_QYTI01000029.1 Protein Homology CDS 6179 6388 . - 0 ID=cds-D5F88_RS03500;Parent=gene-D5F88_RS03500;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=6388,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502751.1;locus_tag=D5F88_RS03500;partial=true;product=cytochrome O ubiquinol oxidase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000003.1 1 6700 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000003.1 RefSeq region 1 6700 . + . ID=NZ_QYTI01000003.1:1..6700;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000003.1 RefSeq gene 1 528 . + . ID=gene-D5F88_RS01185;Name=D5F88_RS01185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01185;old_locus_tag=D5F88_01185;partial=true;start_range=.,1 NZ_QYTI01000003.1 Protein Homology CDS 1 528 . + 0 ID=cds-WP_260424965.1;Parent=gene-D5F88_RS01185;Dbxref=GenBank:WP_260424965.1;Name=WP_260424965.1;Ontology_term=GO:0006259,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA metabolic process|0006259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000064172.1;locus_tag=D5F88_RS01185;partial=true;product=recombinase RecT;protein_id=WP_260424965.1;start_range=.,1;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 525 1322 . + . ID=gene-D5F88_RS01190;Name=D5F88_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01190;old_locus_tag=D5F88_01190 NZ_QYTI01000003.1 Protein Homology CDS 525 1322 . + 0 ID=cds-WP_124759399.1;Parent=gene-D5F88_RS01190;Dbxref=GenBank:WP_124759399.1;Name=WP_124759399.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054699.1;locus_tag=D5F88_RS01190;product=PD-(D/E)XK nuclease-like domain-containing protein;protein_id=WP_124759399.1;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 1485 1682 . + . ID=gene-D5F88_RS01195;Name=D5F88_RS01195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01195;old_locus_tag=D5F88_01195 NZ_QYTI01000003.1 Protein Homology CDS 1485 1682 . + 0 ID=cds-WP_124773151.1;Parent=gene-D5F88_RS01195;Dbxref=GenBank:WP_124773151.1;Name=WP_124773151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647220.1;locus_tag=D5F88_RS01195;product=hypothetical protein;protein_id=WP_124773151.1;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 1714 2025 . + . ID=gene-D5F88_RS01200;Name=D5F88_RS01200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01200;old_locus_tag=D5F88_01200 NZ_QYTI01000003.1 Protein Homology CDS 1714 2025 . + 0 ID=cds-WP_124773153.1;Parent=gene-D5F88_RS01200;Dbxref=GenBank:WP_124773153.1;Name=WP_124773153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002990067.1;locus_tag=D5F88_RS01200;product=hypothetical protein;protein_id=WP_124773153.1;transl_table=11 NZ_QYTI01000003.1 RefSeq pseudogene 2022 2533 . + . ID=gene-D5F88_RS01205;Name=D5F88_RS01205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS01205;old_locus_tag=D5F88_01205;pseudo=true NZ_QYTI01000003.1 Protein Homology CDS 2022 2533 . + 0 ID=cds-D5F88_RS01205;Parent=gene-D5F88_RS01205;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000067998.1;locus_tag=D5F88_RS01205;product=hypothetical protein;pseudo=true;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 2520 2861 . + . ID=gene-D5F88_RS01210;Name=D5F88_RS01210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01210;old_locus_tag=D5F88_01210 NZ_QYTI01000003.1 Protein Homology CDS 2520 2861 . + 0 ID=cds-WP_124759415.1;Parent=gene-D5F88_RS01210;Dbxref=GenBank:WP_124759415.1;Name=WP_124759415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644868.1;locus_tag=D5F88_RS01210;product=hypothetical protein;protein_id=WP_124759415.1;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 2873 3145 . + . ID=gene-D5F88_RS01215;Name=D5F88_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01215;old_locus_tag=D5F88_01215 NZ_QYTI01000003.1 Protein Homology CDS 2873 3145 . + 0 ID=cds-WP_124759402.1;Parent=gene-D5F88_RS01215;Dbxref=GenBank:WP_124759402.1;Name=WP_124759402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000763911.1;locus_tag=D5F88_RS01215;product=nucleotide modification associated domain-containing protein;protein_id=WP_124759402.1;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 3145 3510 . + . ID=gene-D5F88_RS01220;Name=D5F88_RS01220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01220;old_locus_tag=D5F88_01220 NZ_QYTI01000003.1 Protein Homology CDS 3145 3510 . + 0 ID=cds-WP_124759403.1;Parent=gene-D5F88_RS01220;Dbxref=GenBank:WP_124759403.1;Name=WP_124759403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480529.1;locus_tag=D5F88_RS01220;product=YopX family protein;protein_id=WP_124759403.1;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 3510 3779 . + . ID=gene-D5F88_RS01225;Name=D5F88_RS01225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01225;old_locus_tag=D5F88_01225 NZ_QYTI01000003.1 Protein Homology CDS 3510 3779 . + 0 ID=cds-WP_185696277.1;Parent=gene-D5F88_RS01225;Dbxref=GenBank:WP_185696277.1;Name=WP_185696277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647862.1;locus_tag=D5F88_RS01225;product=hypothetical protein;protein_id=WP_185696277.1;transl_table=11 NZ_QYTI01000003.1 RefSeq pseudogene 3779 4384 . + . ID=gene-D5F88_RS01230;Name=D5F88_RS01230;end_range=4384,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS01230;old_locus_tag=D5F88_01230;partial=true;pseudo=true NZ_QYTI01000003.1 Protein Homology CDS 3779 4384 . + 0 ID=cds-D5F88_RS01230;Parent=gene-D5F88_RS01230;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4384,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648176.1;locus_tag=D5F88_RS01230;partial=true;product=DNA methyltransferase;pseudo=true;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 4441 4662 . + . ID=gene-D5F88_RS11875;Name=D5F88_RS11875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11875;old_locus_tag=D5F88_01235 NZ_QYTI01000003.1 GeneMarkS-2+ CDS 4441 4662 . + 0 ID=cds-WP_124773157.1;Parent=gene-D5F88_RS11875;Dbxref=GenBank:WP_124773157.1;Name=WP_124773157.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS11875;product=hypothetical protein;protein_id=WP_124773157.1;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 4905 5339 . + . ID=gene-D5F88_RS01240;Name=D5F88_RS01240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01240;old_locus_tag=D5F88_01240 NZ_QYTI01000003.1 Protein Homology CDS 4905 5339 . + 0 ID=cds-WP_000142570.1;Parent=gene-D5F88_RS01240;Dbxref=GenBank:WP_000142570.1;Name=WP_000142570.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285442.1;locus_tag=D5F88_RS01240;product=ArpU family phage packaging/lysis transcriptional regulator;protein_id=WP_000142570.1;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 5915 6043 . + . ID=gene-D5F88_RS11775;Name=D5F88_RS11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11775 NZ_QYTI01000003.1 GeneMarkS-2+ CDS 5915 6043 . + 0 ID=cds-WP_016480533.1;Parent=gene-D5F88_RS11775;Dbxref=GenBank:WP_016480533.1;Name=WP_016480533.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS11775;product=hypothetical protein;protein_id=WP_016480533.1;transl_table=11 NZ_QYTI01000003.1 RefSeq gene 6084 6419 . + . ID=gene-D5F88_RS01245;Name=D5F88_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01245;old_locus_tag=D5F88_01245 NZ_QYTI01000003.1 Protein Homology CDS 6084 6419 . + 0 ID=cds-WP_124749034.1;Parent=gene-D5F88_RS01245;Dbxref=GenBank:WP_124749034.1;Name=WP_124749034.1;Ontology_term=GO:0003676,GO:0004519,GO:0008270;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001247766.1;locus_tag=D5F88_RS01245;product=HNH endonuclease;protein_id=WP_124749034.1;transl_table=11 NZ_QYTI01000003.1 RefSeq pseudogene 6594 6700 . + . ID=gene-D5F88_RS01250;Name=D5F88_RS01250;end_range=6700,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS01250;old_locus_tag=D5F88_01250;partial=true;pseudo=true NZ_QYTI01000003.1 Protein Homology CDS 6594 6700 . + 0 ID=cds-D5F88_RS01250;Parent=gene-D5F88_RS01250;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=6700,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002985371.1;locus_tag=D5F88_RS01250;partial=true;product=phage terminase small subunit P27 family;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000030.1 1 20978 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000030.1 RefSeq region 1 20978 . + . ID=NZ_QYTI01000030.1:1..20978;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000030.1 RefSeq gene 1 241 . - . ID=gene-D5F88_RS03505;Name=D5F88_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03505;old_locus_tag=D5F88_03510;partial=true;start_range=.,1 NZ_QYTI01000030.1 Protein Homology CDS 1 241 . - 0 ID=cds-WP_142997432.1;Parent=gene-D5F88_RS03505;Dbxref=GenBank:WP_142997432.1;Name=WP_142997432.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001080840.1;locus_tag=D5F88_RS03505;partial=true;product=helix-turn-helix domain-containing protein;protein_id=WP_142997432.1;start_range=.,1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 234 803 . - . ID=gene-D5F88_RS03510;Name=D5F88_RS03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03510;old_locus_tag=D5F88_03515 NZ_QYTI01000030.1 Protein Homology CDS 234 803 . - 0 ID=cds-WP_124773242.1;Parent=gene-D5F88_RS03510;Dbxref=GenBank:WP_124773242.1;Name=WP_124773242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001894085.1;locus_tag=D5F88_RS03510;product=hypothetical protein;protein_id=WP_124773242.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 837 1061 . - . ID=gene-D5F88_RS03515;Name=D5F88_RS03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03515;old_locus_tag=D5F88_03520 NZ_QYTI01000030.1 Protein Homology CDS 837 1061 . - 0 ID=cds-WP_124773244.1;Parent=gene-D5F88_RS03515;Dbxref=GenBank:WP_124773244.1;Name=WP_124773244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000431163.1;locus_tag=D5F88_RS03515;product=hypothetical protein;protein_id=WP_124773244.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 1063 1203 . - . ID=gene-D5F88_RS11695;Name=D5F88_RS11695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11695 NZ_QYTI01000030.1 Protein Homology CDS 1063 1203 . - 0 ID=cds-WP_017644872.1;Parent=gene-D5F88_RS11695;Dbxref=GenBank:WP_017644872.1;Name=WP_017644872.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644872.1;locus_tag=D5F88_RS11695;product=BOW99_gp33 family protein;protein_id=WP_017644872.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 1264 1449 . - . ID=gene-D5F88_RS03520;Name=D5F88_RS03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03520;old_locus_tag=D5F88_03525 NZ_QYTI01000030.1 Protein Homology CDS 1264 1449 . - 0 ID=cds-WP_000263690.1;Parent=gene-D5F88_RS03520;Dbxref=GenBank:WP_000263690.1;Name=WP_000263690.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000263688.1;locus_tag=D5F88_RS03520;product=helix-turn-helix domain-containing protein;protein_id=WP_000263690.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 1619 1933 . + . ID=gene-D5F88_RS03525;Name=D5F88_RS03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03525;old_locus_tag=D5F88_03530 NZ_QYTI01000030.1 GeneMarkS-2+ CDS 1619 1933 . + 0 ID=cds-WP_124749024.1-2;Parent=gene-D5F88_RS03525;Dbxref=GenBank:WP_124749024.1;Name=WP_124749024.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS03525;product=hypothetical protein;protein_id=WP_124749024.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 1908 2258 . - . ID=gene-D5F88_RS11805;Name=D5F88_RS11805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11805 NZ_QYTI01000030.1 Protein Homology CDS 1908 2258 . - 0 ID=cds-WP_260424731.1-2;Parent=gene-D5F88_RS11805;Dbxref=GenBank:WP_260424731.1;Name=WP_260424731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012560978.1;locus_tag=D5F88_RS11805;product=hypothetical protein;protein_id=WP_260424731.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 2301 3098 . - . ID=gene-D5F88_RS03535;Name=D5F88_RS03535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03535;old_locus_tag=D5F88_03540 NZ_QYTI01000030.1 Protein Homology CDS 2301 3098 . - 0 ID=cds-WP_124773248.1;Parent=gene-D5F88_RS03535;Dbxref=GenBank:WP_124773248.1;Name=WP_124773248.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001002948.1;locus_tag=D5F88_RS03535;product=phage antirepressor KilAC domain-containing protein;protein_id=WP_124773248.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 3109 3330 . - . ID=gene-D5F88_RS03540;Name=D5F88_RS03540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03540;old_locus_tag=D5F88_03545 NZ_QYTI01000030.1 Protein Homology CDS 3109 3330 . - 0 ID=cds-WP_043052998.1;Parent=gene-D5F88_RS03540;Dbxref=GenBank:WP_043052998.1;Name=WP_043052998.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000164461.1;locus_tag=D5F88_RS03540;product=helix-turn-helix transcriptional regulator;protein_id=WP_043052998.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 3445 3762 . + . ID=gene-D5F88_RS03545;Name=D5F88_RS03545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03545;old_locus_tag=D5F88_03550 NZ_QYTI01000030.1 Protein Homology CDS 3445 3762 . + 0 ID=cds-WP_260424732.1;Parent=gene-D5F88_RS03545;Dbxref=GenBank:WP_260424732.1;Name=WP_260424732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480566.1;locus_tag=D5F88_RS03545;product=hypothetical protein;protein_id=WP_260424732.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 3746 3949 . - . ID=gene-D5F88_RS03550;Name=D5F88_RS03550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03550;old_locus_tag=D5F88_03555 NZ_QYTI01000030.1 Protein Homology CDS 3746 3949 . - 0 ID=cds-WP_016480567.1;Parent=gene-D5F88_RS03550;Dbxref=GenBank:WP_016480567.1;Name=WP_016480567.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000658998.1;locus_tag=D5F88_RS03550;product=hypothetical protein;protein_id=WP_016480567.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 4025 4213 . - . ID=gene-D5F88_RS03555;Name=D5F88_RS03555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03555;old_locus_tag=D5F88_03560 NZ_QYTI01000030.1 Protein Homology CDS 4025 4213 . - 0 ID=cds-WP_016480569.1;Parent=gene-D5F88_RS03555;Dbxref=GenBank:WP_016480569.1;Name=WP_016480569.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480569.1;locus_tag=D5F88_RS03555;product=hypothetical protein;protein_id=WP_016480569.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 4244 4402 . - . ID=gene-D5F88_RS03560;Name=D5F88_RS03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03560;old_locus_tag=D5F88_03565 NZ_QYTI01000030.1 Protein Homology CDS 4244 4402 . - 0 ID=cds-WP_001104149.1;Parent=gene-D5F88_RS03560;Dbxref=GenBank:WP_001104149.1;Name=WP_001104149.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650606.1;locus_tag=D5F88_RS03560;product=hypothetical protein;protein_id=WP_001104149.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 4461 4673 . + . ID=gene-D5F88_RS03565;Name=D5F88_RS03565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03565;old_locus_tag=D5F88_03570 NZ_QYTI01000030.1 Protein Homology CDS 4461 4673 . + 0 ID=cds-WP_124749021.1;Parent=gene-D5F88_RS03565;Dbxref=GenBank:WP_124749021.1;Name=WP_124749021.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000703683.1;locus_tag=D5F88_RS03565;product=hypothetical protein;protein_id=WP_124749021.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 4662 4811 . - . ID=gene-D5F88_RS11700;Name=D5F88_RS11700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11700 NZ_QYTI01000030.1 Protein Homology CDS 4662 4811 . - 0 ID=cds-WP_185690891.1;Parent=gene-D5F88_RS11700;Dbxref=GenBank:WP_185690891.1;Name=WP_185690891.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014635531.1;locus_tag=D5F88_RS11700;product=hypothetical protein;protein_id=WP_185690891.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 5194 5934 . + . ID=gene-D5F88_RS03570;Name=D5F88_RS03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03570;old_locus_tag=D5F88_03575 NZ_QYTI01000030.1 Protein Homology CDS 5194 5934 . + 0 ID=cds-WP_124773246.1;Parent=gene-D5F88_RS03570;Dbxref=GenBank:WP_124773246.1;Name=WP_124773246.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648776.1;locus_tag=D5F88_RS03570;product=XRE family transcriptional regulator;protein_id=WP_124773246.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 5959 6501 . + . ID=gene-D5F88_RS03575;Name=D5F88_RS03575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03575;old_locus_tag=D5F88_03580 NZ_QYTI01000030.1 Protein Homology CDS 5959 6501 . + 0 ID=cds-WP_001047048.1;Parent=gene-D5F88_RS03575;Dbxref=GenBank:WP_001047048.1;Name=WP_001047048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001047048.1;locus_tag=D5F88_RS03575;product=PH domain-containing protein;protein_id=WP_001047048.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 6639 7727 . + . ID=gene-D5F88_RS03580;Name=D5F88_RS03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03580;old_locus_tag=D5F88_03585 NZ_QYTI01000030.1 Protein Homology CDS 6639 7727 . + 0 ID=cds-WP_124759218.1;Parent=gene-D5F88_RS03580;Dbxref=GenBank:WP_124759218.1;Name=WP_124759218.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012767061.1;locus_tag=D5F88_RS03580;product=site-specific integrase;protein_id=WP_124759218.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 8056 8694 . + . ID=gene-D5F88_RS03585;Name=D5F88_RS03585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03585;old_locus_tag=D5F88_03590 NZ_QYTI01000030.1 Protein Homology CDS 8056 8694 . + 0 ID=cds-WP_086163323.1;Parent=gene-D5F88_RS03585;Dbxref=GenBank:WP_086163323.1;Name=WP_086163323.1;Ontology_term=GO:0046677,GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;go_process=response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000146564.1;locus_tag=D5F88_RS03585;product=CatB-related O-acetyltransferase;protein_id=WP_086163323.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 8813 9916 . - . ID=gene-D5F88_RS03590;Name=D5F88_RS03590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03590;old_locus_tag=D5F88_03595 NZ_QYTI01000030.1 Protein Homology CDS 8813 9916 . - 0 ID=cds-WP_016502840.1;Parent=gene-D5F88_RS03590;Dbxref=GenBank:WP_016502840.1;Name=WP_016502840.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000065314.1;locus_tag=D5F88_RS03590;product=DUF2974 domain-containing protein;protein_id=WP_016502840.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 9916 12708 . - . ID=gene-D5F88_RS03595;Name=D5F88_RS03595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03595;old_locus_tag=D5F88_03600 NZ_QYTI01000030.1 Protein Homology CDS 9916 12708 . - 0 ID=cds-WP_016502839.1;Parent=gene-D5F88_RS03595;Dbxref=GenBank:WP_016502839.1;Name=WP_016502839.1;Ontology_term=GO:0005524,GO:0015662,GO:0016887,GO:0019829,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,P-type ion transporter activity|0015662||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000168898.1;locus_tag=D5F88_RS03595;product=cation-translocating P-type ATPase;protein_id=WP_016502839.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 12860 13294 . - . ID=gene-D5F88_RS03600;Name=msrB;gbkey=Gene;gene=msrB;gene_biotype=protein_coding;locus_tag=D5F88_RS03600;old_locus_tag=D5F88_03605 NZ_QYTI01000030.1 Protein Homology CDS 12860 13294 . - 0 ID=cds-WP_000665410.1;Parent=gene-D5F88_RS03600;Dbxref=GenBank:WP_000665410.1;Name=WP_000665410.1;Ontology_term=GO:0006979,GO:0030091,GO:0033743;gbkey=CDS;gene=msrB;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000665406.1;locus_tag=D5F88_RS03600;product=peptide-methionine (R)-S-oxide reductase MsrB;protein_id=WP_000665410.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 13294 13758 . - . ID=gene-D5F88_RS03605;Name=D5F88_RS03605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03605;old_locus_tag=D5F88_03610 NZ_QYTI01000030.1 Protein Homology CDS 13294 13758 . - 0 ID=cds-WP_016480717.1;Parent=gene-D5F88_RS03605;Dbxref=GenBank:WP_016480717.1;Name=WP_016480717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000621138.1;locus_tag=D5F88_RS03605;product=GNAT family N-acetyltransferase;protein_id=WP_016480717.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 13767 14426 . - . ID=gene-D5F88_RS03610;Name=D5F88_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03610;old_locus_tag=D5F88_03615 NZ_QYTI01000030.1 Protein Homology CDS 13767 14426 . - 0 ID=cds-WP_016480716.1;Parent=gene-D5F88_RS03610;Dbxref=GenBank:WP_016480716.1;Name=WP_016480716.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001884604.1;locus_tag=D5F88_RS03610;product=HD domain-containing protein;protein_id=WP_016480716.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 14526 17159 . - . ID=gene-D5F88_RS03615;Name=D5F88_RS03615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03615;old_locus_tag=D5F88_03620 NZ_QYTI01000030.1 Protein Homology CDS 14526 17159 . - 0 ID=cds-WP_016502838.1;Parent=gene-D5F88_RS03615;Dbxref=GenBank:WP_016502838.1;Name=WP_016502838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000678288.1;locus_tag=D5F88_RS03615;product=pneumococcal-type histidine triad protein;protein_id=WP_016502838.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 17406 19238 . - . ID=gene-D5F88_RS03620;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=D5F88_RS03620;old_locus_tag=D5F88_03625 NZ_QYTI01000030.1 Protein Homology CDS 17406 19238 . - 0 ID=cds-WP_001019133.1;Parent=gene-D5F88_RS03620;Dbxref=GenBank:WP_001019133.1;Name=WP_001019133.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645216.1;locus_tag=D5F88_RS03620;product=translation elongation factor 4;protein_id=WP_001019133.1;transl_table=11 NZ_QYTI01000030.1 RefSeq gene 19374 19790 . - . ID=gene-D5F88_RS03625;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=D5F88_RS03625;old_locus_tag=D5F88_03630 NZ_QYTI01000030.1 Protein Homology CDS 19374 19790 . - 0 ID=cds-WP_000438313.1;Parent=gene-D5F88_RS03625;Dbxref=GenBank:WP_000438313.1;Name=WP_000438313.1;Ontology_term=GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480713.1;locus_tag=D5F88_RS03625;product=nucleoside-diphosphate kinase;protein_id=WP_000438313.1;transl_table=11 NZ_QYTI01000030.1 RefSeq pseudogene 20101 20360 . - . ID=gene-D5F88_RS11935;Name=D5F88_RS11935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11935;pseudo=true NZ_QYTI01000030.1 Protein Homology CDS 20101 20360 . - 0 ID=cds-D5F88_RS11935;Parent=gene-D5F88_RS11935;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000900526.1;locus_tag=D5F88_RS11935;product=hypothetical protein;pseudo=true;transl_table=11 NZ_QYTI01000030.1 RefSeq direct_repeat 20413 20976 . + . ID=id-NZ_QYTI01000030.1:20413..20976;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=20413..20448;rpt_unit_seq=gttttggaaccattcgaaacagcacagctctaaaac ##sequence-region NZ_QYTI01000031.1 1 1058 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000031.1 RefSeq region 1 1058 . + . ID=NZ_QYTI01000031.1:1..1058;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000031.1 RefSeq pseudogene 14 406 . - . ID=gene-D5F88_RS03635;Name=D5F88_RS03635;end_range=406,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03635;old_locus_tag=D5F88_03640;partial=true;pseudo=true NZ_QYTI01000031.1 Protein Homology CDS 14 406 . - 0 ID=cds-D5F88_RS03635;Parent=gene-D5F88_RS03635;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0008080;end_range=406,.;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648252.1;locus_tag=D5F88_RS03635;partial=true;product=GNAT family N-acetyltransferase;pseudo=true;transl_table=11 NZ_QYTI01000031.1 RefSeq pseudogene 479 1058 . + . ID=gene-D5F88_RS03640;Name=D5F88_RS03640;end_range=1058,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03640;old_locus_tag=D5F88_03645;partial=true;pseudo=true NZ_QYTI01000031.1 Protein Homology CDS 479 1058 . + 0 ID=cds-D5F88_RS03640;Parent=gene-D5F88_RS03640;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=1058,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS03640;partial=true;product=transposase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000032.1 1 80523 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000032.1 RefSeq region 1 80523 . + . ID=NZ_QYTI01000032.1:1..80523;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000032.1 RefSeq gene 1 274 . - . ID=gene-D5F88_RS03645;Name=D5F88_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03645;old_locus_tag=D5F88_03650;partial=true;start_range=.,1 NZ_QYTI01000032.1 Protein Homology CDS 1 274 . - 0 ID=cds-WP_142997433.1;Parent=gene-D5F88_RS03645;Dbxref=GenBank:WP_142997433.1;Name=WP_142997433.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644439.1;locus_tag=D5F88_RS03645;partial=true;product=PTS sugar transporter subunit IIB;protein_id=WP_142997433.1;start_range=.,1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 291 614 . - . ID=gene-D5F88_RS03650;Name=D5F88_RS03650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03650;old_locus_tag=D5F88_03655 NZ_QYTI01000032.1 Protein Homology CDS 291 614 . - 0 ID=cds-WP_000402898.1;Parent=gene-D5F88_RS03650;Dbxref=GenBank:WP_000402898.1;Name=WP_000402898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000402898.1;locus_tag=D5F88_RS03650;product=PTS lactose/cellobiose transporter subunit IIA;protein_id=WP_000402898.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 818 1801 . - . ID=gene-D5F88_RS03655;Name=D5F88_RS03655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03655;old_locus_tag=D5F88_03660 NZ_QYTI01000032.1 Protein Homology CDS 818 1801 . - 0 ID=cds-WP_000764456.1;Parent=gene-D5F88_RS03655;Dbxref=GenBank:WP_000764456.1;Name=WP_000764456.1;Ontology_term=GO:0006355,GO:0003677,GO:0030246;gbkey=CDS;go_function=DNA binding|0003677||IEA,carbohydrate binding|0030246||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000764457.1;locus_tag=D5F88_RS03655;product=sugar-binding transcriptional regulator;protein_id=WP_000764456.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 1920 2675 . - . ID=gene-D5F88_RS03660;Name=D5F88_RS03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03660;old_locus_tag=D5F88_03665 NZ_QYTI01000032.1 Protein Homology CDS 1920 2675 . - 0 ID=cds-WP_001080743.1;Parent=gene-D5F88_RS03660;Dbxref=GenBank:WP_001080743.1;Name=WP_001080743.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001080747.1;locus_tag=D5F88_RS03660;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_001080743.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 2796 3572 . + . ID=gene-D5F88_RS03665;Name=D5F88_RS03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03665;old_locus_tag=D5F88_03670 NZ_QYTI01000032.1 Protein Homology CDS 2796 3572 . + 0 ID=cds-WP_086163221.1;Parent=gene-D5F88_RS03665;Dbxref=GenBank:WP_086163221.1;Name=WP_086163221.1;Ontology_term=GO:0043687,GO:0051539,GO:1904047;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=post-translational protein modification|0043687||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647428.1;locus_tag=D5F88_RS03665;product=glycyl-radical enzyme activating protein;protein_id=WP_086163221.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 3618 3974 . - . ID=gene-D5F88_RS03670;Name=D5F88_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03670;old_locus_tag=D5F88_03675 NZ_QYTI01000032.1 Protein Homology CDS 3618 3974 . - 0 ID=cds-WP_000689608.1;Parent=gene-D5F88_RS03670;Dbxref=GenBank:WP_000689608.1;Name=WP_000689608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644186.1;locus_tag=D5F88_RS03670;product=S1 RNA-binding domain-containing protein;protein_id=WP_000689608.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 3976 5376 . - . ID=gene-D5F88_RS03675;Name=D5F88_RS03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03675;old_locus_tag=D5F88_03680 NZ_QYTI01000032.1 Protein Homology CDS 3976 5376 . - 0 ID=cds-WP_000339135.1;Parent=gene-D5F88_RS03675;Dbxref=GenBank:WP_000339135.1;Name=WP_000339135.1;Ontology_term=GO:0000413,GO:0003755,GO:0016791;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,phosphatase activity|0016791||IEA;go_process=protein peptidyl-prolyl isomerization|0000413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058358.1;locus_tag=D5F88_RS03675;product=bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase;protein_id=WP_000339135.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 5418 6059 . - . ID=gene-D5F88_RS03680;Name=D5F88_RS03680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03680;old_locus_tag=D5F88_03685 NZ_QYTI01000032.1 Protein Homology CDS 5418 6059 . - 0 ID=cds-WP_000357891.1;Parent=gene-D5F88_RS03680;Dbxref=GenBank:WP_000357891.1;Name=WP_000357891.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480307.1;locus_tag=D5F88_RS03680;product=response regulator transcription factor;protein_id=WP_000357891.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 6052 7071 . - . ID=gene-D5F88_RS03685;Name=D5F88_RS03685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03685;old_locus_tag=D5F88_03690 NZ_QYTI01000032.1 Protein Homology CDS 6052 7071 . - 0 ID=cds-WP_016502510.1;Parent=gene-D5F88_RS03685;Dbxref=GenBank:WP_016502510.1;Name=WP_016502510.1;Ontology_term=GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645977.1;locus_tag=D5F88_RS03685;product=sensor histidine kinase;protein_id=WP_016502510.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 7068 7763 . - . ID=gene-D5F88_RS03690;Name=liaF;gbkey=Gene;gene=liaF;gene_biotype=protein_coding;locus_tag=D5F88_RS03690;old_locus_tag=D5F88_03695 NZ_QYTI01000032.1 Protein Homology CDS 7068 7763 . - 0 ID=cds-WP_000714456.1;Parent=gene-D5F88_RS03690;Dbxref=GenBank:WP_000714456.1;Name=WP_000714456.1;gbkey=CDS;gene=liaF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000714455.1;locus_tag=D5F88_RS03690;product=cell wall-active antibiotics response protein LiaF;protein_id=WP_000714456.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 7922 9877 . - . ID=gene-D5F88_RS03695;Name=pknB;gbkey=Gene;gene=pknB;gene_biotype=protein_coding;locus_tag=D5F88_RS03695;old_locus_tag=D5F88_03700 NZ_QYTI01000032.1 Protein Homology CDS 7922 9877 . - 0 ID=cds-WP_016502509.1;Parent=gene-D5F88_RS03695;Dbxref=GenBank:WP_016502509.1;Name=WP_016502509.1;Ontology_term=GO:0006468,GO:0004672,GO:0005524;gbkey=CDS;gene=pknB;go_function=protein kinase activity|0004672||IEA,ATP binding|0005524||IEA;go_process=protein phosphorylation|0006468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000614563.1;locus_tag=D5F88_RS03695;product=Stk1 family PASTA domain-containing Ser/Thr kinase;protein_id=WP_016502509.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 9877 10614 . - . ID=gene-D5F88_RS03700;Name=D5F88_RS03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03700;old_locus_tag=D5F88_03705 NZ_QYTI01000032.1 Protein Homology CDS 9877 10614 . - 0 ID=cds-WP_000406234.1;Parent=gene-D5F88_RS03700;Dbxref=GenBank:WP_000406234.1;Name=WP_000406234.1;Ontology_term=GO:0006470,GO:0004722;gbkey=CDS;go_function=protein serine/threonine phosphatase activity|0004722||IEA;go_process=protein dephosphorylation|0006470||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000406232.1;locus_tag=D5F88_RS03700;product=Stp1/IreP family PP2C-type Ser/Thr phosphatase;protein_id=WP_000406234.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 10652 11974 . - . ID=gene-D5F88_RS03705;Name=rsmB;gbkey=Gene;gene=rsmB;gene_biotype=protein_coding;locus_tag=D5F88_RS03705;old_locus_tag=D5F88_03710 NZ_QYTI01000032.1 Protein Homology CDS 10652 11974 . - 0 ID=cds-WP_016502508.1;Parent=gene-D5F88_RS03705;Dbxref=GenBank:WP_016502508.1;Name=WP_016502508.1;Ontology_term=GO:0001510,GO:0006355,GO:0003723,GO:0008168;gbkey=CDS;gene=rsmB;go_function=RNA binding|0003723||IEA,methyltransferase activity|0008168||IEA;go_process=RNA methylation|0001510||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001262608.1;locus_tag=D5F88_RS03705;product=16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;protein_id=WP_016502508.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 11964 12899 . - . ID=gene-D5F88_RS03710;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=D5F88_RS03710;old_locus_tag=D5F88_03715 NZ_QYTI01000032.1 Protein Homology CDS 11964 12899 . - 0 ID=cds-WP_016502507.1;Parent=gene-D5F88_RS03710;Dbxref=GenBank:WP_016502507.1;Name=WP_016502507.1;Ontology_term=GO:0071951,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=conversion of methionyl-tRNA to N-formyl-methionyl-tRNA|0071951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000163891.1;locus_tag=D5F88_RS03710;product=methionyl-tRNA formyltransferase;protein_id=WP_016502507.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 12946 15336 . - . ID=gene-D5F88_RS03715;Name=D5F88_RS03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03715;old_locus_tag=D5F88_03720 NZ_QYTI01000032.1 Protein Homology CDS 12946 15336 . - 0 ID=cds-WP_016502506.1;Parent=gene-D5F88_RS03715;Dbxref=GenBank:WP_016502506.1;Name=WP_016502506.1;Ontology_term=GO:0006260,GO:0003677,GO:0003678,GO:0005524;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000101529.1;locus_tag=D5F88_RS03715;product=primosomal protein N';protein_id=WP_016502506.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 15410 15724 . - . ID=gene-D5F88_RS03720;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=D5F88_RS03720;old_locus_tag=D5F88_03725 NZ_QYTI01000032.1 Protein Homology CDS 15410 15724 . - 0 ID=cds-WP_000979239.1;Parent=gene-D5F88_RS03720;Dbxref=GenBank:WP_000979239.1;Name=WP_000979239.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;gene=rpoZ;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000979238.1;locus_tag=D5F88_RS03720;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_000979239.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 15747 16376 . - . ID=gene-D5F88_RS03725;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=D5F88_RS03725;old_locus_tag=D5F88_03730 NZ_QYTI01000032.1 Protein Homology CDS 15747 16376 . - 0 ID=cds-WP_000003861.1;Parent=gene-D5F88_RS03725;Dbxref=GenBank:WP_000003861.1;Name=WP_000003861.1;Ontology_term=GO:0006163,GO:0004385;gbkey=CDS;gene=gmk;go_function=GMP kinase activity|0004385||IEA;go_process=purine nucleotide metabolic process|0006163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000003862.1;locus_tag=D5F88_RS03725;product=guanylate kinase;protein_id=WP_000003861.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 16543 17247 . - . ID=gene-D5F88_RS03730;Name=D5F88_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03730;old_locus_tag=D5F88_03735 NZ_QYTI01000032.1 Protein Homology CDS 16543 17247 . - 0 ID=cds-WP_016502505.1;Parent=gene-D5F88_RS03730;Dbxref=GenBank:WP_016502505.1;Name=WP_016502505.1;Ontology_term=GO:0071805,GO:0005267,GO:0015252,GO:0022841;gbkey=CDS;go_function=potassium channel activity|0005267||IEA,proton channel activity|0015252||IEA,potassium ion leak channel activity|0022841||IEA;go_process=potassium ion transmembrane transport|0071805||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001168921.1;locus_tag=D5F88_RS03730;product=TMEM175 family protein;protein_id=WP_016502505.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 17296 17886 . - . ID=gene-D5F88_RS03735;Name=D5F88_RS03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03735;old_locus_tag=D5F88_03740 NZ_QYTI01000032.1 Protein Homology CDS 17296 17886 . - 0 ID=cds-WP_016502504.1;Parent=gene-D5F88_RS03735;Dbxref=GenBank:WP_016502504.1;Name=WP_016502504.1;Ontology_term=GO:0000160,GO:0006355,GO:0007165,GO:0000156,GO:0003677,GO:0003700;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502504.1;locus_tag=D5F88_RS03735;product=response regulator transcription factor;protein_id=WP_016502504.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 17888 18973 . - . ID=gene-D5F88_RS03740;Name=D5F88_RS03740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03740;old_locus_tag=D5F88_03745 NZ_QYTI01000032.1 Protein Homology CDS 17888 18973 . - 0 ID=cds-WP_016502503.1;Parent=gene-D5F88_RS03740;Dbxref=GenBank:WP_016502503.1;Name=WP_016502503.1;Ontology_term=GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000791351.1;locus_tag=D5F88_RS03740;product=sensor histidine kinase;protein_id=WP_016502503.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 18970 19710 . - . ID=gene-D5F88_RS03745;Name=D5F88_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03745;old_locus_tag=D5F88_03750 NZ_QYTI01000032.1 Protein Homology CDS 18970 19710 . - 0 ID=cds-WP_001217939.1;Parent=gene-D5F88_RS03745;Dbxref=GenBank:WP_001217939.1;Name=WP_001217939.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285114.1;locus_tag=D5F88_RS03745;product=ABC transporter permease;protein_id=WP_001217939.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 19697 20593 . - . ID=gene-D5F88_RS03750;Name=D5F88_RS03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03750;old_locus_tag=D5F88_03755 NZ_QYTI01000032.1 Protein Homology CDS 19697 20593 . - 0 ID=cds-WP_086163219.1;Parent=gene-D5F88_RS03750;Dbxref=GenBank:WP_086163219.1;Name=WP_086163219.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001029972.1;locus_tag=D5F88_RS03750;product=ABC transporter ATP-binding protein;protein_id=WP_086163219.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 20722 22329 . - . ID=gene-D5F88_RS03760;Name=D5F88_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03760;old_locus_tag=D5F88_03765 NZ_QYTI01000032.1 Protein Homology CDS 20722 22329 . - 0 ID=cds-WP_000481839.1;Parent=gene-D5F88_RS03760;Dbxref=GenBank:WP_000481839.1;Name=WP_000481839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771814.1;locus_tag=D5F88_RS03760;product=ribonuclease Y;protein_id=WP_000481839.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 22518 23000 . + . ID=gene-D5F88_RS03765;Name=D5F88_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03765;old_locus_tag=D5F88_03770 NZ_QYTI01000032.1 Protein Homology CDS 22518 23000 . + 0 ID=cds-WP_000159885.1;Parent=gene-D5F88_RS03765;Dbxref=GenBank:WP_000159885.1;Name=WP_000159885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002885585.1;locus_tag=D5F88_RS03765;product=S-ribosylhomocysteine lyase;protein_id=WP_000159885.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 23225 24712 . - . ID=gene-D5F88_RS03770;Name=D5F88_RS03770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03770;old_locus_tag=D5F88_03775 NZ_QYTI01000032.1 Protein Homology CDS 23225 24712 . - 0 ID=cds-WP_016502498.1;Parent=gene-D5F88_RS03770;Dbxref=GenBank:WP_016502498.1;Name=WP_016502498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001287870.1;locus_tag=D5F88_RS03770;product=cell division site-positioning protein MapZ family protein;protein_id=WP_016502498.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 24725 25879 . - . ID=gene-D5F88_RS03775;Name=D5F88_RS03775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03775;old_locus_tag=D5F88_03780 NZ_QYTI01000032.1 Protein Homology CDS 24725 25879 . - 0 ID=cds-WP_000664848.1;Parent=gene-D5F88_RS03775;Dbxref=GenBank:WP_000664848.1;Name=WP_000664848.1;Ontology_term=GO:0001510,GO:0008757,GO:1904047;gbkey=CDS;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000664853.1;locus_tag=D5F88_RS03775;product=THUMP domain-containing class I SAM-dependent RNA methyltransferase;protein_id=WP_000664848.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 25962 26330 . - . ID=gene-D5F88_RS03780;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=D5F88_RS03780;old_locus_tag=D5F88_03785 NZ_QYTI01000032.1 cmsearch RNase_P_RNA 25962 26330 . - . ID=rna-D5F88_RS03780;Parent=gene-D5F88_RS03780;Dbxref=RFAM:RF00011;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS03780;product=RNase P RNA component class B NZ_QYTI01000032.1 cmsearch exon 25962 26330 . - . ID=exon-D5F88_RS03780-1;Parent=rna-D5F88_RS03780;Dbxref=RFAM:RF00011;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS03780;product=RNase P RNA component class B NZ_QYTI01000032.1 RefSeq gene 26349 26681 . - . ID=gene-D5F88_RS03785;Name=gpsB;gbkey=Gene;gene=gpsB;gene_biotype=protein_coding;locus_tag=D5F88_RS03785;old_locus_tag=D5F88_03790 NZ_QYTI01000032.1 Protein Homology CDS 26349 26681 . - 0 ID=cds-WP_000146544.1;Parent=gene-D5F88_RS03785;Dbxref=GenBank:WP_000146544.1;Name=WP_000146544.1;gbkey=CDS;gene=gpsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000146543.1;locus_tag=D5F88_RS03785;product=cell division regulator GpsB;protein_id=WP_000146544.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 26802 27320 . - . ID=gene-D5F88_RS03795;Name=D5F88_RS03795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03795;old_locus_tag=D5F88_03800 NZ_QYTI01000032.1 Protein Homology CDS 26802 27320 . - 0 ID=cds-WP_000843096.1;Parent=gene-D5F88_RS03795;Dbxref=GenBank:WP_000843096.1;Name=WP_000843096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000843102.1;locus_tag=D5F88_RS03795;product=DUF1273 domain-containing protein;protein_id=WP_000843096.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 27395 27994 . + . ID=gene-D5F88_RS03800;Name=recU;gbkey=Gene;gene=recU;gene_biotype=protein_coding;locus_tag=D5F88_RS03800;old_locus_tag=D5F88_03805 NZ_QYTI01000032.1 Protein Homology CDS 27395 27994 . + 0 ID=cds-WP_000248792.1;Parent=gene-D5F88_RS03800;Dbxref=GenBank:WP_000248792.1;Name=WP_000248792.1;gbkey=CDS;gene=recU;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000248791.1;locus_tag=D5F88_RS03800;product=Holliday junction resolvase RecU;protein_id=WP_000248792.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 27981 30221 . + . ID=gene-D5F88_RS03805;Name=pbp1a;gbkey=Gene;gene=pbp1a;gene_biotype=protein_coding;locus_tag=D5F88_RS03805;old_locus_tag=D5F88_03810 NZ_QYTI01000032.1 Protein Homology CDS 27981 30221 . + 0 ID=cds-WP_086163218.1;Parent=gene-D5F88_RS03805;Dbxref=GenBank:WP_086163218.1;Name=WP_086163218.1;Ontology_term=GO:0008658;gbkey=CDS;gene=pbp1a;go_function=penicillin binding|0008658||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000628363.1;locus_tag=D5F88_RS03805;product=penicillin-binding protein PBP1A;protein_id=WP_086163218.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 30267 31601 . - . ID=gene-D5F88_RS03810;Name=pepC;gbkey=Gene;gene=pepC;gene_biotype=protein_coding;locus_tag=D5F88_RS03810;old_locus_tag=D5F88_03815 NZ_QYTI01000032.1 Protein Homology CDS 30267 31601 . - 0 ID=cds-WP_016502493.1;Parent=gene-D5F88_RS03810;Dbxref=GenBank:WP_016502493.1;Name=WP_016502493.1;gbkey=CDS;gene=pepC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000041114.1;locus_tag=D5F88_RS03810;product=aminopeptidase C;protein_id=WP_016502493.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 31714 32535 . - . ID=gene-D5F88_RS03815;Name=nadE;gbkey=Gene;gene=nadE;gene_biotype=protein_coding;locus_tag=D5F88_RS03815;old_locus_tag=D5F88_03820 NZ_QYTI01000032.1 Protein Homology CDS 31714 32535 . - 0 ID=cds-WP_000174854.1;Parent=gene-D5F88_RS03815;Dbxref=GenBank:WP_000174854.1;Name=WP_000174854.1;Ontology_term=GO:0009435,GO:0003952,GO:0004359,GO:0008795;gbkey=CDS;gene=nadE;go_function=NAD+ synthase (glutamine-hydrolyzing) activity|0003952||IEA,glutaminase activity|0004359||IEA,NAD+ synthase activity|0008795||IEA;go_process=NAD+ biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002949400.1;locus_tag=D5F88_RS03815;product=ammonia-dependent NAD(+) synthetase;protein_id=WP_000174854.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 32532 33992 . - . ID=gene-D5F88_RS03820;Name=D5F88_RS03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03820;old_locus_tag=D5F88_03825 NZ_QYTI01000032.1 Protein Homology CDS 32532 33992 . - 0 ID=cds-WP_016502492.1;Parent=gene-D5F88_RS03820;Dbxref=GenBank:WP_016502492.1;Name=WP_016502492.1;Ontology_term=GO:0009435,GO:0004516;gbkey=CDS;go_function=nicotinate phosphoribosyltransferase activity|0004516||IEA;go_process=NAD+ biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649304.1;locus_tag=D5F88_RS03820;product=nicotinate phosphoribosyltransferase;protein_id=WP_016502492.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 34150 35064 . - . ID=gene-D5F88_RS03825;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=D5F88_RS03825;old_locus_tag=D5F88_03830 NZ_QYTI01000032.1 Protein Homology CDS 34150 35064 . - 0 ID=cds-WP_000272353.1;Parent=gene-D5F88_RS03825;Dbxref=GenBank:WP_000272353.1;Name=WP_000272353.1;Ontology_term=GO:0019430,GO:0004791,GO:0071949,GO:0005737;gbkey=CDS;gene=trxB;go_component=cytoplasm|0005737||IEA;go_function=thioredoxin-disulfide reductase (NADPH) activity|0004791||IEA,FAD binding|0071949||IEA;go_process=removal of superoxide radicals|0019430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480293.1;locus_tag=D5F88_RS03825;product=thioredoxin-disulfide reductase;protein_id=WP_000272353.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 35133 35357 . - . ID=gene-D5F88_RS03830;Name=D5F88_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03830;old_locus_tag=D5F88_03835 NZ_QYTI01000032.1 Protein Homology CDS 35133 35357 . - 0 ID=cds-WP_000478227.1;Parent=gene-D5F88_RS03830;Dbxref=GenBank:WP_000478227.1;Name=WP_000478227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646607.1;locus_tag=D5F88_RS03830;product=DUF4059 family protein;protein_id=WP_000478227.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 35479 36222 . - . ID=gene-D5F88_RS03835;Name=D5F88_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03835;old_locus_tag=D5F88_03840 NZ_QYTI01000032.1 Protein Homology CDS 35479 36222 . - 0 ID=cds-WP_000593862.1;Parent=gene-D5F88_RS03835;Dbxref=GenBank:WP_000593862.1;Name=WP_000593862.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768437.1;locus_tag=D5F88_RS03835;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_000593862.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 36222 37025 . - . ID=gene-D5F88_RS03840;Name=D5F88_RS03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03840;old_locus_tag=D5F88_03845 NZ_QYTI01000032.1 Protein Homology CDS 36222 37025 . - 0 ID=cds-WP_016502491.1;Parent=gene-D5F88_RS03840;Dbxref=GenBank:WP_016502491.1;Name=WP_016502491.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001071292.1;locus_tag=D5F88_RS03840;product=amino acid ABC transporter permease;protein_id=WP_016502491.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 37120 37932 . - . ID=gene-D5F88_RS03845;Name=D5F88_RS03845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03845;old_locus_tag=D5F88_03850 NZ_QYTI01000032.1 Protein Homology CDS 37120 37932 . - 0 ID=cds-WP_016502490.1;Parent=gene-D5F88_RS03845;Dbxref=GenBank:WP_016502490.1;Name=WP_016502490.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000473469.1;locus_tag=D5F88_RS03845;product=transporter substrate-binding domain-containing protein;protein_id=WP_016502490.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 38070 39413 . - . ID=gene-D5F88_RS03850;Name=D5F88_RS03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03850;old_locus_tag=D5F88_03855 NZ_QYTI01000032.1 Protein Homology CDS 38070 39413 . - 0 ID=cds-WP_000008553.1;Parent=gene-D5F88_RS03850;Dbxref=GenBank:WP_000008553.1;Name=WP_000008553.1;Ontology_term=GO:0003676,GO:0005524,GO:0016887;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008535518.1;locus_tag=D5F88_RS03850;product=DEAD/DEAH box helicase;protein_id=WP_000008553.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 39511 40521 . - . ID=gene-D5F88_RS03855;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=D5F88_RS03855;old_locus_tag=D5F88_03860 NZ_QYTI01000032.1 Protein Homology CDS 39511 40521 . - 0 ID=cds-WP_000480019.1;Parent=gene-D5F88_RS03855;Dbxref=GenBank:WP_000480019.1;Name=WP_000480019.1;Ontology_term=GO:0009252,GO:0008963,GO:0016020;gbkey=CDS;gene=mraY;go_component=membrane|0016020||IEA;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000480019.1;locus_tag=D5F88_RS03855;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_000480019.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 40523 42781 . - . ID=gene-D5F88_RS03860;Name=pbp2x;gbkey=Gene;gene=pbp2x;gene_biotype=protein_coding;gene_synonym=pbpX;locus_tag=D5F88_RS03860;old_locus_tag=D5F88_03865 NZ_QYTI01000032.1 Protein Homology CDS 40523 42781 . - 0 ID=cds-WP_124773250.1;Parent=gene-D5F88_RS03860;Dbxref=GenBank:WP_124773250.1;Name=WP_124773250.1;Ontology_term=GO:0008658;gbkey=CDS;gene=pbp2x;go_function=penicillin binding|0008658||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647338.1;locus_tag=D5F88_RS03860;product=penicillin-binding protein PBP2X;protein_id=WP_124773250.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 42785 43111 . - . ID=gene-D5F88_RS03865;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;locus_tag=D5F88_RS03865;old_locus_tag=D5F88_03870 NZ_QYTI01000032.1 Protein Homology CDS 42785 43111 . - 0 ID=cds-WP_000180568.1;Parent=gene-D5F88_RS03865;Dbxref=GenBank:WP_000180568.1;Name=WP_000180568.1;Ontology_term=GO:0000910,GO:0016020;gbkey=CDS;gene=ftsL;go_component=membrane|0016020||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000180570.1;locus_tag=D5F88_RS03865;product=cell division protein FtsL;protein_id=WP_000180568.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 43126 44073 . - . ID=gene-D5F88_RS03870;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=D5F88_RS03870;old_locus_tag=D5F88_03875 NZ_QYTI01000032.1 Protein Homology CDS 43126 44073 . - 0 ID=cds-WP_086163216.1;Parent=gene-D5F88_RS03870;Dbxref=GenBank:WP_086163216.1;Name=WP_086163216.1;Ontology_term=GO:0000154,GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;go_process=rRNA modification|0000154||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631664.1;locus_tag=D5F88_RS03870;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=WP_086163216.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 44156 45409 . - . ID=gene-D5F88_RS03875;Name=D5F88_RS03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03875;old_locus_tag=D5F88_03880 NZ_QYTI01000032.1 Protein Homology CDS 44156 45409 . - 0 ID=cds-WP_000221008.1;Parent=gene-D5F88_RS03875;Dbxref=GenBank:WP_000221008.1;Name=WP_000221008.1;Ontology_term=GO:0055129,GO:0004350,GO:0016620;gbkey=CDS;go_function=glutamate-5-semialdehyde dehydrogenase activity|0004350||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=L-proline biosynthetic process|0055129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000221014.1;locus_tag=D5F88_RS03875;product=glutamate-5-semialdehyde dehydrogenase;protein_id=WP_000221008.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 45419 46222 . - . ID=gene-D5F88_RS03880;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=D5F88_RS03880;old_locus_tag=D5F88_03885 NZ_QYTI01000032.1 Protein Homology CDS 45419 46222 . - 0 ID=cds-WP_016502487.1;Parent=gene-D5F88_RS03880;Dbxref=GenBank:WP_016502487.1;Name=WP_016502487.1;Ontology_term=GO:0055129,GO:0004349,GO:0005737;gbkey=CDS;gene=proB;go_component=cytoplasm|0005737||IEA;go_function=glutamate 5-kinase activity|0004349||IEA;go_process=L-proline biosynthetic process|0055129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502487.1;locus_tag=D5F88_RS03880;product=glutamate 5-kinase;protein_id=WP_016502487.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 46363 47748 . + . ID=gene-D5F88_RS03885;Name=D5F88_RS03885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03885;old_locus_tag=D5F88_03890 NZ_QYTI01000032.1 Protein Homology CDS 46363 47748 . + 0 ID=cds-WP_016480287.1;Parent=gene-D5F88_RS03885;Dbxref=GenBank:WP_016480287.1;Name=WP_016480287.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643962.1;locus_tag=D5F88_RS03885;product=PTS transporter subunit EIIC;protein_id=WP_016480287.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 47956 49560 . - . ID=gene-D5F88_RS03890;Name=D5F88_RS03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03890;old_locus_tag=D5F88_03895 NZ_QYTI01000032.1 Protein Homology CDS 47956 49560 . - 0 ID=cds-WP_016502486.1;Parent=gene-D5F88_RS03890;Dbxref=GenBank:WP_016502486.1;Name=WP_016502486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644442.1;locus_tag=D5F88_RS03890;product=ABC transporter permease protein;protein_id=WP_016502486.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 49564 50298 . - . ID=gene-D5F88_RS03895;Name=D5F88_RS03895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03895;old_locus_tag=D5F88_03900 NZ_QYTI01000032.1 Protein Homology CDS 49564 50298 . - 0 ID=cds-WP_016502485.1;Parent=gene-D5F88_RS03895;Dbxref=GenBank:WP_016502485.1;Name=WP_016502485.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644658.1;locus_tag=D5F88_RS03895;product=ABC transporter ATP-binding protein;protein_id=WP_016502485.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 50318 50623 . - . ID=gene-D5F88_RS03900;Name=D5F88_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03900;old_locus_tag=D5F88_03905 NZ_QYTI01000032.1 Protein Homology CDS 50318 50623 . - 0 ID=cds-WP_000711207.1;Parent=gene-D5F88_RS03900;Dbxref=GenBank:WP_000711207.1;Name=WP_000711207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000711205.1;locus_tag=D5F88_RS03900;product=bacteriocin immunity protein;protein_id=WP_000711207.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 50835 52820 . - . ID=gene-D5F88_RS03905;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=D5F88_RS03905;old_locus_tag=D5F88_03910 NZ_QYTI01000032.1 Protein Homology CDS 50835 52820 . - 0 ID=cds-WP_016502483.1;Parent=gene-D5F88_RS03905;Dbxref=GenBank:WP_016502483.1;Name=WP_016502483.1;Ontology_term=GO:0004802;gbkey=CDS;gene=tkt;go_function=transketolase activity|0004802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771905.1;locus_tag=D5F88_RS03905;product=transketolase;protein_id=WP_016502483.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 52945 54375 . - . ID=gene-D5F88_RS03910;Name=D5F88_RS03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03910;old_locus_tag=D5F88_03915 NZ_QYTI01000032.1 Protein Homology CDS 52945 54375 . - 0 ID=cds-WP_086163215.1;Parent=gene-D5F88_RS03910;Dbxref=GenBank:WP_086163215.1;Name=WP_086163215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001217288.1;locus_tag=D5F88_RS03910;product=helix-turn-helix domain-containing protein;protein_id=WP_086163215.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 54366 55703 . - . ID=gene-D5F88_RS03915;Name=D5F88_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03915;old_locus_tag=D5F88_03920 NZ_QYTI01000032.1 Protein Homology CDS 54366 55703 . - 0 ID=cds-WP_016480284.1;Parent=gene-D5F88_RS03915;Dbxref=GenBank:WP_016480284.1;Name=WP_016480284.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000137245.1;locus_tag=D5F88_RS03915;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_016480284.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 55791 56489 . - . ID=gene-D5F88_RS03920;Name=D5F88_RS03920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03920;old_locus_tag=D5F88_03925 NZ_QYTI01000032.1 Protein Homology CDS 55791 56489 . - 0 ID=cds-WP_016480283.1;Parent=gene-D5F88_RS03920;Dbxref=GenBank:WP_016480283.1;Name=WP_016480283.1;Ontology_term=GO:0055085,GO:0015267;gbkey=CDS;go_function=channel activity|0015267||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000350768.1;locus_tag=D5F88_RS03920;product=MIP/aquaporin family protein;protein_id=WP_016480283.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 56501 58330 . - . ID=gene-D5F88_RS03925;Name=glpO;gbkey=Gene;gene=glpO;gene_biotype=protein_coding;locus_tag=D5F88_RS03925;old_locus_tag=D5F88_03930 NZ_QYTI01000032.1 Protein Homology CDS 56501 58330 . - 0 ID=cds-WP_086163212.1;Parent=gene-D5F88_RS03925;Dbxref=GenBank:WP_086163212.1;Name=WP_086163212.1;Ontology_term=GO:0006072,GO:0004368;gbkey=CDS;gene=glpO;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646203.1;locus_tag=D5F88_RS03925;product=type 1 glycerol-3-phosphate oxidase;protein_id=WP_086163212.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 58343 59851 . - . ID=gene-D5F88_RS03930;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=D5F88_RS03930;old_locus_tag=D5F88_03935 NZ_QYTI01000032.1 Protein Homology CDS 58343 59851 . - 0 ID=cds-WP_086163211.1;Parent=gene-D5F88_RS03930;Dbxref=GenBank:WP_086163211.1;Name=WP_086163211.1;Ontology_term=GO:0006072,GO:0004370;gbkey=CDS;gene=glpK;go_function=glycerol kinase activity|0004370||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000093523.1;locus_tag=D5F88_RS03930;product=glycerol kinase GlpK;protein_id=WP_086163211.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 59966 60229 . - . ID=gene-D5F88_RS03935;Name=D5F88_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03935;old_locus_tag=D5F88_03940 NZ_QYTI01000032.1 Protein Homology CDS 59966 60229 . - 0 ID=cds-WP_016480280.1;Parent=gene-D5F88_RS03935;Dbxref=GenBank:WP_016480280.1;Name=WP_016480280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000571497.1;locus_tag=D5F88_RS03935;product=DUF1294 domain-containing protein;protein_id=WP_016480280.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 60318 60575 . - . ID=gene-D5F88_RS03940;Name=D5F88_RS03940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03940;old_locus_tag=D5F88_03945 NZ_QYTI01000032.1 Protein Homology CDS 60318 60575 . - 0 ID=cds-WP_000371297.1;Parent=gene-D5F88_RS03940;Dbxref=GenBank:WP_000371297.1;Name=WP_000371297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002983550.1;locus_tag=D5F88_RS03940;product=DUF896 family protein;protein_id=WP_000371297.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 60587 62626 . - . ID=gene-D5F88_RS03945;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=D5F88_RS03945;old_locus_tag=D5F88_03950 NZ_QYTI01000032.1 Protein Homology CDS 60587 62626 . - 0 ID=cds-WP_086163210.1;Parent=gene-D5F88_RS03945;Dbxref=GenBank:WP_086163210.1;Name=WP_086163210.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768433.1;locus_tag=D5F88_RS03945;product=glycine--tRNA ligase subunit beta;protein_id=WP_086163210.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 62630 63271 . - . ID=gene-D5F88_RS03950;Name=D5F88_RS03950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03950;old_locus_tag=D5F88_03955 NZ_QYTI01000032.1 Protein Homology CDS 62630 63271 . - 0 ID=cds-WP_001094117.1;Parent=gene-D5F88_RS03950;Dbxref=GenBank:WP_001094117.1;Name=WP_001094117.1;Ontology_term=GO:0008753,GO:0009055,GO:0010181,GO:0016491,GO:0050136,GO:0050446;gbkey=CDS;go_function=NADPH dehydrogenase (quinone) activity|0008753||IEA,electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA,NADH dehydrogenase (quinone) (non-electrogenic) activity|0050136||IEA,azobenzene reductase (NADP+) activity|0050446||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001094117.1;locus_tag=D5F88_RS03950;product=FMN-dependent NADH-azoreductase;protein_id=WP_001094117.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 63271 64185 . - . ID=gene-D5F88_RS03955;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=D5F88_RS03955;old_locus_tag=D5F88_03960 NZ_QYTI01000032.1 Protein Homology CDS 63271 64185 . - 0 ID=cds-WP_000038755.1;Parent=gene-D5F88_RS03955;Dbxref=GenBank:WP_000038755.1;Name=WP_000038755.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyQ;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000038754.1;locus_tag=D5F88_RS03955;product=glycine--tRNA ligase subunit alpha;protein_id=WP_000038755.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 64498 65040 . - . ID=gene-D5F88_RS03960;Name=D5F88_RS03960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03960;old_locus_tag=D5F88_03965 NZ_QYTI01000032.1 Protein Homology CDS 64498 65040 . - 0 ID=cds-WP_000022341.1;Parent=gene-D5F88_RS03960;Dbxref=GenBank:WP_000022341.1;Name=WP_000022341.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000022342.1;locus_tag=D5F88_RS03960;product=isoprenylcysteine carboxyl methyltransferase family protein;protein_id=WP_000022341.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 65159 66307 . - . ID=gene-D5F88_RS03965;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=D5F88_RS03965;old_locus_tag=D5F88_03970 NZ_QYTI01000032.1 Protein Homology CDS 65159 66307 . - 0 ID=cds-WP_000170470.1;Parent=gene-D5F88_RS03965;Dbxref=GenBank:WP_000170470.1;Name=WP_000170470.1;Ontology_term=GO:0006044,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000170478.1;locus_tag=D5F88_RS03965;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_000170470.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 66585 67292 . - . ID=gene-D5F88_RS03970;Name=D5F88_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03970;old_locus_tag=D5F88_03975 NZ_QYTI01000032.1 Protein Homology CDS 66585 67292 . - 0 ID=cds-WP_000687002.1;Parent=gene-D5F88_RS03970;Dbxref=GenBank:WP_000687002.1;Name=WP_000687002.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001871310.1;locus_tag=D5F88_RS03970;product=hypothetical protein;protein_id=WP_000687002.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 67484 67795 . + . ID=gene-D5F88_RS03975;Name=D5F88_RS03975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03975;old_locus_tag=D5F88_03980 NZ_QYTI01000032.1 Protein Homology CDS 67484 67795 . + 0 ID=cds-WP_000613124.1;Parent=gene-D5F88_RS03975;Dbxref=GenBank:WP_000613124.1;Name=WP_000613124.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000613123.1;locus_tag=D5F88_RS03975;product=PadR family transcriptional regulator;protein_id=WP_000613124.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 67816 68499 . + . ID=gene-D5F88_RS03980;Name=D5F88_RS03980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03980;old_locus_tag=D5F88_03985 NZ_QYTI01000032.1 Protein Homology CDS 67816 68499 . + 0 ID=cds-WP_016502475.1;Parent=gene-D5F88_RS03980;Dbxref=GenBank:WP_016502475.1;Name=WP_016502475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502475.1;locus_tag=D5F88_RS03980;product=hypothetical protein;protein_id=WP_016502475.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 68720 69478 . + . ID=gene-D5F88_RS03985;Name=D5F88_RS03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03985;old_locus_tag=D5F88_03990 NZ_QYTI01000032.1 Protein Homology CDS 68720 69478 . + 0 ID=cds-WP_124758744.1;Parent=gene-D5F88_RS03985;Dbxref=GenBank:WP_124758744.1;Name=WP_124758744.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647101.1;locus_tag=D5F88_RS03985;product=ABC transporter ATP-binding protein;protein_id=WP_124758744.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 69481 70578 . + . ID=gene-D5F88_RS03990;Name=D5F88_RS03990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS03990;old_locus_tag=D5F88_03995 NZ_QYTI01000032.1 Protein Homology CDS 69481 70578 . + 0 ID=cds-WP_001219924.1;Parent=gene-D5F88_RS03990;Dbxref=GenBank:WP_001219924.1;Name=WP_001219924.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767061.1;locus_tag=D5F88_RS03990;product=ABC transporter permease;protein_id=WP_001219924.1;transl_table=11 NZ_QYTI01000032.1 RefSeq pseudogene 70602 71211 . + . ID=gene-D5F88_RS03995;Name=D5F88_RS03995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS03995;old_locus_tag=D5F88_04000;pseudo=true NZ_QYTI01000032.1 Protein Homology CDS 70602 71211 . + 0 ID=cds-D5F88_RS03995;Parent=gene-D5F88_RS03995;Note=frameshifted;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000794358.1;locus_tag=D5F88_RS03995;product=TetR/AcrR family transcriptional regulator;pseudo=true;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 71346 71507 . - . ID=gene-D5F88_RS04000;Name=D5F88_RS04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04000;old_locus_tag=D5F88_04005 NZ_QYTI01000032.1 Protein Homology CDS 71346 71507 . - 0 ID=cds-WP_001872907.1;Parent=gene-D5F88_RS04000;Dbxref=GenBank:WP_001872907.1;Name=WP_001872907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001872907.1;locus_tag=D5F88_RS04000;product=lipoprotein;protein_id=WP_001872907.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 71793 72284 . + . ID=gene-D5F88_RS04005;Name=D5F88_RS04005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04005;old_locus_tag=D5F88_04010 NZ_QYTI01000032.1 Protein Homology CDS 71793 72284 . + 0 ID=cds-WP_000025251.1;Parent=gene-D5F88_RS04005;Dbxref=GenBank:WP_000025251.1;Name=WP_000025251.1;Ontology_term=GO:0006352,GO:0003677,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000025252.1;locus_tag=D5F88_RS04005;product=RNA polymerase sigma factor;protein_id=WP_000025251.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 72281 73228 . + . ID=gene-D5F88_RS04010;Name=D5F88_RS04010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04010;old_locus_tag=D5F88_04015 NZ_QYTI01000032.1 Protein Homology CDS 72281 73228 . + 0 ID=cds-WP_000598066.1;Parent=gene-D5F88_RS04010;Dbxref=GenBank:WP_000598066.1;Name=WP_000598066.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502471.1;locus_tag=D5F88_RS04010;product=sigma factor regulator N-terminal domain-containing protein;protein_id=WP_000598066.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 73494 74174 . - . ID=gene-D5F88_RS04015;Name=D5F88_RS04015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04015;old_locus_tag=D5F88_04020 NZ_QYTI01000032.1 Protein Homology CDS 73494 74174 . - 0 ID=cds-WP_086163224.1;Parent=gene-D5F88_RS04015;Dbxref=GenBank:WP_086163224.1;Name=WP_086163224.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000503134.1;locus_tag=D5F88_RS04015;product=GNAT family N-acetyltransferase;protein_id=WP_086163224.1;transl_table=11 NZ_QYTI01000032.1 RefSeq pseudogene 74249 74801 . - . ID=gene-D5F88_RS04020;Name=D5F88_RS04020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04020;old_locus_tag=D5F88_04025;pseudo=true NZ_QYTI01000032.1 Protein Homology CDS 74249 74801 . - 0 ID=cds-D5F88_RS04020;Parent=gene-D5F88_RS04020;Note=frameshifted%3B internal stop;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649299.1;locus_tag=D5F88_RS04020;product=GNAT family N-acetyltransferase;pseudo=true;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 74901 75461 . - . ID=gene-D5F88_RS04025;Name=D5F88_RS04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04025;old_locus_tag=D5F88_04030 NZ_QYTI01000032.1 Protein Homology CDS 74901 75461 . - 0 ID=cds-WP_001031781.1;Parent=gene-D5F88_RS04025;Dbxref=GenBank:WP_001031781.1;Name=WP_001031781.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771544.1;locus_tag=D5F88_RS04025;product=GNAT family N-acetyltransferase;protein_id=WP_001031781.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 75909 76259 . - . ID=gene-D5F88_RS04030;Name=D5F88_RS04030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04030;old_locus_tag=D5F88_04035 NZ_QYTI01000032.1 Protein Homology CDS 75909 76259 . - 0 ID=cds-WP_016480270.1;Parent=gene-D5F88_RS04030;Dbxref=GenBank:WP_016480270.1;Name=WP_016480270.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480270.1;locus_tag=D5F88_RS04030;product=hypothetical protein;protein_id=WP_016480270.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 76269 76541 . - . ID=gene-D5F88_RS04035;Name=D5F88_RS04035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04035;old_locus_tag=D5F88_04040 NZ_QYTI01000032.1 Protein Homology CDS 76269 76541 . - 0 ID=cds-WP_016480269.1;Parent=gene-D5F88_RS04035;Dbxref=GenBank:WP_016480269.1;Name=WP_016480269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000032104.1;locus_tag=D5F88_RS04035;product=hypothetical protein;protein_id=WP_016480269.1;transl_table=11 NZ_QYTI01000032.1 RefSeq pseudogene 76560 78194 . - . ID=gene-D5F88_RS11705;Name=D5F88_RS11705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11705;pseudo=true NZ_QYTI01000032.1 Protein Homology CDS 76560 78194 . - 0 ID=cds-D5F88_RS11705;Parent=gene-D5F88_RS11705;Note=internal stop;Ontology_term=GO:0006629;gbkey=CDS;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000073524.1;locus_tag=D5F88_RS11705;product=lipase family protein;pseudo=true;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 78258 78716 . - . ID=gene-D5F88_RS04050;Name=D5F88_RS04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04050;old_locus_tag=D5F88_04055 NZ_QYTI01000032.1 Protein Homology CDS 78258 78716 . - 0 ID=cds-WP_124749108.1;Parent=gene-D5F88_RS04050;Dbxref=GenBank:WP_124749108.1;Name=WP_124749108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647095.1;locus_tag=D5F88_RS04050;product=hypothetical protein;protein_id=WP_124749108.1;transl_table=11 NZ_QYTI01000032.1 RefSeq gene 79028 79111 . - . ID=gene-D5F88_RS04055;Name=D5F88_RS04055;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04055;old_locus_tag=D5F88_04060 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79028 79111 . - . ID=rna-D5F88_RS04055;Parent=gene-D5F88_RS04055;anticodon=(pos:complement(79075..79077));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04055;product=tRNA-Leu NZ_QYTI01000032.1 tRNAscan-SE exon 79028 79111 . - . ID=exon-D5F88_RS04055-1;Parent=rna-D5F88_RS04055;anticodon=(pos:complement(79075..79077));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04055;product=tRNA-Leu NZ_QYTI01000032.1 RefSeq gene 79122 79193 . - . ID=gene-D5F88_RS04060;Name=D5F88_RS04060;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04060;old_locus_tag=D5F88_04065 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79122 79193 . - . ID=rna-D5F88_RS04060;Parent=gene-D5F88_RS04060;anticodon=(pos:complement(79159..79161));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04060;product=tRNA-Gln NZ_QYTI01000032.1 tRNAscan-SE exon 79122 79193 . - . ID=exon-D5F88_RS04060-1;Parent=rna-D5F88_RS04060;anticodon=(pos:complement(79159..79161));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04060;product=tRNA-Gln NZ_QYTI01000032.1 RefSeq gene 79200 79272 . - . ID=gene-D5F88_RS04065;Name=D5F88_RS04065;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04065;old_locus_tag=D5F88_04070 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79200 79272 . - . ID=rna-D5F88_RS04065;Parent=gene-D5F88_RS04065;anticodon=(pos:complement(79237..79239));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04065;product=tRNA-His NZ_QYTI01000032.1 tRNAscan-SE exon 79200 79272 . - . ID=exon-D5F88_RS04065-1;Parent=rna-D5F88_RS04065;anticodon=(pos:complement(79237..79239));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04065;product=tRNA-His NZ_QYTI01000032.1 RefSeq gene 79287 79357 . - . ID=gene-D5F88_RS04070;Name=D5F88_RS04070;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04070;old_locus_tag=D5F88_04075 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79287 79357 . - . ID=rna-D5F88_RS04070;Parent=gene-D5F88_RS04070;anticodon=(pos:complement(79323..79325));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04070;product=tRNA-Trp NZ_QYTI01000032.1 tRNAscan-SE exon 79287 79357 . - . ID=exon-D5F88_RS04070-1;Parent=rna-D5F88_RS04070;anticodon=(pos:complement(79323..79325));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04070;product=tRNA-Trp NZ_QYTI01000032.1 RefSeq gene 79364 79444 . - . ID=gene-D5F88_RS04075;Name=D5F88_RS04075;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04075;old_locus_tag=D5F88_04080 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79364 79444 . - . ID=rna-D5F88_RS04075;Parent=gene-D5F88_RS04075;anticodon=(pos:complement(79408..79410));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04075;product=tRNA-Tyr NZ_QYTI01000032.1 tRNAscan-SE exon 79364 79444 . - . ID=exon-D5F88_RS04075-1;Parent=rna-D5F88_RS04075;anticodon=(pos:complement(79408..79410));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04075;product=tRNA-Tyr NZ_QYTI01000032.1 RefSeq gene 79456 79528 . - . ID=gene-D5F88_RS04080;Name=D5F88_RS04080;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04080;old_locus_tag=D5F88_04085 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79456 79528 . - . ID=rna-D5F88_RS04080;Parent=gene-D5F88_RS04080;anticodon=(pos:complement(79493..79495));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04080;product=tRNA-Phe NZ_QYTI01000032.1 tRNAscan-SE exon 79456 79528 . - . ID=exon-D5F88_RS04080-1;Parent=rna-D5F88_RS04080;anticodon=(pos:complement(79493..79495));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04080;product=tRNA-Phe NZ_QYTI01000032.1 RefSeq gene 79531 79604 . - . ID=gene-D5F88_RS04085;Name=D5F88_RS04085;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04085;old_locus_tag=D5F88_04090 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79531 79604 . - . ID=rna-D5F88_RS04085;Parent=gene-D5F88_RS04085;anticodon=(pos:complement(79568..79570));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04085;product=tRNA-Met NZ_QYTI01000032.1 tRNAscan-SE exon 79531 79604 . - . ID=exon-D5F88_RS04085-1;Parent=rna-D5F88_RS04085;anticodon=(pos:complement(79568..79570));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04085;product=tRNA-Met NZ_QYTI01000032.1 RefSeq gene 79615 79704 . - . ID=gene-D5F88_RS04090;Name=D5F88_RS04090;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04090;old_locus_tag=D5F88_04095 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79615 79704 . - . ID=rna-D5F88_RS04090;Parent=gene-D5F88_RS04090;anticodon=(pos:complement(79666..79668));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04090;product=tRNA-Ser NZ_QYTI01000032.1 tRNAscan-SE exon 79615 79704 . - . ID=exon-D5F88_RS04090-1;Parent=rna-D5F88_RS04090;anticodon=(pos:complement(79666..79668));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04090;product=tRNA-Ser NZ_QYTI01000032.1 RefSeq gene 79718 79789 . - . ID=gene-D5F88_RS04095;Name=D5F88_RS04095;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04095;old_locus_tag=D5F88_04100 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79718 79789 . - . ID=rna-D5F88_RS04095;Parent=gene-D5F88_RS04095;anticodon=(pos:complement(79754..79756));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04095;product=tRNA-Glu NZ_QYTI01000032.1 tRNAscan-SE exon 79718 79789 . - . ID=exon-D5F88_RS04095-1;Parent=rna-D5F88_RS04095;anticodon=(pos:complement(79754..79756));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04095;product=tRNA-Glu NZ_QYTI01000032.1 RefSeq gene 79800 79873 . - . ID=gene-D5F88_RS04100;Name=D5F88_RS04100;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04100;old_locus_tag=D5F88_04105 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79800 79873 . - . ID=rna-D5F88_RS04100;Parent=gene-D5F88_RS04100;anticodon=(pos:complement(79837..79839));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04100;product=tRNA-Ile NZ_QYTI01000032.1 tRNAscan-SE exon 79800 79873 . - . ID=exon-D5F88_RS04100-1;Parent=rna-D5F88_RS04100;anticodon=(pos:complement(79837..79839));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04100;product=tRNA-Ile NZ_QYTI01000032.1 RefSeq gene 79902 79974 . - . ID=gene-D5F88_RS04105;Name=D5F88_RS04105;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04105;old_locus_tag=D5F88_04110 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79902 79974 . - . ID=rna-D5F88_RS04105;Parent=gene-D5F88_RS04105;anticodon=(pos:complement(79939..79941));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04105;product=tRNA-Thr NZ_QYTI01000032.1 tRNAscan-SE exon 79902 79974 . - . ID=exon-D5F88_RS04105-1;Parent=rna-D5F88_RS04105;anticodon=(pos:complement(79939..79941));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04105;product=tRNA-Thr NZ_QYTI01000032.1 RefSeq gene 79985 80066 . - . ID=gene-D5F88_RS04110;Name=D5F88_RS04110;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04110;old_locus_tag=D5F88_04115 NZ_QYTI01000032.1 tRNAscan-SE tRNA 79985 80066 . - . ID=rna-D5F88_RS04110;Parent=gene-D5F88_RS04110;anticodon=(pos:complement(80030..80032));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04110;product=tRNA-Leu NZ_QYTI01000032.1 tRNAscan-SE exon 79985 80066 . - . ID=exon-D5F88_RS04110-1;Parent=rna-D5F88_RS04110;anticodon=(pos:complement(80030..80032));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04110;product=tRNA-Leu NZ_QYTI01000032.1 RefSeq gene 80076 80148 . - . ID=gene-D5F88_RS04115;Name=D5F88_RS04115;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04115;old_locus_tag=D5F88_04120 NZ_QYTI01000032.1 tRNAscan-SE tRNA 80076 80148 . - . ID=rna-D5F88_RS04115;Parent=gene-D5F88_RS04115;anticodon=(pos:complement(80113..80115));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04115;product=tRNA-Lys NZ_QYTI01000032.1 tRNAscan-SE exon 80076 80148 . - . ID=exon-D5F88_RS04115-1;Parent=rna-D5F88_RS04115;anticodon=(pos:complement(80113..80115));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04115;product=tRNA-Lys NZ_QYTI01000032.1 RefSeq gene 80151 80223 . - . ID=gene-D5F88_RS04120;Name=D5F88_RS04120;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04120;old_locus_tag=D5F88_04125 NZ_QYTI01000032.1 tRNAscan-SE tRNA 80151 80223 . - . ID=rna-D5F88_RS04120;Parent=gene-D5F88_RS04120;anticodon=(pos:complement(80188..80190));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04120;product=tRNA-Asp NZ_QYTI01000032.1 tRNAscan-SE exon 80151 80223 . - . ID=exon-D5F88_RS04120-1;Parent=rna-D5F88_RS04120;anticodon=(pos:complement(80188..80190));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04120;product=tRNA-Asp NZ_QYTI01000032.1 RefSeq gene 80226 80298 . - . ID=gene-D5F88_RS04125;Name=D5F88_RS04125;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04125;old_locus_tag=D5F88_04130 NZ_QYTI01000032.1 tRNAscan-SE tRNA 80226 80298 . - . ID=rna-D5F88_RS04125;Parent=gene-D5F88_RS04125;anticodon=(pos:complement(80263..80265));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04125;product=tRNA-Val NZ_QYTI01000032.1 tRNAscan-SE exon 80226 80298 . - . ID=exon-D5F88_RS04125-1;Parent=rna-D5F88_RS04125;anticodon=(pos:complement(80263..80265));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04125;product=tRNA-Val NZ_QYTI01000032.1 RefSeq gene 80302 80417 . - . ID=gene-D5F88_RS04130;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=D5F88_RS04130;old_locus_tag=D5F88_04135 NZ_QYTI01000032.1 cmsearch rRNA 80302 80417 . - . ID=rna-D5F88_RS04130;Parent=gene-D5F88_RS04130;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS04130;product=5S ribosomal RNA NZ_QYTI01000032.1 cmsearch exon 80302 80417 . - . ID=exon-D5F88_RS04130-1;Parent=rna-D5F88_RS04130;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS04130;product=5S ribosomal RNA ##sequence-region NZ_QYTI01000033.1 1 37856 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000033.1 RefSeq region 1 37856 . + . ID=NZ_QYTI01000033.1:1..37856;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000033.1 RefSeq gene 1 238 . + . ID=gene-D5F88_RS04135;Name=D5F88_RS04135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04135;old_locus_tag=D5F88_04140;partial=true;start_range=.,1 NZ_QYTI01000033.1 Protein Homology CDS 1 238 . + 1 ID=cds-WP_142358775.1;Parent=gene-D5F88_RS04135;Dbxref=GenBank:WP_142358775.1;Name=WP_142358775.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS04135;partial=true;product=integrase core domain-containing protein;protein_id=WP_142358775.1;start_range=.,1;transl_table=11 NZ_QYTI01000033.1 RefSeq pseudogene 273 635 . - . ID=gene-D5F88_RS04140;Name=D5F88_RS04140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04140;old_locus_tag=D5F88_04145;partial=true;pseudo=true;start_range=.,273 NZ_QYTI01000033.1 Protein Homology CDS 273 635 . - 0 ID=cds-D5F88_RS04140;Parent=gene-D5F88_RS04140;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000160532.1;locus_tag=D5F88_RS04140;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,273;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 895 1320 . + . ID=gene-D5F88_RS04145;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=D5F88_RS04145;old_locus_tag=D5F88_04150 NZ_QYTI01000033.1 Protein Homology CDS 895 1320 . + 0 ID=cds-WP_001085802.1;Parent=gene-D5F88_RS04145;Dbxref=GenBank:WP_001085802.1;Name=WP_001085802.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004226069.1;locus_tag=D5F88_RS04145;product=50S ribosomal protein L11;protein_id=WP_001085802.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 1424 2113 . + . ID=gene-D5F88_RS04150;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=D5F88_RS04150;old_locus_tag=D5F88_04155 NZ_QYTI01000033.1 Protein Homology CDS 1424 2113 . + 0 ID=cds-WP_001085664.1;Parent=gene-D5F88_RS04150;Dbxref=GenBank:WP_001085664.1;Name=WP_001085664.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0015934;gbkey=CDS;gene=rplA;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006145049.1;locus_tag=D5F88_RS04150;product=50S ribosomal protein L1;protein_id=WP_001085664.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 2503 4119 . + . ID=gene-D5F88_RS04155;Name=nikA;gbkey=Gene;gene=nikA;gene_biotype=protein_coding;locus_tag=D5F88_RS04155;old_locus_tag=D5F88_04160 NZ_QYTI01000033.1 Protein Homology CDS 2503 4119 . + 0 ID=cds-WP_086163430.1;Parent=gene-D5F88_RS04155;Dbxref=GenBank:WP_086163430.1;Name=WP_086163430.1;Ontology_term=GO:0015675,GO:0015413,GO:0016151,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=nikA;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type nickel transporter activity|0015413||IEA,nickel cation binding|0016151||IEA;go_process=nickel cation transport|0015675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001253836.1;locus_tag=D5F88_RS04155;product=nickel ABC transporter substrate-binding protein;protein_id=WP_086163430.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 4106 5050 . + . ID=gene-D5F88_RS04160;Name=D5F88_RS04160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04160;old_locus_tag=D5F88_04165 NZ_QYTI01000033.1 Protein Homology CDS 4106 5050 . + 0 ID=cds-WP_000281515.1;Parent=gene-D5F88_RS04160;Dbxref=GenBank:WP_000281515.1;Name=WP_000281515.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000281517.1;locus_tag=D5F88_RS04160;product=ABC transporter permease;protein_id=WP_000281515.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 5050 5856 . + . ID=gene-D5F88_RS04165;Name=D5F88_RS04165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04165;old_locus_tag=D5F88_04170 NZ_QYTI01000033.1 Protein Homology CDS 5050 5856 . + 0 ID=cds-WP_000044261.1;Parent=gene-D5F88_RS04165;Dbxref=GenBank:WP_000044261.1;Name=WP_000044261.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647895.1;locus_tag=D5F88_RS04165;product=ABC transporter permease;protein_id=WP_000044261.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 5844 6632 . + . ID=gene-D5F88_RS04170;Name=D5F88_RS04170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04170;old_locus_tag=D5F88_04175 NZ_QYTI01000033.1 Protein Homology CDS 5844 6632 . + 0 ID=cds-WP_016481063.1;Parent=gene-D5F88_RS04170;Dbxref=GenBank:WP_016481063.1;Name=WP_016481063.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000436158.1;locus_tag=D5F88_RS04170;product=ATP-binding cassette domain-containing protein;protein_id=WP_016481063.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 6619 7299 . + . ID=gene-D5F88_RS04175;Name=D5F88_RS04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04175;old_locus_tag=D5F88_04180 NZ_QYTI01000033.1 Protein Homology CDS 6619 7299 . + 0 ID=cds-WP_016481062.1;Parent=gene-D5F88_RS04175;Dbxref=GenBank:WP_016481062.1;Name=WP_016481062.1;Ontology_term=GO:0005524,GO:0016887,GO:0022857,GO:0042626,GO:0140359,GO:0043190;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,transmembrane transporter activity|0022857||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000959471.1;locus_tag=D5F88_RS04175;product=ABC transporter ATP-binding protein;protein_id=WP_016481062.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 7420 8148 . + . ID=gene-D5F88_RS04180;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=D5F88_RS04180;old_locus_tag=D5F88_04185 NZ_QYTI01000033.1 Protein Homology CDS 7420 8148 . + 0 ID=cds-WP_000433491.1;Parent=gene-D5F88_RS04180;Dbxref=GenBank:WP_000433491.1;Name=WP_000433491.1;Ontology_term=GO:0006221,GO:0015949,GO:0033862,GO:0005737;gbkey=CDS;gene=pyrH;go_component=cytoplasm|0005737||IEA;go_function=UMP kinase activity|0033862||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002985765.1;locus_tag=D5F88_RS04180;product=UMP kinase;protein_id=WP_000433491.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 8164 8721 . + . ID=gene-D5F88_RS04185;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=D5F88_RS04185;old_locus_tag=D5F88_04190 NZ_QYTI01000033.1 Protein Homology CDS 8164 8721 . + 0 ID=cds-WP_000159519.1;Parent=gene-D5F88_RS04185;Dbxref=GenBank:WP_000159519.1;Name=WP_000159519.1;Ontology_term=GO:0006412,GO:0008135;gbkey=CDS;gene=frr;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006148672.1;locus_tag=D5F88_RS04185;product=ribosome recycling factor;protein_id=WP_000159519.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 8839 9693 . + . ID=gene-D5F88_RS04190;Name=cvfB;gbkey=Gene;gene=cvfB;gene_biotype=protein_coding;locus_tag=D5F88_RS04190;old_locus_tag=D5F88_04195 NZ_QYTI01000033.1 Protein Homology CDS 8839 9693 . + 0 ID=cds-WP_016481060.1;Parent=gene-D5F88_RS04190;Dbxref=GenBank:WP_016481060.1;Name=WP_016481060.1;gbkey=CDS;gene=cvfB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001095444.1;locus_tag=D5F88_RS04190;product=RNA-binding virulence regulatory protein CvfB;protein_id=WP_016481060.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 9831 10340 . + . ID=gene-D5F88_RS04195;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=D5F88_RS04195;old_locus_tag=D5F88_04200 NZ_QYTI01000033.1 Protein Homology CDS 9831 10340 . + 0 ID=cds-WP_016481059.1;Parent=gene-D5F88_RS04195;Dbxref=GenBank:WP_016481059.1;Name=WP_016481059.1;Ontology_term=GO:0006979,GO:0030091,GO:0008113,GO:0033744;gbkey=CDS;gene=msrA;go_function=peptide-methionine (S)-S-oxide reductase activity|0008113||IEA,L-methionine:thioredoxin-disulfide S-oxidoreductase activity|0033744||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481059.1;locus_tag=D5F88_RS04195;product=peptide-methionine (S)-S-oxide reductase MsrA;protein_id=WP_016481059.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 10337 10552 . + . ID=gene-D5F88_RS04200;Name=D5F88_RS04200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04200;old_locus_tag=D5F88_04205 NZ_QYTI01000033.1 Protein Homology CDS 10337 10552 . + 0 ID=cds-WP_001232073.1;Parent=gene-D5F88_RS04200;Dbxref=GenBank:WP_001232073.1;Name=WP_001232073.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001232073.1;locus_tag=D5F88_RS04200;product=YozE family protein;protein_id=WP_001232073.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 10709 12481 . + . ID=gene-D5F88_RS04205;Name=D5F88_RS04205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04205;old_locus_tag=D5F88_04210 NZ_QYTI01000033.1 Protein Homology CDS 10709 12481 . + 0 ID=cds-WP_001270883.1;Parent=gene-D5F88_RS04205;Dbxref=GenBank:WP_001270883.1;Name=WP_001270883.1;Ontology_term=GO:0006631,GO:0050151,GO:0071949;gbkey=CDS;go_function=oleate hydratase activity|0050151||IEA,FAD binding|0071949||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646510.1;locus_tag=D5F88_RS04205;product=oleate hydratase;protein_id=WP_001270883.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 12605 13591 . + . ID=gene-D5F88_RS04210;Name=D5F88_RS04210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04210;old_locus_tag=D5F88_04215 NZ_QYTI01000033.1 Protein Homology CDS 12605 13591 . + 0 ID=cds-WP_001158917.1;Parent=gene-D5F88_RS04210;Dbxref=GenBank:WP_001158917.1;Name=WP_001158917.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001158936.1;locus_tag=D5F88_RS04210;product=PhoH family protein;protein_id=WP_001158917.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 13683 14486 . - . ID=gene-D5F88_RS04215;Name=D5F88_RS04215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04215;old_locus_tag=D5F88_04220 NZ_QYTI01000033.1 Protein Homology CDS 13683 14486 . - 0 ID=cds-WP_016503074.1;Parent=gene-D5F88_RS04215;Dbxref=GenBank:WP_016503074.1;Name=WP_016503074.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000349554.1;locus_tag=D5F88_RS04215;product=DUF4037 domain-containing protein;protein_id=WP_016503074.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 14678 15154 . + . ID=gene-D5F88_RS04220;Name=D5F88_RS04220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04220;old_locus_tag=D5F88_04225 NZ_QYTI01000033.1 Protein Homology CDS 14678 15154 . + 0 ID=cds-WP_000806806.1;Parent=gene-D5F88_RS04220;Dbxref=GenBank:WP_000806806.1;Name=WP_000806806.1;Ontology_term=GO:0009132,GO:0016817,GO:0046872;gbkey=CDS;go_function=hydrolase activity%2C acting on acid anhydrides|0016817||IEA,metal ion binding|0046872||IEA;go_process=nucleoside diphosphate metabolic process|0009132||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649862.1;locus_tag=D5F88_RS04220;product=NUDIX hydrolase;protein_id=WP_000806806.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 15476 16282 . + . ID=gene-D5F88_RS04235;Name=D5F88_RS04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04235;old_locus_tag=D5F88_04240 NZ_QYTI01000033.1 Protein Homology CDS 15476 16282 . + 0 ID=cds-WP_124773253.1;Parent=gene-D5F88_RS04235;Dbxref=GenBank:WP_124773253.1;Name=WP_124773253.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000705139.1;locus_tag=D5F88_RS04235;product=class I SAM-dependent methyltransferase;protein_id=WP_124773253.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 16677 17174 . + . ID=gene-D5F88_RS04240;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=D5F88_RS04240;old_locus_tag=D5F88_04245 NZ_QYTI01000033.1 Protein Homology CDS 16677 17174 . + 0 ID=cds-WP_001867191.1;Parent=gene-D5F88_RS04240;Dbxref=GenBank:WP_001867191.1;Name=WP_001867191.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=RNA nuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018380869.1;locus_tag=D5F88_RS04240;product=rRNA maturation RNase YbeY;protein_id=WP_001867191.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 17155 17553 . + . ID=gene-D5F88_RS04245;Name=dagK;gbkey=Gene;gene=dagK;gene_biotype=protein_coding;locus_tag=D5F88_RS04245;old_locus_tag=D5F88_04250 NZ_QYTI01000033.1 Protein Homology CDS 17155 17553 . + 0 ID=cds-WP_000365220.1;Parent=gene-D5F88_RS04245;Dbxref=GenBank:WP_000365220.1;Name=WP_000365220.1;gbkey=CDS;gene=dagK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000365222.1;locus_tag=D5F88_RS04245;product=diacylglycerol kinase;protein_id=WP_000365220.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 17595 18494 . + . ID=gene-D5F88_RS04250;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=D5F88_RS04250;old_locus_tag=D5F88_04255 NZ_QYTI01000033.1 Protein Homology CDS 17595 18494 . + 0 ID=cds-WP_086163429.1;Parent=gene-D5F88_RS04250;Dbxref=GenBank:WP_086163429.1;Name=WP_086163429.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012658024.1;locus_tag=D5F88_RS04250;product=GTPase Era;protein_id=WP_086163429.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 18731 19120 . + . ID=gene-D5F88_RS04255;Name=D5F88_RS04255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04255;old_locus_tag=D5F88_04260 NZ_QYTI01000033.1 Protein Homology CDS 18731 19120 . + 0 ID=cds-WP_000551530.1;Parent=gene-D5F88_RS04255;Dbxref=GenBank:WP_000551530.1;Name=WP_000551530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771275.1;locus_tag=D5F88_RS04255;product=hypothetical protein;protein_id=WP_000551530.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 19580 19831 . + . ID=gene-D5F88_RS04260;Name=D5F88_RS04260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04260;old_locus_tag=D5F88_04265 NZ_QYTI01000033.1 Protein Homology CDS 19580 19831 . + 0 ID=cds-WP_180383435.1;Parent=gene-D5F88_RS04260;Dbxref=GenBank:WP_180383435.1;Name=WP_180383435.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000973012.1;locus_tag=D5F88_RS04260;product=hypothetical protein;protein_id=WP_180383435.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 19850 20104 . + . ID=gene-D5F88_RS04265;Name=D5F88_RS04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04265;old_locus_tag=D5F88_04270 NZ_QYTI01000033.1 Protein Homology CDS 19850 20104 . + 0 ID=cds-WP_001867186.1;Parent=gene-D5F88_RS04265;Dbxref=GenBank:WP_001867186.1;Name=WP_001867186.1;Ontology_term=GO:0070007,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=glutamic-type endopeptidase activity|0070007||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001923489.1;locus_tag=D5F88_RS04265;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_001867186.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 20432 20626 . - . ID=gene-D5F88_RS04275;Name=D5F88_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04275;old_locus_tag=D5F88_04280 NZ_QYTI01000033.1 Protein Homology CDS 20432 20626 . - 0 ID=cds-WP_086163427.1;Parent=gene-D5F88_RS04275;Dbxref=GenBank:WP_086163427.1;Name=WP_086163427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000606011.1;locus_tag=D5F88_RS04275;product=hypothetical protein;protein_id=WP_086163427.1;transl_table=11 NZ_QYTI01000033.1 RefSeq pseudogene 20625 20818 . + . ID=gene-D5F88_RS11810;Name=D5F88_RS11810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11810;old_locus_tag=D5F88_04285;pseudo=true NZ_QYTI01000033.1 Protein Homology CDS 20625 20818 . + 0 ID=cds-D5F88_RS11810;Parent=gene-D5F88_RS11810;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001878969.1;locus_tag=D5F88_RS11810;product=hypothetical protein;pseudo=true;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 20868 21044 . - . ID=gene-D5F88_RS04285;Name=D5F88_RS04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04285;old_locus_tag=D5F88_04290 NZ_QYTI01000033.1 Protein Homology CDS 20868 21044 . - 0 ID=cds-WP_000039432.1;Parent=gene-D5F88_RS04285;Dbxref=GenBank:WP_000039432.1;Name=WP_000039432.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000039432.1;locus_tag=D5F88_RS04285;product=hypothetical protein;protein_id=WP_000039432.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 21080 22672 . - . ID=gene-D5F88_RS04290;Name=D5F88_RS04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04290;old_locus_tag=D5F88_04295 NZ_QYTI01000033.1 Protein Homology CDS 21080 22672 . - 0 ID=cds-WP_086163426.1;Parent=gene-D5F88_RS04290;Dbxref=GenBank:WP_086163426.1;Name=WP_086163426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646210.1;locus_tag=D5F88_RS04290;product=transglutaminase domain-containing protein;protein_id=WP_086163426.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 22734 22802 . - . ID=gene-D5F88_RS11610;Name=shp2;gbkey=Gene;gene=shp2;gene_biotype=protein_coding;locus_tag=D5F88_RS11610 NZ_QYTI01000033.1 Protein Homology CDS 22734 22802 . - 0 ID=cds-WP_132833258.1;Parent=gene-D5F88_RS11610;Dbxref=GenBank:WP_132833258.1;Name=WP_132833258.1;gbkey=CDS;gene=shp2;inference=COORDINATES: similar to AA sequence:RefSeq:WP_128650799.1;locus_tag=D5F88_RS11610;product=peptide pheromone SHP2;protein_id=WP_132833258.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 22890 23738 . + . ID=gene-D5F88_RS04295;Name=rgg2;gbkey=Gene;gene=rgg2;gene_biotype=protein_coding;locus_tag=D5F88_RS04295;old_locus_tag=D5F88_04300 NZ_QYTI01000033.1 Protein Homology CDS 22890 23738 . + 0 ID=cds-WP_000410031.1;Parent=gene-D5F88_RS04295;Dbxref=GenBank:WP_000410031.1;Name=WP_000410031.1;gbkey=CDS;gene=rgg2;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648250.1;locus_tag=D5F88_RS04295;product=quorum-sensing system transcriptional regulator Rgg2;protein_id=WP_000410031.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 23887 24708 . + . ID=gene-D5F88_RS04300;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=D5F88_RS04300;old_locus_tag=D5F88_04305 NZ_QYTI01000033.1 Protein Homology CDS 23887 24708 . + 0 ID=cds-WP_016503065.1;Parent=gene-D5F88_RS04300;Dbxref=GenBank:WP_016503065.1;Name=WP_016503065.1;Ontology_term=GO:0006281,GO:0008534,GO:0046872,GO:0005737;gbkey=CDS;gene=mutM;go_component=cytoplasm|0005737||IEA;go_function=oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001114601.1;locus_tag=D5F88_RS04300;product=DNA-formamidopyrimidine glycosylase;protein_id=WP_016503065.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 24699 25292 . + . ID=gene-D5F88_RS04305;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=D5F88_RS04305;old_locus_tag=D5F88_04310 NZ_QYTI01000033.1 Protein Homology CDS 24699 25292 . + 0 ID=cds-WP_000930247.1;Parent=gene-D5F88_RS04305;Dbxref=GenBank:WP_000930247.1;Name=WP_000930247.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005524,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA,ATP binding|0005524||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017770961.1;locus_tag=D5F88_RS04305;product=dephospho-CoA kinase;protein_id=WP_000930247.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 25416 26117 . + . ID=gene-D5F88_RS04310;Name=D5F88_RS04310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04310;old_locus_tag=D5F88_04315 NZ_QYTI01000033.1 Protein Homology CDS 25416 26117 . + 0 ID=cds-WP_000424347.1;Parent=gene-D5F88_RS04310;Dbxref=GenBank:WP_000424347.1;Name=WP_000424347.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000424353.1;locus_tag=D5F88_RS04310;product=ABC transporter ATP-binding protein;protein_id=WP_000424347.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 26107 27753 . + . ID=gene-D5F88_RS04315;Name=D5F88_RS04315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04315;old_locus_tag=D5F88_04320 NZ_QYTI01000033.1 Protein Homology CDS 26107 27753 . + 0 ID=cds-WP_016503062.1;Parent=gene-D5F88_RS04315;Dbxref=GenBank:WP_016503062.1;Name=WP_016503062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000200920.1;locus_tag=D5F88_RS04315;product=hypothetical protein;protein_id=WP_016503062.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 27949 29118 . + . ID=gene-D5F88_RS04320;Name=D5F88_RS04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04320;old_locus_tag=D5F88_04325 NZ_QYTI01000033.1 Protein Homology CDS 27949 29118 . + 0 ID=cds-WP_015058682.1;Parent=gene-D5F88_RS04320;Dbxref=GenBank:WP_015058682.1;Name=WP_015058682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000312381.1;locus_tag=D5F88_RS04320;product=multidrug efflux MFS transporter;protein_id=WP_015058682.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 29115 29261 . + . ID=gene-D5F88_RS04325;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=D5F88_RS04325;old_locus_tag=D5F88_04330 NZ_QYTI01000033.1 Protein Homology CDS 29115 29261 . + 0 ID=cds-WP_001873241.1;Parent=gene-D5F88_RS04325;Dbxref=GenBank:WP_001873241.1;Name=WP_001873241.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmG;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019803498.1;locus_tag=D5F88_RS04325;product=50S ribosomal protein L33;protein_id=WP_001873241.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 29308 29544 . + . ID=gene-D5F88_RS04330;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=D5F88_RS04330;old_locus_tag=D5F88_04335 NZ_QYTI01000033.1 Protein Homology CDS 29308 29544 . + 0 ID=cds-WP_000282513.1;Parent=gene-D5F88_RS04330;Dbxref=GenBank:WP_000282513.1;Name=WP_000282513.1;Ontology_term=GO:0015739,GO:0015136,GO:0016020;gbkey=CDS;gene=secG;go_component=membrane|0016020||IEA;go_function=sialic acid transmembrane transporter activity|0015136||IEA;go_process=sialic acid transport|0015739||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000282513.1;locus_tag=D5F88_RS04330;product=preprotein translocase subunit SecG;protein_id=WP_000282513.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 29657 32062 . + . ID=gene-D5F88_RS04335;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;locus_tag=D5F88_RS04335;old_locus_tag=D5F88_04340 NZ_QYTI01000033.1 Protein Homology CDS 29657 32062 . + 0 ID=cds-WP_016503061.1;Parent=gene-D5F88_RS04335;Dbxref=GenBank:WP_016503061.1;Name=WP_016503061.1;Ontology_term=GO:0003723,GO:0004518;gbkey=CDS;gene=rnr;go_function=RNA binding|0003723||IEA,nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000659933.1;locus_tag=D5F88_RS04335;product=ribonuclease R;protein_id=WP_016503061.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 32065 32532 . + . ID=gene-D5F88_RS04340;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=D5F88_RS04340;old_locus_tag=D5F88_04345 NZ_QYTI01000033.1 Protein Homology CDS 32065 32532 . + 0 ID=cds-WP_000238456.1;Parent=gene-D5F88_RS04340;Dbxref=GenBank:WP_000238456.1;Name=WP_000238456.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002894882.1;locus_tag=D5F88_RS04340;product=SsrA-binding protein SmpB;protein_id=WP_000238456.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 32616 34004 . - . ID=gene-D5F88_RS04345;Name=D5F88_RS04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04345;old_locus_tag=D5F88_04350 NZ_QYTI01000033.1 Protein Homology CDS 32616 34004 . - 0 ID=cds-WP_000042126.1;Parent=gene-D5F88_RS04345;Dbxref=GenBank:WP_000042126.1;Name=WP_000042126.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000042127.1;locus_tag=D5F88_RS04345;product=amino acid permease;protein_id=WP_000042126.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 34133 35059 . - . ID=gene-D5F88_RS04350;Name=D5F88_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04350;old_locus_tag=D5F88_04355 NZ_QYTI01000033.1 Protein Homology CDS 34133 35059 . - 0 ID=cds-WP_001196763.1;Parent=gene-D5F88_RS04350;Dbxref=GenBank:WP_001196763.1;Name=WP_001196763.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001196765.1;locus_tag=D5F88_RS04350;product=glycosyltransferase family 2 protein;protein_id=WP_001196763.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 35188 35580 . - . ID=gene-D5F88_RS04355;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;gene_synonym=lguL;locus_tag=D5F88_RS04355;old_locus_tag=D5F88_04360 NZ_QYTI01000033.1 Protein Homology CDS 35188 35580 . - 0 ID=cds-WP_001116199.1;Parent=gene-D5F88_RS04355;Dbxref=GenBank:WP_001116199.1;Name=WP_001116199.1;gbkey=CDS;gene=gloA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771619.1;locus_tag=D5F88_RS04355;product=lactoylglutathione lyase;protein_id=WP_001116199.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 35668 36342 . - . ID=gene-D5F88_RS04360;Name=D5F88_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04360;old_locus_tag=D5F88_04365 NZ_QYTI01000033.1 Protein Homology CDS 35668 36342 . - 0 ID=cds-WP_000159251.1;Parent=gene-D5F88_RS04360;Dbxref=GenBank:WP_000159251.1;Name=WP_000159251.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000159250.1;locus_tag=D5F88_RS04360;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_000159251.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 36609 37451 . + . ID=gene-D5F88_RS04365;Name=D5F88_RS04365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04365;old_locus_tag=D5F88_04370 NZ_QYTI01000033.1 Protein Homology CDS 36609 37451 . + 0 ID=cds-WP_086163424.1;Parent=gene-D5F88_RS04365;Dbxref=GenBank:WP_086163424.1;Name=WP_086163424.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058680.1;locus_tag=D5F88_RS04365;product=aldo/keto reductase;protein_id=WP_086163424.1;transl_table=11 NZ_QYTI01000033.1 RefSeq gene 37609 37856 . - . ID=gene-D5F88_RS04370;Name=D5F88_RS04370;end_range=37856,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04370;old_locus_tag=D5F88_04375;partial=true NZ_QYTI01000033.1 Protein Homology CDS 37609 37856 . - 2 ID=cds-WP_142997434.1;Parent=gene-D5F88_RS04370;Dbxref=GenBank:WP_142997434.1;Name=WP_142997434.1;Ontology_term=GO:0015074;end_range=37856,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS04370;partial=true;product=integrase core domain-containing protein;protein_id=WP_142997434.1;transl_table=11 ##sequence-region NZ_QYTI01000034.1 1 46899 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000034.1 RefSeq region 1 46899 . + . ID=NZ_QYTI01000034.1:1..46899;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000034.1 RefSeq gene 1 374 . - . ID=gene-D5F88_RS04375;Name=D5F88_RS04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04375;old_locus_tag=D5F88_04380;partial=true;start_range=.,1 NZ_QYTI01000034.1 Protein Homology CDS 1 374 . - 0 ID=cds-WP_124773255.1;Parent=gene-D5F88_RS04375;Dbxref=GenBank:WP_124773255.1;Name=WP_124773255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649570.1;locus_tag=D5F88_RS04375;partial=true;product=PTS sugar transporter subunit IIA;protein_id=WP_124773255.1;start_range=.,1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 583 1359 . + . ID=gene-D5F88_RS04380;Name=D5F88_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04380;old_locus_tag=D5F88_04385 NZ_QYTI01000034.1 Protein Homology CDS 583 1359 . + 0 ID=cds-WP_000919190.1;Parent=gene-D5F88_RS04380;Dbxref=GenBank:WP_000919190.1;Name=WP_000919190.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000919193.1;locus_tag=D5F88_RS04380;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000919190.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 1641 4223 . - . ID=gene-D5F88_RS04385;Name=D5F88_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04385;old_locus_tag=D5F88_04390 NZ_QYTI01000034.1 Protein Homology CDS 1641 4223 . - 0 ID=cds-WP_086163495.1;Parent=gene-D5F88_RS04385;Dbxref=GenBank:WP_086163495.1;Name=WP_086163495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001080375.1;locus_tag=D5F88_RS04385;product=pneumococcal-type histidine triad protein;protein_id=WP_086163495.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 4250 5173 . - . ID=gene-D5F88_RS04390;Name=D5F88_RS04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04390;old_locus_tag=D5F88_04395 NZ_QYTI01000034.1 Protein Homology CDS 4250 5173 . - 0 ID=cds-WP_000822455.1;Parent=gene-D5F88_RS04390;Dbxref=GenBank:WP_000822455.1;Name=WP_000822455.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000822457.1;locus_tag=D5F88_RS04390;product=metal ABC transporter solute-binding protein%2C Zn/Mn family;protein_id=WP_000822455.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 5428 5871 . - . ID=gene-D5F88_RS04395;Name=dtd;gbkey=Gene;gene=dtd;gene_biotype=protein_coding;locus_tag=D5F88_RS04395;old_locus_tag=D5F88_04400 NZ_QYTI01000034.1 Protein Homology CDS 5428 5871 . - 0 ID=cds-WP_000691436.1;Parent=gene-D5F88_RS04395;Dbxref=GenBank:WP_000691436.1;Name=WP_000691436.1;Ontology_term=GO:0008152,GO:0004045;gbkey=CDS;gene=dtd;go_function=peptidyl-tRNA hydrolase activity|0004045||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481271.1;locus_tag=D5F88_RS04395;product=D-aminoacyl-tRNA deacylase;protein_id=WP_000691436.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 5881 8097 . - . ID=gene-D5F88_RS04400;Name=D5F88_RS04400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04400;old_locus_tag=D5F88_04405 NZ_QYTI01000034.1 Protein Homology CDS 5881 8097 . - 0 ID=cds-WP_000237872.1;Parent=gene-D5F88_RS04400;Dbxref=GenBank:WP_000237872.1;Name=WP_000237872.1;Ontology_term=GO:0015970,GO:0008728,GO:0008893;gbkey=CDS;go_function=GTP diphosphokinase activity|0008728||IEA,guanosine-3'%2C5'-bis(diphosphate) 3'-diphosphatase activity|0008893||IEA;go_process=guanosine tetraphosphate biosynthetic process|0015970||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019316080.1;locus_tag=D5F88_RS04400;product=RelA/SpoT family protein;protein_id=WP_000237872.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 8357 10759 . + . ID=gene-D5F88_RS04405;Name=D5F88_RS04405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04405;old_locus_tag=D5F88_04410 NZ_QYTI01000034.1 Protein Homology CDS 8357 10759 . + 0 ID=cds-WP_086163496.1;Parent=gene-D5F88_RS04405;Dbxref=GenBank:WP_086163496.1;Name=WP_086163496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000033916.1;locus_tag=D5F88_RS04405;product=bifunctional 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;protein_id=WP_086163496.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 10916 11371 . + . ID=gene-D5F88_RS04410;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;locus_tag=D5F88_RS04410;old_locus_tag=D5F88_04415 NZ_QYTI01000034.1 Protein Homology CDS 10916 11371 . + 0 ID=cds-WP_001125401.1;Parent=gene-D5F88_RS04410;Dbxref=GenBank:WP_001125401.1;Name=WP_001125401.1;Ontology_term=GO:0010181;gbkey=CDS;gene=nrdI;go_function=FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001125399.1;locus_tag=D5F88_RS04410;product=class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI;protein_id=WP_001125401.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 11382 12419 . + . ID=gene-D5F88_RS04415;Name=D5F88_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04415;old_locus_tag=D5F88_04420 NZ_QYTI01000034.1 Protein Homology CDS 11382 12419 . + 0 ID=cds-WP_086163497.1;Parent=gene-D5F88_RS04415;Dbxref=GenBank:WP_086163497.1;Name=WP_086163497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000450421.1;locus_tag=D5F88_RS04415;product=M42 family metallopeptidase;protein_id=WP_086163497.1;transl_table=11 NZ_QYTI01000034.1 RefSeq pseudogene 12419 12916 . + . ID=gene-D5F88_RS04420;Name=D5F88_RS04420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04420;old_locus_tag=D5F88_04425;pseudo=true NZ_QYTI01000034.1 Protein Homology CDS 12419 12916 . + 0 ID=cds-D5F88_RS04420;Parent=gene-D5F88_RS04420;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000226640.1;locus_tag=D5F88_RS04420;product=kinase;pseudo=true;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 13138 14175 . - . ID=gene-D5F88_RS04425;Name=D5F88_RS04425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04425;old_locus_tag=D5F88_04430 NZ_QYTI01000034.1 Protein Homology CDS 13138 14175 . - 0 ID=cds-WP_086163498.1;Parent=gene-D5F88_RS04425;Dbxref=GenBank:WP_086163498.1;Name=WP_086163498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000660650.1;locus_tag=D5F88_RS04425;product=extracellular solute-binding protein;protein_id=WP_086163498.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 14187 14960 . - . ID=gene-D5F88_RS04430;Name=D5F88_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04430;old_locus_tag=D5F88_04435 NZ_QYTI01000034.1 Protein Homology CDS 14187 14960 . - 0 ID=cds-WP_086163499.1;Parent=gene-D5F88_RS04430;Dbxref=GenBank:WP_086163499.1;Name=WP_086163499.1;Ontology_term=GO:0000160,GO:0006355,GO:0007165,GO:0000156,GO:0003677,GO:0003700;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000286075.1;locus_tag=D5F88_RS04430;product=response regulator transcription factor;protein_id=WP_086163499.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 14964 16613 . - . ID=gene-D5F88_RS04435;Name=D5F88_RS04435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04435;old_locus_tag=D5F88_04440 NZ_QYTI01000034.1 Protein Homology CDS 14964 16613 . - 0 ID=cds-WP_086163500.1;Parent=gene-D5F88_RS04435;Dbxref=GenBank:WP_086163500.1;Name=WP_086163500.1;Ontology_term=GO:0007165,GO:0000155,GO:0000156,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,phosphorelay response regulator activity|0000156||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632306.1;locus_tag=D5F88_RS04435;product=sensor histidine kinase;protein_id=WP_086163500.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 16750 17577 . - . ID=gene-D5F88_RS04440;Name=D5F88_RS04440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04440;old_locus_tag=D5F88_04445 NZ_QYTI01000034.1 Protein Homology CDS 16750 17577 . - 0 ID=cds-WP_000841957.1;Parent=gene-D5F88_RS04440;Dbxref=GenBank:WP_000841957.1;Name=WP_000841957.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000841956.1;locus_tag=D5F88_RS04440;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_000841957.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 17574 18383 . - . ID=gene-D5F88_RS04445;Name=D5F88_RS04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04445;old_locus_tag=D5F88_04450 NZ_QYTI01000034.1 Protein Homology CDS 17574 18383 . - 0 ID=cds-WP_000605775.1;Parent=gene-D5F88_RS04445;Dbxref=GenBank:WP_000605775.1;Name=WP_000605775.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644846.1;locus_tag=D5F88_RS04445;product=PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC;protein_id=WP_000605775.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 18399 18890 . - . ID=gene-D5F88_RS04450;Name=D5F88_RS04450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04450;old_locus_tag=D5F88_04455 NZ_QYTI01000034.1 Protein Homology CDS 18399 18890 . - 0 ID=cds-WP_000632641.1;Parent=gene-D5F88_RS04450;Dbxref=GenBank:WP_000632641.1;Name=WP_000632641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003048186.1;locus_tag=D5F88_RS04450;product=PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB;protein_id=WP_000632641.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 18908 19333 . - . ID=gene-D5F88_RS04455;Name=D5F88_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04455;old_locus_tag=D5F88_04460 NZ_QYTI01000034.1 Protein Homology CDS 18908 19333 . - 0 ID=cds-WP_000823122.1;Parent=gene-D5F88_RS04455;Dbxref=GenBank:WP_000823122.1;Name=WP_000823122.1;Ontology_term=GO:0009401,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000823118.1;locus_tag=D5F88_RS04455;product=PTS sugar transporter subunit IIA domain-containing protein;protein_id=WP_000823122.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 19580 20614 . - . ID=gene-D5F88_RS04460;Name=D5F88_RS04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04460;old_locus_tag=D5F88_04465 NZ_QYTI01000034.1 Protein Homology CDS 19580 20614 . - 0 ID=cds-WP_180383440.1;Parent=gene-D5F88_RS04460;Dbxref=GenBank:WP_180383440.1;Name=WP_180383440.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643312.1;locus_tag=D5F88_RS04460;product=acyltransferase family protein;protein_id=WP_180383440.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 20843 21997 . - . ID=gene-D5F88_RS04470;Name=D5F88_RS04470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04470;old_locus_tag=D5F88_04475 NZ_QYTI01000034.1 Protein Homology CDS 20843 21997 . - 0 ID=cds-WP_000623425.1;Parent=gene-D5F88_RS04470;Dbxref=GenBank:WP_000623425.1;Name=WP_000623425.1;Ontology_term=GO:0055085,GO:0140359;gbkey=CDS;go_function=ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058800.1;locus_tag=D5F88_RS04470;product=ABC transporter permease subunit;protein_id=WP_000623425.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 22003 22851 . - . ID=gene-D5F88_RS04475;Name=D5F88_RS04475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04475;old_locus_tag=D5F88_04480 NZ_QYTI01000034.1 Protein Homology CDS 22003 22851 . - 0 ID=cds-WP_016503281.1;Parent=gene-D5F88_RS04475;Dbxref=GenBank:WP_016503281.1;Name=WP_016503281.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0140657;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA,ATP-dependent activity|0140657||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000926579.1;locus_tag=D5F88_RS04475;product=ABC transporter ATP-binding protein;protein_id=WP_016503281.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 22920 23093 . - . ID=gene-D5F88_RS04480;Name=D5F88_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04480;old_locus_tag=D5F88_04485 NZ_QYTI01000034.1 Protein Homology CDS 22920 23093 . - 0 ID=cds-WP_086163502.1;Parent=gene-D5F88_RS04480;Dbxref=GenBank:WP_086163502.1;Name=WP_086163502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000683598.1;locus_tag=D5F88_RS04480;product=transcriptional regulator;protein_id=WP_086163502.1;transl_table=11 NZ_QYTI01000034.1 RefSeq pseudogene 23382 23546 . + . ID=gene-D5F88_RS04485;Name=D5F88_RS04485;end_range=23546,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04485;old_locus_tag=D5F88_04490;partial=true;pseudo=true NZ_QYTI01000034.1 Protein Homology CDS 23382 23546 . + 0 ID=cds-D5F88_RS04485;Parent=gene-D5F88_RS04485;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006508,GO:0005524,GO:0008233,GO:0016020;end_range=23546,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000205155.1;locus_tag=D5F88_RS04485;partial=true;product=cysteine peptidase family C39 domain-containing protein;pseudo=true;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 23635 24969 . - . ID=gene-D5F88_RS04490;Name=D5F88_RS04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04490;old_locus_tag=D5F88_04495 NZ_QYTI01000034.1 Protein Homology CDS 23635 24969 . - 0 ID=cds-WP_086163503.1;Parent=gene-D5F88_RS04490;Dbxref=GenBank:WP_086163503.1;Name=WP_086163503.1;Ontology_term=GO:0007165,GO:0000155,GO:0000156,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,phosphorelay response regulator activity|0000156||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001089363.1;locus_tag=D5F88_RS04490;product=sensor histidine kinase;protein_id=WP_086163503.1;transl_table=11 NZ_QYTI01000034.1 RefSeq pseudogene 24966 25718 . - . ID=gene-D5F88_RS04495;Name=D5F88_RS04495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04495;old_locus_tag=D5F88_04500;pseudo=true NZ_QYTI01000034.1 Protein Homology CDS 24966 25718 . - 0 ID=cds-D5F88_RS04495;Parent=gene-D5F88_RS04495;Note=internal stop;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645527.1;locus_tag=D5F88_RS04495;product=LytTR family transcriptional regulator DNA-binding domain-containing protein;pseudo=true;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 25934 26749 . - . ID=gene-D5F88_RS04505;Name=D5F88_RS04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04505;old_locus_tag=D5F88_04510 NZ_QYTI01000034.1 Protein Homology CDS 25934 26749 . - 0 ID=cds-WP_307777635.1;Parent=gene-D5F88_RS04505;Dbxref=GenBank:WP_307777635.1;Name=WP_307777635.1;Ontology_term=GO:0003677,GO:0016787,GO:0046872;gbkey=CDS;go_function=DNA binding|0003677||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001029870.1;locus_tag=D5F88_RS04505;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_307777635.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 26803 28986 . - . ID=gene-D5F88_RS04510;Name=D5F88_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04510;old_locus_tag=D5F88_04515 NZ_QYTI01000034.1 Protein Homology CDS 26803 28986 . - 0 ID=cds-WP_086163505.1;Parent=gene-D5F88_RS04510;Dbxref=GenBank:WP_086163505.1;Name=WP_086163505.1;Ontology_term=GO:0015144;gbkey=CDS;go_function=carbohydrate transmembrane transporter activity|0015144||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000795069.1;locus_tag=D5F88_RS04510;product=PTS transporter subunit IIBC;protein_id=WP_086163505.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 29144 30799 . - . ID=gene-D5F88_RS04515;Name=D5F88_RS04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04515;old_locus_tag=D5F88_04520 NZ_QYTI01000034.1 Protein Homology CDS 29144 30799 . - 0 ID=cds-WP_000162292.1;Parent=gene-D5F88_RS04515;Dbxref=GenBank:WP_000162292.1;Name=WP_000162292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000162297.1;locus_tag=D5F88_RS04515;product=sensor histidine kinase;protein_id=WP_000162292.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 30792 31469 . - . ID=gene-D5F88_RS04520;Name=D5F88_RS04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04520;old_locus_tag=D5F88_04525 NZ_QYTI01000034.1 Protein Homology CDS 30792 31469 . - 0 ID=cds-WP_000638643.1;Parent=gene-D5F88_RS04520;Dbxref=GenBank:WP_000638643.1;Name=WP_000638643.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001931721.1;locus_tag=D5F88_RS04520;product=winged helix-turn-helix domain-containing protein;protein_id=WP_000638643.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 31469 32125 . - . ID=gene-D5F88_RS04525;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=D5F88_RS04525;old_locus_tag=D5F88_04530 NZ_QYTI01000034.1 Protein Homology CDS 31469 32125 . - 0 ID=cds-WP_000621377.1;Parent=gene-D5F88_RS04525;Dbxref=GenBank:WP_000621377.1;Name=WP_000621377.1;Ontology_term=GO:0006817,GO:0030643,GO:0045936;gbkey=CDS;gene=phoU;go_process=phosphate ion transport|0006817||IEA,intracellular phosphate ion homeostasis|0030643||IEA,negative regulation of phosphate metabolic process|0045936||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000621378.1;locus_tag=D5F88_RS04525;product=phosphate signaling complex protein PhoU;protein_id=WP_000621377.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 32122 32871 . - . ID=gene-D5F88_RS04530;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=D5F88_RS04530;old_locus_tag=D5F88_04535 NZ_QYTI01000034.1 Protein Homology CDS 32122 32871 . - 0 ID=cds-WP_016503286.1;Parent=gene-D5F88_RS04530;Dbxref=GenBank:WP_016503286.1;Name=WP_016503286.1;Ontology_term=GO:0006817,GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000041123.1;locus_tag=D5F88_RS04530;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_016503286.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 32864 33742 . - . ID=gene-D5F88_RS04535;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=D5F88_RS04535;old_locus_tag=D5F88_04540 NZ_QYTI01000034.1 Protein Homology CDS 32864 33742 . - 0 ID=cds-WP_000427916.1;Parent=gene-D5F88_RS04535;Dbxref=GenBank:WP_000427916.1;Name=WP_000427916.1;Ontology_term=GO:0006817,GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstA;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000427916.1;locus_tag=D5F88_RS04535;product=phosphate ABC transporter permease PstA;protein_id=WP_000427916.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 33744 34589 . - . ID=gene-D5F88_RS04540;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=D5F88_RS04540;old_locus_tag=D5F88_04545 NZ_QYTI01000034.1 Protein Homology CDS 33744 34589 . - 0 ID=cds-WP_000814831.1;Parent=gene-D5F88_RS04540;Dbxref=GenBank:WP_000814831.1;Name=WP_000814831.1;Ontology_term=GO:0006817,GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstC;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481285.1;locus_tag=D5F88_RS04540;product=phosphate ABC transporter permease subunit PstC;protein_id=WP_000814831.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 34604 35485 . - . ID=gene-D5F88_RS04545;Name=D5F88_RS04545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04545;old_locus_tag=D5F88_04550 NZ_QYTI01000034.1 Protein Homology CDS 34604 35485 . - 0 ID=cds-WP_000716331.1;Parent=gene-D5F88_RS04545;Dbxref=GenBank:WP_000716331.1;Name=WP_000716331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000716337.1;locus_tag=D5F88_RS04545;product=substrate-binding domain-containing protein;protein_id=WP_000716331.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 35615 36175 . - . ID=gene-D5F88_RS04550;Name=D5F88_RS04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04550;old_locus_tag=D5F88_04555 NZ_QYTI01000034.1 Protein Homology CDS 35615 36175 . - 0 ID=cds-WP_016503288.1;Parent=gene-D5F88_RS04550;Dbxref=GenBank:WP_016503288.1;Name=WP_016503288.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000582351.1;locus_tag=D5F88_RS04550;product=AAA family ATPase;protein_id=WP_016503288.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 36172 36912 . - . ID=gene-D5F88_RS04555;Name=D5F88_RS04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04555;old_locus_tag=D5F88_04560 NZ_QYTI01000034.1 Protein Homology CDS 36172 36912 . - 0 ID=cds-WP_016503289.1;Parent=gene-D5F88_RS04555;Dbxref=GenBank:WP_016503289.1;Name=WP_016503289.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001188249.1;locus_tag=D5F88_RS04555;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=WP_016503289.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 36912 37865 . - . ID=gene-D5F88_RS04560;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=D5F88_RS04560;old_locus_tag=D5F88_04565 NZ_QYTI01000034.1 Protein Homology CDS 36912 37865 . - 0 ID=cds-WP_016503290.1;Parent=gene-D5F88_RS04560;Dbxref=GenBank:WP_016503290.1;Name=WP_016503290.1;Ontology_term=GO:0036211,GO:0008757;gbkey=CDS;gene=prmA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011225343.1;locus_tag=D5F88_RS04560;product=50S ribosomal protein L11 methyltransferase;protein_id=WP_016503290.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 37862 38326 . - . ID=gene-D5F88_RS04565;Name=D5F88_RS04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04565;old_locus_tag=D5F88_04570 NZ_QYTI01000034.1 Protein Homology CDS 37862 38326 . - 0 ID=cds-WP_307777622.1;Parent=gene-D5F88_RS04565;Dbxref=GenBank:WP_307777622.1;Name=WP_307777622.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF020451.6;locus_tag=D5F88_RS04565;product=MepB family protein;protein_id=WP_307777622.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 38444 39160 . + . ID=gene-D5F88_RS04570;Name=D5F88_RS04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04570;old_locus_tag=D5F88_04575 NZ_QYTI01000034.1 Protein Homology CDS 38444 39160 . + 0 ID=cds-WP_000859570.1;Parent=gene-D5F88_RS04570;Dbxref=GenBank:WP_000859570.1;Name=WP_000859570.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481292.1;locus_tag=D5F88_RS04570;product=MerR family transcriptional regulator;protein_id=WP_000859570.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 39199 39669 . - . ID=gene-D5F88_RS04575;Name=D5F88_RS04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04575;old_locus_tag=D5F88_04580 NZ_QYTI01000034.1 Protein Homology CDS 39199 39669 . - 0 ID=cds-WP_000631751.1;Parent=gene-D5F88_RS04575;Dbxref=GenBank:WP_000631751.1;Name=WP_000631751.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644311.1;locus_tag=D5F88_RS04575;product=GNAT family N-acetyltransferase;protein_id=WP_000631751.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 39641 40099 . - . ID=gene-D5F88_RS04580;Name=D5F88_RS04580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04580;old_locus_tag=D5F88_04585 NZ_QYTI01000034.1 Protein Homology CDS 39641 40099 . - 0 ID=cds-WP_000376720.1;Parent=gene-D5F88_RS04580;Dbxref=GenBank:WP_000376720.1;Name=WP_000376720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000350740.1;locus_tag=D5F88_RS04580;product=NUDIX hydrolase;protein_id=WP_000376720.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 40092 40400 . - . ID=gene-D5F88_RS11710;Name=D5F88_RS11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11710 NZ_QYTI01000034.1 Protein Homology CDS 40092 40400 . - 0 ID=cds-WP_001868493.1;Parent=gene-D5F88_RS11710;Dbxref=GenBank:WP_001868493.1;Name=WP_001868493.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001868493.1;locus_tag=D5F88_RS11710;product=hypothetical protein;protein_id=WP_001868493.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 40443 40913 . - . ID=gene-D5F88_RS04590;Name=D5F88_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04590;old_locus_tag=D5F88_04595 NZ_QYTI01000034.1 Protein Homology CDS 40443 40913 . - 0 ID=cds-WP_086163509.1;Parent=gene-D5F88_RS04590;Dbxref=GenBank:WP_086163509.1;Name=WP_086163509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771424.1;locus_tag=D5F88_RS04590;product=DUF3013 family protein;protein_id=WP_086163509.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 40987 41514 . - . ID=gene-D5F88_RS04595;Name=D5F88_RS04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04595;old_locus_tag=D5F88_04600 NZ_QYTI01000034.1 Protein Homology CDS 40987 41514 . - 0 ID=cds-WP_086163510.1;Parent=gene-D5F88_RS04595;Dbxref=GenBank:WP_086163510.1;Name=WP_086163510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001031088.1;locus_tag=D5F88_RS04595;product=DUF3278 domain-containing protein;protein_id=WP_086163510.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 41517 41705 . - . ID=gene-D5F88_RS04600;Name=D5F88_RS04600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04600;old_locus_tag=D5F88_04605 NZ_QYTI01000034.1 Protein Homology CDS 41517 41705 . - 0 ID=cds-WP_001082462.1;Parent=gene-D5F88_RS04600;Dbxref=GenBank:WP_001082462.1;Name=WP_001082462.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001082465.1;locus_tag=D5F88_RS04600;product=helix-turn-helix transcriptional regulator;protein_id=WP_001082462.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 42310 42801 . + . ID=gene-D5F88_RS04605;Name=D5F88_RS04605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04605;old_locus_tag=D5F88_04610 NZ_QYTI01000034.1 Protein Homology CDS 42310 42801 . + 0 ID=cds-WP_086163511.1;Parent=gene-D5F88_RS04605;Dbxref=GenBank:WP_086163511.1;Name=WP_086163511.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001879696.1;locus_tag=D5F88_RS04605;product=GNAT family N-acetyltransferase;protein_id=WP_086163511.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 42794 44062 . + . ID=gene-D5F88_RS04610;Name=D5F88_RS04610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04610;old_locus_tag=D5F88_04615 NZ_QYTI01000034.1 Protein Homology CDS 42794 44062 . + 0 ID=cds-WP_086163512.1;Parent=gene-D5F88_RS04610;Dbxref=GenBank:WP_086163512.1;Name=WP_086163512.1;Ontology_term=GO:0006260,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000774759.1;locus_tag=D5F88_RS04610;product=replication-associated recombination protein A;protein_id=WP_086163512.1;transl_table=11 NZ_QYTI01000034.1 RefSeq gene 44132 44324 . + . ID=gene-D5F88_RS11940;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=D5F88_RS11940;old_locus_tag=D5F88_04620 NZ_QYTI01000034.1 cmsearch ncRNA 44132 44324 . + . ID=rna-D5F88_RS11940;Parent=gene-D5F88_RS11940;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS11940;product=6S RNA NZ_QYTI01000034.1 cmsearch exon 44132 44324 . + . ID=exon-D5F88_RS11940-1;Parent=rna-D5F88_RS11940;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS11940;product=6S RNA NZ_QYTI01000034.1 RefSeq gene 44325 44397 . + . ID=gene-D5F88_RS04620;Name=D5F88_RS04620;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS04620;old_locus_tag=D5F88_04625 NZ_QYTI01000034.1 tRNAscan-SE tRNA 44325 44397 . + . ID=rna-D5F88_RS04620;Parent=gene-D5F88_RS04620;anticodon=(pos:44358..44360);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04620;product=tRNA-Lys NZ_QYTI01000034.1 tRNAscan-SE exon 44325 44397 . + . ID=exon-D5F88_RS04620-1;Parent=rna-D5F88_RS04620;anticodon=(pos:44358..44360);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS04620;product=tRNA-Lys NZ_QYTI01000034.1 RefSeq gene 44873 45961 . - . ID=gene-D5F88_RS04630;Name=D5F88_RS04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04630;old_locus_tag=D5F88_04635 NZ_QYTI01000034.1 GeneMarkS-2+ CDS 44873 45961 . - 0 ID=cds-WP_016503297.1;Parent=gene-D5F88_RS04630;Dbxref=GenBank:WP_016503297.1;Name=WP_016503297.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS04630;product=Type III restriction-modification system DNA endonuclease res;protein_id=WP_016503297.1;transl_table=11 NZ_QYTI01000034.1 RefSeq pseudogene 45981 46899 . + . ID=gene-D5F88_RS04640;Name=D5F88_RS04640;end_range=46899,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04640;old_locus_tag=D5F88_04645;partial=true;pseudo=true NZ_QYTI01000034.1 Protein Homology CDS 45981 46899 . + 0 ID=cds-D5F88_RS04640;Parent=gene-D5F88_RS04640;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0004803;end_range=46899,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS04640;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000035.1 1 12333 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000035.1 RefSeq region 1 12333 . + . ID=NZ_QYTI01000035.1:1..12333;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000035.1 RefSeq pseudogene 1 214 . - . ID=gene-D5F88_RS04645;Name=D5F88_RS04645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04645;old_locus_tag=D5F88_04650;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000035.1 Protein Homology CDS 1 214 . - 0 ID=cds-D5F88_RS04645;Parent=gene-D5F88_RS04645;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644211.1;locus_tag=D5F88_RS04645;partial=true;product=peptide ABC transporter substrate-binding protein;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 445 1680 . + . ID=gene-D5F88_RS04650;Name=pbp3;gbkey=Gene;gene=pbp3;gene_biotype=protein_coding;locus_tag=D5F88_RS04650;old_locus_tag=D5F88_04655 NZ_QYTI01000035.1 Protein Homology CDS 445 1680 . + 0 ID=cds-WP_086163187.1;Parent=gene-D5F88_RS04650;Dbxref=GenBank:WP_086163187.1;Name=WP_086163187.1;gbkey=CDS;gene=pbp3;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000720947.1;locus_tag=D5F88_RS04650;product=D-alanyl-D-alanine carboxypeptidase PBP3;protein_id=WP_086163187.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 1832 3013 . + . ID=gene-D5F88_RS04655;Name=D5F88_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04655;old_locus_tag=D5F88_04660 NZ_QYTI01000035.1 Protein Homology CDS 1832 3013 . + 0 ID=cds-WP_086163186.1;Parent=gene-D5F88_RS04655;Dbxref=GenBank:WP_086163186.1;Name=WP_086163186.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001125231.1;locus_tag=D5F88_RS04655;product=D-alanyl-D-alanine carboxypeptidase family protein;protein_id=WP_086163186.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 3084 4502 . - . ID=gene-D5F88_RS04660;Name=sufB;gbkey=Gene;gene=sufB;gene_biotype=protein_coding;locus_tag=D5F88_RS04660;old_locus_tag=D5F88_04665 NZ_QYTI01000035.1 Protein Homology CDS 3084 4502 . - 0 ID=cds-WP_001289834.1;Parent=gene-D5F88_RS04660;Dbxref=GenBank:WP_001289834.1;Name=WP_001289834.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufB;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017769002.1;locus_tag=D5F88_RS04660;product=Fe-S cluster assembly protein SufB;protein_id=WP_001289834.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 4602 5045 . - . ID=gene-D5F88_RS04665;Name=sufU;gbkey=Gene;gene=sufU;gene_biotype=protein_coding;locus_tag=D5F88_RS04665;old_locus_tag=D5F88_04670 NZ_QYTI01000035.1 Protein Homology CDS 4602 5045 . - 0 ID=cds-WP_001218456.1;Parent=gene-D5F88_RS04665;Dbxref=GenBank:WP_001218456.1;Name=WP_001218456.1;Ontology_term=GO:0016226,GO:0005198;gbkey=CDS;gene=sufU;go_function=structural molecule activity|0005198||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001218456.1;locus_tag=D5F88_RS04665;product=Fe-S cluster assembly sulfur transfer protein SufU;protein_id=WP_001218456.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 5032 6264 . - . ID=gene-D5F88_RS04670;Name=D5F88_RS04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04670;old_locus_tag=D5F88_04675 NZ_QYTI01000035.1 Protein Homology CDS 5032 6264 . - 0 ID=cds-WP_016502421.1;Parent=gene-D5F88_RS04670;Dbxref=GenBank:WP_016502421.1;Name=WP_016502421.1;Ontology_term=GO:0006534,GO:0030170,GO:0031071;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=cysteine metabolic process|0006534||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000173342.1;locus_tag=D5F88_RS04670;product=cysteine desulfurase;protein_id=WP_016502421.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 6266 7528 . - . ID=gene-D5F88_RS04675;Name=sufD;gbkey=Gene;gene=sufD;gene_biotype=protein_coding;locus_tag=D5F88_RS04675;old_locus_tag=D5F88_04680 NZ_QYTI01000035.1 Protein Homology CDS 6266 7528 . - 0 ID=cds-WP_086163185.1;Parent=gene-D5F88_RS04675;Dbxref=GenBank:WP_086163185.1;Name=WP_086163185.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufD;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019805197.1;locus_tag=D5F88_RS04675;product=Fe-S cluster assembly protein SufD;protein_id=WP_086163185.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 7565 8335 . - . ID=gene-D5F88_RS04680;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=D5F88_RS04680;old_locus_tag=D5F88_04685 NZ_QYTI01000035.1 Protein Homology CDS 7565 8335 . - 0 ID=cds-WP_000114502.1;Parent=gene-D5F88_RS04680;Dbxref=GenBank:WP_000114502.1;Name=WP_000114502.1;Ontology_term=GO:0016226,GO:0005524;gbkey=CDS;gene=sufC;go_function=ATP binding|0005524||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000114500.1;locus_tag=D5F88_RS04680;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_000114502.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 8500 9660 . - . ID=gene-D5F88_RS04685;Name=D5F88_RS04685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04685;old_locus_tag=D5F88_04690 NZ_QYTI01000035.1 Protein Homology CDS 8500 9660 . - 0 ID=cds-WP_000612108.1;Parent=gene-D5F88_RS04685;Dbxref=GenBank:WP_000612108.1;Name=WP_000612108.1;Ontology_term=GO:0070085,GO:0016757,GO:0016780,GO:0046872;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA,metal ion binding|0046872||IEA;go_process=glycosylation|0070085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000612108.1;locus_tag=D5F88_RS04685;product=glycosyltransferase family 4 protein;protein_id=WP_000612108.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 9662 10417 . - . ID=gene-D5F88_RS04690;Name=mecA;gbkey=Gene;gene=mecA;gene_biotype=protein_coding;locus_tag=D5F88_RS04690;old_locus_tag=D5F88_04695 NZ_QYTI01000035.1 Protein Homology CDS 9662 10417 . - 0 ID=cds-WP_000425371.1;Parent=gene-D5F88_RS04690;Dbxref=GenBank:WP_000425371.1;Name=WP_000425371.1;gbkey=CDS;gene=mecA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000425372.1;locus_tag=D5F88_RS04690;product=adaptor protein MecA;protein_id=WP_000425371.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 10537 11376 . - . ID=gene-D5F88_RS04695;Name=D5F88_RS04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04695;old_locus_tag=D5F88_04700 NZ_QYTI01000035.1 Protein Homology CDS 10537 11376 . - 0 ID=cds-WP_000905327.1;Parent=gene-D5F88_RS04695;Dbxref=GenBank:WP_000905327.1;Name=WP_000905327.1;Ontology_term=GO:0016311,GO:0050380,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000905329.1;locus_tag=D5F88_RS04695;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_000905327.1;transl_table=11 NZ_QYTI01000035.1 RefSeq gene 11422 12333 . - . ID=gene-D5F88_RS04700;Name=D5F88_RS04700;end_range=12333,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04700;old_locus_tag=D5F88_04705;partial=true NZ_QYTI01000035.1 Protein Homology CDS 11422 12333 . - 0 ID=cds-WP_142997435.1;Parent=gene-D5F88_RS04700;Dbxref=GenBank:WP_142997435.1;Name=WP_142997435.1;end_range=12333,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000710501.1;locus_tag=D5F88_RS04700;partial=true;product=DUF2207 family protein;protein_id=WP_142997435.1;transl_table=11 ##sequence-region NZ_QYTI01000036.1 1 2340 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000036.1 RefSeq region 1 2340 . + . ID=NZ_QYTI01000036.1:1..2340;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000036.1 RefSeq gene 1 289 . - . ID=gene-D5F88_RS04705;Name=D5F88_RS04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04705;old_locus_tag=D5F88_04710;partial=true;start_range=.,1 NZ_QYTI01000036.1 Protein Homology CDS 1 289 . - 0 ID=cds-WP_142997436.1;Parent=gene-D5F88_RS04705;Dbxref=GenBank:WP_142997436.1;Name=WP_142997436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000468698.1;locus_tag=D5F88_RS04705;partial=true;product=transposase;protein_id=WP_142997436.1;start_range=.,1;transl_table=11 NZ_QYTI01000036.1 RefSeq gene 439 1875 . - . ID=gene-D5F88_RS04710;Name=D5F88_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04710;old_locus_tag=D5F88_04715 NZ_QYTI01000036.1 Protein Homology CDS 439 1875 . - 0 ID=cds-WP_124773257.1;Parent=gene-D5F88_RS04710;Dbxref=GenBank:WP_124773257.1;Name=WP_124773257.1;Ontology_term=GO:0009986;gbkey=CDS;go_component=cell surface|0009986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015898628.1;locus_tag=D5F88_RS04710;product=LPXTG cell wall anchor domain-containing protein;protein_id=WP_124773257.1;transl_table=11 NZ_QYTI01000036.1 RefSeq gene 2106 2340 . + . ID=gene-D5F88_RS04715;Name=D5F88_RS04715;end_range=2340,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04715;old_locus_tag=D5F88_04720;partial=true NZ_QYTI01000036.1 Protein Homology CDS 2106 2340 . + 0 ID=cds-WP_142997437.1;Parent=gene-D5F88_RS04715;Dbxref=GenBank:WP_142997437.1;Name=WP_142997437.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2340,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS04715;partial=true;product=transposase;protein_id=WP_142997437.1;transl_table=11 ##sequence-region NZ_QYTI01000037.1 1 12296 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000037.1 RefSeq region 1 12296 . + . ID=NZ_QYTI01000037.1:1..12296;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000037.1 RefSeq gene 1 229 . + . ID=gene-D5F88_RS04720;Name=D5F88_RS04720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04720;old_locus_tag=D5F88_04725;partial=true;start_range=.,1 NZ_QYTI01000037.1 Protein Homology CDS 1 229 . + 1 ID=cds-WP_124773259.1;Parent=gene-D5F88_RS04720;Dbxref=GenBank:WP_124773259.1;Name=WP_124773259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001267199.1;locus_tag=D5F88_RS04720;partial=true;product=CD1845 family protein;protein_id=WP_124773259.1;start_range=.,1;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 266 784 . + . ID=gene-D5F88_RS04725;Name=D5F88_RS04725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04725;old_locus_tag=D5F88_04730 NZ_QYTI01000037.1 Protein Homology CDS 266 784 . + 0 ID=cds-WP_086163267.1;Parent=gene-D5F88_RS04725;Dbxref=GenBank:WP_086163267.1;Name=WP_086163267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013852041.1;locus_tag=D5F88_RS04725;product=ClbS/DfsB family four-helix bundle protein;protein_id=WP_086163267.1;transl_table=11 NZ_QYTI01000037.1 RefSeq pseudogene 894 1373 . + . ID=gene-D5F88_RS04730;Name=D5F88_RS04730;end_range=1373,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04730;old_locus_tag=D5F88_04735;partial=true;pseudo=true NZ_QYTI01000037.1 Protein Homology CDS 894 1373 . + 0 ID=cds-D5F88_RS04730;Parent=gene-D5F88_RS04730;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1373,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018365310.1;locus_tag=D5F88_RS04730;partial=true;product=replication initiator protein A;pseudo=true;transl_table=11 NZ_QYTI01000037.1 RefSeq pseudogene 1384 2268 . - . ID=gene-D5F88_RS04735;Name=D5F88_RS04735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04735;old_locus_tag=D5F88_04740;partial=true;pseudo=true;start_range=.,1384 NZ_QYTI01000037.1 Protein Homology CDS 1384 2268 . - 0 ID=cds-D5F88_RS04735;Parent=gene-D5F88_RS04735;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001820672.1;locus_tag=D5F88_RS04735;partial=true;product=relaxase/mobilization nuclease domain-containing protein;pseudo=true;start_range=.,1384;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 2274 2624 . - . ID=gene-D5F88_RS04740;Name=D5F88_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04740;old_locus_tag=D5F88_04745 NZ_QYTI01000037.1 Protein Homology CDS 2274 2624 . - 0 ID=cds-WP_086163269.1;Parent=gene-D5F88_RS04740;Dbxref=GenBank:WP_086163269.1;Name=WP_086163269.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006270454.1;locus_tag=D5F88_RS04740;product=plasmid mobilization protein;protein_id=WP_086163269.1;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 3074 3679 . + . ID=gene-D5F88_RS04745;Name=D5F88_RS04745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04745;old_locus_tag=D5F88_04750 NZ_QYTI01000037.1 Protein Homology CDS 3074 3679 . + 0 ID=cds-WP_124759474.1;Parent=gene-D5F88_RS04745;Dbxref=GenBank:WP_124759474.1;Name=WP_124759474.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000332326.1;locus_tag=D5F88_RS04745;product=TetR/AcrR family transcriptional regulator;protein_id=WP_124759474.1;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 3797 5710 . + . ID=gene-D5F88_RS04750;Name=D5F88_RS04750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04750;old_locus_tag=D5F88_04755 NZ_QYTI01000037.1 Protein Homology CDS 3797 5710 . + 0 ID=cds-WP_124773261.1;Parent=gene-D5F88_RS04750;Dbxref=GenBank:WP_124773261.1;Name=WP_124773261.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018377832.1;locus_tag=D5F88_RS04750;product=ABC transporter ATP-binding protein;protein_id=WP_124773261.1;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 5714 7450 . + . ID=gene-D5F88_RS04755;Name=D5F88_RS04755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04755;old_locus_tag=D5F88_04760 NZ_QYTI01000037.1 Protein Homology CDS 5714 7450 . + 0 ID=cds-WP_086163271.1;Parent=gene-D5F88_RS04755;Dbxref=GenBank:WP_086163271.1;Name=WP_086163271.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000668731.1;locus_tag=D5F88_RS04755;product=ABC transporter ATP-binding protein;protein_id=WP_086163271.1;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 7481 8062 . + . ID=gene-D5F88_RS04760;Name=D5F88_RS04760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04760;old_locus_tag=D5F88_04765 NZ_QYTI01000037.1 Protein Homology CDS 7481 8062 . + 0 ID=cds-WP_004819285.1;Parent=gene-D5F88_RS04760;Dbxref=GenBank:WP_004819285.1;Name=WP_004819285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000368966.1;locus_tag=D5F88_RS04760;product=MptD family putative ECF transporter S component;protein_id=WP_004819285.1;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 8062 8754 . + . ID=gene-D5F88_RS04765;Name=D5F88_RS04765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04765;old_locus_tag=D5F88_04770 NZ_QYTI01000037.1 Protein Homology CDS 8062 8754 . + 0 ID=cds-WP_086163272.1;Parent=gene-D5F88_RS04765;Dbxref=GenBank:WP_086163272.1;Name=WP_086163272.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000269781.1;locus_tag=D5F88_RS04765;product=energy-coupling factor transporter transmembrane component T family protein;protein_id=WP_086163272.1;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 8742 10151 . + . ID=gene-D5F88_RS04770;Name=D5F88_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04770;old_locus_tag=D5F88_04775 NZ_QYTI01000037.1 Protein Homology CDS 8742 10151 . + 0 ID=cds-WP_086163273.1;Parent=gene-D5F88_RS04770;Dbxref=GenBank:WP_086163273.1;Name=WP_086163273.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000889914.1;locus_tag=D5F88_RS04770;product=ABC transporter ATP-binding protein;protein_id=WP_086163273.1;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 10188 11540 . + . ID=gene-D5F88_RS04775;Name=D5F88_RS04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04775;old_locus_tag=D5F88_04780 NZ_QYTI01000037.1 Protein Homology CDS 10188 11540 . + 0 ID=cds-WP_086163274.1;Parent=gene-D5F88_RS04775;Dbxref=GenBank:WP_086163274.1;Name=WP_086163274.1;Ontology_term=GO:0006855,GO:0055085,GO:0015297,GO:0042910,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA,xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic transmembrane transport|0006855||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009537685.1;locus_tag=D5F88_RS04775;product=MATE family efflux transporter;protein_id=WP_086163274.1;transl_table=11 NZ_QYTI01000037.1 RefSeq pseudogene 11811 11981 . + . ID=gene-D5F88_RS04780;Name=D5F88_RS04780;end_range=11981,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04780;old_locus_tag=D5F88_04785;partial=true;pseudo=true NZ_QYTI01000037.1 Protein Homology CDS 11811 11981 . + 0 ID=cds-D5F88_RS04780;Parent=gene-D5F88_RS04780;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=11981,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004634151.1;locus_tag=D5F88_RS04780;partial=true;product=sigma-70 family RNA polymerase sigma factor;pseudo=true;transl_table=11 NZ_QYTI01000037.1 RefSeq gene 12017 12296 . - . ID=gene-D5F88_RS04785;Name=D5F88_RS04785;end_range=12296,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04785;old_locus_tag=D5F88_04790;partial=true NZ_QYTI01000037.1 Protein Homology CDS 12017 12296 . - 1 ID=cds-WP_142997438.1;Parent=gene-D5F88_RS04785;Dbxref=GenBank:WP_142997438.1;Name=WP_142997438.1;Ontology_term=GO:0015074;end_range=12296,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS04785;partial=true;product=integrase core domain-containing protein;protein_id=WP_142997438.1;transl_table=11 ##sequence-region NZ_QYTI01000038.1 1 9096 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000038.1 RefSeq region 1 9096 . + . ID=NZ_QYTI01000038.1:1..9096;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000038.1 RefSeq gene 1 2638 . - . ID=gene-D5F88_RS04790;Name=D5F88_RS04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04790;old_locus_tag=D5F88_04795;partial=true;start_range=.,1 NZ_QYTI01000038.1 Protein Homology CDS 1 2638 . - 0 ID=cds-WP_124773265.1;Parent=gene-D5F88_RS04790;Dbxref=GenBank:WP_124773265.1;Name=WP_124773265.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000039453.1;locus_tag=D5F88_RS04790;partial=true;product=accessory Sec-dependent serine-rich glycoprotein adhesin;protein_id=WP_124773265.1;start_range=.,1;transl_table=11 NZ_QYTI01000038.1 RefSeq gene 3020 4513 . + . ID=gene-D5F88_RS04795;Name=D5F88_RS04795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04795;old_locus_tag=D5F88_04800 NZ_QYTI01000038.1 Protein Homology CDS 3020 4513 . + 0 ID=cds-WP_086163420.1;Parent=gene-D5F88_RS04795;Dbxref=GenBank:WP_086163420.1;Name=WP_086163420.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646645.1;locus_tag=D5F88_RS04795;product=helix-turn-helix domain-containing protein;protein_id=WP_086163420.1;transl_table=11 NZ_QYTI01000038.1 RefSeq gene 4611 6602 . - . ID=gene-D5F88_RS04800;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=D5F88_RS04800;old_locus_tag=D5F88_04805 NZ_QYTI01000038.1 Protein Homology CDS 4611 6602 . - 0 ID=cds-WP_016503053.1;Parent=gene-D5F88_RS04800;Dbxref=GenBank:WP_016503053.1;Name=WP_016503053.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002261961.1;locus_tag=D5F88_RS04800;product=excinuclease ABC subunit UvrB;protein_id=WP_016503053.1;transl_table=11 NZ_QYTI01000038.1 RefSeq gene 6663 7583 . - . ID=gene-D5F88_RS04805;Name=D5F88_RS04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04805;old_locus_tag=D5F88_04810 NZ_QYTI01000038.1 Protein Homology CDS 6663 7583 . - 0 ID=cds-WP_016481036.1;Parent=gene-D5F88_RS04805;Dbxref=GenBank:WP_016481036.1;Name=WP_016481036.1;Ontology_term=GO:0071586,GO:0004222,GO:0070007,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,glutamic-type endopeptidase activity|0070007||IEA;go_process=CAAX-box protein processing|0071586||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767142.1;locus_tag=D5F88_RS04805;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_016481036.1;transl_table=11 NZ_QYTI01000038.1 RefSeq gene 7766 9096 . + . ID=gene-D5F88_RS04810;Name=D5F88_RS04810;end_range=9096,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04810;old_locus_tag=D5F88_04815;partial=true NZ_QYTI01000038.1 Protein Homology CDS 7766 9096 . + 0 ID=cds-WP_124773263.1;Parent=gene-D5F88_RS04810;Dbxref=GenBank:WP_124773263.1;Name=WP_124773263.1;end_range=9096,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000681008.1;locus_tag=D5F88_RS04810;partial=true;product=transporter substrate-binding domain-containing protein;protein_id=WP_124773263.1;transl_table=11 ##sequence-region NZ_QYTI01000039.1 1 5318 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000039.1 RefSeq region 1 5318 . + . ID=NZ_QYTI01000039.1:1..5318;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000039.1 RefSeq gene 1 987 . + . ID=gene-D5F88_RS04815;Name=D5F88_RS04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04815;old_locus_tag=D5F88_04820;partial=true;start_range=.,1 NZ_QYTI01000039.1 Protein Homology CDS 1 987 . + 0 ID=cds-WP_124773267.1;Parent=gene-D5F88_RS04815;Dbxref=GenBank:WP_124773267.1;Name=WP_124773267.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000776693.1;locus_tag=D5F88_RS04815;partial=true;product=PucR family transcriptional regulator;protein_id=WP_124773267.1;start_range=.,1;transl_table=11 NZ_QYTI01000039.1 RefSeq gene 1055 2482 . - . ID=gene-D5F88_RS04820;Name=D5F88_RS04820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04820;old_locus_tag=D5F88_04825 NZ_QYTI01000039.1 Protein Homology CDS 1055 2482 . - 0 ID=cds-WP_016502796.1;Parent=gene-D5F88_RS04820;Dbxref=GenBank:WP_016502796.1;Name=WP_016502796.1;Ontology_term=GO:0005975,GO:0016798;gbkey=CDS;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650878.1;locus_tag=D5F88_RS04820;product=glycoside hydrolase family 1 protein;protein_id=WP_016502796.1;transl_table=11 NZ_QYTI01000039.1 RefSeq gene 2499 4367 . - . ID=gene-D5F88_RS04825;Name=D5F88_RS04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04825;old_locus_tag=D5F88_04830 NZ_QYTI01000039.1 Protein Homology CDS 2499 4367 . - 0 ID=cds-WP_016502795.1;Parent=gene-D5F88_RS04825;Dbxref=GenBank:WP_016502795.1;Name=WP_016502795.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000170539.1;locus_tag=D5F88_RS04825;product=PTS beta-glucoside transporter subunit IIBCA;protein_id=WP_016502795.1;transl_table=11 NZ_QYTI01000039.1 RefSeq pseudogene 4360 5070 . - . ID=gene-D5F88_RS04830;Name=D5F88_RS04830;end_range=5070,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04830;old_locus_tag=D5F88_04835;partial=true;pseudo=true NZ_QYTI01000039.1 Protein Homology CDS 4360 5070 . - 0 ID=cds-D5F88_RS04830;Parent=gene-D5F88_RS04830;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006355;end_range=5070,.;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649835.1;locus_tag=D5F88_RS04830;partial=true;product=PRD domain-containing protein;pseudo=true;transl_table=11 NZ_QYTI01000039.1 RefSeq gene 5151 5318 . + . ID=gene-D5F88_RS04835;Name=D5F88_RS04835;end_range=5318,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04835;old_locus_tag=D5F88_04840;partial=true NZ_QYTI01000039.1 Protein Homology CDS 5151 5318 . + 0 ID=cds-WP_142358787.1;Parent=gene-D5F88_RS04835;Dbxref=GenBank:WP_142358787.1;Name=WP_142358787.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=5318,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS04835;partial=true;product=transposase;protein_id=WP_142358787.1;transl_table=11 ##sequence-region NZ_QYTI01000004.1 1 27203 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000004.1 RefSeq region 1 27203 . + . ID=NZ_QYTI01000004.1:1..27203;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000004.1 RefSeq gene 1 231 . - . ID=gene-D5F88_RS11750;Name=D5F88_RS11750;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS11750;partial=true;start_range=.,1 NZ_QYTI01000004.1 cmsearch rRNA 1 231 . - . ID=rna-D5F88_RS11750;Parent=gene-D5F88_RS11750;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS11750;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_QYTI01000004.1 cmsearch exon 1 231 . - . ID=exon-D5F88_RS11750-1;Parent=rna-D5F88_RS11750;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS11750;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_QYTI01000004.1 RefSeq gene 819 1205 . - . ID=gene-D5F88_RS01255;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=D5F88_RS01255;old_locus_tag=D5F88_01260 NZ_QYTI01000004.1 Protein Homology CDS 819 1205 . - 0 ID=cds-WP_000331497.1;Parent=gene-D5F88_RS01255;Dbxref=GenBank:WP_000331497.1;Name=WP_000331497.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002887523.1;locus_tag=D5F88_RS01255;product=50S ribosomal protein L17;protein_id=WP_000331497.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 1220 2158 . - . ID=gene-D5F88_RS01260;Name=D5F88_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01260;old_locus_tag=D5F88_01265 NZ_QYTI01000004.1 Protein Homology CDS 1220 2158 . - 0 ID=cds-WP_000568977.1;Parent=gene-D5F88_RS01260;Dbxref=GenBank:WP_000568977.1;Name=WP_000568977.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000568977.1;locus_tag=D5F88_RS01260;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_000568977.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 2208 2591 . - . ID=gene-D5F88_RS01265;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=D5F88_RS01265;old_locus_tag=D5F88_01270 NZ_QYTI01000004.1 Protein Homology CDS 2208 2591 . - 0 ID=cds-WP_001118387.1;Parent=gene-D5F88_RS01265;Dbxref=GenBank:WP_001118387.1;Name=WP_001118387.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003130556.1;locus_tag=D5F88_RS01265;product=30S ribosomal protein S11;protein_id=WP_001118387.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 2609 2974 . - . ID=gene-D5F88_RS01270;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=D5F88_RS01270;old_locus_tag=D5F88_01275 NZ_QYTI01000004.1 Protein Homology CDS 2609 2974 . - 0 ID=cds-WP_000090785.1;Parent=gene-D5F88_RS01270;Dbxref=GenBank:WP_000090785.1;Name=WP_000090785.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsM;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008809894.1;locus_tag=D5F88_RS01270;product=30S ribosomal protein S13;protein_id=WP_000090785.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 2992 3108 . - . ID=gene-D5F88_RS01275;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=D5F88_RS01275;old_locus_tag=D5F88_01280 NZ_QYTI01000004.1 Protein Homology CDS 2992 3108 . - 0 ID=cds-WP_086163178.1;Parent=gene-D5F88_RS01275;Dbxref=GenBank:WP_086163178.1;Name=WP_086163178.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmJ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013773089.1;locus_tag=D5F88_RS01275;product=50S ribosomal protein L36;protein_id=WP_086163178.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 3134 3352 . - . ID=gene-D5F88_RS01280;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=D5F88_RS01280;old_locus_tag=D5F88_01285 NZ_QYTI01000004.1 Protein Homology CDS 3134 3352 . - 0 ID=cds-WP_001040189.1;Parent=gene-D5F88_RS01280;Dbxref=GenBank:WP_001040189.1;Name=WP_001040189.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003130554.1;locus_tag=D5F88_RS01280;product=translation initiation factor IF-1;protein_id=WP_001040189.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 3468 4106 . - . ID=gene-D5F88_RS01285;Name=D5F88_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01285;old_locus_tag=D5F88_01290 NZ_QYTI01000004.1 Protein Homology CDS 3468 4106 . - 0 ID=cds-WP_001050419.1;Parent=gene-D5F88_RS01285;Dbxref=GenBank:WP_001050419.1;Name=WP_001050419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001050422.1;locus_tag=D5F88_RS01285;product=adenylate kinase;protein_id=WP_001050419.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 4201 5505 . - . ID=gene-D5F88_RS01290;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=D5F88_RS01290;old_locus_tag=D5F88_01295 NZ_QYTI01000004.1 Protein Homology CDS 4201 5505 . - 0 ID=cds-WP_016502396.1;Parent=gene-D5F88_RS01290;Dbxref=GenBank:WP_016502396.1;Name=WP_016502396.1;Ontology_term=GO:0015031,GO:0043952,GO:0016020;gbkey=CDS;gene=secY;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631723.1;locus_tag=D5F88_RS01290;product=preprotein translocase subunit SecY;protein_id=WP_016502396.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 5526 5966 . - . ID=gene-D5F88_RS01295;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=D5F88_RS01295;old_locus_tag=D5F88_01300 NZ_QYTI01000004.1 Protein Homology CDS 5526 5966 . - 0 ID=cds-WP_000766093.1;Parent=gene-D5F88_RS01295;Dbxref=GenBank:WP_000766093.1;Name=WP_000766093.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplO;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004225266.1;locus_tag=D5F88_RS01295;product=50S ribosomal protein L15;protein_id=WP_000766093.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 6091 6270 . - . ID=gene-D5F88_RS01300;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=D5F88_RS01300;old_locus_tag=D5F88_01305 NZ_QYTI01000004.1 Protein Homology CDS 6091 6270 . - 0 ID=cds-WP_000057245.1;Parent=gene-D5F88_RS01300;Dbxref=GenBank:WP_000057245.1;Name=WP_000057245.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmD;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000057245.1;locus_tag=D5F88_RS01300;product=50S ribosomal protein L30;protein_id=WP_000057245.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 6285 6779 . - . ID=gene-D5F88_RS01305;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=D5F88_RS01305;old_locus_tag=D5F88_01310 NZ_QYTI01000004.1 Protein Homology CDS 6285 6779 . - 0 ID=cds-WP_000874200.1;Parent=gene-D5F88_RS01305;Dbxref=GenBank:WP_000874200.1;Name=WP_000874200.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsE;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018376782.1;locus_tag=D5F88_RS01305;product=30S ribosomal protein S5;protein_id=WP_000874200.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 6798 7154 . - . ID=gene-D5F88_RS01310;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=D5F88_RS01310;old_locus_tag=D5F88_01315 NZ_QYTI01000004.1 Protein Homology CDS 6798 7154 . - 0 ID=cds-WP_001865622.1;Parent=gene-D5F88_RS01310;Dbxref=GenBank:WP_001865622.1;Name=WP_001865622.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplR;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018374469.1;locus_tag=D5F88_RS01310;product=50S ribosomal protein L18;protein_id=WP_001865622.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 7255 7791 . - . ID=gene-D5F88_RS01315;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=D5F88_RS01315;old_locus_tag=D5F88_01320 NZ_QYTI01000004.1 Protein Homology CDS 7255 7791 . - 0 ID=cds-WP_000086620.1;Parent=gene-D5F88_RS01315;Dbxref=GenBank:WP_000086620.1;Name=WP_000086620.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplF;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016399261.1;locus_tag=D5F88_RS01315;product=50S ribosomal protein L6;protein_id=WP_000086620.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 7901 8299 . - . ID=gene-D5F88_RS01320;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=D5F88_RS01320;old_locus_tag=D5F88_01325 NZ_QYTI01000004.1 Protein Homology CDS 7901 8299 . - 0 ID=cds-WP_000245501.1;Parent=gene-D5F88_RS01320;Dbxref=GenBank:WP_000245501.1;Name=WP_000245501.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009754342.1;locus_tag=D5F88_RS01320;product=30S ribosomal protein S8;protein_id=WP_000245501.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 8454 8639 . - . ID=gene-D5F88_RS01325;Name=D5F88_RS01325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01325;old_locus_tag=D5F88_01330 NZ_QYTI01000004.1 Protein Homology CDS 8454 8639 . - 0 ID=cds-WP_001085698.1;Parent=gene-D5F88_RS01325;Dbxref=GenBank:WP_001085698.1;Name=WP_001085698.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011245027.1;locus_tag=D5F88_RS01325;product=type Z 30S ribosomal protein S14;protein_id=WP_001085698.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 8657 9199 . - . ID=gene-D5F88_RS01330;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=D5F88_RS01330;old_locus_tag=D5F88_01335 NZ_QYTI01000004.1 Protein Homology CDS 8657 9199 . - 0 ID=cds-WP_000013545.1;Parent=gene-D5F88_RS01330;Dbxref=GenBank:WP_000013545.1;Name=WP_000013545.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018376779.1;locus_tag=D5F88_RS01330;product=50S ribosomal protein L5;protein_id=WP_000013545.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 9223 9528 . - . ID=gene-D5F88_RS01335;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=D5F88_RS01335;old_locus_tag=D5F88_01340 NZ_QYTI01000004.1 Protein Homology CDS 9223 9528 . - 0 ID=cds-WP_000497687.1;Parent=gene-D5F88_RS01335;Dbxref=GenBank:WP_000497687.1;Name=WP_000497687.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplX;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011921687.1;locus_tag=D5F88_RS01335;product=50S ribosomal protein L24;protein_id=WP_000497687.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 9608 9976 . - . ID=gene-D5F88_RS01340;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=D5F88_RS01340;old_locus_tag=D5F88_01345 NZ_QYTI01000004.1 Protein Homology CDS 9608 9976 . - 0 ID=cds-WP_000615920.1;Parent=gene-D5F88_RS01340;Dbxref=GenBank:WP_000615920.1;Name=WP_000615920.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplN;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012727667.1;locus_tag=D5F88_RS01340;product=50S ribosomal protein L14;protein_id=WP_000615920.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 10001 10261 . - . ID=gene-D5F88_RS01345;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=D5F88_RS01345;old_locus_tag=D5F88_01350 NZ_QYTI01000004.1 Protein Homology CDS 10001 10261 . - 0 ID=cds-WP_000440811.1;Parent=gene-D5F88_RS01345;Dbxref=GenBank:WP_000440811.1;Name=WP_000440811.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006738952.1;locus_tag=D5F88_RS01345;product=30S ribosomal protein S17;protein_id=WP_000440811.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 10287 10493 . - . ID=gene-D5F88_RS01350;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=D5F88_RS01350;old_locus_tag=D5F88_01355 NZ_QYTI01000004.1 Protein Homology CDS 10287 10493 . - 0 ID=cds-WP_000775731.1;Parent=gene-D5F88_RS01350;Dbxref=GenBank:WP_000775731.1;Name=WP_000775731.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006739716.1;locus_tag=D5F88_RS01350;product=50S ribosomal protein L29;protein_id=WP_000775731.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 10503 10916 . - . ID=gene-D5F88_RS01355;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=D5F88_RS01355;old_locus_tag=D5F88_01360 NZ_QYTI01000004.1 Protein Homology CDS 10503 10916 . - 0 ID=cds-WP_000960950.1;Parent=gene-D5F88_RS01355;Dbxref=GenBank:WP_000960950.1;Name=WP_000960950.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843;gbkey=CDS;gene=rplP;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003029477.1;locus_tag=D5F88_RS01355;product=50S ribosomal protein L16;protein_id=WP_000960950.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 10920 11573 . - . ID=gene-D5F88_RS01360;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=D5F88_RS01360;old_locus_tag=D5F88_01365 NZ_QYTI01000004.1 Protein Homology CDS 10920 11573 . - 0 ID=cds-WP_000529929.1;Parent=gene-D5F88_RS01360;Dbxref=GenBank:WP_000529929.1;Name=WP_000529929.1;Ontology_term=GO:0006412,GO:0003735;gbkey=CDS;gene=rpsC;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000529931.1;locus_tag=D5F88_RS01360;product=30S ribosomal protein S3;protein_id=WP_000529929.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 11586 11930 . - . ID=gene-D5F88_RS01365;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=D5F88_RS01365;old_locus_tag=D5F88_01370 NZ_QYTI01000004.1 Protein Homology CDS 11586 11930 . - 0 ID=cds-WP_000818141.1;Parent=gene-D5F88_RS01365;Dbxref=GenBank:WP_000818141.1;Name=WP_000818141.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplV;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018371349.1;locus_tag=D5F88_RS01365;product=50S ribosomal protein L22;protein_id=WP_000818141.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 11946 12224 . - . ID=gene-D5F88_RS01370;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=D5F88_RS01370;old_locus_tag=D5F88_01375 NZ_QYTI01000004.1 Protein Homology CDS 11946 12224 . - 0 ID=cds-WP_000533765.1;Parent=gene-D5F88_RS01370;Dbxref=GenBank:WP_000533765.1;Name=WP_000533765.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsS;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000533765.1;locus_tag=D5F88_RS01370;product=30S ribosomal protein S19;protein_id=WP_000533765.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 12322 13155 . - . ID=gene-D5F88_RS01375;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=D5F88_RS01375;old_locus_tag=D5F88_01380 NZ_QYTI01000004.1 Protein Homology CDS 12322 13155 . - 0 ID=cds-WP_000511737.1;Parent=gene-D5F88_RS01375;Dbxref=GenBank:WP_000511737.1;Name=WP_000511737.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0016740,GO:0015934;gbkey=CDS;gene=rplB;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA,transferase activity|0016740||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019790357.1;locus_tag=D5F88_RS01375;product=50S ribosomal protein L2;protein_id=WP_000511737.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 13173 13469 . - . ID=gene-D5F88_RS01380;Name=D5F88_RS01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01380;old_locus_tag=D5F88_01385 NZ_QYTI01000004.1 Protein Homology CDS 13173 13469 . - 0 ID=cds-WP_016502395.1;Parent=gene-D5F88_RS01380;Dbxref=GenBank:WP_016502395.1;Name=WP_016502395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006739217.1;locus_tag=D5F88_RS01380;product=50S ribosomal protein L23;protein_id=WP_016502395.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 13469 14092 . - . ID=gene-D5F88_RS01385;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=D5F88_RS01385;old_locus_tag=D5F88_01390 NZ_QYTI01000004.1 Protein Homology CDS 13469 14092 . - 0 ID=cds-WP_000024418.1;Parent=gene-D5F88_RS01385;Dbxref=GenBank:WP_000024418.1;Name=WP_000024418.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012677212.1;locus_tag=D5F88_RS01385;product=50S ribosomal protein L4;protein_id=WP_000024418.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 14116 14742 . - . ID=gene-D5F88_RS01390;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=D5F88_RS01390;old_locus_tag=D5F88_01395 NZ_QYTI01000004.1 Protein Homology CDS 14116 14742 . - 0 ID=cds-WP_000160205.1;Parent=gene-D5F88_RS01390;Dbxref=GenBank:WP_000160205.1;Name=WP_000160205.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002986659.1;locus_tag=D5F88_RS01390;product=50S ribosomal protein L3;protein_id=WP_000160205.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 14847 15155 . - . ID=gene-D5F88_RS01395;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=D5F88_RS01395;old_locus_tag=D5F88_01400 NZ_QYTI01000004.1 Protein Homology CDS 14847 15155 . - 0 ID=cds-WP_001284518.1;Parent=gene-D5F88_RS01395;Dbxref=GenBank:WP_001284518.1;Name=WP_001284518.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003046044.1;locus_tag=D5F88_RS01395;product=30S ribosomal protein S10;protein_id=WP_001284518.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 15361 16641 . - . ID=gene-D5F88_RS01400;Name=D5F88_RS01400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01400;old_locus_tag=D5F88_01405 NZ_QYTI01000004.1 Protein Homology CDS 15361 16641 . - 0 ID=cds-WP_086163177.1;Parent=gene-D5F88_RS01400;Dbxref=GenBank:WP_086163177.1;Name=WP_086163177.1;Ontology_term=GO:0055085,GO:0015297,GO:0042910,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA,xenobiotic transmembrane transporter activity|0042910||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001270709.1;locus_tag=D5F88_RS01400;product=MATE family efflux transporter;protein_id=WP_086163177.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 16746 18236 . - . ID=gene-D5F88_RS01405;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=D5F88_RS01405;old_locus_tag=D5F88_01410 NZ_QYTI01000004.1 Protein Homology CDS 16746 18236 . - 0 ID=cds-WP_016502393.1;Parent=gene-D5F88_RS01405;Dbxref=GenBank:WP_016502393.1;Name=WP_016502393.1;Ontology_term=GO:0009088,GO:0004795;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001029130.1;locus_tag=D5F88_RS01405;product=threonine synthase;protein_id=WP_016502393.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 18356 19372 . - . ID=gene-D5F88_RS01410;Name=adhP;gbkey=Gene;gene=adhP;gene_biotype=protein_coding;locus_tag=D5F88_RS01410;old_locus_tag=D5F88_01415 NZ_QYTI01000004.1 Protein Homology CDS 18356 19372 . - 0 ID=cds-WP_086163176.1;Parent=gene-D5F88_RS01410;Dbxref=GenBank:WP_086163176.1;Name=WP_086163176.1;gbkey=CDS;gene=adhP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000649198.1;locus_tag=D5F88_RS01410;product=alcohol dehydrogenase AdhP;protein_id=WP_086163176.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 19551 22193 . - . ID=gene-D5F88_RS01415;Name=adhE;gbkey=Gene;gene=adhE;gene_biotype=protein_coding;gene_synonym=adhC;locus_tag=D5F88_RS01415;old_locus_tag=D5F88_01420 NZ_QYTI01000004.1 Protein Homology CDS 19551 22193 . - 0 ID=cds-WP_000137031.1;Parent=gene-D5F88_RS01415;Dbxref=GenBank:WP_000137031.1;Name=WP_000137031.1;Ontology_term=GO:0006066,GO:0015976,GO:0004022,GO:0016620,GO:0046872;gbkey=CDS;gene=adhE;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,metal ion binding|0046872||IEA;go_process=alcohol metabolic process|0006066||IEA,carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011888528.1;locus_tag=D5F88_RS01415;product=bifunctional acetaldehyde-CoA/alcohol dehydrogenase;protein_id=WP_000137031.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 22462 24240 . - . ID=gene-D5F88_RS01420;Name=D5F88_RS01420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01420;old_locus_tag=D5F88_01425 NZ_QYTI01000004.1 Protein Homology CDS 22462 24240 . - 0 ID=cds-WP_016502391.1;Parent=gene-D5F88_RS01420;Dbxref=GenBank:WP_016502391.1;Name=WP_016502391.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001220914.1;locus_tag=D5F88_RS01420;product=acyltransferase family protein;protein_id=WP_016502391.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 24237 24617 . - . ID=gene-D5F88_RS01425;Name=D5F88_RS01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01425;old_locus_tag=D5F88_01430 NZ_QYTI01000004.1 Protein Homology CDS 24237 24617 . - 0 ID=cds-WP_000787702.1;Parent=gene-D5F88_RS01425;Dbxref=GenBank:WP_000787702.1;Name=WP_000787702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000787700.1;locus_tag=D5F88_RS01425;product=membrane protein;protein_id=WP_000787702.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 24624 25061 . - . ID=gene-D5F88_RS01430;Name=D5F88_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01430;old_locus_tag=D5F88_01435 NZ_QYTI01000004.1 Protein Homology CDS 24624 25061 . - 0 ID=cds-WP_016502390.1;Parent=gene-D5F88_RS01430;Dbxref=GenBank:WP_016502390.1;Name=WP_016502390.1;Ontology_term=GO:0006470,GO:0004725;gbkey=CDS;go_function=protein tyrosine phosphatase activity|0004725||IEA;go_process=protein dephosphorylation|0006470||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058280.1;locus_tag=D5F88_RS01430;product=low molecular weight protein-tyrosine-phosphatase;protein_id=WP_016502390.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 25213 26211 . - . ID=gene-D5F88_RS01435;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=D5F88_RS01435;old_locus_tag=D5F88_01440 NZ_QYTI01000004.1 Protein Homology CDS 25213 26211 . - 0 ID=cds-WP_086163175.1;Parent=gene-D5F88_RS01435;Dbxref=GenBank:WP_086163175.1;Name=WP_086163175.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001902090.1;locus_tag=D5F88_RS01435;product=Holliday junction branch migration DNA helicase RuvB;protein_id=WP_086163175.1;transl_table=11 NZ_QYTI01000004.1 RefSeq gene 26508 27203 . - . ID=gene-D5F88_RS01440;Name=D5F88_RS01440;end_range=27203,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01440;old_locus_tag=D5F88_01445;partial=true NZ_QYTI01000004.1 Protein Homology CDS 26508 27203 . - 0 ID=cds-WP_124773159.1;Parent=gene-D5F88_RS01440;Dbxref=GenBank:WP_124773159.1;Name=WP_124773159.1;end_range=27203,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631716.1;locus_tag=D5F88_RS01440;partial=true;product=XRE family transcriptional regulator;protein_id=WP_124773159.1;transl_table=11 ##sequence-region NZ_QYTI01000040.1 1 39918 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000040.1 RefSeq region 1 39918 . + . ID=NZ_QYTI01000040.1:1..39918;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000040.1 RefSeq pseudogene 1 230 . - . ID=gene-D5F88_RS04840;Name=D5F88_RS04840;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04840;old_locus_tag=D5F88_04845;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000040.1 Protein Homology CDS 1 230 . - 0 ID=cds-D5F88_RS04840;Parent=gene-D5F88_RS04840;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771899.1;locus_tag=D5F88_RS04840;partial=true;product=ABC transporter substrate-binding protein;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 472 1200 . - . ID=gene-D5F88_RS04850;Name=lrgB;gbkey=Gene;gene=lrgB;gene_biotype=protein_coding;locus_tag=D5F88_RS04850;old_locus_tag=D5F88_04855 NZ_QYTI01000040.1 Protein Homology CDS 472 1200 . - 0 ID=cds-WP_086163200.1;Parent=gene-D5F88_RS04850;Dbxref=GenBank:WP_086163200.1;Name=WP_086163200.1;gbkey=CDS;gene=lrgB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000421725.1;locus_tag=D5F88_RS04850;product=antiholin-like protein LrgB;protein_id=WP_086163200.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 1202 1657 . - . ID=gene-D5F88_RS04855;Name=D5F88_RS04855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04855;old_locus_tag=D5F88_04860 NZ_QYTI01000040.1 Protein Homology CDS 1202 1657 . - 0 ID=cds-WP_016480242.1;Parent=gene-D5F88_RS04855;Dbxref=GenBank:WP_016480242.1;Name=WP_016480242.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480242.1;locus_tag=D5F88_RS04855;product=CidA/LrgA family protein;protein_id=WP_016480242.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 1827 2567 . - . ID=gene-D5F88_RS04860;Name=D5F88_RS04860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04860;old_locus_tag=D5F88_04865 NZ_QYTI01000040.1 Protein Homology CDS 1827 2567 . - 0 ID=cds-WP_000697630.1;Parent=gene-D5F88_RS04860;Dbxref=GenBank:WP_000697630.1;Name=WP_000697630.1;Ontology_term=GO:0000160,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631763.1;locus_tag=D5F88_RS04860;product=LytR/AlgR family response regulator transcription factor;protein_id=WP_000697630.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 2548 4293 . - . ID=gene-D5F88_RS04865;Name=D5F88_RS04865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04865;old_locus_tag=D5F88_04870 NZ_QYTI01000040.1 Protein Homology CDS 2548 4293 . - 0 ID=cds-WP_016502442.1;Parent=gene-D5F88_RS04865;Dbxref=GenBank:WP_016502442.1;Name=WP_016502442.1;Ontology_term=GO:0000160,GO:0071555,GO:0000155,GO:0004673,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000930326.1;locus_tag=D5F88_RS04865;product=LytS/YhcK type 5TM receptor domain-containing protein;protein_id=WP_016502442.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 4320 4964 . - . ID=gene-D5F88_RS04870;Name=D5F88_RS04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04870;old_locus_tag=D5F88_04875 NZ_QYTI01000040.1 Protein Homology CDS 4320 4964 . - 0 ID=cds-WP_016480241.1;Parent=gene-D5F88_RS04870;Dbxref=GenBank:WP_016480241.1;Name=WP_016480241.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000416607.1;locus_tag=D5F88_RS04870;product=HAD family hydrolase;protein_id=WP_016480241.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 5088 5483 . - . ID=gene-D5F88_RS04875;Name=D5F88_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04875;old_locus_tag=D5F88_04880 NZ_QYTI01000040.1 Protein Homology CDS 5088 5483 . - 0 ID=cds-WP_000282447.1;Parent=gene-D5F88_RS04875;Dbxref=GenBank:WP_000282447.1;Name=WP_000282447.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000282448.1;locus_tag=D5F88_RS04875;product=single-stranded DNA-binding protein;protein_id=WP_000282447.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 5564 6280 . + . ID=gene-D5F88_RS04880;Name=D5F88_RS04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04880;old_locus_tag=D5F88_04885 NZ_QYTI01000040.1 Protein Homology CDS 5564 6280 . + 0 ID=cds-WP_016480240.1;Parent=gene-D5F88_RS04880;Dbxref=GenBank:WP_016480240.1;Name=WP_016480240.1;Ontology_term=GO:0008757;gbkey=CDS;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000186175.1;locus_tag=D5F88_RS04880;product=class I SAM-dependent methyltransferase;protein_id=WP_016480240.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 6334 6960 . - . ID=gene-D5F88_RS04885;Name=ytpR;gbkey=Gene;gene=ytpR;gene_biotype=protein_coding;locus_tag=D5F88_RS04885;old_locus_tag=D5F88_04890 NZ_QYTI01000040.1 Protein Homology CDS 6334 6960 . - 0 ID=cds-WP_016502441.1;Parent=gene-D5F88_RS04885;Dbxref=GenBank:WP_016502441.1;Name=WP_016502441.1;gbkey=CDS;gene=ytpR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646647.1;locus_tag=D5F88_RS04885;product=YtpR family tRNA-binding protein;protein_id=WP_016502441.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 6993 7316 . - . ID=gene-D5F88_RS04890;Name=D5F88_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04890;old_locus_tag=D5F88_04895 NZ_QYTI01000040.1 Protein Homology CDS 6993 7316 . - 0 ID=cds-WP_000602783.1;Parent=gene-D5F88_RS04890;Dbxref=GenBank:WP_000602783.1;Name=WP_000602783.1;Ontology_term=GO:0015035;gbkey=CDS;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000602781.1;locus_tag=D5F88_RS04890;product=thioredoxin family protein;protein_id=WP_000602783.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 7313 7597 . - . ID=gene-D5F88_RS04895;Name=D5F88_RS04895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04895;old_locus_tag=D5F88_04900 NZ_QYTI01000040.1 Protein Homology CDS 7313 7597 . - 0 ID=cds-WP_016502440.1;Parent=gene-D5F88_RS04895;Dbxref=GenBank:WP_016502440.1;Name=WP_016502440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644219.1;locus_tag=D5F88_RS04895;product=DUF4651 domain-containing protein;protein_id=WP_016502440.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 7758 7997 . + . ID=gene-D5F88_RS04900;Name=D5F88_RS04900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04900;old_locus_tag=D5F88_04905 NZ_QYTI01000040.1 Protein Homology CDS 7758 7997 . + 0 ID=cds-WP_000660180.1;Parent=gene-D5F88_RS04900;Dbxref=GenBank:WP_000660180.1;Name=WP_000660180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649272.1;locus_tag=D5F88_RS04900;product=hypothetical protein;protein_id=WP_000660180.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 8182 9249 . + . ID=gene-D5F88_RS04905;Name=pepA;gbkey=Gene;gene=pepA;gene_biotype=protein_coding;locus_tag=D5F88_RS04905;old_locus_tag=D5F88_04910 NZ_QYTI01000040.1 Protein Homology CDS 8182 9249 . + 0 ID=cds-WP_016502438.1;Parent=gene-D5F88_RS04905;Dbxref=GenBank:WP_016502438.1;Name=WP_016502438.1;gbkey=CDS;gene=pepA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001281319.1;locus_tag=D5F88_RS04905;product=glutamyl aminopeptidase;protein_id=WP_016502438.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 9319 10089 . + . ID=gene-D5F88_RS04910;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=D5F88_RS04910;old_locus_tag=D5F88_04915 NZ_QYTI01000040.1 Protein Homology CDS 9319 10089 . + 0 ID=cds-WP_016502437.1;Parent=gene-D5F88_RS04910;Dbxref=GenBank:WP_016502437.1;Name=WP_016502437.1;Ontology_term=GO:0055129,GO:0004735;gbkey=CDS;gene=proC;go_function=pyrroline-5-carboxylate reductase activity|0004735||IEA;go_process=L-proline biosynthetic process|0055129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480237.1;locus_tag=D5F88_RS04910;product=pyrroline-5-carboxylate reductase;protein_id=WP_016502437.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 10110 10775 . - . ID=gene-D5F88_RS04915;Name=D5F88_RS04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04915;old_locus_tag=D5F88_04920 NZ_QYTI01000040.1 Protein Homology CDS 10110 10775 . - 0 ID=cds-WP_016502436.1;Parent=gene-D5F88_RS04915;Dbxref=GenBank:WP_016502436.1;Name=WP_016502436.1;Ontology_term=GO:0071586,GO:0004222,GO:0070007,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,glutamic-type endopeptidase activity|0070007||IEA;go_process=CAAX-box protein processing|0071586||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000008115.1;locus_tag=D5F88_RS04915;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_016502436.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 10844 11299 . - . ID=gene-D5F88_RS04920;Name=D5F88_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04920;old_locus_tag=D5F88_04925 NZ_QYTI01000040.1 Protein Homology CDS 10844 11299 . - 0 ID=cds-WP_124749063.1;Parent=gene-D5F88_RS04920;Dbxref=GenBank:WP_124749063.1;Name=WP_124749063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000905672.1;locus_tag=D5F88_RS04920;product=hypothetical protein;protein_id=WP_124749063.1;transl_table=11 NZ_QYTI01000040.1 RefSeq pseudogene 11536 11743 . - . ID=gene-D5F88_RS04930;Name=D5F88_RS04930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS04930;old_locus_tag=D5F88_04935;pseudo=true NZ_QYTI01000040.1 Protein Homology CDS 11536 11743 . - 0 ID=cds-D5F88_RS04930;Parent=gene-D5F88_RS04930;Note=frameshifted;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000798241.1;locus_tag=D5F88_RS04930;product=helix-turn-helix transcriptional regulator;pseudo=true;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 11871 13064 . - . ID=gene-D5F88_RS04935;Name=D5F88_RS04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04935;old_locus_tag=D5F88_04940 NZ_QYTI01000040.1 Protein Homology CDS 11871 13064 . - 0 ID=cds-WP_000047534.1;Parent=gene-D5F88_RS04935;Dbxref=GenBank:WP_000047534.1;Name=WP_000047534.1;Ontology_term=GO:0006085,GO:0016310,GO:0000287,GO:0005524,GO:0008776;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,ATP binding|0005524||IEA,acetate kinase activity|0008776||IEA;go_process=acetyl-CoA biosynthetic process|0006085||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000047536.1;locus_tag=D5F88_RS04935;product=acetate kinase;protein_id=WP_000047534.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 13096 14070 . - . ID=gene-D5F88_RS04940;Name=D5F88_RS04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04940;old_locus_tag=D5F88_04945 NZ_QYTI01000040.1 Protein Homology CDS 13096 14070 . - 0 ID=cds-WP_016502433.1;Parent=gene-D5F88_RS04940;Dbxref=GenBank:WP_016502433.1;Name=WP_016502433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649274.1;locus_tag=D5F88_RS04940;product=class I SAM-dependent methyltransferase;protein_id=WP_016502433.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 14185 14556 . - . ID=gene-D5F88_RS04945;Name=comGG;gbkey=Gene;gene=comGG;gene_biotype=protein_coding;locus_tag=D5F88_RS04945;old_locus_tag=D5F88_04950 NZ_QYTI01000040.1 Protein Homology CDS 14185 14556 . - 0 ID=cds-WP_016502432.1;Parent=gene-D5F88_RS04945;Dbxref=GenBank:WP_016502432.1;Name=WP_016502432.1;gbkey=CDS;gene=comGG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000601101.1;locus_tag=D5F88_RS04945;product=competence type IV pilus minor pilin ComGG;protein_id=WP_016502432.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 14534 14956 . - . ID=gene-D5F88_RS04950;Name=comGF;gbkey=Gene;gene=comGF;gene_biotype=protein_coding;locus_tag=D5F88_RS04950;old_locus_tag=D5F88_04955 NZ_QYTI01000040.1 Protein Homology CDS 14534 14956 . - 0 ID=cds-WP_124759481.1;Parent=gene-D5F88_RS04950;Dbxref=GenBank:WP_124759481.1;Name=WP_124759481.1;gbkey=CDS;gene=comGF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647324.1;locus_tag=D5F88_RS04950;product=competence type IV pilus minor pilin ComGF;protein_id=WP_124759481.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 15095 15295 . - . ID=gene-D5F88_RS04955;Name=D5F88_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04955;old_locus_tag=D5F88_04960 NZ_QYTI01000040.1 Protein Homology CDS 15095 15295 . - 0 ID=cds-WP_124759412.1;Parent=gene-D5F88_RS04955;Dbxref=GenBank:WP_124759412.1;Name=WP_124759412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000076713.1;locus_tag=D5F88_RS04955;product=CsbD family protein;protein_id=WP_124759412.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 15455 15967 . - . ID=gene-D5F88_RS04960;Name=D5F88_RS04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04960;old_locus_tag=D5F88_04965 NZ_QYTI01000040.1 Protein Homology CDS 15455 15967 . - 0 ID=cds-WP_000634506.1;Parent=gene-D5F88_RS04960;Dbxref=GenBank:WP_000634506.1;Name=WP_000634506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000634506.1;locus_tag=D5F88_RS04960;product=PBECR4 domain-containing protein;protein_id=WP_000634506.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 16329 17543 . - . ID=gene-D5F88_RS04965;Name=D5F88_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04965;old_locus_tag=D5F88_04970 NZ_QYTI01000040.1 Protein Homology CDS 16329 17543 . - 0 ID=cds-WP_124749031.1;Parent=gene-D5F88_RS04965;Dbxref=GenBank:WP_124749031.1;Name=WP_124749031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002983477.1;locus_tag=D5F88_RS04965;product=peptidoglycan amidohydrolase family protein;protein_id=WP_124749031.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 17545 17880 . - . ID=gene-D5F88_RS04970;Name=D5F88_RS04970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04970;old_locus_tag=D5F88_04975 NZ_QYTI01000040.1 Protein Homology CDS 17545 17880 . - 0 ID=cds-WP_124758722.1;Parent=gene-D5F88_RS04970;Dbxref=GenBank:WP_124758722.1;Name=WP_124758722.1;Ontology_term=GO:0140911;gbkey=CDS;go_function=pore-forming activity|0140911||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001001959.1;locus_tag=D5F88_RS04970;product=phage holin;protein_id=WP_124758722.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 17877 18182 . - . ID=gene-D5F88_RS04975;Name=D5F88_RS04975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04975;old_locus_tag=D5F88_04980 NZ_QYTI01000040.1 Protein Homology CDS 17877 18182 . - 0 ID=cds-WP_124758723.1;Parent=gene-D5F88_RS04975;Dbxref=GenBank:WP_124758723.1;Name=WP_124758723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000215496.1;locus_tag=D5F88_RS04975;product=hypothetical protein;protein_id=WP_124758723.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 18193 18351 . - . ID=gene-D5F88_RS11715;Name=D5F88_RS11715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11715;old_locus_tag=D5F88_04985 NZ_QYTI01000040.1 Protein Homology CDS 18193 18351 . - 0 ID=cds-WP_180383654.1;Parent=gene-D5F88_RS11715;Dbxref=GenBank:WP_180383654.1;Name=WP_180383654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000222555.1;locus_tag=D5F88_RS11715;product=hypothetical protein;protein_id=WP_180383654.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 18414 18830 . - . ID=gene-D5F88_RS04980;Name=D5F88_RS04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04980;old_locus_tag=D5F88_04990 NZ_QYTI01000040.1 Protein Homology CDS 18414 18830 . - 0 ID=cds-WP_124759411.1;Parent=gene-D5F88_RS04980;Dbxref=GenBank:WP_124759411.1;Name=WP_124759411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001873936.1;locus_tag=D5F88_RS04980;product=DUF1366 domain-containing protein;protein_id=WP_124759411.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 18841 18993 . - . ID=gene-D5F88_RS11720;Name=D5F88_RS11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11720 NZ_QYTI01000040.1 Protein Homology CDS 18841 18993 . - 0 ID=cds-WP_000391486.1;Parent=gene-D5F88_RS11720;Dbxref=GenBank:WP_000391486.1;Name=WP_000391486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000391485.1;locus_tag=D5F88_RS11720;product=hypothetical protein;protein_id=WP_000391486.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 19002 22829 . - . ID=gene-D5F88_RS04985;Name=D5F88_RS04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04985;old_locus_tag=D5F88_04995 NZ_QYTI01000040.1 Protein Homology CDS 19002 22829 . - 0 ID=cds-WP_124759410.1;Parent=gene-D5F88_RS04985;Dbxref=GenBank:WP_124759410.1;Name=WP_124759410.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000206522.1;locus_tag=D5F88_RS04985;product=phage tail protein;protein_id=WP_124759410.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 22842 23684 . - . ID=gene-D5F88_RS04990;Name=D5F88_RS04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04990;old_locus_tag=D5F88_05000 NZ_QYTI01000040.1 Protein Homology CDS 22842 23684 . - 0 ID=cds-WP_000365120.1;Parent=gene-D5F88_RS04990;Dbxref=GenBank:WP_000365120.1;Name=WP_000365120.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000365120.1;locus_tag=D5F88_RS04990;product=phage tail domain-containing protein;protein_id=WP_000365120.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 23697 27923 . - . ID=gene-D5F88_RS04995;Name=D5F88_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS04995;old_locus_tag=D5F88_05005 NZ_QYTI01000040.1 Protein Homology CDS 23697 27923 . - 0 ID=cds-WP_086163572.1;Parent=gene-D5F88_RS04995;Dbxref=GenBank:WP_086163572.1;Name=WP_086163572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646851.1;locus_tag=D5F88_RS04995;product=tape measure protein;protein_id=WP_086163572.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 27942 28172 . - . ID=gene-D5F88_RS05000;Name=D5F88_RS05000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05000;old_locus_tag=D5F88_05010 NZ_QYTI01000040.1 Protein Homology CDS 27942 28172 . - 0 ID=cds-WP_000398752.1;Parent=gene-D5F88_RS05000;Dbxref=GenBank:WP_000398752.1;Name=WP_000398752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000398752.1;locus_tag=D5F88_RS05000;product=hypothetical protein;protein_id=WP_000398752.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 28247 28702 . - . ID=gene-D5F88_RS05005;Name=D5F88_RS05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05005;old_locus_tag=D5F88_05015 NZ_QYTI01000040.1 Protein Homology CDS 28247 28702 . - 0 ID=cds-WP_086163571.1;Parent=gene-D5F88_RS05005;Dbxref=GenBank:WP_086163571.1;Name=WP_086163571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054868.1;locus_tag=D5F88_RS05005;product=tail assembly chaperone;protein_id=WP_086163571.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 28751 29383 . - . ID=gene-D5F88_RS05010;Name=D5F88_RS05010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05010;old_locus_tag=D5F88_05020 NZ_QYTI01000040.1 Protein Homology CDS 28751 29383 . - 0 ID=cds-WP_086163570.1;Parent=gene-D5F88_RS05010;Dbxref=GenBank:WP_086163570.1;Name=WP_086163570.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000450517.1;locus_tag=D5F88_RS05010;product=phage major tail protein%2C TP901-1 family;protein_id=WP_086163570.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 29395 29754 . - . ID=gene-D5F88_RS05015;Name=D5F88_RS05015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05015;old_locus_tag=D5F88_05025 NZ_QYTI01000040.1 Protein Homology CDS 29395 29754 . - 0 ID=cds-WP_000386634.1;Parent=gene-D5F88_RS05015;Dbxref=GenBank:WP_000386634.1;Name=WP_000386634.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000640604.1;locus_tag=D5F88_RS05015;product=hypothetical protein;protein_id=WP_000386634.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 29758 30102 . - . ID=gene-D5F88_RS05020;Name=D5F88_RS05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05020;old_locus_tag=D5F88_05030 NZ_QYTI01000040.1 Protein Homology CDS 29758 30102 . - 0 ID=cds-WP_086163569.1;Parent=gene-D5F88_RS05020;Dbxref=GenBank:WP_086163569.1;Name=WP_086163569.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000053327.1;locus_tag=D5F88_RS05020;product=HK97-gp10 family putative phage morphogenesis protein;protein_id=WP_086163569.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 30099 30377 . - . ID=gene-D5F88_RS05025;Name=D5F88_RS05025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05025;old_locus_tag=D5F88_05035 NZ_QYTI01000040.1 Protein Homology CDS 30099 30377 . - 0 ID=cds-WP_086163568.1;Parent=gene-D5F88_RS05025;Dbxref=GenBank:WP_086163568.1;Name=WP_086163568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054872.1;locus_tag=D5F88_RS05025;product=hypothetical protein;protein_id=WP_086163568.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 30388 30744 . - . ID=gene-D5F88_RS05030;Name=D5F88_RS05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05030;old_locus_tag=D5F88_05040 NZ_QYTI01000040.1 Protein Homology CDS 30388 30744 . - 0 ID=cds-WP_002988776.1;Parent=gene-D5F88_RS05030;Dbxref=GenBank:WP_002988776.1;Name=WP_002988776.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002988776.1;locus_tag=D5F88_RS05030;product=phage head-tail connector protein;protein_id=WP_002988776.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 30756 31643 . - . ID=gene-D5F88_RS05035;Name=D5F88_RS05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05035;old_locus_tag=D5F88_05045 NZ_QYTI01000040.1 Protein Homology CDS 30756 31643 . - 0 ID=cds-WP_124759407.1;Parent=gene-D5F88_RS05035;Dbxref=GenBank:WP_124759407.1;Name=WP_124759407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002988771.1;locus_tag=D5F88_RS05035;product=phage major capsid protein;protein_id=WP_124759407.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 31656 32225 . - . ID=gene-D5F88_RS05040;Name=D5F88_RS05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05040;old_locus_tag=D5F88_05050 NZ_QYTI01000040.1 Protein Homology CDS 31656 32225 . - 0 ID=cds-WP_002983425.1;Parent=gene-D5F88_RS05040;Dbxref=GenBank:WP_002983425.1;Name=WP_002983425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000797011.1;locus_tag=D5F88_RS05040;product=DUF4355 domain-containing protein;protein_id=WP_002983425.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 32381 32647 . - . ID=gene-D5F88_RS05045;Name=D5F88_RS05045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05045;old_locus_tag=D5F88_05055 NZ_QYTI01000040.1 Protein Homology CDS 32381 32647 . - 0 ID=cds-WP_124759406.1;Parent=gene-D5F88_RS05045;Dbxref=GenBank:WP_124759406.1;Name=WP_124759406.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054745.1;locus_tag=D5F88_RS05045;product=hypothetical protein;protein_id=WP_124759406.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 32650 32838 . - . ID=gene-D5F88_RS05050;Name=D5F88_RS05050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05050;old_locus_tag=D5F88_05060 NZ_QYTI01000040.1 Protein Homology CDS 32650 32838 . - 0 ID=cds-WP_002983423.1;Parent=gene-D5F88_RS05050;Dbxref=GenBank:WP_002983423.1;Name=WP_002983423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054876.1;locus_tag=D5F88_RS05050;product=hypothetical protein;protein_id=WP_002983423.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 32866 34314 . - . ID=gene-D5F88_RS05055;Name=D5F88_RS05055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05055;old_locus_tag=D5F88_05065 NZ_QYTI01000040.1 Protein Homology CDS 32866 34314 . - 0 ID=cds-WP_124759417.1;Parent=gene-D5F88_RS05055;Dbxref=GenBank:WP_124759417.1;Name=WP_124759417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054877.1;locus_tag=D5F88_RS05055;product=CdiA C-terminal domain-containing protein;protein_id=WP_124759417.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 34274 35806 . - . ID=gene-D5F88_RS05060;Name=D5F88_RS05060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05060;old_locus_tag=D5F88_05070 NZ_QYTI01000040.1 Protein Homology CDS 34274 35806 . - 0 ID=cds-WP_124759405.1;Parent=gene-D5F88_RS05060;Dbxref=GenBank:WP_124759405.1;Name=WP_124759405.1;Ontology_term=GO:0051027,GO:0005198,GO:0046798;gbkey=CDS;go_component=viral portal complex|0046798||IEA;go_function=structural molecule activity|0005198||IEA;go_process=DNA transport|0051027||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012560651.1;locus_tag=D5F88_RS05060;product=phage portal protein;protein_id=WP_124759405.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 35821 37098 . - . ID=gene-D5F88_RS05065;Name=D5F88_RS05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05065;old_locus_tag=D5F88_05075 NZ_QYTI01000040.1 Protein Homology CDS 35821 37098 . - 0 ID=cds-WP_086163564.1;Parent=gene-D5F88_RS05065;Dbxref=GenBank:WP_086163564.1;Name=WP_086163564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054879.1;locus_tag=D5F88_RS05065;product=PBSX family phage terminase large subunit;protein_id=WP_086163564.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 37088 37504 . - . ID=gene-D5F88_RS05070;Name=D5F88_RS05070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05070;old_locus_tag=D5F88_05080 NZ_QYTI01000040.1 Protein Homology CDS 37088 37504 . - 0 ID=cds-WP_086163563.1;Parent=gene-D5F88_RS05070;Dbxref=GenBank:WP_086163563.1;Name=WP_086163563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006907986.1;locus_tag=D5F88_RS05070;product=hypothetical protein;protein_id=WP_086163563.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 37480 38067 . - . ID=gene-D5F88_RS11815;Name=D5F88_RS11815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11815 NZ_QYTI01000040.1 Protein Homology CDS 37480 38067 . - 0 ID=cds-WP_260424972.1;Parent=gene-D5F88_RS11815;Dbxref=GenBank:WP_260424972.1;Name=WP_260424972.1;Ontology_term=GO:0004518;gbkey=CDS;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: protein motif:HMM:NF013691.6;locus_tag=D5F88_RS11815;product=GIY-YIG nuclease family protein;protein_id=WP_260424972.1;transl_table=11 NZ_QYTI01000040.1 RefSeq pseudogene 38059 38139 . - . ID=gene-D5F88_RS05075;Name=D5F88_RS05075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05075;old_locus_tag=D5F88_05085;partial=true;pseudo=true;start_range=.,38059 NZ_QYTI01000040.1 Protein Homology CDS 38059 38139 . - 0 ID=cds-D5F88_RS05075;Parent=gene-D5F88_RS05075;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000863702.1;locus_tag=D5F88_RS05075;partial=true;product=terminase small subunit;pseudo=true;start_range=.,38059;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 38164 38925 . - . ID=gene-D5F88_RS05080;Name=D5F88_RS05080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05080;old_locus_tag=D5F88_05090 NZ_QYTI01000040.1 Protein Homology CDS 38164 38925 . - 0 ID=cds-WP_180383581.1;Parent=gene-D5F88_RS05080;Dbxref=GenBank:WP_180383581.1;Name=WP_180383581.1;Ontology_term=GO:0007165,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: protein motif:HMM:NF025056.6;locus_tag=D5F88_RS05080;product=toll/interleukin-1 receptor domain-containing protein;protein_id=WP_180383581.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 39104 39517 . - . ID=gene-D5F88_RS05085;Name=D5F88_RS05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05085;old_locus_tag=D5F88_05095 NZ_QYTI01000040.1 Protein Homology CDS 39104 39517 . - 0 ID=cds-WP_124759416.1;Parent=gene-D5F88_RS05085;Dbxref=GenBank:WP_124759416.1;Name=WP_124759416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000041038.1;locus_tag=D5F88_RS05085;product=transcriptional regulator;protein_id=WP_124759416.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 39520 39789 . - . ID=gene-D5F88_RS05090;Name=D5F88_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05090;old_locus_tag=D5F88_05100 NZ_QYTI01000040.1 Protein Homology CDS 39520 39789 . - 0 ID=cds-WP_185690888.1;Parent=gene-D5F88_RS05090;Dbxref=GenBank:WP_185690888.1;Name=WP_185690888.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647862.1;locus_tag=D5F88_RS05090;product=hypothetical protein;protein_id=WP_185690888.1;transl_table=11 NZ_QYTI01000040.1 RefSeq gene 39789 39918 . - . ID=gene-D5F88_RS05095;Name=D5F88_RS05095;end_range=39918,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05095;old_locus_tag=D5F88_05105;partial=true NZ_QYTI01000040.1 Protein Homology CDS 39789 39918 . - 1 ID=cds-WP_260424973.1;Parent=gene-D5F88_RS05095;Dbxref=GenBank:WP_260424973.1;Name=WP_260424973.1;end_range=39918,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054815.1;locus_tag=D5F88_RS05095;partial=true;product=YopX family protein;protein_id=WP_260424973.1;transl_table=11 ##sequence-region NZ_QYTI01000041.1 1 1101 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000041.1 RefSeq region 1 1101 . + . ID=NZ_QYTI01000041.1:1..1101;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000041.1 RefSeq gene 1 870 . - . ID=gene-D5F88_RS05100;Name=D5F88_RS05100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05100;old_locus_tag=D5F88_05110;partial=true;start_range=.,1 NZ_QYTI01000041.1 Protein Homology CDS 1 870 . - 0 ID=cds-WP_185696283.1;Parent=gene-D5F88_RS05100;Dbxref=GenBank:WP_185696283.1;Name=WP_185696283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000036699.1;locus_tag=D5F88_RS05100;partial=true;product=DAK2 domain-containing protein;protein_id=WP_185696283.1;start_range=.,1;transl_table=11 NZ_QYTI01000041.1 RefSeq gene 870 1101 . - . ID=gene-D5F88_RS05105;Name=D5F88_RS05105;end_range=1101,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05105;old_locus_tag=D5F88_05115;partial=true NZ_QYTI01000041.1 Protein Homology CDS 870 1101 . - 1 ID=cds-WP_124773269.1;Parent=gene-D5F88_RS05105;Dbxref=GenBank:WP_124773269.1;Name=WP_124773269.1;end_range=1101,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018365170.1;locus_tag=D5F88_RS05105;partial=true;product=Asp23/Gls24 family envelope stress response protein;protein_id=WP_124773269.1;transl_table=11 ##sequence-region NZ_QYTI01000042.1 1 1191 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000042.1 RefSeq region 1 1191 . + . ID=NZ_QYTI01000042.1:1..1191;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000042.1 RefSeq gene 1 812 . + . ID=gene-D5F88_RS05110;Name=D5F88_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05110;old_locus_tag=D5F88_05120;partial=true;start_range=.,1 NZ_QYTI01000042.1 Protein Homology CDS 1 812 . + 2 ID=cds-WP_124773273.1;Parent=gene-D5F88_RS05110;Dbxref=GenBank:WP_124773273.1;Name=WP_124773273.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644046.1;locus_tag=D5F88_RS05110;partial=true;product=primase alpha helix C-terminal domain-containing protein;protein_id=WP_124773273.1;start_range=.,1;transl_table=11 NZ_QYTI01000042.1 RefSeq pseudogene 872 1191 . + . ID=gene-D5F88_RS05115;Name=D5F88_RS05115;end_range=1191,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05115;old_locus_tag=D5F88_05125;partial=true;pseudo=true NZ_QYTI01000042.1 Protein Homology CDS 872 1191 . + 0 ID=cds-D5F88_RS05115;Parent=gene-D5F88_RS05115;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=1191,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644047.1;locus_tag=D5F88_RS05115;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000043.1 1 845 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000043.1 RefSeq region 1 845 . + . ID=NZ_QYTI01000043.1:1..845;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000043.1 RefSeq gene 1 845 . + . ID=gene-D5F88_RS05120;Name=purD;end_range=845,.;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=D5F88_RS05120;old_locus_tag=D5F88_05130;partial=true;start_range=.,1 NZ_QYTI01000043.1 Protein Homology CDS 1 845 . + 1 ID=cds-WP_124773275.1;Parent=gene-D5F88_RS05120;Dbxref=GenBank:WP_124773275.1;Name=WP_124773275.1;Ontology_term=GO:0009113,GO:0004637;end_range=845,.;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058278.1;locus_tag=D5F88_RS05120;partial=true;product=phosphoribosylamine--glycine ligase;protein_id=WP_124773275.1;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000044.1 1 729 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000044.1 RefSeq region 1 729 . + . ID=NZ_QYTI01000044.1:1..729;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000044.1 RefSeq gene 37 729 . + . ID=gene-D5F88_RS05125;Name=D5F88_RS05125;end_range=729,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05125;old_locus_tag=D5F88_05135;partial=true NZ_QYTI01000044.1 Protein Homology CDS 37 729 . + 0 ID=cds-WP_375804120.1;Parent=gene-D5F88_RS05125;Dbxref=GenBank:WP_375804120.1;Name=WP_375804120.1;end_range=729,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000450421.1;locus_tag=D5F88_RS05125;partial=true;product=peptidase M42;protein_id=WP_375804120.1;transl_table=11 ##sequence-region NZ_QYTI01000045.1 1 1272 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000045.1 RefSeq region 1 1272 . + . ID=NZ_QYTI01000045.1:1..1272;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000045.1 RefSeq pseudogene 1 322 . - . ID=gene-D5F88_RS05130;Name=D5F88_RS05130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05130;old_locus_tag=D5F88_05140;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000045.1 Protein Homology CDS 1 322 . - 0 ID=cds-D5F88_RS05130;Parent=gene-D5F88_RS05130;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632306.1;locus_tag=D5F88_RS05130;partial=true;product=sensor histidine kinase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000045.1 RefSeq pseudogene 459 1272 . - . ID=gene-D5F88_RS05135;Name=D5F88_RS05135;end_range=1272,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05135;old_locus_tag=D5F88_05145;partial=true;pseudo=true NZ_QYTI01000045.1 Protein Homology CDS 459 1272 . - 1 ID=cds-D5F88_RS05135;Parent=gene-D5F88_RS05135;Note=internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;end_range=1272,.;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000841956.1;locus_tag=D5F88_RS05135;partial=true;product=PTS system mannose/fructose/sorbose family transporter subunit IID;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000046.1 1 1454 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000046.1 RefSeq region 1 1454 . + . ID=NZ_QYTI01000046.1:1..1454;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000046.1 RefSeq gene 1 205 . - . ID=gene-D5F88_RS05140;Name=D5F88_RS05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05140;old_locus_tag=D5F88_05150;partial=true;start_range=.,1 NZ_QYTI01000046.1 Protein Homology CDS 1 205 . - 0 ID=cds-WP_142358557.1;Parent=gene-D5F88_RS05140;Dbxref=GenBank:WP_142358557.1;Name=WP_142358557.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS05140;partial=true;product=transposase;protein_id=WP_142358557.1;start_range=.,1;transl_table=11 NZ_QYTI01000046.1 RefSeq gene 296 862 . + . ID=gene-D5F88_RS05145;Name=D5F88_RS05145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05145;old_locus_tag=D5F88_05155 NZ_QYTI01000046.1 Protein Homology CDS 296 862 . + 0 ID=cds-WP_260424974.1;Parent=gene-D5F88_RS05145;Dbxref=GenBank:WP_260424974.1;Name=WP_260424974.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025645.6;locus_tag=D5F88_RS05145;product=DUF4368 domain-containing protein;protein_id=WP_260424974.1;transl_table=11 NZ_QYTI01000046.1 RefSeq gene 863 1129 . + . ID=gene-D5F88_RS05150;Name=D5F88_RS05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05150;old_locus_tag=D5F88_05160 NZ_QYTI01000046.1 Protein Homology CDS 863 1129 . + 0 ID=cds-WP_260424975.1;Parent=gene-D5F88_RS05150;Dbxref=GenBank:WP_260424975.1;Name=WP_260424975.1;Ontology_term=GO:0006310,GO:0015074,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: protein motif:HMM:NF012464.6;locus_tag=D5F88_RS05150;product=recombinase family protein;protein_id=WP_260424975.1;transl_table=11 NZ_QYTI01000046.1 RefSeq gene 1143 1454 . - . ID=gene-D5F88_RS05155;Name=D5F88_RS05155;end_range=1454,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05155;old_locus_tag=D5F88_05165;partial=true NZ_QYTI01000046.1 Protein Homology CDS 1143 1454 . - 0 ID=cds-WP_142997439.1;Parent=gene-D5F88_RS05155;Dbxref=GenBank:WP_142997439.1;Name=WP_142997439.1;Ontology_term=GO:0015074;end_range=1454,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS05155;partial=true;product=integrase core domain-containing protein;protein_id=WP_142997439.1;transl_table=11 ##sequence-region NZ_QYTI01000047.1 1 109914 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000047.1 RefSeq region 1 109914 . + . ID=NZ_QYTI01000047.1:1..109914;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000047.1 RefSeq pseudogene 1 455 . + . ID=gene-D5F88_RS11910;Name=D5F88_RS11910;end_range=455,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11910;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000047.1 Protein Homology CDS 1 455 . + 2 ID=cds-D5F88_RS11910;Parent=gene-D5F88_RS11910;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=455,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647983.1;locus_tag=D5F88_RS11910;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000047.1 RefSeq pseudogene 483 941 . + . ID=gene-D5F88_RS05160;Name=D5F88_RS05160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05160;old_locus_tag=D5F88_05170;partial=true;pseudo=true;start_range=.,483 NZ_QYTI01000047.1 Protein Homology CDS 483 941 . + 0 ID=cds-D5F88_RS05160;Parent=gene-D5F88_RS05160;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647983.1;locus_tag=D5F88_RS05160;partial=true;product=hypothetical protein;pseudo=true;start_range=.,483;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 1350 2249 . + . ID=gene-D5F88_RS05165;Name=D5F88_RS05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05165;old_locus_tag=D5F88_05175 NZ_QYTI01000047.1 Protein Homology CDS 1350 2249 . + 0 ID=cds-WP_000174555.1;Parent=gene-D5F88_RS05165;Dbxref=GenBank:WP_000174555.1;Name=WP_000174555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000174555.1;locus_tag=D5F88_RS05165;product=prenyltransferase;protein_id=WP_000174555.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 2262 3470 . + . ID=gene-D5F88_RS05170;Name=D5F88_RS05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05170;old_locus_tag=D5F88_05180 NZ_QYTI01000047.1 Protein Homology CDS 2262 3470 . + 0 ID=cds-WP_000659003.1;Parent=gene-D5F88_RS05170;Dbxref=GenBank:WP_000659003.1;Name=WP_000659003.1;Ontology_term=GO:0006116,GO:0003954;gbkey=CDS;go_function=NADH dehydrogenase activity|0003954||IEA;go_process=obsolete NADH oxidation|0006116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000659000.1;locus_tag=D5F88_RS05170;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_000659003.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 3573 5000 . + . ID=gene-D5F88_RS05175;Name=D5F88_RS05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05175;old_locus_tag=D5F88_05185 NZ_QYTI01000047.1 Protein Homology CDS 3573 5000 . + 0 ID=cds-WP_086163481.1;Parent=gene-D5F88_RS05175;Dbxref=GenBank:WP_086163481.1;Name=WP_086163481.1;Ontology_term=GO:0009055,GO:0046872,GO:0016020,GO:0070069;gbkey=CDS;go_component=membrane|0016020||IEA,cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632249.1;locus_tag=D5F88_RS05175;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_086163481.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 5001 6020 . + . ID=gene-D5F88_RS05180;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=D5F88_RS05180;old_locus_tag=D5F88_05190 NZ_QYTI01000047.1 Protein Homology CDS 5001 6020 . + 0 ID=cds-WP_001275292.1;Parent=gene-D5F88_RS05180;Dbxref=GenBank:WP_001275292.1;Name=WP_001275292.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydB;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001275291.1;locus_tag=D5F88_RS05180;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_001275292.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 6020 7738 . + . ID=gene-D5F88_RS05185;Name=cydD;gbkey=Gene;gene=cydD;gene_biotype=protein_coding;locus_tag=D5F88_RS05185;old_locus_tag=D5F88_05195 NZ_QYTI01000047.1 Protein Homology CDS 6020 7738 . + 0 ID=cds-WP_000884538.1;Parent=gene-D5F88_RS05185;Dbxref=GenBank:WP_000884538.1;Name=WP_000884538.1;Ontology_term=GO:0033228,GO:0045454,GO:0005524,GO:0033230,GO:0050456,GO:0016020,GO:0055051;gbkey=CDS;gene=cydD;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex%2C integrated substrate binding|0055051||IEA;go_function=ATP binding|0005524||IEA,ABC-type cysteine transporter activity|0033230||IEA,L-cystine reductase (NADH) activity|0050456||IEA;go_process=cysteine export across plasma membrane|0033228||IEA,cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632247.1;locus_tag=D5F88_RS05185;product=thiol reductant ABC exporter subunit CydD;protein_id=WP_000884538.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 7731 9479 . + . ID=gene-D5F88_RS05190;Name=cydC;gbkey=Gene;gene=cydC;gene_biotype=protein_coding;locus_tag=D5F88_RS05190;old_locus_tag=D5F88_05200 NZ_QYTI01000047.1 Protein Homology CDS 7731 9479 . + 0 ID=cds-WP_000472836.1;Parent=gene-D5F88_RS05190;Dbxref=GenBank:WP_000472836.1;Name=WP_000472836.1;Ontology_term=GO:0033228,GO:0045454,GO:0005524,GO:0033230,GO:0050456,GO:0016020,GO:0055051;gbkey=CDS;gene=cydC;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex%2C integrated substrate binding|0055051||IEA;go_function=ATP binding|0005524||IEA,ABC-type cysteine transporter activity|0033230||IEA,L-cystine reductase (NADH) activity|0050456||IEA;go_process=cysteine export across plasma membrane|0033228||IEA,cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000472828.1;locus_tag=D5F88_RS05190;product=thiol reductant ABC exporter subunit CydC;protein_id=WP_000472836.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 9564 10544 . - . ID=gene-D5F88_RS05195;Name=D5F88_RS05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05195;old_locus_tag=D5F88_05205 NZ_QYTI01000047.1 Protein Homology CDS 9564 10544 . - 0 ID=cds-WP_124759052.1;Parent=gene-D5F88_RS05195;Dbxref=GenBank:WP_124759052.1;Name=WP_124759052.1;Ontology_term=GO:0008299,GO:0004659,GO:0046872;gbkey=CDS;go_function=prenyltransferase activity|0004659||IEA,metal ion binding|0046872||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481182.1;locus_tag=D5F88_RS05195;product=polyprenyl synthetase family protein;protein_id=WP_124759052.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 10590 10949 . - . ID=gene-D5F88_RS05200;Name=D5F88_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05200;old_locus_tag=D5F88_05210 NZ_QYTI01000047.1 Protein Homology CDS 10590 10949 . - 0 ID=cds-WP_124773279.1;Parent=gene-D5F88_RS05200;Dbxref=GenBank:WP_124773279.1;Name=WP_124773279.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000771945.1;locus_tag=D5F88_RS05200;product=hypothetical protein;protein_id=WP_124773279.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 10953 13238 . - . ID=gene-D5F88_RS05205;Name=D5F88_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05205;old_locus_tag=D5F88_05215 NZ_QYTI01000047.1 Protein Homology CDS 10953 13238 . - 0 ID=cds-WP_016503188.1;Parent=gene-D5F88_RS05205;Dbxref=GenBank:WP_016503188.1;Name=WP_016503188.1;Ontology_term=GO:0006508,GO:0008239;gbkey=CDS;go_function=dipeptidyl-peptidase activity|0008239||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001270186.1;locus_tag=D5F88_RS05205;product=Xaa-Pro dipeptidyl-peptidase;protein_id=WP_016503188.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 13262 13921 . - . ID=gene-D5F88_RS05210;Name=D5F88_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05210;old_locus_tag=D5F88_05220 NZ_QYTI01000047.1 Protein Homology CDS 13262 13921 . - 0 ID=cds-WP_001016380.1;Parent=gene-D5F88_RS05210;Dbxref=GenBank:WP_001016380.1;Name=WP_001016380.1;Ontology_term=GO:0003677,GO:0030552;gbkey=CDS;go_function=DNA binding|0003677||IEA,cAMP binding|0030552||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646447.1;locus_tag=D5F88_RS05210;product=Crp/Fnr family transcriptional regulator;protein_id=WP_001016380.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 14077 15279 . + . ID=gene-D5F88_RS05215;Name=D5F88_RS05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05215;old_locus_tag=D5F88_05225 NZ_QYTI01000047.1 Protein Homology CDS 14077 15279 . + 0 ID=cds-WP_000389617.1;Parent=gene-D5F88_RS05215;Dbxref=GenBank:WP_000389617.1;Name=WP_000389617.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000389619.1;locus_tag=D5F88_RS05215;product=MFS transporter;protein_id=WP_000389617.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 15297 15749 . + . ID=gene-D5F88_RS05220;Name=D5F88_RS05220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05220;old_locus_tag=D5F88_05230 NZ_QYTI01000047.1 Protein Homology CDS 15297 15749 . + 0 ID=cds-WP_000192462.1;Parent=gene-D5F88_RS05220;Dbxref=GenBank:WP_000192462.1;Name=WP_000192462.1;Ontology_term=GO:0050896,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=response to stimulus|0050896||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645875.1;locus_tag=D5F88_RS05220;product=universal stress protein;protein_id=WP_000192462.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 15918 16766 . + . ID=gene-D5F88_RS05225;Name=gla;gbkey=Gene;gene=gla;gene_biotype=protein_coding;locus_tag=D5F88_RS05225;old_locus_tag=D5F88_05235 NZ_QYTI01000047.1 Protein Homology CDS 15918 16766 . + 0 ID=cds-WP_000570241.1;Parent=gene-D5F88_RS05225;Dbxref=GenBank:WP_000570241.1;Name=WP_000570241.1;Ontology_term=GO:0006071,GO:0015267;gbkey=CDS;gene=gla;go_function=channel activity|0015267||IEA;go_process=glycerol metabolic process|0006071||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000570237.1;locus_tag=D5F88_RS05225;product=aquaglyceroporin Gla;protein_id=WP_000570241.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 16844 17740 . - . ID=gene-D5F88_RS05230;Name=D5F88_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05230;old_locus_tag=D5F88_05240 NZ_QYTI01000047.1 Protein Homology CDS 16844 17740 . - 0 ID=cds-WP_001006192.1;Parent=gene-D5F88_RS05230;Dbxref=GenBank:WP_001006192.1;Name=WP_001006192.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768349.1;locus_tag=D5F88_RS05230;product=sulfite exporter TauE/SafE family protein;protein_id=WP_001006192.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 17865 18620 . + . ID=gene-D5F88_RS05235;Name=D5F88_RS05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05235;old_locus_tag=D5F88_05245 NZ_QYTI01000047.1 Protein Homology CDS 17865 18620 . + 0 ID=cds-WP_016481180.1;Parent=gene-D5F88_RS05235;Dbxref=GenBank:WP_016481180.1;Name=WP_016481180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000171837.1;locus_tag=D5F88_RS05235;product=CppA family protein;protein_id=WP_016481180.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 18617 19546 . + . ID=gene-D5F88_RS05240;Name=D5F88_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05240;old_locus_tag=D5F88_05250 NZ_QYTI01000047.1 Protein Homology CDS 18617 19546 . + 0 ID=cds-WP_016503185.1;Parent=gene-D5F88_RS05240;Dbxref=GenBank:WP_016503185.1;Name=WP_016503185.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000598173.1;locus_tag=D5F88_RS05240;product=serine hydrolase domain-containing protein;protein_id=WP_016503185.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 19581 19955 . - . ID=gene-D5F88_RS05245;Name=D5F88_RS05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05245;old_locus_tag=D5F88_05255 NZ_QYTI01000047.1 Protein Homology CDS 19581 19955 . - 0 ID=cds-WP_000931879.1;Parent=gene-D5F88_RS05245;Dbxref=GenBank:WP_000931879.1;Name=WP_000931879.1;Ontology_term=GO:0010181,GO:0016491;gbkey=CDS;go_function=FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000931877.1;locus_tag=D5F88_RS05245;product=pyridoxamine 5'-phosphate oxidase family protein;protein_id=WP_000931879.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 20056 22368 . - . ID=gene-D5F88_RS05250;Name=pflB;gbkey=Gene;gene=pflB;gene_biotype=protein_coding;locus_tag=D5F88_RS05250;old_locus_tag=D5F88_05260 NZ_QYTI01000047.1 Protein Homology CDS 20056 22368 . - 0 ID=cds-WP_016503184.1;Parent=gene-D5F88_RS05250;Dbxref=GenBank:WP_016503184.1;Name=WP_016503184.1;Ontology_term=GO:0005975,GO:0008861,GO:0005737;gbkey=CDS;gene=pflB;go_component=cytoplasm|0005737||IEA;go_function=formate C-acetyltransferase activity|0008861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503184.1;locus_tag=D5F88_RS05250;product=formate C-acetyltransferase;protein_id=WP_016503184.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 22553 23647 . + . ID=gene-D5F88_RS05255;Name=dinB;gbkey=Gene;gene=dinB;gene_biotype=protein_coding;locus_tag=D5F88_RS05255;old_locus_tag=D5F88_05265 NZ_QYTI01000047.1 Protein Homology CDS 22553 23647 . + 0 ID=cds-WP_000904560.1;Parent=gene-D5F88_RS05255;Dbxref=GenBank:WP_000904560.1;Name=WP_000904560.1;Ontology_term=GO:0006281,GO:0003684,GO:0003887;gbkey=CDS;gene=dinB;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000904560.1;locus_tag=D5F88_RS05255;product=DNA polymerase IV;protein_id=WP_000904560.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 23718 24200 . - . ID=gene-D5F88_RS05260;Name=D5F88_RS05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05260;old_locus_tag=D5F88_05270 NZ_QYTI01000047.1 Protein Homology CDS 23718 24200 . - 0 ID=cds-WP_000255475.1;Parent=gene-D5F88_RS05260;Dbxref=GenBank:WP_000255475.1;Name=WP_000255475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000255479.1;locus_tag=D5F88_RS05260;product=hypothetical protein;protein_id=WP_000255475.1;transl_table=11 NZ_QYTI01000047.1 RefSeq pseudogene 24532 26734 . - . ID=gene-D5F88_RS05265;Name=recD2;gbkey=Gene;gene=recD2;gene_biotype=pseudogene;locus_tag=D5F88_RS05265;old_locus_tag=D5F88_05275;partial=true;pseudo=true;start_range=.,24532 NZ_QYTI01000047.1 Protein Homology CDS 24532 26734 . - 0 ID=cds-D5F88_RS05265;Parent=gene-D5F88_RS05265;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006281,GO:0003677,GO:0043139;gbkey=CDS;gene=recD2;go_function=DNA binding|0003677||IEA,5'-3' DNA helicase activity|0043139||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019804593.1;locus_tag=D5F88_RS05265;partial=true;product=SF1B family DNA helicase RecD2;pseudo=true;start_range=.,24532;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 26863 27456 . - . ID=gene-D5F88_RS05270;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=D5F88_RS05270;old_locus_tag=D5F88_05280 NZ_QYTI01000047.1 Protein Homology CDS 26863 27456 . - 0 ID=cds-WP_000657514.1;Parent=gene-D5F88_RS05270;Dbxref=GenBank:WP_000657514.1;Name=WP_000657514.1;Ontology_term=GO:0006465,GO:0009306,GO:0004252,GO:0016020;gbkey=CDS;gene=lepB;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000657511.1;locus_tag=D5F88_RS05270;product=signal peptidase I;protein_id=WP_000657514.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 27472 28365 . - . ID=gene-D5F88_RS05275;Name=rnhC;gbkey=Gene;gene=rnhC;gene_biotype=protein_coding;locus_tag=D5F88_RS05275;old_locus_tag=D5F88_05285 NZ_QYTI01000047.1 Protein Homology CDS 27472 28365 . - 0 ID=cds-WP_016503181.1;Parent=gene-D5F88_RS05275;Dbxref=GenBank:WP_016503181.1;Name=WP_016503181.1;Ontology_term=GO:0006401,GO:0004523,GO:0005737;gbkey=CDS;gene=rnhC;go_component=cytoplasm|0005737||IEA;go_function=RNA-DNA hybrid ribonuclease activity|0004523||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771143.1;locus_tag=D5F88_RS05275;product=ribonuclease HIII;protein_id=WP_016503181.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 28476 28787 . + . ID=gene-D5F88_RS05280;Name=zapA;gbkey=Gene;gene=zapA;gene_biotype=protein_coding;locus_tag=D5F88_RS05280;old_locus_tag=D5F88_05290 NZ_QYTI01000047.1 Protein Homology CDS 28476 28787 . + 0 ID=cds-WP_000448289.1;Parent=gene-D5F88_RS05280;Dbxref=GenBank:WP_000448289.1;Name=WP_000448289.1;Ontology_term=GO:0051301;gbkey=CDS;gene=zapA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000448289.1;locus_tag=D5F88_RS05280;product=cell division protein ZapA;protein_id=WP_000448289.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 28790 29332 . + . ID=gene-D5F88_RS05285;Name=D5F88_RS05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05285;old_locus_tag=D5F88_05295 NZ_QYTI01000047.1 Protein Homology CDS 28790 29332 . + 0 ID=cds-WP_000949956.1;Parent=gene-D5F88_RS05285;Dbxref=GenBank:WP_000949956.1;Name=WP_000949956.1;Ontology_term=GO:0009403;gbkey=CDS;go_process=toxin biosynthetic process|0009403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000949955.1;locus_tag=D5F88_RS05285;product=CvpA family protein;protein_id=WP_000949956.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 29417 31756 . + . ID=gene-D5F88_RS05290;Name=D5F88_RS05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05290;old_locus_tag=D5F88_05300 NZ_QYTI01000047.1 Protein Homology CDS 29417 31756 . + 0 ID=cds-WP_001060323.1;Parent=gene-D5F88_RS05290;Dbxref=GenBank:WP_001060323.1;Name=WP_001060323.1;Ontology_term=GO:0006259,GO:0045910,GO:0004519,GO:0016887,GO:0030983;gbkey=CDS;go_function=endonuclease activity|0004519||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=DNA metabolic process|0006259||IEA,negative regulation of DNA recombination|0045910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650215.1;locus_tag=D5F88_RS05290;product=endonuclease MutS2;protein_id=WP_001060323.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 31760 32260 . + . ID=gene-D5F88_RS05295;Name=D5F88_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05295;old_locus_tag=D5F88_05305 NZ_QYTI01000047.1 Protein Homology CDS 31760 32260 . + 0 ID=cds-WP_000446812.1;Parent=gene-D5F88_RS05295;Dbxref=GenBank:WP_000446812.1;Name=WP_000446812.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767232.1;locus_tag=D5F88_RS05295;product=phosphatase PAP2 family protein;protein_id=WP_000446812.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 32323 32655 . + . ID=gene-D5F88_RS05300;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=D5F88_RS05300;old_locus_tag=D5F88_05310 NZ_QYTI01000047.1 Protein Homology CDS 32323 32655 . + 0 ID=cds-WP_001932060.1;Parent=gene-D5F88_RS05300;Dbxref=GenBank:WP_001932060.1;Name=WP_001932060.1;Ontology_term=GO:0015035;gbkey=CDS;gene=trxA;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001162959.1;locus_tag=D5F88_RS05300;product=thioredoxin;protein_id=WP_001932060.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 32701 33294 . - . ID=gene-D5F88_RS05305;Name=D5F88_RS05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05305;old_locus_tag=D5F88_05315 NZ_QYTI01000047.1 Protein Homology CDS 32701 33294 . - 0 ID=cds-WP_016503178.1;Parent=gene-D5F88_RS05305;Dbxref=GenBank:WP_016503178.1;Name=WP_016503178.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000402392.1;locus_tag=D5F88_RS05305;product=helix-turn-helix domain-containing protein;protein_id=WP_016503178.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 33471 34625 . - . ID=gene-D5F88_RS05310;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=D5F88_RS05310;old_locus_tag=D5F88_05320 NZ_QYTI01000047.1 Protein Homology CDS 33471 34625 . - 0 ID=cds-WP_307777619.1;Parent=gene-D5F88_RS05310;Dbxref=GenBank:WP_307777619.1;Name=WP_307777619.1;Ontology_term=GO:0006284,GO:0019104;gbkey=CDS;gene=mutY;go_function=DNA N-glycosylase activity|0019104||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002983107.1;locus_tag=D5F88_RS05310;product=A/G-specific adenine glycosylase;protein_id=WP_307777619.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 35688 35975 . + . ID=gene-D5F88_RS05315;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=D5F88_RS05315;old_locus_tag=D5F88_05325 NZ_QYTI01000047.1 Protein Homology CDS 35688 35975 . + 0 ID=cds-WP_001151773.1;Parent=gene-D5F88_RS05315;Dbxref=GenBank:WP_001151773.1;Name=WP_001151773.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001151773.1;locus_tag=D5F88_RS05315;product=30S ribosomal protein S6;protein_id=WP_001151773.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 35987 36478 . + . ID=gene-D5F88_RS05320;Name=D5F88_RS05320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05320;old_locus_tag=D5F88_05330 NZ_QYTI01000047.1 Protein Homology CDS 35987 36478 . + 0 ID=cds-WP_000609586.1;Parent=gene-D5F88_RS05320;Dbxref=GenBank:WP_000609586.1;Name=WP_000609586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003083754.1;locus_tag=D5F88_RS05320;product=single-stranded DNA-binding protein;protein_id=WP_000609586.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 36523 36762 . + . ID=gene-D5F88_RS05325;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=D5F88_RS05325;old_locus_tag=D5F88_05335 NZ_QYTI01000047.1 Protein Homology CDS 36523 36762 . + 0 ID=cds-WP_000068665.1;Parent=gene-D5F88_RS05325;Dbxref=GenBank:WP_000068665.1;Name=WP_000068665.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002983142.1;locus_tag=D5F88_RS05325;product=30S ribosomal protein S18;protein_id=WP_000068665.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 36932 37876 . + . ID=gene-D5F88_RS05330;Name=D5F88_RS05330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05330;old_locus_tag=D5F88_05340 NZ_QYTI01000047.1 Protein Homology CDS 36932 37876 . + 0 ID=cds-WP_000812121.1;Parent=gene-D5F88_RS05330;Dbxref=GenBank:WP_000812121.1;Name=WP_000812121.1;Ontology_term=GO:0030001,GO:0055085,GO:0046873,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metal ion transmembrane transporter activity|0046873||IEA;go_process=metal ion transport|0030001||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003085337.1;locus_tag=D5F88_RS05330;product=magnesium transporter CorA family protein;protein_id=WP_000812121.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 37901 38572 . + . ID=gene-D5F88_RS05335;Name=D5F88_RS05335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05335;old_locus_tag=D5F88_05345 NZ_QYTI01000047.1 Protein Homology CDS 37901 38572 . + 0 ID=cds-WP_000174846.1;Parent=gene-D5F88_RS05335;Dbxref=GenBank:WP_000174846.1;Name=WP_000174846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000174850.1;locus_tag=D5F88_RS05335;product=DUF1129 domain-containing protein;protein_id=WP_000174846.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 38704 41532 . + . ID=gene-D5F88_RS05340;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=D5F88_RS05340;old_locus_tag=D5F88_05350 NZ_QYTI01000047.1 Protein Homology CDS 38704 41532 . + 0 ID=cds-WP_016503174.1;Parent=gene-D5F88_RS05340;Dbxref=GenBank:WP_016503174.1;Name=WP_016503174.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001932063.1;locus_tag=D5F88_RS05340;product=excinuclease ABC subunit UvrA;protein_id=WP_016503174.1;transl_table=11 NZ_QYTI01000047.1 RefSeq pseudogene 41868 43366 . + . ID=gene-D5F88_RS05350;Name=D5F88_RS05350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05350;old_locus_tag=D5F88_05360;pseudo=true NZ_QYTI01000047.1 Protein Homology CDS 41868 43366 . + 0 ID=cds-D5F88_RS05350;Parent=gene-D5F88_RS05350;Note=frameshifted;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000208358.1;locus_tag=D5F88_RS05350;product=MDR family MFS transporter;pseudo=true;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 43368 44084 . + . ID=gene-D5F88_RS05355;Name=D5F88_RS05355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05355;old_locus_tag=D5F88_05365 NZ_QYTI01000047.1 Protein Homology CDS 43368 44084 . + 0 ID=cds-WP_016503171.1;Parent=gene-D5F88_RS05355;Dbxref=GenBank:WP_016503171.1;Name=WP_016503171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000584725.1;locus_tag=D5F88_RS05355;product=DUF4811 domain-containing protein;protein_id=WP_016503171.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 44184 45251 . + . ID=gene-D5F88_RS05360;Name=D5F88_RS05360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05360;old_locus_tag=D5F88_05370 NZ_QYTI01000047.1 Protein Homology CDS 44184 45251 . + 0 ID=cds-WP_086163477.1;Parent=gene-D5F88_RS05360;Dbxref=GenBank:WP_086163477.1;Name=WP_086163477.1;Ontology_term=GO:0006508,GO:0004177,GO:0008233,GO:0016787,GO:0046872,GO:0070006;gbkey=CDS;go_function=aminopeptidase activity|0004177||IEA,peptidase activity|0008233||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000505344.1;locus_tag=D5F88_RS05360;product=M24 family metallopeptidase;protein_id=WP_086163477.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 45263 45715 . + . ID=gene-D5F88_RS05365;Name=D5F88_RS05365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05365;old_locus_tag=D5F88_05375 NZ_QYTI01000047.1 Protein Homology CDS 45263 45715 . + 0 ID=cds-WP_001081097.1;Parent=gene-D5F88_RS05365;Dbxref=GenBank:WP_001081097.1;Name=WP_001081097.1;Ontology_term=GO:0006220,GO:0009972,GO:0004132,GO:0008270;gbkey=CDS;go_function=dCMP deaminase activity|0004132||IEA,zinc ion binding|0008270||IEA;go_process=pyrimidine nucleotide metabolic process|0006220||IEA,obsolete cytidine deamination|0009972||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644130.1;locus_tag=D5F88_RS05365;product=deoxycytidylate deaminase;protein_id=WP_001081097.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 46017 46181 . + . ID=gene-D5F88_RS05375;Name=D5F88_RS05375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05375;old_locus_tag=D5F88_05385 NZ_QYTI01000047.1 Protein Homology CDS 46017 46181 . + 0 ID=cds-WP_000927757.1;Parent=gene-D5F88_RS05375;Dbxref=GenBank:WP_000927757.1;Name=WP_000927757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000927757.1;locus_tag=D5F88_RS05375;product=hypothetical protein;protein_id=WP_000927757.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 46317 46757 . + . ID=gene-D5F88_RS05385;Name=D5F88_RS05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05385;old_locus_tag=D5F88_05395 NZ_QYTI01000047.1 Protein Homology CDS 46317 46757 . + 0 ID=cds-WP_000927730.1;Parent=gene-D5F88_RS05385;Dbxref=GenBank:WP_000927730.1;Name=WP_000927730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000927732.1;locus_tag=D5F88_RS05385;product=hypothetical protein;protein_id=WP_000927730.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 46770 46940 . + . ID=gene-D5F88_RS05390;Name=D5F88_RS05390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05390;old_locus_tag=D5F88_05400 NZ_QYTI01000047.1 Protein Homology CDS 46770 46940 . + 0 ID=cds-WP_016503167.1;Parent=gene-D5F88_RS05390;Dbxref=GenBank:WP_016503167.1;Name=WP_016503167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649347.1;locus_tag=D5F88_RS05390;product=hypothetical protein;protein_id=WP_016503167.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 46953 47183 . + . ID=gene-D5F88_RS05395;Name=D5F88_RS05395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05395;old_locus_tag=D5F88_05405 NZ_QYTI01000047.1 Protein Homology CDS 46953 47183 . + 0 ID=cds-WP_000511717.1;Parent=gene-D5F88_RS05395;Dbxref=GenBank:WP_000511717.1;Name=WP_000511717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000511720.1;locus_tag=D5F88_RS05395;product=hypothetical protein;protein_id=WP_000511717.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 47670 47912 . + . ID=gene-D5F88_RS05405;Name=D5F88_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05405;old_locus_tag=D5F88_05415 NZ_QYTI01000047.1 Protein Homology CDS 47670 47912 . + 0 ID=cds-WP_223297784.1;Parent=gene-D5F88_RS05405;Dbxref=GenBank:WP_223297784.1;Name=WP_223297784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000926392.1;locus_tag=D5F88_RS05405;product=DUF4176 domain-containing protein;protein_id=WP_223297784.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 48839 49399 . + . ID=gene-D5F88_RS05420;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=D5F88_RS05420;old_locus_tag=D5F88_05430 NZ_QYTI01000047.1 Protein Homology CDS 48839 49399 . + 0 ID=cds-WP_000568636.1;Parent=gene-D5F88_RS05420;Dbxref=GenBank:WP_000568636.1;Name=WP_000568636.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000568636.1;locus_tag=D5F88_RS05420;product=elongation factor P;protein_id=WP_000568636.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 49488 49877 . + . ID=gene-D5F88_RS05425;Name=D5F88_RS05425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05425;old_locus_tag=D5F88_05435 NZ_QYTI01000047.1 Protein Homology CDS 49488 49877 . + 0 ID=cds-WP_000206139.1;Parent=gene-D5F88_RS05425;Dbxref=GenBank:WP_000206139.1;Name=WP_000206139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014335250.1;locus_tag=D5F88_RS05425;product=Asp23/Gls24 family envelope stress response protein;protein_id=WP_000206139.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 49870 50304 . + . ID=gene-D5F88_RS05430;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=D5F88_RS05430;old_locus_tag=D5F88_05440 NZ_QYTI01000047.1 Protein Homology CDS 49870 50304 . + 0 ID=cds-WP_016503165.1;Parent=gene-D5F88_RS05430;Dbxref=GenBank:WP_016503165.1;Name=WP_016503165.1;Ontology_term=GO:0006353,GO:0003723;gbkey=CDS;gene=nusB;go_function=RNA binding|0003723||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000204941.1;locus_tag=D5F88_RS05430;product=transcription antitermination factor NusB;protein_id=WP_016503165.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 50388 51350 . - . ID=gene-D5F88_RS05435;Name=D5F88_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05435;old_locus_tag=D5F88_05445 NZ_QYTI01000047.1 Protein Homology CDS 50388 51350 . - 0 ID=cds-WP_000225972.1;Parent=gene-D5F88_RS05435;Dbxref=GenBank:WP_000225972.1;Name=WP_000225972.1;Ontology_term=GO:0006351,GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000225970.1;locus_tag=D5F88_RS05435;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000225972.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 51352 52791 . - . ID=gene-D5F88_RS05440;Name=D5F88_RS05440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05440;old_locus_tag=D5F88_05450 NZ_QYTI01000047.1 Protein Homology CDS 51352 52791 . - 0 ID=cds-WP_016503164.1;Parent=gene-D5F88_RS05440;Dbxref=GenBank:WP_016503164.1;Name=WP_016503164.1;Ontology_term=GO:0005975,GO:0004564,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=beta-fructofuranosidase activity|0004564||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001053047.1;locus_tag=D5F88_RS05440;product=sucrose-6-phosphate hydrolase;protein_id=WP_016503164.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 52976 54895 . + . ID=gene-D5F88_RS05445;Name=D5F88_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05445;old_locus_tag=D5F88_05455 NZ_QYTI01000047.1 Protein Homology CDS 52976 54895 . + 0 ID=cds-WP_016503163.1;Parent=gene-D5F88_RS05445;Dbxref=GenBank:WP_016503163.1;Name=WP_016503163.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645604.1;locus_tag=D5F88_RS05445;product=sucrose-specific PTS transporter subunit IIBC;protein_id=WP_016503163.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 54963 55844 . + . ID=gene-D5F88_RS05450;Name=scrK;gbkey=Gene;gene=scrK;gene_biotype=protein_coding;locus_tag=D5F88_RS05450;old_locus_tag=D5F88_05460 NZ_QYTI01000047.1 Protein Homology CDS 54963 55844 . + 0 ID=cds-WP_124758760.1;Parent=gene-D5F88_RS05450;Dbxref=GenBank:WP_124758760.1;Name=WP_124758760.1;Ontology_term=GO:0005524,GO:0008865,GO:0046872;gbkey=CDS;gene=scrK;go_function=ATP binding|0005524||IEA,fructokinase activity|0008865||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646443.1;locus_tag=D5F88_RS05450;product=fructokinase ScrK;protein_id=WP_124758760.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 55962 56909 . + . ID=gene-D5F88_RS05455;Name=manA;gbkey=Gene;gene=manA;gene_biotype=protein_coding;locus_tag=D5F88_RS05455;old_locus_tag=D5F88_05465 NZ_QYTI01000047.1 Protein Homology CDS 55962 56909 . + 0 ID=cds-WP_124749130.1;Parent=gene-D5F88_RS05455;Dbxref=GenBank:WP_124749130.1;Name=WP_124749130.1;Ontology_term=GO:0005975,GO:0004476,GO:0008270;gbkey=CDS;gene=manA;go_function=mannose-6-phosphate isomerase activity|0004476||IEA,zinc ion binding|0008270||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001294260.1;locus_tag=D5F88_RS05455;product=mannose-6-phosphate isomerase%2C class I;protein_id=WP_124749130.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 57018 59546 . + . ID=gene-D5F88_RS05460;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=D5F88_RS05460;old_locus_tag=D5F88_05470 NZ_QYTI01000047.1 Protein Homology CDS 57018 59546 . + 0 ID=cds-WP_016503159.1;Parent=gene-D5F88_RS05460;Dbxref=GenBank:WP_016503159.1;Name=WP_016503159.1;Ontology_term=GO:0043952,GO:0005524,GO:0015450,GO:0016887,GO:0009898;gbkey=CDS;gene=secA;go_component=cytoplasmic side of plasma membrane|0009898||IEA;go_function=ATP binding|0005524||IEA,protein-transporting ATPase activity|0015450||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648626.1;locus_tag=D5F88_RS05460;product=preprotein translocase subunit SecA;protein_id=WP_016503159.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 59672 60679 . + . ID=gene-D5F88_RS05465;Name=D5F88_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05465;old_locus_tag=D5F88_05475 NZ_QYTI01000047.1 Protein Homology CDS 59672 60679 . + 0 ID=cds-WP_086163474.1;Parent=gene-D5F88_RS05465;Dbxref=GenBank:WP_086163474.1;Name=WP_086163474.1;Ontology_term=GO:0009073,GO:0016832;gbkey=CDS;go_function=aldehyde-lyase activity|0016832||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285097.1;locus_tag=D5F88_RS05465;product=3-deoxy-7-phosphoheptulonate synthase;protein_id=WP_086163474.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 60704 61063 . + . ID=gene-D5F88_RS05470;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=D5F88_RS05470;old_locus_tag=D5F88_05480 NZ_QYTI01000047.1 Protein Homology CDS 60704 61063 . + 0 ID=cds-WP_000635015.1;Parent=gene-D5F88_RS05470;Dbxref=GenBank:WP_000635015.1;Name=WP_000635015.1;Ontology_term=GO:0008610,GO:0008897;gbkey=CDS;gene=acpS;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000635015.1;locus_tag=D5F88_RS05470;product=holo-ACP synthase;protein_id=WP_000635015.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 61060 62160 . + . ID=gene-D5F88_RS05475;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=D5F88_RS05475;old_locus_tag=D5F88_05485 NZ_QYTI01000047.1 Protein Homology CDS 61060 62160 . + 0 ID=cds-WP_000625946.1;Parent=gene-D5F88_RS05475;Dbxref=GenBank:WP_000625946.1;Name=WP_000625946.1;Ontology_term=GO:0006522,GO:0009252,GO:0008784;gbkey=CDS;gene=alr;go_function=alanine racemase activity|0008784||IEA;go_process=alanine metabolic process|0006522||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000625941.1;locus_tag=D5F88_RS05475;product=alanine racemase;protein_id=WP_000625946.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 62253 63791 . + . ID=gene-D5F88_RS05480;Name=D5F88_RS05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05480;old_locus_tag=D5F88_05490 NZ_QYTI01000047.1 Protein Homology CDS 62253 63791 . + 0 ID=cds-WP_086163473.1;Parent=gene-D5F88_RS05480;Dbxref=GenBank:WP_086163473.1;Name=WP_086163473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649924.1;locus_tag=D5F88_RS05480;product=CHAP domain-containing protein;protein_id=WP_086163473.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 63871 65886 . + . ID=gene-D5F88_RS05485;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=D5F88_RS05485;old_locus_tag=D5F88_05495 NZ_QYTI01000047.1 Protein Homology CDS 63871 65886 . + 0 ID=cds-WP_086163472.1;Parent=gene-D5F88_RS05485;Dbxref=GenBank:WP_086163472.1;Name=WP_086163472.1;Ontology_term=GO:0006281,GO:0006310,GO:0003676,GO:0003678,GO:0005524;gbkey=CDS;gene=recG;go_function=nucleic acid binding|0003676||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000926642.1;locus_tag=D5F88_RS05485;product=ATP-dependent DNA helicase RecG;protein_id=WP_086163472.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 66177 67091 . + . ID=gene-D5F88_RS05490;Name=D5F88_RS05490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05490;old_locus_tag=D5F88_05500 NZ_QYTI01000047.1 Protein Homology CDS 66177 67091 . + 0 ID=cds-WP_016503154.1;Parent=gene-D5F88_RS05490;Dbxref=GenBank:WP_016503154.1;Name=WP_016503154.1;Ontology_term=GO:0016491,GO:0050661;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503154.1;locus_tag=D5F88_RS05490;product=aldo/keto reductase;protein_id=WP_016503154.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 67189 68067 . + . ID=gene-D5F88_RS05495;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=D5F88_RS05495;old_locus_tag=D5F88_05505 NZ_QYTI01000047.1 Protein Homology CDS 67189 68067 . + 0 ID=cds-WP_001086864.1;Parent=gene-D5F88_RS05495;Dbxref=GenBank:WP_001086864.1;Name=WP_001086864.1;Ontology_term=GO:0019632,GO:0004764,GO:0050661;gbkey=CDS;gene=aroE;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA,NADP binding|0050661||IEA;go_process=shikimate metabolic process|0019632||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481154.1;locus_tag=D5F88_RS05495;product=shikimate dehydrogenase;protein_id=WP_001086864.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 68102 69064 . - . ID=gene-D5F88_RS05500;Name=D5F88_RS05500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05500;old_locus_tag=D5F88_05510 NZ_QYTI01000047.1 Protein Homology CDS 68102 69064 . - 0 ID=cds-WP_000723060.1;Parent=gene-D5F88_RS05500;Dbxref=GenBank:WP_000723060.1;Name=WP_000723060.1;Ontology_term=GO:0006528,GO:0004067;gbkey=CDS;go_function=asparaginase activity|0004067||IEA;go_process=asparagine metabolic process|0006528||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643115.1;locus_tag=D5F88_RS05500;product=asparaginase;protein_id=WP_000723060.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 69133 70515 . + . ID=gene-D5F88_RS05505;Name=D5F88_RS05505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05505;old_locus_tag=D5F88_05515 NZ_QYTI01000047.1 Protein Homology CDS 69133 70515 . + 0 ID=cds-WP_016503151.1;Parent=gene-D5F88_RS05505;Dbxref=GenBank:WP_016503151.1;Name=WP_016503151.1;Ontology_term=GO:0008152,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503151.1;locus_tag=D5F88_RS05505;product=HAD-IIB family hydrolase;protein_id=WP_016503151.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 70571 71023 . - . ID=gene-D5F88_RS05510;Name=D5F88_RS05510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05510;old_locus_tag=D5F88_05520 NZ_QYTI01000047.1 Protein Homology CDS 70571 71023 . - 0 ID=cds-WP_000080032.1;Parent=gene-D5F88_RS05510;Dbxref=GenBank:WP_000080032.1;Name=WP_000080032.1;Ontology_term=GO:0042802;gbkey=CDS;go_function=identical protein binding|0042802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000080031.1;locus_tag=D5F88_RS05510;product=universal stress protein;protein_id=WP_000080032.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 71290 72501 . + . ID=gene-D5F88_RS05515;Name=D5F88_RS05515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05515;old_locus_tag=D5F88_05525 NZ_QYTI01000047.1 Protein Homology CDS 71290 72501 . + 0 ID=cds-WP_000688108.1;Parent=gene-D5F88_RS05515;Dbxref=GenBank:WP_000688108.1;Name=WP_000688108.1;Ontology_term=GO:0009058,GO:0003824,GO:0030170;gbkey=CDS;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011836593.1;locus_tag=D5F88_RS05515;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_000688108.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 72627 73412 . + . ID=gene-D5F88_RS05520;Name=codY;gbkey=Gene;gene=codY;gene_biotype=protein_coding;locus_tag=D5F88_RS05520;old_locus_tag=D5F88_05530 NZ_QYTI01000047.1 Protein Homology CDS 72627 73412 . + 0 ID=cds-WP_001133183.1;Parent=gene-D5F88_RS05520;Dbxref=GenBank:WP_001133183.1;Name=WP_001133183.1;Ontology_term=GO:0045892,GO:0003677,GO:0003700,GO:0005525;gbkey=CDS;gene=codY;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,GTP binding|0005525||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001133183.1;locus_tag=D5F88_RS05520;product=GTP-sensing pleiotropic transcriptional regulator CodY;protein_id=WP_001133183.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 73479 74027 . + . ID=gene-D5F88_RS05525;Name=D5F88_RS05525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05525;old_locus_tag=D5F88_05535 NZ_QYTI01000047.1 Protein Homology CDS 73479 74027 . + 0 ID=cds-WP_000158743.1;Parent=gene-D5F88_RS05525;Dbxref=GenBank:WP_000158743.1;Name=WP_000158743.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503150.1;locus_tag=D5F88_RS05525;product=cysteine hydrolase family protein;protein_id=WP_000158743.1;transl_table=11 NZ_QYTI01000047.1 RefSeq pseudogene 74074 75038 . - . ID=gene-D5F88_RS05530;Name=D5F88_RS05530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05530;old_locus_tag=D5F88_05540;pseudo=true NZ_QYTI01000047.1 Protein Homology CDS 74074 75038 . - 0 ID=cds-D5F88_RS05530;Parent=gene-D5F88_RS05530;Note=frameshifted;Ontology_term=GO:0006631,GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481150.1;locus_tag=D5F88_RS05530;product=3-hydroxyacyl-CoA dehydrogenase;pseudo=true;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 75227 75856 . + . ID=gene-D5F88_RS05535;Name=D5F88_RS05535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05535;old_locus_tag=D5F88_05545 NZ_QYTI01000047.1 Protein Homology CDS 75227 75856 . + 0 ID=cds-WP_011074751.1;Parent=gene-D5F88_RS05535;Dbxref=GenBank:WP_011074751.1;Name=WP_011074751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011074751.1;locus_tag=D5F88_RS05535;product=helix-turn-helix transcriptional regulator;protein_id=WP_011074751.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 75867 76697 . + . ID=gene-D5F88_RS05540;Name=D5F88_RS05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05540;old_locus_tag=D5F88_05550 NZ_QYTI01000047.1 Protein Homology CDS 75867 76697 . + 0 ID=cds-WP_086163470.1;Parent=gene-D5F88_RS05540;Dbxref=GenBank:WP_086163470.1;Name=WP_086163470.1;Ontology_term=GO:0006468,GO:0006470,GO:0004674,GO:0005524,GO:0016776;gbkey=CDS;go_function=protein serine/threonine kinase activity|0004674||IEA,ATP binding|0005524||IEA,phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA;go_process=protein phosphorylation|0006468||IEA,protein dephosphorylation|0006470||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000390093.1;locus_tag=D5F88_RS05540;product=pyruvate%2C water dikinase regulatory protein;protein_id=WP_086163470.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 76710 79355 . + . ID=gene-D5F88_RS05545;Name=ppdK;gbkey=Gene;gene=ppdK;gene_biotype=protein_coding;locus_tag=D5F88_RS05545;old_locus_tag=D5F88_05555 NZ_QYTI01000047.1 Protein Homology CDS 76710 79355 . + 0 ID=cds-WP_086163469.1;Parent=gene-D5F88_RS05545;Dbxref=GenBank:WP_086163469.1;Name=WP_086163469.1;Ontology_term=GO:0006090,GO:0050242;gbkey=CDS;gene=ppdK;go_function=pyruvate%2C phosphate dikinase activity|0050242||IEA;go_process=pyruvate metabolic process|0006090||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632219.1;locus_tag=D5F88_RS05545;product=pyruvate%2C phosphate dikinase;protein_id=WP_086163469.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 79493 79795 . + . ID=gene-D5F88_RS05550;Name=gatC;gbkey=Gene;gene=gatC;gene_biotype=protein_coding;locus_tag=D5F88_RS05550;old_locus_tag=D5F88_05560 NZ_QYTI01000047.1 Protein Homology CDS 79493 79795 . + 0 ID=cds-WP_000703033.1;Parent=gene-D5F88_RS05550;Dbxref=GenBank:WP_000703033.1;Name=WP_000703033.1;Ontology_term=GO:0006424,GO:0006450,GO:0050567,GO:0030956;gbkey=CDS;gene=gatC;go_component=glutamyl-tRNA(Gln) amidotransferase complex|0030956||IEA;go_function=glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity|0050567||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA,regulation of translational fidelity|0006450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006147946.1;locus_tag=D5F88_RS05550;product=Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC;protein_id=WP_000703033.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 79795 81261 . + . ID=gene-D5F88_RS05555;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=D5F88_RS05555;old_locus_tag=D5F88_05565 NZ_QYTI01000047.1 Protein Homology CDS 79795 81261 . + 0 ID=cds-WP_086163468.1;Parent=gene-D5F88_RS05555;Dbxref=GenBank:WP_086163468.1;Name=WP_086163468.1;Ontology_term=GO:0006412,GO:0006424,GO:0050567,GO:0030956;gbkey=CDS;gene=gatA;go_component=glutamyl-tRNA(Gln) amidotransferase complex|0030956||IEA;go_function=glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity|0050567||IEA;go_process=translation|0006412||IEA,glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014295200.1;locus_tag=D5F88_RS05555;product=Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA;protein_id=WP_086163468.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 81261 82703 . + . ID=gene-D5F88_RS05560;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=D5F88_RS05560;old_locus_tag=D5F88_05570 NZ_QYTI01000047.1 Protein Homology CDS 81261 82703 . + 0 ID=cds-WP_001008627.1;Parent=gene-D5F88_RS05560;Dbxref=GenBank:WP_001008627.1;Name=WP_001008627.1;Ontology_term=GO:0016884;gbkey=CDS;gene=gatB;go_function=carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor|0016884||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002946582.1;locus_tag=D5F88_RS05560;product=Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB;protein_id=WP_001008627.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 82833 83747 . + . ID=gene-D5F88_RS05565;Name=D5F88_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05565;old_locus_tag=D5F88_05575 NZ_QYTI01000047.1 Protein Homology CDS 82833 83747 . + 0 ID=cds-WP_000161966.1;Parent=gene-D5F88_RS05565;Dbxref=GenBank:WP_000161966.1;Name=WP_000161966.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000161968.1;locus_tag=D5F88_RS05565;product=DMT family transporter;protein_id=WP_000161966.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 83864 84391 . + . ID=gene-D5F88_RS05570;Name=D5F88_RS05570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05570;old_locus_tag=D5F88_05580 NZ_QYTI01000047.1 Protein Homology CDS 83864 84391 . + 0 ID=cds-WP_000020580.1;Parent=gene-D5F88_RS05570;Dbxref=GenBank:WP_000020580.1;Name=WP_000020580.1;Ontology_term=GO:0008962;gbkey=CDS;go_function=phosphatidylglycerophosphatase activity|0008962||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014612026.1;locus_tag=D5F88_RS05570;product=YqeG family HAD IIIA-type phosphatase;protein_id=WP_000020580.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 84391 85509 . + . ID=gene-D5F88_RS05575;Name=yqeH;gbkey=Gene;gene=yqeH;gene_biotype=protein_coding;locus_tag=D5F88_RS05575;old_locus_tag=D5F88_05585 NZ_QYTI01000047.1 Protein Homology CDS 84391 85509 . + 0 ID=cds-WP_016503143.1;Parent=gene-D5F88_RS05575;Dbxref=GenBank:WP_016503143.1;Name=WP_016503143.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=yqeH;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018363769.1;locus_tag=D5F88_RS05575;product=ribosome biogenesis GTPase YqeH;protein_id=WP_016503143.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 85602 85919 . + . ID=gene-D5F88_RS05580;Name=yhbY;gbkey=Gene;gene=yhbY;gene_biotype=protein_coding;locus_tag=D5F88_RS05580;old_locus_tag=D5F88_05590 NZ_QYTI01000047.1 Protein Homology CDS 85602 85919 . + 0 ID=cds-WP_000958132.1;Parent=gene-D5F88_RS05580;Dbxref=GenBank:WP_000958132.1;Name=WP_000958132.1;Ontology_term=GO:0003723;gbkey=CDS;gene=yhbY;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058732.1;locus_tag=D5F88_RS05580;product=ribosome assembly RNA-binding protein YhbY;protein_id=WP_000958132.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 86049 86681 . + . ID=gene-D5F88_RS05585;Name=D5F88_RS05585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05585;old_locus_tag=D5F88_05595 NZ_QYTI01000047.1 Protein Homology CDS 86049 86681 . + 0 ID=cds-WP_001162767.1;Parent=gene-D5F88_RS05585;Dbxref=GenBank:WP_001162767.1;Name=WP_001162767.1;Ontology_term=GO:0009435,GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=NAD+ biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002313156.1;locus_tag=D5F88_RS05585;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_001162767.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 86678 87265 . + . ID=gene-D5F88_RS05590;Name=yqeK;gbkey=Gene;gene=yqeK;gene_biotype=protein_coding;locus_tag=D5F88_RS05590;old_locus_tag=D5F88_05600 NZ_QYTI01000047.1 Protein Homology CDS 86678 87265 . + 0 ID=cds-WP_016503142.1;Parent=gene-D5F88_RS05590;Dbxref=GenBank:WP_016503142.1;Name=WP_016503142.1;gbkey=CDS;gene=yqeK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649401.1;locus_tag=D5F88_RS05590;product=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK;protein_id=WP_016503142.1;transl_table=11 NZ_QYTI01000047.1 RefSeq pseudogene 87329 87850 . + . ID=gene-D5F88_RS05595;Name=D5F88_RS05595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05595;old_locus_tag=D5F88_05605;pseudo=true NZ_QYTI01000047.1 Protein Homology CDS 87329 87850 . + 0 ID=cds-D5F88_RS05595;Parent=gene-D5F88_RS05595;Note=internal stop;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000128172.1;locus_tag=D5F88_RS05595;product=cysteine hydrolase family protein;pseudo=true;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 87852 88208 . + . ID=gene-D5F88_RS05600;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=D5F88_RS05600;old_locus_tag=D5F88_05610 NZ_QYTI01000047.1 Protein Homology CDS 87852 88208 . + 0 ID=cds-WP_000136423.1;Parent=gene-D5F88_RS05600;Dbxref=GenBank:WP_000136423.1;Name=WP_000136423.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000136425.1;locus_tag=D5F88_RS05600;product=ribosome silencing factor;protein_id=WP_000136423.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 88274 89008 . + . ID=gene-D5F88_RS05605;Name=D5F88_RS05605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05605;old_locus_tag=D5F88_05615 NZ_QYTI01000047.1 Protein Homology CDS 88274 89008 . + 0 ID=cds-WP_000257075.1;Parent=gene-D5F88_RS05605;Dbxref=GenBank:WP_000257075.1;Name=WP_000257075.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000257057.1;locus_tag=D5F88_RS05605;product=class I SAM-dependent DNA methyltransferase;protein_id=WP_000257075.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 89031 89282 . + . ID=gene-D5F88_RS05610;Name=D5F88_RS05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05610;old_locus_tag=D5F88_05620 NZ_QYTI01000047.1 Protein Homology CDS 89031 89282 . + 0 ID=cds-WP_000583229.1;Parent=gene-D5F88_RS05610;Dbxref=GenBank:WP_000583229.1;Name=WP_000583229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000583227.1;locus_tag=D5F88_RS05610;product=hypothetical protein;protein_id=WP_000583229.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 89279 90388 . + . ID=gene-D5F88_RS05615;Name=D5F88_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05615;old_locus_tag=D5F88_05625 NZ_QYTI01000047.1 Protein Homology CDS 89279 90388 . + 0 ID=cds-WP_016503141.1;Parent=gene-D5F88_RS05615;Dbxref=GenBank:WP_016503141.1;Name=WP_016503141.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503141.1;locus_tag=D5F88_RS05615;product=nucleotidyltransferase;protein_id=WP_016503141.1;transl_table=11 NZ_QYTI01000047.1 RefSeq pseudogene 90481 91192 . + . ID=gene-D5F88_RS05620;Name=D5F88_RS05620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05620;old_locus_tag=D5F88_05630;pseudo=true NZ_QYTI01000047.1 Protein Homology CDS 90481 91192 . + 0 ID=cds-D5F88_RS05620;Parent=gene-D5F88_RS05620;Note=frameshifted;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000859551.1;locus_tag=D5F88_RS05620;product=MerR family transcriptional regulator;pseudo=true;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 91331 91735 . + . ID=gene-D5F88_RS05625;Name=D5F88_RS05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05625;old_locus_tag=D5F88_05635 NZ_QYTI01000047.1 Protein Homology CDS 91331 91735 . + 0 ID=cds-WP_000675691.1;Parent=gene-D5F88_RS05625;Dbxref=GenBank:WP_000675691.1;Name=WP_000675691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000675692.1;locus_tag=D5F88_RS05625;product=cupin domain-containing protein;protein_id=WP_000675691.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 92001 92714 . - . ID=gene-D5F88_RS05630;Name=D5F88_RS05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05630;old_locus_tag=D5F88_05640 NZ_QYTI01000047.1 Protein Homology CDS 92001 92714 . - 0 ID=cds-WP_016503138.1;Parent=gene-D5F88_RS05630;Dbxref=GenBank:WP_016503138.1;Name=WP_016503138.1;Ontology_term=GO:0055085,GO:0015267;gbkey=CDS;go_function=channel activity|0015267||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767547.1;locus_tag=D5F88_RS05630;product=MIP/aquaporin family protein;protein_id=WP_016503138.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 92724 93098 . - . ID=gene-D5F88_RS05635;Name=dhaM;gbkey=Gene;gene=dhaM;gene_biotype=protein_coding;locus_tag=D5F88_RS05635;old_locus_tag=D5F88_05645 NZ_QYTI01000047.1 Protein Homology CDS 92724 93098 . - 0 ID=cds-WP_001279899.1;Parent=gene-D5F88_RS05635;Dbxref=GenBank:WP_001279899.1;Name=WP_001279899.1;Ontology_term=GO:0047324;gbkey=CDS;gene=dhaM;go_function=phosphoenolpyruvate-glycerone phosphotransferase activity|0047324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002960428.1;locus_tag=D5F88_RS05635;product=dihydroxyacetone kinase phosphoryl donor subunit DhaM;protein_id=WP_001279899.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 93098 93676 . - . ID=gene-D5F88_RS05640;Name=dhaL;gbkey=Gene;gene=dhaL;gene_biotype=protein_coding;locus_tag=D5F88_RS05640;old_locus_tag=D5F88_05650 NZ_QYTI01000047.1 Protein Homology CDS 93098 93676 . - 0 ID=cds-WP_000453281.1;Parent=gene-D5F88_RS05640;Dbxref=GenBank:WP_000453281.1;Name=WP_000453281.1;Ontology_term=GO:0006071,GO:0047324;gbkey=CDS;gene=dhaL;go_function=phosphoenolpyruvate-glycerone phosphotransferase activity|0047324||IEA;go_process=glycerol metabolic process|0006071||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000453283.1;locus_tag=D5F88_RS05640;product=dihydroxyacetone kinase subunit DhaL;protein_id=WP_000453281.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 93714 94703 . - . ID=gene-D5F88_RS05645;Name=dhaK;gbkey=Gene;gene=dhaK;gene_biotype=protein_coding;locus_tag=D5F88_RS05645;old_locus_tag=D5F88_05655 NZ_QYTI01000047.1 Protein Homology CDS 93714 94703 . - 0 ID=cds-WP_016481138.1;Parent=gene-D5F88_RS05645;Dbxref=GenBank:WP_016481138.1;Name=WP_016481138.1;Ontology_term=GO:0006071,GO:0004371;gbkey=CDS;gene=dhaK;go_function=glycerone kinase activity|0004371||IEA;go_process=glycerol metabolic process|0006071||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000722658.1;locus_tag=D5F88_RS05645;product=dihydroxyacetone kinase subunit DhaK;protein_id=WP_016481138.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 94877 95413 . + . ID=gene-D5F88_RS05655;Name=dhaS;gbkey=Gene;gene=dhaS;gene_biotype=protein_coding;locus_tag=D5F88_RS05655;old_locus_tag=D5F88_05665 NZ_QYTI01000047.1 Protein Homology CDS 94877 95413 . + 0 ID=cds-WP_000204281.1;Parent=gene-D5F88_RS05655;Dbxref=GenBank:WP_000204281.1;Name=WP_000204281.1;gbkey=CDS;gene=dhaS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643895.1;locus_tag=D5F88_RS05655;product=dihydroxyacetone kinase transcriptional activator DhaS;protein_id=WP_000204281.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 95423 96409 . + . ID=gene-D5F88_RS05660;Name=dhaQ;gbkey=Gene;gene=dhaQ;gene_biotype=protein_coding;locus_tag=D5F88_RS05660;old_locus_tag=D5F88_05670 NZ_QYTI01000047.1 Protein Homology CDS 95423 96409 . + 0 ID=cds-WP_001232461.1;Parent=gene-D5F88_RS05660;Dbxref=GenBank:WP_001232461.1;Name=WP_001232461.1;Ontology_term=GO:0006071,GO:0004371;gbkey=CDS;gene=dhaQ;go_function=glycerone kinase activity|0004371||IEA;go_process=glycerol metabolic process|0006071||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285056.1;locus_tag=D5F88_RS05660;product=DhaKLM operon coactivator DhaQ;protein_id=WP_001232461.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 96527 97243 . + . ID=gene-D5F88_RS05670;Name=D5F88_RS05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05670;old_locus_tag=D5F88_05680 NZ_QYTI01000047.1 Protein Homology CDS 96527 97243 . + 0 ID=cds-WP_016503133.1;Parent=gene-D5F88_RS05670;Dbxref=GenBank:WP_016503133.1;Name=WP_016503133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008088325.1;locus_tag=D5F88_RS05670;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_016503133.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 97398 98087 . + . ID=gene-D5F88_RS05680;Name=D5F88_RS05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05680;old_locus_tag=D5F88_05690 NZ_QYTI01000047.1 Protein Homology CDS 97398 98087 . + 0 ID=cds-WP_000956422.1;Parent=gene-D5F88_RS05680;Dbxref=GenBank:WP_000956422.1;Name=WP_000956422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000956417.1;locus_tag=D5F88_RS05680;product=gamma-glutamyl-gamma-aminobutyrate hydrolase family protein;protein_id=WP_000956422.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 98189 99022 . + . ID=gene-D5F88_RS05685;Name=D5F88_RS05685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05685;old_locus_tag=D5F88_05695 NZ_QYTI01000047.1 Protein Homology CDS 98189 99022 . + 0 ID=cds-WP_124773281.1;Parent=gene-D5F88_RS05685;Dbxref=GenBank:WP_124773281.1;Name=WP_124773281.1;Ontology_term=GO:0006865;gbkey=CDS;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650969.1;locus_tag=D5F88_RS05685;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_124773281.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 99164 99988 . + . ID=gene-D5F88_RS05690;Name=D5F88_RS05690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05690;old_locus_tag=D5F88_05700 NZ_QYTI01000047.1 Protein Homology CDS 99164 99988 . + 0 ID=cds-WP_016503131.1;Parent=gene-D5F88_RS05690;Dbxref=GenBank:WP_016503131.1;Name=WP_016503131.1;Ontology_term=GO:0042626,GO:0140359,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018543698.1;locus_tag=D5F88_RS05690;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=WP_016503131.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 100122 101498 . + . ID=gene-D5F88_RS05695;Name=D5F88_RS05695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05695;old_locus_tag=D5F88_05705 NZ_QYTI01000047.1 Protein Homology CDS 100122 101498 . + 0 ID=cds-WP_086163466.1;Parent=gene-D5F88_RS05695;Dbxref=GenBank:WP_086163466.1;Name=WP_086163466.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000176659.1;locus_tag=D5F88_RS05695;product=M20/M25/M40 family metallo-hydrolase;protein_id=WP_086163466.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 101491 102561 . + . ID=gene-D5F88_RS05700;Name=D5F88_RS05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05700;old_locus_tag=D5F88_05710 NZ_QYTI01000047.1 Protein Homology CDS 101491 102561 . + 0 ID=cds-WP_000032379.1;Parent=gene-D5F88_RS05700;Dbxref=GenBank:WP_000032379.1;Name=WP_000032379.1;Ontology_term=GO:0048473,GO:0005524,GO:0016887,GO:0033232,GO:0042626;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type D-methionine transporter activity|0033232||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000032379.1;locus_tag=D5F88_RS05700;product=methionine ABC transporter ATP-binding protein;protein_id=WP_000032379.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 102558 103250 . + . ID=gene-D5F88_RS05705;Name=D5F88_RS05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05705;old_locus_tag=D5F88_05715 NZ_QYTI01000047.1 Protein Homology CDS 102558 103250 . + 0 ID=cds-WP_000574037.1;Parent=gene-D5F88_RS05705;Dbxref=GenBank:WP_000574037.1;Name=WP_000574037.1;Ontology_term=GO:0048473,GO:0033232,GO:0042626;gbkey=CDS;go_function=ABC-type D-methionine transporter activity|0033232||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000574038.1;locus_tag=D5F88_RS05705;product=methionine ABC transporter permease;protein_id=WP_000574037.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 103299 104354 . - . ID=gene-D5F88_RS05710;Name=D5F88_RS05710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05710;old_locus_tag=D5F88_05720 NZ_QYTI01000047.1 Protein Homology CDS 103299 104354 . - 0 ID=cds-WP_016503130.1;Parent=gene-D5F88_RS05710;Dbxref=GenBank:WP_016503130.1;Name=WP_016503130.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632209.1;locus_tag=D5F88_RS05710;product=zinc-dependent alcohol dehydrogenase family protein;protein_id=WP_016503130.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 104468 105835 . - . ID=gene-D5F88_RS05715;Name=brnQ;gbkey=Gene;gene=brnQ;gene_biotype=protein_coding;locus_tag=D5F88_RS05715;old_locus_tag=D5F88_05725 NZ_QYTI01000047.1 Protein Homology CDS 104468 105835 . - 0 ID=cds-WP_086163465.1;Parent=gene-D5F88_RS05715;Dbxref=GenBank:WP_086163465.1;Name=WP_086163465.1;Ontology_term=GO:0015803,GO:0015658,GO:0016020;gbkey=CDS;gene=brnQ;go_component=membrane|0016020||IEA;go_function=branched-chain amino acid transmembrane transporter activity|0015658||IEA;go_process=branched-chain amino acid transport|0015803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000769341.1;locus_tag=D5F88_RS05715;product=branched-chain amino acid transport system II carrier protein;protein_id=WP_086163465.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 106011 107219 . + . ID=gene-D5F88_RS05720;Name=sstT;gbkey=Gene;gene=sstT;gene_biotype=protein_coding;locus_tag=D5F88_RS05720;old_locus_tag=D5F88_05730 NZ_QYTI01000047.1 Protein Homology CDS 106011 107219 . + 0 ID=cds-WP_000819590.1;Parent=gene-D5F88_RS05720;Dbxref=GenBank:WP_000819590.1;Name=WP_000819590.1;Ontology_term=GO:0015826,GO:0032329,GO:0015293,GO:0016020;gbkey=CDS;gene=sstT;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=threonine transport|0015826||IEA,serine transport|0032329||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000819595.1;locus_tag=D5F88_RS05720;product=serine/threonine transporter SstT;protein_id=WP_000819590.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 107388 107936 . + . ID=gene-D5F88_RS05725;Name=D5F88_RS05725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05725;old_locus_tag=D5F88_05735 NZ_QYTI01000047.1 Protein Homology CDS 107388 107936 . + 0 ID=cds-WP_001095696.1;Parent=gene-D5F88_RS05725;Dbxref=GenBank:WP_001095696.1;Name=WP_001095696.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001095696.1;locus_tag=D5F88_RS05725;product=ECF-type riboflavin transporter substrate-binding protein;protein_id=WP_001095696.1;transl_table=11 NZ_QYTI01000047.1 RefSeq gene 107953 109629 . + . ID=gene-D5F88_RS05730;Name=D5F88_RS05730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05730;old_locus_tag=D5F88_05740 NZ_QYTI01000047.1 Protein Homology CDS 107953 109629 . + 0 ID=cds-WP_000651257.1;Parent=gene-D5F88_RS05730;Dbxref=GenBank:WP_000651257.1;Name=WP_000651257.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000651253.1;locus_tag=D5F88_RS05730;product=ABC transporter ATP-binding protein;protein_id=WP_000651257.1;transl_table=11 NZ_QYTI01000047.1 RefSeq pseudogene 109622 109914 . + . ID=gene-D5F88_RS05735;Name=D5F88_RS05735;end_range=109914,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05735;old_locus_tag=D5F88_05745;partial=true;pseudo=true NZ_QYTI01000047.1 Protein Homology CDS 109622 109914 . + 0 ID=cds-D5F88_RS05735;Parent=gene-D5F88_RS05735;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=109914,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503127.1;locus_tag=D5F88_RS05735;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000048.1 1 23088 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000048.1 RefSeq region 1 23088 . + . ID=NZ_QYTI01000048.1:1..23088;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000048.1 RefSeq pseudogene 13 996 . + . ID=gene-D5F88_RS05740;Name=D5F88_RS05740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05740;old_locus_tag=D5F88_05750;partial=true;pseudo=true;start_range=.,13 NZ_QYTI01000048.1 Protein Homology CDS 13 996 . + 0 ID=cds-D5F88_RS05740;Parent=gene-D5F88_RS05740;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009252,GO:0071555,GO:0005524,GO:0047480;gbkey=CDS;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647798.1;locus_tag=D5F88_RS05740;partial=true;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;pseudo=true;start_range=.,13;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 1182 2402 . + . ID=gene-D5F88_RS05745;Name=D5F88_RS05745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05745;old_locus_tag=D5F88_05755 NZ_QYTI01000048.1 Protein Homology CDS 1182 2402 . + 0 ID=cds-WP_000793484.1;Parent=gene-D5F88_RS05745;Dbxref=GenBank:WP_000793484.1;Name=WP_000793484.1;Ontology_term=GO:0015129;gbkey=CDS;go_function=lactate transmembrane transporter activity|0015129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000793481.1;locus_tag=D5F88_RS05745;product=L-lactate MFS transporter;protein_id=WP_000793484.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 2530 3216 . + . ID=gene-D5F88_RS05750;Name=D5F88_RS05750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05750;old_locus_tag=D5F88_05760 NZ_QYTI01000048.1 Protein Homology CDS 2530 3216 . + 0 ID=cds-WP_016502784.1;Parent=gene-D5F88_RS05750;Dbxref=GenBank:WP_016502784.1;Name=WP_016502784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000569015.1;locus_tag=D5F88_RS05750;product=YwaF family protein;protein_id=WP_016502784.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 3396 4934 . + . ID=gene-D5F88_RS05755;Name=D5F88_RS05755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05755;old_locus_tag=D5F88_05765 NZ_QYTI01000048.1 Protein Homology CDS 3396 4934 . + 0 ID=cds-WP_086163304.1;Parent=gene-D5F88_RS05755;Dbxref=GenBank:WP_086163304.1;Name=WP_086163304.1;Ontology_term=GO:0009986;gbkey=CDS;go_component=cell surface|0009986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001043078.1;locus_tag=D5F88_RS05755;product=LPXTG cell wall anchor domain-containing protein;protein_id=WP_086163304.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 5111 6655 . + . ID=gene-D5F88_RS05760;Name=D5F88_RS05760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05760;old_locus_tag=D5F88_05770 NZ_QYTI01000048.1 Protein Homology CDS 5111 6655 . + 0 ID=cds-WP_016502786.1;Parent=gene-D5F88_RS05760;Dbxref=GenBank:WP_016502786.1;Name=WP_016502786.1;Ontology_term=GO:0006415,GO:0003924;gbkey=CDS;go_function=GTPase activity|0003924||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011681503.1;locus_tag=D5F88_RS05760;product=peptide chain release factor 3;protein_id=WP_016502786.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 6741 7121 . + . ID=gene-D5F88_RS05765;Name=D5F88_RS05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05765;old_locus_tag=D5F88_05775 NZ_QYTI01000048.1 Protein Homology CDS 6741 7121 . + 0 ID=cds-WP_016502787.1;Parent=gene-D5F88_RS05765;Dbxref=GenBank:WP_016502787.1;Name=WP_016502787.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502787.1;locus_tag=D5F88_RS05765;product=PH domain-containing protein;protein_id=WP_016502787.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 7242 7976 . + . ID=gene-D5F88_RS05770;Name=D5F88_RS05770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05770;old_locus_tag=D5F88_05780 NZ_QYTI01000048.1 Protein Homology CDS 7242 7976 . + 0 ID=cds-WP_000582850.1;Parent=gene-D5F88_RS05770;Dbxref=GenBank:WP_000582850.1;Name=WP_000582850.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480643.1;locus_tag=D5F88_RS05770;product=ATP-binding cassette domain-containing protein;protein_id=WP_000582850.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 7969 8631 . + . ID=gene-D5F88_RS05775;Name=D5F88_RS05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05775;old_locus_tag=D5F88_05785 NZ_QYTI01000048.1 Protein Homology CDS 7969 8631 . + 0 ID=cds-WP_000565395.1;Parent=gene-D5F88_RS05775;Dbxref=GenBank:WP_000565395.1;Name=WP_000565395.1;Ontology_term=GO:0048473,GO:0033232,GO:0042626;gbkey=CDS;go_function=ABC-type D-methionine transporter activity|0033232||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644638.1;locus_tag=D5F88_RS05775;product=methionine ABC transporter permease;protein_id=WP_000565395.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 8647 9477 . + . ID=gene-D5F88_RS05780;Name=D5F88_RS05780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05780;old_locus_tag=D5F88_05790 NZ_QYTI01000048.1 Protein Homology CDS 8647 9477 . + 0 ID=cds-WP_000735504.1;Parent=gene-D5F88_RS05780;Dbxref=GenBank:WP_000735504.1;Name=WP_000735504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000735506.1;locus_tag=D5F88_RS05780;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=WP_000735504.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 9712 11298 . + . ID=gene-D5F88_RS05785;Name=D5F88_RS05785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05785;old_locus_tag=D5F88_05795 NZ_QYTI01000048.1 Protein Homology CDS 9712 11298 . + 0 ID=cds-WP_016502789.1;Parent=gene-D5F88_RS05785;Dbxref=GenBank:WP_016502789.1;Name=WP_016502789.1;Ontology_term=GO:0003676,GO:0005524,GO:0016887;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000673092.1;locus_tag=D5F88_RS05785;product=DEAD/DEAH box helicase;protein_id=WP_016502789.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 11483 11749 . - . ID=gene-D5F88_RS05790;Name=D5F88_RS05790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05790;old_locus_tag=D5F88_05800 NZ_QYTI01000048.1 Protein Homology CDS 11483 11749 . - 0 ID=cds-WP_000598736.1;Parent=gene-D5F88_RS05790;Dbxref=GenBank:WP_000598736.1;Name=WP_000598736.1;Ontology_term=GO:0004518;gbkey=CDS;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000598735.1;locus_tag=D5F88_RS05790;product=GIY-YIG nuclease family protein;protein_id=WP_000598736.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 11742 12506 . - . ID=gene-D5F88_RS05795;Name=D5F88_RS05795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05795;old_locus_tag=D5F88_05805 NZ_QYTI01000048.1 Protein Homology CDS 11742 12506 . - 0 ID=cds-WP_000567423.1;Parent=gene-D5F88_RS05795;Dbxref=GenBank:WP_000567423.1;Name=WP_000567423.1;Ontology_term=GO:0032259,GO:0008170,GO:0008757,GO:0016430,GO:1904047;gbkey=CDS;go_function=N-methyltransferase activity|0008170||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,tRNA (adenine-N6)-methyltransferase activity|0016430||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000567423.1;locus_tag=D5F88_RS05795;product=tRNA1(Val) (adenine(37)-N6)-methyltransferase;protein_id=WP_000567423.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 12641 13381 . + . ID=gene-D5F88_RS05800;Name=D5F88_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05800;old_locus_tag=D5F88_05810 NZ_QYTI01000048.1 Protein Homology CDS 12641 13381 . + 0 ID=cds-WP_000500220.1;Parent=gene-D5F88_RS05800;Dbxref=GenBank:WP_000500220.1;Name=WP_000500220.1;Ontology_term=GO:0008654,GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650649.1;locus_tag=D5F88_RS05800;product=lysophospholipid acyltransferase family protein;protein_id=WP_000500220.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 13481 14134 . + . ID=gene-D5F88_RS05805;Name=D5F88_RS05805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05805;old_locus_tag=D5F88_05815 NZ_QYTI01000048.1 Protein Homology CDS 13481 14134 . + 0 ID=cds-WP_000461740.1;Parent=gene-D5F88_RS05805;Dbxref=GenBank:WP_000461740.1;Name=WP_000461740.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000461745.1;locus_tag=D5F88_RS05805;product=helix-hairpin-helix domain-containing protein;protein_id=WP_000461740.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 14118 16355 . + . ID=gene-D5F88_RS05810;Name=D5F88_RS05810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05810;old_locus_tag=D5F88_05820 NZ_QYTI01000048.1 Protein Homology CDS 14118 16355 . + 0 ID=cds-WP_124749194.1;Parent=gene-D5F88_RS05810;Dbxref=GenBank:WP_124749194.1;Name=WP_124749194.1;Ontology_term=GO:0009290,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=DNA import into cell involved in transformation|0009290||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000939917.1;locus_tag=D5F88_RS05810;product=DNA internalization-related competence protein ComEC/Rec2;protein_id=WP_124749194.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 16481 17290 . + . ID=gene-D5F88_RS05815;Name=D5F88_RS05815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05815;old_locus_tag=D5F88_05825 NZ_QYTI01000048.1 Protein Homology CDS 16481 17290 . + 0 ID=cds-WP_016502792.1;Parent=gene-D5F88_RS05815;Dbxref=GenBank:WP_016502792.1;Name=WP_016502792.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000153214.1;locus_tag=D5F88_RS05815;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_016502792.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 17301 18245 . + . ID=gene-D5F88_RS05820;Name=D5F88_RS05820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05820;old_locus_tag=D5F88_05830 NZ_QYTI01000048.1 Protein Homology CDS 17301 18245 . + 0 ID=cds-WP_000200830.1;Parent=gene-D5F88_RS05820;Dbxref=GenBank:WP_000200830.1;Name=WP_000200830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009754201.1;locus_tag=D5F88_RS05820;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000200830.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 18304 19296 . - . ID=gene-D5F88_RS05825;Name=D5F88_RS05825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05825;old_locus_tag=D5F88_05835 NZ_QYTI01000048.1 Protein Homology CDS 18304 19296 . - 0 ID=cds-WP_000800993.1;Parent=gene-D5F88_RS05825;Dbxref=GenBank:WP_000800993.1;Name=WP_000800993.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647477.1;locus_tag=D5F88_RS05825;product=alpha/beta hydrolase fold domain-containing protein;protein_id=WP_000800993.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 19471 20199 . + . ID=gene-D5F88_RS05830;Name=D5F88_RS05830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05830;old_locus_tag=D5F88_05840 NZ_QYTI01000048.1 Protein Homology CDS 19471 20199 . + 0 ID=cds-WP_016502794.1;Parent=gene-D5F88_RS05830;Dbxref=GenBank:WP_016502794.1;Name=WP_016502794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000468969.1;locus_tag=D5F88_RS05830;product=methyltransferase domain-containing protein;protein_id=WP_016502794.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 20253 21290 . + . ID=gene-D5F88_RS05835;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=D5F88_RS05835;old_locus_tag=D5F88_05845 NZ_QYTI01000048.1 Protein Homology CDS 20253 21290 . + 0 ID=cds-WP_000560292.1;Parent=gene-D5F88_RS05835;Dbxref=GenBank:WP_000560292.1;Name=WP_000560292.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=holA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000560289.1;locus_tag=D5F88_RS05835;product=DNA polymerase III subunit delta;protein_id=WP_000560292.1;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 21370 21978 . + . ID=gene-D5F88_RS05840;Name=sodA;gbkey=Gene;gene=sodA;gene_biotype=protein_coding;locus_tag=D5F88_RS05840;old_locus_tag=D5F88_05850 NZ_QYTI01000048.1 Protein Homology CDS 21370 21978 . + 0 ID=cds-WP_086163306.1;Parent=gene-D5F88_RS05840;Dbxref=GenBank:WP_086163306.1;Name=WP_086163306.1;Ontology_term=GO:0004784;gbkey=CDS;gene=sodA;go_function=superoxide dismutase activity|0004784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000974722.1;locus_tag=D5F88_RS05840;product=superoxide dismutase SodA;protein_id=WP_086163306.1;transl_table=11 NZ_QYTI01000048.1 RefSeq pseudogene 22316 22474 . + . ID=gene-D5F88_RS05845;Name=D5F88_RS05845;end_range=22474,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS05845;old_locus_tag=D5F88_05855;partial=true;pseudo=true NZ_QYTI01000048.1 Protein Homology CDS 22316 22474 . + 0 ID=cds-D5F88_RS05845;Parent=gene-D5F88_RS05845;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003723;end_range=22474,.;gbkey=CDS;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649835.1;locus_tag=D5F88_RS05845;partial=true;product=CAT RNA binding domain-containing protein;pseudo=true;transl_table=11 NZ_QYTI01000048.1 RefSeq gene 22494 23088 . - . ID=gene-D5F88_RS05850;Name=D5F88_RS05850;end_range=23088,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05850;old_locus_tag=D5F88_05860;partial=true NZ_QYTI01000048.1 Protein Homology CDS 22494 23088 . - 1 ID=cds-WP_124773285.1;Parent=gene-D5F88_RS05850;Dbxref=GenBank:WP_124773285.1;Name=WP_124773285.1;Ontology_term=GO:0004803;end_range=23088,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS05850;partial=true;product=IS3 family transposase;protein_id=WP_124773285.1;transl_table=11 ##sequence-region NZ_QYTI01000049.1 1 3250 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000049.1 RefSeq region 1 3250 . + . ID=NZ_QYTI01000049.1:1..3250;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000049.1 RefSeq gene 1 418 . + . ID=gene-D5F88_RS05855;Name=D5F88_RS05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05855;old_locus_tag=D5F88_05865;partial=true;start_range=.,1 NZ_QYTI01000049.1 Protein Homology CDS 1 418 . + 1 ID=cds-WP_142997440.1;Parent=gene-D5F88_RS05855;Dbxref=GenBank:WP_142997440.1;Name=WP_142997440.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS05855;partial=true;product=DDE-type integrase/transposase/recombinase;protein_id=WP_142997440.1;start_range=.,1;transl_table=11 NZ_QYTI01000049.1 RefSeq gene 446 1495 . - . ID=gene-D5F88_RS05860;Name=D5F88_RS05860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05860;old_locus_tag=D5F88_05870 NZ_QYTI01000049.1 Protein Homology CDS 446 1495 . - 0 ID=cds-WP_260424977.1;Parent=gene-D5F88_RS05860;Dbxref=GenBank:WP_260424977.1;Name=WP_260424977.1;Ontology_term=GO:0015074,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003034750.1;locus_tag=D5F88_RS05860;product=recombinase family protein;protein_id=WP_260424977.1;transl_table=11 NZ_QYTI01000049.1 RefSeq gene 1497 2924 . - . ID=gene-D5F88_RS05865;Name=D5F88_RS05865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05865;old_locus_tag=D5F88_05875 NZ_QYTI01000049.1 Protein Homology CDS 1497 2924 . - 0 ID=cds-WP_257638804.1;Parent=gene-D5F88_RS05865;Dbxref=GenBank:WP_257638804.1;Name=WP_257638804.1;Ontology_term=GO:0015074,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: protein motif:HMM:NF012464.6;locus_tag=D5F88_RS05865;product=recombinase family protein;protein_id=WP_257638804.1;transl_table=11 NZ_QYTI01000049.1 RefSeq gene 3017 3250 . + . ID=gene-D5F88_RS05875;Name=D5F88_RS05875;end_range=3250,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05875;old_locus_tag=D5F88_05885;partial=true NZ_QYTI01000049.1 Protein Homology CDS 3017 3250 . + 0 ID=cds-WP_142997437.1-2;Parent=gene-D5F88_RS05875;Dbxref=GenBank:WP_142997437.1;Name=WP_142997437.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=3250,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS05875;partial=true;product=transposase;protein_id=WP_142997437.1;transl_table=11 ##sequence-region NZ_QYTI01000005.1 1 3002 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000005.1 RefSeq region 1 3002 . + . ID=NZ_QYTI01000005.1:1..3002;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000005.1 RefSeq gene 1 2378 . - . ID=gene-D5F88_RS01445;Name=D5F88_RS01445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01445;old_locus_tag=D5F88_01450;partial=true;start_range=.,1 NZ_QYTI01000005.1 Protein Homology CDS 1 2378 . - 0 ID=cds-WP_124773161.1;Parent=gene-D5F88_RS01445;Dbxref=GenBank:WP_124773161.1;Name=WP_124773161.1;Ontology_term=GO:0004040;gbkey=CDS;go_function=amidase activity|0004040||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647570.1;locus_tag=D5F88_RS01445;partial=true;product=glucosaminidase domain-containing protein;protein_id=WP_124773161.1;start_range=.,1;transl_table=11 NZ_QYTI01000005.1 RefSeq pseudogene 2369 3002 . - . ID=gene-D5F88_RS01450;Name=D5F88_RS01450;end_range=3002,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS01450;old_locus_tag=D5F88_01455;partial=true;pseudo=true NZ_QYTI01000005.1 Protein Homology CDS 2369 3002 . - 1 ID=cds-D5F88_RS01450;Parent=gene-D5F88_RS01450;Note=internal stop%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=3002,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000668942.1;locus_tag=D5F88_RS01450;partial=true;product=distal tail protein Dit;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000050.1 1 35142 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000050.1 RefSeq region 1 35142 . + . ID=NZ_QYTI01000050.1:1..35142;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000050.1 RefSeq gene 1 797 . + . ID=gene-D5F88_RS05880;Name=D5F88_RS05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05880;old_locus_tag=D5F88_05890;partial=true;start_range=.,1 NZ_QYTI01000050.1 Protein Homology CDS 1 797 . + 2 ID=cds-WP_124773287.1;Parent=gene-D5F88_RS05880;Dbxref=GenBank:WP_124773287.1;Name=WP_124773287.1;Ontology_term=GO:0009117,GO:0043094,GO:0000287,GO:0008973;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,phosphopentomutase activity|0008973||IEA;go_process=nucleotide metabolic process|0009117||IEA,metabolic compound salvage|0043094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019318858.1;locus_tag=D5F88_RS05880;partial=true;product=phosphopentomutase;protein_id=WP_124773287.1;start_range=.,1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 848 1255 . + . ID=gene-D5F88_RS05885;Name=arsC;gbkey=Gene;gene=arsC;gene_biotype=protein_coding;locus_tag=D5F88_RS05885;old_locus_tag=D5F88_05895 NZ_QYTI01000050.1 Protein Homology CDS 848 1255 . + 0 ID=cds-WP_016502947.1;Parent=gene-D5F88_RS05885;Dbxref=GenBank:WP_016502947.1;Name=WP_016502947.1;Note=This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite%2C after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell%2C providing resistance.;Ontology_term=GO:0046685,GO:0008794;gbkey=CDS;gene=arsC;go_function=arsenate reductase (glutaredoxin) activity|0008794||IEA;go_process=response to arsenic-containing substance|0046685||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000416958.1;locus_tag=D5F88_RS05885;product=arsenate reductase (glutaredoxin);protein_id=WP_016502947.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 1294 2103 . + . ID=gene-D5F88_RS05890;Name=D5F88_RS05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05890;old_locus_tag=D5F88_05900 NZ_QYTI01000050.1 Protein Homology CDS 1294 2103 . + 0 ID=cds-WP_000173383.1;Parent=gene-D5F88_RS05890;Dbxref=GenBank:WP_000173383.1;Name=WP_000173383.1;Ontology_term=GO:0009116,GO:0004731;gbkey=CDS;go_function=purine-nucleoside phosphorylase activity|0004731||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647702.1;locus_tag=D5F88_RS05890;product=purine-nucleoside phosphorylase;protein_id=WP_000173383.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 2105 3361 . + . ID=gene-D5F88_RS05895;Name=D5F88_RS05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05895;old_locus_tag=D5F88_05905 NZ_QYTI01000050.1 Protein Homology CDS 2105 3361 . + 0 ID=cds-WP_086163384.1;Parent=gene-D5F88_RS05895;Dbxref=GenBank:WP_086163384.1;Name=WP_086163384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000254664.1;locus_tag=D5F88_RS05895;product=chloride channel protein;protein_id=WP_086163384.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 3345 4055 . + . ID=gene-D5F88_RS05900;Name=deoD;gbkey=Gene;gene=deoD;gene_biotype=protein_coding;locus_tag=D5F88_RS05900;old_locus_tag=D5F88_05910 NZ_QYTI01000050.1 Protein Homology CDS 3345 4055 . + 0 ID=cds-WP_124773289.1;Parent=gene-D5F88_RS05900;Dbxref=GenBank:WP_124773289.1;Name=WP_124773289.1;Ontology_term=GO:0006139,GO:0004731;gbkey=CDS;gene=deoD;go_function=purine-nucleoside phosphorylase activity|0004731||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000022115.1;locus_tag=D5F88_RS05900;product=purine-nucleoside phosphorylase;protein_id=WP_124773289.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 4064 4831 . + . ID=gene-D5F88_RS05905;Name=D5F88_RS05905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05905;old_locus_tag=D5F88_05915 NZ_QYTI01000050.1 Protein Homology CDS 4064 4831 . + 0 ID=cds-WP_086163383.1;Parent=gene-D5F88_RS05905;Dbxref=GenBank:WP_086163383.1;Name=WP_086163383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000129264.1;locus_tag=D5F88_RS05905;product=LytR family transcriptional regulator;protein_id=WP_086163383.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 4856 5779 . - . ID=gene-D5F88_RS05910;Name=D5F88_RS05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05910;old_locus_tag=D5F88_05920 NZ_QYTI01000050.1 Protein Homology CDS 4856 5779 . - 0 ID=cds-WP_001222596.1;Parent=gene-D5F88_RS05910;Dbxref=GenBank:WP_001222596.1;Name=WP_001222596.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502945.1;locus_tag=D5F88_RS05910;product=LysR family transcriptional regulator;protein_id=WP_001222596.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 5969 7426 . + . ID=gene-D5F88_RS05915;Name=cpsA;gbkey=Gene;gene=cpsA;gene_biotype=protein_coding;locus_tag=D5F88_RS05915;old_locus_tag=D5F88_05925 NZ_QYTI01000050.1 Protein Homology CDS 5969 7426 . + 0 ID=cds-WP_016502944.1;Parent=gene-D5F88_RS05915;Dbxref=GenBank:WP_016502944.1;Name=WP_016502944.1;gbkey=CDS;gene=cpsA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000065004.1;locus_tag=D5F88_RS05915;product=LCP family glycopolymer transferase CpsA;protein_id=WP_016502944.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 7432 8163 . + . ID=gene-D5F88_RS05920;Name=cps4B;gbkey=Gene;gene=cps4B;gene_biotype=protein_coding;locus_tag=D5F88_RS05920;old_locus_tag=D5F88_05930 NZ_QYTI01000050.1 Protein Homology CDS 7432 8163 . + 0 ID=cds-WP_000565383.1;Parent=gene-D5F88_RS05920;Dbxref=GenBank:WP_000565383.1;Name=WP_000565383.1;gbkey=CDS;gene=cps4B;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647336.1;locus_tag=D5F88_RS05920;product=capsular polysaccharide biosynthesis protein Cps4B;protein_id=WP_000565383.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 8172 8864 . + . ID=gene-D5F88_RS05925;Name=D5F88_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05925;old_locus_tag=D5F88_05935 NZ_QYTI01000050.1 Protein Homology CDS 8172 8864 . + 0 ID=cds-WP_001033073.1;Parent=gene-D5F88_RS05925;Dbxref=GenBank:WP_001033073.1;Name=WP_001033073.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285282.1;locus_tag=D5F88_RS05925;product=Wzz/FepE/Etk N-terminal domain-containing protein;protein_id=WP_001033073.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 8875 9573 . + . ID=gene-D5F88_RS05930;Name=D5F88_RS05930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05930;old_locus_tag=D5F88_05940 NZ_QYTI01000050.1 Protein Homology CDS 8875 9573 . + 0 ID=cds-WP_000197412.1;Parent=gene-D5F88_RS05930;Dbxref=GenBank:WP_000197412.1;Name=WP_000197412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000197400.1;locus_tag=D5F88_RS05930;product=tyrosine-protein kinase;protein_id=WP_000197412.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 9586 10974 . + . ID=gene-D5F88_RS05935;Name=D5F88_RS05935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05935;old_locus_tag=D5F88_05945 NZ_QYTI01000050.1 Protein Homology CDS 9586 10974 . + 0 ID=cds-WP_000659580.1;Parent=gene-D5F88_RS05935;Dbxref=GenBank:WP_000659580.1;Name=WP_000659580.1;Ontology_term=GO:0016740,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000659574.1;locus_tag=D5F88_RS05935;product=sugar transferase;protein_id=WP_000659580.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 10998 11447 . + . ID=gene-D5F88_RS05940;Name=pssD;gbkey=Gene;gene=pssD;gene_biotype=protein_coding;locus_tag=D5F88_RS05940;old_locus_tag=D5F88_05950 NZ_QYTI01000050.1 Protein Homology CDS 10998 11447 . + 0 ID=cds-WP_000686635.1;Parent=gene-D5F88_RS05940;Dbxref=GenBank:WP_000686635.1;Name=WP_000686635.1;Ontology_term=GO:0016740;gbkey=CDS;gene=pssD;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650132.1;locus_tag=D5F88_RS05940;product=PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase;protein_id=WP_000686635.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 11447 11938 . + . ID=gene-D5F88_RS05945;Name=D5F88_RS05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05945;old_locus_tag=D5F88_05955 NZ_QYTI01000050.1 Protein Homology CDS 11447 11938 . + 0 ID=cds-WP_086163382.1;Parent=gene-D5F88_RS05945;Dbxref=GenBank:WP_086163382.1;Name=WP_086163382.1;Ontology_term=GO:0016758;gbkey=CDS;go_function=hexosyltransferase activity|0016758||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480844.1;locus_tag=D5F88_RS05945;product=glycosyltransferase;protein_id=WP_086163382.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 11925 13022 . + . ID=gene-D5F88_RS05950;Name=D5F88_RS05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05950;old_locus_tag=D5F88_05960 NZ_QYTI01000050.1 Protein Homology CDS 11925 13022 . + 0 ID=cds-WP_086163381.1;Parent=gene-D5F88_RS05950;Dbxref=GenBank:WP_086163381.1;Name=WP_086163381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000700587.1;locus_tag=D5F88_RS05950;product=capsular biosynthesis protein CpsH;protein_id=WP_086163381.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 12979 13977 . + . ID=gene-D5F88_RS05955;Name=D5F88_RS05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05955;old_locus_tag=D5F88_05965 NZ_QYTI01000050.1 Protein Homology CDS 12979 13977 . + 0 ID=cds-WP_086163380.1;Parent=gene-D5F88_RS05955;Dbxref=GenBank:WP_086163380.1;Name=WP_086163380.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000639909.1;locus_tag=D5F88_RS05955;product=glycosyltransferase family 2 protein;protein_id=WP_086163380.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 13989 14717 . + . ID=gene-D5F88_RS05960;Name=D5F88_RS05960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05960;old_locus_tag=D5F88_05970 NZ_QYTI01000050.1 Protein Homology CDS 13989 14717 . + 0 ID=cds-WP_180383577.1;Parent=gene-D5F88_RS05960;Dbxref=GenBank:WP_180383577.1;Name=WP_180383577.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000612460.1;locus_tag=D5F88_RS05960;product=glycosyltransferase family 32 protein;protein_id=WP_180383577.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 14769 15719 . + . ID=gene-D5F88_RS05965;Name=D5F88_RS05965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05965;old_locus_tag=D5F88_05975 NZ_QYTI01000050.1 Protein Homology CDS 14769 15719 . + 0 ID=cds-WP_086163378.1;Parent=gene-D5F88_RS05965;Dbxref=GenBank:WP_086163378.1;Name=WP_086163378.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000427785.1;locus_tag=D5F88_RS05965;product=glycosyltransferase family 2 protein;protein_id=WP_086163378.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 15739 16674 . + . ID=gene-D5F88_RS05970;Name=D5F88_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05970;old_locus_tag=D5F88_05980 NZ_QYTI01000050.1 Protein Homology CDS 15739 16674 . + 0 ID=cds-WP_086163377.1;Parent=gene-D5F88_RS05970;Dbxref=GenBank:WP_086163377.1;Name=WP_086163377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000725508.1;locus_tag=D5F88_RS05970;product=glycosyltransferase family 52;protein_id=WP_086163377.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 16671 18071 . + . ID=gene-D5F88_RS05975;Name=D5F88_RS05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05975;old_locus_tag=D5F88_05985 NZ_QYTI01000050.1 Protein Homology CDS 16671 18071 . + 0 ID=cds-WP_086163376.1;Parent=gene-D5F88_RS05975;Dbxref=GenBank:WP_086163376.1;Name=WP_086163376.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001093048.1;locus_tag=D5F88_RS05975;product=oligosaccharide flippase family protein;protein_id=WP_086163376.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 18071 19096 . + . ID=gene-D5F88_RS05980;Name=neuB;gbkey=Gene;gene=neuB;gene_biotype=protein_coding;locus_tag=D5F88_RS05980;old_locus_tag=D5F88_05990 NZ_QYTI01000050.1 Protein Homology CDS 18071 19096 . + 0 ID=cds-WP_124759421.1;Parent=gene-D5F88_RS05980;Dbxref=GenBank:WP_124759421.1;Name=WP_124759421.1;Ontology_term=GO:0016051,GO:0003824;gbkey=CDS;gene=neuB;go_function=catalytic activity|0003824||IEA;go_process=carbohydrate biosynthetic process|0016051||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000262516.1;locus_tag=D5F88_RS05980;product=N-acetylneuraminate synthase;protein_id=WP_124759421.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 19172 20326 . + . ID=gene-D5F88_RS05985;Name=neuC;gbkey=Gene;gene=neuC;gene_biotype=protein_coding;locus_tag=D5F88_RS05985;old_locus_tag=D5F88_05995 NZ_QYTI01000050.1 Protein Homology CDS 19172 20326 . + 0 ID=cds-WP_000717637.1;Parent=gene-D5F88_RS05985;Dbxref=GenBank:WP_000717637.1;Name=WP_000717637.1;Ontology_term=GO:0006047,GO:0008761;gbkey=CDS;gene=neuC;go_function=UDP-N-acetylglucosamine 2-epimerase activity|0008761||IEA;go_process=UDP-N-acetylglucosamine metabolic process|0006047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644210.1;locus_tag=D5F88_RS05985;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_000717637.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 20323 20952 . + . ID=gene-D5F88_RS05990;Name=D5F88_RS05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS05990;old_locus_tag=D5F88_06000 NZ_QYTI01000050.1 Protein Homology CDS 20323 20952 . + 0 ID=cds-WP_000727601.1;Parent=gene-D5F88_RS05990;Dbxref=GenBank:WP_000727601.1;Name=WP_000727601.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646802.1;locus_tag=D5F88_RS05990;product=acetyltransferase;protein_id=WP_000727601.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 20963 22204 . + . ID=gene-D5F88_RS05995;Name=neuA;gbkey=Gene;gene=neuA;gene_biotype=protein_coding;locus_tag=D5F88_RS05995;old_locus_tag=D5F88_06005 NZ_QYTI01000050.1 Protein Homology CDS 20963 22204 . + 0 ID=cds-WP_086163375.1;Parent=gene-D5F88_RS05995;Dbxref=GenBank:WP_086163375.1;Name=WP_086163375.1;gbkey=CDS;gene=neuA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000802346.1;locus_tag=D5F88_RS05995;product=N-acylneuraminate cytidylyltransferase;protein_id=WP_086163375.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 22318 22803 . + . ID=gene-D5F88_RS06000;Name=D5F88_RS06000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06000;old_locus_tag=D5F88_06010 NZ_QYTI01000050.1 Protein Homology CDS 22318 22803 . + 0 ID=cds-WP_124773291.1;Parent=gene-D5F88_RS06000;Dbxref=GenBank:WP_124773291.1;Name=WP_124773291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644630.1;locus_tag=D5F88_RS06000;product=hypothetical protein;protein_id=WP_124773291.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 22902 23555 . + . ID=gene-D5F88_RS06005;Name=D5F88_RS06005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06005;old_locus_tag=D5F88_06015 NZ_QYTI01000050.1 Protein Homology CDS 22902 23555 . + 0 ID=cds-WP_000682955.1;Parent=gene-D5F88_RS06005;Dbxref=GenBank:WP_000682955.1;Name=WP_000682955.1;Ontology_term=GO:0006284,GO:0004844;gbkey=CDS;go_function=uracil DNA N-glycosylase activity|0004844||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643623.1;locus_tag=D5F88_RS06005;product=uracil-DNA glycosylase;protein_id=WP_000682955.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 23621 24259 . - . ID=gene-D5F88_RS06010;Name=plsY;gbkey=Gene;gene=plsY;gene_biotype=protein_coding;locus_tag=D5F88_RS06010;old_locus_tag=D5F88_06020 NZ_QYTI01000050.1 Protein Homology CDS 23621 24259 . - 0 ID=cds-WP_086163374.1;Parent=gene-D5F88_RS06010;Dbxref=GenBank:WP_086163374.1;Name=WP_086163374.1;Ontology_term=GO:0006654,GO:0008374,GO:0005886;gbkey=CDS;gene=plsY;go_component=plasma membrane|0005886||IEA;go_function=O-acyltransferase activity|0008374||IEA;go_process=phosphatidic acid biosynthetic process|0006654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632050.1;locus_tag=D5F88_RS06010;product=glycerol-3-phosphate 1-O-acyltransferase PlsY;protein_id=WP_086163374.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 24373 26322 . + . ID=gene-D5F88_RS06015;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=D5F88_RS06015;old_locus_tag=D5F88_06025 NZ_QYTI01000050.1 Protein Homology CDS 24373 26322 . + 0 ID=cds-WP_180383574.1;Parent=gene-D5F88_RS06015;Dbxref=GenBank:WP_180383574.1;Name=WP_180383574.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=parE;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632049.1;locus_tag=D5F88_RS06015;product=DNA topoisomerase IV subunit B;protein_id=WP_180383574.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 26456 28915 . + . ID=gene-D5F88_RS06020;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=D5F88_RS06020;old_locus_tag=D5F88_06030 NZ_QYTI01000050.1 Protein Homology CDS 26456 28915 . + 0 ID=cds-WP_000065534.1;Parent=gene-D5F88_RS06020;Dbxref=GenBank:WP_000065534.1;Name=WP_000065534.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=parC;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000065524.1;locus_tag=D5F88_RS06020;product=DNA topoisomerase IV subunit A;protein_id=WP_000065534.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 29029 30051 . + . ID=gene-D5F88_RS06025;Name=D5F88_RS06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06025;old_locus_tag=D5F88_06035 NZ_QYTI01000050.1 Protein Homology CDS 29029 30051 . + 0 ID=cds-WP_086163372.1;Parent=gene-D5F88_RS06025;Dbxref=GenBank:WP_086163372.1;Name=WP_086163372.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012961903.1;locus_tag=D5F88_RS06025;product=branched-chain amino acid aminotransferase;protein_id=WP_086163372.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 30135 30365 . + . ID=gene-D5F88_RS06030;Name=D5F88_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06030;old_locus_tag=D5F88_06040 NZ_QYTI01000050.1 Protein Homology CDS 30135 30365 . + 0 ID=cds-WP_000037098.1;Parent=gene-D5F88_RS06030;Dbxref=GenBank:WP_000037098.1;Name=WP_000037098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001870505.1;locus_tag=D5F88_RS06030;product=DUF2969 domain-containing protein;protein_id=WP_000037098.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 30426 30506 . + . ID=gene-D5F88_RS06035;Name=D5F88_RS06035;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS06035;old_locus_tag=D5F88_06045 NZ_QYTI01000050.1 tRNAscan-SE tRNA 30426 30506 . + . ID=rna-D5F88_RS06035;Parent=gene-D5F88_RS06035;anticodon=(pos:30460..30462);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS06035;product=tRNA-Tyr NZ_QYTI01000050.1 tRNAscan-SE exon 30426 30506 . + . ID=exon-D5F88_RS06035-1;Parent=rna-D5F88_RS06035;anticodon=(pos:30460..30462);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS06035;product=tRNA-Tyr NZ_QYTI01000050.1 RefSeq gene 30512 30583 . + . ID=gene-D5F88_RS06040;Name=D5F88_RS06040;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS06040;old_locus_tag=D5F88_06050 NZ_QYTI01000050.1 tRNAscan-SE tRNA 30512 30583 . + . ID=rna-D5F88_RS06040;Parent=gene-D5F88_RS06040;anticodon=(pos:30544..30546);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS06040;product=tRNA-Gln NZ_QYTI01000050.1 tRNAscan-SE exon 30512 30583 . + . ID=exon-D5F88_RS06040-1;Parent=rna-D5F88_RS06040;anticodon=(pos:30544..30546);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS06040;product=tRNA-Gln NZ_QYTI01000050.1 RefSeq gene 30709 31911 . + . ID=gene-D5F88_RS06045;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=D5F88_RS06045;old_locus_tag=D5F88_06055 NZ_QYTI01000050.1 Protein Homology CDS 30709 31911 . + 0 ID=cds-WP_001001614.1;Parent=gene-D5F88_RS06045;Dbxref=GenBank:WP_001001614.1;Name=WP_001001614.1;Ontology_term=GO:0003676;gbkey=CDS;gene=rpsA;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002997242.1;locus_tag=D5F88_RS06045;product=30S ribosomal protein S1;protein_id=WP_001001614.1;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 31984 32055 . + . ID=gene-D5F88_RS06050;Name=D5F88_RS06050;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS06050;old_locus_tag=D5F88_06060 NZ_QYTI01000050.1 tRNAscan-SE tRNA 31984 32055 . + . ID=rna-D5F88_RS06050;Parent=gene-D5F88_RS06050;anticodon=(pos:32017..32019);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS06050;product=tRNA-Arg NZ_QYTI01000050.1 tRNAscan-SE exon 31984 32055 . + . ID=exon-D5F88_RS06050-1;Parent=rna-D5F88_RS06050;anticodon=(pos:32017..32019);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS06050;product=tRNA-Arg NZ_QYTI01000050.1 RefSeq pseudogene 32140 33169 . - . ID=gene-D5F88_RS06055;Name=D5F88_RS06055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06055;old_locus_tag=D5F88_06065;pseudo=true NZ_QYTI01000050.1 Protein Homology CDS 32140 33169 . - 0 ID=cds-D5F88_RS06055;Parent=gene-D5F88_RS06055;Note=frameshifted%3B internal stop;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000323187.1;locus_tag=D5F88_RS06055;product=site-specific integrase;pseudo=true;transl_table=11 NZ_QYTI01000050.1 RefSeq gene 33297 33905 . - . ID=gene-D5F88_RS06065;Name=D5F88_RS06065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06065;old_locus_tag=D5F88_06075 NZ_QYTI01000050.1 Protein Homology CDS 33297 33905 . - 0 ID=cds-WP_086163370.1;Parent=gene-D5F88_RS06065;Dbxref=GenBank:WP_086163370.1;Name=WP_086163370.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000438039.1;locus_tag=D5F88_RS06065;product=CD20-like domain-containing protein;protein_id=WP_086163370.1;transl_table=11 NZ_QYTI01000050.1 RefSeq pseudogene 33960 34659 . - . ID=gene-D5F88_RS06070;Name=D5F88_RS06070;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06070;old_locus_tag=D5F88_06080;pseudo=true NZ_QYTI01000050.1 Protein Homology CDS 33960 34659 . - 0 ID=cds-D5F88_RS06070;Parent=gene-D5F88_RS06070;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013794263.1;locus_tag=D5F88_RS06070;product=XRE family transcriptional regulator;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000051.1 1 28511 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000051.1 RefSeq region 1 28511 . + . ID=NZ_QYTI01000051.1:1..28511;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000051.1 RefSeq gene 1 350 . + . ID=gene-D5F88_RS06085;Name=D5F88_RS06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06085;old_locus_tag=D5F88_06095;partial=true;start_range=.,1 NZ_QYTI01000051.1 Protein Homology CDS 1 350 . + 2 ID=cds-WP_142996892.1;Parent=gene-D5F88_RS06085;Dbxref=GenBank:WP_142996892.1;Name=WP_142996892.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS06085;partial=true;product=integrase core domain-containing protein;protein_id=WP_142996892.1;start_range=.,1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 487 2721 . - . ID=gene-D5F88_RS06090;Name=D5F88_RS06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06090;old_locus_tag=D5F88_06100 NZ_QYTI01000051.1 Protein Homology CDS 487 2721 . - 0 ID=cds-WP_086163234.1;Parent=gene-D5F88_RS06090;Dbxref=GenBank:WP_086163234.1;Name=WP_086163234.1;Ontology_term=GO:0005524,GO:0015662,GO:0016887,GO:0019829,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,P-type ion transporter activity|0015662||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000013403.1;locus_tag=D5F88_RS06090;product=heavy metal translocating P-type ATPase;protein_id=WP_086163234.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 2734 3150 . - . ID=gene-D5F88_RS06095;Name=D5F88_RS06095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06095;old_locus_tag=D5F88_06105 NZ_QYTI01000051.1 Protein Homology CDS 2734 3150 . - 0 ID=cds-WP_016502544.1;Parent=gene-D5F88_RS06095;Dbxref=GenBank:WP_016502544.1;Name=WP_016502544.1;Ontology_term=GO:0006355,GO:0006825;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA,copper ion transport|0006825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647024.1;locus_tag=D5F88_RS06095;product=CopY/TcrY family copper transport repressor;protein_id=WP_016502544.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 3313 4317 . + . ID=gene-D5F88_RS06100;Name=D5F88_RS06100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06100;old_locus_tag=D5F88_06110 NZ_QYTI01000051.1 Protein Homology CDS 3313 4317 . + 0 ID=cds-WP_000804611.1;Parent=gene-D5F88_RS06100;Dbxref=GenBank:WP_000804611.1;Name=WP_000804611.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649252.1;locus_tag=D5F88_RS06100;product=alpha/beta hydrolase;protein_id=WP_000804611.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 4402 4752 . - . ID=gene-D5F88_RS06105;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=D5F88_RS06105;old_locus_tag=D5F88_06115 NZ_QYTI01000051.1 Protein Homology CDS 4402 4752 . - 0 ID=cds-WP_001273670.1;Parent=gene-D5F88_RS06105;Dbxref=GenBank:WP_001273670.1;Name=WP_001273670.1;Ontology_term=GO:0006364;gbkey=CDS;gene=rbfA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001273670.1;locus_tag=D5F88_RS06105;product=30S ribosome-binding factor RbfA;protein_id=WP_001273670.1;transl_table=11 NZ_QYTI01000051.1 RefSeq pseudogene 4861 7368 . - . ID=gene-D5F88_RS06110;Name=infB;end_range=7368,.;gbkey=Gene;gene=infB;gene_biotype=pseudogene;locus_tag=D5F88_RS06110;old_locus_tag=D5F88_06120;partial=true;pseudo=true NZ_QYTI01000051.1 Protein Homology CDS 4861 7368 . - 0 ID=cds-D5F88_RS06110;Parent=gene-D5F88_RS06110;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006413,GO:0003743,GO:0003924,GO:0005525,GO:0005737;end_range=7368,.;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018381344.1;locus_tag=D5F88_RS06110;partial=true;product=translation initiation factor IF-2;pseudo=true;transl_table=11 NZ_QYTI01000051.1 RefSeq pseudogene 7492 7644 . - . ID=gene-D5F88_RS11945;Name=D5F88_RS11945;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11945;partial=true;pseudo=true;start_range=.,7492 NZ_QYTI01000051.1 Protein Homology CDS 7492 7644 . - 0 ID=cds-D5F88_RS11945;Parent=gene-D5F88_RS11945;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012767488.1;locus_tag=D5F88_RS11945;partial=true;product=translation initiation factor IF-2 N-terminal domain-containing protein;pseudo=true;start_range=.,7492;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 7664 7966 . - . ID=gene-D5F88_RS06115;Name=D5F88_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06115;old_locus_tag=D5F88_06125 NZ_QYTI01000051.1 Protein Homology CDS 7664 7966 . - 0 ID=cds-WP_001065560.1;Parent=gene-D5F88_RS06115;Dbxref=GenBank:WP_001065560.1;Name=WP_001065560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001065560.1;locus_tag=D5F88_RS06115;product=YlxQ-related RNA-binding protein;protein_id=WP_001065560.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 7959 8255 . - . ID=gene-D5F88_RS06120;Name=rnpM;gbkey=Gene;gene=rnpM;gene_biotype=protein_coding;gene_synonym=ylxR;locus_tag=D5F88_RS06120;old_locus_tag=D5F88_06130 NZ_QYTI01000051.1 Protein Homology CDS 7959 8255 . - 0 ID=cds-WP_001140526.1;Parent=gene-D5F88_RS06120;Dbxref=GenBank:WP_001140526.1;Name=WP_001140526.1;gbkey=CDS;gene=rnpM;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006531117.1;locus_tag=D5F88_RS06120;product=RNase P modulator RnpM;protein_id=WP_001140526.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 8277 9428 . - . ID=gene-D5F88_RS06125;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=D5F88_RS06125;old_locus_tag=D5F88_06135 NZ_QYTI01000051.1 Protein Homology CDS 8277 9428 . - 0 ID=cds-WP_000032295.1;Parent=gene-D5F88_RS06125;Dbxref=GenBank:WP_000032295.1;Name=WP_000032295.1;Ontology_term=GO:0006353,GO:0003723;gbkey=CDS;gene=nusA;go_function=RNA binding|0003723||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000032296.1;locus_tag=D5F88_RS06125;product=transcription termination factor NusA;protein_id=WP_000032295.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 9464 9940 . - . ID=gene-D5F88_RS06130;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=D5F88_RS06130;old_locus_tag=D5F88_06140 NZ_QYTI01000051.1 Protein Homology CDS 9464 9940 . - 0 ID=cds-WP_047210184.1;Parent=gene-D5F88_RS06130;Dbxref=GenBank:WP_047210184.1;Name=WP_047210184.1;Ontology_term=GO:0042274;gbkey=CDS;gene=rimP;go_process=ribosomal small subunit biogenesis|0042274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018366632.1;locus_tag=D5F88_RS06130;product=ribosome maturation factor RimP;protein_id=WP_047210184.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 10301 10387 . - . ID=gene-D5F88_RS06135;Name=D5F88_RS06135;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS06135;old_locus_tag=D5F88_06145 NZ_QYTI01000051.1 tRNAscan-SE tRNA 10301 10387 . - . ID=rna-D5F88_RS06135;Parent=gene-D5F88_RS06135;anticodon=(pos:complement(10351..10353));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS06135;product=tRNA-Ser NZ_QYTI01000051.1 tRNAscan-SE exon 10301 10387 . - . ID=exon-D5F88_RS06135-1;Parent=rna-D5F88_RS06135;anticodon=(pos:complement(10351..10353));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS06135;product=tRNA-Ser NZ_QYTI01000051.1 RefSeq gene 10431 11066 . - . ID=gene-D5F88_RS06140;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=D5F88_RS06140;old_locus_tag=D5F88_06150 NZ_QYTI01000051.1 Protein Homology CDS 10431 11066 . - 0 ID=cds-WP_086163233.1;Parent=gene-D5F88_RS06140;Dbxref=GenBank:WP_086163233.1;Name=WP_086163233.1;Ontology_term=GO:0006400,GO:0008176;gbkey=CDS;gene=trmB;go_function=tRNA (guanine(46)-N7)-methyltransferase activity|0008176||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001266023.1;locus_tag=D5F88_RS06140;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_086163233.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 11056 11856 . - . ID=gene-D5F88_RS06145;Name=ccrZ;gbkey=Gene;gene=ccrZ;gene_biotype=protein_coding;locus_tag=D5F88_RS06145;old_locus_tag=D5F88_06155 NZ_QYTI01000051.1 Protein Homology CDS 11056 11856 . - 0 ID=cds-WP_000155919.1;Parent=gene-D5F88_RS06145;Dbxref=GenBank:WP_000155919.1;Name=WP_000155919.1;Ontology_term=GO:0006270,GO:0051726,GO:0004747,GO:0016773,GO:0019200;gbkey=CDS;gene=ccrZ;go_function=ribokinase activity|0004747||IEA,phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA,carbohydrate kinase activity|0019200||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of cell cycle|0051726||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000155919.1;locus_tag=D5F88_RS06145;product=cell cycle regulator CcrZ;protein_id=WP_000155919.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 11914 12948 . - . ID=gene-D5F88_RS06150;Name=D5F88_RS06150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06150;old_locus_tag=D5F88_06160 NZ_QYTI01000051.1 Protein Homology CDS 11914 12948 . - 0 ID=cds-WP_016502539.1;Parent=gene-D5F88_RS06150;Dbxref=GenBank:WP_016502539.1;Name=WP_016502539.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000732713.1;locus_tag=D5F88_RS06150;product=ABC transporter permease;protein_id=WP_016502539.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 12950 13675 . - . ID=gene-D5F88_RS06155;Name=D5F88_RS06155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06155;old_locus_tag=D5F88_06165 NZ_QYTI01000051.1 Protein Homology CDS 12950 13675 . - 0 ID=cds-WP_000912307.1;Parent=gene-D5F88_RS06155;Dbxref=GenBank:WP_000912307.1;Name=WP_000912307.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647293.1;locus_tag=D5F88_RS06155;product=ABC transporter ATP-binding protein;protein_id=WP_000912307.1;transl_table=11 NZ_QYTI01000051.1 RefSeq pseudogene 13747 13932 . + . ID=gene-D5F88_RS06160;Name=D5F88_RS06160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06160;old_locus_tag=D5F88_06170;pseudo=true NZ_QYTI01000051.1 Protein Homology CDS 13747 13932 . + 0 ID=cds-D5F88_RS06160;Parent=gene-D5F88_RS06160;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000368100.1;locus_tag=D5F88_RS06160;product=hypothetical protein;pseudo=true;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 13984 14487 . - . ID=gene-D5F88_RS06165;Name=D5F88_RS06165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06165;old_locus_tag=D5F88_06175 NZ_QYTI01000051.1 Protein Homology CDS 13984 14487 . - 0 ID=cds-WP_000773456.1;Parent=gene-D5F88_RS06165;Dbxref=GenBank:WP_000773456.1;Name=WP_000773456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285166.1;locus_tag=D5F88_RS06165;product=hypothetical protein;protein_id=WP_000773456.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 14823 15242 . + . ID=gene-D5F88_RS06170;Name=D5F88_RS06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06170;old_locus_tag=D5F88_06180 NZ_QYTI01000051.1 Protein Homology CDS 14823 15242 . + 0 ID=cds-WP_000368098.1;Parent=gene-D5F88_RS06170;Dbxref=GenBank:WP_000368098.1;Name=WP_000368098.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631690.1;locus_tag=D5F88_RS06170;product=HIT family protein;protein_id=WP_000368098.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 15239 15535 . + . ID=gene-D5F88_RS06175;Name=D5F88_RS06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06175;old_locus_tag=D5F88_06185 NZ_QYTI01000051.1 Protein Homology CDS 15239 15535 . + 0 ID=cds-WP_000690175.1;Parent=gene-D5F88_RS06175;Dbxref=GenBank:WP_000690175.1;Name=WP_000690175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647456.1;locus_tag=D5F88_RS06175;product=hypothetical protein;protein_id=WP_000690175.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 15599 16906 . - . ID=gene-D5F88_RS06180;Name=lytR;gbkey=Gene;gene=lytR;gene_biotype=protein_coding;gene_synonym=brpA;locus_tag=D5F88_RS06180;old_locus_tag=D5F88_06190 NZ_QYTI01000051.1 Protein Homology CDS 15599 16906 . - 0 ID=cds-WP_086163231.1;Parent=gene-D5F88_RS06180;Dbxref=GenBank:WP_086163231.1;Name=WP_086163231.1;gbkey=CDS;gene=lytR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000708155.1;locus_tag=D5F88_RS06180;product=glycopolymer--peptidoglycan transferase LytR;protein_id=WP_086163231.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 16915 17436 . - . ID=gene-D5F88_RS06185;Name=D5F88_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06185;old_locus_tag=D5F88_06195 NZ_QYTI01000051.1 Protein Homology CDS 16915 17436 . - 0 ID=cds-WP_000043141.1;Parent=gene-D5F88_RS06185;Dbxref=GenBank:WP_000043141.1;Name=WP_000043141.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647017.1;locus_tag=D5F88_RS06185;product=GNAT family N-acetyltransferase;protein_id=WP_000043141.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 17429 17872 . - . ID=gene-D5F88_RS06190;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=D5F88_RS06190;old_locus_tag=D5F88_06200 NZ_QYTI01000051.1 Protein Homology CDS 17429 17872 . - 0 ID=cds-WP_307777632.1;Parent=gene-D5F88_RS06190;Dbxref=GenBank:WP_307777632.1;Name=WP_307777632.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaE;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000500161.1;locus_tag=D5F88_RS06190;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=WP_307777632.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 18021 19442 . - . ID=gene-D5F88_RS06195;Name=D5F88_RS06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06195;old_locus_tag=D5F88_06205 NZ_QYTI01000051.1 Protein Homology CDS 18021 19442 . - 0 ID=cds-WP_016502534.1;Parent=gene-D5F88_RS06195;Dbxref=GenBank:WP_016502534.1;Name=WP_016502534.1;Ontology_term=GO:0015851,GO:0015205,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=nucleobase transmembrane transporter activity|0015205||IEA;go_process=nucleobase transport|0015851||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000410401.1;locus_tag=D5F88_RS06195;product=NCS2 family permease;protein_id=WP_016502534.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 19545 20156 . - . ID=gene-D5F88_RS06200;Name=D5F88_RS06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06200;old_locus_tag=D5F88_06210 NZ_QYTI01000051.1 Protein Homology CDS 19545 20156 . - 0 ID=cds-WP_000865226.1;Parent=gene-D5F88_RS06200;Dbxref=GenBank:WP_000865226.1;Name=WP_000865226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000865224.1;locus_tag=D5F88_RS06200;product=DUF1361 domain-containing protein;protein_id=WP_000865226.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 20246 20830 . - . ID=gene-D5F88_RS06205;Name=D5F88_RS06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06205;old_locus_tag=D5F88_06215 NZ_QYTI01000051.1 Protein Homology CDS 20246 20830 . - 0 ID=cds-WP_000734042.1;Parent=gene-D5F88_RS06205;Dbxref=GenBank:WP_000734042.1;Name=WP_000734042.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000734041.1;locus_tag=D5F88_RS06205;product=hypothetical protein;protein_id=WP_000734042.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 20919 21731 . + . ID=gene-D5F88_RS06210;Name=D5F88_RS06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06210;old_locus_tag=D5F88_06220 NZ_QYTI01000051.1 Protein Homology CDS 20919 21731 . + 0 ID=cds-WP_016502532.1;Parent=gene-D5F88_RS06210;Dbxref=GenBank:WP_016502532.1;Name=WP_016502532.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000162329.1;locus_tag=D5F88_RS06210;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_016502532.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 22034 23044 . + . ID=gene-D5F88_RS06220;Name=D5F88_RS06220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06220;old_locus_tag=D5F88_06230 NZ_QYTI01000051.1 Protein Homology CDS 22034 23044 . + 0 ID=cds-WP_000511108.1;Parent=gene-D5F88_RS06220;Dbxref=GenBank:WP_000511108.1;Name=WP_000511108.1;Ontology_term=GO:0009401,GO:0008982,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003044984.1;locus_tag=D5F88_RS06220;product=PTS sugar transporter subunit IIB;protein_id=WP_000511108.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 23077 23889 . + . ID=gene-D5F88_RS06225;Name=D5F88_RS06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06225;old_locus_tag=D5F88_06235 NZ_QYTI01000051.1 Protein Homology CDS 23077 23889 . + 0 ID=cds-WP_000763693.1;Parent=gene-D5F88_RS06225;Dbxref=GenBank:WP_000763693.1;Name=WP_000763693.1;Ontology_term=GO:0009401,GO:0034219,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,carbohydrate transmembrane transport|0034219||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000763694.1;locus_tag=D5F88_RS06225;product=PTS mannose/fructose/sorbose transporter subunit IIC;protein_id=WP_000763693.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 23904 24815 . + . ID=gene-D5F88_RS06230;Name=D5F88_RS06230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06230;old_locus_tag=D5F88_06240 NZ_QYTI01000051.1 Protein Homology CDS 23904 24815 . + 0 ID=cds-WP_000139227.1;Parent=gene-D5F88_RS06230;Dbxref=GenBank:WP_000139227.1;Name=WP_000139227.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000139230.1;locus_tag=D5F88_RS06230;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_000139227.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 24934 25296 . + . ID=gene-D5F88_RS06235;Name=D5F88_RS06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06235;old_locus_tag=D5F88_06245 NZ_QYTI01000051.1 Protein Homology CDS 24934 25296 . + 0 ID=cds-WP_000079341.1;Parent=gene-D5F88_RS06235;Dbxref=GenBank:WP_000079341.1;Name=WP_000079341.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058367.1;locus_tag=D5F88_RS06235;product=DUF956 family protein;protein_id=WP_000079341.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 25334 26395 . - . ID=gene-D5F88_RS06240;Name=D5F88_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06240;old_locus_tag=D5F88_06250 NZ_QYTI01000051.1 Protein Homology CDS 25334 26395 . - 0 ID=cds-WP_086163229.1;Parent=gene-D5F88_RS06240;Dbxref=GenBank:WP_086163229.1;Name=WP_086163229.1;Ontology_term=GO:0016413,GO:0016747;gbkey=CDS;go_function=O-acetyltransferase activity|0016413||IEA,acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000417627.1;locus_tag=D5F88_RS06240;product=acyltransferase;protein_id=WP_086163229.1;transl_table=11 NZ_QYTI01000051.1 RefSeq gene 26692 27969 . + . ID=gene-D5F88_RS06245;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=D5F88_RS06245;old_locus_tag=D5F88_06255 NZ_QYTI01000051.1 Protein Homology CDS 26692 27969 . + 0 ID=cds-WP_124773293.1;Parent=gene-D5F88_RS06245;Dbxref=GenBank:WP_124773293.1;Name=WP_124773293.1;Ontology_term=GO:0006434,GO:0000166,GO:0004828,GO:0005524;gbkey=CDS;gene=serS;go_function=nucleotide binding|0000166||IEA,serine-tRNA ligase activity|0004828||IEA,ATP binding|0005524||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000886194.1;locus_tag=D5F88_RS06245;product=serine--tRNA ligase;protein_id=WP_124773293.1;transl_table=11 NZ_QYTI01000051.1 RefSeq pseudogene 28015 28511 . - . ID=gene-D5F88_RS06250;Name=D5F88_RS06250;end_range=28511,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06250;old_locus_tag=D5F88_06260;partial=true;pseudo=true NZ_QYTI01000051.1 Protein Homology CDS 28015 28511 . - 2 ID=cds-D5F88_RS06250;Parent=gene-D5F88_RS06250;Note=internal stop%3B incomplete%3B missing N-terminus;end_range=28511,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000284161.1;locus_tag=D5F88_RS06250;partial=true;product=ribonuclease P;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000052.1 1 1589 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000052.1 RefSeq region 1 1589 . + . ID=NZ_QYTI01000052.1:1..1589;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000052.1 RefSeq pseudogene 1 717 . + . ID=gene-D5F88_RS06255;Name=D5F88_RS06255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06255;old_locus_tag=D5F88_06265;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000052.1 Protein Homology CDS 1 717 . + 0 ID=cds-D5F88_RS06255;Parent=gene-D5F88_RS06255;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001867507.1;locus_tag=D5F88_RS06255;partial=true;product=bifunctional acetaldehyde-CoA/alcohol dehydrogenase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000052.1 RefSeq pseudogene 687 1571 . - . ID=gene-D5F88_RS06260;Name=D5F88_RS06260;end_range=1571,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06260;old_locus_tag=D5F88_06270;partial=true;pseudo=true;start_range=.,687 NZ_QYTI01000052.1 Protein Homology CDS 687 1571 . - 0 ID=cds-D5F88_RS06260;Parent=gene-D5F88_RS06260;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0016491,GO:0046872;end_range=1571,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011888528.1;locus_tag=D5F88_RS06260;partial=true;product=iron-containing alcohol dehydrogenase;pseudo=true;start_range=.,687;transl_table=11 ##sequence-region NZ_QYTI01000053.1 1 4171 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000053.1 RefSeq region 1 4171 . + . ID=NZ_QYTI01000053.1:1..4171;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000053.1 RefSeq gene 85 3465 . + . ID=gene-D5F88_RS06265;Name=D5F88_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06265;old_locus_tag=D5F88_06275 NZ_QYTI01000053.1 Protein Homology CDS 85 3465 . + 0 ID=cds-WP_260424978.1;Parent=gene-D5F88_RS06265;Dbxref=GenBank:WP_260424978.1;Name=WP_260424978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017284822.1;locus_tag=D5F88_RS06265;product=hypothetical protein;protein_id=WP_260424978.1;transl_table=11 NZ_QYTI01000053.1 RefSeq pseudogene 3649 3798 . + . ID=gene-D5F88_RS06270;Name=D5F88_RS06270;end_range=3798,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06270;old_locus_tag=D5F88_06280;partial=true;pseudo=true NZ_QYTI01000053.1 Protein Homology CDS 3649 3798 . + 0 ID=cds-D5F88_RS06270;Parent=gene-D5F88_RS06270;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3798,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001873818.1;locus_tag=D5F88_RS06270;partial=true;product=neutral endopeptidase;pseudo=true;transl_table=11 NZ_QYTI01000053.1 RefSeq gene 3827 4171 . - . ID=gene-D5F88_RS06275;Name=D5F88_RS06275;end_range=4171,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06275;old_locus_tag=D5F88_06285;partial=true NZ_QYTI01000053.1 Protein Homology CDS 3827 4171 . - 0 ID=cds-WP_142997441.1;Parent=gene-D5F88_RS06275;Dbxref=GenBank:WP_142997441.1;Name=WP_142997441.1;Ontology_term=GO:0015074;end_range=4171,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS06275;partial=true;product=integrase core domain-containing protein;protein_id=WP_142997441.1;transl_table=11 ##sequence-region NZ_QYTI01000054.1 1 33890 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000054.1 RefSeq region 1 33890 . + . ID=NZ_QYTI01000054.1:1..33890;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000054.1 RefSeq gene 1 425 . + . ID=gene-D5F88_RS06280;Name=D5F88_RS06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06280;old_locus_tag=D5F88_06290;partial=true;start_range=.,1 NZ_QYTI01000054.1 Protein Homology CDS 1 425 . + 2 ID=cds-WP_142997442.1;Parent=gene-D5F88_RS06280;Dbxref=GenBank:WP_142997442.1;Name=WP_142997442.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS06280;partial=true;product=DDE-type integrase/transposase/recombinase;protein_id=WP_142997442.1;start_range=.,1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 443 817 . - . ID=gene-D5F88_RS06285;Name=D5F88_RS06285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06285;old_locus_tag=D5F88_06295 NZ_QYTI01000054.1 GeneMarkS-2+ CDS 443 817 . - 0 ID=cds-WP_257638795.1;Parent=gene-D5F88_RS06285;Dbxref=GenBank:WP_257638795.1;Name=WP_257638795.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS06285;product=hypothetical protein;protein_id=WP_257638795.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 789 1190 . - . ID=gene-D5F88_RS06290;Name=D5F88_RS06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06290;old_locus_tag=D5F88_06300 NZ_QYTI01000054.1 Protein Homology CDS 789 1190 . - 0 ID=cds-WP_001003188.1;Parent=gene-D5F88_RS06290;Dbxref=GenBank:WP_001003188.1;Name=WP_001003188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001003188.1;locus_tag=D5F88_RS06290;product=hypothetical protein;protein_id=WP_001003188.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 1196 1576 . - . ID=gene-D5F88_RS06295;Name=D5F88_RS06295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06295;old_locus_tag=D5F88_06305 NZ_QYTI01000054.1 Protein Homology CDS 1196 1576 . - 0 ID=cds-WP_001063017.1;Parent=gene-D5F88_RS06295;Dbxref=GenBank:WP_001063017.1;Name=WP_001063017.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001063017.1;locus_tag=D5F88_RS06295;product=TIGR04197 family type VII secretion effector;protein_id=WP_001063017.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 1590 5999 . - . ID=gene-D5F88_RS06300;Name=essC;gbkey=Gene;gene=essC;gene_biotype=protein_coding;locus_tag=D5F88_RS06300;old_locus_tag=D5F88_06310 NZ_QYTI01000054.1 Protein Homology CDS 1590 5999 . - 0 ID=cds-WP_086163341.1;Parent=gene-D5F88_RS06300;Dbxref=GenBank:WP_086163341.1;Name=WP_086163341.1;Ontology_term=GO:0009306;gbkey=CDS;gene=essC;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000960148.1;locus_tag=D5F88_RS06300;product=type VII secretion protein EssC;protein_id=WP_086163341.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 6006 7283 . - . ID=gene-D5F88_RS06310;Name=essB;gbkey=Gene;gene=essB;gene_biotype=protein_coding;locus_tag=D5F88_RS06310;old_locus_tag=D5F88_06320 NZ_QYTI01000054.1 Protein Homology CDS 6006 7283 . - 0 ID=cds-WP_000447063.1;Parent=gene-D5F88_RS06310;Dbxref=GenBank:WP_000447063.1;Name=WP_000447063.1;Ontology_term=GO:0009306;gbkey=CDS;gene=essB;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646308.1;locus_tag=D5F88_RS06310;product=type VII secretion protein EssB;protein_id=WP_000447063.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 7283 7525 . - . ID=gene-D5F88_RS06315;Name=D5F88_RS06315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06315;old_locus_tag=D5F88_06325 NZ_QYTI01000054.1 Protein Homology CDS 7283 7525 . - 0 ID=cds-WP_001091721.1;Parent=gene-D5F88_RS06315;Dbxref=GenBank:WP_001091721.1;Name=WP_001091721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480772.1;locus_tag=D5F88_RS06315;product=EsaB/YukD family protein;protein_id=WP_001091721.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 7509 7982 . - . ID=gene-D5F88_RS06320;Name=essA;gbkey=Gene;gene=essA;gene_biotype=protein_coding;locus_tag=D5F88_RS06320;old_locus_tag=D5F88_06330 NZ_QYTI01000054.1 Protein Homology CDS 7509 7982 . - 0 ID=cds-WP_086163342.1;Parent=gene-D5F88_RS06320;Dbxref=GenBank:WP_086163342.1;Name=WP_086163342.1;Ontology_term=GO:0009306;gbkey=CDS;gene=essA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000769475.1;locus_tag=D5F88_RS06320;product=type VII secretion protein EssA;protein_id=WP_086163342.1;transl_table=11 NZ_QYTI01000054.1 RefSeq pseudogene 7991 11007 . - . ID=gene-D5F88_RS06325;Name=esaA;gbkey=Gene;gene=esaA;gene_biotype=pseudogene;locus_tag=D5F88_RS06325;old_locus_tag=D5F88_06335;pseudo=true NZ_QYTI01000054.1 Protein Homology CDS 7991 11007 . - 0 ID=cds-D5F88_RS06325;Parent=gene-D5F88_RS06325;Note=frameshifted;Ontology_term=GO:0016020;gbkey=CDS;gene=esaA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000828107.1;locus_tag=D5F88_RS06325;product=type VII secretion protein EsaA;pseudo=true;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 11089 11379 . - . ID=gene-D5F88_RS06330;Name=D5F88_RS06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06330;old_locus_tag=D5F88_06340 NZ_QYTI01000054.1 Protein Homology CDS 11089 11379 . - 0 ID=cds-WP_000057250.1;Parent=gene-D5F88_RS06330;Dbxref=GenBank:WP_000057250.1;Name=WP_000057250.1;Ontology_term=GO:0005576;gbkey=CDS;go_component=extracellular region|0005576||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000057248.1;locus_tag=D5F88_RS06330;product=WXG100 family type VII secretion target;protein_id=WP_000057250.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 11547 11837 . - . ID=gene-D5F88_RS06335;Name=D5F88_RS06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06335;old_locus_tag=D5F88_06345 NZ_QYTI01000054.1 Protein Homology CDS 11547 11837 . - 0 ID=cds-WP_000057247.1;Parent=gene-D5F88_RS06335;Dbxref=GenBank:WP_000057247.1;Name=WP_000057247.1;Ontology_term=GO:0005576;gbkey=CDS;go_component=extracellular region|0005576||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000057248.1;locus_tag=D5F88_RS06335;product=WXG100 family type VII secretion target;protein_id=WP_000057247.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 11954 12736 . - . ID=gene-D5F88_RS06340;Name=D5F88_RS06340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06340;old_locus_tag=D5F88_06350 NZ_QYTI01000054.1 Protein Homology CDS 11954 12736 . - 0 ID=cds-WP_001883331.1;Parent=gene-D5F88_RS06340;Dbxref=GenBank:WP_001883331.1;Name=WP_001883331.1;Ontology_term=GO:0006629;gbkey=CDS;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001923787.1;locus_tag=D5F88_RS06340;product=lipase family protein;protein_id=WP_001883331.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 12733 13056 . - . ID=gene-D5F88_RS06345;Name=D5F88_RS06345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06345;old_locus_tag=D5F88_06355 NZ_QYTI01000054.1 Protein Homology CDS 12733 13056 . - 0 ID=cds-WP_000921240.1;Parent=gene-D5F88_RS06345;Dbxref=GenBank:WP_000921240.1;Name=WP_000921240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000921242.1;locus_tag=D5F88_RS06345;product=hypothetical protein;protein_id=WP_000921240.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 13183 16365 . - . ID=gene-D5F88_RS06350;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=D5F88_RS06350;old_locus_tag=D5F88_06360 NZ_QYTI01000054.1 Protein Homology CDS 13183 16365 . - 0 ID=cds-WP_016502885.1;Parent=gene-D5F88_RS06350;Dbxref=GenBank:WP_016502885.1;Name=WP_016502885.1;Ontology_term=GO:0008152,GO:0005524,GO:0046872;gbkey=CDS;gene=carB;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646011.1;locus_tag=D5F88_RS06350;product=carbamoyl-phosphate synthase large subunit;protein_id=WP_016502885.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 16396 17472 . - . ID=gene-D5F88_RS06355;Name=D5F88_RS06355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06355;old_locus_tag=D5F88_06365 NZ_QYTI01000054.1 Protein Homology CDS 16396 17472 . - 0 ID=cds-WP_086163344.1;Parent=gene-D5F88_RS06355;Dbxref=GenBank:WP_086163344.1;Name=WP_086163344.1;Ontology_term=GO:0006541,GO:0004088;gbkey=CDS;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000826106.1;locus_tag=D5F88_RS06355;product=carbamoyl phosphate synthase small subunit;protein_id=WP_086163344.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 17483 18409 . - . ID=gene-D5F88_RS06360;Name=D5F88_RS06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06360;old_locus_tag=D5F88_06370 NZ_QYTI01000054.1 Protein Homology CDS 17483 18409 . - 0 ID=cds-WP_001016474.1;Parent=gene-D5F88_RS06360;Dbxref=GenBank:WP_001016474.1;Name=WP_001016474.1;Ontology_term=GO:0006207,GO:0006520,GO:0004070,GO:0016597;gbkey=CDS;go_function=aspartate carbamoyltransferase activity|0004070||IEA,amino acid binding|0016597||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001016475.1;locus_tag=D5F88_RS06360;product=aspartate carbamoyltransferase catalytic subunit;protein_id=WP_001016474.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 18574 19866 . - . ID=gene-D5F88_RS06365;Name=D5F88_RS06365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06365;old_locus_tag=D5F88_06375 NZ_QYTI01000054.1 Protein Homology CDS 18574 19866 . - 0 ID=cds-WP_016502887.1;Parent=gene-D5F88_RS06365;Dbxref=GenBank:WP_016502887.1;Name=WP_016502887.1;Ontology_term=GO:0006221,GO:0004151,GO:0046872;gbkey=CDS;go_function=dihydroorotase activity|0004151||IEA,metal ion binding|0046872||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771964.1;locus_tag=D5F88_RS06365;product=dihydroorotase;protein_id=WP_016502887.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 19878 20507 . - . ID=gene-D5F88_RS06370;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=D5F88_RS06370;old_locus_tag=D5F88_06380 NZ_QYTI01000054.1 Protein Homology CDS 19878 20507 . - 0 ID=cds-WP_016502888.1;Parent=gene-D5F88_RS06370;Dbxref=GenBank:WP_016502888.1;Name=WP_016502888.1;Ontology_term=GO:0009220,GO:0004588;gbkey=CDS;gene=pyrE;go_function=orotate phosphoribosyltransferase activity|0004588||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502888.1;locus_tag=D5F88_RS06370;product=orotate phosphoribosyltransferase;protein_id=WP_016502888.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 20520 21221 . - . ID=gene-D5F88_RS06375;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=D5F88_RS06375;old_locus_tag=D5F88_06385 NZ_QYTI01000054.1 Protein Homology CDS 20520 21221 . - 0 ID=cds-WP_000890174.1;Parent=gene-D5F88_RS06375;Dbxref=GenBank:WP_000890174.1;Name=WP_000890174.1;Ontology_term=GO:0006207,GO:0044205,GO:0004590;gbkey=CDS;gene=pyrF;go_function=orotidine-5'-phosphate decarboxylase activity|0004590||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,'de novo' UMP biosynthetic process|0044205||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000890806.1;locus_tag=D5F88_RS06375;product=orotidine-5'-phosphate decarboxylase;protein_id=WP_000890174.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 21434 22666 . - . ID=gene-D5F88_RS06380;Name=D5F88_RS06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06380;old_locus_tag=D5F88_06390 NZ_QYTI01000054.1 Protein Homology CDS 21434 22666 . - 0 ID=cds-WP_001178655.1;Parent=gene-D5F88_RS06380;Dbxref=GenBank:WP_001178655.1;Name=WP_001178655.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001178658.1;locus_tag=D5F88_RS06380;product=threonine/serine ThrE exporter family protein;protein_id=WP_001178655.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 22706 24247 . - . ID=gene-D5F88_RS06385;Name=D5F88_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06385;old_locus_tag=D5F88_06395 NZ_QYTI01000054.1 Protein Homology CDS 22706 24247 . - 0 ID=cds-WP_086163345.1;Parent=gene-D5F88_RS06385;Dbxref=GenBank:WP_086163345.1;Name=WP_086163345.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000025412.1;locus_tag=D5F88_RS06385;product=ABC-F family ATP-binding cassette domain-containing protein;protein_id=WP_086163345.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 24378 24716 . - . ID=gene-D5F88_RS06390;Name=D5F88_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06390;old_locus_tag=D5F88_06400 NZ_QYTI01000054.1 Protein Homology CDS 24378 24716 . - 0 ID=cds-WP_001165746.1;Parent=gene-D5F88_RS06390;Dbxref=GenBank:WP_001165746.1;Name=WP_001165746.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001165748.1;locus_tag=D5F88_RS06390;product=ATP cone domain-containing protein;protein_id=WP_001165746.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 24886 25962 . - . ID=gene-D5F88_RS06395;Name=D5F88_RS06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06395;old_locus_tag=D5F88_06405 NZ_QYTI01000054.1 Protein Homology CDS 24886 25962 . - 0 ID=cds-WP_086163346.1;Parent=gene-D5F88_RS06395;Dbxref=GenBank:WP_086163346.1;Name=WP_086163346.1;Ontology_term=GO:0008652,GO:0004073,GO:0016620,GO:0051287;gbkey=CDS;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,NAD binding|0051287||IEA;go_process=amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502892.1;locus_tag=D5F88_RS06395;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_086163346.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 26170 26922 . - . ID=gene-D5F88_RS06400;Name=D5F88_RS06400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06400;old_locus_tag=D5F88_06410 NZ_QYTI01000054.1 Protein Homology CDS 26170 26922 . - 0 ID=cds-WP_086163347.1;Parent=gene-D5F88_RS06400;Dbxref=GenBank:WP_086163347.1;Name=WP_086163347.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000482160.1;locus_tag=D5F88_RS06400;product=KxYKxGKxW signal peptide domain-containing protein;protein_id=WP_086163347.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 27611 29209 . - . ID=gene-D5F88_RS06410;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=D5F88_RS06410;old_locus_tag=D5F88_06420 NZ_QYTI01000054.1 Protein Homology CDS 27611 29209 . - 0 ID=cds-WP_000566127.1;Parent=gene-D5F88_RS06410;Dbxref=GenBank:WP_000566127.1;Name=WP_000566127.1;Ontology_term=GO:0032049,GO:0008808,GO:0016780;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000566127.1;locus_tag=D5F88_RS06410;product=cardiolipin synthase;protein_id=WP_000566127.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 29324 30994 . - . ID=gene-D5F88_RS06415;Name=D5F88_RS06415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06415;old_locus_tag=D5F88_06425 NZ_QYTI01000054.1 Protein Homology CDS 29324 30994 . - 0 ID=cds-WP_124759423.1;Parent=gene-D5F88_RS06415;Dbxref=GenBank:WP_124759423.1;Name=WP_124759423.1;Ontology_term=GO:0004329,GO:0005524;gbkey=CDS;go_function=formate-tetrahydrofolate ligase activity|0004329||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646002.1;locus_tag=D5F88_RS06415;product=formate--tetrahydrofolate ligase;protein_id=WP_124759423.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 31083 32102 . - . ID=gene-D5F88_RS06420;Name=D5F88_RS06420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06420;old_locus_tag=D5F88_06430 NZ_QYTI01000054.1 Protein Homology CDS 31083 32102 . - 0 ID=cds-WP_000280831.1;Parent=gene-D5F88_RS06420;Dbxref=GenBank:WP_000280831.1;Name=WP_000280831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000280824.1;locus_tag=D5F88_RS06420;product=lipoate--protein ligase;protein_id=WP_000280831.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 32129 33007 . - . ID=gene-D5F88_RS06425;Name=D5F88_RS06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06425;old_locus_tag=D5F88_06435 NZ_QYTI01000054.1 Protein Homology CDS 32129 33007 . - 0 ID=cds-WP_000219405.1;Parent=gene-D5F88_RS06425;Dbxref=GenBank:WP_000219405.1;Name=WP_000219405.1;Ontology_term=GO:0008270,GO:0017136,GO:0046872,GO:0070403;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,histone deacetylase activity%2C NAD-dependent|0017136||IEA,metal ion binding|0046872||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000219408.1;locus_tag=D5F88_RS06425;product=SIR2 family NAD-dependent protein deacylase;protein_id=WP_000219405.1;transl_table=11 NZ_QYTI01000054.1 RefSeq gene 32976 33794 . - . ID=gene-D5F88_RS06430;Name=D5F88_RS06430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06430;old_locus_tag=D5F88_06440 NZ_QYTI01000054.1 Protein Homology CDS 32976 33794 . - 0 ID=cds-WP_001133601.1;Parent=gene-D5F88_RS06430;Dbxref=GenBank:WP_001133601.1;Name=WP_001133601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767264.1;locus_tag=D5F88_RS06430;product=protein-ADP-ribose hydrolase;protein_id=WP_001133601.1;transl_table=11 NZ_QYTI01000054.1 RefSeq pseudogene 33787 33890 . - . ID=gene-D5F88_RS06435;Name=D5F88_RS06435;end_range=33890,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06435;old_locus_tag=D5F88_06445;partial=true;pseudo=true NZ_QYTI01000054.1 Protein Homology CDS 33787 33890 . - 2 ID=cds-D5F88_RS06435;Parent=gene-D5F88_RS06435;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=33890,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000717324.1;locus_tag=D5F88_RS06435;partial=true;product=glycine cleavage system protein H;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000055.1 1 979 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000055.1 RefSeq region 1 979 . + . ID=NZ_QYTI01000055.1:1..979;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000055.1 RefSeq pseudogene 1 979 . - . ID=gene-D5F88_RS06440;Name=D5F88_RS06440;end_range=979,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06440;old_locus_tag=D5F88_06450;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000055.1 Protein Homology CDS 1 979 . - 1 ID=cds-D5F88_RS06440;Parent=gene-D5F88_RS06440;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=979,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000907193.1;locus_tag=D5F88_RS06440;partial=true;product=DNA-directed RNA polymerase subunit beta;pseudo=true;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000056.1 1 72631 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000056.1 RefSeq region 1 72631 . + . ID=NZ_QYTI01000056.1:1..72631;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000056.1 RefSeq gene 1 363 . + . ID=gene-D5F88_RS06445;Name=D5F88_RS06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06445;old_locus_tag=D5F88_06455;partial=true;start_range=.,1 NZ_QYTI01000056.1 Protein Homology CDS 1 363 . + 0 ID=cds-WP_142997443.1;Parent=gene-D5F88_RS06445;Dbxref=GenBank:WP_142997443.1;Name=WP_142997443.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS06445;partial=true;product=DDE-type integrase/transposase/recombinase;protein_id=WP_142997443.1;start_range=.,1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 450 1304 . - . ID=gene-D5F88_RS06450;Name=D5F88_RS06450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06450;old_locus_tag=D5F88_06460 NZ_QYTI01000056.1 Protein Homology CDS 450 1304 . - 0 ID=cds-WP_086163443.1;Parent=gene-D5F88_RS06450;Dbxref=GenBank:WP_086163443.1;Name=WP_086163443.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005538906.1;locus_tag=D5F88_RS06450;product=ATP-binding protein;protein_id=WP_086163443.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 1391 2572 . - . ID=gene-D5F88_RS06455;Name=D5F88_RS06455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06455;old_locus_tag=D5F88_06465 NZ_QYTI01000056.1 Protein Homology CDS 1391 2572 . - 0 ID=cds-WP_257638788.1;Parent=gene-D5F88_RS06455;Dbxref=GenBank:WP_257638788.1;Name=WP_257638788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003033518.1;locus_tag=D5F88_RS06455;product=replication initiator protein A;protein_id=WP_257638788.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 3039 3743 . - . ID=gene-D5F88_RS06460;Name=D5F88_RS06460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06460;old_locus_tag=D5F88_06470 NZ_QYTI01000056.1 Protein Homology CDS 3039 3743 . - 0 ID=cds-WP_086163445.1;Parent=gene-D5F88_RS06460;Dbxref=GenBank:WP_086163445.1;Name=WP_086163445.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017655.6;locus_tag=D5F88_RS06460;product=TraX family protein;protein_id=WP_086163445.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 3747 4568 . - . ID=gene-D5F88_RS06465;Name=D5F88_RS06465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06465;old_locus_tag=D5F88_06475 NZ_QYTI01000056.1 Protein Homology CDS 3747 4568 . - 0 ID=cds-WP_086163446.1;Parent=gene-D5F88_RS06465;Dbxref=GenBank:WP_086163446.1;Name=WP_086163446.1;Ontology_term=GO:0016311,GO:0042578,GO:0046872;gbkey=CDS;go_function=phosphoric ester hydrolase activity|0042578||IEA,metal ion binding|0046872||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: protein motif:HMM:NF012376.6;locus_tag=D5F88_RS06465;product=metallophosphoesterase;protein_id=WP_086163446.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 4558 6429 . - . ID=gene-D5F88_RS06470;Name=D5F88_RS06470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06470;old_locus_tag=D5F88_06480 NZ_QYTI01000056.1 Protein Homology CDS 4558 6429 . - 0 ID=cds-WP_124759413.1;Parent=gene-D5F88_RS06470;Dbxref=GenBank:WP_124759413.1;Name=WP_124759413.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002998004.1;locus_tag=D5F88_RS06470;product=FtsX-like permease family protein;protein_id=WP_124759413.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 6416 7171 . - . ID=gene-D5F88_RS06475;Name=D5F88_RS06475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06475;old_locus_tag=D5F88_06485 NZ_QYTI01000056.1 Protein Homology CDS 6416 7171 . - 0 ID=cds-WP_086163447.1;Parent=gene-D5F88_RS06475;Dbxref=GenBank:WP_086163447.1;Name=WP_086163447.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002997823.1;locus_tag=D5F88_RS06475;product=ABC transporter ATP-binding protein;protein_id=WP_086163447.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 7212 7601 . - . ID=gene-D5F88_RS06480;Name=D5F88_RS06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06480;old_locus_tag=D5F88_06490 NZ_QYTI01000056.1 GeneMarkS-2+ CDS 7212 7601 . - 0 ID=cds-WP_086163448.1;Parent=gene-D5F88_RS06480;Dbxref=GenBank:WP_086163448.1;Name=WP_086163448.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS06480;product=hypothetical protein;protein_id=WP_086163448.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 7719 8705 . - . ID=gene-D5F88_RS06485;Name=D5F88_RS06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06485;old_locus_tag=D5F88_06495 NZ_QYTI01000056.1 Protein Homology CDS 7719 8705 . - 0 ID=cds-WP_124758771.1;Parent=gene-D5F88_RS06485;Dbxref=GenBank:WP_124758771.1;Name=WP_124758771.1;Ontology_term=GO:0000160,GO:0007165,GO:0000155,GO:0004673,GO:0005524,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019788744.1;locus_tag=D5F88_RS06485;product=sensor histidine kinase;protein_id=WP_124758771.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 8695 9381 . - . ID=gene-D5F88_RS06490;Name=D5F88_RS06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06490;old_locus_tag=D5F88_06500 NZ_QYTI01000056.1 Protein Homology CDS 8695 9381 . - 0 ID=cds-WP_086163449.1;Parent=gene-D5F88_RS06490;Dbxref=GenBank:WP_086163449.1;Name=WP_086163449.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002997821.1;locus_tag=D5F88_RS06490;product=response regulator transcription factor;protein_id=WP_086163449.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 9393 10415 . - . ID=gene-D5F88_RS06495;Name=D5F88_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06495;old_locus_tag=D5F88_06505 NZ_QYTI01000056.1 Protein Homology CDS 9393 10415 . - 0 ID=cds-WP_124758770.1;Parent=gene-D5F88_RS06495;Dbxref=GenBank:WP_124758770.1;Name=WP_124758770.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014724.6;locus_tag=D5F88_RS06495;product=YdcF family protein;protein_id=WP_124758770.1;transl_table=11 NZ_QYTI01000056.1 RefSeq pseudogene 10581 10735 . - . ID=gene-D5F88_RS11615;Name=D5F88_RS11615;end_range=10735,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11615;partial=true;pseudo=true NZ_QYTI01000056.1 Protein Homology CDS 10581 10735 . - 0 ID=cds-D5F88_RS11615;Parent=gene-D5F88_RS11615;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=10735,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019213739.1;locus_tag=D5F88_RS11615;partial=true;product=MptD family putative ECF transporter S component;pseudo=true;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 10958 11827 . + . ID=gene-D5F88_RS06500;Name=tehB;gbkey=Gene;gene=tehB;gene_biotype=protein_coding;locus_tag=D5F88_RS06500;old_locus_tag=D5F88_06510 NZ_QYTI01000056.1 Protein Homology CDS 10958 11827 . + 0 ID=cds-WP_086163452.1;Parent=gene-D5F88_RS06500;Dbxref=GenBank:WP_086163452.1;Name=WP_086163452.1;Ontology_term=GO:0046690,GO:0008757;gbkey=CDS;gene=tehB;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=response to tellurium ion|0046690||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000248370.1;locus_tag=D5F88_RS06500;product=SAM-dependent methyltransferase TehB;protein_id=WP_086163452.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 11985 12680 . - . ID=gene-D5F88_RS06505;Name=D5F88_RS06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06505;old_locus_tag=D5F88_06515 NZ_QYTI01000056.1 Protein Homology CDS 11985 12680 . - 0 ID=cds-WP_000039372.1;Parent=gene-D5F88_RS06505;Dbxref=GenBank:WP_000039372.1;Name=WP_000039372.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000039367.1;locus_tag=D5F88_RS06505;product=YoaK family protein;protein_id=WP_000039372.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 13016 14233 . + . ID=gene-D5F88_RS06515;Name=D5F88_RS06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06515;old_locus_tag=D5F88_06525 NZ_QYTI01000056.1 Protein Homology CDS 13016 14233 . + 0 ID=cds-WP_086163453.1;Parent=gene-D5F88_RS06515;Dbxref=GenBank:WP_086163453.1;Name=WP_086163453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632181.1;locus_tag=D5F88_RS06515;product=PTS sugar transporter subunit IIC;protein_id=WP_086163453.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 14217 15059 . + . ID=gene-D5F88_RS06520;Name=D5F88_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06520;old_locus_tag=D5F88_06530 NZ_QYTI01000056.1 Protein Homology CDS 14217 15059 . + 0 ID=cds-WP_000735439.1;Parent=gene-D5F88_RS06520;Dbxref=GenBank:WP_000735439.1;Name=WP_000735439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000735438.1;locus_tag=D5F88_RS06520;product=alpha/beta hydrolase;protein_id=WP_000735439.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 15136 15963 . + . ID=gene-D5F88_RS06525;Name=D5F88_RS06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06525;old_locus_tag=D5F88_06535 NZ_QYTI01000056.1 Protein Homology CDS 15136 15963 . + 0 ID=cds-WP_016503092.1;Parent=gene-D5F88_RS06525;Dbxref=GenBank:WP_016503092.1;Name=WP_016503092.1;Ontology_term=GO:0006281,GO:0004518;gbkey=CDS;go_function=nuclease activity|0004518||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503092.1;locus_tag=D5F88_RS06525;product=exodeoxyribonuclease III;protein_id=WP_016503092.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 16003 16359 . - . ID=gene-D5F88_RS06530;Name=D5F88_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06530;old_locus_tag=D5F88_06540 NZ_QYTI01000056.1 Protein Homology CDS 16003 16359 . - 0 ID=cds-WP_016503093.1;Parent=gene-D5F88_RS06530;Dbxref=GenBank:WP_016503093.1;Name=WP_016503093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000287944.1;locus_tag=D5F88_RS06530;product=arsenate reductase family protein;protein_id=WP_016503093.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 16361 16837 . - . ID=gene-D5F88_RS06535;Name=D5F88_RS06535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06535;old_locus_tag=D5F88_06545 NZ_QYTI01000056.1 Protein Homology CDS 16361 16837 . - 0 ID=cds-WP_000966772.1;Parent=gene-D5F88_RS06535;Dbxref=GenBank:WP_000966772.1;Name=WP_000966772.1;Ontology_term=GO:0006281,GO:0032259,GO:0003677,GO:0003908,GO:0046872;gbkey=CDS;go_function=DNA binding|0003677||IEA,methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA,methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285345.1;locus_tag=D5F88_RS06535;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=WP_000966772.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 16893 18074 . - . ID=gene-D5F88_RS06540;Name=D5F88_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06540;old_locus_tag=D5F88_06550 NZ_QYTI01000056.1 Protein Homology CDS 16893 18074 . - 0 ID=cds-WP_000232153.1;Parent=gene-D5F88_RS06540;Dbxref=GenBank:WP_000232153.1;Name=WP_000232153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000232149.1;locus_tag=D5F88_RS06540;product=phosphoglycerate dehydrogenase;protein_id=WP_000232153.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 18136 18684 . - . ID=gene-D5F88_RS06545;Name=D5F88_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06545;old_locus_tag=D5F88_06555 NZ_QYTI01000056.1 Protein Homology CDS 18136 18684 . - 0 ID=cds-WP_001167085.1;Parent=gene-D5F88_RS06545;Dbxref=GenBank:WP_001167085.1;Name=WP_001167085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001167084.1;locus_tag=D5F88_RS06545;product=acetyltransferase;protein_id=WP_001167085.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 18752 19843 . - . ID=gene-D5F88_RS06550;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=D5F88_RS06550;old_locus_tag=D5F88_06560 NZ_QYTI01000056.1 Protein Homology CDS 18752 19843 . - 0 ID=cds-WP_000158395.1;Parent=gene-D5F88_RS06550;Dbxref=GenBank:WP_000158395.1;Name=WP_000158395.1;Ontology_term=GO:0006564,GO:0003824,GO:0004648;gbkey=CDS;gene=serC;go_function=catalytic activity|0003824||IEA,O-phospho-L-serine:2-oxoglutarate aminotransferase activity|0004648||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285343.1;locus_tag=D5F88_RS06550;product=3-phosphoserine/phosphohydroxythreonine transaminase;protein_id=WP_000158395.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 19976 20611 . + . ID=gene-D5F88_RS06555;Name=D5F88_RS06555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06555;old_locus_tag=D5F88_06565 NZ_QYTI01000056.1 Protein Homology CDS 19976 20611 . + 0 ID=cds-WP_086163454.1;Parent=gene-D5F88_RS06555;Dbxref=GenBank:WP_086163454.1;Name=WP_086163454.1;Ontology_term=GO:0005507;gbkey=CDS;go_function=copper ion binding|0005507||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285342.1;locus_tag=D5F88_RS06555;product=copper homeostasis protein CutC;protein_id=WP_086163454.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 20881 21750 . - . ID=gene-D5F88_RS06570;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=D5F88_RS06570;old_locus_tag=D5F88_06580 NZ_QYTI01000056.1 Protein Homology CDS 20881 21750 . - 0 ID=cds-WP_016481104.1;Parent=gene-D5F88_RS06570;Dbxref=GenBank:WP_016481104.1;Name=WP_016481104.1;Ontology_term=GO:0000451,GO:0008649,GO:0008757;gbkey=CDS;gene=rsmI;go_function=rRNA methyltransferase activity|0008649||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=rRNA 2'-O-methylation|0000451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000425856.1;locus_tag=D5F88_RS06570;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_016481104.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 21750 22076 . - . ID=gene-D5F88_RS06575;Name=yabA;gbkey=Gene;gene=yabA;gene_biotype=protein_coding;locus_tag=D5F88_RS06575;old_locus_tag=D5F88_06585 NZ_QYTI01000056.1 Protein Homology CDS 21750 22076 . - 0 ID=cds-WP_000358198.1;Parent=gene-D5F88_RS06575;Dbxref=GenBank:WP_000358198.1;Name=WP_000358198.1;gbkey=CDS;gene=yabA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000358198.1;locus_tag=D5F88_RS06575;product=DNA replication initiation control protein YabA;protein_id=WP_000358198.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 22107 22970 . - . ID=gene-D5F88_RS06580;Name=D5F88_RS06580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06580;old_locus_tag=D5F88_06590 NZ_QYTI01000056.1 Protein Homology CDS 22107 22970 . - 0 ID=cds-WP_000364568.1;Parent=gene-D5F88_RS06580;Dbxref=GenBank:WP_000364568.1;Name=WP_000364568.1;Ontology_term=GO:0006260,GO:0003887,GO:0008408;gbkey=CDS;go_function=DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000364566.1;locus_tag=D5F88_RS06580;product=DNA polymerase III subunit delta';protein_id=WP_000364568.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 22990 23625 . - . ID=gene-D5F88_RS06585;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=D5F88_RS06585;old_locus_tag=D5F88_06595 NZ_QYTI01000056.1 Protein Homology CDS 22990 23625 . - 0 ID=cds-WP_016503100.1;Parent=gene-D5F88_RS06585;Dbxref=GenBank:WP_016503100.1;Name=WP_016503100.1;Ontology_term=GO:0006233,GO:0004798,GO:0005524;gbkey=CDS;gene=tmk;go_function=dTMP kinase activity|0004798||IEA,ATP binding|0005524||IEA;go_process=dTDP biosynthetic process|0006233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000715594.1;locus_tag=D5F88_RS06585;product=dTMP kinase;protein_id=WP_016503100.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 23716 24375 . - . ID=gene-D5F88_RS06590;Name=D5F88_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06590;old_locus_tag=D5F88_06600 NZ_QYTI01000056.1 Protein Homology CDS 23716 24375 . - 0 ID=cds-WP_001144245.1;Parent=gene-D5F88_RS06590;Dbxref=GenBank:WP_001144245.1;Name=WP_001144245.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001934124.1;locus_tag=D5F88_RS06590;product=CBS domain-containing protein;protein_id=WP_001144245.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 24394 25104 . - . ID=gene-D5F88_RS06595;Name=D5F88_RS06595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06595;old_locus_tag=D5F88_06605 NZ_QYTI01000056.1 Protein Homology CDS 24394 25104 . - 0 ID=cds-WP_086163456.1;Parent=gene-D5F88_RS06595;Dbxref=GenBank:WP_086163456.1;Name=WP_086163456.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000178141.1;locus_tag=D5F88_RS06595;product=ABC transporter ATP-binding protein;protein_id=WP_086163456.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 25104 25868 . - . ID=gene-D5F88_RS06600;Name=D5F88_RS06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06600;old_locus_tag=D5F88_06610 NZ_QYTI01000056.1 Protein Homology CDS 25104 25868 . - 0 ID=cds-WP_001185985.1;Parent=gene-D5F88_RS06600;Dbxref=GenBank:WP_001185985.1;Name=WP_001185985.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650814.1;locus_tag=D5F88_RS06600;product=ABC transporter ATP-binding protein;protein_id=WP_001185985.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 25869 26822 . - . ID=gene-D5F88_RS06605;Name=D5F88_RS06605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06605;old_locus_tag=D5F88_06615 NZ_QYTI01000056.1 Protein Homology CDS 25869 26822 . - 0 ID=cds-WP_016503103.1;Parent=gene-D5F88_RS06605;Dbxref=GenBank:WP_016503103.1;Name=WP_016503103.1;Ontology_term=GO:0015803,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=branched-chain amino acid transport|0015803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000662325.1;locus_tag=D5F88_RS06605;product=branched-chain amino acid ABC transporter permease;protein_id=WP_016503103.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 26825 27694 . - . ID=gene-D5F88_RS06610;Name=D5F88_RS06610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06610;old_locus_tag=D5F88_06620 NZ_QYTI01000056.1 Protein Homology CDS 26825 27694 . - 0 ID=cds-WP_000941400.1;Parent=gene-D5F88_RS06610;Dbxref=GenBank:WP_000941400.1;Name=WP_000941400.1;Ontology_term=GO:0015803,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=branched-chain amino acid transport|0015803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000941401.1;locus_tag=D5F88_RS06610;product=branched-chain amino acid ABC transporter permease;protein_id=WP_000941400.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 27801 28967 . - . ID=gene-D5F88_RS06615;Name=D5F88_RS06615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06615;old_locus_tag=D5F88_06625 NZ_QYTI01000056.1 Protein Homology CDS 27801 28967 . - 0 ID=cds-WP_086163457.1;Parent=gene-D5F88_RS06615;Dbxref=GenBank:WP_086163457.1;Name=WP_086163457.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771624.1;locus_tag=D5F88_RS06615;product=ABC transporter substrate-binding protein;protein_id=WP_086163457.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 29122 29367 . - . ID=gene-D5F88_RS06620;Name=D5F88_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06620;old_locus_tag=D5F88_06630 NZ_QYTI01000056.1 Protein Homology CDS 29122 29367 . - 0 ID=cds-WP_001041186.1;Parent=gene-D5F88_RS06620;Dbxref=GenBank:WP_001041186.1;Name=WP_001041186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001041185.1;locus_tag=D5F88_RS06620;product=DUF2129 domain-containing protein;protein_id=WP_001041186.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 29467 30057 . - . ID=gene-D5F88_RS06625;Name=D5F88_RS06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06625;old_locus_tag=D5F88_06635 NZ_QYTI01000056.1 Protein Homology CDS 29467 30057 . - 0 ID=cds-WP_000613483.1;Parent=gene-D5F88_RS06625;Dbxref=GenBank:WP_000613483.1;Name=WP_000613483.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252;gbkey=CDS;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002262672.1;locus_tag=D5F88_RS06625;product=ATP-dependent Clp protease proteolytic subunit;protein_id=WP_000613483.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 30182 30811 . - . ID=gene-D5F88_RS06630;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=D5F88_RS06630;old_locus_tag=D5F88_06640 NZ_QYTI01000056.1 Protein Homology CDS 30182 30811 . - 0 ID=cds-WP_000514490.1;Parent=gene-D5F88_RS06630;Dbxref=GenBank:WP_000514490.1;Name=WP_000514490.1;Ontology_term=GO:0009116,GO:0004845;gbkey=CDS;gene=upp;go_function=uracil phosphoribosyltransferase activity|0004845||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002883819.1;locus_tag=D5F88_RS06630;product=uracil phosphoribosyltransferase;protein_id=WP_000514490.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 30921 32090 . - . ID=gene-D5F88_RS06635;Name=D5F88_RS06635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06635;old_locus_tag=D5F88_06645 NZ_QYTI01000056.1 Protein Homology CDS 30921 32090 . - 0 ID=cds-WP_086163458.1;Parent=gene-D5F88_RS06635;Dbxref=GenBank:WP_086163458.1;Name=WP_086163458.1;Ontology_term=GO:0009086,GO:0030170,GO:0047804;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine-S-conjugate beta-lyase activity|0047804||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285069.1;locus_tag=D5F88_RS06635;product=MalY/PatB family protein;protein_id=WP_086163458.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 32226 32774 . - . ID=gene-D5F88_RS06640;Name=D5F88_RS06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06640;old_locus_tag=D5F88_06650 NZ_QYTI01000056.1 Protein Homology CDS 32226 32774 . - 0 ID=cds-WP_001019793.1;Parent=gene-D5F88_RS06640;Dbxref=GenBank:WP_001019793.1;Name=WP_001019793.1;Ontology_term=GO:0001510,GO:0003723,GO:0008173,GO:0141098,GO:1904047;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA,tRNA (cytidine(34)-2'-O)-methyltransferase activity|0141098||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001019793.1;locus_tag=D5F88_RS06640;product=tRNA (cytidine(34)-2'-O)-methyltransferase;protein_id=WP_001019793.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 32947 34299 . - . ID=gene-D5F88_RS06645;Name=D5F88_RS06645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06645;old_locus_tag=D5F88_06655 NZ_QYTI01000056.1 Protein Homology CDS 32947 34299 . - 0 ID=cds-WP_016503106.1;Parent=gene-D5F88_RS06645;Dbxref=GenBank:WP_016503106.1;Name=WP_016503106.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650770.1;locus_tag=D5F88_RS06645;product=APC family permease;protein_id=WP_016503106.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 34505 35854 . + . ID=gene-D5F88_RS06650;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;locus_tag=D5F88_RS06650;old_locus_tag=D5F88_06660 NZ_QYTI01000056.1 Protein Homology CDS 34505 35854 . + 0 ID=cds-WP_086163459.1;Parent=gene-D5F88_RS06650;Dbxref=GenBank:WP_086163459.1;Name=WP_086163459.1;gbkey=CDS;gene=trkA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002262566.1;locus_tag=D5F88_RS06650;product=Trk system potassium transporter TrkA;protein_id=WP_086163459.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 35859 37298 . + . ID=gene-D5F88_RS06655;Name=D5F88_RS06655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06655;old_locus_tag=D5F88_06665 NZ_QYTI01000056.1 Protein Homology CDS 35859 37298 . + 0 ID=cds-WP_001043412.1;Parent=gene-D5F88_RS06655;Dbxref=GenBank:WP_001043412.1;Name=WP_001043412.1;Ontology_term=GO:0030001,GO:0008324,GO:0015079;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA,potassium ion transmembrane transporter activity|0015079||IEA;go_process=metal ion transport|0030001||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001043405.1;locus_tag=D5F88_RS06655;product=TrkH family potassium uptake protein;protein_id=WP_001043412.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 37322 37573 . - . ID=gene-D5F88_RS06660;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=D5F88_RS06660;old_locus_tag=D5F88_06670 NZ_QYTI01000056.1 Protein Homology CDS 37322 37573 . - 0 ID=cds-WP_000920196.1;Parent=gene-D5F88_RS06660;Dbxref=GenBank:WP_000920196.1;Name=WP_000920196.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000920199.1;locus_tag=D5F88_RS06660;product=membrane protein insertion efficiency factor YidD;protein_id=WP_000920196.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 37573 38295 . - . ID=gene-D5F88_RS06665;Name=D5F88_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06665;old_locus_tag=D5F88_06675 NZ_QYTI01000056.1 Protein Homology CDS 37573 38295 . - 0 ID=cds-WP_086163460.1;Parent=gene-D5F88_RS06665;Dbxref=GenBank:WP_086163460.1;Name=WP_086163460.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982,GO:0140098;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA,catalytic activity%2C acting on RNA|0140098||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001934129.1;locus_tag=D5F88_RS06665;product=pseudouridine synthase;protein_id=WP_086163460.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 38285 38869 . - . ID=gene-D5F88_RS06670;Name=scpB;gbkey=Gene;gene=scpB;gene_biotype=protein_coding;locus_tag=D5F88_RS06670;old_locus_tag=D5F88_06680 NZ_QYTI01000056.1 Protein Homology CDS 38285 38869 . - 0 ID=cds-WP_000221690.1;Parent=gene-D5F88_RS06670;Dbxref=GenBank:WP_000221690.1;Name=WP_000221690.1;Ontology_term=GO:0007059,GO:0005515;gbkey=CDS;gene=scpB;go_function=protein binding|0005515||IEA;go_process=chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771433.1;locus_tag=D5F88_RS06670;product=SMC-Scp complex subunit ScpB;protein_id=WP_000221690.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 38866 39573 . - . ID=gene-D5F88_RS06675;Name=D5F88_RS06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06675;old_locus_tag=D5F88_06685 NZ_QYTI01000056.1 Protein Homology CDS 38866 39573 . - 0 ID=cds-WP_000351869.1;Parent=gene-D5F88_RS06675;Dbxref=GenBank:WP_000351869.1;Name=WP_000351869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643695.1;locus_tag=D5F88_RS06675;product=segregation/condensation protein A;protein_id=WP_000351869.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 39573 40313 . - . ID=gene-D5F88_RS06680;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=D5F88_RS06680;old_locus_tag=D5F88_06690 NZ_QYTI01000056.1 Protein Homology CDS 39573 40313 . - 0 ID=cds-WP_000606413.1;Parent=gene-D5F88_RS06680;Dbxref=GenBank:WP_000606413.1;Name=WP_000606413.1;gbkey=CDS;gene=xerD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017770859.1;locus_tag=D5F88_RS06680;product=site-specific tyrosine recombinase XerD;protein_id=WP_000606413.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 40303 40776 . - . ID=gene-D5F88_RS06685;Name=cbpB;gbkey=Gene;gene=cbpB;gene_biotype=protein_coding;locus_tag=D5F88_RS06685;old_locus_tag=D5F88_06695 NZ_QYTI01000056.1 Protein Homology CDS 40303 40776 . - 0 ID=cds-WP_000560708.1;Parent=gene-D5F88_RS06685;Dbxref=GenBank:WP_000560708.1;Name=WP_000560708.1;Ontology_term=GO:0180001;gbkey=CDS;gene=cbpB;go_function=cyclic-di-AMP binding|0180001||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000560707.1;locus_tag=D5F88_RS06685;product=cyclic-di-AMP-binding protein CbpB;protein_id=WP_000560708.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 40773 41294 . - . ID=gene-D5F88_RS06690;Name=D5F88_RS06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06690;old_locus_tag=D5F88_06700 NZ_QYTI01000056.1 Protein Homology CDS 40773 41294 . - 0 ID=cds-WP_001007723.1;Parent=gene-D5F88_RS06690;Dbxref=GenBank:WP_001007723.1;Name=WP_001007723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001007721.1;locus_tag=D5F88_RS06690;product=metallophosphoesterase;protein_id=WP_001007723.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 41276 42250 . - . ID=gene-D5F88_RS06695;Name=D5F88_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06695;old_locus_tag=D5F88_06705 NZ_QYTI01000056.1 Protein Homology CDS 41276 42250 . - 0 ID=cds-WP_000167813.1;Parent=gene-D5F88_RS06695;Dbxref=GenBank:WP_000167813.1;Name=WP_000167813.1;Ontology_term=GO:0009143,GO:0047429;gbkey=CDS;go_function=nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleoside triphosphate catabolic process|0009143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768312.1;locus_tag=D5F88_RS06695;product=nucleoside-triphosphate diphosphatase;protein_id=WP_000167813.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 42247 43041 . - . ID=gene-D5F88_RS06700;Name=racE;gbkey=Gene;gene=racE;gene_biotype=protein_coding;locus_tag=D5F88_RS06700;old_locus_tag=D5F88_06710 NZ_QYTI01000056.1 Protein Homology CDS 42247 43041 . - 0 ID=cds-WP_000378351.1;Parent=gene-D5F88_RS06700;Dbxref=GenBank:WP_000378351.1;Name=WP_000378351.1;Ontology_term=GO:0008152,GO:0008881;gbkey=CDS;gene=racE;go_function=glutamate racemase activity|0008881||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000378350.1;locus_tag=D5F88_RS06700;product=glutamate racemase;protein_id=WP_000378351.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 43216 43455 . - . ID=gene-D5F88_RS06705;Name=D5F88_RS06705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06705;old_locus_tag=D5F88_06715 NZ_QYTI01000056.1 Protein Homology CDS 43216 43455 . - 0 ID=cds-WP_124773297.1;Parent=gene-D5F88_RS06705;Dbxref=GenBank:WP_124773297.1;Name=WP_124773297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000108276.1;locus_tag=D5F88_RS06705;product=YneF family protein;protein_id=WP_124773297.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 43613 44155 . - . ID=gene-D5F88_RS06710;Name=D5F88_RS06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06710;old_locus_tag=D5F88_06720 NZ_QYTI01000056.1 Protein Homology CDS 43613 44155 . - 0 ID=cds-WP_000039538.1;Parent=gene-D5F88_RS06710;Dbxref=GenBank:WP_000039538.1;Name=WP_000039538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000039538.1;locus_tag=D5F88_RS06710;product=hypothetical protein;protein_id=WP_000039538.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 44217 44738 . - . ID=gene-D5F88_RS06715;Name=D5F88_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06715;old_locus_tag=D5F88_06725 NZ_QYTI01000056.1 Protein Homology CDS 44217 44738 . - 0 ID=cds-WP_000647216.1;Parent=gene-D5F88_RS06715;Dbxref=GenBank:WP_000647216.1;Name=WP_000647216.1;Ontology_term=GO:0036094;gbkey=CDS;go_function=small molecule binding|0036094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767843.1;locus_tag=D5F88_RS06715;product=transcription repressor NadR;protein_id=WP_000647216.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 44806 45495 . - . ID=gene-D5F88_RS06720;Name=D5F88_RS06720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06720;old_locus_tag=D5F88_06730 NZ_QYTI01000056.1 Protein Homology CDS 44806 45495 . - 0 ID=cds-WP_000999457.1;Parent=gene-D5F88_RS06720;Dbxref=GenBank:WP_000999457.1;Name=WP_000999457.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632195.1;locus_tag=D5F88_RS06720;product=Bax inhibitor-1/YccA family protein;protein_id=WP_000999457.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 45518 46021 . - . ID=gene-D5F88_RS06725;Name=D5F88_RS06725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06725;old_locus_tag=D5F88_06735 NZ_QYTI01000056.1 Protein Homology CDS 45518 46021 . - 0 ID=cds-WP_000760496.1;Parent=gene-D5F88_RS06725;Dbxref=GenBank:WP_000760496.1;Name=WP_000760496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003087049.1;locus_tag=D5F88_RS06725;product=HD domain-containing protein;protein_id=WP_000760496.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 46059 46802 . - . ID=gene-D5F88_RS06730;Name=D5F88_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06730;old_locus_tag=D5F88_06740 NZ_QYTI01000056.1 Protein Homology CDS 46059 46802 . - 0 ID=cds-WP_000207505.1;Parent=gene-D5F88_RS06730;Dbxref=GenBank:WP_000207505.1;Name=WP_000207505.1;Ontology_term=GO:0006396,GO:0032259,GO:0003723,GO:0008173,GO:1904047;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=RNA processing|0006396||IEA,methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000207503.1;locus_tag=D5F88_RS06730;product=TrmH family RNA methyltransferase;protein_id=WP_000207505.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 46834 47112 . + . ID=gene-D5F88_RS06735;Name=D5F88_RS06735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06735;old_locus_tag=D5F88_06745 NZ_QYTI01000056.1 Protein Homology CDS 46834 47112 . + 0 ID=cds-WP_000755489.1;Parent=gene-D5F88_RS06735;Dbxref=GenBank:WP_000755489.1;Name=WP_000755489.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000755490.1;locus_tag=D5F88_RS06735;product=acylphosphatase;protein_id=WP_000755489.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 47197 48129 . + . ID=gene-D5F88_RS06740;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=D5F88_RS06740;old_locus_tag=D5F88_06750 NZ_QYTI01000056.1 Protein Homology CDS 47197 48129 . + 0 ID=cds-WP_016503111.1;Parent=gene-D5F88_RS06740;Dbxref=GenBank:WP_016503111.1;Name=WP_016503111.1;gbkey=CDS;gene=yidC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503111.1;locus_tag=D5F88_RS06740;product=membrane protein insertase YidC;protein_id=WP_016503111.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 48338 49003 . - . ID=gene-D5F88_RS06745;Name=D5F88_RS06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06745;old_locus_tag=D5F88_06755 NZ_QYTI01000056.1 Protein Homology CDS 48338 49003 . - 0 ID=cds-WP_000611501.1;Parent=gene-D5F88_RS06745;Dbxref=GenBank:WP_000611501.1;Name=WP_000611501.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000611496.1;locus_tag=D5F88_RS06745;product=amino acid ABC transporter permease;protein_id=WP_000611501.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 49027 49884 . - . ID=gene-D5F88_RS06750;Name=D5F88_RS06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06750;old_locus_tag=D5F88_06760 NZ_QYTI01000056.1 Protein Homology CDS 49027 49884 . - 0 ID=cds-WP_016503112.1;Parent=gene-D5F88_RS06750;Dbxref=GenBank:WP_016503112.1;Name=WP_016503112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000751024.1;locus_tag=D5F88_RS06750;product=transporter substrate-binding domain-containing protein;protein_id=WP_016503112.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 50045 51505 . - . ID=gene-D5F88_RS06755;Name=D5F88_RS06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06755;old_locus_tag=D5F88_06765 NZ_QYTI01000056.1 Protein Homology CDS 50045 51505 . - 0 ID=cds-WP_016503113.1;Parent=gene-D5F88_RS06755;Dbxref=GenBank:WP_016503113.1;Name=WP_016503113.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058718.1;locus_tag=D5F88_RS06755;product=amidase;protein_id=WP_016503113.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 51609 52091 . - . ID=gene-D5F88_RS06760;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=D5F88_RS06760;old_locus_tag=D5F88_06770 NZ_QYTI01000056.1 Protein Homology CDS 51609 52091 . - 0 ID=cds-WP_000818772.1;Parent=gene-D5F88_RS06760;Dbxref=GenBank:WP_000818772.1;Name=WP_000818772.1;gbkey=CDS;gene=greA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481121.1;locus_tag=D5F88_RS06760;product=transcription elongation factor GreA;protein_id=WP_000818772.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 52164 53966 . - . ID=gene-D5F88_RS06765;Name=mltG;gbkey=Gene;gene=mltG;gene_biotype=protein_coding;locus_tag=D5F88_RS06765;old_locus_tag=D5F88_06775 NZ_QYTI01000056.1 Protein Homology CDS 52164 53966 . - 0 ID=cds-WP_086163462.1;Parent=gene-D5F88_RS06765;Dbxref=GenBank:WP_086163462.1;Name=WP_086163462.1;Ontology_term=GO:0009252,GO:0071555,GO:0008932;gbkey=CDS;gene=mltG;go_function=lytic endotransglycosylase activity|0008932||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481122.1;locus_tag=D5F88_RS06765;product=endolytic transglycosylase MltG;protein_id=WP_086163462.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 54053 54556 . - . ID=gene-D5F88_RS06770;Name=D5F88_RS06770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06770;old_locus_tag=D5F88_06780 NZ_QYTI01000056.1 Protein Homology CDS 54053 54556 . - 0 ID=cds-WP_016503116.1;Parent=gene-D5F88_RS06770;Dbxref=GenBank:WP_016503116.1;Name=WP_016503116.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000586872.1;locus_tag=D5F88_RS06770;product=GNAT family N-acetyltransferase;protein_id=WP_016503116.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 54642 55973 . - . ID=gene-D5F88_RS06775;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=D5F88_RS06775;old_locus_tag=D5F88_06785 NZ_QYTI01000056.1 Protein Homology CDS 54642 55973 . - 0 ID=cds-WP_016503117.1;Parent=gene-D5F88_RS06775;Dbxref=GenBank:WP_016503117.1;Name=WP_016503117.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058719.1;locus_tag=D5F88_RS06775;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_016503117.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 55983 56600 . - . ID=gene-D5F88_RS06780;Name=D5F88_RS06780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06780;old_locus_tag=D5F88_06790 NZ_QYTI01000056.1 Protein Homology CDS 55983 56600 . - 0 ID=cds-WP_001079340.1;Parent=gene-D5F88_RS06780;Dbxref=GenBank:WP_001079340.1;Name=WP_001079340.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058720.1;locus_tag=D5F88_RS06780;product=hypothetical protein;protein_id=WP_001079340.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 56765 59863 . - . ID=gene-D5F88_RS06790;Name=D5F88_RS06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06790;old_locus_tag=D5F88_06800 NZ_QYTI01000056.1 Protein Homology CDS 56765 59863 . - 0 ID=cds-WP_016503120.1;Parent=gene-D5F88_RS06790;Dbxref=GenBank:WP_016503120.1;Name=WP_016503120.1;Ontology_term=GO:0003676,GO:0004386,GO:0005524,GO:0016887;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000089139.1;locus_tag=D5F88_RS06790;product=DEAD/DEAH box helicase;protein_id=WP_016503120.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 60019 61329 . - . ID=gene-D5F88_RS06795;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=D5F88_RS06795;old_locus_tag=D5F88_06805 NZ_QYTI01000056.1 Protein Homology CDS 60019 61329 . - 0 ID=cds-WP_000244019.1;Parent=gene-D5F88_RS06795;Dbxref=GenBank:WP_000244019.1;Name=WP_000244019.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018377046.1;locus_tag=D5F88_RS06795;product=ribosome biogenesis GTPase Der;protein_id=WP_000244019.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 61377 62279 . - . ID=gene-D5F88_RS06800;Name=dnaI;gbkey=Gene;gene=dnaI;gene_biotype=protein_coding;locus_tag=D5F88_RS06800;old_locus_tag=D5F88_06810 NZ_QYTI01000056.1 Protein Homology CDS 61377 62279 . - 0 ID=cds-WP_016503121.1;Parent=gene-D5F88_RS06800;Dbxref=GenBank:WP_016503121.1;Name=WP_016503121.1;gbkey=CDS;gene=dnaI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481126.1;locus_tag=D5F88_RS06800;product=primosomal protein DnaI;protein_id=WP_016503121.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 62276 63451 . - . ID=gene-D5F88_RS06805;Name=D5F88_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06805;old_locus_tag=D5F88_06815 NZ_QYTI01000056.1 Protein Homology CDS 62276 63451 . - 0 ID=cds-WP_016503122.1;Parent=gene-D5F88_RS06805;Dbxref=GenBank:WP_016503122.1;Name=WP_016503122.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000074514.1;locus_tag=D5F88_RS06805;product=DnaD domain protein;protein_id=WP_016503122.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 63451 63930 . - . ID=gene-D5F88_RS06810;Name=nrdR;gbkey=Gene;gene=nrdR;gene_biotype=protein_coding;locus_tag=D5F88_RS06810;old_locus_tag=D5F88_06820 NZ_QYTI01000056.1 Protein Homology CDS 63451 63930 . - 0 ID=cds-WP_001203682.1;Parent=gene-D5F88_RS06810;Dbxref=GenBank:WP_001203682.1;Name=WP_001203682.1;Ontology_term=GO:0006355,GO:0008270,GO:0140110;gbkey=CDS;gene=nrdR;go_function=zinc ion binding|0008270||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001203682.1;locus_tag=D5F88_RS06810;product=transcriptional regulator NrdR;protein_id=WP_001203682.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 64079 65584 . - . ID=gene-D5F88_RS06815;Name=D5F88_RS06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06815;old_locus_tag=D5F88_06825 NZ_QYTI01000056.1 Protein Homology CDS 64079 65584 . - 0 ID=cds-WP_016503123.1;Parent=gene-D5F88_RS06815;Dbxref=GenBank:WP_016503123.1;Name=WP_016503123.1;Ontology_term=GO:0007165,GO:0000155,GO:0000156,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,phosphorelay response regulator activity|0000156||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768333.1;locus_tag=D5F88_RS06815;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_016503123.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 65574 66263 . - . ID=gene-D5F88_RS06820;Name=D5F88_RS06820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06820;old_locus_tag=D5F88_06830 NZ_QYTI01000056.1 Protein Homology CDS 65574 66263 . - 0 ID=cds-WP_000516681.1;Parent=gene-D5F88_RS06820;Dbxref=GenBank:WP_000516681.1;Name=WP_000516681.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000516681.1;locus_tag=D5F88_RS06820;product=response regulator transcription factor;protein_id=WP_000516681.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 66498 67031 . - . ID=gene-D5F88_RS06825;Name=D5F88_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06825;old_locus_tag=D5F88_06835 NZ_QYTI01000056.1 Protein Homology CDS 66498 67031 . - 0 ID=cds-WP_000927547.1;Parent=gene-D5F88_RS06825;Dbxref=GenBank:WP_000927547.1;Name=WP_000927547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000927541.1;locus_tag=D5F88_RS06825;product=YceD family protein;protein_id=WP_000927547.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 67136 68026 . - . ID=gene-D5F88_RS06830;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=D5F88_RS06830;old_locus_tag=D5F88_06840 NZ_QYTI01000056.1 Protein Homology CDS 67136 68026 . - 0 ID=cds-WP_000966816.1;Parent=gene-D5F88_RS06830;Dbxref=GenBank:WP_000966816.1;Name=WP_000966816.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=htpX;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000966825.1;locus_tag=D5F88_RS06830;product=zinc metalloprotease HtpX;protein_id=WP_000966816.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 68047 68601 . - . ID=gene-D5F88_RS06835;Name=D5F88_RS06835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06835;old_locus_tag=D5F88_06845 NZ_QYTI01000056.1 Protein Homology CDS 68047 68601 . - 0 ID=cds-WP_000537055.1;Parent=gene-D5F88_RS06835;Dbxref=GenBank:WP_000537055.1;Name=WP_000537055.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000537058.1;locus_tag=D5F88_RS06835;product=LemA family protein;protein_id=WP_000537055.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 68729 69442 . + . ID=gene-D5F88_RS06840;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=protein_coding;locus_tag=D5F88_RS06840;old_locus_tag=D5F88_06850 NZ_QYTI01000056.1 Protein Homology CDS 68729 69442 . + 0 ID=cds-WP_000188792.1;Parent=gene-D5F88_RS06840;Dbxref=GenBank:WP_000188792.1;Name=WP_000188792.1;Ontology_term=GO:0031167,GO:0046118,GO:0008168;gbkey=CDS;gene=rsmG;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481130.1;locus_tag=D5F88_RS06840;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;protein_id=WP_000188792.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 69457 70836 . + . ID=gene-D5F88_RS06845;Name=D5F88_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06845;old_locus_tag=D5F88_06855 NZ_QYTI01000056.1 Protein Homology CDS 69457 70836 . + 0 ID=cds-WP_016503125.1;Parent=gene-D5F88_RS06845;Dbxref=GenBank:WP_016503125.1;Name=WP_016503125.1;Ontology_term=GO:0030001,GO:0008324,GO:0015079;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA,potassium ion transmembrane transporter activity|0015079||IEA;go_process=metal ion transport|0030001||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000680110.1;locus_tag=D5F88_RS06845;product=TrkH family potassium uptake protein;protein_id=WP_016503125.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 70849 71520 . + . ID=gene-D5F88_RS06850;Name=D5F88_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06850;old_locus_tag=D5F88_06860 NZ_QYTI01000056.1 Protein Homology CDS 70849 71520 . + 0 ID=cds-WP_016503126.1;Parent=gene-D5F88_RS06850;Dbxref=GenBank:WP_016503126.1;Name=WP_016503126.1;Ontology_term=GO:0030001,GO:0034220,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=metal ion transport|0030001||IEA,monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000850143.1;locus_tag=D5F88_RS06850;product=potassium channel family protein;protein_id=WP_016503126.1;transl_table=11 NZ_QYTI01000056.1 RefSeq gene 71555 72385 . - . ID=gene-D5F88_RS06855;Name=D5F88_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06855;old_locus_tag=D5F88_06865 NZ_QYTI01000056.1 Protein Homology CDS 71555 72385 . - 0 ID=cds-WP_016503127.1;Parent=gene-D5F88_RS06855;Dbxref=GenBank:WP_016503127.1;Name=WP_016503127.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503127.1;locus_tag=D5F88_RS06855;product=energy-coupling factor transporter transmembrane component T family protein;protein_id=WP_016503127.1;transl_table=11 NZ_QYTI01000056.1 RefSeq pseudogene 72378 72631 . - . ID=gene-D5F88_RS06860;Name=D5F88_RS06860;end_range=72631,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06860;old_locus_tag=D5F88_06870;partial=true;pseudo=true NZ_QYTI01000056.1 Protein Homology CDS 72378 72631 . - 2 ID=cds-D5F88_RS06860;Parent=gene-D5F88_RS06860;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=72631,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000651253.1;locus_tag=D5F88_RS06860;partial=true;product=heme ABC transporter ATP-binding protein;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000057.1 1 1099 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000057.1 RefSeq region 1 1099 . + . ID=NZ_QYTI01000057.1:1..1099;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000057.1 RefSeq gene 211 1099 . + . ID=gene-D5F88_RS06865;Name=D5F88_RS06865;end_range=1099,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06865;old_locus_tag=D5F88_06875;partial=true NZ_QYTI01000057.1 Protein Homology CDS 211 1099 . + 0 ID=cds-WP_142997444.1;Parent=gene-D5F88_RS06865;Dbxref=GenBank:WP_142997444.1;Name=WP_142997444.1;Ontology_term=GO:0009252,GO:0071555,GO:0005524,GO:0047480;end_range=1099,.;gbkey=CDS;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647798.1;locus_tag=D5F88_RS06865;partial=true;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_142997444.1;transl_table=11 ##sequence-region NZ_QYTI01000058.1 1 3295 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000058.1 RefSeq region 1 3295 . + . ID=NZ_QYTI01000058.1:1..3295;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000058.1 RefSeq gene 1 250 . - . ID=gene-D5F88_RS06870;Name=D5F88_RS06870;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS06870;old_locus_tag=D5F88_06880;partial=true;start_range=.,1 NZ_QYTI01000058.1 cmsearch rRNA 1 250 . - . ID=rna-D5F88_RS06870;Parent=gene-D5F88_RS06870;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS06870;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_QYTI01000058.1 cmsearch exon 1 250 . - . ID=exon-D5F88_RS06870-1;Parent=rna-D5F88_RS06870;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS06870;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_QYTI01000058.1 RefSeq gene 572 1126 . - . ID=gene-D5F88_RS06875;Name=hpf;gbkey=Gene;gene=hpf;gene_biotype=protein_coding;locus_tag=D5F88_RS06875;old_locus_tag=D5F88_06885 NZ_QYTI01000058.1 Protein Homology CDS 572 1126 . - 0 ID=cds-WP_000599096.1;Parent=gene-D5F88_RS06875;Dbxref=GenBank:WP_000599096.1;Name=WP_000599096.1;Ontology_term=GO:0045182,GO:0005840;gbkey=CDS;gene=hpf;go_component=ribosome|0005840||IEA;go_function=translation regulator activity|0045182||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000599095.1;locus_tag=D5F88_RS06875;product=ribosome hibernation-promoting factor%2C HPF/YfiA family;protein_id=WP_000599096.1;transl_table=11 NZ_QYTI01000058.1 RefSeq gene 1203 1868 . - . ID=gene-D5F88_RS06880;Name=D5F88_RS06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06880;old_locus_tag=D5F88_06890 NZ_QYTI01000058.1 Protein Homology CDS 1203 1868 . - 0 ID=cds-WP_000128287.1;Parent=gene-D5F88_RS06880;Dbxref=GenBank:WP_000128287.1;Name=WP_000128287.1;Ontology_term=GO:0030420;gbkey=CDS;go_process=establishment of competence for transformation|0030420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000128288.1;locus_tag=D5F88_RS06880;product=ComF family protein;protein_id=WP_000128287.1;transl_table=11 NZ_QYTI01000058.1 RefSeq pseudogene 1868 2518 . - . ID=gene-D5F88_RS06885;Name=D5F88_RS06885;end_range=2518,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06885;old_locus_tag=D5F88_06895;partial=true;pseudo=true NZ_QYTI01000058.1 Protein Homology CDS 1868 2518 . - 0 ID=cds-D5F88_RS06885;Parent=gene-D5F88_RS06885;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2518,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771642.1;locus_tag=D5F88_RS06885;partial=true;product=helicase-related protein;pseudo=true;transl_table=11 NZ_QYTI01000058.1 RefSeq pseudogene 2600 3295 . + . ID=gene-D5F88_RS06890;Name=D5F88_RS06890;end_range=3295,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS06890;old_locus_tag=D5F88_06900;partial=true;pseudo=true NZ_QYTI01000058.1 Protein Homology CDS 2600 3295 . + 0 ID=cds-D5F88_RS06890;Parent=gene-D5F88_RS06890;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0004803;end_range=3295,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS06890;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000059.1 1 769 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000059.1 RefSeq region 1 769 . + . ID=NZ_QYTI01000059.1:1..769;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000059.1 RefSeq gene 1 671 . + . ID=gene-D5F88_RS06895;Name=D5F88_RS06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06895;old_locus_tag=D5F88_06905;partial=true;start_range=.,1 NZ_QYTI01000059.1 Protein Homology CDS 1 671 . + 2 ID=cds-WP_124773300.1;Parent=gene-D5F88_RS06895;Dbxref=GenBank:WP_124773300.1;Name=WP_124773300.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002297771.1;locus_tag=D5F88_RS06895;partial=true;product=ATP-grasp domain-containing protein;protein_id=WP_124773300.1;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000006.1 1 1651 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000006.1 RefSeq region 1 1651 . + . ID=NZ_QYTI01000006.1:1..1651;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000006.1 RefSeq gene 1 358 . + . ID=gene-D5F88_RS01455;Name=D5F88_RS01455;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS01455;old_locus_tag=D5F88_01460;partial=true;start_range=.,1 NZ_QYTI01000006.1 cmsearch rRNA 1 358 . + . ID=rna-D5F88_RS01455;Parent=gene-D5F88_RS01455;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01455;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_QYTI01000006.1 cmsearch exon 1 358 . + . ID=exon-D5F88_RS01455-1;Parent=rna-D5F88_RS01455;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01455;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_QYTI01000006.1 RefSeq gene 433 548 . + . ID=gene-D5F88_RS01460;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=D5F88_RS01460;old_locus_tag=D5F88_01465 NZ_QYTI01000006.1 cmsearch rRNA 433 548 . + . ID=rna-D5F88_RS01460;Parent=gene-D5F88_RS01460;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01460;product=5S ribosomal RNA NZ_QYTI01000006.1 cmsearch exon 433 548 . + . ID=exon-D5F88_RS01460-1;Parent=rna-D5F88_RS01460;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01460;product=5S ribosomal RNA NZ_QYTI01000006.1 RefSeq gene 552 624 . + . ID=gene-D5F88_RS01465;Name=D5F88_RS01465;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01465;old_locus_tag=D5F88_01470 NZ_QYTI01000006.1 tRNAscan-SE tRNA 552 624 . + . ID=rna-D5F88_RS01465;Parent=gene-D5F88_RS01465;anticodon=(pos:585..587);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01465;product=tRNA-Val NZ_QYTI01000006.1 tRNAscan-SE exon 552 624 . + . ID=exon-D5F88_RS01465-1;Parent=rna-D5F88_RS01465;anticodon=(pos:585..587);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01465;product=tRNA-Val NZ_QYTI01000006.1 RefSeq gene 627 699 . + . ID=gene-D5F88_RS01470;Name=D5F88_RS01470;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01470;old_locus_tag=D5F88_01475 NZ_QYTI01000006.1 tRNAscan-SE tRNA 627 699 . + . ID=rna-D5F88_RS01470;Parent=gene-D5F88_RS01470;anticodon=(pos:660..662);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01470;product=tRNA-Asp NZ_QYTI01000006.1 tRNAscan-SE exon 627 699 . + . ID=exon-D5F88_RS01470-1;Parent=rna-D5F88_RS01470;anticodon=(pos:660..662);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01470;product=tRNA-Asp NZ_QYTI01000006.1 RefSeq gene 702 774 . + . ID=gene-D5F88_RS01475;Name=D5F88_RS01475;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01475;old_locus_tag=D5F88_01480 NZ_QYTI01000006.1 tRNAscan-SE tRNA 702 774 . + . ID=rna-D5F88_RS01475;Parent=gene-D5F88_RS01475;anticodon=(pos:735..737);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01475;product=tRNA-Lys NZ_QYTI01000006.1 tRNAscan-SE exon 702 774 . + . ID=exon-D5F88_RS01475-1;Parent=rna-D5F88_RS01475;anticodon=(pos:735..737);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01475;product=tRNA-Lys NZ_QYTI01000006.1 RefSeq gene 784 865 . + . ID=gene-D5F88_RS01480;Name=D5F88_RS01480;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01480;old_locus_tag=D5F88_01485 NZ_QYTI01000006.1 tRNAscan-SE tRNA 784 865 . + . ID=rna-D5F88_RS01480;Parent=gene-D5F88_RS01480;anticodon=(pos:818..820);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01480;product=tRNA-Leu NZ_QYTI01000006.1 tRNAscan-SE exon 784 865 . + . ID=exon-D5F88_RS01480-1;Parent=rna-D5F88_RS01480;anticodon=(pos:818..820);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01480;product=tRNA-Leu NZ_QYTI01000006.1 RefSeq gene 876 948 . + . ID=gene-D5F88_RS01485;Name=D5F88_RS01485;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01485;old_locus_tag=D5F88_01490 NZ_QYTI01000006.1 tRNAscan-SE tRNA 876 948 . + . ID=rna-D5F88_RS01485;Parent=gene-D5F88_RS01485;anticodon=(pos:909..911);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01485;product=tRNA-Thr NZ_QYTI01000006.1 tRNAscan-SE exon 876 948 . + . ID=exon-D5F88_RS01485-1;Parent=rna-D5F88_RS01485;anticodon=(pos:909..911);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01485;product=tRNA-Thr NZ_QYTI01000006.1 RefSeq gene 982 1053 . + . ID=gene-D5F88_RS01490;Name=D5F88_RS01490;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01490;old_locus_tag=D5F88_01495 NZ_QYTI01000006.1 tRNAscan-SE tRNA 982 1053 . + . ID=rna-D5F88_RS01490;Parent=gene-D5F88_RS01490;anticodon=(pos:1014..1016);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01490;product=tRNA-Gly NZ_QYTI01000006.1 tRNAscan-SE exon 982 1053 . + . ID=exon-D5F88_RS01490-1;Parent=rna-D5F88_RS01490;anticodon=(pos:1014..1016);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01490;product=tRNA-Gly NZ_QYTI01000006.1 RefSeq gene 1062 1146 . + . ID=gene-D5F88_RS01495;Name=D5F88_RS01495;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01495;old_locus_tag=D5F88_01500 NZ_QYTI01000006.1 tRNAscan-SE tRNA 1062 1146 . + . ID=rna-D5F88_RS01495;Parent=gene-D5F88_RS01495;anticodon=(pos:1096..1098);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01495;product=tRNA-Leu NZ_QYTI01000006.1 tRNAscan-SE exon 1062 1146 . + . ID=exon-D5F88_RS01495-1;Parent=rna-D5F88_RS01495;anticodon=(pos:1096..1098);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01495;product=tRNA-Leu NZ_QYTI01000006.1 RefSeq gene 1158 1231 . + . ID=gene-D5F88_RS01500;Name=D5F88_RS01500;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01500;old_locus_tag=D5F88_01505 NZ_QYTI01000006.1 tRNAscan-SE tRNA 1158 1231 . + . ID=rna-D5F88_RS01500;Parent=gene-D5F88_RS01500;anticodon=(pos:1192..1194);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01500;product=tRNA-Arg NZ_QYTI01000006.1 tRNAscan-SE exon 1158 1231 . + . ID=exon-D5F88_RS01500-1;Parent=rna-D5F88_RS01500;anticodon=(pos:1192..1194);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01500;product=tRNA-Arg NZ_QYTI01000006.1 RefSeq gene 1239 1312 . + . ID=gene-D5F88_RS01505;Name=D5F88_RS01505;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01505;old_locus_tag=D5F88_01510 NZ_QYTI01000006.1 tRNAscan-SE tRNA 1239 1312 . + . ID=rna-D5F88_RS01505;Parent=gene-D5F88_RS01505;anticodon=(pos:1273..1275);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01505;product=tRNA-Pro NZ_QYTI01000006.1 tRNAscan-SE exon 1239 1312 . + . ID=exon-D5F88_RS01505-1;Parent=rna-D5F88_RS01505;anticodon=(pos:1273..1275);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01505;product=tRNA-Pro NZ_QYTI01000006.1 RefSeq gene 1458 1651 . + . ID=gene-D5F88_RS01510;Name=D5F88_RS01510;end_range=1651,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS01510;old_locus_tag=D5F88_01515;partial=true NZ_QYTI01000006.1 cmsearch rRNA 1458 1651 . + . ID=rna-D5F88_RS01510;Parent=gene-D5F88_RS01510;Dbxref=RFAM:RF00177;end_range=1651,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01510;partial=true;product=16S ribosomal RNA NZ_QYTI01000006.1 cmsearch exon 1458 1651 . + . ID=exon-D5F88_RS01510-1;Parent=rna-D5F88_RS01510;Dbxref=RFAM:RF00177;end_range=1651,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01510;partial=true;product=16S ribosomal RNA ##sequence-region NZ_QYTI01000060.1 1 97770 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000060.1 RefSeq region 1 97770 . + . ID=NZ_QYTI01000060.1:1..97770;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000060.1 RefSeq pseudogene 1 376 . + . ID=gene-D5F88_RS06900;Name=cas1;gbkey=Gene;gene=cas1;gene_biotype=pseudogene;locus_tag=D5F88_RS06900;old_locus_tag=D5F88_06910;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000060.1 Protein Homology CDS 1 376 . + 2 ID=cds-D5F88_RS06900;Parent=gene-D5F88_RS06900;Note=frameshifted%3B internal stop%3B incomplete%3B missing N-terminus;Ontology_term=GO:0043571,GO:0004520,GO:0046872;gbkey=CDS;gene=cas1;go_function=DNA endonuclease activity|0004520||IEA,metal ion binding|0046872||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019314881.1;locus_tag=D5F88_RS06900;partial=true;product=CRISPR-associated endonuclease Cas1;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 387 680 . + . ID=gene-D5F88_RS06905;Name=cas2;gbkey=Gene;gene=cas2;gene_biotype=protein_coding;locus_tag=D5F88_RS06905;old_locus_tag=D5F88_06915 NZ_QYTI01000060.1 Protein Homology CDS 387 680 . + 0 ID=cds-WP_000989528.1;Parent=gene-D5F88_RS06905;Dbxref=GenBank:WP_000989528.1;Name=WP_000989528.1;Ontology_term=GO:0043571,GO:0004521;gbkey=CDS;gene=cas2;go_function=RNA endonuclease activity|0004521||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002280569.1;locus_tag=D5F88_RS06905;product=CRISPR-associated endonuclease Cas2;protein_id=WP_000989528.1;transl_table=11 NZ_QYTI01000060.1 RefSeq direct_repeat 827 1524 . + . ID=id-NZ_QYTI01000060.1:827..1524;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=827..858;rpt_unit_seq=gtcgcaccctttgcgggtgcgtggattgaaat NZ_QYTI01000060.1 RefSeq gene 1725 2684 . + . ID=gene-D5F88_RS06910;Name=D5F88_RS06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06910;old_locus_tag=D5F88_06920 NZ_QYTI01000060.1 Protein Homology CDS 1725 2684 . + 0 ID=cds-WP_016502592.1;Parent=gene-D5F88_RS06910;Dbxref=GenBank:WP_016502592.1;Name=WP_016502592.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631803.1;locus_tag=D5F88_RS06910;product=Gfo/Idh/MocA family protein;protein_id=WP_016502592.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 2845 3747 . + . ID=gene-D5F88_RS06915;Name=D5F88_RS06915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06915;old_locus_tag=D5F88_06925 NZ_QYTI01000060.1 Protein Homology CDS 2845 3747 . + 0 ID=cds-WP_016502593.1;Parent=gene-D5F88_RS06915;Dbxref=GenBank:WP_016502593.1;Name=WP_016502593.1;Ontology_term=GO:0030001,GO:0055085,GO:0046873,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metal ion transmembrane transporter activity|0046873||IEA;go_process=metal ion transport|0030001||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000492950.1;locus_tag=D5F88_RS06915;product=magnesium transporter CorA family protein;protein_id=WP_016502593.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 3907 4971 . + . ID=gene-D5F88_RS06920;Name=D5F88_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06920;old_locus_tag=D5F88_06930 NZ_QYTI01000060.1 Protein Homology CDS 3907 4971 . + 0 ID=cds-WP_000021293.1;Parent=gene-D5F88_RS06920;Dbxref=GenBank:WP_000021293.1;Name=WP_000021293.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649463.1;locus_tag=D5F88_RS06920;product=MmcQ/YjbR family DNA-binding protein;protein_id=WP_000021293.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 5086 6078 . + . ID=gene-D5F88_RS06925;Name=asnA;gbkey=Gene;gene=asnA;gene_biotype=protein_coding;locus_tag=D5F88_RS06925;old_locus_tag=D5F88_06935 NZ_QYTI01000060.1 Protein Homology CDS 5086 6078 . + 0 ID=cds-WP_124773302.1;Parent=gene-D5F88_RS06925;Dbxref=GenBank:WP_124773302.1;Name=WP_124773302.1;Ontology_term=GO:0006529,GO:0004071,GO:0005737;gbkey=CDS;gene=asnA;go_component=cytoplasm|0005737||IEA;go_function=aspartate-ammonia ligase activity|0004071||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502595.1;locus_tag=D5F88_RS06925;product=aspartate--ammonia ligase;protein_id=WP_124773302.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 6123 6545 . - . ID=gene-D5F88_RS06930;Name=D5F88_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06930;old_locus_tag=D5F88_06940 NZ_QYTI01000060.1 Protein Homology CDS 6123 6545 . - 0 ID=cds-WP_086163247.1;Parent=gene-D5F88_RS06930;Dbxref=GenBank:WP_086163247.1;Name=WP_086163247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001893380.1;locus_tag=D5F88_RS06930;product=bacteriocin transport accessory protein;protein_id=WP_086163247.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 6702 7241 . + . ID=gene-D5F88_RS06935;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=D5F88_RS06935;old_locus_tag=D5F88_06945 NZ_QYTI01000060.1 Protein Homology CDS 6702 7241 . + 0 ID=cds-WP_086163248.1;Parent=gene-D5F88_RS06935;Dbxref=GenBank:WP_086163248.1;Name=WP_086163248.1;Ontology_term=GO:0031167,GO:0052913;gbkey=CDS;gene=rsmD;go_function=16S rRNA (guanine(966)-N(2))-methyltransferase activity|0052913||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058402.1;locus_tag=D5F88_RS06935;product=16S rRNA (guanine(966)-N(2))-methyltransferase RsmD;protein_id=WP_086163248.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 7253 7543 . + . ID=gene-D5F88_RS06940;Name=D5F88_RS06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06940;old_locus_tag=D5F88_06950 NZ_QYTI01000060.1 Protein Homology CDS 7253 7543 . + 0 ID=cds-WP_000384889.1;Parent=gene-D5F88_RS06940;Dbxref=GenBank:WP_000384889.1;Name=WP_000384889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000384890.1;locus_tag=D5F88_RS06940;product=hypothetical protein;protein_id=WP_000384889.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 7540 8025 . + . ID=gene-D5F88_RS06945;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=D5F88_RS06945;old_locus_tag=D5F88_06955 NZ_QYTI01000060.1 Protein Homology CDS 7540 8025 . + 0 ID=cds-WP_016480407.1;Parent=gene-D5F88_RS06945;Dbxref=GenBank:WP_016480407.1;Name=WP_016480407.1;Ontology_term=GO:0015937,GO:0004595;gbkey=CDS;gene=coaD;go_function=pantetheine-phosphate adenylyltransferase activity|0004595||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000161892.1;locus_tag=D5F88_RS06945;product=pantetheine-phosphate adenylyltransferase;protein_id=WP_016480407.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 8015 9088 . + . ID=gene-D5F88_RS06950;Name=D5F88_RS06950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06950;old_locus_tag=D5F88_06960 NZ_QYTI01000060.1 Protein Homology CDS 8015 9088 . + 0 ID=cds-WP_016480408.1;Parent=gene-D5F88_RS06950;Dbxref=GenBank:WP_016480408.1;Name=WP_016480408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000790656.1;locus_tag=D5F88_RS06950;product=SepM family pheromone-processing serine protease;protein_id=WP_016480408.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 9163 10497 . + . ID=gene-D5F88_RS06955;Name=D5F88_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06955;old_locus_tag=D5F88_06965 NZ_QYTI01000060.1 Protein Homology CDS 9163 10497 . + 0 ID=cds-WP_086163249.1;Parent=gene-D5F88_RS06955;Dbxref=GenBank:WP_086163249.1;Name=WP_086163249.1;Ontology_term=GO:0009166,GO:0000166,GO:0008253,GO:0042578,GO:0046872;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,5'-nucleotidase activity|0008253||IEA,phosphoric ester hydrolase activity|0042578||IEA,metal ion binding|0046872||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644500.1;locus_tag=D5F88_RS06955;product=bifunctional metallophosphatase/5'-nucleotidase;protein_id=WP_086163249.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 10566 11144 . + . ID=gene-D5F88_RS06960;Name=D5F88_RS06960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06960;old_locus_tag=D5F88_06970 NZ_QYTI01000060.1 Protein Homology CDS 10566 11144 . + 0 ID=cds-WP_001224500.1;Parent=gene-D5F88_RS06960;Dbxref=GenBank:WP_001224500.1;Name=WP_001224500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647065.1;locus_tag=D5F88_RS06960;product=YutD family protein;protein_id=WP_001224500.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 11195 12301 . + . ID=gene-D5F88_RS06965;Name=rlmN;gbkey=Gene;gene=rlmN;gene_biotype=protein_coding;locus_tag=D5F88_RS06965;old_locus_tag=D5F88_06975 NZ_QYTI01000060.1 Protein Homology CDS 11195 12301 . + 0 ID=cds-WP_001124994.1;Parent=gene-D5F88_RS06965;Dbxref=GenBank:WP_001124994.1;Name=WP_001124994.1;Ontology_term=GO:0030488,GO:0070475,GO:0008757,GO:0016433;gbkey=CDS;gene=rlmN;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,rRNA (adenine) methyltransferase activity|0016433||IEA;go_process=tRNA methylation|0030488||IEA,rRNA base methylation|0070475||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001124995.1;locus_tag=D5F88_RS06965;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;protein_id=WP_001124994.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 12301 12816 . + . ID=gene-D5F88_RS06970;Name=D5F88_RS06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06970;old_locus_tag=D5F88_06980 NZ_QYTI01000060.1 Protein Homology CDS 12301 12816 . + 0 ID=cds-WP_000919803.1;Parent=gene-D5F88_RS06970;Dbxref=GenBank:WP_000919803.1;Name=WP_000919803.1;Ontology_term=GO:0046677,GO:0071555,GO:0005576;gbkey=CDS;go_component=extracellular region|0005576||IEA;go_process=response to antibiotic|0046677||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631809.1;locus_tag=D5F88_RS06970;product=VanZ family protein;protein_id=WP_000919803.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 12995 14740 . + . ID=gene-D5F88_RS06975;Name=D5F88_RS06975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06975;old_locus_tag=D5F88_06985 NZ_QYTI01000060.1 Protein Homology CDS 12995 14740 . + 0 ID=cds-WP_086163250.1;Parent=gene-D5F88_RS06975;Dbxref=GenBank:WP_086163250.1;Name=WP_086163250.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003086263.1;locus_tag=D5F88_RS06975;product=ABC transporter ATP-binding protein;protein_id=WP_086163250.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 14730 16469 . + . ID=gene-D5F88_RS06980;Name=D5F88_RS06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06980;old_locus_tag=D5F88_06990 NZ_QYTI01000060.1 Protein Homology CDS 14730 16469 . + 0 ID=cds-WP_016502600.1;Parent=gene-D5F88_RS06980;Dbxref=GenBank:WP_016502600.1;Name=WP_016502600.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058404.1;locus_tag=D5F88_RS06980;product=ABC transporter ATP-binding protein;protein_id=WP_016502600.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 16597 17163 . + . ID=gene-D5F88_RS06985;Name=D5F88_RS06985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06985;old_locus_tag=D5F88_06995 NZ_QYTI01000060.1 Protein Homology CDS 16597 17163 . + 0 ID=cds-WP_000925632.1;Parent=gene-D5F88_RS06985;Dbxref=GenBank:WP_000925632.1;Name=WP_000925632.1;Ontology_term=GO:0000162,GO:0004049,GO:0046820;gbkey=CDS;go_function=anthranilate synthase activity|0004049||IEA,4-amino-4-deoxychorismate synthase activity|0046820||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647068.1;locus_tag=D5F88_RS06985;product=aminodeoxychorismate/anthranilate synthase component II;protein_id=WP_000925632.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 17231 17770 . - . ID=gene-D5F88_RS06990;Name=D5F88_RS06990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS06990;old_locus_tag=D5F88_07000 NZ_QYTI01000060.1 Protein Homology CDS 17231 17770 . - 0 ID=cds-WP_000857893.1;Parent=gene-D5F88_RS06990;Dbxref=GenBank:WP_000857893.1;Name=WP_000857893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000857893.1;locus_tag=D5F88_RS06990;product=biotin transporter BioY;protein_id=WP_000857893.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 17771 18763 . - . ID=gene-D5F88_RS06995;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=D5F88_RS06995;old_locus_tag=D5F88_07005 NZ_QYTI01000060.1 Protein Homology CDS 17771 18763 . - 0 ID=cds-WP_000009965.1;Parent=gene-D5F88_RS06995;Dbxref=GenBank:WP_000009965.1;Name=WP_000009965.1;Ontology_term=GO:0009102,GO:0004076,GO:0051536,GO:1904047;gbkey=CDS;gene=bioB;go_function=biotin synthase activity|0004076||IEA,iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000009960.1;locus_tag=D5F88_RS06995;product=biotin synthase BioB;protein_id=WP_000009965.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 18888 19403 . + . ID=gene-D5F88_RS07000;Name=D5F88_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07000;old_locus_tag=D5F88_07010 NZ_QYTI01000060.1 Protein Homology CDS 18888 19403 . + 0 ID=cds-WP_016502602.1;Parent=gene-D5F88_RS07000;Dbxref=GenBank:WP_016502602.1;Name=WP_016502602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000732606.1;locus_tag=D5F88_RS07000;product=hypothetical protein;protein_id=WP_016502602.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 19393 20508 . + . ID=gene-D5F88_RS07005;Name=D5F88_RS07005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07005;old_locus_tag=D5F88_07015 NZ_QYTI01000060.1 Protein Homology CDS 19393 20508 . + 0 ID=cds-WP_016502603.1;Parent=gene-D5F88_RS07005;Dbxref=GenBank:WP_016502603.1;Name=WP_016502603.1;Ontology_term=GO:0006635,GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;go_process=fatty acid beta-oxidation|0006635||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000796101.1;locus_tag=D5F88_RS07005;product=thiolase family protein;protein_id=WP_016502603.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 20501 21730 . + . ID=gene-D5F88_RS07010;Name=D5F88_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07010;old_locus_tag=D5F88_07020 NZ_QYTI01000060.1 Protein Homology CDS 20501 21730 . + 0 ID=cds-WP_086163251.1;Parent=gene-D5F88_RS07010;Dbxref=GenBank:WP_086163251.1;Name=WP_086163251.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631813.1;locus_tag=D5F88_RS07010;product=AMP-binding protein;protein_id=WP_086163251.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 21843 22475 . + . ID=gene-D5F88_RS07015;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=D5F88_RS07015;old_locus_tag=D5F88_07025 NZ_QYTI01000060.1 Protein Homology CDS 21843 22475 . + 0 ID=cds-WP_000949176.1;Parent=gene-D5F88_RS07015;Dbxref=GenBank:WP_000949176.1;Name=WP_000949176.1;Ontology_term=GO:0006281,GO:0140078;gbkey=CDS;gene=nth;go_function=class I DNA-(apurinic or apyrimidinic site) endonuclease activity|0140078||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000949179.1;locus_tag=D5F88_RS07015;product=endonuclease III;protein_id=WP_000949176.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 22476 22871 . - . ID=gene-D5F88_RS07020;Name=D5F88_RS07020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07020;old_locus_tag=D5F88_07030 NZ_QYTI01000060.1 Protein Homology CDS 22476 22871 . - 0 ID=cds-WP_001884316.1;Parent=gene-D5F88_RS07020;Dbxref=GenBank:WP_001884316.1;Name=WP_001884316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001884316.1;locus_tag=D5F88_RS07020;product=prepilin peptidase;protein_id=WP_001884316.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 23026 23235 . + . ID=gene-D5F88_RS07025;Name=D5F88_RS07025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07025;old_locus_tag=D5F88_07035 NZ_QYTI01000060.1 Protein Homology CDS 23026 23235 . + 0 ID=cds-WP_000865866.1;Parent=gene-D5F88_RS07025;Dbxref=GenBank:WP_000865866.1;Name=WP_000865866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000865866.1;locus_tag=D5F88_RS07025;product=YqgQ family protein;protein_id=WP_000865866.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 23232 24200 . + . ID=gene-D5F88_RS07030;Name=D5F88_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07030;old_locus_tag=D5F88_07040 NZ_QYTI01000060.1 Protein Homology CDS 23232 24200 . + 0 ID=cds-WP_000038547.1;Parent=gene-D5F88_RS07030;Dbxref=GenBank:WP_000038547.1;Name=WP_000038547.1;Ontology_term=GO:0006096,GO:0051156,GO:0004340,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=glucokinase activity|0004340||IEA;go_process=glycolytic process|0006096||IEA,glucose 6-phosphate metabolic process|0051156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000038549.1;locus_tag=D5F88_RS07030;product=ROK family glucokinase;protein_id=WP_000038547.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 24212 24592 . + . ID=gene-D5F88_RS07035;Name=D5F88_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07035;old_locus_tag=D5F88_07045 NZ_QYTI01000060.1 Protein Homology CDS 24212 24592 . + 0 ID=cds-WP_000367664.1;Parent=gene-D5F88_RS07035;Dbxref=GenBank:WP_000367664.1;Name=WP_000367664.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480417.1;locus_tag=D5F88_RS07035;product=rhodanese-like domain-containing protein;protein_id=WP_000367664.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 24824 26665 . + . ID=gene-D5F88_RS07040;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=D5F88_RS07040;old_locus_tag=D5F88_07050 NZ_QYTI01000060.1 Protein Homology CDS 24824 26665 . + 0 ID=cds-WP_000183433.1;Parent=gene-D5F88_RS07040;Dbxref=GenBank:WP_000183433.1;Name=WP_000183433.1;Ontology_term=GO:0006412,GO:0006950,GO:0003924,GO:0005525;gbkey=CDS;gene=typA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translation|0006412||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018381299.1;locus_tag=D5F88_RS07040;product=translational GTPase TypA;protein_id=WP_000183433.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 26710 26955 . + . ID=gene-D5F88_RS07045;Name=D5F88_RS07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07045;old_locus_tag=D5F88_07055 NZ_QYTI01000060.1 Protein Homology CDS 26710 26955 . + 0 ID=cds-WP_000499533.1;Parent=gene-D5F88_RS07045;Dbxref=GenBank:WP_000499533.1;Name=WP_000499533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000499534.1;locus_tag=D5F88_RS07045;product=DUF3165 family protein;protein_id=WP_000499533.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 27085 28440 . + . ID=gene-D5F88_RS07050;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=D5F88_RS07050;old_locus_tag=D5F88_07060 NZ_QYTI01000060.1 Protein Homology CDS 27085 28440 . + 0 ID=cds-WP_016502606.1;Parent=gene-D5F88_RS07050;Dbxref=GenBank:WP_016502606.1;Name=WP_016502606.1;Ontology_term=GO:0008360,GO:0009252,GO:0051301,GO:0005524,GO:0008764,GO:0005737;gbkey=CDS;gene=murD;go_component=cytoplasm|0005737||IEA;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000849675.1;locus_tag=D5F88_RS07050;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=WP_016502606.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 28443 29519 . + . ID=gene-D5F88_RS07055;Name=D5F88_RS07055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07055;old_locus_tag=D5F88_07065 NZ_QYTI01000060.1 Protein Homology CDS 28443 29519 . + 0 ID=cds-WP_016502607.1;Parent=gene-D5F88_RS07055;Dbxref=GenBank:WP_016502607.1;Name=WP_016502607.1;Ontology_term=GO:0005975,GO:0007049,GO:0008360,GO:0009252,GO:0030259,GO:0051301,GO:0071555,GO:0050511,GO:0051991,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA,UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2%2C6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity|0051991||IEA;go_process=carbohydrate metabolic process|0005975||IEA,cell cycle|0007049||IEA,regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,obsolete lipid glycosylation|0030259||IEA,cell division|0051301||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649469.1;locus_tag=D5F88_RS07055;product=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase;protein_id=WP_016502607.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 29523 30659 . + . ID=gene-D5F88_RS07060;Name=D5F88_RS07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07060;old_locus_tag=D5F88_07070 NZ_QYTI01000060.1 Protein Homology CDS 29523 30659 . + 0 ID=cds-WP_124759389.1;Parent=gene-D5F88_RS07060;Dbxref=GenBank:WP_124759389.1;Name=WP_124759389.1;Ontology_term=GO:0043093,GO:0051301;gbkey=CDS;go_process=FtsZ-dependent cytokinesis|0043093||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001124859.1;locus_tag=D5F88_RS07060;product=cell division protein FtsQ/DivIB;protein_id=WP_124759389.1;transl_table=11 NZ_QYTI01000060.1 RefSeq pseudogene 30932 32125 . + . ID=gene-D5F88_RS07065;Name=ftsA;end_range=32125,.;gbkey=Gene;gene=ftsA;gene_biotype=pseudogene;locus_tag=D5F88_RS07065;old_locus_tag=D5F88_07075;partial=true;pseudo=true NZ_QYTI01000060.1 Protein Homology CDS 30932 32125 . + 0 ID=cds-D5F88_RS07065;Parent=gene-D5F88_RS07065;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0043093,GO:0005515,GO:0005524;end_range=32125,.;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002983860.1;locus_tag=D5F88_RS07065;partial=true;product=cell division protein FtsA;pseudo=true;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 32099 32305 . + . ID=gene-D5F88_RS11915;Name=D5F88_RS11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11915 NZ_QYTI01000060.1 Protein Homology CDS 32099 32305 . + 0 ID=cds-WP_370443801.1;Parent=gene-D5F88_RS11915;Dbxref=GenBank:WP_370443801.1;Name=WP_370443801.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023409.6;locus_tag=D5F88_RS11915;product=cell division protein FtsA C-terminal domain-containing protein;protein_id=WP_370443801.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 32327 33607 . + . ID=gene-D5F88_RS07070;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=D5F88_RS07070;old_locus_tag=D5F88_07080 NZ_QYTI01000060.1 Protein Homology CDS 32327 33607 . + 0 ID=cds-WP_000232007.1;Parent=gene-D5F88_RS07070;Dbxref=GenBank:WP_000232007.1;Name=WP_000232007.1;Ontology_term=GO:0000910,GO:0003924,GO:0005525;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650336.1;locus_tag=D5F88_RS07070;product=cell division protein FtsZ;protein_id=WP_000232007.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 33613 34287 . + . ID=gene-D5F88_RS07075;Name=D5F88_RS07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07075;old_locus_tag=D5F88_07085 NZ_QYTI01000060.1 Protein Homology CDS 33613 34287 . + 0 ID=cds-WP_016502608.1;Parent=gene-D5F88_RS07075;Dbxref=GenBank:WP_016502608.1;Name=WP_016502608.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000981484.1;locus_tag=D5F88_RS07075;product=YggS family pyridoxal phosphate-dependent enzyme;protein_id=WP_016502608.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 34299 34904 . + . ID=gene-D5F88_RS07080;Name=D5F88_RS07080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07080;old_locus_tag=D5F88_07090 NZ_QYTI01000060.1 Protein Homology CDS 34299 34904 . + 0 ID=cds-WP_001185362.1;Parent=gene-D5F88_RS07080;Dbxref=GenBank:WP_001185362.1;Name=WP_001185362.1;Ontology_term=GO:0000917,GO:0043093,GO:0090529;gbkey=CDS;go_process=division septum assembly|0000917||IEA,FtsZ-dependent cytokinesis|0043093||IEA,cell septum assembly|0090529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001185364.1;locus_tag=D5F88_RS07080;product=cell division protein SepF;protein_id=WP_001185362.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 34907 35161 . + . ID=gene-D5F88_RS07085;Name=D5F88_RS07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07085;old_locus_tag=D5F88_07095 NZ_QYTI01000060.1 Protein Homology CDS 34907 35161 . + 0 ID=cds-WP_000604717.1;Parent=gene-D5F88_RS07085;Dbxref=GenBank:WP_000604717.1;Name=WP_000604717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000604718.1;locus_tag=D5F88_RS07085;product=YggT family protein;protein_id=WP_000604717.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 35163 35951 . + . ID=gene-D5F88_RS07090;Name=D5F88_RS07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07090;old_locus_tag=D5F88_07100 NZ_QYTI01000060.1 Protein Homology CDS 35163 35951 . + 0 ID=cds-WP_016502609.1;Parent=gene-D5F88_RS07090;Dbxref=GenBank:WP_016502609.1;Name=WP_016502609.1;Ontology_term=GO:0003723;gbkey=CDS;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649471.1;locus_tag=D5F88_RS07090;product=YlmH family RNA-binding protein;protein_id=WP_016502609.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 35961 36731 . + . ID=gene-D5F88_RS07095;Name=D5F88_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07095;old_locus_tag=D5F88_07105 NZ_QYTI01000060.1 Protein Homology CDS 35961 36731 . + 0 ID=cds-WP_001131467.1;Parent=gene-D5F88_RS07095;Dbxref=GenBank:WP_001131467.1;Name=WP_001131467.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001131466.1;locus_tag=D5F88_RS07095;product=DivIVA domain-containing protein;protein_id=WP_001131467.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 37016 39808 . + . ID=gene-D5F88_RS07100;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=D5F88_RS07100;old_locus_tag=D5F88_07110 NZ_QYTI01000060.1 Protein Homology CDS 37016 39808 . + 0 ID=cds-WP_016502610.1;Parent=gene-D5F88_RS07100;Dbxref=GenBank:WP_016502610.1;Name=WP_016502610.1;Ontology_term=GO:0006428,GO:0000166,GO:0004822,GO:0005524;gbkey=CDS;gene=ileS;go_function=nucleotide binding|0000166||IEA,isoleucine-tRNA ligase activity|0004822||IEA,ATP binding|0005524||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000768163.1;locus_tag=D5F88_RS07100;product=isoleucine--tRNA ligase;protein_id=WP_016502610.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 39925 40227 . - . ID=gene-D5F88_RS07105;Name=D5F88_RS07105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07105;old_locus_tag=D5F88_07115 NZ_QYTI01000060.1 Protein Homology CDS 39925 40227 . - 0 ID=cds-WP_001237035.1;Parent=gene-D5F88_RS07105;Dbxref=GenBank:WP_001237035.1;Name=WP_001237035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647579.1;locus_tag=D5F88_RS07105;product=DUF1827 family protein;protein_id=WP_001237035.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 40291 40746 . - . ID=gene-D5F88_RS07110;Name=D5F88_RS07110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07110;old_locus_tag=D5F88_07120 NZ_QYTI01000060.1 Protein Homology CDS 40291 40746 . - 0 ID=cds-WP_000184290.1;Parent=gene-D5F88_RS07110;Dbxref=GenBank:WP_000184290.1;Name=WP_000184290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000184293.1;locus_tag=D5F88_RS07110;product=NUDIX hydrolase;protein_id=WP_000184290.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 40932 43193 . - . ID=gene-D5F88_RS07115;Name=D5F88_RS07115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07115;old_locus_tag=D5F88_07125 NZ_QYTI01000060.1 Protein Homology CDS 40932 43193 . - 0 ID=cds-WP_016502611.1;Parent=gene-D5F88_RS07115;Dbxref=GenBank:WP_016502611.1;Name=WP_016502611.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650651.1;locus_tag=D5F88_RS07115;product=ATP-dependent Clp protease ATP-binding subunit;protein_id=WP_016502611.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 43491 43721 . + . ID=gene-D5F88_RS07125;Name=D5F88_RS07125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07125;old_locus_tag=D5F88_07135 NZ_QYTI01000060.1 Protein Homology CDS 43491 43721 . + 0 ID=cds-WP_000443582.1;Parent=gene-D5F88_RS07125;Dbxref=GenBank:WP_000443582.1;Name=WP_000443582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005592360.1;locus_tag=D5F88_RS07125;product=DUF1797 family protein;protein_id=WP_000443582.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 43861 44553 . + . ID=gene-D5F88_RS07130;Name=D5F88_RS07130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07130;old_locus_tag=D5F88_07140 NZ_QYTI01000060.1 Protein Homology CDS 43861 44553 . + 0 ID=cds-WP_001011647.1;Parent=gene-D5F88_RS07130;Dbxref=GenBank:WP_001011647.1;Name=WP_001011647.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001011649.1;locus_tag=D5F88_RS07130;product=amino acid ABC transporter permease;protein_id=WP_001011647.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 44546 45280 . + . ID=gene-D5F88_RS07135;Name=D5F88_RS07135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07135;old_locus_tag=D5F88_07145 NZ_QYTI01000060.1 Protein Homology CDS 44546 45280 . + 0 ID=cds-WP_000230128.1;Parent=gene-D5F88_RS07135;Dbxref=GenBank:WP_000230128.1;Name=WP_000230128.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019805208.1;locus_tag=D5F88_RS07135;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_000230128.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 45567 47261 . + . ID=gene-D5F88_RS07140;Name=D5F88_RS07140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07140;old_locus_tag=D5F88_07150 NZ_QYTI01000060.1 Protein Homology CDS 45567 47261 . + 0 ID=cds-WP_001106852.1;Parent=gene-D5F88_RS07140;Dbxref=GenBank:WP_001106852.1;Name=WP_001106852.1;Ontology_term=GO:0016868;gbkey=CDS;go_function=intramolecular phosphotransferase activity|0016868||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001106850.1;locus_tag=D5F88_RS07140;product=phospho-sugar mutase;protein_id=WP_001106852.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 47400 48254 . + . ID=gene-D5F88_RS07145;Name=D5F88_RS07145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07145;old_locus_tag=D5F88_07155 NZ_QYTI01000060.1 Protein Homology CDS 47400 48254 . + 0 ID=cds-WP_000137498.1;Parent=gene-D5F88_RS07145;Dbxref=GenBank:WP_000137498.1;Name=WP_000137498.1;Ontology_term=GO:0004488;gbkey=CDS;go_function=methylenetetrahydrofolate dehydrogenase (NADP+) activity|0004488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000137498.1;locus_tag=D5F88_RS07145;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase;protein_id=WP_000137498.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 48251 49087 . + . ID=gene-D5F88_RS07150;Name=D5F88_RS07150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07150;old_locus_tag=D5F88_07160 NZ_QYTI01000060.1 Protein Homology CDS 48251 49087 . + 0 ID=cds-WP_000634978.1;Parent=gene-D5F88_RS07150;Dbxref=GenBank:WP_000634978.1;Name=WP_000634978.1;Ontology_term=GO:0016836;gbkey=CDS;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000634980.1;locus_tag=D5F88_RS07150;product=NAD(P)H-hydrate dehydratase;protein_id=WP_000634978.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 49213 50553 . + . ID=gene-D5F88_RS07155;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=D5F88_RS07155;old_locus_tag=D5F88_07165 NZ_QYTI01000060.1 Protein Homology CDS 49213 50553 . + 0 ID=cds-WP_016502612.1;Parent=gene-D5F88_RS07155;Dbxref=GenBank:WP_016502612.1;Name=WP_016502612.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001286947.1;locus_tag=D5F88_RS07155;product=exodeoxyribonuclease VII large subunit;protein_id=WP_016502612.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 50531 50746 . + . ID=gene-D5F88_RS07160;Name=D5F88_RS07160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07160;old_locus_tag=D5F88_07170 NZ_QYTI01000060.1 Protein Homology CDS 50531 50746 . + 0 ID=cds-WP_001280898.1;Parent=gene-D5F88_RS07160;Dbxref=GenBank:WP_001280898.1;Name=WP_001280898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001280900.1;locus_tag=D5F88_RS07160;product=exodeoxyribonuclease VII small subunit;protein_id=WP_001280898.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 50746 51618 . + . ID=gene-D5F88_RS07165;Name=D5F88_RS07165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07165;old_locus_tag=D5F88_07175 NZ_QYTI01000060.1 Protein Homology CDS 50746 51618 . + 0 ID=cds-WP_000256279.1;Parent=gene-D5F88_RS07165;Dbxref=GenBank:WP_000256279.1;Name=WP_000256279.1;Ontology_term=GO:0008299,GO:0004659,GO:0046872;gbkey=CDS;go_function=prenyltransferase activity|0004659||IEA,metal ion binding|0046872||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000256278.1;locus_tag=D5F88_RS07165;product=polyprenyl synthetase family protein;protein_id=WP_000256279.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 51611 52438 . + . ID=gene-D5F88_RS07170;Name=D5F88_RS07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07170;old_locus_tag=D5F88_07180 NZ_QYTI01000060.1 Protein Homology CDS 51611 52438 . + 0 ID=cds-WP_001041037.1;Parent=gene-D5F88_RS07170;Dbxref=GenBank:WP_001041037.1;Name=WP_001041037.1;Ontology_term=GO:0032259,GO:0003723,GO:0008168;gbkey=CDS;go_function=RNA binding|0003723||IEA,methyltransferase activity|0008168||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650752.1;locus_tag=D5F88_RS07170;product=TlyA family RNA methyltransferase;protein_id=WP_001041037.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 52425 52898 . + . ID=gene-D5F88_RS07175;Name=D5F88_RS07175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07175;old_locus_tag=D5F88_07185 NZ_QYTI01000060.1 Protein Homology CDS 52425 52898 . + 0 ID=cds-WP_000747940.1;Parent=gene-D5F88_RS07175;Dbxref=GenBank:WP_000747940.1;Name=WP_000747940.1;Ontology_term=GO:1900079,GO:0003677,GO:0003700,GO:0034618;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,arginine binding|0034618||IEA;go_process=regulation of arginine biosynthetic process|1900079||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647076.1;locus_tag=D5F88_RS07175;product=arginine repressor;protein_id=WP_000747940.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 52910 54568 . + . ID=gene-D5F88_RS07180;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=D5F88_RS07180;old_locus_tag=D5F88_07190 NZ_QYTI01000060.1 Protein Homology CDS 52910 54568 . + 0 ID=cds-WP_016480429.1;Parent=gene-D5F88_RS07180;Dbxref=GenBank:WP_016480429.1;Name=WP_016480429.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000923612.1;locus_tag=D5F88_RS07180;product=DNA repair protein RecN;protein_id=WP_016480429.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 54691 55527 . + . ID=gene-D5F88_RS07185;Name=D5F88_RS07185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07185;old_locus_tag=D5F88_07195 NZ_QYTI01000060.1 Protein Homology CDS 54691 55527 . + 0 ID=cds-WP_016480430.1;Parent=gene-D5F88_RS07185;Dbxref=GenBank:WP_016480430.1;Name=WP_016480430.1;Ontology_term=GO:0005504;gbkey=CDS;go_function=fatty acid binding|0005504||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000034838.1;locus_tag=D5F88_RS07185;product=DegV family protein;protein_id=WP_016480430.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 55520 56359 . + . ID=gene-D5F88_RS07190;Name=D5F88_RS07190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07190;old_locus_tag=D5F88_07200 NZ_QYTI01000060.1 Protein Homology CDS 55520 56359 . + 0 ID=cds-WP_041165657.1;Parent=gene-D5F88_RS07190;Dbxref=GenBank:WP_041165657.1;Name=WP_041165657.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001035225.1;locus_tag=D5F88_RS07190;product=SGNH/GDSL hydrolase family protein;protein_id=WP_041165657.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 56334 56936 . + . ID=gene-D5F88_RS07195;Name=D5F88_RS07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07195;old_locus_tag=D5F88_07205 NZ_QYTI01000060.1 Protein Homology CDS 56334 56936 . + 0 ID=cds-WP_016480432.1;Parent=gene-D5F88_RS07195;Dbxref=GenBank:WP_016480432.1;Name=WP_016480432.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647077.1;locus_tag=D5F88_RS07195;product=YpmS family protein;protein_id=WP_016480432.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 57039 57314 . + . ID=gene-D5F88_RS07200;Name=D5F88_RS07200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07200;old_locus_tag=D5F88_07210 NZ_QYTI01000060.1 Protein Homology CDS 57039 57314 . + 0 ID=cds-WP_001284634.1;Parent=gene-D5F88_RS07200;Dbxref=GenBank:WP_001284634.1;Name=WP_001284634.1;Ontology_term=GO:0030261,GO:0003677,GO:0030527;gbkey=CDS;go_function=DNA binding|0003677||IEA,structural constituent of chromatin|0030527||IEA;go_process=chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002950996.1;locus_tag=D5F88_RS07200;product=HU family DNA-binding protein;protein_id=WP_001284634.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 57511 57708 . + . ID=gene-D5F88_RS07205;Name=D5F88_RS07205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07205;old_locus_tag=D5F88_07215 NZ_QYTI01000060.1 Protein Homology CDS 57511 57708 . + 0 ID=cds-WP_001290370.1;Parent=gene-D5F88_RS07205;Dbxref=GenBank:WP_001290370.1;Name=WP_001290370.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001290369.1;locus_tag=D5F88_RS07205;product=hypothetical protein;protein_id=WP_001290370.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 57752 58684 . - . ID=gene-D5F88_RS07210;Name=D5F88_RS07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07210;old_locus_tag=D5F88_07220 NZ_QYTI01000060.1 Protein Homology CDS 57752 58684 . - 0 ID=cds-WP_000254063.1;Parent=gene-D5F88_RS07210;Dbxref=GenBank:WP_000254063.1;Name=WP_000254063.1;Ontology_term=GO:0006221,GO:0004152;gbkey=CDS;go_function=dihydroorotate dehydrogenase activity|0004152||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000254063.1;locus_tag=D5F88_RS07210;product=dihydroorotate oxidase;protein_id=WP_000254063.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 58872 60107 . - . ID=gene-D5F88_RS07215;Name=D5F88_RS07215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07215;old_locus_tag=D5F88_07225 NZ_QYTI01000060.1 Protein Homology CDS 58872 60107 . - 0 ID=cds-WP_016502615.1;Parent=gene-D5F88_RS07215;Dbxref=GenBank:WP_016502615.1;Name=WP_016502615.1;Ontology_term=GO:0008360,GO:0009252,GO:0071555,GO:0016755,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=aminoacyltransferase activity|0016755||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001185395.1;locus_tag=D5F88_RS07215;product=aminoacyltransferase;protein_id=WP_016502615.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 60126 61337 . - . ID=gene-D5F88_RS07220;Name=D5F88_RS07220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07220;old_locus_tag=D5F88_07230 NZ_QYTI01000060.1 Protein Homology CDS 60126 61337 . - 0 ID=cds-WP_000285514.1;Parent=gene-D5F88_RS07220;Dbxref=GenBank:WP_000285514.1;Name=WP_000285514.1;Ontology_term=GO:0008360,GO:0009252,GO:0071555,GO:0016755,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=aminoacyltransferase activity|0016755||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000285508.1;locus_tag=D5F88_RS07220;product=aminoacyltransferase;protein_id=WP_000285514.1;transl_table=11 NZ_QYTI01000060.1 RefSeq pseudogene 61350 62570 . - . ID=gene-D5F88_RS07225;Name=D5F88_RS07225;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS07225;old_locus_tag=D5F88_07235;pseudo=true NZ_QYTI01000060.1 Protein Homology CDS 61350 62570 . - 0 ID=cds-D5F88_RS07225;Parent=gene-D5F88_RS07225;Note=internal stop;Ontology_term=GO:0008360,GO:0009252,GO:0071555,GO:0016755,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=aminoacyltransferase activity|0016755||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009854600.1;locus_tag=D5F88_RS07225;product=aminoacyltransferase;pseudo=true;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 62570 63382 . - . ID=gene-D5F88_RS07230;Name=yidA;gbkey=Gene;gene=yidA;gene_biotype=protein_coding;locus_tag=D5F88_RS07230;old_locus_tag=D5F88_07240 NZ_QYTI01000060.1 Protein Homology CDS 62570 63382 . - 0 ID=cds-WP_016480435.1;Parent=gene-D5F88_RS07230;Dbxref=GenBank:WP_016480435.1;Name=WP_016480435.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yidA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000200665.1;locus_tag=D5F88_RS07230;product=sugar-phosphatase;protein_id=WP_016480435.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 63453 64769 . - . ID=gene-D5F88_RS07235;Name=D5F88_RS07235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07235;old_locus_tag=D5F88_07245 NZ_QYTI01000060.1 Protein Homology CDS 63453 64769 . - 0 ID=cds-WP_016502619.1;Parent=gene-D5F88_RS07235;Dbxref=GenBank:WP_016502619.1;Name=WP_016502619.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646365.1;locus_tag=D5F88_RS07235;product=HD domain-containing protein;protein_id=WP_016502619.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 64845 65231 . + . ID=gene-D5F88_RS07240;Name=D5F88_RS07240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07240;old_locus_tag=D5F88_07250 NZ_QYTI01000060.1 Protein Homology CDS 64845 65231 . + 0 ID=cds-WP_001903189.1;Parent=gene-D5F88_RS07240;Dbxref=GenBank:WP_001903189.1;Name=WP_001903189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000764119.1;locus_tag=D5F88_RS07240;product=DUF1934 domain-containing protein;protein_id=WP_001903189.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 65575 68259 . + . ID=gene-D5F88_RS07245;Name=D5F88_RS07245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07245;old_locus_tag=D5F88_07255 NZ_QYTI01000060.1 Protein Homology CDS 65575 68259 . + 0 ID=cds-WP_000910750.1;Parent=gene-D5F88_RS07245;Dbxref=GenBank:WP_000910750.1;Name=WP_000910750.1;Ontology_term=GO:0006816,GO:0005388,GO:0005524,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=P-type calcium transporter activity|0005388||IEA,ATP binding|0005524||IEA;go_process=calcium ion transport|0006816||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771360.1;locus_tag=D5F88_RS07245;product=calcium-translocating P-type ATPase%2C PMCA-type;protein_id=WP_000910750.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 68304 69164 . - . ID=gene-D5F88_RS07250;Name=D5F88_RS07250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07250;old_locus_tag=D5F88_07260 NZ_QYTI01000060.1 Protein Homology CDS 68304 69164 . - 0 ID=cds-WP_086163255.1;Parent=gene-D5F88_RS07250;Dbxref=GenBank:WP_086163255.1;Name=WP_086163255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000163483.1;locus_tag=D5F88_RS07250;product=metallophosphoesterase;protein_id=WP_086163255.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 69316 71247 . + . ID=gene-D5F88_RS07255;Name=D5F88_RS07255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07255;old_locus_tag=D5F88_07265 NZ_QYTI01000060.1 Protein Homology CDS 69316 71247 . + 0 ID=cds-WP_086163256.1;Parent=gene-D5F88_RS07255;Dbxref=GenBank:WP_086163256.1;Name=WP_086163256.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000064640.1;locus_tag=D5F88_RS07255;product=fructose-1%2C6-bisphosphatase;protein_id=WP_086163256.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 71337 72461 . + . ID=gene-D5F88_RS07260;Name=queG;gbkey=Gene;gene=queG;gene_biotype=protein_coding;locus_tag=D5F88_RS07260;old_locus_tag=D5F88_07270 NZ_QYTI01000060.1 Protein Homology CDS 71337 72461 . + 0 ID=cds-WP_016502624.1;Parent=gene-D5F88_RS07260;Dbxref=GenBank:WP_016502624.1;Name=WP_016502624.1;Ontology_term=GO:0008033,GO:0008616,GO:0051539,GO:0052693;gbkey=CDS;gene=queG;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=tRNA processing|0008033||IEA,tRNA queuosine(34) biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000351638.1;locus_tag=D5F88_RS07260;product=tRNA epoxyqueuosine(34) reductase QueG;protein_id=WP_016502624.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 72530 73628 . + . ID=gene-D5F88_RS07265;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=D5F88_RS07265;old_locus_tag=D5F88_07275 NZ_QYTI01000060.1 Protein Homology CDS 72530 72601 . + 0 ID=cds-WP_011324939.1;Parent=gene-D5F88_RS07265;Dbxref=GenBank:WP_011324939.1;Name=WP_011324939.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011889043.1;locus_tag=D5F88_RS07265;product=peptide chain release factor 2;protein_id=WP_011324939.1;transl_table=11 NZ_QYTI01000060.1 Protein Homology CDS 72603 73628 . + 0 ID=cds-WP_011324939.1;Parent=gene-D5F88_RS07265;Dbxref=GenBank:WP_011324939.1;Name=WP_011324939.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011889043.1;locus_tag=D5F88_RS07265;product=peptide chain release factor 2;protein_id=WP_011324939.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 73647 74339 . + . ID=gene-D5F88_RS07270;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=D5F88_RS07270;old_locus_tag=D5F88_07280 NZ_QYTI01000060.1 Protein Homology CDS 73647 74339 . + 0 ID=cds-WP_001173889.1;Parent=gene-D5F88_RS07270;Dbxref=GenBank:WP_001173889.1;Name=WP_001173889.1;Ontology_term=GO:0000910,GO:0005524;gbkey=CDS;gene=ftsE;go_function=ATP binding|0005524||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014294955.1;locus_tag=D5F88_RS07270;product=cell division ATP-binding protein FtsE;protein_id=WP_001173889.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 74323 75252 . + . ID=gene-D5F88_RS07275;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=D5F88_RS07275;old_locus_tag=D5F88_07285 NZ_QYTI01000060.1 Protein Homology CDS 74323 75252 . + 0 ID=cds-WP_000236202.1;Parent=gene-D5F88_RS07275;Dbxref=GenBank:WP_000236202.1;Name=WP_000236202.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ftsX;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768486.1;locus_tag=D5F88_RS07275;product=permease-like cell division protein FtsX;protein_id=WP_000236202.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 75305 76015 . - . ID=gene-D5F88_RS07280;Name=D5F88_RS07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07280;old_locus_tag=D5F88_07290 NZ_QYTI01000060.1 Protein Homology CDS 75305 76015 . - 0 ID=cds-WP_086163257.1;Parent=gene-D5F88_RS07280;Dbxref=GenBank:WP_086163257.1;Name=WP_086163257.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001022568.1;locus_tag=D5F88_RS07280;product=alpha/beta hydrolase;protein_id=WP_086163257.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 76012 76647 . - . ID=gene-D5F88_RS07285;Name=D5F88_RS07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07285;old_locus_tag=D5F88_07295 NZ_QYTI01000060.1 Protein Homology CDS 76012 76647 . - 0 ID=cds-WP_016502626.1;Parent=gene-D5F88_RS07285;Dbxref=GenBank:WP_016502626.1;Name=WP_016502626.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000708399.1;locus_tag=D5F88_RS07285;product=MBL fold metallo-hydrolase;protein_id=WP_016502626.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 76878 77642 . + . ID=gene-D5F88_RS07290;Name=D5F88_RS07290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07290;old_locus_tag=D5F88_07300 NZ_QYTI01000060.1 Protein Homology CDS 76878 77642 . + 0 ID=cds-WP_000048144.1;Parent=gene-D5F88_RS07290;Dbxref=GenBank:WP_000048144.1;Name=WP_000048144.1;Ontology_term=GO:0045150,GO:0019152;gbkey=CDS;go_function=acetoin dehydrogenase (NAD+) activity|0019152||IEA;go_process=acetoin catabolic process|0045150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000048144.1;locus_tag=D5F88_RS07290;product=(S)-acetoin forming diacetyl reductase;protein_id=WP_000048144.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 77792 80257 . + . ID=gene-D5F88_RS07295;Name=D5F88_RS07295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07295;old_locus_tag=D5F88_07305 NZ_QYTI01000060.1 Protein Homology CDS 77792 80257 . + 0 ID=cds-WP_307777617.1;Parent=gene-D5F88_RS07295;Dbxref=GenBank:WP_307777617.1;Name=WP_307777617.1;Ontology_term=GO:0006139,GO:0006260,GO:0003677,GO:0003887,GO:0004386,GO:0005524,GO:0008408;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA,DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058430.1;locus_tag=D5F88_RS07295;product=bifunctional DnaQ family exonuclease/ATP-dependent helicase;protein_id=WP_307777617.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 80343 81536 . + . ID=gene-D5F88_RS07300;Name=D5F88_RS07300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07300;old_locus_tag=D5F88_07310 NZ_QYTI01000060.1 Protein Homology CDS 80343 81536 . + 0 ID=cds-WP_000221826.1;Parent=gene-D5F88_RS07300;Dbxref=GenBank:WP_000221826.1;Name=WP_000221826.1;Ontology_term=GO:0009058,GO:0008483,GO:0030170;gbkey=CDS;go_function=transaminase activity|0008483||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000221826.1;locus_tag=D5F88_RS07300;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_000221826.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 81557 82903 . + . ID=gene-D5F88_RS07305;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;locus_tag=D5F88_RS07305;old_locus_tag=D5F88_07315 NZ_QYTI01000060.1 Protein Homology CDS 81557 82903 . + 0 ID=cds-WP_124773304.1;Parent=gene-D5F88_RS07305;Dbxref=GenBank:WP_124773304.1;Name=WP_124773304.1;Ontology_term=GO:0006421,GO:0004816,GO:0005524;gbkey=CDS;gene=asnS;go_function=asparagine-tRNA ligase activity|0004816||IEA,ATP binding|0005524||IEA;go_process=asparaginyl-tRNA aminoacylation|0006421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000038477.1;locus_tag=D5F88_RS07305;product=asparagine--tRNA ligase;protein_id=WP_124773304.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 82943 83500 . - . ID=gene-D5F88_RS07310;Name=D5F88_RS07310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07310;old_locus_tag=D5F88_07320 NZ_QYTI01000060.1 Protein Homology CDS 82943 83500 . - 0 ID=cds-WP_016502630.1;Parent=gene-D5F88_RS07310;Dbxref=GenBank:WP_016502630.1;Name=WP_016502630.1;Ontology_term=GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502630.1;locus_tag=D5F88_RS07310;product=ECF transporter S component;protein_id=WP_016502630.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 83497 84480 . - . ID=gene-D5F88_RS07315;Name=D5F88_RS07315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07315;old_locus_tag=D5F88_07325 NZ_QYTI01000060.1 Protein Homology CDS 83497 84480 . - 0 ID=cds-WP_086163260.1;Parent=gene-D5F88_RS07315;Dbxref=GenBank:WP_086163260.1;Name=WP_086163260.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001031103.1;locus_tag=D5F88_RS07315;product=nucleoside hydrolase;protein_id=WP_086163260.1;transl_table=11 NZ_QYTI01000060.1 cmsearch riboswitch 84624 84668 . - . ID=id-NZ_QYTI01000060.1:84624..84668;Dbxref=RFAM:RF00522;Note=PreQ1 riboswitch class I;bound_moiety=preQ1;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_QYTI01000060.1 RefSeq gene 84726 85139 . - . ID=gene-D5F88_RS07325;Name=D5F88_RS07325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07325;old_locus_tag=D5F88_07335 NZ_QYTI01000060.1 Protein Homology CDS 84726 85139 . - 0 ID=cds-WP_000965179.1;Parent=gene-D5F88_RS07325;Dbxref=GenBank:WP_000965179.1;Name=WP_000965179.1;Ontology_term=GO:0006979,GO:0004601;gbkey=CDS;go_function=peroxidase activity|0004601||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771875.1;locus_tag=D5F88_RS07325;product=OsmC family protein;protein_id=WP_000965179.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 85293 86183 . + . ID=gene-D5F88_RS07330;Name=rapZ;gbkey=Gene;gene=rapZ;gene_biotype=protein_coding;locus_tag=D5F88_RS07330;old_locus_tag=D5F88_07340 NZ_QYTI01000060.1 Protein Homology CDS 85293 86183 . + 0 ID=cds-WP_086163261.1;Parent=gene-D5F88_RS07330;Dbxref=GenBank:WP_086163261.1;Name=WP_086163261.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rapZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001278849.1;locus_tag=D5F88_RS07330;product=RNase adapter RapZ;protein_id=WP_086163261.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 86180 87154 . + . ID=gene-D5F88_RS07335;Name=D5F88_RS07335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07335;old_locus_tag=D5F88_07345 NZ_QYTI01000060.1 Protein Homology CDS 86180 87154 . + 0 ID=cds-WP_016502634.1;Parent=gene-D5F88_RS07335;Dbxref=GenBank:WP_016502634.1;Name=WP_016502634.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001231103.1;locus_tag=D5F88_RS07335;product=YvcK family protein;protein_id=WP_016502634.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 87151 88062 . + . ID=gene-D5F88_RS07340;Name=whiA;gbkey=Gene;gene=whiA;gene_biotype=protein_coding;locus_tag=D5F88_RS07340;old_locus_tag=D5F88_07350 NZ_QYTI01000060.1 Protein Homology CDS 87151 88062 . + 0 ID=cds-WP_000011319.1;Parent=gene-D5F88_RS07340;Dbxref=GenBank:WP_000011319.1;Name=WP_000011319.1;Ontology_term=GO:0043937,GO:0003677;gbkey=CDS;gene=whiA;go_function=DNA binding|0003677||IEA;go_process=regulation of sporulation|0043937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000011317.1;locus_tag=D5F88_RS07340;product=DNA-binding protein WhiA;protein_id=WP_000011319.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 88120 89535 . - . ID=gene-D5F88_RS07345;Name=D5F88_RS07345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07345;old_locus_tag=D5F88_07355 NZ_QYTI01000060.1 Protein Homology CDS 88120 89535 . - 0 ID=cds-WP_124773306.1;Parent=gene-D5F88_RS07345;Dbxref=GenBank:WP_124773306.1;Name=WP_124773306.1;Ontology_term=GO:0015074,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011017563.1;locus_tag=D5F88_RS07345;product=recombinase family protein;protein_id=WP_124773306.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 89654 90037 . - . ID=gene-D5F88_RS07350;Name=D5F88_RS07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07350;old_locus_tag=D5F88_07360 NZ_QYTI01000060.1 GeneMarkS-2+ CDS 89654 90037 . - 0 ID=cds-WP_257645471.1;Parent=gene-D5F88_RS07350;Dbxref=GenBank:WP_257645471.1;Name=WP_257645471.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS07350;product=hypothetical protein;protein_id=WP_257645471.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 90030 90479 . - . ID=gene-D5F88_RS07355;Name=D5F88_RS07355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07355;old_locus_tag=D5F88_07365 NZ_QYTI01000060.1 GeneMarkS-2+ CDS 90030 90479 . - 0 ID=cds-WP_124749019.1;Parent=gene-D5F88_RS07355;Dbxref=GenBank:WP_124749019.1;Name=WP_124749019.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS07355;product=hypothetical protein;protein_id=WP_124749019.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 90499 90783 . - . ID=gene-D5F88_RS07360;Name=D5F88_RS07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07360;old_locus_tag=D5F88_07370 NZ_QYTI01000060.1 GeneMarkS-2+ CDS 90499 90783 . - 0 ID=cds-WP_221620342.1;Parent=gene-D5F88_RS07360;Dbxref=GenBank:WP_221620342.1;Name=WP_221620342.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS07360;product=hypothetical protein;protein_id=WP_221620342.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 90998 91771 . - . ID=gene-D5F88_RS07365;Name=D5F88_RS07365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07365;old_locus_tag=D5F88_07375 NZ_QYTI01000060.1 Protein Homology CDS 90998 91771 . - 0 ID=cds-WP_124773308.1;Parent=gene-D5F88_RS07365;Dbxref=GenBank:WP_124773308.1;Name=WP_124773308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502654.1;locus_tag=D5F88_RS07365;product=S24 family peptidase;protein_id=WP_124773308.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 92284 92481 . - . ID=gene-D5F88_RS07375;Name=D5F88_RS07375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07375;old_locus_tag=D5F88_07385 NZ_QYTI01000060.1 Protein Homology CDS 92284 92481 . - 0 ID=cds-WP_086163277.1;Parent=gene-D5F88_RS07375;Dbxref=GenBank:WP_086163277.1;Name=WP_086163277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000703682.1;locus_tag=D5F88_RS07375;product=hypothetical protein;protein_id=WP_086163277.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 92540 92698 . + . ID=gene-D5F88_RS07380;Name=D5F88_RS07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07380;old_locus_tag=D5F88_07390 NZ_QYTI01000060.1 Protein Homology CDS 92540 92698 . + 0 ID=cds-WP_001104156.1;Parent=gene-D5F88_RS07380;Dbxref=GenBank:WP_001104156.1;Name=WP_001104156.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650606.1;locus_tag=D5F88_RS07380;product=hypothetical protein;protein_id=WP_001104156.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 92845 93540 . - . ID=gene-D5F88_RS07385;Name=D5F88_RS07385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07385;old_locus_tag=D5F88_07395 NZ_QYTI01000060.1 Protein Homology CDS 92845 93540 . - 0 ID=cds-WP_124773310.1;Parent=gene-D5F88_RS07385;Dbxref=GenBank:WP_124773310.1;Name=WP_124773310.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000039331.1;locus_tag=D5F88_RS07385;product=hypothetical protein;protein_id=WP_124773310.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 93634 93858 . + . ID=gene-D5F88_RS07390;Name=D5F88_RS07390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07390;old_locus_tag=D5F88_07400 NZ_QYTI01000060.1 Protein Homology CDS 93634 93858 . + 0 ID=cds-WP_124749022.1;Parent=gene-D5F88_RS07390;Dbxref=GenBank:WP_124749022.1;Name=WP_124749022.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001198776.1;locus_tag=D5F88_RS07390;product=helix-turn-helix transcriptional regulator;protein_id=WP_124749022.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 93869 94630 . + . ID=gene-D5F88_RS07395;Name=D5F88_RS07395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07395;old_locus_tag=D5F88_07405 NZ_QYTI01000060.1 Protein Homology CDS 93869 94630 . + 0 ID=cds-WP_124773312.1;Parent=gene-D5F88_RS07395;Dbxref=GenBank:WP_124773312.1;Name=WP_124773312.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001002948.1;locus_tag=D5F88_RS07395;product=phage antirepressor KilAC domain-containing protein;protein_id=WP_124773312.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 94660 94803 . + . ID=gene-D5F88_RS07400;Name=D5F88_RS07400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07400;old_locus_tag=D5F88_07410 NZ_QYTI01000060.1 Protein Homology CDS 94660 94803 . + 0 ID=cds-WP_124759396.1;Parent=gene-D5F88_RS07400;Dbxref=GenBank:WP_124759396.1;Name=WP_124759396.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000392846.1;locus_tag=D5F88_RS07400;product=hypothetical protein;protein_id=WP_124759396.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 94800 94979 . - . ID=gene-D5F88_RS07405;Name=D5F88_RS07405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07405;old_locus_tag=D5F88_07415 NZ_QYTI01000060.1 Protein Homology CDS 94800 94979 . - 0 ID=cds-WP_124759414.1;Parent=gene-D5F88_RS07405;Dbxref=GenBank:WP_124759414.1;Name=WP_124759414.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021471.6;locus_tag=D5F88_RS07405;product=DUF2188 domain-containing protein;protein_id=WP_124759414.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 95154 95300 . + . ID=gene-D5F88_RS11725;Name=D5F88_RS11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11725 NZ_QYTI01000060.1 Protein Homology CDS 95154 95300 . + 0 ID=cds-WP_001040242.1;Parent=gene-D5F88_RS11725;Dbxref=GenBank:WP_001040242.1;Name=WP_001040242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001040242.1;locus_tag=D5F88_RS11725;product=BOW99_gp33 family protein;protein_id=WP_001040242.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 95343 95663 . + . ID=gene-D5F88_RS07410;Name=D5F88_RS07410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07410;old_locus_tag=D5F88_07420 NZ_QYTI01000060.1 Protein Homology CDS 95343 95663 . + 0 ID=cds-WP_001059180.1;Parent=gene-D5F88_RS07410;Dbxref=GenBank:WP_001059180.1;Name=WP_001059180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001059179.1;locus_tag=D5F88_RS07410;product=hypothetical protein;protein_id=WP_001059180.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 95898 96158 . + . ID=gene-D5F88_RS07415;Name=D5F88_RS07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07415;old_locus_tag=D5F88_07425 NZ_QYTI01000060.1 Protein Homology CDS 95898 96158 . + 0 ID=cds-WP_124759397.1;Parent=gene-D5F88_RS07415;Dbxref=GenBank:WP_124759397.1;Name=WP_124759397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647568.1;locus_tag=D5F88_RS07415;product=hypothetical protein;protein_id=WP_124759397.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 96169 96300 . + . ID=gene-D5F88_RS11825;Name=D5F88_RS11825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11825 NZ_QYTI01000060.1 Protein Homology CDS 96169 96300 . + 0 ID=cds-WP_257638812.1;Parent=gene-D5F88_RS11825;Dbxref=GenBank:WP_257638812.1;Name=WP_257638812.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648781.1;locus_tag=D5F88_RS11825;product=hypothetical protein;protein_id=WP_257638812.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 96304 96483 . + . ID=gene-D5F88_RS07420;Name=D5F88_RS07420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07420;old_locus_tag=D5F88_07430 NZ_QYTI01000060.1 Protein Homology CDS 96304 96483 . + 0 ID=cds-WP_001078550.1;Parent=gene-D5F88_RS07420;Dbxref=GenBank:WP_001078550.1;Name=WP_001078550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001078548.1;locus_tag=D5F88_RS07420;product=hypothetical protein;protein_id=WP_001078550.1;transl_table=11 NZ_QYTI01000060.1 RefSeq gene 96480 97475 . + . ID=gene-D5F88_RS07425;Name=D5F88_RS07425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07425;old_locus_tag=D5F88_07435 NZ_QYTI01000060.1 Protein Homology CDS 96480 97475 . + 0 ID=cds-WP_124759398.1;Parent=gene-D5F88_RS07425;Dbxref=GenBank:WP_124759398.1;Name=WP_124759398.1;Ontology_term=GO:0006310,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768472.1;locus_tag=D5F88_RS07425;product=recombinase RecT;protein_id=WP_124759398.1;transl_table=11 NZ_QYTI01000060.1 RefSeq pseudogene 97472 97770 . + . ID=gene-D5F88_RS07430;Name=D5F88_RS07430;end_range=97770,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS07430;old_locus_tag=D5F88_07440;partial=true;pseudo=true NZ_QYTI01000060.1 Protein Homology CDS 97472 97770 . + 0 ID=cds-D5F88_RS07430;Parent=gene-D5F88_RS07430;Note=frameshifted%3B incomplete%3B missing C-terminus;end_range=97770,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011054699.1;locus_tag=D5F88_RS07430;partial=true;product=PD-(D/E)XK nuclease-like domain-containing protein;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000061.1 1 1387 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000061.1 RefSeq region 1 1387 . + . ID=NZ_QYTI01000061.1:1..1387;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000061.1 RefSeq pseudogene 152 1387 . - . ID=gene-D5F88_RS07435;Name=D5F88_RS07435;end_range=1387,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS07435;old_locus_tag=D5F88_07445;partial=true;pseudo=true NZ_QYTI01000061.1 Protein Homology CDS 152 1387 . - 0 ID=cds-D5F88_RS07435;Parent=gene-D5F88_RS07435;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=1387,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000526774.1;locus_tag=D5F88_RS07435;partial=true;product=phage tail tape measure protein;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000062.1 1 1129 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000062.1 RefSeq region 1 1129 . + . ID=NZ_QYTI01000062.1:1..1129;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000062.1 RefSeq gene 1 1129 . - . ID=gene-D5F88_RS07440;Name=mutL;end_range=1129,.;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=D5F88_RS07440;old_locus_tag=D5F88_07450;partial=true;start_range=.,1 NZ_QYTI01000062.1 Protein Homology CDS 1 1129 . - 1 ID=cds-WP_221620343.1;Parent=gene-D5F88_RS07440;Dbxref=GenBank:WP_221620343.1;Name=WP_221620343.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983;end_range=1129,.;gbkey=CDS;gene=mutL;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: protein motif:HMM:TIGR00585.2;locus_tag=D5F88_RS07440;partial=true;product=DNA mismatch repair endonuclease MutL;protein_id=WP_221620343.1;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000063.1 1 67189 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000063.1 RefSeq region 1 67189 . + . ID=NZ_QYTI01000063.1:1..67189;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000063.1 RefSeq gene 1 1211 . + . ID=gene-D5F88_RS07445;Name=D5F88_RS07445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07445;old_locus_tag=D5F88_07455;partial=true;start_range=.,1 NZ_QYTI01000063.1 Protein Homology CDS 1 1211 . + 2 ID=cds-WP_124773315.1;Parent=gene-D5F88_RS07445;Dbxref=GenBank:WP_124773315.1;Name=WP_124773315.1;Ontology_term=GO:0019277,GO:0008760;gbkey=CDS;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=UDP-N-acetylgalactosamine biosynthetic process|0019277||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001226236.1;locus_tag=D5F88_RS07445;partial=true;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_124773315.1;start_range=.,1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 1313 1867 . + . ID=gene-D5F88_RS07450;Name=D5F88_RS07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07450;old_locus_tag=D5F88_07460 NZ_QYTI01000063.1 Protein Homology CDS 1313 1867 . + 0 ID=cds-WP_000355951.1;Parent=gene-D5F88_RS07450;Dbxref=GenBank:WP_000355951.1;Name=WP_000355951.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000355949.1;locus_tag=D5F88_RS07450;product=GNAT family N-acetyltransferase;protein_id=WP_000355951.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 1860 3143 . + . ID=gene-D5F88_RS07455;Name=spxR;gbkey=Gene;gene=spxR;gene_biotype=protein_coding;locus_tag=D5F88_RS07455;old_locus_tag=D5F88_07465 NZ_QYTI01000063.1 Protein Homology CDS 1860 3143 . + 0 ID=cds-WP_000033796.1;Parent=gene-D5F88_RS07455;Dbxref=GenBank:WP_000033796.1;Name=WP_000033796.1;gbkey=CDS;gene=spxR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000033790.1;locus_tag=D5F88_RS07455;product=CBS-HotDog domain-containing transcription factor SpxR;protein_id=WP_000033796.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 3166 4026 . + . ID=gene-D5F88_RS07460;Name=D5F88_RS07460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07460;old_locus_tag=D5F88_07470 NZ_QYTI01000063.1 Protein Homology CDS 3166 4026 . + 0 ID=cds-WP_016502817.1;Parent=gene-D5F88_RS07460;Dbxref=GenBank:WP_016502817.1;Name=WP_016502817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013903404.1;locus_tag=D5F88_RS07460;product=methionyl aminopeptidase;protein_id=WP_016502817.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 4028 4948 . + . ID=gene-D5F88_RS07465;Name=D5F88_RS07465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07465;old_locus_tag=D5F88_07475 NZ_QYTI01000063.1 Protein Homology CDS 4028 4948 . + 0 ID=cds-WP_000768440.1;Parent=gene-D5F88_RS07465;Dbxref=GenBank:WP_000768440.1;Name=WP_000768440.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767751.1;locus_tag=D5F88_RS07465;product=YihY/virulence factor BrkB family protein;protein_id=WP_000768440.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 4965 5420 . - . ID=gene-D5F88_RS07470;Name=D5F88_RS07470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07470;old_locus_tag=D5F88_07480 NZ_QYTI01000063.1 Protein Homology CDS 4965 5420 . - 0 ID=cds-WP_016502818.1;Parent=gene-D5F88_RS07470;Dbxref=GenBank:WP_016502818.1;Name=WP_016502818.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000239844.1;locus_tag=D5F88_RS07470;product=GtrA family protein;protein_id=WP_016502818.1;transl_table=11 NZ_QYTI01000063.1 cmsearch riboswitch 5491 5604 . + . ID=id-NZ_QYTI01000063.1:5491..5604;Dbxref=RFAM:RF01054;Note=PreQ1 riboswitch class II;bound_moiety=preQ1;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_QYTI01000063.1 RefSeq gene 5602 6111 . + . ID=gene-D5F88_RS07475;Name=D5F88_RS07475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07475;old_locus_tag=D5F88_07485 NZ_QYTI01000063.1 Protein Homology CDS 5602 6111 . + 0 ID=cds-WP_001091613.1;Parent=gene-D5F88_RS07475;Dbxref=GenBank:WP_001091613.1;Name=WP_001091613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631935.1;locus_tag=D5F88_RS07475;product=QueT transporter family protein;protein_id=WP_001091613.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 6251 8209 . + . ID=gene-D5F88_RS07480;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=D5F88_RS07480;old_locus_tag=D5F88_07490 NZ_QYTI01000063.1 Protein Homology CDS 6251 8209 . + 0 ID=cds-WP_001883531.1;Parent=gene-D5F88_RS07480;Dbxref=GenBank:WP_001883531.1;Name=WP_001883531.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001873525.1;locus_tag=D5F88_RS07480;product=NAD-dependent DNA ligase LigA;protein_id=WP_001883531.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 8221 9240 . + . ID=gene-D5F88_RS07485;Name=D5F88_RS07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07485;old_locus_tag=D5F88_07495 NZ_QYTI01000063.1 Protein Homology CDS 8221 9240 . + 0 ID=cds-WP_000744288.1;Parent=gene-D5F88_RS07485;Dbxref=GenBank:WP_000744288.1;Name=WP_000744288.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000744285.1;locus_tag=D5F88_RS07485;product=diacylglycerol kinase family lipid kinase;protein_id=WP_000744288.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 9244 11544 . + . ID=gene-D5F88_RS07490;Name=pulA;gbkey=Gene;gene=pulA;gene_biotype=protein_coding;locus_tag=D5F88_RS07490;old_locus_tag=D5F88_07500 NZ_QYTI01000063.1 Protein Homology CDS 9244 11544 . + 0 ID=cds-WP_000370747.1;Parent=gene-D5F88_RS07490;Dbxref=GenBank:WP_000370747.1;Name=WP_000370747.1;Ontology_term=GO:0051060;gbkey=CDS;gene=pulA;go_function=pullulanase activity|0051060||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000370733.1;locus_tag=D5F88_RS07490;product=type I pullulanase;protein_id=WP_000370747.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 11750 13618 . + . ID=gene-D5F88_RS07495;Name=glgB;gbkey=Gene;gene=glgB;gene_biotype=protein_coding;locus_tag=D5F88_RS07495;old_locus_tag=D5F88_07505 NZ_QYTI01000063.1 Protein Homology CDS 11750 13618 . + 0 ID=cds-WP_016502819.1;Parent=gene-D5F88_RS07495;Dbxref=GenBank:WP_016502819.1;Name=WP_016502819.1;Ontology_term=GO:0005975,GO:0005978,GO:0003844,GO:0004553,GO:0043169;gbkey=CDS;gene=glgB;go_function=1%2C4-alpha-glucan branching enzyme activity|0003844||IEA,hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,cation binding|0043169||IEA;go_process=carbohydrate metabolic process|0005975||IEA,glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631939.1;locus_tag=D5F88_RS07495;product=1%2C4-alpha-glucan branching protein GlgB;protein_id=WP_016502819.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 13660 14799 . + . ID=gene-D5F88_RS07500;Name=D5F88_RS07500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07500;old_locus_tag=D5F88_07510 NZ_QYTI01000063.1 Protein Homology CDS 13660 14799 . + 0 ID=cds-WP_000787289.1;Parent=gene-D5F88_RS07500;Dbxref=GenBank:WP_000787289.1;Name=WP_000787289.1;Ontology_term=GO:0005978,GO:0008878;gbkey=CDS;go_function=glucose-1-phosphate adenylyltransferase activity|0008878||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019785022.1;locus_tag=D5F88_RS07500;product=glucose-1-phosphate adenylyltransferase;protein_id=WP_000787289.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 14789 15922 . + . ID=gene-D5F88_RS07505;Name=glgD;gbkey=Gene;gene=glgD;gene_biotype=protein_coding;locus_tag=D5F88_RS07505;old_locus_tag=D5F88_07515 NZ_QYTI01000063.1 Protein Homology CDS 14789 15922 . + 0 ID=cds-WP_016502820.1;Parent=gene-D5F88_RS07505;Dbxref=GenBank:WP_016502820.1;Name=WP_016502820.1;Ontology_term=GO:0005978,GO:0008878;gbkey=CDS;gene=glgD;go_function=glucose-1-phosphate adenylyltransferase activity|0008878||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000687083.1;locus_tag=D5F88_RS07505;product=glucose-1-phosphate adenylyltransferase subunit GlgD;protein_id=WP_016502820.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 15919 17349 . + . ID=gene-D5F88_RS07510;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=D5F88_RS07510;old_locus_tag=D5F88_07520 NZ_QYTI01000063.1 Protein Homology CDS 15919 17349 . + 0 ID=cds-WP_000699868.1;Parent=gene-D5F88_RS07510;Dbxref=GenBank:WP_000699868.1;Name=WP_000699868.1;Ontology_term=GO:0004373;gbkey=CDS;gene=glgA;go_function=alpha-1%2C4-glucan glucosyltransferase (UDP-glucose donor) activity|0004373||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480692.1;locus_tag=D5F88_RS07510;product=glycogen synthase GlgA;protein_id=WP_000699868.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 17681 17881 . + . ID=gene-D5F88_RS07515;Name=D5F88_RS07515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07515;old_locus_tag=D5F88_07525 NZ_QYTI01000063.1 Protein Homology CDS 17681 17881 . + 0 ID=cds-WP_001046538.1;Parent=gene-D5F88_RS07515;Dbxref=GenBank:WP_001046538.1;Name=WP_001046538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001046538.1;locus_tag=D5F88_RS07515;product=F0F1 ATP synthase subunit C;protein_id=WP_001046538.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 17913 18629 . + . ID=gene-D5F88_RS07520;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=D5F88_RS07520;old_locus_tag=D5F88_07530 NZ_QYTI01000063.1 Protein Homology CDS 17913 18629 . + 0 ID=cds-WP_000446421.1;Parent=gene-D5F88_RS07520;Dbxref=GenBank:WP_000446421.1;Name=WP_000446421.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpB;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000446422.1;locus_tag=D5F88_RS07520;product=F0F1 ATP synthase subunit A;protein_id=WP_000446421.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 18647 19144 . + . ID=gene-D5F88_RS07525;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;locus_tag=D5F88_RS07525;old_locus_tag=D5F88_07535 NZ_QYTI01000063.1 Protein Homology CDS 18647 19144 . + 0 ID=cds-WP_000025478.1;Parent=gene-D5F88_RS07525;Dbxref=GenBank:WP_000025478.1;Name=WP_000025478.1;Ontology_term=GO:0015986,GO:0015078,GO:0045259;gbkey=CDS;gene=atpF;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000025481.1;locus_tag=D5F88_RS07525;product=F0F1 ATP synthase subunit B;protein_id=WP_000025478.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 19144 19680 . + . ID=gene-D5F88_RS07530;Name=D5F88_RS07530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07530;old_locus_tag=D5F88_07540 NZ_QYTI01000063.1 Protein Homology CDS 19144 19680 . + 0 ID=cds-WP_001036757.1;Parent=gene-D5F88_RS07530;Dbxref=GenBank:WP_001036757.1;Name=WP_001036757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001036758.1;locus_tag=D5F88_RS07530;product=F0F1 ATP synthase subunit delta;protein_id=WP_001036757.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 19696 21201 . + . ID=gene-D5F88_RS07535;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=D5F88_RS07535;old_locus_tag=D5F88_07545 NZ_QYTI01000063.1 Protein Homology CDS 19696 21201 . + 0 ID=cds-WP_000996613.1;Parent=gene-D5F88_RS07535;Dbxref=GenBank:WP_000996613.1;Name=WP_000996613.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpA;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011889023.1;locus_tag=D5F88_RS07535;product=F0F1 ATP synthase subunit alpha;protein_id=WP_000996613.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 21217 22098 . + . ID=gene-D5F88_RS07540;Name=D5F88_RS07540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07540;old_locus_tag=D5F88_07550 NZ_QYTI01000063.1 Protein Homology CDS 21217 22098 . + 0 ID=cds-WP_000919083.1;Parent=gene-D5F88_RS07540;Dbxref=GenBank:WP_000919083.1;Name=WP_000919083.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000919083.1;locus_tag=D5F88_RS07540;product=F0F1 ATP synthase subunit gamma;protein_id=WP_000919083.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 22172 23578 . + . ID=gene-D5F88_RS07545;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=D5F88_RS07545;old_locus_tag=D5F88_07555 NZ_QYTI01000063.1 Protein Homology CDS 22172 23578 . + 0 ID=cds-WP_000094375.1;Parent=gene-D5F88_RS07545;Dbxref=GenBank:WP_000094375.1;Name=WP_000094375.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpD;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643977.1;locus_tag=D5F88_RS07545;product=F0F1 ATP synthase subunit beta;protein_id=WP_000094375.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 23591 24004 . + . ID=gene-D5F88_RS07550;Name=D5F88_RS07550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07550;old_locus_tag=D5F88_07560 NZ_QYTI01000063.1 Protein Homology CDS 23591 24004 . + 0 ID=cds-WP_000068053.1;Parent=gene-D5F88_RS07550;Dbxref=GenBank:WP_000068053.1;Name=WP_000068053.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000068055.1;locus_tag=D5F88_RS07550;product=F0F1 ATP synthase subunit epsilon;protein_id=WP_000068053.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 24069 24299 . + . ID=gene-D5F88_RS07555;Name=D5F88_RS07555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07555;old_locus_tag=D5F88_07565 NZ_QYTI01000063.1 Protein Homology CDS 24069 24299 . + 0 ID=cds-WP_000602601.1;Parent=gene-D5F88_RS07555;Dbxref=GenBank:WP_000602601.1;Name=WP_000602601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000602601.1;locus_tag=D5F88_RS07555;product=DUF1146 family protein;protein_id=WP_000602601.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 24362 25633 . + . ID=gene-D5F88_RS07560;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=D5F88_RS07560;old_locus_tag=D5F88_07570 NZ_QYTI01000063.1 Protein Homology CDS 24362 25633 . + 0 ID=cds-WP_000357877.1;Parent=gene-D5F88_RS07560;Dbxref=GenBank:WP_000357877.1;Name=WP_000357877.1;Ontology_term=GO:0019277,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=UDP-N-acetylgalactosamine biosynthetic process|0019277||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000357880.1;locus_tag=D5F88_RS07560;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_000357877.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 25635 25826 . + . ID=gene-D5F88_RS07565;Name=D5F88_RS07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07565;old_locus_tag=D5F88_07575 NZ_QYTI01000063.1 Protein Homology CDS 25635 25826 . + 0 ID=cds-WP_000168511.1;Parent=gene-D5F88_RS07565;Dbxref=GenBank:WP_000168511.1;Name=WP_000168511.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000168511.1;locus_tag=D5F88_RS07565;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_000168511.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 25901 26758 . + . ID=gene-D5F88_RS07570;Name=D5F88_RS07570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07570;old_locus_tag=D5F88_07580 NZ_QYTI01000063.1 Protein Homology CDS 25901 26758 . + 0 ID=cds-WP_016480695.1;Parent=gene-D5F88_RS07570;Dbxref=GenBank:WP_016480695.1;Name=WP_016480695.1;Ontology_term=GO:0003676,GO:0004519,GO:0046872;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000162649.1;locus_tag=D5F88_RS07570;product=DNA/RNA non-specific endonuclease;protein_id=WP_016480695.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 27049 28089 . + . ID=gene-D5F88_RS07575;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=D5F88_RS07575;old_locus_tag=D5F88_07585 NZ_QYTI01000063.1 Protein Homology CDS 27049 28089 . + 0 ID=cds-WP_000365655.1;Parent=gene-D5F88_RS07575;Dbxref=GenBank:WP_000365655.1;Name=WP_000365655.1;Ontology_term=GO:0006432,GO:0000166,GO:0004826,GO:0005524,GO:0005737;gbkey=CDS;gene=pheS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000365656.1;locus_tag=D5F88_RS07575;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_000365655.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 28172 28693 . + . ID=gene-D5F88_RS07580;Name=D5F88_RS07580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07580;old_locus_tag=D5F88_07590 NZ_QYTI01000063.1 Protein Homology CDS 28172 28693 . + 0 ID=cds-WP_000078401.1;Parent=gene-D5F88_RS07580;Dbxref=GenBank:WP_000078401.1;Name=WP_000078401.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000078399.1;locus_tag=D5F88_RS07580;product=GNAT family N-acetyltransferase;protein_id=WP_000078401.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 28746 31151 . + . ID=gene-D5F88_RS07585;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=D5F88_RS07585;old_locus_tag=D5F88_07595 NZ_QYTI01000063.1 Protein Homology CDS 28746 31151 . + 0 ID=cds-WP_016480696.1;Parent=gene-D5F88_RS07585;Dbxref=GenBank:WP_016480696.1;Name=WP_016480696.1;Ontology_term=GO:0006432,GO:0000287,GO:0004826,GO:0005524;gbkey=CDS;gene=pheT;go_function=magnesium ion binding|0000287||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000961574.1;locus_tag=D5F88_RS07585;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_016480696.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 31223 32125 . - . ID=gene-D5F88_RS07590;Name=ypfJ;gbkey=Gene;gene=ypfJ;gene_biotype=protein_coding;locus_tag=D5F88_RS07590;old_locus_tag=D5F88_07600 NZ_QYTI01000063.1 Protein Homology CDS 31223 32125 . - 0 ID=cds-WP_016502822.1;Parent=gene-D5F88_RS07590;Dbxref=GenBank:WP_016502822.1;Name=WP_016502822.1;gbkey=CDS;gene=ypfJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650877.1;locus_tag=D5F88_RS07590;product=KPN_02809 family neutral zinc metallopeptidase;protein_id=WP_016502822.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 32303 35536 . + . ID=gene-D5F88_RS07595;Name=rexB;gbkey=Gene;gene=rexB;gene_biotype=protein_coding;locus_tag=D5F88_RS07595;old_locus_tag=D5F88_07605 NZ_QYTI01000063.1 Protein Homology CDS 32303 35536 . + 0 ID=cds-WP_086163313.1;Parent=gene-D5F88_RS07595;Dbxref=GenBank:WP_086163313.1;Name=WP_086163313.1;Ontology_term=GO:0000724,GO:0004518;gbkey=CDS;gene=rexB;go_function=nuclease activity|0004518||IEA;go_process=double-strand break repair via homologous recombination|0000724||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767794.1;locus_tag=D5F88_RS07595;product=ATP-dependent nuclease subunit B;protein_id=WP_086163313.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 35526 39149 . + . ID=gene-D5F88_RS07600;Name=addA;gbkey=Gene;gene=addA;gene_biotype=protein_coding;locus_tag=D5F88_RS07600;old_locus_tag=D5F88_07610 NZ_QYTI01000063.1 Protein Homology CDS 35526 39149 . + 0 ID=cds-WP_124773319.1;Parent=gene-D5F88_RS07600;Dbxref=GenBank:WP_124773319.1;Name=WP_124773319.1;Ontology_term=GO:0000724,GO:0006302,GO:0003678,GO:0016818;gbkey=CDS;gene=addA;go_function=DNA helicase activity|0003678||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=double-strand break repair via homologous recombination|0000724||IEA,double-strand break repair|0006302||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000143231.1;locus_tag=D5F88_RS07600;product=helicase-exonuclease AddAB subunit AddA;protein_id=WP_124773319.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 39162 40079 . + . ID=gene-D5F88_RS07605;Name=D5F88_RS07605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07605;old_locus_tag=D5F88_07615 NZ_QYTI01000063.1 Protein Homology CDS 39162 40079 . + 0 ID=cds-WP_000634649.1;Parent=gene-D5F88_RS07605;Dbxref=GenBank:WP_000634649.1;Name=WP_000634649.1;Ontology_term=GO:0030001,GO:0055085,GO:0046873,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metal ion transmembrane transporter activity|0046873||IEA;go_process=metal ion transport|0030001||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000634642.1;locus_tag=D5F88_RS07605;product=magnesium transporter CorA family protein;protein_id=WP_000634649.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 40111 41487 . - . ID=gene-D5F88_RS07610;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=D5F88_RS07610;old_locus_tag=D5F88_07620 NZ_QYTI01000063.1 Protein Homology CDS 40111 41487 . - 0 ID=cds-WP_000028886.1;Parent=gene-D5F88_RS07610;Dbxref=GenBank:WP_000028886.1;Name=WP_000028886.1;Ontology_term=GO:0006400,GO:0003924,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000028905.1;locus_tag=D5F88_RS07610;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=WP_000028886.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 41615 43525 . + . ID=gene-D5F88_RS07615;Name=D5F88_RS07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07615;old_locus_tag=D5F88_07625 NZ_QYTI01000063.1 Protein Homology CDS 41615 43525 . + 0 ID=cds-WP_017647152.1;Parent=gene-D5F88_RS07615;Dbxref=GenBank:WP_017647152.1;Name=WP_017647152.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647152.1;locus_tag=D5F88_RS07615;product=ABC-F family ATP-binding cassette domain-containing protein;protein_id=WP_017647152.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 43675 44643 . + . ID=gene-D5F88_RS07620;Name=D5F88_RS07620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07620;old_locus_tag=D5F88_07630 NZ_QYTI01000063.1 Protein Homology CDS 43675 44643 . + 0 ID=cds-WP_000258166.1;Parent=gene-D5F88_RS07620;Dbxref=GenBank:WP_000258166.1;Name=WP_000258166.1;Ontology_term=GO:0016624,GO:0030976;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor|0016624||IEA,thiamine pyrophosphate binding|0030976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000258167.1;locus_tag=D5F88_RS07620;product=thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha;protein_id=WP_000258166.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 44718 45716 . + . ID=gene-D5F88_RS07625;Name=D5F88_RS07625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07625;old_locus_tag=D5F88_07635 NZ_QYTI01000063.1 Protein Homology CDS 44718 45716 . + 0 ID=cds-WP_086163314.1;Parent=gene-D5F88_RS07625;Dbxref=GenBank:WP_086163314.1;Name=WP_086163314.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000005088.1;locus_tag=D5F88_RS07625;product=alpha-ketoacid dehydrogenase subunit beta;protein_id=WP_086163314.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 45843 47231 . + . ID=gene-D5F88_RS07630;Name=D5F88_RS07630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07630;old_locus_tag=D5F88_07640 NZ_QYTI01000063.1 Protein Homology CDS 45843 47231 . + 0 ID=cds-WP_086163315.1;Parent=gene-D5F88_RS07630;Dbxref=GenBank:WP_086163315.1;Name=WP_086163315.1;Ontology_term=GO:0006086,GO:0016746,GO:0045254;gbkey=CDS;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=acyltransferase activity|0016746||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000257567.1;locus_tag=D5F88_RS07630;product=dihydrolipoamide acetyltransferase;protein_id=WP_086163315.1;transl_table=11 NZ_QYTI01000063.1 RefSeq pseudogene 47291 47560 . + . ID=gene-D5F88_RS11920;Name=D5F88_RS11920;end_range=47560,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11920;partial=true;pseudo=true NZ_QYTI01000063.1 Protein Homology CDS 47291 47560 . + 0 ID=cds-D5F88_RS11920;Parent=gene-D5F88_RS11920;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=47560,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002984864.1;locus_tag=D5F88_RS11920;partial=true;product=biotin/lipoyl-containing protein;pseudo=true;transl_table=11 NZ_QYTI01000063.1 RefSeq pseudogene 47630 49048 . + . ID=gene-D5F88_RS07635;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=pseudogene;locus_tag=D5F88_RS07635;old_locus_tag=D5F88_07645;partial=true;pseudo=true;start_range=.,47630 NZ_QYTI01000063.1 Protein Homology CDS 47630 49048 . + 0 ID=cds-D5F88_RS07635;Parent=gene-D5F88_RS07635;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004148,GO:0050660;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase (NADH) activity|0004148||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002984864.1;locus_tag=D5F88_RS07635;partial=true;product=dihydrolipoyl dehydrogenase;pseudo=true;start_range=.,47630;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 49146 50135 . + . ID=gene-D5F88_RS07640;Name=D5F88_RS07640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07640;old_locus_tag=D5F88_07650 NZ_QYTI01000063.1 Protein Homology CDS 49146 50135 . + 0 ID=cds-WP_016502827.1;Parent=gene-D5F88_RS07640;Dbxref=GenBank:WP_016502827.1;Name=WP_016502827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000875297.1;locus_tag=D5F88_RS07640;product=lipoate--protein ligase;protein_id=WP_016502827.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 50243 51028 . - . ID=gene-D5F88_RS07645;Name=gatD;gbkey=Gene;gene=gatD;gene_biotype=protein_coding;locus_tag=D5F88_RS07645;old_locus_tag=D5F88_07655 NZ_QYTI01000063.1 Protein Homology CDS 50243 51028 . - 0 ID=cds-WP_016502828.1;Parent=gene-D5F88_RS07645;Dbxref=GenBank:WP_016502828.1;Name=WP_016502828.1;Ontology_term=GO:0009252,GO:0004359,GO:0140282;gbkey=CDS;gene=gatD;go_function=glutaminase activity|0004359||IEA,carbon-nitrogen ligase activity on lipid II|0140282||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000222744.1;locus_tag=D5F88_RS07645;product=lipid II isoglutaminyl synthase subunit GatD;protein_id=WP_016502828.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 51028 52371 . - . ID=gene-D5F88_RS07650;Name=murT;gbkey=Gene;gene=murT;gene_biotype=protein_coding;locus_tag=D5F88_RS07650;old_locus_tag=D5F88_07660 NZ_QYTI01000063.1 Protein Homology CDS 51028 52371 . - 0 ID=cds-WP_016502829.1;Parent=gene-D5F88_RS07650;Dbxref=GenBank:WP_016502829.1;Name=WP_016502829.1;Ontology_term=GO:0009252,GO:0016881,GO:0140282;gbkey=CDS;gene=murT;go_function=acid-amino acid ligase activity|0016881||IEA,carbon-nitrogen ligase activity on lipid II|0140282||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000700881.1;locus_tag=D5F88_RS07650;product=lipid II isoglutaminyl synthase subunit MurT;protein_id=WP_016502829.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 52511 53362 . + . ID=gene-D5F88_RS07655;Name=cdaA;gbkey=Gene;gene=cdaA;gene_biotype=protein_coding;locus_tag=D5F88_RS07655;old_locus_tag=D5F88_07665 NZ_QYTI01000063.1 Protein Homology CDS 52511 53362 . + 0 ID=cds-WP_000350949.1;Parent=gene-D5F88_RS07655;Dbxref=GenBank:WP_000350949.1;Name=WP_000350949.1;Ontology_term=GO:0006171,GO:0004016;gbkey=CDS;gene=cdaA;go_function=adenylate cyclase activity|0004016||IEA;go_process=cAMP biosynthetic process|0006171||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646387.1;locus_tag=D5F88_RS07655;product=diadenylate cyclase CdaA;protein_id=WP_000350949.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 53365 54324 . + . ID=gene-D5F88_RS07660;Name=D5F88_RS07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07660;old_locus_tag=D5F88_07670 NZ_QYTI01000063.1 Protein Homology CDS 53365 54324 . + 0 ID=cds-WP_000713236.1;Parent=gene-D5F88_RS07660;Dbxref=GenBank:WP_000713236.1;Name=WP_000713236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017770882.1;locus_tag=D5F88_RS07660;product=CdaR family protein;protein_id=WP_000713236.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 54378 55730 . + . ID=gene-D5F88_RS07665;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=D5F88_RS07665;old_locus_tag=D5F88_07675 NZ_QYTI01000063.1 Protein Homology CDS 54378 55730 . + 0 ID=cds-WP_000521427.1;Parent=gene-D5F88_RS07665;Dbxref=GenBank:WP_000521427.1;Name=WP_000521427.1;Ontology_term=GO:0005975,GO:0009252,GO:0000287,GO:0008966;gbkey=CDS;gene=glmM;go_function=magnesium ion binding|0000287||IEA,phosphoglucosamine mutase activity|0008966||IEA;go_process=carbohydrate metabolic process|0005975||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006738537.1;locus_tag=D5F88_RS07665;product=phosphoglucosamine mutase;protein_id=WP_000521427.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 55853 56224 . + . ID=gene-D5F88_RS07670;Name=D5F88_RS07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07670;old_locus_tag=D5F88_07680 NZ_QYTI01000063.1 Protein Homology CDS 55853 56224 . + 0 ID=cds-WP_000159234.1;Parent=gene-D5F88_RS07670;Dbxref=GenBank:WP_000159234.1;Name=WP_000159234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000159232.1;locus_tag=D5F88_RS07670;product=YbgA family protein;protein_id=WP_000159234.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 56249 56629 . + . ID=gene-D5F88_RS07675;Name=D5F88_RS07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07675;old_locus_tag=D5F88_07685 NZ_QYTI01000063.1 Protein Homology CDS 56249 56629 . + 0 ID=cds-WP_001241816.1;Parent=gene-D5F88_RS07675;Dbxref=GenBank:WP_001241816.1;Name=WP_001241816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480707.1;locus_tag=D5F88_RS07675;product=TIGR02328 family protein;protein_id=WP_001241816.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 56723 57853 . + . ID=gene-D5F88_RS07680;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=D5F88_RS07680;old_locus_tag=D5F88_07690 NZ_QYTI01000063.1 Protein Homology CDS 56723 57853 . + 0 ID=cds-WP_086163318.1;Parent=gene-D5F88_RS07680;Dbxref=GenBank:WP_086163318.1;Name=WP_086163318.1;Ontology_term=GO:0006779,GO:0051539,GO:0051989,GO:0005737;gbkey=CDS;gene=hemW;go_component=cytoplasm|0005737||IEA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058522.1;locus_tag=D5F88_RS07680;product=radical SAM family heme chaperone HemW;protein_id=WP_086163318.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 57857 58594 . + . ID=gene-D5F88_RS07685;Name=D5F88_RS07685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07685;old_locus_tag=D5F88_07695 NZ_QYTI01000063.1 Protein Homology CDS 57857 58594 . + 0 ID=cds-WP_016502831.1;Parent=gene-D5F88_RS07685;Dbxref=GenBank:WP_016502831.1;Name=WP_016502831.1;Ontology_term=GO:0006633,GO:0016790;gbkey=CDS;go_function=thiolester hydrolase activity|0016790||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631960.1;locus_tag=D5F88_RS07685;product=acyl-ACP thioesterase domain-containing protein;protein_id=WP_016502831.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 58595 59365 . + . ID=gene-D5F88_RS07690;Name=D5F88_RS07690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07690;old_locus_tag=D5F88_07700 NZ_QYTI01000063.1 Protein Homology CDS 58595 59365 . + 0 ID=cds-WP_000323544.1;Parent=gene-D5F88_RS07690;Dbxref=GenBank:WP_000323544.1;Name=WP_000323544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000323542.1;locus_tag=D5F88_RS07690;product=TIGR01457 family HAD-type hydrolase;protein_id=WP_000323544.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 59355 60011 . + . ID=gene-D5F88_RS07695;Name=D5F88_RS07695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07695;old_locus_tag=D5F88_07705 NZ_QYTI01000063.1 Protein Homology CDS 59355 60011 . + 0 ID=cds-WP_086163319.1;Parent=gene-D5F88_RS07695;Dbxref=GenBank:WP_086163319.1;Name=WP_086163319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480709.1;locus_tag=D5F88_RS07695;product=TIGR01906 family membrane protein;protein_id=WP_086163319.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 60291 64403 . + . ID=gene-D5F88_RS07700;Name=cas9;gbkey=Gene;gene=cas9;gene_biotype=protein_coding;gene_synonym=csn1;locus_tag=D5F88_RS07700;old_locus_tag=D5F88_07710 NZ_QYTI01000063.1 Protein Homology CDS 60291 64403 . + 0 ID=cds-WP_016502833.1;Parent=gene-D5F88_RS07700;Dbxref=GenBank:WP_016502833.1;Name=WP_016502833.1;Note=Cas9%2C originally named Csn1%2C is the large%2C multifunctional signature protein of type II CRISPR/Cas systems. It is well known even to general audiences because its RNA-guided endonuclease activity has made it a popular tool for custom editing of eukaryotic genomes.;Ontology_term=GO:0043571,GO:0004520;gbkey=CDS;gene=cas9;go_function=DNA endonuclease activity|0004520||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: protein motif:HMM:TIGR01865.2;locus_tag=D5F88_RS07700;product=type II CRISPR RNA-guided endonuclease Cas9;protein_id=WP_016502833.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 64405 65274 . + . ID=gene-D5F88_RS07705;Name=cas1;gbkey=Gene;gene=cas1;gene_biotype=protein_coding;locus_tag=D5F88_RS07705;old_locus_tag=D5F88_07715 NZ_QYTI01000063.1 Protein Homology CDS 64405 65274 . + 0 ID=cds-WP_016502834.1;Parent=gene-D5F88_RS07705;Dbxref=GenBank:WP_016502834.1;Name=WP_016502834.1;Ontology_term=GO:0043571,GO:0051607,GO:0003676,GO:0004520,GO:0046872;gbkey=CDS;gene=cas1;go_function=nucleic acid binding|0003676||IEA,DNA endonuclease activity|0004520||IEA,metal ion binding|0046872||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502834.1;locus_tag=D5F88_RS07705;product=type II CRISPR-associated endonuclease Cas1;protein_id=WP_016502834.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 65271 65612 . + . ID=gene-D5F88_RS07710;Name=cas2;gbkey=Gene;gene=cas2;gene_biotype=protein_coding;locus_tag=D5F88_RS07710;old_locus_tag=D5F88_07720 NZ_QYTI01000063.1 Protein Homology CDS 65271 65612 . + 0 ID=cds-WP_016502835.1;Parent=gene-D5F88_RS07710;Dbxref=GenBank:WP_016502835.1;Name=WP_016502835.1;Ontology_term=GO:0043571,GO:0004521;gbkey=CDS;gene=cas2;go_function=RNA endonuclease activity|0004521||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502835.1;locus_tag=D5F88_RS07710;product=CRISPR-associated endonuclease Cas2;protein_id=WP_016502835.1;transl_table=11 NZ_QYTI01000063.1 RefSeq gene 65599 66264 . + . ID=gene-D5F88_RS07715;Name=csn2;gbkey=Gene;gene=csn2;gene_biotype=protein_coding;locus_tag=D5F88_RS07715;old_locus_tag=D5F88_07725 NZ_QYTI01000063.1 Protein Homology CDS 65599 66264 . + 0 ID=cds-WP_000590706.1;Parent=gene-D5F88_RS07715;Dbxref=GenBank:WP_000590706.1;Name=WP_000590706.1;Ontology_term=GO:0043571;gbkey=CDS;gene=csn2;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480712.1;locus_tag=D5F88_RS07715;product=type II-A CRISPR-associated protein Csn2;protein_id=WP_000590706.1;transl_table=11 NZ_QYTI01000063.1 RefSeq direct_repeat 66365 67126 . + . ID=id-NZ_QYTI01000063.1:66365..67126;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=66365..66400;rpt_unit_seq=gttttagagctgtgctgtttcgaatggttccaaaac ##sequence-region NZ_QYTI01000064.1 1 22772 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000064.1 RefSeq region 1 22772 . + . ID=NZ_QYTI01000064.1:1..22772;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000064.1 RefSeq gene 1 1459 . - . ID=gene-D5F88_RS07720;Name=D5F88_RS07720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07720;old_locus_tag=D5F88_07730;partial=true;start_range=.,1 NZ_QYTI01000064.1 Protein Homology CDS 1 1459 . - 0 ID=cds-WP_124773321.1;Parent=gene-D5F88_RS07720;Dbxref=GenBank:WP_124773321.1;Name=WP_124773321.1;Ontology_term=GO:0005975,GO:0004556;gbkey=CDS;go_function=alpha-amylase activity|0004556||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000180581.1;locus_tag=D5F88_RS07720;partial=true;product=alpha-amylase;protein_id=WP_124773321.1;start_range=.,1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 1591 2595 . - . ID=gene-D5F88_RS07725;Name=ccpA;gbkey=Gene;gene=ccpA;gene_biotype=protein_coding;locus_tag=D5F88_RS07725;old_locus_tag=D5F88_07735 NZ_QYTI01000064.1 Protein Homology CDS 1591 2595 . - 0 ID=cds-WP_086163290.1;Parent=gene-D5F88_RS07725;Dbxref=GenBank:WP_086163290.1;Name=WP_086163290.1;Ontology_term=GO:0005975,GO:0006355,GO:0001228,GO:0003677;gbkey=CDS;gene=ccpA;go_function=DNA-binding transcription activator activity%2C RNA polymerase II-specific|0001228||IEA,DNA binding|0003677||IEA;go_process=carbohydrate metabolic process|0005975||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058462.1;locus_tag=D5F88_RS07725;product=catabolite control protein A;protein_id=WP_086163290.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 2805 3890 . + . ID=gene-D5F88_RS07730;Name=D5F88_RS07730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07730;old_locus_tag=D5F88_07740 NZ_QYTI01000064.1 Protein Homology CDS 2805 3890 . + 0 ID=cds-WP_000040809.1;Parent=gene-D5F88_RS07730;Dbxref=GenBank:WP_000040809.1;Name=WP_000040809.1;Ontology_term=GO:0006508,GO:0004177,GO:0008233,GO:0016787,GO:0046872,GO:0070006;gbkey=CDS;go_function=aminopeptidase activity|0004177||IEA,peptidase activity|0008233||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000040814.1;locus_tag=D5F88_RS07730;product=M24 family metallopeptidase;protein_id=WP_000040809.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 3948 5738 . - . ID=gene-D5F88_RS07735;Name=D5F88_RS07735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07735;old_locus_tag=D5F88_07745 NZ_QYTI01000064.1 Protein Homology CDS 3948 5738 . - 0 ID=cds-WP_016502757.1;Parent=gene-D5F88_RS07735;Dbxref=GenBank:WP_016502757.1;Name=WP_016502757.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000149450.1;locus_tag=D5F88_RS07735;product=glycoside hydrolase family 3 protein;protein_id=WP_016502757.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 5754 6566 . - . ID=gene-D5F88_RS07740;Name=D5F88_RS07740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07740;old_locus_tag=D5F88_07750 NZ_QYTI01000064.1 Protein Homology CDS 5754 6566 . - 0 ID=cds-WP_016480602.1;Parent=gene-D5F88_RS07740;Dbxref=GenBank:WP_016480602.1;Name=WP_016480602.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000228641.1;locus_tag=D5F88_RS07740;product=HAD family hydrolase;protein_id=WP_016480602.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 6719 7558 . - . ID=gene-D5F88_RS07745;Name=D5F88_RS07745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07745;old_locus_tag=D5F88_07755 NZ_QYTI01000064.1 Protein Homology CDS 6719 7558 . - 0 ID=cds-WP_086163289.1;Parent=gene-D5F88_RS07745;Dbxref=GenBank:WP_086163289.1;Name=WP_086163289.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000047575.1;locus_tag=D5F88_RS07745;product=SDR family oxidoreductase;protein_id=WP_086163289.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 7682 8728 . - . ID=gene-D5F88_RS07750;Name=uxuA;gbkey=Gene;gene=uxuA;gene_biotype=protein_coding;locus_tag=D5F88_RS07750;old_locus_tag=D5F88_07760 NZ_QYTI01000064.1 Protein Homology CDS 7682 8728 . - 0 ID=cds-WP_000426049.1;Parent=gene-D5F88_RS07750;Dbxref=GenBank:WP_000426049.1;Name=WP_000426049.1;Ontology_term=GO:0006064,GO:0008927;gbkey=CDS;gene=uxuA;go_function=mannonate dehydratase activity|0008927||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000426051.1;locus_tag=D5F88_RS07750;product=mannonate dehydratase;protein_id=WP_000426049.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 8746 10146 . - . ID=gene-D5F88_RS07755;Name=uxaC;gbkey=Gene;gene=uxaC;gene_biotype=protein_coding;locus_tag=D5F88_RS07755;old_locus_tag=D5F88_07765 NZ_QYTI01000064.1 Protein Homology CDS 8746 10146 . - 0 ID=cds-WP_016480600.1;Parent=gene-D5F88_RS07755;Dbxref=GenBank:WP_016480600.1;Name=WP_016480600.1;Ontology_term=GO:0006064,GO:0008880;gbkey=CDS;gene=uxaC;go_function=glucuronate isomerase activity|0008880||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771913.1;locus_tag=D5F88_RS07755;product=glucuronate isomerase;protein_id=WP_016480600.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 10163 10873 . - . ID=gene-D5F88_RS07760;Name=D5F88_RS07760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07760;old_locus_tag=D5F88_07770 NZ_QYTI01000064.1 Protein Homology CDS 10163 10873 . - 0 ID=cds-WP_372538328.1;Parent=gene-D5F88_RS07760;Dbxref=GenBank:WP_372538328.1;Name=WP_372538328.1;Ontology_term=GO:0008675,GO:0008700;gbkey=CDS;go_function=2-dehydro-3-deoxy-phosphogluconate aldolase activity|0008675||IEA,(R%2CS)-4-hydroxy-2-oxoglutarate aldolase activity|0008700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001089773.1;locus_tag=D5F88_RS07760;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_372538328.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 10897 11568 . - . ID=gene-D5F88_RS07770;Name=D5F88_RS07770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07770;old_locus_tag=D5F88_07780 NZ_QYTI01000064.1 Protein Homology CDS 10897 11568 . - 0 ID=cds-WP_000113632.1;Parent=gene-D5F88_RS07770;Dbxref=GenBank:WP_000113632.1;Name=WP_000113632.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000113633.1;locus_tag=D5F88_RS07770;product=FadR/GntR family transcriptional regulator;protein_id=WP_000113632.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 11597 13396 . - . ID=gene-D5F88_RS07775;Name=uidA;gbkey=Gene;gene=uidA;gene_biotype=protein_coding;locus_tag=D5F88_RS07775;old_locus_tag=D5F88_07785 NZ_QYTI01000064.1 Protein Homology CDS 11597 13396 . - 0 ID=cds-WP_016480599.1;Parent=gene-D5F88_RS07775;Dbxref=GenBank:WP_016480599.1;Name=WP_016480599.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=uidA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767467.1;locus_tag=D5F88_RS07775;product=beta-glucuronidase;protein_id=WP_016480599.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 13413 14438 . - . ID=gene-D5F88_RS07780;Name=D5F88_RS07780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07780;old_locus_tag=D5F88_07790 NZ_QYTI01000064.1 Protein Homology CDS 13413 14438 . - 0 ID=cds-WP_001062633.1;Parent=gene-D5F88_RS07780;Dbxref=GenBank:WP_001062633.1;Name=WP_001062633.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480598.1;locus_tag=D5F88_RS07780;product=PfkB family carbohydrate kinase;protein_id=WP_001062633.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 14505 16055 . - . ID=gene-D5F88_RS07785;Name=D5F88_RS07785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07785;old_locus_tag=D5F88_07795 NZ_QYTI01000064.1 Protein Homology CDS 14505 16055 . - 0 ID=cds-WP_000416100.1;Parent=gene-D5F88_RS07785;Dbxref=GenBank:WP_000416100.1;Name=WP_000416100.1;Ontology_term=GO:0008643,GO:0055085,GO:0015293,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA,transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000416102.1;locus_tag=D5F88_RS07785;product=MFS transporter;protein_id=WP_000416100.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 16261 17253 . - . ID=gene-D5F88_RS07790;Name=D5F88_RS07790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07790;old_locus_tag=D5F88_07800 NZ_QYTI01000064.1 Protein Homology CDS 16261 17253 . - 0 ID=cds-WP_086163288.1;Parent=gene-D5F88_RS07790;Dbxref=GenBank:WP_086163288.1;Name=WP_086163288.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000770077.1;locus_tag=D5F88_RS07790;product=D-lactate dehydrogenase;protein_id=WP_086163288.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 17267 18325 . - . ID=gene-D5F88_RS07795;Name=D5F88_RS07795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07795;old_locus_tag=D5F88_07805 NZ_QYTI01000064.1 Protein Homology CDS 17267 18325 . - 0 ID=cds-WP_001286427.1;Parent=gene-D5F88_RS07795;Dbxref=GenBank:WP_001286427.1;Name=WP_001286427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631865.1;locus_tag=D5F88_RS07795;product=PTS transporter subunit IIC;protein_id=WP_001286427.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 18518 19402 . + . ID=gene-D5F88_RS07800;Name=D5F88_RS07800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07800;old_locus_tag=D5F88_07810 NZ_QYTI01000064.1 Protein Homology CDS 18518 19402 . + 0 ID=cds-WP_000354839.1;Parent=gene-D5F88_RS07800;Dbxref=GenBank:WP_000354839.1;Name=WP_000354839.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000354842.1;locus_tag=D5F88_RS07800;product=LysR family transcriptional regulator;protein_id=WP_000354839.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 19439 20257 . - . ID=gene-D5F88_RS07805;Name=D5F88_RS07805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07805;old_locus_tag=D5F88_07815 NZ_QYTI01000064.1 Protein Homology CDS 19439 20257 . - 0 ID=cds-WP_016502752.1;Parent=gene-D5F88_RS07805;Dbxref=GenBank:WP_016502752.1;Name=WP_016502752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058456.1;locus_tag=D5F88_RS07805;product=hypothetical protein;protein_id=WP_016502752.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 20421 21194 . - . ID=gene-D5F88_RS07810;Name=D5F88_RS07810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07810;old_locus_tag=D5F88_07820 NZ_QYTI01000064.1 Protein Homology CDS 20421 21194 . - 0 ID=cds-WP_000011926.1;Parent=gene-D5F88_RS07810;Dbxref=GenBank:WP_000011926.1;Name=WP_000011926.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771489.1;locus_tag=D5F88_RS07810;product=ABC transporter permease;protein_id=WP_000011926.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 21191 21847 . - . ID=gene-D5F88_RS07815;Name=D5F88_RS07815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07815;old_locus_tag=D5F88_07825 NZ_QYTI01000064.1 Protein Homology CDS 21191 21847 . - 0 ID=cds-WP_086163287.1;Parent=gene-D5F88_RS07815;Dbxref=GenBank:WP_086163287.1;Name=WP_086163287.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058454.1;locus_tag=D5F88_RS07815;product=ABC transporter ATP-binding protein;protein_id=WP_086163287.1;transl_table=11 NZ_QYTI01000064.1 RefSeq gene 22064 22702 . + . ID=gene-D5F88_RS07820;Name=D5F88_RS07820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07820;old_locus_tag=D5F88_07830 NZ_QYTI01000064.1 Protein Homology CDS 22064 22702 . + 0 ID=cds-WP_000478529.1;Parent=gene-D5F88_RS07820;Dbxref=GenBank:WP_000478529.1;Name=WP_000478529.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502751.1;locus_tag=D5F88_RS07820;product=VTT domain-containing protein;protein_id=WP_000478529.1;transl_table=11 ##sequence-region NZ_QYTI01000065.1 1 58521 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000065.1 RefSeq region 1 58521 . + . ID=NZ_QYTI01000065.1:1..58521;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000065.1 RefSeq pseudogene 1 355 . - . ID=gene-D5F88_RS07825;Name=D5F88_RS07825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS07825;old_locus_tag=D5F88_07835;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000065.1 Protein Homology CDS 1 355 . - 0 ID=cds-D5F88_RS07825;Parent=gene-D5F88_RS07825;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS07825;partial=true;product=transposase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000065.1 RefSeq pseudogene 425 1555 . + . ID=gene-D5F88_RS07830;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=pseudogene;locus_tag=D5F88_RS07830;old_locus_tag=D5F88_07840;partial=true;pseudo=true;start_range=.,425 NZ_QYTI01000065.1 Protein Homology CDS 425 1555 . + 0 ID=cds-D5F88_RS07830;Parent=gene-D5F88_RS07830;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0000154,GO:0008649;gbkey=CDS;gene=rlmD;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=rRNA modification|0000154||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017284934.1;locus_tag=D5F88_RS07830;partial=true;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;pseudo=true;start_range=.,425;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 1824 2588 . + . ID=gene-D5F88_RS07835;Name=D5F88_RS07835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07835;old_locus_tag=D5F88_07845 NZ_QYTI01000065.1 Protein Homology CDS 1824 2588 . + 0 ID=cds-WP_124773323.1;Parent=gene-D5F88_RS07835;Dbxref=GenBank:WP_124773323.1;Name=WP_124773323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771410.1;locus_tag=D5F88_RS07835;product=nucleoside phosphorylase;protein_id=WP_124773323.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 2622 3050 . + . ID=gene-D5F88_RS07840;Name=D5F88_RS07840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07840;old_locus_tag=D5F88_07850 NZ_QYTI01000065.1 Protein Homology CDS 2622 3050 . + 0 ID=cds-WP_017647004.1;Parent=gene-D5F88_RS07840;Dbxref=GenBank:WP_017647004.1;Name=WP_017647004.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768361.1;locus_tag=D5F88_RS07840;product=GNAT family N-acetyltransferase;protein_id=WP_017647004.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 3239 6940 . + . ID=gene-D5F88_RS07845;Name=D5F88_RS07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07845;old_locus_tag=D5F88_07855 NZ_QYTI01000065.1 Protein Homology CDS 3239 6940 . + 0 ID=cds-WP_086163238.1;Parent=gene-D5F88_RS07845;Dbxref=GenBank:WP_086163238.1;Name=WP_086163238.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646417.1;locus_tag=D5F88_RS07845;product=S8 family serine peptidase;protein_id=WP_086163238.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 7150 8058 . + . ID=gene-D5F88_RS07850;Name=D5F88_RS07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07850;old_locus_tag=D5F88_07860 NZ_QYTI01000065.1 Protein Homology CDS 7150 8058 . + 0 ID=cds-WP_000848920.1;Parent=gene-D5F88_RS07850;Dbxref=GenBank:WP_000848920.1;Name=WP_000848920.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000848915.1;locus_tag=D5F88_RS07850;product=glycosyltransferase family 2 protein;protein_id=WP_000848920.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 8613 9623 . + . ID=gene-D5F88_RS07855;Name=nrdF;gbkey=Gene;gene=nrdF;gene_biotype=protein_coding;locus_tag=D5F88_RS07855;old_locus_tag=D5F88_07865 NZ_QYTI01000065.1 Protein Homology CDS 8613 9623 . + 0 ID=cds-WP_001192437.1;Parent=gene-D5F88_RS07855;Dbxref=GenBank:WP_001192437.1;Name=WP_001192437.1;Ontology_term=GO:0009263,GO:0004748,GO:0005971;gbkey=CDS;gene=nrdF;go_component=ribonucleoside-diphosphate reductase complex|0005971||IEA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001192438.1;locus_tag=D5F88_RS07855;product=class 1b ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_001192437.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 9624 10037 . + . ID=gene-D5F88_RS07860;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;locus_tag=D5F88_RS07860;old_locus_tag=D5F88_07870 NZ_QYTI01000065.1 Protein Homology CDS 9624 10037 . + 0 ID=cds-WP_000378632.1;Parent=gene-D5F88_RS07860;Dbxref=GenBank:WP_000378632.1;Name=WP_000378632.1;Ontology_term=GO:0009263,GO:0036211,GO:0010181;gbkey=CDS;gene=nrdI;go_function=FMN binding|0010181||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA,protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767518.1;locus_tag=D5F88_RS07860;product=class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI;protein_id=WP_000378632.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 10039 12207 . + . ID=gene-D5F88_RS07865;Name=nrdE;gbkey=Gene;gene=nrdE;gene_biotype=protein_coding;locus_tag=D5F88_RS07865;old_locus_tag=D5F88_07875 NZ_QYTI01000065.1 Protein Homology CDS 10039 12207 . + 0 ID=cds-WP_000194376.1;Parent=gene-D5F88_RS07865;Dbxref=GenBank:WP_000194376.1;Name=WP_000194376.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdE;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058380.1;locus_tag=D5F88_RS07865;product=class 1b ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_000194376.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 12270 15437 . + . ID=gene-D5F88_RS07870;Name=hupY;gbkey=Gene;gene=hupY;gene_biotype=protein_coding;gene_synonym=lrrG;locus_tag=D5F88_RS07870;old_locus_tag=D5F88_07880 NZ_QYTI01000065.1 Protein Homology CDS 12270 15437 . + 0 ID=cds-WP_016502565.1;Parent=gene-D5F88_RS07870;Dbxref=GenBank:WP_016502565.1;Name=WP_016502565.1;gbkey=CDS;gene=hupY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000162177.1;locus_tag=D5F88_RS07870;product=leucine-rich repeat adhesin HupY/LrrG;protein_id=WP_016502565.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 15450 15839 . + . ID=gene-D5F88_RS07875;Name=D5F88_RS07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07875;old_locus_tag=D5F88_07885 NZ_QYTI01000065.1 Protein Homology CDS 15450 15839 . + 0 ID=cds-WP_000632621.1;Parent=gene-D5F88_RS07875;Dbxref=GenBank:WP_000632621.1;Name=WP_000632621.1;Ontology_term=GO:0010181,GO:0016491;gbkey=CDS;go_function=FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000632624.1;locus_tag=D5F88_RS07875;product=pyridoxamine 5'-phosphate oxidase family protein;protein_id=WP_000632621.1;transl_table=11 NZ_QYTI01000065.1 RefSeq pseudogene 15883 16374 . - . ID=gene-D5F88_RS07880;Name=D5F88_RS07880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS07880;old_locus_tag=D5F88_07890;pseudo=true NZ_QYTI01000065.1 Protein Homology CDS 15883 16374 . - 0 ID=cds-D5F88_RS07880;Parent=gene-D5F88_RS07880;Note=internal stop;Ontology_term=GO:0005488;gbkey=CDS;go_function=binding|0005488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648418.1;locus_tag=D5F88_RS07880;product=GyrI-like domain-containing protein;pseudo=true;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 16612 16896 . - . ID=gene-D5F88_RS07885;Name=D5F88_RS07885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07885;old_locus_tag=D5F88_07895 NZ_QYTI01000065.1 Protein Homology CDS 16612 16896 . - 0 ID=cds-WP_000955821.1;Parent=gene-D5F88_RS07885;Dbxref=GenBank:WP_000955821.1;Name=WP_000955821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000955821.1;locus_tag=D5F88_RS07885;product=DUF2316 family protein;protein_id=WP_000955821.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 16983 17300 . - . ID=gene-D5F88_RS07890;Name=D5F88_RS07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07890;old_locus_tag=D5F88_07900 NZ_QYTI01000065.1 Protein Homology CDS 16983 17300 . - 0 ID=cds-WP_000660666.1;Parent=gene-D5F88_RS07890;Dbxref=GenBank:WP_000660666.1;Name=WP_000660666.1;Ontology_term=GO:0051920;gbkey=CDS;go_function=peroxiredoxin activity|0051920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000660666.1;locus_tag=D5F88_RS07890;product=carboxymuconolactone decarboxylase family protein;protein_id=WP_000660666.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 17324 17719 . - . ID=gene-D5F88_RS07895;Name=D5F88_RS07895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07895;old_locus_tag=D5F88_07905 NZ_QYTI01000065.1 Protein Homology CDS 17324 17719 . - 0 ID=cds-WP_016502567.1;Parent=gene-D5F88_RS07895;Dbxref=GenBank:WP_016502567.1;Name=WP_016502567.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001158469.1;locus_tag=D5F88_RS07895;product=cupin domain-containing protein;protein_id=WP_016502567.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 17729 18118 . - . ID=gene-D5F88_RS07900;Name=nmlR;gbkey=Gene;gene=nmlR;gene_biotype=protein_coding;locus_tag=D5F88_RS07900;old_locus_tag=D5F88_07910 NZ_QYTI01000065.1 Protein Homology CDS 17729 18118 . - 0 ID=cds-WP_000547676.1;Parent=gene-D5F88_RS07900;Dbxref=GenBank:WP_000547676.1;Name=WP_000547676.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=nmlR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000547677.1;locus_tag=D5F88_RS07900;product=stress response transcriptional regulator NmlR;protein_id=WP_000547676.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 18134 19171 . - . ID=gene-D5F88_RS07905;Name=D5F88_RS07905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07905;old_locus_tag=D5F88_07915 NZ_QYTI01000065.1 Protein Homology CDS 18134 19171 . - 0 ID=cds-WP_016502568.1;Parent=gene-D5F88_RS07905;Dbxref=GenBank:WP_016502568.1;Name=WP_016502568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000861552.1;locus_tag=D5F88_RS07905;product=zinc-dependent alcohol dehydrogenase family protein;protein_id=WP_016502568.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 19281 20135 . - . ID=gene-D5F88_RS07910;Name=D5F88_RS07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07910;old_locus_tag=D5F88_07920 NZ_QYTI01000065.1 Protein Homology CDS 19281 20135 . - 0 ID=cds-WP_016502569.1;Parent=gene-D5F88_RS07910;Dbxref=GenBank:WP_016502569.1;Name=WP_016502569.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631788.1;locus_tag=D5F88_RS07910;product=aldo/keto reductase;protein_id=WP_016502569.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 20220 21083 . - . ID=gene-D5F88_RS07915;Name=D5F88_RS07915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07915;old_locus_tag=D5F88_07925 NZ_QYTI01000065.1 Protein Homology CDS 20220 21083 . - 0 ID=cds-WP_124749466.1;Parent=gene-D5F88_RS07915;Dbxref=GenBank:WP_124749466.1;Name=WP_124749466.1;Ontology_term=GO:0008324,GO:0046872;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000203281.1;locus_tag=D5F88_RS07915;product=cation diffusion facilitator family transporter;protein_id=WP_124749466.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 21215 21739 . + . ID=gene-D5F88_RS07920;Name=D5F88_RS07920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07920;old_locus_tag=D5F88_07930 NZ_QYTI01000065.1 Protein Homology CDS 21215 21739 . + 0 ID=cds-WP_016502571.1;Parent=gene-D5F88_RS07920;Dbxref=GenBank:WP_016502571.1;Name=WP_016502571.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000237805.1;locus_tag=D5F88_RS07920;product=TetR/AcrR family transcriptional regulator;protein_id=WP_016502571.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 22430 22651 . + . ID=gene-D5F88_RS07930;Name=D5F88_RS07930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07930;old_locus_tag=D5F88_07940 NZ_QYTI01000065.1 Protein Homology CDS 22430 22651 . + 0 ID=cds-WP_016502572.1;Parent=gene-D5F88_RS07930;Dbxref=GenBank:WP_016502572.1;Name=WP_016502572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001186893.1;locus_tag=D5F88_RS07930;product=hypothetical protein;protein_id=WP_016502572.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 22752 22822 . - . ID=gene-D5F88_RS07935;Name=D5F88_RS07935;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS07935;old_locus_tag=D5F88_07945 NZ_QYTI01000065.1 tRNAscan-SE tRNA 22752 22822 . - . ID=rna-D5F88_RS07935;Parent=gene-D5F88_RS07935;anticodon=(pos:complement(22788..22790));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS07935;product=tRNA-Thr NZ_QYTI01000065.1 tRNAscan-SE exon 22752 22822 . - . ID=exon-D5F88_RS07935-1;Parent=rna-D5F88_RS07935;anticodon=(pos:complement(22788..22790));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS07935;product=tRNA-Thr NZ_QYTI01000065.1 RefSeq gene 22894 23199 . - . ID=gene-D5F88_RS07940;Name=D5F88_RS07940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07940;old_locus_tag=D5F88_07950 NZ_QYTI01000065.1 Protein Homology CDS 22894 23199 . - 0 ID=cds-WP_000484318.1;Parent=gene-D5F88_RS07940;Dbxref=GenBank:WP_000484318.1;Name=WP_000484318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000484319.1;locus_tag=D5F88_RS07940;product=hypothetical protein;protein_id=WP_000484318.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 23201 23539 . - . ID=gene-D5F88_RS07945;Name=D5F88_RS07945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07945;old_locus_tag=D5F88_07955 NZ_QYTI01000065.1 Protein Homology CDS 23201 23539 . - 0 ID=cds-WP_000120348.1;Parent=gene-D5F88_RS07945;Dbxref=GenBank:WP_000120348.1;Name=WP_000120348.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000120348.1;locus_tag=D5F88_RS07945;product=cupin domain-containing protein;protein_id=WP_000120348.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 23560 24315 . - . ID=gene-D5F88_RS07950;Name=D5F88_RS07950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07950;old_locus_tag=D5F88_07960 NZ_QYTI01000065.1 Protein Homology CDS 23560 24315 . - 0 ID=cds-WP_124773325.1;Parent=gene-D5F88_RS07950;Dbxref=GenBank:WP_124773325.1;Name=WP_124773325.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000018433.1;locus_tag=D5F88_RS07950;product=class I SAM-dependent methyltransferase;protein_id=WP_124773325.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 24515 26584 . + . ID=gene-D5F88_RS07955;Name=D5F88_RS07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07955;old_locus_tag=D5F88_07965 NZ_QYTI01000065.1 Protein Homology CDS 24515 26584 . + 0 ID=cds-WP_257638779.1;Parent=gene-D5F88_RS07955;Dbxref=GenBank:WP_257638779.1;Name=WP_257638779.1;Ontology_term=GO:0006355,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001042758.1;locus_tag=D5F88_RS07955;product=BglG family transcription antiterminator;protein_id=WP_257638779.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 26699 27148 . + . ID=gene-D5F88_RS07960;Name=D5F88_RS07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07960;old_locus_tag=D5F88_07970 NZ_QYTI01000065.1 Protein Homology CDS 26699 27148 . + 0 ID=cds-WP_041165653.1;Parent=gene-D5F88_RS07960;Dbxref=GenBank:WP_041165653.1;Name=WP_041165653.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000570642.1;locus_tag=D5F88_RS07960;product=PTS sugar transporter subunit IIA;protein_id=WP_041165653.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 27167 27445 . + . ID=gene-D5F88_RS07965;Name=D5F88_RS07965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07965;old_locus_tag=D5F88_07975 NZ_QYTI01000065.1 Protein Homology CDS 27167 27445 . + 0 ID=cds-WP_000734006.1;Parent=gene-D5F88_RS07965;Dbxref=GenBank:WP_000734006.1;Name=WP_000734006.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000734008.1;locus_tag=D5F88_RS07965;product=PTS sugar transporter subunit IIB;protein_id=WP_000734006.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 27457 28794 . + . ID=gene-D5F88_RS07970;Name=D5F88_RS07970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07970;old_locus_tag=D5F88_07980 NZ_QYTI01000065.1 Protein Homology CDS 27457 28794 . + 0 ID=cds-WP_016502576.1;Parent=gene-D5F88_RS07970;Dbxref=GenBank:WP_016502576.1;Name=WP_016502576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648410.1;locus_tag=D5F88_RS07970;product=PTS galactitol transporter subunit IIC;protein_id=WP_016502576.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 28817 29647 . + . ID=gene-D5F88_RS07975;Name=rhaD;gbkey=Gene;gene=rhaD;gene_biotype=protein_coding;locus_tag=D5F88_RS07975;old_locus_tag=D5F88_07985 NZ_QYTI01000065.1 Protein Homology CDS 28817 29647 . + 0 ID=cds-WP_000221976.1;Parent=gene-D5F88_RS07975;Dbxref=GenBank:WP_000221976.1;Name=WP_000221976.1;gbkey=CDS;gene=rhaD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631792.1;locus_tag=D5F88_RS07975;product=rhamnulose-1-phosphate aldolase;protein_id=WP_000221976.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 29782 30246 . + . ID=gene-D5F88_RS07980;Name=D5F88_RS07980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07980;old_locus_tag=D5F88_07990 NZ_QYTI01000065.1 Protein Homology CDS 29782 30246 . + 0 ID=cds-WP_016480380.1;Parent=gene-D5F88_RS07980;Dbxref=GenBank:WP_016480380.1;Name=WP_016480380.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000888633.1;locus_tag=D5F88_RS07980;product=PTS sugar transporter subunit IIA;protein_id=WP_016480380.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 30259 31590 . + . ID=gene-D5F88_RS07985;Name=D5F88_RS07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07985;old_locus_tag=D5F88_07995 NZ_QYTI01000065.1 Protein Homology CDS 30259 31590 . + 0 ID=cds-WP_086163240.1;Parent=gene-D5F88_RS07985;Dbxref=GenBank:WP_086163240.1;Name=WP_086163240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000884276.1;locus_tag=D5F88_RS07985;product=PTS galactitol transporter subunit IIC;protein_id=WP_086163240.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 31592 31876 . + . ID=gene-D5F88_RS07990;Name=D5F88_RS07990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07990;old_locus_tag=D5F88_08000 NZ_QYTI01000065.1 Protein Homology CDS 31592 31876 . + 0 ID=cds-WP_000734774.1;Parent=gene-D5F88_RS07990;Dbxref=GenBank:WP_000734774.1;Name=WP_000734774.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000734775.1;locus_tag=D5F88_RS07990;product=PTS sugar transporter subunit IIB;protein_id=WP_000734774.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 32161 32991 . - . ID=gene-D5F88_RS07995;Name=D5F88_RS07995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS07995;old_locus_tag=D5F88_08005 NZ_QYTI01000065.1 Protein Homology CDS 32161 32991 . - 0 ID=cds-WP_001015729.1;Parent=gene-D5F88_RS07995;Dbxref=GenBank:WP_001015729.1;Name=WP_001015729.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001015730.1;locus_tag=D5F88_RS07995;product=AraC family transcriptional regulator;protein_id=WP_001015729.1;transl_table=11 NZ_QYTI01000065.1 RefSeq pseudogene 33230 34506 . + . ID=gene-D5F88_RS08000;Name=D5F88_RS08000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS08000;old_locus_tag=D5F88_08010;pseudo=true NZ_QYTI01000065.1 Protein Homology CDS 33230 34506 . + 0 ID=cds-D5F88_RS08000;Parent=gene-D5F88_RS08000;Note=frameshifted;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000738089.1;locus_tag=D5F88_RS08000;product=ABC transporter substrate-binding protein;pseudo=true;transl_table=11 NZ_QYTI01000065.1 RefSeq pseudogene 34590 35481 . + . ID=gene-D5F88_RS08005;Name=D5F88_RS08005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS08005;old_locus_tag=D5F88_08015;pseudo=true NZ_QYTI01000065.1 Protein Homology CDS 34590 35481 . + 0 ID=cds-D5F88_RS08005;Parent=gene-D5F88_RS08005;Note=frameshifted;Ontology_term=GO:0008643,GO:0055085,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648409.1;locus_tag=D5F88_RS08005;product=carbohydrate ABC transporter permease;pseudo=true;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 35494 36327 . + . ID=gene-D5F88_RS08010;Name=D5F88_RS08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08010;old_locus_tag=D5F88_08020 NZ_QYTI01000065.1 Protein Homology CDS 35494 36327 . + 0 ID=cds-WP_000278569.1;Parent=gene-D5F88_RS08010;Dbxref=GenBank:WP_000278569.1;Name=WP_000278569.1;Ontology_term=GO:0008643,GO:0055085;gbkey=CDS;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000278569.1;locus_tag=D5F88_RS08010;product=carbohydrate ABC transporter permease;protein_id=WP_000278569.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 36337 38538 . + . ID=gene-D5F88_RS08015;Name=D5F88_RS08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08015;old_locus_tag=D5F88_08025 NZ_QYTI01000065.1 Protein Homology CDS 36337 38538 . + 0 ID=cds-WP_086163242.1;Parent=gene-D5F88_RS08015;Dbxref=GenBank:WP_086163242.1;Name=WP_086163242.1;Ontology_term=GO:0000272,GO:0004557,GO:0046872,GO:0070403;gbkey=CDS;go_function=alpha-galactosidase activity|0004557||IEA,metal ion binding|0046872||IEA,NAD+ binding|0070403||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001122135.1;locus_tag=D5F88_RS08015;product=alpha-galactosidase;protein_id=WP_086163242.1;transl_table=11 NZ_QYTI01000065.1 RefSeq pseudogene 38628 39799 . + . ID=gene-D5F88_RS08020;Name=D5F88_RS08020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS08020;old_locus_tag=D5F88_08030;pseudo=true NZ_QYTI01000065.1 Protein Homology CDS 38628 39799 . + 0 ID=cds-D5F88_RS08020;Parent=gene-D5F88_RS08020;Note=frameshifted;Ontology_term=GO:0006012,GO:0046835,GO:0004335,GO:0005524;gbkey=CDS;go_function=galactokinase activity|0004335||IEA,ATP binding|0005524||IEA;go_process=galactose metabolic process|0006012||IEA,carbohydrate phosphorylation|0046835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014334262.1;locus_tag=D5F88_RS08020;product=galactokinase;pseudo=true;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 39809 41293 . + . ID=gene-D5F88_RS08025;Name=galT;gbkey=Gene;gene=galT;gene_biotype=protein_coding;locus_tag=D5F88_RS08025;old_locus_tag=D5F88_08035 NZ_QYTI01000065.1 Protein Homology CDS 39809 41293 . + 0 ID=cds-WP_016502580.1;Parent=gene-D5F88_RS08025;Dbxref=GenBank:WP_016502580.1;Name=WP_016502580.1;Ontology_term=GO:0019388,GO:0017103,GO:0005737;gbkey=CDS;gene=galT;go_component=cytoplasm|0005737||IEA;go_function=UTP:galactose-1-phosphate uridylyltransferase activity|0017103||IEA;go_process=galactose catabolic process|0019388||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058395.1;locus_tag=D5F88_RS08025;product=UDP-glucose--hexose-1-phosphate uridylyltransferase;protein_id=WP_016502580.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 41295 42290 . + . ID=gene-D5F88_RS08030;Name=galE;gbkey=Gene;gene=galE;gene_biotype=protein_coding;locus_tag=D5F88_RS08030;old_locus_tag=D5F88_08040 NZ_QYTI01000065.1 Protein Homology CDS 41295 42290 . + 0 ID=cds-WP_086163243.1;Parent=gene-D5F88_RS08030;Dbxref=GenBank:WP_086163243.1;Name=WP_086163243.1;Ontology_term=GO:0006012,GO:0003978;gbkey=CDS;gene=galE;go_function=UDP-glucose 4-epimerase activity|0003978||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000996515.1;locus_tag=D5F88_RS08030;product=UDP-glucose 4-epimerase GalE;protein_id=WP_086163243.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 42416 43417 . + . ID=gene-D5F88_RS08035;Name=D5F88_RS08035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08035;old_locus_tag=D5F88_08045 NZ_QYTI01000065.1 Protein Homology CDS 42416 43417 . + 0 ID=cds-WP_016502582.1;Parent=gene-D5F88_RS08035;Dbxref=GenBank:WP_016502582.1;Name=WP_016502582.1;Ontology_term=GO:0005975,GO:0016857,GO:0030246;gbkey=CDS;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA,carbohydrate binding|0030246||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648405.1;locus_tag=D5F88_RS08035;product=aldose epimerase family protein;protein_id=WP_016502582.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 43608 43862 . + . ID=gene-D5F88_RS08040;Name=D5F88_RS08040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08040;old_locus_tag=D5F88_08050 NZ_QYTI01000065.1 Protein Homology CDS 43608 43862 . + 0 ID=cds-WP_000119699.1;Parent=gene-D5F88_RS08040;Dbxref=GenBank:WP_000119699.1;Name=WP_000119699.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771609.1;locus_tag=D5F88_RS08040;product=DUF1912 family protein;protein_id=WP_000119699.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 43971 44282 . + . ID=gene-D5F88_RS08045;Name=D5F88_RS08045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08045;old_locus_tag=D5F88_08055 NZ_QYTI01000065.1 Protein Homology CDS 43971 44282 . + 0 ID=cds-WP_016502583.1;Parent=gene-D5F88_RS08045;Dbxref=GenBank:WP_016502583.1;Name=WP_016502583.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001119099.1;locus_tag=D5F88_RS08045;product=hypothetical protein;protein_id=WP_016502583.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 44551 45129 . + . ID=gene-D5F88_RS08050;Name=D5F88_RS08050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08050;old_locus_tag=D5F88_08060 NZ_QYTI01000065.1 Protein Homology CDS 44551 45129 . + 0 ID=cds-WP_086163244.1;Parent=gene-D5F88_RS08050;Dbxref=GenBank:WP_086163244.1;Name=WP_086163244.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001166188.1;locus_tag=D5F88_RS08050;product=GNAT family N-acetyltransferase;protein_id=WP_086163244.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 45126 45818 . + . ID=gene-D5F88_RS08055;Name=D5F88_RS08055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08055;old_locus_tag=D5F88_08065 NZ_QYTI01000065.1 Protein Homology CDS 45126 45818 . + 0 ID=cds-WP_000997618.1;Parent=gene-D5F88_RS08055;Dbxref=GenBank:WP_000997618.1;Name=WP_000997618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648404.1;locus_tag=D5F88_RS08055;product=hypothetical protein;protein_id=WP_000997618.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 45840 48491 . + . ID=gene-D5F88_RS08060;Name=D5F88_RS08060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08060;old_locus_tag=D5F88_08070 NZ_QYTI01000065.1 Protein Homology CDS 45840 48491 . + 0 ID=cds-WP_016502585.1;Parent=gene-D5F88_RS08060;Dbxref=GenBank:WP_016502585.1;Name=WP_016502585.1;Ontology_term=GO:0006438,GO:0000166,GO:0004812,GO:0004832,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,valine-tRNA ligase activity|0004832||IEA,ATP binding|0005524||IEA;go_process=valyl-tRNA aminoacylation|0006438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014623308.1;locus_tag=D5F88_RS08060;product=valine--tRNA ligase;protein_id=WP_016502585.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 48709 49488 . - . ID=gene-D5F88_RS08065;Name=D5F88_RS08065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08065;old_locus_tag=D5F88_08075 NZ_QYTI01000065.1 Protein Homology CDS 48709 49488 . - 0 ID=cds-WP_000934859.1;Parent=gene-D5F88_RS08065;Dbxref=GenBank:WP_000934859.1;Name=WP_000934859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000934864.1;locus_tag=D5F88_RS08065;product=hypothetical protein;protein_id=WP_000934859.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 50500 52923 . + . ID=gene-D5F88_RS08075;Name=D5F88_RS08075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08075;old_locus_tag=D5F88_08085 NZ_QYTI01000065.1 Protein Homology CDS 50500 52923 . + 0 ID=cds-WP_086163245.1;Parent=gene-D5F88_RS08075;Dbxref=GenBank:WP_086163245.1;Name=WP_086163245.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000988347.1;locus_tag=D5F88_RS08075;product=CRISPR-associated helicase/endonuclease Cas3;protein_id=WP_086163245.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 53056 53784 . + . ID=gene-D5F88_RS08080;Name=cas5c;gbkey=Gene;gene=cas5c;gene_biotype=protein_coding;locus_tag=D5F88_RS08080;old_locus_tag=D5F88_08090 NZ_QYTI01000065.1 Protein Homology CDS 53056 53784 . + 0 ID=cds-WP_124758732.1;Parent=gene-D5F88_RS08080;Dbxref=GenBank:WP_124758732.1;Name=WP_124758732.1;Ontology_term=GO:0043571,GO:0051607,GO:0004519;gbkey=CDS;gene=cas5c;go_function=endonuclease activity|0004519||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011528831.1;locus_tag=D5F88_RS08080;product=type I-C CRISPR-associated protein Cas5c;protein_id=WP_124758732.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 53784 55682 . + . ID=gene-D5F88_RS08085;Name=cas8c;gbkey=Gene;gene=cas8c;gene_biotype=protein_coding;locus_tag=D5F88_RS08085;old_locus_tag=D5F88_08095 NZ_QYTI01000065.1 Protein Homology CDS 53784 55682 . + 0 ID=cds-WP_124759120.1;Parent=gene-D5F88_RS08085;Dbxref=GenBank:WP_124759120.1;Name=WP_124759120.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas8c;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647433.1;locus_tag=D5F88_RS08085;product=type I-C CRISPR-associated protein Cas8c/Csd1;protein_id=WP_124759120.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 55687 56535 . + . ID=gene-D5F88_RS08090;Name=cas7c;gbkey=Gene;gene=cas7c;gene_biotype=protein_coding;locus_tag=D5F88_RS08090;old_locus_tag=D5F88_08100 NZ_QYTI01000065.1 Protein Homology CDS 55687 56535 . + 0 ID=cds-WP_086163516.1;Parent=gene-D5F88_RS08090;Dbxref=GenBank:WP_086163516.1;Name=WP_086163516.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas7c;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010922510.1;locus_tag=D5F88_RS08090;product=type I-C CRISPR-associated protein Cas7/Csd2;protein_id=WP_086163516.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 56537 57208 . + . ID=gene-D5F88_RS08095;Name=cas4;gbkey=Gene;gene=cas4;gene_biotype=protein_coding;locus_tag=D5F88_RS08095;old_locus_tag=D5F88_08105 NZ_QYTI01000065.1 Protein Homology CDS 56537 57208 . + 0 ID=cds-WP_000262367.1;Parent=gene-D5F88_RS08095;Dbxref=GenBank:WP_000262367.1;Name=WP_000262367.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas4;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000262367.1;locus_tag=D5F88_RS08095;product=CRISPR-associated protein Cas4;protein_id=WP_000262367.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 57205 58209 . + . ID=gene-D5F88_RS08100;Name=cas1c;gbkey=Gene;gene=cas1c;gene_biotype=protein_coding;locus_tag=D5F88_RS08100;old_locus_tag=D5F88_08110 NZ_QYTI01000065.1 Protein Homology CDS 57205 58209 . + 0 ID=cds-WP_086163515.1;Parent=gene-D5F88_RS08100;Dbxref=GenBank:WP_086163515.1;Name=WP_086163515.1;Ontology_term=GO:0043571,GO:0051607,GO:0003676,GO:0004519,GO:0046872;gbkey=CDS;gene=cas1c;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019314881.1;locus_tag=D5F88_RS08100;product=type I-C CRISPR-associated endonuclease Cas1c;protein_id=WP_086163515.1;transl_table=11 NZ_QYTI01000065.1 RefSeq gene 58220 58521 . + . ID=gene-D5F88_RS08105;Name=cas2;end_range=58521,.;gbkey=Gene;gene=cas2;gene_biotype=protein_coding;locus_tag=D5F88_RS08105;old_locus_tag=D5F88_08115;partial=true NZ_QYTI01000065.1 Protein Homology CDS 58220 58521 . + 0 ID=cds-WP_124773329.1;Parent=gene-D5F88_RS08105;Dbxref=GenBank:WP_124773329.1;Name=WP_124773329.1;Ontology_term=GO:0043571,GO:0004521;end_range=58521,.;gbkey=CDS;gene=cas2;go_function=RNA endonuclease activity|0004521||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002280569.1;locus_tag=D5F88_RS08105;partial=true;product=CRISPR-associated endonuclease Cas2;protein_id=WP_124773329.1;transl_table=11 ##sequence-region NZ_QYTI01000066.1 1 1471 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000066.1 RefSeq region 1 1471 . + . ID=NZ_QYTI01000066.1:1..1471;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000066.1 RefSeq gene 1 549 . + . ID=gene-D5F88_RS08110;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=D5F88_RS08110;old_locus_tag=D5F88_08120;partial=true;start_range=.,1 NZ_QYTI01000066.1 Protein Homology CDS 1 549 . + 0 ID=cds-WP_124773332.1;Parent=gene-D5F88_RS08110;Dbxref=GenBank:WP_124773332.1;Name=WP_124773332.1;Ontology_term=GO:0006412,GO:0003735;gbkey=CDS;gene=rpsC;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000529931.1;locus_tag=D5F88_RS08110;partial=true;product=30S ribosomal protein S3;protein_id=WP_124773332.1;start_range=.,1;transl_table=11 NZ_QYTI01000066.1 RefSeq gene 553 966 . + . ID=gene-D5F88_RS08115;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=D5F88_RS08115;old_locus_tag=D5F88_08125 NZ_QYTI01000066.1 Protein Homology CDS 553 966 . + 0 ID=cds-WP_000960950.1-2;Parent=gene-D5F88_RS08115;Dbxref=GenBank:WP_000960950.1;Name=WP_000960950.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843;gbkey=CDS;gene=rplP;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003029477.1;locus_tag=D5F88_RS08115;product=50S ribosomal protein L16;protein_id=WP_000960950.1;transl_table=11 NZ_QYTI01000066.1 RefSeq gene 976 1182 . + . ID=gene-D5F88_RS08120;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=D5F88_RS08120;old_locus_tag=D5F88_08130 NZ_QYTI01000066.1 Protein Homology CDS 976 1182 . + 0 ID=cds-WP_000775731.1-2;Parent=gene-D5F88_RS08120;Dbxref=GenBank:WP_000775731.1;Name=WP_000775731.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006739716.1;locus_tag=D5F88_RS08120;product=50S ribosomal protein L29;protein_id=WP_000775731.1;transl_table=11 NZ_QYTI01000066.1 RefSeq gene 1208 1468 . + . ID=gene-D5F88_RS08125;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=D5F88_RS08125;old_locus_tag=D5F88_08135 NZ_QYTI01000066.1 Protein Homology CDS 1208 1468 . + 0 ID=cds-WP_124773334.1;Parent=gene-D5F88_RS08125;Dbxref=GenBank:WP_124773334.1;Name=WP_124773334.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006738952.1;locus_tag=D5F88_RS08125;product=30S ribosomal protein S17;protein_id=WP_124773334.1;transl_table=11 ##sequence-region NZ_QYTI01000067.1 1 27351 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000067.1 RefSeq region 1 27351 . + . ID=NZ_QYTI01000067.1:1..27351;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000067.1 RefSeq gene 1 1927 . - . ID=gene-D5F88_RS08130;Name=D5F88_RS08130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08130;old_locus_tag=D5F88_08140;partial=true;start_range=.,1 NZ_QYTI01000067.1 Protein Homology CDS 1 1927 . - 0 ID=cds-WP_142997445.1;Parent=gene-D5F88_RS08130;Dbxref=GenBank:WP_142997445.1;Name=WP_142997445.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767169.1;locus_tag=D5F88_RS08130;partial=true;product=helix-hairpin-helix domain-containing protein;protein_id=WP_142997445.1;start_range=.,1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 2033 3076 . - . ID=gene-D5F88_RS08135;Name=D5F88_RS08135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08135;old_locus_tag=D5F88_08145 NZ_QYTI01000067.1 Protein Homology CDS 2033 3076 . - 0 ID=cds-WP_086163296.1;Parent=gene-D5F88_RS08135;Dbxref=GenBank:WP_086163296.1;Name=WP_086163296.1;Ontology_term=GO:0010181,GO:0016491;gbkey=CDS;go_function=FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000571058.1;locus_tag=D5F88_RS08135;product=LLM class flavin-dependent oxidoreductase;protein_id=WP_086163296.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 3209 3337 . + . ID=gene-D5F88_RS08140;Name=D5F88_RS08140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08140;old_locus_tag=D5F88_08150 NZ_QYTI01000067.1 Protein Homology CDS 3209 3337 . + 0 ID=cds-WP_001018624.1;Parent=gene-D5F88_RS08140;Dbxref=GenBank:WP_001018624.1;Name=WP_001018624.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001018624.1;locus_tag=D5F88_RS08140;product=SPJ_0845 family protein;protein_id=WP_001018624.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 3343 4245 . + . ID=gene-D5F88_RS08145;Name=D5F88_RS08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08145;old_locus_tag=D5F88_08155 NZ_QYTI01000067.1 Protein Homology CDS 3343 4245 . + 0 ID=cds-WP_000350891.1;Parent=gene-D5F88_RS08145;Dbxref=GenBank:WP_000350891.1;Name=WP_000350891.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480616.1;locus_tag=D5F88_RS08145;product=permease;protein_id=WP_000350891.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 4245 5057 . + . ID=gene-D5F88_RS08150;Name=D5F88_RS08150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08150;old_locus_tag=D5F88_08160 NZ_QYTI01000067.1 Protein Homology CDS 4245 5057 . + 0 ID=cds-WP_086163295.1;Parent=gene-D5F88_RS08150;Dbxref=GenBank:WP_086163295.1;Name=WP_086163295.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000617812.1;locus_tag=D5F88_RS08150;product=TIGR03943 family putative permease subunit;protein_id=WP_086163295.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 5094 6692 . - . ID=gene-D5F88_RS08155;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=D5F88_RS08155;old_locus_tag=D5F88_08165 NZ_QYTI01000067.1 Protein Homology CDS 5094 6692 . - 0 ID=cds-WP_016502769.1;Parent=gene-D5F88_RS08155;Dbxref=GenBank:WP_016502769.1;Name=WP_016502769.1;Ontology_term=GO:0006614,GO:0009306,GO:0003924,GO:0005047;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=SRP-dependent cotranslational protein targeting to membrane|0006614||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000522263.1;locus_tag=D5F88_RS08155;product=signal recognition particle-docking protein FtsY;protein_id=WP_016502769.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 6692 7516 . - . ID=gene-D5F88_RS08160;Name=D5F88_RS08160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08160;old_locus_tag=D5F88_08170 NZ_QYTI01000067.1 Protein Homology CDS 6692 7516 . - 0 ID=cds-WP_016502768.1;Parent=gene-D5F88_RS08160;Dbxref=GenBank:WP_016502768.1;Name=WP_016502768.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285093.1;locus_tag=D5F88_RS08160;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_016502768.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 7516 8313 . - . ID=gene-D5F88_RS08165;Name=D5F88_RS08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08165;old_locus_tag=D5F88_08175 NZ_QYTI01000067.1 Protein Homology CDS 7516 8313 . - 0 ID=cds-WP_000594097.1;Parent=gene-D5F88_RS08165;Dbxref=GenBank:WP_000594097.1;Name=WP_000594097.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480613.1;locus_tag=D5F88_RS08165;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_000594097.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 8404 11943 . - . ID=gene-D5F88_RS08170;Name=smc;gbkey=Gene;gene=smc;gene_biotype=protein_coding;locus_tag=D5F88_RS08170;old_locus_tag=D5F88_08180 NZ_QYTI01000067.1 Protein Homology CDS 8404 11943 . - 0 ID=cds-WP_086163294.1;Parent=gene-D5F88_RS08170;Dbxref=GenBank:WP_086163294.1;Name=WP_086163294.1;Ontology_term=GO:0007059,GO:0030261,GO:0005524;gbkey=CDS;gene=smc;go_function=ATP binding|0005524||IEA;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650979.1;locus_tag=D5F88_RS08170;product=chromosome segregation protein SMC;protein_id=WP_086163294.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 11951 12637 . - . ID=gene-D5F88_RS08175;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=D5F88_RS08175;old_locus_tag=D5F88_08185 NZ_QYTI01000067.1 Protein Homology CDS 11951 12637 . - 0 ID=cds-WP_086163293.1;Parent=gene-D5F88_RS08175;Dbxref=GenBank:WP_086163293.1;Name=WP_086163293.1;Ontology_term=GO:0006364,GO:0006396,GO:0003723,GO:0004525;gbkey=CDS;gene=rnc;go_function=RNA binding|0003723||IEA,ribonuclease III activity|0004525||IEA;go_process=rRNA processing|0006364||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631881.1;locus_tag=D5F88_RS08175;product=ribonuclease III;protein_id=WP_086163293.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 12813 13181 . - . ID=gene-D5F88_RS08180;Name=D5F88_RS08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08180;old_locus_tag=D5F88_08190 NZ_QYTI01000067.1 Protein Homology CDS 12813 13181 . - 0 ID=cds-WP_000719385.1;Parent=gene-D5F88_RS08180;Dbxref=GenBank:WP_000719385.1;Name=WP_000719385.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647157.1;locus_tag=D5F88_RS08180;product=YbaN family protein;protein_id=WP_000719385.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 13184 13993 . - . ID=gene-D5F88_RS08185;Name=D5F88_RS08185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08185;old_locus_tag=D5F88_08195 NZ_QYTI01000067.1 Protein Homology CDS 13184 13993 . - 0 ID=cds-WP_001289498.1;Parent=gene-D5F88_RS08185;Dbxref=GenBank:WP_001289498.1;Name=WP_001289498.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631879.1;locus_tag=D5F88_RS08185;product=MBL fold metallo-hydrolase;protein_id=WP_001289498.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 13997 15346 . - . ID=gene-D5F88_RS08190;Name=vicK;gbkey=Gene;gene=vicK;gene_biotype=protein_coding;locus_tag=D5F88_RS08190;old_locus_tag=D5F88_08200 NZ_QYTI01000067.1 Protein Homology CDS 13997 15346 . - 0 ID=cds-WP_001065469.1;Parent=gene-D5F88_RS08190;Dbxref=GenBank:WP_001065469.1;Name=WP_001065469.1;gbkey=CDS;gene=vicK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001065466.1;locus_tag=D5F88_RS08190;product=cell wall metabolism sensor histidine kinase VicK;protein_id=WP_001065469.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 15339 16049 . - . ID=gene-D5F88_RS08195;Name=yycF;gbkey=Gene;gene=yycF;gene_biotype=protein_coding;locus_tag=D5F88_RS08195;old_locus_tag=D5F88_08205 NZ_QYTI01000067.1 Protein Homology CDS 15339 16049 . - 0 ID=cds-WP_000722052.1;Parent=gene-D5F88_RS08195;Dbxref=GenBank:WP_000722052.1;Name=WP_000722052.1;gbkey=CDS;gene=yycF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000722051.1;locus_tag=D5F88_RS08195;product=response regulator YycF;protein_id=WP_000722052.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 16389 17144 . + . ID=gene-D5F88_RS08200;Name=D5F88_RS08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08200;old_locus_tag=D5F88_08210 NZ_QYTI01000067.1 Protein Homology CDS 16389 17144 . + 0 ID=cds-WP_016480611.1;Parent=gene-D5F88_RS08200;Dbxref=GenBank:WP_016480611.1;Name=WP_016480611.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000053145.1;locus_tag=D5F88_RS08200;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_016480611.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 17156 17956 . + . ID=gene-D5F88_RS08205;Name=D5F88_RS08205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08205;old_locus_tag=D5F88_08215 NZ_QYTI01000067.1 Protein Homology CDS 17156 17956 . + 0 ID=cds-WP_086163292.1;Parent=gene-D5F88_RS08205;Dbxref=GenBank:WP_086163292.1;Name=WP_086163292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000946176.1;locus_tag=D5F88_RS08205;product=transporter substrate-binding domain-containing protein;protein_id=WP_086163292.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 17969 18664 . + . ID=gene-D5F88_RS08210;Name=D5F88_RS08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08210;old_locus_tag=D5F88_08220 NZ_QYTI01000067.1 Protein Homology CDS 17969 18664 . + 0 ID=cds-WP_016502763.1;Parent=gene-D5F88_RS08210;Dbxref=GenBank:WP_016502763.1;Name=WP_016502763.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502763.1;locus_tag=D5F88_RS08210;product=amino acid ABC transporter permease;protein_id=WP_016502763.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 18676 19326 . + . ID=gene-D5F88_RS08215;Name=D5F88_RS08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08215;old_locus_tag=D5F88_08225 NZ_QYTI01000067.1 Protein Homology CDS 18676 19326 . + 0 ID=cds-WP_000100034.1;Parent=gene-D5F88_RS08215;Dbxref=GenBank:WP_000100034.1;Name=WP_000100034.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000100031.1;locus_tag=D5F88_RS08215;product=amino acid ABC transporter permease;protein_id=WP_000100034.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 19375 19941 . - . ID=gene-D5F88_RS08220;Name=D5F88_RS08220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08220;old_locus_tag=D5F88_08230 NZ_QYTI01000067.1 Protein Homology CDS 19375 19941 . - 0 ID=cds-WP_000592389.1;Parent=gene-D5F88_RS08220;Dbxref=GenBank:WP_000592389.1;Name=WP_000592389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644199.1;locus_tag=D5F88_RS08220;product=PepSY domain-containing protein;protein_id=WP_000592389.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 20108 21127 . - . ID=gene-D5F88_RS08225;Name=D5F88_RS08225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08225;old_locus_tag=D5F88_08235 NZ_QYTI01000067.1 Protein Homology CDS 20108 21127 . - 0 ID=cds-WP_016502762.1;Parent=gene-D5F88_RS08225;Dbxref=GenBank:WP_016502762.1;Name=WP_016502762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001140268.1;locus_tag=D5F88_RS08225;product=DUF3114 domain-containing protein;protein_id=WP_016502762.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 21225 21929 . - . ID=gene-D5F88_RS08230;Name=D5F88_RS08230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08230;old_locus_tag=D5F88_08240 NZ_QYTI01000067.1 Protein Homology CDS 21225 21929 . - 0 ID=cds-WP_001261248.1;Parent=gene-D5F88_RS08230;Dbxref=GenBank:WP_001261248.1;Name=WP_001261248.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649585.1;locus_tag=D5F88_RS08230;product=response regulator transcription factor;protein_id=WP_001261248.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 22151 24094 . - . ID=gene-D5F88_RS08235;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=D5F88_RS08235;old_locus_tag=D5F88_08245 NZ_QYTI01000067.1 Protein Homology CDS 22151 24094 . - 0 ID=cds-WP_000591004.1;Parent=gene-D5F88_RS08235;Dbxref=GenBank:WP_000591004.1;Name=WP_000591004.1;Ontology_term=GO:0006435,GO:0004829,GO:0005524,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA,ATP binding|0005524||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645271.1;locus_tag=D5F88_RS08235;product=threonine--tRNA ligase;protein_id=WP_000591004.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 24551 25885 . - . ID=gene-D5F88_RS08240;Name=D5F88_RS08240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08240;old_locus_tag=D5F88_08250 NZ_QYTI01000067.1 Protein Homology CDS 24551 25885 . - 0 ID=cds-WP_016502761.1;Parent=gene-D5F88_RS08240;Dbxref=GenBank:WP_016502761.1;Name=WP_016502761.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644095.1;locus_tag=D5F88_RS08240;product=glycosyltransferase family 4 protein;protein_id=WP_016502761.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 25887 26885 . - . ID=gene-D5F88_RS08245;Name=D5F88_RS08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08245;old_locus_tag=D5F88_08255 NZ_QYTI01000067.1 Protein Homology CDS 25887 26885 . - 0 ID=cds-WP_016502760.1;Parent=gene-D5F88_RS08245;Dbxref=GenBank:WP_016502760.1;Name=WP_016502760.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502760.1;locus_tag=D5F88_RS08245;product=glycosyltransferase family 4 protein;protein_id=WP_016502760.1;transl_table=11 NZ_QYTI01000067.1 RefSeq gene 26930 27351 . - . ID=gene-D5F88_RS08250;Name=D5F88_RS08250;end_range=27351,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08250;old_locus_tag=D5F88_08260;partial=true NZ_QYTI01000067.1 Protein Homology CDS 26930 27351 . - 2 ID=cds-WP_124773336.1;Parent=gene-D5F88_RS08250;Dbxref=GenBank:WP_124773336.1;Name=WP_124773336.1;Ontology_term=GO:0004553;end_range=27351,.;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000180581.1;locus_tag=D5F88_RS08250;partial=true;product=alpha-amylase domain-containing protein;protein_id=WP_124773336.1;transl_table=11 ##sequence-region NZ_QYTI01000068.1 1 16936 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000068.1 RefSeq region 1 16936 . + . ID=NZ_QYTI01000068.1:1..16936;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000068.1 RefSeq gene 65 538 . + . ID=gene-D5F88_RS08255;Name=D5F88_RS08255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08255;old_locus_tag=D5F88_08265 NZ_QYTI01000068.1 Protein Homology CDS 65 538 . + 0 ID=cds-WP_000458427.1;Parent=gene-D5F88_RS08255;Dbxref=GenBank:WP_000458427.1;Name=WP_000458427.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649570.1;locus_tag=D5F88_RS08255;product=PTS sugar transporter subunit IIA;protein_id=WP_000458427.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 540 845 . + . ID=gene-D5F88_RS08260;Name=D5F88_RS08260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08260;old_locus_tag=D5F88_08270 NZ_QYTI01000068.1 Protein Homology CDS 540 845 . + 0 ID=cds-WP_000590543.1;Parent=gene-D5F88_RS08260;Dbxref=GenBank:WP_000590543.1;Name=WP_000590543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000590540.1;locus_tag=D5F88_RS08260;product=PTS sugar transporter subunit IIB;protein_id=WP_000590543.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 885 2333 . + . ID=gene-D5F88_RS08265;Name=D5F88_RS08265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08265;old_locus_tag=D5F88_08275 NZ_QYTI01000068.1 Protein Homology CDS 885 2333 . + 0 ID=cds-WP_001195839.1;Parent=gene-D5F88_RS08265;Dbxref=GenBank:WP_001195839.1;Name=WP_001195839.1;Ontology_term=GO:0009401,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001195826.1;locus_tag=D5F88_RS08265;product=PTS galactitol transporter subunit IIC;protein_id=WP_001195839.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 2573 5023 . + . ID=gene-D5F88_RS08270;Name=D5F88_RS08270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08270;old_locus_tag=D5F88_08280 NZ_QYTI01000068.1 Protein Homology CDS 2573 5023 . + 0 ID=cds-WP_016503264.1;Parent=gene-D5F88_RS08270;Dbxref=GenBank:WP_016503264.1;Name=WP_016503264.1;Ontology_term=GO:0005975,GO:0004308;gbkey=CDS;go_function=exo-alpha-sialidase activity|0004308||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771303.1;locus_tag=D5F88_RS08270;product=sialidase family protein;protein_id=WP_016503264.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 5270 5695 . + . ID=gene-D5F88_RS08275;Name=lacA;gbkey=Gene;gene=lacA;gene_biotype=protein_coding;locus_tag=D5F88_RS08275;old_locus_tag=D5F88_08285 NZ_QYTI01000068.1 Protein Homology CDS 5270 5695 . + 0 ID=cds-WP_016503263.1;Parent=gene-D5F88_RS08275;Dbxref=GenBank:WP_016503263.1;Name=WP_016503263.1;gbkey=CDS;gene=lacA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503263.1;locus_tag=D5F88_RS08275;product=galactose-6-phosphate isomerase subunit LacA;protein_id=WP_016503263.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 5716 6231 . + . ID=gene-D5F88_RS08280;Name=lacB;gbkey=Gene;gene=lacB;gene_biotype=protein_coding;locus_tag=D5F88_RS08280;old_locus_tag=D5F88_08290 NZ_QYTI01000068.1 Protein Homology CDS 5716 6231 . + 0 ID=cds-WP_000686152.1;Parent=gene-D5F88_RS08280;Dbxref=GenBank:WP_000686152.1;Name=WP_000686152.1;gbkey=CDS;gene=lacB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012027025.1;locus_tag=D5F88_RS08280;product=galactose-6-phosphate isomerase subunit LacB;protein_id=WP_000686152.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 6242 7174 . + . ID=gene-D5F88_RS08285;Name=D5F88_RS08285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08285;old_locus_tag=D5F88_08295 NZ_QYTI01000068.1 Protein Homology CDS 6242 7174 . + 0 ID=cds-WP_016503262.1;Parent=gene-D5F88_RS08285;Dbxref=GenBank:WP_016503262.1;Name=WP_016503262.1;Ontology_term=GO:0019512,GO:0009024;gbkey=CDS;go_function=tagatose-6-phosphate kinase activity|0009024||IEA;go_process=lactose catabolic process via tagatose-6-phosphate|0019512||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000604238.1;locus_tag=D5F88_RS08285;product=tagatose-6-phosphate kinase;protein_id=WP_016503262.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 7176 8153 . + . ID=gene-D5F88_RS08290;Name=lacD;gbkey=Gene;gene=lacD;gene_biotype=protein_coding;locus_tag=D5F88_RS08290;old_locus_tag=D5F88_08300 NZ_QYTI01000068.1 Protein Homology CDS 7176 8153 . + 0 ID=cds-WP_000524689.1;Parent=gene-D5F88_RS08290;Dbxref=GenBank:WP_000524689.1;Name=WP_000524689.1;Ontology_term=GO:0019512,GO:0009025;gbkey=CDS;gene=lacD;go_function=tagatose-bisphosphate aldolase activity|0009025||IEA;go_process=lactose catabolic process via tagatose-6-phosphate|0019512||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000524687.1;locus_tag=D5F88_RS08290;product=tagatose-bisphosphate aldolase;protein_id=WP_000524689.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 8207 9103 . + . ID=gene-D5F88_RS08295;Name=D5F88_RS08295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08295;old_locus_tag=D5F88_08305 NZ_QYTI01000068.1 Protein Homology CDS 8207 9103 . + 0 ID=cds-WP_086163494.1;Parent=gene-D5F88_RS08295;Dbxref=GenBank:WP_086163494.1;Name=WP_086163494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001018631.1;locus_tag=D5F88_RS08295;product=aldose 1-epimerase family protein;protein_id=WP_086163494.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 9198 10049 . + . ID=gene-D5F88_RS08300;Name=D5F88_RS08300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08300;old_locus_tag=D5F88_08310 NZ_QYTI01000068.1 Protein Homology CDS 9198 10049 . + 0 ID=cds-WP_000345943.1;Parent=gene-D5F88_RS08300;Dbxref=GenBank:WP_000345943.1;Name=WP_000345943.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000347002.1;locus_tag=D5F88_RS08300;product=helix-turn-helix domain-containing protein;protein_id=WP_000345943.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 10150 11283 . + . ID=gene-D5F88_RS08305;Name=D5F88_RS08305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08305;old_locus_tag=D5F88_08315 NZ_QYTI01000068.1 Protein Homology CDS 10150 11283 . + 0 ID=cds-WP_000229966.1;Parent=gene-D5F88_RS08305;Dbxref=GenBank:WP_000229966.1;Name=WP_000229966.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002988014.1;locus_tag=D5F88_RS08305;product=ABC transporter ATP-binding protein;protein_id=WP_000229966.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 11412 13019 . + . ID=gene-D5F88_RS08310;Name=D5F88_RS08310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08310;old_locus_tag=D5F88_08320 NZ_QYTI01000068.1 Protein Homology CDS 11412 13019 . + 0 ID=cds-WP_000716720.1;Parent=gene-D5F88_RS08310;Dbxref=GenBank:WP_000716720.1;Name=WP_000716720.1;Ontology_term=GO:0005975,GO:0009311,GO:0004553,GO:0004556,GO:0004574;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,alpha-amylase activity|0004556||IEA,oligo-1%2C6-glucosidase activity|0004574||IEA;go_process=carbohydrate metabolic process|0005975||IEA,oligosaccharide metabolic process|0009311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481260.1;locus_tag=D5F88_RS08310;product=glycoside hydrolase family 13 protein;protein_id=WP_000716720.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 13107 14102 . + . ID=gene-D5F88_RS08315;Name=galE;gbkey=Gene;gene=galE;gene_biotype=protein_coding;locus_tag=D5F88_RS08315;old_locus_tag=D5F88_08325 NZ_QYTI01000068.1 Protein Homology CDS 13107 14102 . + 0 ID=cds-WP_000279626.1;Parent=gene-D5F88_RS08315;Dbxref=GenBank:WP_000279626.1;Name=WP_000279626.1;Ontology_term=GO:0006012,GO:0003978;gbkey=CDS;gene=galE;go_function=UDP-glucose 4-epimerase activity|0003978||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000279623.1;locus_tag=D5F88_RS08315;product=UDP-glucose 4-epimerase GalE;protein_id=WP_000279626.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 14123 14803 . - . ID=gene-D5F88_RS08320;Name=D5F88_RS08320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08320;old_locus_tag=D5F88_08330 NZ_QYTI01000068.1 Protein Homology CDS 14123 14803 . - 0 ID=cds-WP_000382776.1;Parent=gene-D5F88_RS08320;Dbxref=GenBank:WP_000382776.1;Name=WP_000382776.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503260.1;locus_tag=D5F88_RS08320;product=response regulator;protein_id=WP_000382776.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 14805 16331 . - . ID=gene-D5F88_RS08325;Name=D5F88_RS08325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08325;old_locus_tag=D5F88_08335 NZ_QYTI01000068.1 Protein Homology CDS 14805 16331 . - 0 ID=cds-WP_124773338.1;Parent=gene-D5F88_RS08325;Dbxref=GenBank:WP_124773338.1;Name=WP_124773338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000728121.1;locus_tag=D5F88_RS08325;product=cache domain-containing protein;protein_id=WP_124773338.1;transl_table=11 NZ_QYTI01000068.1 RefSeq gene 16485 16936 . + . ID=gene-D5F88_RS08330;Name=D5F88_RS08330;end_range=16936,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08330;old_locus_tag=D5F88_08340;partial=true NZ_QYTI01000068.1 Protein Homology CDS 16485 16936 . + 0 ID=cds-WP_185696285.1;Parent=gene-D5F88_RS08330;Dbxref=GenBank:WP_185696285.1;Name=WP_185696285.1;Ontology_term=GO:0015711,GO:0008514,GO:0016020;end_range=16936,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=organic anion transmembrane transporter activity|0008514||IEA;go_process=organic anion transport|0015711||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000786046.1;locus_tag=D5F88_RS08330;partial=true;product=2-hydroxycarboxylate transporter family protein;protein_id=WP_185696285.1;transl_table=11 ##sequence-region NZ_QYTI01000069.1 1 26650 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000069.1 RefSeq region 1 26650 . + . ID=NZ_QYTI01000069.1:1..26650;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000069.1 RefSeq pseudogene 1 332 . + . ID=gene-D5F88_RS08335;Name=D5F88_RS08335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS08335;old_locus_tag=D5F88_08345;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000069.1 Protein Homology CDS 1 332 . + 2 ID=cds-D5F88_RS08335;Parent=gene-D5F88_RS08335;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000093963.1;locus_tag=D5F88_RS08335;partial=true;product=peptide ABC transporter substrate-binding protein;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 365 1138 . - . ID=gene-D5F88_RS08340;Name=D5F88_RS08340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08340;old_locus_tag=D5F88_08350 NZ_QYTI01000069.1 Protein Homology CDS 365 1138 . - 0 ID=cds-WP_086163329.1;Parent=gene-D5F88_RS08340;Dbxref=GenBank:WP_086163329.1;Name=WP_086163329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000622397.1;locus_tag=D5F88_RS08340;product=DUF3307 domain-containing protein;protein_id=WP_086163329.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 1128 1814 . - . ID=gene-D5F88_RS08345;Name=D5F88_RS08345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08345;old_locus_tag=D5F88_08355 NZ_QYTI01000069.1 Protein Homology CDS 1128 1814 . - 0 ID=cds-WP_000280308.1;Parent=gene-D5F88_RS08345;Dbxref=GenBank:WP_000280308.1;Name=WP_000280308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000280304.1;locus_tag=D5F88_RS08345;product=SatD family protein;protein_id=WP_000280308.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 1881 3446 . - . ID=gene-D5F88_RS08350;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=D5F88_RS08350;old_locus_tag=D5F88_08360 NZ_QYTI01000069.1 Protein Homology CDS 1881 3446 . - 0 ID=cds-WP_000863593.1;Parent=gene-D5F88_RS08350;Dbxref=GenBank:WP_000863593.1;Name=WP_000863593.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0005525,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA,GTP binding|0005525||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648039.1;locus_tag=D5F88_RS08350;product=signal recognition particle protein;protein_id=WP_000863593.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 3464 3796 . - . ID=gene-D5F88_RS08355;Name=D5F88_RS08355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08355;old_locus_tag=D5F88_08365 NZ_QYTI01000069.1 Protein Homology CDS 3464 3796 . - 0 ID=cds-WP_000402075.1;Parent=gene-D5F88_RS08355;Dbxref=GenBank:WP_000402075.1;Name=WP_000402075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649495.1;locus_tag=D5F88_RS08355;product=putative DNA-binding protein;protein_id=WP_000402075.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 3885 5198 . - . ID=gene-D5F88_RS08360;Name=D5F88_RS08360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08360;old_locus_tag=D5F88_08370 NZ_QYTI01000069.1 Protein Homology CDS 3885 5198 . - 0 ID=cds-WP_000042576.1;Parent=gene-D5F88_RS08360;Dbxref=GenBank:WP_000042576.1;Name=WP_000042576.1;Ontology_term=GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000042569.1;locus_tag=D5F88_RS08360;product=sensor histidine kinase;protein_id=WP_000042576.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 5182 5862 . - . ID=gene-D5F88_RS08365;Name=D5F88_RS08365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08365;old_locus_tag=D5F88_08375 NZ_QYTI01000069.1 Protein Homology CDS 5182 5862 . - 0 ID=cds-WP_000590620.1;Parent=gene-D5F88_RS08365;Dbxref=GenBank:WP_000590620.1;Name=WP_000590620.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644248.1;locus_tag=D5F88_RS08365;product=response regulator transcription factor;protein_id=WP_000590620.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 6024 8567 . - . ID=gene-D5F88_RS08370;Name=D5F88_RS08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08370;old_locus_tag=D5F88_08380 NZ_QYTI01000069.1 Protein Homology CDS 6024 8567 . - 0 ID=cds-WP_086163330.1;Parent=gene-D5F88_RS08370;Dbxref=GenBank:WP_086163330.1;Name=WP_086163330.1;Ontology_term=GO:0006508,GO:0008237,GO:0008270;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000859386.1;locus_tag=D5F88_RS08370;product=M1 family metallopeptidase;protein_id=WP_086163330.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 8713 9366 . - . ID=gene-D5F88_RS08375;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=D5F88_RS08375;old_locus_tag=D5F88_08385 NZ_QYTI01000069.1 Protein Homology CDS 8713 9366 . - 0 ID=cds-WP_000946330.1;Parent=gene-D5F88_RS08375;Dbxref=GenBank:WP_000946330.1;Name=WP_000946330.1;Ontology_term=GO:0006817,GO:0030643,GO:0045936;gbkey=CDS;gene=phoU;go_process=phosphate ion transport|0006817||IEA,intracellular phosphate ion homeostasis|0030643||IEA,negative regulation of phosphate metabolic process|0045936||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002294804.1;locus_tag=D5F88_RS08375;product=phosphate signaling complex protein PhoU;protein_id=WP_000946330.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 9400 10158 . - . ID=gene-D5F88_RS08380;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=D5F88_RS08380;old_locus_tag=D5F88_08390 NZ_QYTI01000069.1 Protein Homology CDS 9400 10158 . - 0 ID=cds-WP_000193363.1;Parent=gene-D5F88_RS08380;Dbxref=GenBank:WP_000193363.1;Name=WP_000193363.1;Ontology_term=GO:0006817,GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014294590.1;locus_tag=D5F88_RS08380;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_000193363.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 10170 10973 . - . ID=gene-D5F88_RS08385;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=D5F88_RS08385;old_locus_tag=D5F88_08395 NZ_QYTI01000069.1 Protein Homology CDS 10170 10973 . - 0 ID=cds-WP_000852852.1;Parent=gene-D5F88_RS08385;Dbxref=GenBank:WP_000852852.1;Name=WP_000852852.1;Ontology_term=GO:0006817,GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000852852.1;locus_tag=D5F88_RS08385;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_000852852.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 10985 11872 . - . ID=gene-D5F88_RS08390;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=D5F88_RS08390;old_locus_tag=D5F88_08400 NZ_QYTI01000069.1 Protein Homology CDS 10985 11872 . - 0 ID=cds-WP_000992189.1;Parent=gene-D5F88_RS08390;Dbxref=GenBank:WP_000992189.1;Name=WP_000992189.1;Ontology_term=GO:0006817,GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstA;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000992189.1;locus_tag=D5F88_RS08390;product=phosphate ABC transporter permease PstA;protein_id=WP_000992189.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 11862 12779 . - . ID=gene-D5F88_RS08395;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=D5F88_RS08395;old_locus_tag=D5F88_08405 NZ_QYTI01000069.1 Protein Homology CDS 11862 12779 . - 0 ID=cds-WP_000795717.1;Parent=gene-D5F88_RS08395;Dbxref=GenBank:WP_000795717.1;Name=WP_000795717.1;Ontology_term=GO:0006817,GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstC;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018378778.1;locus_tag=D5F88_RS08395;product=phosphate ABC transporter permease subunit PstC;protein_id=WP_000795717.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 12825 13691 . - . ID=gene-D5F88_RS08400;Name=D5F88_RS08400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08400;old_locus_tag=D5F88_08410 NZ_QYTI01000069.1 Protein Homology CDS 12825 13691 . - 0 ID=cds-WP_180383572.1;Parent=gene-D5F88_RS08400;Dbxref=GenBank:WP_180383572.1;Name=WP_180383572.1;Ontology_term=GO:0042301;gbkey=CDS;go_function=phosphate ion binding|0042301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647148.1;locus_tag=D5F88_RS08400;product=phosphate ABC transporter substrate-binding protein PstS family protein;protein_id=WP_180383572.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 13870 15180 . - . ID=gene-D5F88_RS08405;Name=D5F88_RS08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08405;old_locus_tag=D5F88_08415 NZ_QYTI01000069.1 Protein Homology CDS 13870 15180 . - 0 ID=cds-WP_016502859.1;Parent=gene-D5F88_RS08405;Dbxref=GenBank:WP_016502859.1;Name=WP_016502859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000775396.1;locus_tag=D5F88_RS08405;product=RsmF rRNA methyltransferase first C-terminal domain-containing protein;protein_id=WP_016502859.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 15248 16012 . - . ID=gene-D5F88_RS08410;Name=D5F88_RS08410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08410;old_locus_tag=D5F88_08420 NZ_QYTI01000069.1 Protein Homology CDS 15248 16012 . - 0 ID=cds-WP_086163332.1;Parent=gene-D5F88_RS08410;Dbxref=GenBank:WP_086163332.1;Name=WP_086163332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000338953.1;locus_tag=D5F88_RS08410;product=inositol monophosphatase family protein;protein_id=WP_086163332.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 16002 16283 . - . ID=gene-D5F88_RS08415;Name=D5F88_RS08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08415;old_locus_tag=D5F88_08425 NZ_QYTI01000069.1 Protein Homology CDS 16002 16283 . - 0 ID=cds-WP_000625908.1;Parent=gene-D5F88_RS08415;Dbxref=GenBank:WP_000625908.1;Name=WP_000625908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000625902.1;locus_tag=D5F88_RS08415;product=UPF0223 family protein;protein_id=WP_000625908.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 16276 16689 . - . ID=gene-D5F88_RS08420;Name=D5F88_RS08420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08420;old_locus_tag=D5F88_08430 NZ_QYTI01000069.1 Protein Homology CDS 16276 16689 . - 0 ID=cds-WP_000631264.1;Parent=gene-D5F88_RS08420;Dbxref=GenBank:WP_000631264.1;Name=WP_000631264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000631264.1;locus_tag=D5F88_RS08420;product=Spx/MgsR family RNA polymerase-binding regulatory protein;protein_id=WP_000631264.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 16732 17664 . - . ID=gene-D5F88_RS08425;Name=D5F88_RS08425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08425;old_locus_tag=D5F88_08435 NZ_QYTI01000069.1 Protein Homology CDS 16732 17664 . - 0 ID=cds-WP_000690918.1;Parent=gene-D5F88_RS08425;Dbxref=GenBank:WP_000690918.1;Name=WP_000690918.1;Ontology_term=GO:0003919;gbkey=CDS;go_function=FMN adenylyltransferase activity|0003919||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000690917.1;locus_tag=D5F88_RS08425;product=bifunctional riboflavin kinase/FAD synthetase;protein_id=WP_000690918.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 17677 18561 . - . ID=gene-D5F88_RS08430;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=D5F88_RS08430;old_locus_tag=D5F88_08440 NZ_QYTI01000069.1 Protein Homology CDS 17677 18561 . - 0 ID=cds-WP_001883507.1;Parent=gene-D5F88_RS08430;Dbxref=GenBank:WP_001883507.1;Name=WP_001883507.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001876923.1;locus_tag=D5F88_RS08430;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_001883507.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 18653 19084 . - . ID=gene-D5F88_RS08435;Name=D5F88_RS08435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08435;old_locus_tag=D5F88_08445 NZ_QYTI01000069.1 Protein Homology CDS 18653 19084 . - 0 ID=cds-WP_000702702.1;Parent=gene-D5F88_RS08435;Dbxref=GenBank:WP_000702702.1;Name=WP_000702702.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631985.1;locus_tag=D5F88_RS08435;product=GNAT family N-acetyltransferase;protein_id=WP_000702702.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 19097 20368 . - . ID=gene-D5F88_RS08440;Name=D5F88_RS08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08440;old_locus_tag=D5F88_08450 NZ_QYTI01000069.1 Protein Homology CDS 19097 20368 . - 0 ID=cds-WP_124758806.1;Parent=gene-D5F88_RS08440;Dbxref=GenBank:WP_124758806.1;Name=WP_124758806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001002580.1;locus_tag=D5F88_RS08440;product=DUF2130 domain-containing protein;protein_id=WP_124758806.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 20402 20992 . - . ID=gene-D5F88_RS08445;Name=D5F88_RS08445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08445;old_locus_tag=D5F88_08455 NZ_QYTI01000069.1 Protein Homology CDS 20402 20992 . - 0 ID=cds-WP_001135930.1;Parent=gene-D5F88_RS08445;Dbxref=GenBank:WP_001135930.1;Name=WP_001135930.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001135933.1;locus_tag=D5F88_RS08445;product=restriction endonuclease subunit S;protein_id=WP_001135930.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 21099 21977 . - . ID=gene-D5F88_RS08450;Name=D5F88_RS08450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08450;old_locus_tag=D5F88_08460 NZ_QYTI01000069.1 Protein Homology CDS 21099 21977 . - 0 ID=cds-WP_086163333.1;Parent=gene-D5F88_RS08450;Dbxref=GenBank:WP_086163333.1;Name=WP_086163333.1;Ontology_term=GO:0071586,GO:0004222,GO:0070007,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,glutamic-type endopeptidase activity|0070007||IEA;go_process=CAAX-box protein processing|0071586||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001209258.1;locus_tag=D5F88_RS08450;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_086163333.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 22083 24713 . - . ID=gene-D5F88_RS08455;Name=D5F88_RS08455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08455;old_locus_tag=D5F88_08465 NZ_QYTI01000069.1 Protein Homology CDS 22083 24713 . - 0 ID=cds-WP_016502867.1;Parent=gene-D5F88_RS08455;Dbxref=GenBank:WP_016502867.1;Name=WP_016502867.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000520608.1;locus_tag=D5F88_RS08455;product=ABC transporter permease;protein_id=WP_016502867.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 24725 25426 . - . ID=gene-D5F88_RS08460;Name=D5F88_RS08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08460;old_locus_tag=D5F88_08470 NZ_QYTI01000069.1 Protein Homology CDS 24725 25426 . - 0 ID=cds-WP_000120354.1;Parent=gene-D5F88_RS08460;Dbxref=GenBank:WP_000120354.1;Name=WP_000120354.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058545.1;locus_tag=D5F88_RS08460;product=ABC transporter ATP-binding protein;protein_id=WP_000120354.1;transl_table=11 NZ_QYTI01000069.1 RefSeq gene 25563 26650 . - . ID=gene-D5F88_RS08465;Name=D5F88_RS08465;end_range=26650,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08465;old_locus_tag=D5F88_08475;partial=true NZ_QYTI01000069.1 Protein Homology CDS 25563 26650 . - 2 ID=cds-WP_124773340.1;Parent=gene-D5F88_RS08465;Dbxref=GenBank:WP_124773340.1;Name=WP_124773340.1;Ontology_term=GO:0006265,GO:0003677,GO:0003916;end_range=26650,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646538.1;locus_tag=D5F88_RS08465;partial=true;product=DNA topoisomerase;protein_id=WP_124773340.1;transl_table=11 ##sequence-region NZ_QYTI01000007.1 1 36744 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000007.1 RefSeq region 1 36744 . + . ID=NZ_QYTI01000007.1:1..36744;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000007.1 RefSeq gene 1 328 . - . ID=gene-D5F88_RS01515;Name=D5F88_RS01515;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS01515;old_locus_tag=D5F88_01520;partial=true;start_range=.,1 NZ_QYTI01000007.1 cmsearch rRNA 1 328 . - . ID=rna-D5F88_RS01515;Parent=gene-D5F88_RS01515;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01515;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_QYTI01000007.1 cmsearch exon 1 328 . - . ID=exon-D5F88_RS01515-1;Parent=rna-D5F88_RS01515;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01515;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_QYTI01000007.1 RefSeq gene 749 1894 . + . ID=gene-D5F88_RS01520;Name=D5F88_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01520;old_locus_tag=D5F88_01525 NZ_QYTI01000007.1 Protein Homology CDS 749 1894 . + 0 ID=cds-WP_000529593.1;Parent=gene-D5F88_RS01520;Dbxref=GenBank:WP_000529593.1;Name=WP_000529593.1;Note=Members of the family are the ATP-binding subunit of ABC transporters for substrates such as betaine%2C L-proline or other amino acids%2C choline%2C carnitine%2C etc. The substrate specificity is best determined from the substrate-binding subunit%2C rather than this subunit%2C as it interacts with the permease subunit and not with substrate directly.;Ontology_term=GO:0015837,GO:0005524,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA;go_process=amine transport|0015837||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000529591.1;locus_tag=D5F88_RS01520;product=betaine/proline/choline family ABC transporter ATP-binding protein;protein_id=WP_000529593.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 1894 2529 . + . ID=gene-D5F88_RS01525;Name=D5F88_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01525;old_locus_tag=D5F88_01530 NZ_QYTI01000007.1 Protein Homology CDS 1894 2529 . + 0 ID=cds-WP_000247053.1;Parent=gene-D5F88_RS01525;Dbxref=GenBank:WP_000247053.1;Name=WP_000247053.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000247049.1;locus_tag=D5F88_RS01525;product=ABC transporter permease;protein_id=WP_000247053.1;transl_table=11 NZ_QYTI01000007.1 RefSeq pseudogene 2646 3458 . + . ID=gene-D5F88_RS01530;Name=D5F88_RS01530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS01530;old_locus_tag=D5F88_01535;partial=true;pseudo=true;start_range=.,2646 NZ_QYTI01000007.1 Protein Homology CDS 2646 3458 . + 0 ID=cds-D5F88_RS01530;Parent=gene-D5F88_RS01530;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003562594.1;locus_tag=D5F88_RS01530;partial=true;product=osmoprotectant ABC transporter substrate-binding protein;pseudo=true;start_range=.,2646;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 3459 4109 . + . ID=gene-D5F88_RS01535;Name=D5F88_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01535;old_locus_tag=D5F88_01540 NZ_QYTI01000007.1 Protein Homology CDS 3459 4109 . + 0 ID=cds-WP_000812157.1;Parent=gene-D5F88_RS01535;Dbxref=GenBank:WP_000812157.1;Name=WP_000812157.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767937.1;locus_tag=D5F88_RS01535;product=ABC transporter permease;protein_id=WP_000812157.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 4171 5352 . - . ID=gene-D5F88_RS01540;Name=D5F88_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01540;old_locus_tag=D5F88_01545 NZ_QYTI01000007.1 Protein Homology CDS 4171 5352 . - 0 ID=cds-WP_086163207.1;Parent=gene-D5F88_RS01540;Dbxref=GenBank:WP_086163207.1;Name=WP_086163207.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001024508.1;locus_tag=D5F88_RS01540;product=MFS transporter;protein_id=WP_086163207.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 5425 6285 . - . ID=gene-D5F88_RS01545;Name=D5F88_RS01545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01545;old_locus_tag=D5F88_01550 NZ_QYTI01000007.1 Protein Homology CDS 5425 6285 . - 0 ID=cds-WP_017646946.1;Parent=gene-D5F88_RS01545;Dbxref=GenBank:WP_017646946.1;Name=WP_017646946.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285452.1;locus_tag=D5F88_RS01545;product=helix-turn-helix domain-containing protein;protein_id=WP_017646946.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 7116 7397 . - . ID=gene-D5F88_RS01565;Name=D5F88_RS01565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01565;old_locus_tag=D5F88_01570 NZ_QYTI01000007.1 Protein Homology CDS 7116 7397 . - 0 ID=cds-WP_000052403.1;Parent=gene-D5F88_RS01565;Dbxref=GenBank:WP_000052403.1;Name=WP_000052403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000052406.1;locus_tag=D5F88_RS01565;product=hypothetical protein;protein_id=WP_000052403.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 7431 7817 . - . ID=gene-D5F88_RS01570;Name=D5F88_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01570;old_locus_tag=D5F88_01575 NZ_QYTI01000007.1 Protein Homology CDS 7431 7817 . - 0 ID=cds-WP_086163206.1;Parent=gene-D5F88_RS01570;Dbxref=GenBank:WP_086163206.1;Name=WP_086163206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000259065.1;locus_tag=D5F88_RS01570;product=hypothetical protein;protein_id=WP_086163206.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 7802 8482 . - . ID=gene-D5F88_RS01575;Name=D5F88_RS01575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01575;old_locus_tag=D5F88_01580 NZ_QYTI01000007.1 Protein Homology CDS 7802 8482 . - 0 ID=cds-WP_025194578.1;Parent=gene-D5F88_RS01575;Dbxref=GenBank:WP_025194578.1;Name=WP_025194578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001865565.1;locus_tag=D5F88_RS01575;product=hypothetical protein;protein_id=WP_025194578.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 9016 9423 . - . ID=gene-D5F88_RS01585;Name=D5F88_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01585;old_locus_tag=D5F88_01590 NZ_QYTI01000007.1 Protein Homology CDS 9016 9423 . - 0 ID=cds-WP_000749954.1;Parent=gene-D5F88_RS01585;Dbxref=GenBank:WP_000749954.1;Name=WP_000749954.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000749955.1;locus_tag=D5F88_RS01585;product=hypothetical protein;protein_id=WP_000749954.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 9525 9815 . - . ID=gene-D5F88_RS01590;Name=D5F88_RS01590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01590;old_locus_tag=D5F88_01595 NZ_QYTI01000007.1 Protein Homology CDS 9525 9815 . - 0 ID=cds-WP_017646948.1;Parent=gene-D5F88_RS01590;Dbxref=GenBank:WP_017646948.1;Name=WP_017646948.1;Ontology_term=GO:0005576;gbkey=CDS;go_component=extracellular region|0005576||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646948.1;locus_tag=D5F88_RS01590;product=WXG100 family type VII secretion target;protein_id=WP_017646948.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 10274 10666 . - . ID=gene-D5F88_RS01595;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=D5F88_RS01595;old_locus_tag=D5F88_01600 NZ_QYTI01000007.1 Protein Homology CDS 10274 10666 . - 0 ID=cds-WP_000035940.1;Parent=gene-D5F88_RS01595;Dbxref=GenBank:WP_000035940.1;Name=WP_000035940.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002942223.1;locus_tag=D5F88_RS01595;product=30S ribosomal protein S9;protein_id=WP_000035940.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 10687 11133 . - . ID=gene-D5F88_RS01600;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=D5F88_RS01600;old_locus_tag=D5F88_01605 NZ_QYTI01000007.1 Protein Homology CDS 10687 11133 . - 0 ID=cds-WP_001865567.1;Parent=gene-D5F88_RS01600;Dbxref=GenBank:WP_001865567.1;Name=WP_001865567.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplM;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003083327.1;locus_tag=D5F88_RS01600;product=50S ribosomal protein L13;protein_id=WP_001865567.1;transl_table=11 NZ_QYTI01000007.1 RefSeq pseudogene 11358 11477 . - . ID=gene-D5F88_RS01605;Name=D5F88_RS01605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS01605;old_locus_tag=D5F88_01610;partial=true;pseudo=true;start_range=.,11358 NZ_QYTI01000007.1 Protein Homology CDS 11358 11477 . - 0 ID=cds-D5F88_RS01605;Parent=gene-D5F88_RS01605;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002278327.1;locus_tag=D5F88_RS01605;partial=true;product=helix-turn-helix transcriptional regulator;pseudo=true;start_range=.,11358;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 12014 12874 . - . ID=gene-D5F88_RS01615;Name=D5F88_RS01615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01615;old_locus_tag=D5F88_01620 NZ_QYTI01000007.1 Protein Homology CDS 12014 12874 . - 0 ID=cds-WP_000143135.1;Parent=gene-D5F88_RS01615;Dbxref=GenBank:WP_000143135.1;Name=WP_000143135.1;Ontology_term=GO:0005504;gbkey=CDS;go_function=fatty acid binding|0005504||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771178.1;locus_tag=D5F88_RS01615;product=DegV family protein;protein_id=WP_000143135.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 12967 13485 . - . ID=gene-D5F88_RS01620;Name=D5F88_RS01620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01620;old_locus_tag=D5F88_01625 NZ_QYTI01000007.1 Protein Homology CDS 12967 13485 . - 0 ID=cds-WP_000716636.1;Parent=gene-D5F88_RS01620;Dbxref=GenBank:WP_000716636.1;Name=WP_000716636.1;Ontology_term=GO:0004540;gbkey=CDS;go_function=RNA nuclease activity|0004540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000716639.1;locus_tag=D5F88_RS01620;product=NYN domain-containing protein;protein_id=WP_000716636.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 13482 14237 . - . ID=gene-D5F88_RS01625;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=D5F88_RS01625;old_locus_tag=D5F88_01630 NZ_QYTI01000007.1 Protein Homology CDS 13482 14237 . - 0 ID=cds-WP_000178022.1;Parent=gene-D5F88_RS01625;Dbxref=GenBank:WP_000178022.1;Name=WP_000178022.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000178020.1;locus_tag=D5F88_RS01625;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_000178022.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 14340 14726 . - . ID=gene-D5F88_RS01630;Name=D5F88_RS01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01630;old_locus_tag=D5F88_01635 NZ_QYTI01000007.1 Protein Homology CDS 14340 14726 . - 0 ID=cds-WP_000568029.1;Parent=gene-D5F88_RS01630;Dbxref=GenBank:WP_000568029.1;Name=WP_000568029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000568031.1;locus_tag=D5F88_RS01630;product=Mini-ribonuclease 3;protein_id=WP_000568029.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 14719 16062 . - . ID=gene-D5F88_RS01635;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=D5F88_RS01635;old_locus_tag=D5F88_01640 NZ_QYTI01000007.1 Protein Homology CDS 14719 16062 . - 0 ID=cds-WP_000591129.1;Parent=gene-D5F88_RS01635;Dbxref=GenBank:WP_000591129.1;Name=WP_000591129.1;Ontology_term=GO:0006423,GO:0004817,GO:0005524,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA,ATP binding|0005524||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000591125.1;locus_tag=D5F88_RS01635;product=cysteine--tRNA ligase;protein_id=WP_000591129.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 16059 16241 . - . ID=gene-D5F88_RS01640;Name=D5F88_RS01640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01640;old_locus_tag=D5F88_01645 NZ_QYTI01000007.1 Protein Homology CDS 16059 16241 . - 0 ID=cds-WP_000656476.1;Parent=gene-D5F88_RS01640;Dbxref=GenBank:WP_000656476.1;Name=WP_000656476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000656477.1;locus_tag=D5F88_RS01640;product=lipoprotein;protein_id=WP_000656476.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 16251 16835 . - . ID=gene-D5F88_RS01645;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=D5F88_RS01645;old_locus_tag=D5F88_01650 NZ_QYTI01000007.1 Protein Homology CDS 16251 16835 . - 0 ID=cds-WP_000539954.1;Parent=gene-D5F88_RS01645;Dbxref=GenBank:WP_000539954.1;Name=WP_000539954.1;Ontology_term=GO:0006535,GO:0009001,GO:0005737;gbkey=CDS;gene=cysE;go_component=cytoplasm|0005737||IEA;go_function=serine O-acetyltransferase activity|0009001||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000539954.1;locus_tag=D5F88_RS01645;product=serine O-acetyltransferase;protein_id=WP_000539954.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 16844 17596 . - . ID=gene-D5F88_RS01650;Name=D5F88_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01650;old_locus_tag=D5F88_01655 NZ_QYTI01000007.1 Protein Homology CDS 16844 17596 . - 0 ID=cds-WP_000204780.1;Parent=gene-D5F88_RS01650;Dbxref=GenBank:WP_000204780.1;Name=WP_000204780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480252.1;locus_tag=D5F88_RS01650;product=SseB family protein;protein_id=WP_000204780.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 17598 19727 . - . ID=gene-D5F88_RS01655;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=D5F88_RS01655;old_locus_tag=D5F88_01660 NZ_QYTI01000007.1 Protein Homology CDS 17598 19727 . - 0 ID=cds-WP_086163204.1;Parent=gene-D5F88_RS01655;Dbxref=GenBank:WP_086163204.1;Name=WP_086163204.1;Ontology_term=GO:0006402,GO:0003723,GO:0004654;gbkey=CDS;gene=pnp;go_function=RNA binding|0003723||IEA,polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480251.1;locus_tag=D5F88_RS01655;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_086163204.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 20108 20377 . - . ID=gene-D5F88_RS01660;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=D5F88_RS01660;old_locus_tag=D5F88_01665 NZ_QYTI01000007.1 Protein Homology CDS 20108 20377 . - 0 ID=cds-WP_001018249.1;Parent=gene-D5F88_RS01660;Dbxref=GenBank:WP_001018249.1;Name=WP_001018249.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001018251.1;locus_tag=D5F88_RS01660;product=30S ribosomal protein S15;protein_id=WP_001018249.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 20465 21724 . - . ID=gene-D5F88_RS01665;Name=D5F88_RS01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01665;old_locus_tag=D5F88_01670 NZ_QYTI01000007.1 Protein Homology CDS 20465 21724 . - 0 ID=cds-WP_016502453.1;Parent=gene-D5F88_RS01665;Dbxref=GenBank:WP_016502453.1;Name=WP_016502453.1;Ontology_term=GO:0000166,GO:0016491;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001203075.1;locus_tag=D5F88_RS01665;product=ferredoxin reductase family protein;protein_id=WP_016502453.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 21833 22762 . - . ID=gene-D5F88_RS01670;Name=D5F88_RS01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01670;old_locus_tag=D5F88_01675 NZ_QYTI01000007.1 Protein Homology CDS 21833 22762 . - 0 ID=cds-WP_016502452.1;Parent=gene-D5F88_RS01670;Dbxref=GenBank:WP_016502452.1;Name=WP_016502452.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001203818.1;locus_tag=D5F88_RS01670;product=transketolase family protein;protein_id=WP_016502452.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 22759 23616 . - . ID=gene-D5F88_RS01675;Name=D5F88_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01675;old_locus_tag=D5F88_01680 NZ_QYTI01000007.1 Protein Homology CDS 22759 23616 . - 0 ID=cds-WP_016502451.1;Parent=gene-D5F88_RS01675;Dbxref=GenBank:WP_016502451.1;Name=WP_016502451.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648167.1;locus_tag=D5F88_RS01675;product=transketolase;protein_id=WP_016502451.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 23619 24974 . - . ID=gene-D5F88_RS01680;Name=D5F88_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01680;old_locus_tag=D5F88_01685 NZ_QYTI01000007.1 Protein Homology CDS 23619 24974 . - 0 ID=cds-WP_124773163.1;Parent=gene-D5F88_RS01680;Dbxref=GenBank:WP_124773163.1;Name=WP_124773163.1;Ontology_term=GO:0009401;gbkey=CDS;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646152.1;locus_tag=D5F88_RS01680;product=PTS ascorbate transporter subunit IIC;protein_id=WP_124773163.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 24987 25271 . - . ID=gene-D5F88_RS01685;Name=D5F88_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01685;old_locus_tag=D5F88_01690 NZ_QYTI01000007.1 Protein Homology CDS 24987 25271 . - 0 ID=cds-WP_000944235.1;Parent=gene-D5F88_RS01685;Dbxref=GenBank:WP_000944235.1;Name=WP_000944235.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008089859.1;locus_tag=D5F88_RS01685;product=PTS sugar transporter subunit IIB;protein_id=WP_000944235.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 25274 27310 . - . ID=gene-D5F88_RS01690;Name=D5F88_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01690;old_locus_tag=D5F88_01695 NZ_QYTI01000007.1 Protein Homology CDS 25274 27310 . - 0 ID=cds-WP_016502449.1;Parent=gene-D5F88_RS01690;Dbxref=GenBank:WP_016502449.1;Name=WP_016502449.1;Ontology_term=GO:0006355,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000228187.1;locus_tag=D5F88_RS01690;product=BglG family transcription antiterminator;protein_id=WP_016502449.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 27526 29151 . - . ID=gene-D5F88_RS01695;Name=treC;gbkey=Gene;gene=treC;gene_biotype=protein_coding;locus_tag=D5F88_RS01695;old_locus_tag=D5F88_01700 NZ_QYTI01000007.1 Protein Homology CDS 27526 29151 . - 0 ID=cds-WP_086163203.1;Parent=gene-D5F88_RS01695;Dbxref=GenBank:WP_086163203.1;Name=WP_086163203.1;Ontology_term=GO:0005991,GO:0008788,GO:0005737;gbkey=CDS;gene=treC;go_component=cytoplasm|0005737||IEA;go_function=alpha%2Calpha-phosphotrehalase activity|0008788||IEA;go_process=trehalose metabolic process|0005991||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000151019.1;locus_tag=D5F88_RS01695;product=alpha%2Calpha-phosphotrehalase;protein_id=WP_086163203.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 29373 31403 . - . ID=gene-D5F88_RS01700;Name=treP;gbkey=Gene;gene=treP;gene_biotype=protein_coding;locus_tag=D5F88_RS01700;old_locus_tag=D5F88_01705 NZ_QYTI01000007.1 Protein Homology CDS 29373 31403 . - 0 ID=cds-WP_016502447.1;Parent=gene-D5F88_RS01700;Dbxref=GenBank:WP_016502447.1;Name=WP_016502447.1;Ontology_term=GO:0009401,GO:0015771,GO:0008982,GO:0015574,GO:0016020;gbkey=CDS;gene=treP;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,trehalose transmembrane transporter activity|0015574||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,trehalose transport|0015771||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480244.1;locus_tag=D5F88_RS01700;product=PTS system trehalose-specific EIIBC component;protein_id=WP_016502447.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 31685 32311 . - . ID=gene-D5F88_RS01705;Name=D5F88_RS01705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01705;old_locus_tag=D5F88_01710 NZ_QYTI01000007.1 Protein Homology CDS 31685 32311 . - 0 ID=cds-WP_016502446.1;Parent=gene-D5F88_RS01705;Dbxref=GenBank:WP_016502446.1;Name=WP_016502446.1;Ontology_term=GO:0005524,GO:0016887,GO:0022857,GO:0042626,GO:0140359,GO:0043190;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,transmembrane transporter activity|0022857||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001932323.1;locus_tag=D5F88_RS01705;product=ABC transporter ATP-binding protein;protein_id=WP_016502446.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 32295 33098 . - . ID=gene-D5F88_RS01710;Name=D5F88_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01710;old_locus_tag=D5F88_01715 NZ_QYTI01000007.1 Protein Homology CDS 32295 33098 . - 0 ID=cds-WP_000140980.1;Parent=gene-D5F88_RS01710;Dbxref=GenBank:WP_000140980.1;Name=WP_000140980.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000140979.1;locus_tag=D5F88_RS01710;product=ATP-binding cassette domain-containing protein;protein_id=WP_000140980.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 33110 33931 . - . ID=gene-D5F88_RS01715;Name=D5F88_RS01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01715;old_locus_tag=D5F88_01720 NZ_QYTI01000007.1 Protein Homology CDS 33110 33931 . - 0 ID=cds-WP_086163202.1;Parent=gene-D5F88_RS01715;Dbxref=GenBank:WP_086163202.1;Name=WP_086163202.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631767.1;locus_tag=D5F88_RS01715;product=ABC transporter permease;protein_id=WP_086163202.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 33928 34905 . - . ID=gene-D5F88_RS01720;Name=D5F88_RS01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01720;old_locus_tag=D5F88_01725 NZ_QYTI01000007.1 Protein Homology CDS 33928 34905 . - 0 ID=cds-WP_000680645.1;Parent=gene-D5F88_RS01720;Dbxref=GenBank:WP_000680645.1;Name=WP_000680645.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000680642.1;locus_tag=D5F88_RS01720;product=ABC transporter permease;protein_id=WP_000680645.1;transl_table=11 NZ_QYTI01000007.1 RefSeq gene 35018 36646 . - . ID=gene-D5F88_RS01725;Name=D5F88_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01725;old_locus_tag=D5F88_01730 NZ_QYTI01000007.1 Protein Homology CDS 35018 36646 . - 0 ID=cds-WP_000170504.1;Parent=gene-D5F88_RS01725;Dbxref=GenBank:WP_000170504.1;Name=WP_000170504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771899.1;locus_tag=D5F88_RS01725;product=ABC transporter substrate-binding protein;protein_id=WP_000170504.1;transl_table=11 ##sequence-region NZ_QYTI01000070.1 1 50114 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000070.1 RefSeq region 1 50114 . + . ID=NZ_QYTI01000070.1:1..50114;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000070.1 RefSeq pseudogene 1 561 . - . ID=gene-D5F88_RS08470;Name=D5F88_RS08470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS08470;old_locus_tag=D5F88_08480;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000070.1 Protein Homology CDS 1 561 . - 0 ID=cds-D5F88_RS08470;Parent=gene-D5F88_RS08470;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001226236.1;locus_tag=D5F88_RS08470;partial=true;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 688 1359 . - . ID=gene-D5F88_RS08475;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=D5F88_RS08475;old_locus_tag=D5F88_08485 NZ_QYTI01000070.1 Protein Homology CDS 688 1359 . - 0 ID=cds-WP_000655658.1;Parent=gene-D5F88_RS08475;Dbxref=GenBank:WP_000655658.1;Name=WP_000655658.1;Ontology_term=GO:0009228,GO:0004789;gbkey=CDS;gene=thiE;go_function=thiamine-phosphate diphosphorylase activity|0004789||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001904425.1;locus_tag=D5F88_RS08475;product=thiamine phosphate synthase;protein_id=WP_000655658.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 1373 2143 . - . ID=gene-D5F88_RS08480;Name=thiM;gbkey=Gene;gene=thiM;gene_biotype=protein_coding;locus_tag=D5F88_RS08480;old_locus_tag=D5F88_08490 NZ_QYTI01000070.1 Protein Homology CDS 1373 2143 . - 0 ID=cds-WP_016502814.1;Parent=gene-D5F88_RS08480;Dbxref=GenBank:WP_016502814.1;Name=WP_016502814.1;Ontology_term=GO:0009228,GO:0004417;gbkey=CDS;gene=thiM;go_function=hydroxyethylthiazole kinase activity|0004417||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502814.1;locus_tag=D5F88_RS08480;product=hydroxyethylthiazole kinase;protein_id=WP_016502814.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 2145 2942 . - . ID=gene-D5F88_RS08485;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=D5F88_RS08485;old_locus_tag=D5F88_08495 NZ_QYTI01000070.1 Protein Homology CDS 2145 2942 . - 0 ID=cds-WP_000221577.1;Parent=gene-D5F88_RS08485;Dbxref=GenBank:WP_000221577.1;Name=WP_000221577.1;Ontology_term=GO:0009228,GO:0008902,GO:0008972;gbkey=CDS;gene=thiD;go_function=hydroxymethylpyrimidine kinase activity|0008902||IEA,phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000221574.1;locus_tag=D5F88_RS08485;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=WP_000221577.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 2944 3624 . - . ID=gene-D5F88_RS08490;Name=tenA;gbkey=Gene;gene=tenA;gene_biotype=protein_coding;locus_tag=D5F88_RS08490;old_locus_tag=D5F88_08500 NZ_QYTI01000070.1 Protein Homology CDS 2944 3624 . - 0 ID=cds-WP_016502813.1;Parent=gene-D5F88_RS08490;Dbxref=GenBank:WP_016502813.1;Name=WP_016502813.1;Ontology_term=GO:0006772,GO:0050334;gbkey=CDS;gene=tenA;go_function=thiaminase activity|0050334||IEA;go_process=thiamine metabolic process|0006772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502813.1;locus_tag=D5F88_RS08490;product=thiaminase II;protein_id=WP_016502813.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 3708 4376 . - . ID=gene-D5F88_RS08495;Name=D5F88_RS08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08495;old_locus_tag=D5F88_08505 NZ_QYTI01000070.1 Protein Homology CDS 3708 4376 . - 0 ID=cds-WP_000482627.1;Parent=gene-D5F88_RS08495;Dbxref=GenBank:WP_000482627.1;Name=WP_000482627.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480683.1;locus_tag=D5F88_RS08495;product=energy-coupling factor transporter transmembrane component T family protein;protein_id=WP_000482627.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 4364 5650 . - . ID=gene-D5F88_RS08500;Name=D5F88_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08500;old_locus_tag=D5F88_08510 NZ_QYTI01000070.1 Protein Homology CDS 4364 5650 . - 0 ID=cds-WP_000953604.1;Parent=gene-D5F88_RS08500;Dbxref=GenBank:WP_000953604.1;Name=WP_000953604.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000953609.1;locus_tag=D5F88_RS08500;product=ATP-binding cassette domain-containing protein;protein_id=WP_000953604.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 5654 6208 . - . ID=gene-D5F88_RS08505;Name=D5F88_RS08505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08505;old_locus_tag=D5F88_08515 NZ_QYTI01000070.1 Protein Homology CDS 5654 6208 . - 0 ID=cds-WP_000766004.1;Parent=gene-D5F88_RS08505;Dbxref=GenBank:WP_000766004.1;Name=WP_000766004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649536.1;locus_tag=D5F88_RS08505;product=ECF transporter S component;protein_id=WP_000766004.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 6205 6771 . - . ID=gene-D5F88_RS08510;Name=thiW;gbkey=Gene;gene=thiW;gene_biotype=protein_coding;locus_tag=D5F88_RS08510;old_locus_tag=D5F88_08520 NZ_QYTI01000070.1 Protein Homology CDS 6205 6771 . - 0 ID=cds-WP_000181409.1;Parent=gene-D5F88_RS08510;Dbxref=GenBank:WP_000181409.1;Name=WP_000181409.1;Ontology_term=GO:0006810,GO:0009228,GO:0005215;gbkey=CDS;gene=thiW;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA,thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000181415.1;locus_tag=D5F88_RS08510;product=energy coupling factor transporter S component ThiW;protein_id=WP_000181409.1;transl_table=11 NZ_QYTI01000070.1 cmsearch riboswitch 6927 7016 . - . ID=id-NZ_QYTI01000070.1:6927..7016;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_QYTI01000070.1 RefSeq gene 7167 7712 . - . ID=gene-D5F88_RS08515;Name=D5F88_RS08515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08515;old_locus_tag=D5F88_08525 NZ_QYTI01000070.1 Protein Homology CDS 7167 7712 . - 0 ID=cds-WP_016502812.1;Parent=gene-D5F88_RS08515;Dbxref=GenBank:WP_016502812.1;Name=WP_016502812.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000724544.1;locus_tag=D5F88_RS08515;product=GA module-containing protein;protein_id=WP_016502812.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 7779 10202 . - . ID=gene-D5F88_RS11890;Name=D5F88_RS11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11890;old_locus_tag=D5F88_08530 NZ_QYTI01000070.1 Protein Homology CDS 7779 10202 . - 0 ID=cds-WP_016502811.1;Parent=gene-D5F88_RS11890;Dbxref=GenBank:WP_016502811.1;Name=WP_016502811.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF020344.6;locus_tag=D5F88_RS11890;product=coagulase domain-containing protein;protein_id=WP_016502811.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 10461 10736 . - . ID=gene-D5F88_RS08525;Name=D5F88_RS08525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08525;old_locus_tag=D5F88_08535 NZ_QYTI01000070.1 Protein Homology CDS 10461 10736 . - 0 ID=cds-WP_000880724.1;Parent=gene-D5F88_RS08525;Dbxref=GenBank:WP_000880724.1;Name=WP_000880724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000880717.1;locus_tag=D5F88_RS08525;product=hypothetical protein;protein_id=WP_000880724.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 10723 11919 . - . ID=gene-D5F88_RS08530;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=D5F88_RS08530;old_locus_tag=D5F88_08540 NZ_QYTI01000070.1 Protein Homology CDS 10723 11919 . - 0 ID=cds-WP_000003964.1;Parent=gene-D5F88_RS08530;Dbxref=GenBank:WP_000003964.1;Name=WP_000003964.1;Ontology_term=GO:0006556,GO:0004478,GO:0005524;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA,ATP binding|0005524||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631929.1;locus_tag=D5F88_RS08530;product=methionine adenosyltransferase;protein_id=WP_000003964.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 12104 13039 . + . ID=gene-D5F88_RS08535;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=D5F88_RS08535;old_locus_tag=D5F88_08545 NZ_QYTI01000070.1 Protein Homology CDS 12104 13039 . + 0 ID=cds-WP_041165675.1;Parent=gene-D5F88_RS08535;Dbxref=GenBank:WP_041165675.1;Name=WP_041165675.1;gbkey=CDS;gene=birA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650903.1;locus_tag=D5F88_RS08535;product=bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;protein_id=WP_041165675.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 13020 13214 . - . ID=gene-D5F88_RS08540;Name=D5F88_RS08540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08540;old_locus_tag=D5F88_08550 NZ_QYTI01000070.1 Protein Homology CDS 13020 13214 . - 0 ID=cds-WP_000166926.1;Parent=gene-D5F88_RS08540;Dbxref=GenBank:WP_000166926.1;Name=WP_000166926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631927.1;locus_tag=D5F88_RS08540;product=DUF3272 domain-containing protein;protein_id=WP_000166926.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 13303 14967 . - . ID=gene-D5F88_RS08545;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=D5F88_RS08545;old_locus_tag=D5F88_08555 NZ_QYTI01000070.1 Protein Homology CDS 13303 14967 . - 0 ID=cds-WP_016502810.1;Parent=gene-D5F88_RS08545;Dbxref=GenBank:WP_016502810.1;Name=WP_016502810.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480673.1;locus_tag=D5F88_RS08545;product=DNA polymerase III subunit gamma/tau;protein_id=WP_016502810.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 14967 15464 . - . ID=gene-D5F88_RS08550;Name=D5F88_RS08550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08550;old_locus_tag=D5F88_08560 NZ_QYTI01000070.1 Protein Homology CDS 14967 15464 . - 0 ID=cds-WP_016502809.1;Parent=gene-D5F88_RS08550;Dbxref=GenBank:WP_016502809.1;Name=WP_016502809.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502809.1;locus_tag=D5F88_RS08550;product=GAF domain-containing protein;protein_id=WP_016502809.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 15550 16179 . - . ID=gene-D5F88_RS08555;Name=udk;gbkey=Gene;gene=udk;gene_biotype=protein_coding;locus_tag=D5F88_RS08555;old_locus_tag=D5F88_08565 NZ_QYTI01000070.1 Protein Homology CDS 15550 16179 . - 0 ID=cds-WP_001227823.1;Parent=gene-D5F88_RS08555;Dbxref=GenBank:WP_001227823.1;Name=WP_001227823.1;Ontology_term=GO:0004849;gbkey=CDS;gene=udk;go_function=uridine kinase activity|0004849||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001227823.1;locus_tag=D5F88_RS08555;product=uridine kinase;protein_id=WP_001227823.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 16324 17406 . + . ID=gene-D5F88_RS08560;Name=D5F88_RS08560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08560;old_locus_tag=D5F88_08570 NZ_QYTI01000070.1 Protein Homology CDS 16324 17406 . + 0 ID=cds-WP_000628858.1;Parent=gene-D5F88_RS08560;Dbxref=GenBank:WP_000628858.1;Name=WP_000628858.1;Ontology_term=GO:0003676,GO:0005524,GO:0016887;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058504.1;locus_tag=D5F88_RS08560;product=DEAD/DEAH box helicase;protein_id=WP_000628858.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 17437 18690 . - . ID=gene-D5F88_RS08565;Name=D5F88_RS08565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08565;old_locus_tag=D5F88_08575 NZ_QYTI01000070.1 Protein Homology CDS 17437 18690 . - 0 ID=cds-WP_000733376.1;Parent=gene-D5F88_RS08565;Dbxref=GenBank:WP_000733376.1;Name=WP_000733376.1;Ontology_term=GO:0005975,GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000733367.1;locus_tag=D5F88_RS08565;product=polysaccharide deacetylase family protein;protein_id=WP_000733376.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 18829 20256 . - . ID=gene-D5F88_RS08570;Name=D5F88_RS08570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08570;old_locus_tag=D5F88_08580 NZ_QYTI01000070.1 Protein Homology CDS 18829 20256 . - 0 ID=cds-WP_000159916.1;Parent=gene-D5F88_RS08570;Dbxref=GenBank:WP_000159916.1;Name=WP_000159916.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646385.1;locus_tag=D5F88_RS08570;product=NADP-dependent glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_000159916.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 20406 22139 . - . ID=gene-D5F88_RS08575;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=D5F88_RS08575;old_locus_tag=D5F88_08585 NZ_QYTI01000070.1 Protein Homology CDS 20406 22139 . - 0 ID=cds-WP_000138153.1;Parent=gene-D5F88_RS08575;Dbxref=GenBank:WP_000138153.1;Name=WP_000138153.1;Ontology_term=GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014294264.1;locus_tag=D5F88_RS08575;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_000138153.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 22144 22407 . - . ID=gene-D5F88_RS08580;Name=D5F88_RS08580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08580;old_locus_tag=D5F88_08590 NZ_QYTI01000070.1 Protein Homology CDS 22144 22407 . - 0 ID=cds-WP_000146945.1;Parent=gene-D5F88_RS08580;Dbxref=GenBank:WP_000146945.1;Name=WP_000146945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019775469.1;locus_tag=D5F88_RS08580;product=phosphocarrier protein HPr;protein_id=WP_000146945.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 22789 23013 . + . ID=gene-D5F88_RS08585;Name=D5F88_RS08585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08585;old_locus_tag=D5F88_08595 NZ_QYTI01000070.1 Protein Homology CDS 22789 23013 . + 0 ID=cds-WP_000719060.1;Parent=gene-D5F88_RS08585;Dbxref=GenBank:WP_000719060.1;Name=WP_000719060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000719060.1;locus_tag=D5F88_RS08585;product=redoxin NrdH;protein_id=WP_000719060.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 23091 25250 . + . ID=gene-D5F88_RS08590;Name=nrdE;gbkey=Gene;gene=nrdE;gene_biotype=protein_coding;locus_tag=D5F88_RS08590;old_locus_tag=D5F88_08600 NZ_QYTI01000070.1 Protein Homology CDS 23091 25250 . + 0 ID=cds-WP_124773342.1;Parent=gene-D5F88_RS08590;Dbxref=GenBank:WP_124773342.1;Name=WP_124773342.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdE;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000053857.1;locus_tag=D5F88_RS08590;product=class 1b ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_124773342.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 25453 26412 . + . ID=gene-D5F88_RS08595;Name=nrdF;gbkey=Gene;gene=nrdF;gene_biotype=protein_coding;locus_tag=D5F88_RS08595;old_locus_tag=D5F88_08605 NZ_QYTI01000070.1 Protein Homology CDS 25453 26412 . + 0 ID=cds-WP_000214845.1;Parent=gene-D5F88_RS08595;Dbxref=GenBank:WP_000214845.1;Name=WP_000214845.1;Ontology_term=GO:0009263,GO:0004748,GO:0005971;gbkey=CDS;gene=nrdF;go_component=ribonucleoside-diphosphate reductase complex|0005971||IEA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646384.1;locus_tag=D5F88_RS08595;product=class 1b ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_000214845.1;transl_table=11 NZ_QYTI01000070.1 cmsearch riboswitch 26497 26595 . + . ID=id-NZ_QYTI01000070.1:26497..26595;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_QYTI01000070.1 RefSeq gene 26653 27216 . + . ID=gene-D5F88_RS08600;Name=thiT;gbkey=Gene;gene=thiT;gene_biotype=protein_coding;locus_tag=D5F88_RS08600;old_locus_tag=D5F88_08610 NZ_QYTI01000070.1 Protein Homology CDS 26653 27216 . + 0 ID=cds-WP_000042136.1;Parent=gene-D5F88_RS08600;Dbxref=GenBank:WP_000042136.1;Name=WP_000042136.1;Ontology_term=GO:0015888,GO:0015234;gbkey=CDS;gene=thiT;go_function=thiamine transmembrane transporter activity|0015234||IEA;go_process=thiamine transport|0015888||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000042138.1;locus_tag=D5F88_RS08600;product=energy-coupled thiamine transporter ThiT;protein_id=WP_000042136.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 27301 28059 . - . ID=gene-D5F88_RS08605;Name=D5F88_RS08605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08605;old_locus_tag=D5F88_08615 NZ_QYTI01000070.1 Protein Homology CDS 27301 28059 . - 0 ID=cds-WP_016502807.1;Parent=gene-D5F88_RS08605;Dbxref=GenBank:WP_016502807.1;Name=WP_016502807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480667.1;locus_tag=D5F88_RS08605;product=DUF3169 family protein;protein_id=WP_016502807.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 28062 28277 . - . ID=gene-D5F88_RS08610;Name=D5F88_RS08610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08610;old_locus_tag=D5F88_08620 NZ_QYTI01000070.1 Protein Homology CDS 28062 28277 . - 0 ID=cds-WP_000522958.1;Parent=gene-D5F88_RS08610;Dbxref=GenBank:WP_000522958.1;Name=WP_000522958.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000522956.1;locus_tag=D5F88_RS08610;product=helix-turn-helix transcriptional regulator;protein_id=WP_000522958.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 28322 28615 . - . ID=gene-D5F88_RS08615;Name=D5F88_RS08615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08615;old_locus_tag=D5F88_08625 NZ_QYTI01000070.1 Protein Homology CDS 28322 28615 . - 0 ID=cds-WP_180383428.1;Parent=gene-D5F88_RS08615;Dbxref=GenBank:WP_180383428.1;Name=WP_180383428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000245557.1;locus_tag=D5F88_RS08615;product=hypothetical protein;protein_id=WP_180383428.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 29091 29909 . - . ID=gene-D5F88_RS08620;Name=D5F88_RS08620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08620;old_locus_tag=D5F88_08630 NZ_QYTI01000070.1 Protein Homology CDS 29091 29909 . - 0 ID=cds-WP_001050374.1;Parent=gene-D5F88_RS08620;Dbxref=GenBank:WP_001050374.1;Name=WP_001050374.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001050370.1;locus_tag=D5F88_RS08620;product=glycosyltransferase family 8 protein;protein_id=WP_001050374.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 29997 30713 . - . ID=gene-D5F88_RS08625;Name=D5F88_RS08625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08625;old_locus_tag=D5F88_08635 NZ_QYTI01000070.1 Protein Homology CDS 29997 30713 . - 0 ID=cds-WP_000232924.1;Parent=gene-D5F88_RS08625;Dbxref=GenBank:WP_000232924.1;Name=WP_000232924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000232920.1;locus_tag=D5F88_RS08625;product=DUF554 domain-containing protein;protein_id=WP_000232924.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 30795 33413 . - . ID=gene-D5F88_RS08630;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=D5F88_RS08630;old_locus_tag=D5F88_08640 NZ_QYTI01000070.1 Protein Homology CDS 30795 33413 . - 0 ID=cds-WP_016502804.1;Parent=gene-D5F88_RS08630;Dbxref=GenBank:WP_016502804.1;Name=WP_016502804.1;Ontology_term=GO:0006419,GO:0000166,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000661542.1;locus_tag=D5F88_RS08630;product=alanine--tRNA ligase;protein_id=WP_016502804.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 33429 33914 . - . ID=gene-D5F88_RS08635;Name=D5F88_RS08635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08635;old_locus_tag=D5F88_08645 NZ_QYTI01000070.1 Protein Homology CDS 33429 33914 . - 0 ID=cds-WP_000190196.1;Parent=gene-D5F88_RS08635;Dbxref=GenBank:WP_000190196.1;Name=WP_000190196.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012767250.1;locus_tag=D5F88_RS08635;product=LURP-one-related/scramblase family protein;protein_id=WP_000190196.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 34156 35085 . - . ID=gene-D5F88_RS08640;Name=prsA;gbkey=Gene;gene=prsA;gene_biotype=protein_coding;locus_tag=D5F88_RS08640;old_locus_tag=D5F88_08650 NZ_QYTI01000070.1 Protein Homology CDS 34156 35085 . - 0 ID=cds-WP_000857817.1;Parent=gene-D5F88_RS08640;Dbxref=GenBank:WP_000857817.1;Name=WP_000857817.1;gbkey=CDS;gene=prsA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000857824.1;locus_tag=D5F88_RS08640;product=peptidylprolyl isomerase PrsA;protein_id=WP_000857817.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 35146 35853 . - . ID=gene-D5F88_RS08645;Name=D5F88_RS08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08645;old_locus_tag=D5F88_08655 NZ_QYTI01000070.1 Protein Homology CDS 35146 35853 . - 0 ID=cds-WP_000250853.1;Parent=gene-D5F88_RS08645;Dbxref=GenBank:WP_000250853.1;Name=WP_000250853.1;Ontology_term=GO:0032259,GO:0008168,GO:0008171,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,O-methyltransferase activity|0008171||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650688.1;locus_tag=D5F88_RS08645;product=O-methyltransferase;protein_id=WP_000250853.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 35927 36553 . - . ID=gene-D5F88_RS08650;Name=D5F88_RS08650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08650;old_locus_tag=D5F88_08660 NZ_QYTI01000070.1 Protein Homology CDS 35927 36553 . - 0 ID=cds-WP_000736936.1;Parent=gene-D5F88_RS08650;Dbxref=GenBank:WP_000736936.1;Name=WP_000736936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771772.1;locus_tag=D5F88_RS08650;product=HAD hydrolase-like protein;protein_id=WP_000736936.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 36748 38553 . - . ID=gene-D5F88_RS08655;Name=pepF;gbkey=Gene;gene=pepF;gene_biotype=protein_coding;locus_tag=D5F88_RS08655;old_locus_tag=D5F88_08665 NZ_QYTI01000070.1 Protein Homology CDS 36748 38553 . - 0 ID=cds-WP_016502803.1;Parent=gene-D5F88_RS08655;Dbxref=GenBank:WP_016502803.1;Name=WP_016502803.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=pepF;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001282903.1;locus_tag=D5F88_RS08655;product=oligoendopeptidase F;protein_id=WP_016502803.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 38569 39516 . - . ID=gene-D5F88_RS08660;Name=D5F88_RS08660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08660;old_locus_tag=D5F88_08670 NZ_QYTI01000070.1 Protein Homology CDS 38569 39516 . - 0 ID=cds-WP_016502802.1;Parent=gene-D5F88_RS08660;Dbxref=GenBank:WP_016502802.1;Name=WP_016502802.1;Ontology_term=GO:0030420;gbkey=CDS;go_process=establishment of competence for transformation|0030420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000903651.1;locus_tag=D5F88_RS08660;product=competence protein CoiA;protein_id=WP_016502802.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 39568 40719 . - . ID=gene-D5F88_RS08665;Name=D5F88_RS08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08665;old_locus_tag=D5F88_08675 NZ_QYTI01000070.1 Protein Homology CDS 39568 40719 . - 0 ID=cds-WP_016502801.1;Parent=gene-D5F88_RS08665;Dbxref=GenBank:WP_016502801.1;Name=WP_016502801.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771524.1;locus_tag=D5F88_RS08665;product=MFS transporter;protein_id=WP_016502801.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 40792 41511 . - . ID=gene-D5F88_RS08675;Name=D5F88_RS08675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08675;old_locus_tag=D5F88_08685 NZ_QYTI01000070.1 Protein Homology CDS 40792 41511 . - 0 ID=cds-WP_001234960.1;Parent=gene-D5F88_RS08675;Dbxref=GenBank:WP_001234960.1;Name=WP_001234960.1;Ontology_term=GO:0009451,GO:0003723,GO:0009982,GO:0140098;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA,catalytic activity%2C acting on RNA|0140098||IEA;go_process=RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001234955.1;locus_tag=D5F88_RS08675;product=16S rRNA pseudouridine(516) synthase;protein_id=WP_001234960.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 41607 42563 . + . ID=gene-D5F88_RS08680;Name=D5F88_RS08680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08680;old_locus_tag=D5F88_08690 NZ_QYTI01000070.1 Protein Homology CDS 41607 42563 . + 0 ID=cds-WP_000523783.1;Parent=gene-D5F88_RS08680;Dbxref=GenBank:WP_000523783.1;Name=WP_000523783.1;Ontology_term=GO:0004364,GO:0016491;gbkey=CDS;go_function=glutathione transferase activity|0004364||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000523788.1;locus_tag=D5F88_RS08680;product=glutathione S-transferase family protein;protein_id=WP_000523783.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 42635 43336 . - . ID=gene-D5F88_RS08685;Name=D5F88_RS08685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08685;old_locus_tag=D5F88_08695 NZ_QYTI01000070.1 Protein Homology CDS 42635 43336 . - 0 ID=cds-WP_001263957.1;Parent=gene-D5F88_RS08685;Dbxref=GenBank:WP_001263957.1;Name=WP_001263957.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001263956.1;locus_tag=D5F88_RS08685;product=glucosamine-6-phosphate deaminase;protein_id=WP_001263957.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 43486 44166 . - . ID=gene-D5F88_RS08690;Name=D5F88_RS08690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08690;old_locus_tag=D5F88_08700 NZ_QYTI01000070.1 Protein Homology CDS 43486 44166 . - 0 ID=cds-WP_000656582.1;Parent=gene-D5F88_RS08690;Dbxref=GenBank:WP_000656582.1;Name=WP_000656582.1;Ontology_term=GO:0046873;gbkey=CDS;go_function=metal ion transmembrane transporter activity|0046873||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000656576.1;locus_tag=D5F88_RS08690;product=VIT1/CCC1 transporter family protein;protein_id=WP_000656582.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 44319 45347 . + . ID=gene-D5F88_RS08695;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=D5F88_RS08695;old_locus_tag=D5F88_08705 NZ_QYTI01000070.1 Protein Homology CDS 44319 45347 . + 0 ID=cds-WP_016480659.1;Parent=gene-D5F88_RS08695;Dbxref=GenBank:WP_016480659.1;Name=WP_016480659.1;Ontology_term=GO:0016740,GO:0016853;gbkey=CDS;gene=queA;go_function=transferase activity|0016740||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646165.1;locus_tag=D5F88_RS08695;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=WP_016480659.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 45434 45871 . + . ID=gene-D5F88_RS08700;Name=D5F88_RS08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08700;old_locus_tag=D5F88_08710 NZ_QYTI01000070.1 Protein Homology CDS 45434 45871 . + 0 ID=cds-WP_011074720.1;Parent=gene-D5F88_RS08700;Dbxref=GenBank:WP_011074720.1;Name=WP_011074720.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502799.1;locus_tag=D5F88_RS08700;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_011074720.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 45926 46990 . - . ID=gene-D5F88_RS08705;Name=D5F88_RS08705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08705;old_locus_tag=D5F88_08715 NZ_QYTI01000070.1 Protein Homology CDS 45926 46990 . - 0 ID=cds-WP_000814871.1;Parent=gene-D5F88_RS08705;Dbxref=GenBank:WP_000814871.1;Name=WP_000814871.1;Ontology_term=GO:0030655,GO:0008800;gbkey=CDS;go_function=beta-lactamase activity|0008800||IEA;go_process=beta-lactam antibiotic catabolic process|0030655||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643861.1;locus_tag=D5F88_RS08705;product=serine hydrolase;protein_id=WP_000814871.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 47091 48347 . - . ID=gene-D5F88_RS08710;Name=D5F88_RS08710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08710;old_locus_tag=D5F88_08720 NZ_QYTI01000070.1 Protein Homology CDS 47091 48347 . - 0 ID=cds-WP_086163309.1;Parent=gene-D5F88_RS08710;Dbxref=GenBank:WP_086163309.1;Name=WP_086163309.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480657.1;locus_tag=D5F88_RS08710;product=GntP family permease;protein_id=WP_086163309.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 48372 49514 . - . ID=gene-D5F88_RS08715;Name=D5F88_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08715;old_locus_tag=D5F88_08725 NZ_QYTI01000070.1 Protein Homology CDS 48372 49514 . - 0 ID=cds-WP_016502797.1;Parent=gene-D5F88_RS08715;Dbxref=GenBank:WP_016502797.1;Name=WP_016502797.1;Ontology_term=GO:0016310,GO:0031388,GO:0005524,GO:0008887;gbkey=CDS;go_function=ATP binding|0005524||IEA,glycerate kinase activity|0008887||IEA;go_process=phosphorylation|0016310||IEA,organic acid phosphorylation|0031388||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000869902.1;locus_tag=D5F88_RS08715;product=glycerate kinase family protein;protein_id=WP_016502797.1;transl_table=11 NZ_QYTI01000070.1 RefSeq gene 49681 50114 . + . ID=gene-D5F88_RS08720;Name=D5F88_RS08720;end_range=50114,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08720;old_locus_tag=D5F88_08730;partial=true NZ_QYTI01000070.1 Protein Homology CDS 49681 50114 . + 0 ID=cds-WP_311768273.1;Parent=gene-D5F88_RS08720;Dbxref=GenBank:WP_311768273.1;Name=WP_311768273.1;end_range=50114,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000776693.1;locus_tag=D5F88_RS08720;partial=true;product=sugar diacid recognition domain-containing protein;protein_id=WP_311768273.1;transl_table=11 ##sequence-region NZ_QYTI01000071.1 1 111453 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000071.1 RefSeq region 1 111453 . + . ID=NZ_QYTI01000071.1:1..111453;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000071.1 RefSeq gene 94 366 . + . ID=gene-D5F88_RS08725;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=D5F88_RS08725;old_locus_tag=D5F88_08735 NZ_QYTI01000071.1 Protein Homology CDS 94 366 . + 0 ID=cds-WP_000268757.1;Parent=gene-D5F88_RS08725;Dbxref=GenBank:WP_000268757.1;Name=WP_000268757.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002884675.1;locus_tag=D5F88_RS08725;product=30S ribosomal protein S16;protein_id=WP_000268757.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 376 618 . + . ID=gene-D5F88_RS08730;Name=D5F88_RS08730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08730;old_locus_tag=D5F88_08740 NZ_QYTI01000071.1 Protein Homology CDS 376 618 . + 0 ID=cds-WP_000379626.1;Parent=gene-D5F88_RS08730;Dbxref=GenBank:WP_000379626.1;Name=WP_000379626.1;Ontology_term=GO:0003676;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000379626.1;locus_tag=D5F88_RS08730;product=KH domain-containing protein;protein_id=WP_000379626.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 750 2261 . + . ID=gene-D5F88_RS08735;Name=D5F88_RS08735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08735;old_locus_tag=D5F88_08745 NZ_QYTI01000071.1 Protein Homology CDS 750 2261 . + 0 ID=cds-WP_000895678.1;Parent=gene-D5F88_RS08735;Dbxref=GenBank:WP_000895678.1;Name=WP_000895678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771680.1;locus_tag=D5F88_RS08735;product=M protein trans-acting positive regulator PRD domain-containing protein;protein_id=WP_000895678.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 2369 2440 . + . ID=gene-D5F88_RS08740;Name=D5F88_RS08740;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS08740;old_locus_tag=D5F88_08750 NZ_QYTI01000071.1 tRNAscan-SE tRNA 2369 2440 . + . ID=rna-D5F88_RS08740;Parent=gene-D5F88_RS08740;anticodon=(pos:2401..2403);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS08740;product=tRNA-Gln NZ_QYTI01000071.1 tRNAscan-SE exon 2369 2440 . + . ID=exon-D5F88_RS08740-1;Parent=rna-D5F88_RS08740;anticodon=(pos:2401..2403);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS08740;product=tRNA-Gln NZ_QYTI01000071.1 RefSeq gene 2449 2520 . + . ID=gene-D5F88_RS08745;Name=D5F88_RS08745;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS08745;old_locus_tag=D5F88_08755 NZ_QYTI01000071.1 tRNAscan-SE tRNA 2449 2520 . + . ID=rna-D5F88_RS08745;Parent=gene-D5F88_RS08745;anticodon=(pos:2482..2484);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS08745;product=tRNA-Glu NZ_QYTI01000071.1 tRNAscan-SE exon 2449 2520 . + . ID=exon-D5F88_RS08745-1;Parent=rna-D5F88_RS08745;anticodon=(pos:2482..2484);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS08745;product=tRNA-Glu NZ_QYTI01000071.1 RefSeq gene 2583 3101 . + . ID=gene-D5F88_RS08750;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=D5F88_RS08750;old_locus_tag=D5F88_08760 NZ_QYTI01000071.1 Protein Homology CDS 2583 3101 . + 0 ID=cds-WP_000455623.1;Parent=gene-D5F88_RS08750;Dbxref=GenBank:WP_000455623.1;Name=WP_000455623.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0043022,GO:0005840;gbkey=CDS;gene=rimM;go_component=ribosome|0005840||IEA;go_function=ribosome binding|0043022||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016465641.1;locus_tag=D5F88_RS08750;product=ribosome maturation factor RimM;protein_id=WP_000455623.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 3088 3843 . + . ID=gene-D5F88_RS08755;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=D5F88_RS08755;old_locus_tag=D5F88_08765 NZ_QYTI01000071.1 Protein Homology CDS 3088 3843 . + 0 ID=cds-WP_000975542.1;Parent=gene-D5F88_RS08755;Dbxref=GenBank:WP_000975542.1;Name=WP_000975542.1;Ontology_term=GO:0008033,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N1)-methyltransferase activity|0052906||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647815.1;locus_tag=D5F88_RS08755;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_000975542.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 3824 4816 . + . ID=gene-D5F88_RS08760;Name=D5F88_RS08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08760;old_locus_tag=D5F88_08770 NZ_QYTI01000071.1 Protein Homology CDS 3824 4816 . + 0 ID=cds-WP_016503002.1;Parent=gene-D5F88_RS08760;Dbxref=GenBank:WP_016503002.1;Name=WP_016503002.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285367.1;locus_tag=D5F88_RS08760;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_016503002.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 4953 6023 . + . ID=gene-D5F88_RS08765;Name=D5F88_RS08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08765;old_locus_tag=D5F88_08775 NZ_QYTI01000071.1 Protein Homology CDS 4953 6023 . + 0 ID=cds-WP_000185919.1;Parent=gene-D5F88_RS08765;Dbxref=GenBank:WP_000185919.1;Name=WP_000185919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000185923.1;locus_tag=D5F88_RS08765;product=PTS sugar transporter subunit IIC;protein_id=WP_000185919.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 6036 6959 . + . ID=gene-D5F88_RS08770;Name=D5F88_RS08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08770;old_locus_tag=D5F88_08780 NZ_QYTI01000071.1 Protein Homology CDS 6036 6959 . + 0 ID=cds-WP_000964162.1;Parent=gene-D5F88_RS08770;Dbxref=GenBank:WP_000964162.1;Name=WP_000964162.1;Ontology_term=GO:0015940,GO:0008677,GO:0050661;gbkey=CDS;go_function=2-dehydropantoate 2-reductase activity|0008677||IEA,NADP binding|0050661||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000964166.1;locus_tag=D5F88_RS08770;product=2-dehydropantoate 2-reductase;protein_id=WP_000964162.1;transl_table=11 NZ_QYTI01000071.1 RefSeq pseudogene 7171 8805 . + . ID=gene-D5F88_RS08775;Name=D5F88_RS08775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS08775;old_locus_tag=D5F88_08785;pseudo=true NZ_QYTI01000071.1 Protein Homology CDS 7171 8805 . + 0 ID=cds-D5F88_RS08775;Parent=gene-D5F88_RS08775;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000976031.1;locus_tag=D5F88_RS08775;product=SH3 domain-containing protein;pseudo=true;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 8949 10184 . + . ID=gene-D5F88_RS08785;Name=D5F88_RS08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08785;old_locus_tag=D5F88_08795 NZ_QYTI01000071.1 Protein Homology CDS 8949 10184 . + 0 ID=cds-WP_124749523.1;Parent=gene-D5F88_RS08785;Dbxref=GenBank:WP_124749523.1;Name=WP_124749523.1;Ontology_term=GO:0008360,GO:0009252,GO:0071555,GO:0016755,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=aminoacyltransferase activity|0016755||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000175197.1;locus_tag=D5F88_RS08785;product=aminoacyltransferase;protein_id=WP_124749523.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 10315 11058 . + . ID=gene-D5F88_RS08790;Name=D5F88_RS08790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08790;old_locus_tag=D5F88_08800 NZ_QYTI01000071.1 Protein Homology CDS 10315 11058 . + 0 ID=cds-WP_000920253.1;Parent=gene-D5F88_RS08790;Dbxref=GenBank:WP_000920253.1;Name=WP_000920253.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000920251.1;locus_tag=D5F88_RS08790;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000920253.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 11055 11966 . + . ID=gene-D5F88_RS08795;Name=pfkB;gbkey=Gene;gene=pfkB;gene_biotype=protein_coding;locus_tag=D5F88_RS08795;old_locus_tag=D5F88_08805 NZ_QYTI01000071.1 Protein Homology CDS 11055 11966 . + 0 ID=cds-WP_000640762.1;Parent=gene-D5F88_RS08795;Dbxref=GenBank:WP_000640762.1;Name=WP_000640762.1;Ontology_term=GO:0008662;gbkey=CDS;gene=pfkB;go_function=1-phosphofructokinase activity|0008662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017284863.1;locus_tag=D5F88_RS08795;product=1-phosphofructokinase;protein_id=WP_000640762.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 11963 13927 . + . ID=gene-D5F88_RS08800;Name=D5F88_RS08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08800;old_locus_tag=D5F88_08810 NZ_QYTI01000071.1 Protein Homology CDS 11963 13927 . + 0 ID=cds-WP_124749151.1;Parent=gene-D5F88_RS08800;Dbxref=GenBank:WP_124749151.1;Name=WP_124749151.1;Ontology_term=GO:0009401,GO:0005351,GO:0022877,GO:0090563;gbkey=CDS;go_function=carbohydrate:proton symporter activity|0005351||IEA,protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA,protein-phosphocysteine-sugar phosphotransferase activity|0090563||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771056.1;locus_tag=D5F88_RS08800;product=PTS fructose transporter subunit IIABC;protein_id=WP_124749151.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 14116 14610 . + . ID=gene-D5F88_RS08805;Name=D5F88_RS08805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08805;old_locus_tag=D5F88_08815 NZ_QYTI01000071.1 Protein Homology CDS 14116 14610 . + 0 ID=cds-WP_000598909.1;Parent=gene-D5F88_RS08805;Dbxref=GenBank:WP_000598909.1;Name=WP_000598909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000598905.1;locus_tag=D5F88_RS08805;product=DUF2127 domain-containing protein;protein_id=WP_000598909.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 14661 15194 . + . ID=gene-D5F88_RS08810;Name=D5F88_RS08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08810;old_locus_tag=D5F88_08820 NZ_QYTI01000071.1 Protein Homology CDS 14661 15194 . + 0 ID=cds-WP_016502994.1;Parent=gene-D5F88_RS08810;Dbxref=GenBank:WP_016502994.1;Name=WP_016502994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000178080.1;locus_tag=D5F88_RS08810;product=hypothetical protein;protein_id=WP_016502994.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 15266 15646 . + . ID=gene-D5F88_RS08815;Name=D5F88_RS08815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08815;old_locus_tag=D5F88_08825 NZ_QYTI01000071.1 Protein Homology CDS 15266 15646 . + 0 ID=cds-WP_000452063.1;Parent=gene-D5F88_RS08815;Dbxref=GenBank:WP_000452063.1;Name=WP_000452063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000452064.1;locus_tag=D5F88_RS08815;product=DUF1149 family protein;protein_id=WP_000452063.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 15646 16494 . + . ID=gene-D5F88_RS08820;Name=D5F88_RS08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08820;old_locus_tag=D5F88_08830 NZ_QYTI01000071.1 Protein Homology CDS 15646 16494 . + 0 ID=cds-WP_086163398.1;Parent=gene-D5F88_RS08820;Dbxref=GenBank:WP_086163398.1;Name=WP_086163398.1;Ontology_term=GO:0005504;gbkey=CDS;go_function=fatty acid binding|0005504||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058626.1;locus_tag=D5F88_RS08820;product=DegV family protein;protein_id=WP_086163398.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 16679 17887 . + . ID=gene-D5F88_RS08825;Name=D5F88_RS08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08825;old_locus_tag=D5F88_08835 NZ_QYTI01000071.1 Protein Homology CDS 16679 17887 . + 0 ID=cds-WP_001238954.1;Parent=gene-D5F88_RS08825;Dbxref=GenBank:WP_001238954.1;Name=WP_001238954.1;Ontology_term=GO:0001680,GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=tRNA 3'-terminal CCA addition|0001680||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285349.1;locus_tag=D5F88_RS08825;product=CCA tRNA nucleotidyltransferase;protein_id=WP_001238954.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 17898 19766 . + . ID=gene-D5F88_RS08830;Name=D5F88_RS08830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08830;old_locus_tag=D5F88_08840 NZ_QYTI01000071.1 Protein Homology CDS 17898 19766 . + 0 ID=cds-WP_016502993.1;Parent=gene-D5F88_RS08830;Dbxref=GenBank:WP_016502993.1;Name=WP_016502993.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649433.1;locus_tag=D5F88_RS08830;product=ABC-F family ATP-binding cassette domain-containing protein;protein_id=WP_016502993.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 19763 20236 . + . ID=gene-D5F88_RS08835;Name=D5F88_RS08835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08835;old_locus_tag=D5F88_08845 NZ_QYTI01000071.1 Protein Homology CDS 19763 20236 . + 0 ID=cds-WP_000586888.1;Parent=gene-D5F88_RS08835;Dbxref=GenBank:WP_000586888.1;Name=WP_000586888.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502992.1;locus_tag=D5F88_RS08835;product=GNAT family N-acetyltransferase;protein_id=WP_000586888.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 20303 22042 . + . ID=gene-D5F88_RS08840;Name=D5F88_RS08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08840;old_locus_tag=D5F88_08850 NZ_QYTI01000071.1 Protein Homology CDS 20303 22042 . + 0 ID=cds-WP_086163397.1;Parent=gene-D5F88_RS08840;Dbxref=GenBank:WP_086163397.1;Name=WP_086163397.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480964.1;locus_tag=D5F88_RS08840;product=ABC transporter ATP-binding protein;protein_id=WP_086163397.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 22047 23816 . + . ID=gene-D5F88_RS08845;Name=D5F88_RS08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08845;old_locus_tag=D5F88_08855 NZ_QYTI01000071.1 Protein Homology CDS 22047 23816 . + 0 ID=cds-WP_016502989.1;Parent=gene-D5F88_RS08845;Dbxref=GenBank:WP_016502989.1;Name=WP_016502989.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480963.1;locus_tag=D5F88_RS08845;product=ABC transporter ATP-binding protein;protein_id=WP_016502989.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 23857 24366 . - . ID=gene-D5F88_RS08850;Name=D5F88_RS08850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08850;old_locus_tag=D5F88_08860 NZ_QYTI01000071.1 Protein Homology CDS 23857 24366 . - 0 ID=cds-WP_016502988.1;Parent=gene-D5F88_RS08850;Dbxref=GenBank:WP_016502988.1;Name=WP_016502988.1;Ontology_term=GO:0009268;gbkey=CDS;go_process=response to pH|0009268||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771981.1;locus_tag=D5F88_RS08850;product=HdeD family acid-resistance protein;protein_id=WP_016502988.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 24534 25883 . + . ID=gene-D5F88_RS08855;Name=gdhA;gbkey=Gene;gene=gdhA;gene_biotype=protein_coding;locus_tag=D5F88_RS08855;old_locus_tag=D5F88_08865 NZ_QYTI01000071.1 Protein Homology CDS 24534 25883 . + 0 ID=cds-WP_086163396.1;Parent=gene-D5F88_RS08855;Dbxref=GenBank:WP_086163396.1;Name=WP_086163396.1;Ontology_term=GO:0006520,GO:0016639;gbkey=CDS;gene=gdhA;go_function=oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor|0016639||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647818.1;locus_tag=D5F88_RS08855;product=NADP-specific glutamate dehydrogenase;protein_id=WP_086163396.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 25953 26363 . + . ID=gene-D5F88_RS08860;Name=D5F88_RS08860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08860;old_locus_tag=D5F88_08870 NZ_QYTI01000071.1 Protein Homology CDS 25953 26363 . + 0 ID=cds-WP_016502986.1;Parent=gene-D5F88_RS08860;Dbxref=GenBank:WP_016502986.1;Name=WP_016502986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502986.1;locus_tag=D5F88_RS08860;product=peptide deformylase;protein_id=WP_016502986.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 26400 28472 . - . ID=gene-D5F88_RS08865;Name=D5F88_RS08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08865;old_locus_tag=D5F88_08875 NZ_QYTI01000071.1 Protein Homology CDS 26400 28472 . - 0 ID=cds-WP_086163395.1;Parent=gene-D5F88_RS08865;Dbxref=GenBank:WP_086163395.1;Name=WP_086163395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650655.1;locus_tag=D5F88_RS08865;product=surface-anchored 5'-nucleotidase;protein_id=WP_086163395.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 28741 29181 . + . ID=gene-D5F88_RS08870;Name=D5F88_RS08870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08870;old_locus_tag=D5F88_08880 NZ_QYTI01000071.1 Protein Homology CDS 28741 29181 . + 0 ID=cds-WP_000431168.1;Parent=gene-D5F88_RS08870;Dbxref=GenBank:WP_000431168.1;Name=WP_000431168.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771881.1;locus_tag=D5F88_RS08870;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_000431168.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 29228 31045 . + . ID=gene-D5F88_RS08875;Name=D5F88_RS08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08875;old_locus_tag=D5F88_08885 NZ_QYTI01000071.1 Protein Homology CDS 29228 31045 . + 0 ID=cds-WP_016502983.1;Parent=gene-D5F88_RS08875;Dbxref=GenBank:WP_016502983.1;Name=WP_016502983.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000481821.1;locus_tag=D5F88_RS08875;product=ABC transporter ATP-binding protein;protein_id=WP_016502983.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 31035 32789 . + . ID=gene-D5F88_RS08880;Name=D5F88_RS08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08880;old_locus_tag=D5F88_08890 NZ_QYTI01000071.1 Protein Homology CDS 31035 32789 . + 0 ID=cds-WP_086163394.1;Parent=gene-D5F88_RS08880;Dbxref=GenBank:WP_086163394.1;Name=WP_086163394.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000851082.1;locus_tag=D5F88_RS08880;product=ABC transporter ATP-binding protein;protein_id=WP_086163394.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 32897 33523 . + . ID=gene-D5F88_RS08885;Name=D5F88_RS08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08885;old_locus_tag=D5F88_08895 NZ_QYTI01000071.1 Protein Homology CDS 32897 33523 . + 0 ID=cds-WP_000449636.1;Parent=gene-D5F88_RS08885;Dbxref=GenBank:WP_000449636.1;Name=WP_000449636.1;Ontology_term=GO:0015969,GO:0016310,GO:0005524,GO:0008728,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,GTP diphosphokinase activity|0008728||IEA,metal ion binding|0046872||IEA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000449638.1;locus_tag=D5F88_RS08885;product=GTP pyrophosphokinase;protein_id=WP_000449636.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 33525 34211 . + . ID=gene-D5F88_RS08890;Name=D5F88_RS08890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08890;old_locus_tag=D5F88_08900 NZ_QYTI01000071.1 Protein Homology CDS 33525 34211 . + 0 ID=cds-WP_001264420.1;Parent=gene-D5F88_RS08890;Dbxref=GenBank:WP_001264420.1;Name=WP_001264420.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632090.1;locus_tag=D5F88_RS08890;product=response regulator transcription factor;protein_id=WP_001264420.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 34211 35440 . + . ID=gene-D5F88_RS08895;Name=D5F88_RS08895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08895;old_locus_tag=D5F88_08905 NZ_QYTI01000071.1 Protein Homology CDS 34211 35440 . + 0 ID=cds-WP_000489523.1;Parent=gene-D5F88_RS08895;Dbxref=GenBank:WP_000489523.1;Name=WP_000489523.1;Ontology_term=GO:0000160,GO:0007165,GO:0000155,GO:0004673,GO:0005524,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000489520.1;locus_tag=D5F88_RS08895;product=sensor histidine kinase;protein_id=WP_000489523.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 35556 36434 . + . ID=gene-D5F88_RS08900;Name=mvk;gbkey=Gene;gene=mvk;gene_biotype=protein_coding;locus_tag=D5F88_RS08900;old_locus_tag=D5F88_08910 NZ_QYTI01000071.1 Protein Homology CDS 35556 36434 . + 0 ID=cds-WP_000659719.1;Parent=gene-D5F88_RS08900;Dbxref=GenBank:WP_000659719.1;Name=WP_000659719.1;Ontology_term=GO:0016126,GO:0019287,GO:0004496,GO:0005524,GO:0005737;gbkey=CDS;gene=mvk;go_component=cytoplasm|0005737||IEA;go_function=mevalonate kinase activity|0004496||IEA,ATP binding|0005524||IEA;go_process=sterol biosynthetic process|0016126||IEA,isopentenyl diphosphate biosynthetic process%2C mevalonate pathway|0019287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000659716.1;locus_tag=D5F88_RS08900;product=mevalonate kinase;protein_id=WP_000659719.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 36416 37360 . + . ID=gene-D5F88_RS08905;Name=mvaD;gbkey=Gene;gene=mvaD;gene_biotype=protein_coding;locus_tag=D5F88_RS08905;old_locus_tag=D5F88_08915 NZ_QYTI01000071.1 Protein Homology CDS 36416 37360 . + 0 ID=cds-WP_000348814.1;Parent=gene-D5F88_RS08905;Dbxref=GenBank:WP_000348814.1;Name=WP_000348814.1;Ontology_term=GO:0019287,GO:0004163,GO:0005829;gbkey=CDS;gene=mvaD;go_component=cytosol|0005829||IEA;go_function=diphosphomevalonate decarboxylase activity|0004163||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C mevalonate pathway|0019287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000348814.1;locus_tag=D5F88_RS08905;product=diphosphomevalonate decarboxylase;protein_id=WP_000348814.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 37353 38345 . + . ID=gene-D5F88_RS08910;Name=D5F88_RS08910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08910;old_locus_tag=D5F88_08920 NZ_QYTI01000071.1 Protein Homology CDS 37353 38345 . + 0 ID=cds-WP_000241525.1;Parent=gene-D5F88_RS08910;Dbxref=GenBank:WP_000241525.1;Name=WP_000241525.1;Ontology_term=GO:0016126,GO:0019287,GO:0004631;gbkey=CDS;go_function=phosphomevalonate kinase activity|0004631||IEA;go_process=sterol biosynthetic process|0016126||IEA,isopentenyl diphosphate biosynthetic process%2C mevalonate pathway|0019287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000241525.1;locus_tag=D5F88_RS08910;product=phosphomevalonate kinase;protein_id=WP_000241525.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 38342 39337 . + . ID=gene-D5F88_RS08915;Name=fni;gbkey=Gene;gene=fni;gene_biotype=protein_coding;locus_tag=D5F88_RS08915;old_locus_tag=D5F88_08925 NZ_QYTI01000071.1 Protein Homology CDS 38342 39337 . + 0 ID=cds-WP_016502978.1;Parent=gene-D5F88_RS08915;Dbxref=GenBank:WP_016502978.1;Name=WP_016502978.1;Ontology_term=GO:0008299,GO:0004452,GO:0010181;gbkey=CDS;gene=fni;go_function=isopentenyl-diphosphate delta-isomerase activity|0004452||IEA,FMN binding|0010181||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000184890.1;locus_tag=D5F88_RS08915;product=type 2 isopentenyl-diphosphate Delta-isomerase;protein_id=WP_016502978.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 39405 39623 . + . ID=gene-D5F88_RS08920;Name=D5F88_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08920;old_locus_tag=D5F88_08930 NZ_QYTI01000071.1 Protein Homology CDS 39405 39623 . + 0 ID=cds-WP_000594209.1;Parent=gene-D5F88_RS08920;Dbxref=GenBank:WP_000594209.1;Name=WP_000594209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000594209.1;locus_tag=D5F88_RS08920;product=DUF4649 family protein;protein_id=WP_000594209.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 39669 40523 . - . ID=gene-D5F88_RS08925;Name=D5F88_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08925;old_locus_tag=D5F88_08935 NZ_QYTI01000071.1 Protein Homology CDS 39669 40523 . - 0 ID=cds-WP_086163393.1;Parent=gene-D5F88_RS08925;Dbxref=GenBank:WP_086163393.1;Name=WP_086163393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000206687.1;locus_tag=D5F88_RS08925;product=glutathione S-transferase C-terminal domain-containing protein;protein_id=WP_086163393.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 40624 41538 . - . ID=gene-D5F88_RS08930;Name=D5F88_RS08930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08930;old_locus_tag=D5F88_08940 NZ_QYTI01000071.1 Protein Homology CDS 40624 41538 . - 0 ID=cds-WP_016502976.1;Parent=gene-D5F88_RS08930;Dbxref=GenBank:WP_016502976.1;Name=WP_016502976.1;Ontology_term=GO:0008654,GO:0016310,GO:0001727,GO:0005524;gbkey=CDS;go_function=lipid kinase activity|0001727||IEA,ATP binding|0005524||IEA;go_process=phospholipid biosynthetic process|0008654||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646993.1;locus_tag=D5F88_RS08930;product=diacylglycerol/lipid kinase family protein;protein_id=WP_016502976.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 41625 42281 . - . ID=gene-D5F88_RS08935;Name=trhA;gbkey=Gene;gene=trhA;gene_biotype=protein_coding;locus_tag=D5F88_RS08935;old_locus_tag=D5F88_08945 NZ_QYTI01000071.1 Protein Homology CDS 41625 42281 . - 0 ID=cds-WP_000910676.1;Parent=gene-D5F88_RS08935;Dbxref=GenBank:WP_000910676.1;Name=WP_000910676.1;Ontology_term=GO:0019835;gbkey=CDS;gene=trhA;go_process=cytolysis|0019835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000910676.1;locus_tag=D5F88_RS08935;product=PAQR family membrane homeostasis protein TrhA;protein_id=WP_000910676.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 42274 42723 . - . ID=gene-D5F88_RS08940;Name=D5F88_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08940;old_locus_tag=D5F88_08950 NZ_QYTI01000071.1 Protein Homology CDS 42274 42723 . - 0 ID=cds-WP_016502975.1;Parent=gene-D5F88_RS08940;Dbxref=GenBank:WP_016502975.1;Name=WP_016502975.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001039194.1;locus_tag=D5F88_RS08940;product=DUF1836 domain-containing protein;protein_id=WP_016502975.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 42815 44098 . - . ID=gene-D5F88_RS08945;Name=D5F88_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08945;old_locus_tag=D5F88_08955 NZ_QYTI01000071.1 Protein Homology CDS 42815 44098 . - 0 ID=cds-WP_086163392.1;Parent=gene-D5F88_RS08945;Dbxref=GenBank:WP_086163392.1;Name=WP_086163392.1;Ontology_term=GO:0015936,GO:0004420,GO:0016616;gbkey=CDS;go_function=hydroxymethylglutaryl-CoA reductase (NADPH) activity|0004420||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=coenzyme A metabolic process|0015936||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647340.1;locus_tag=D5F88_RS08945;product=hydroxymethylglutaryl-CoA reductase%2C degradative;protein_id=WP_086163392.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 44100 45272 . - . ID=gene-D5F88_RS08950;Name=D5F88_RS08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08950;old_locus_tag=D5F88_08960 NZ_QYTI01000071.1 Protein Homology CDS 44100 45272 . - 0 ID=cds-WP_001873466.1;Parent=gene-D5F88_RS08950;Dbxref=GenBank:WP_001873466.1;Name=WP_001873466.1;Ontology_term=GO:0004421;gbkey=CDS;go_function=hydroxymethylglutaryl-CoA synthase activity|0004421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001923259.1;locus_tag=D5F88_RS08950;product=hydroxymethylglutaryl-CoA synthase;protein_id=WP_001873466.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 45426 46265 . + . ID=gene-D5F88_RS08955;Name=D5F88_RS08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08955;old_locus_tag=D5F88_08965 NZ_QYTI01000071.1 Protein Homology CDS 45426 46265 . + 0 ID=cds-WP_000158595.1;Parent=gene-D5F88_RS08955;Dbxref=GenBank:WP_000158595.1;Name=WP_000158595.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632084.1;locus_tag=D5F88_RS08955;product=thymidylate synthase;protein_id=WP_000158595.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 46345 46839 . + . ID=gene-D5F88_RS08960;Name=D5F88_RS08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08960;old_locus_tag=D5F88_08970 NZ_QYTI01000071.1 Protein Homology CDS 46345 46839 . + 0 ID=cds-WP_016502972.1;Parent=gene-D5F88_RS08960;Dbxref=GenBank:WP_016502972.1;Name=WP_016502972.1;Ontology_term=GO:0046654,GO:0004146,GO:0050661;gbkey=CDS;go_function=dihydrofolate reductase activity|0004146||IEA,NADP binding|0050661||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000166044.1;locus_tag=D5F88_RS08960;product=dihydrofolate reductase;protein_id=WP_016502972.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 47057 48283 . + . ID=gene-D5F88_RS08970;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=D5F88_RS08970;old_locus_tag=D5F88_08980 NZ_QYTI01000071.1 Protein Homology CDS 47057 48283 . + 0 ID=cds-WP_000918415.1;Parent=gene-D5F88_RS08970;Dbxref=GenBank:WP_000918415.1;Name=WP_000918415.1;Ontology_term=GO:0005524,GO:0008270,GO:0016887,GO:0046983;gbkey=CDS;gene=clpX;go_function=ATP binding|0005524||IEA,zinc ion binding|0008270||IEA,ATP hydrolysis activity|0016887||IEA,protein dimerization activity|0046983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002984948.1;locus_tag=D5F88_RS08970;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_000918415.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 48294 48890 . + . ID=gene-D5F88_RS08975;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=D5F88_RS08975;old_locus_tag=D5F88_08985 NZ_QYTI01000071.1 Protein Homology CDS 48294 48890 . + 0 ID=cds-WP_000796925.1;Parent=gene-D5F88_RS08975;Dbxref=GenBank:WP_000796925.1;Name=WP_000796925.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000796923.1;locus_tag=D5F88_RS08975;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=WP_000796925.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 48952 49500 . - . ID=gene-D5F88_RS08980;Name=D5F88_RS08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08980;old_locus_tag=D5F88_08990 NZ_QYTI01000071.1 Protein Homology CDS 48952 49500 . - 0 ID=cds-WP_086163391.1;Parent=gene-D5F88_RS08980;Dbxref=GenBank:WP_086163391.1;Name=WP_086163391.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000140659.1;locus_tag=D5F88_RS08980;product=TetR/AcrR family transcriptional regulator;protein_id=WP_086163391.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 49592 50242 . + . ID=gene-D5F88_RS08990;Name=D5F88_RS08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS08990;old_locus_tag=D5F88_09000 NZ_QYTI01000071.1 Protein Homology CDS 49592 50242 . + 0 ID=cds-WP_016502970.1;Parent=gene-D5F88_RS08990;Dbxref=GenBank:WP_016502970.1;Name=WP_016502970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000645479.1;locus_tag=D5F88_RS08990;product=HXXEE domain-containing protein;protein_id=WP_016502970.1;transl_table=11 NZ_QYTI01000071.1 RefSeq pseudogene 50254 50902 . + . ID=gene-D5F88_RS08995;Name=D5F88_RS08995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS08995;old_locus_tag=D5F88_09005;pseudo=true NZ_QYTI01000071.1 Protein Homology CDS 50254 50902 . + 0 ID=cds-D5F88_RS08995;Parent=gene-D5F88_RS08995;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000120088.1;locus_tag=D5F88_RS08995;product=HXXEE domain-containing protein;pseudo=true;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 51032 52408 . + . ID=gene-D5F88_RS09000;Name=D5F88_RS09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09000;old_locus_tag=D5F88_09010 NZ_QYTI01000071.1 Protein Homology CDS 51032 52408 . + 0 ID=cds-WP_000427484.1;Parent=gene-D5F88_RS09000;Dbxref=GenBank:WP_000427484.1;Name=WP_000427484.1;Ontology_term=GO:0003333,GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transmembrane transport|0003333||IEA,amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058615.1;locus_tag=D5F88_RS09000;product=amino acid permease;protein_id=WP_000427484.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 52413 53357 . + . ID=gene-D5F88_RS09005;Name=mmuM;gbkey=Gene;gene=mmuM;gene_biotype=protein_coding;locus_tag=D5F88_RS09005;old_locus_tag=D5F88_09015 NZ_QYTI01000071.1 Protein Homology CDS 52413 53357 . + 0 ID=cds-WP_016502966.1;Parent=gene-D5F88_RS09005;Dbxref=GenBank:WP_016502966.1;Name=WP_016502966.1;Ontology_term=GO:0009086,GO:0047150;gbkey=CDS;gene=mmuM;go_function=betaine-homocysteine S-methyltransferase activity|0047150||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000532333.1;locus_tag=D5F88_RS09005;product=homocysteine S-methyltransferase;protein_id=WP_016502966.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 53451 55559 . - . ID=gene-D5F88_RS09010;Name=D5F88_RS09010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09010;old_locus_tag=D5F88_09020 NZ_QYTI01000071.1 Protein Homology CDS 53451 55559 . - 0 ID=cds-WP_016502965.1;Parent=gene-D5F88_RS09010;Dbxref=GenBank:WP_016502965.1;Name=WP_016502965.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000002818.1;locus_tag=D5F88_RS09010;product=AAA family ATPase;protein_id=WP_016502965.1;transl_table=11 NZ_QYTI01000071.1 cmsearch sequence_feature 55829 55962 . + . ID=id-NZ_QYTI01000071.1:55829..55962;Dbxref=RFAM:RF00557;Note=ribosomal protein L10 leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5 NZ_QYTI01000071.1 RefSeq gene 55992 56492 . + . ID=gene-D5F88_RS09015;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=D5F88_RS09015;old_locus_tag=D5F88_09025 NZ_QYTI01000071.1 Protein Homology CDS 55992 56492 . + 0 ID=cds-WP_001287288.1;Parent=gene-D5F88_RS09015;Dbxref=GenBank:WP_001287288.1;Name=WP_001287288.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001287287.1;locus_tag=D5F88_RS09015;product=50S ribosomal protein L10;protein_id=WP_001287288.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 56556 56921 . + . ID=gene-D5F88_RS09020;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=D5F88_RS09020;old_locus_tag=D5F88_09030 NZ_QYTI01000071.1 Protein Homology CDS 56556 56921 . + 0 ID=cds-WP_001196973.1;Parent=gene-D5F88_RS09020;Dbxref=GenBank:WP_001196973.1;Name=WP_001196973.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplL;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018371186.1;locus_tag=D5F88_RS09020;product=50S ribosomal protein L7/L12;protein_id=WP_001196973.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 57148 57528 . + . ID=gene-D5F88_RS09025;Name=D5F88_RS09025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09025;old_locus_tag=D5F88_09035 NZ_QYTI01000071.1 Protein Homology CDS 57148 57528 . + 0 ID=cds-WP_001883227.1;Parent=gene-D5F88_RS09025;Dbxref=GenBank:WP_001883227.1;Name=WP_001883227.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001883227.1;locus_tag=D5F88_RS09025;product=ATP-binding cassette domain-containing protein;protein_id=WP_001883227.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 58079 58612 . + . ID=gene-D5F88_RS11845;Name=D5F88_RS11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11845;old_locus_tag=D5F88_09045 NZ_QYTI01000071.1 Protein Homology CDS 58079 58612 . + 0 ID=cds-WP_016502964.1;Parent=gene-D5F88_RS11845;Dbxref=GenBank:WP_016502964.1;Name=WP_016502964.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017770971.1;locus_tag=D5F88_RS11845;product=hypothetical protein;protein_id=WP_016502964.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 58867 59463 . - . ID=gene-D5F88_RS09040;Name=D5F88_RS09040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09040;old_locus_tag=D5F88_09050 NZ_QYTI01000071.1 Protein Homology CDS 58867 59463 . - 0 ID=cds-WP_016502963.1;Parent=gene-D5F88_RS09040;Dbxref=GenBank:WP_016502963.1;Name=WP_016502963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058613.1;locus_tag=D5F88_RS09040;product=Ltp family lipoprotein;protein_id=WP_016502963.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 59693 60190 . + . ID=gene-D5F88_RS09045;Name=D5F88_RS09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09045;old_locus_tag=D5F88_09055 NZ_QYTI01000071.1 Protein Homology CDS 59693 60190 . + 0 ID=cds-WP_016502962.1;Parent=gene-D5F88_RS09045;Dbxref=GenBank:WP_016502962.1;Name=WP_016502962.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502962.1;locus_tag=D5F88_RS09045;product=hypothetical protein;protein_id=WP_016502962.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 60194 60610 . + . ID=gene-D5F88_RS09050;Name=D5F88_RS09050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09050;old_locus_tag=D5F88_09060 NZ_QYTI01000071.1 Protein Homology CDS 60194 60610 . + 0 ID=cds-WP_161513764.1;Parent=gene-D5F88_RS09050;Dbxref=GenBank:WP_161513764.1;Name=WP_161513764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650340.1;locus_tag=D5F88_RS09050;product=VOC family protein;protein_id=WP_161513764.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 60710 62050 . + . ID=gene-D5F88_RS09055;Name=D5F88_RS09055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09055;old_locus_tag=D5F88_09065 NZ_QYTI01000071.1 Protein Homology CDS 60710 62050 . + 0 ID=cds-WP_016502960.1;Parent=gene-D5F88_RS09055;Dbxref=GenBank:WP_016502960.1;Name=WP_016502960.1;Ontology_term=GO:0055085,GO:0015297,GO:0042910,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA,xenobiotic transmembrane transporter activity|0042910||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000285047.1;locus_tag=D5F88_RS09055;product=MATE family efflux transporter;protein_id=WP_016502960.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 62109 62876 . - . ID=gene-D5F88_RS09060;Name=D5F88_RS09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09060;old_locus_tag=D5F88_09070 NZ_QYTI01000071.1 Protein Homology CDS 62109 62876 . - 0 ID=cds-WP_000567584.1;Parent=gene-D5F88_RS09060;Dbxref=GenBank:WP_000567584.1;Name=WP_000567584.1;Ontology_term=GO:0008033,GO:0008616,GO:0046872,GO:0051539,GO:0052693;gbkey=CDS;go_function=metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=tRNA processing|0008033||IEA,tRNA queuosine(34) biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000567582.1;locus_tag=D5F88_RS09060;product=epoxyqueuosine reductase QueH;protein_id=WP_000567584.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 63035 64816 . + . ID=gene-D5F88_RS09065;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=D5F88_RS09065;old_locus_tag=D5F88_09075 NZ_QYTI01000071.1 Protein Homology CDS 63035 64816 . + 0 ID=cds-WP_016480880.1;Parent=gene-D5F88_RS09065;Dbxref=GenBank:WP_016480880.1;Name=WP_016480880.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649308.1;locus_tag=D5F88_RS09065;product=excinuclease ABC subunit UvrC;protein_id=WP_016480880.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 64858 66639 . - . ID=gene-D5F88_RS09070;Name=D5F88_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09070;old_locus_tag=D5F88_09080 NZ_QYTI01000071.1 Protein Homology CDS 64858 66639 . - 0 ID=cds-WP_016480879.1;Parent=gene-D5F88_RS09070;Dbxref=GenBank:WP_016480879.1;Name=WP_016480879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480879.1;locus_tag=D5F88_RS09070;product=glycerophosphodiester phosphodiesterase;protein_id=WP_016480879.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 66809 67411 . + . ID=gene-D5F88_RS09075;Name=D5F88_RS09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09075;old_locus_tag=D5F88_09085 NZ_QYTI01000071.1 Protein Homology CDS 66809 67411 . + 0 ID=cds-WP_016480878.1;Parent=gene-D5F88_RS09075;Dbxref=GenBank:WP_016480878.1;Name=WP_016480878.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011184478.1;locus_tag=D5F88_RS09075;product=nitroreductase family protein;protein_id=WP_016480878.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 67458 68864 . + . ID=gene-D5F88_RS09080;Name=pepV;gbkey=Gene;gene=pepV;gene_biotype=protein_coding;locus_tag=D5F88_RS09080;old_locus_tag=D5F88_09090 NZ_QYTI01000071.1 Protein Homology CDS 67458 68864 . + 0 ID=cds-WP_000150954.1;Parent=gene-D5F88_RS09080;Dbxref=GenBank:WP_000150954.1;Name=WP_000150954.1;Ontology_term=GO:0006221,GO:0004151,GO:0046872;gbkey=CDS;gene=pepV;go_function=dihydroorotase activity|0004151||IEA,metal ion binding|0046872||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645438.1;locus_tag=D5F88_RS09080;product=dipeptidase PepV;protein_id=WP_000150954.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 68961 69545 . + . ID=gene-D5F88_RS09085;Name=D5F88_RS09085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09085;old_locus_tag=D5F88_09095 NZ_QYTI01000071.1 Protein Homology CDS 68961 69545 . + 0 ID=cds-WP_016480876.1;Parent=gene-D5F88_RS09085;Dbxref=GenBank:WP_016480876.1;Name=WP_016480876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000130595.1;locus_tag=D5F88_RS09085;product=uracil-DNA glycosylase family protein;protein_id=WP_016480876.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 69560 70294 . + . ID=gene-D5F88_RS09090;Name=D5F88_RS09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09090;old_locus_tag=D5F88_09100 NZ_QYTI01000071.1 Protein Homology CDS 69560 70294 . + 0 ID=cds-WP_001205488.1;Parent=gene-D5F88_RS09090;Dbxref=GenBank:WP_001205488.1;Name=WP_001205488.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650202.1;locus_tag=D5F88_RS09090;product=PHP domain-containing protein;protein_id=WP_001205488.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 70463 74221 . + . ID=gene-D5F88_RS09095;Name=D5F88_RS09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09095;old_locus_tag=D5F88_09105 NZ_QYTI01000071.1 Protein Homology CDS 70463 74221 . + 0 ID=cds-WP_124749008.1;Parent=gene-D5F88_RS09095;Dbxref=GenBank:WP_124749008.1;Name=WP_124749008.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000823026.1;locus_tag=D5F88_RS09095;product=pullulanase;protein_id=WP_124749008.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 74356 75273 . + . ID=gene-D5F88_RS09100;Name=D5F88_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09100;old_locus_tag=D5F88_09110 NZ_QYTI01000071.1 Protein Homology CDS 74356 75273 . + 0 ID=cds-WP_000800360.1;Parent=gene-D5F88_RS09100;Dbxref=GenBank:WP_000800360.1;Name=WP_000800360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000800355.1;locus_tag=D5F88_RS09100;product=TDT family transporter;protein_id=WP_000800360.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 75315 75491 . - . ID=gene-D5F88_RS09105;Name=D5F88_RS09105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09105;old_locus_tag=D5F88_09115 NZ_QYTI01000071.1 Protein Homology CDS 75315 75491 . - 0 ID=cds-WP_000239229.1;Parent=gene-D5F88_RS09105;Dbxref=GenBank:WP_000239229.1;Name=WP_000239229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000239229.1;locus_tag=D5F88_RS09105;product=DUF3042 family protein;protein_id=WP_000239229.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 75602 76492 . + . ID=gene-D5F88_RS09110;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=D5F88_RS09110;old_locus_tag=D5F88_09120 NZ_QYTI01000071.1 Protein Homology CDS 75602 76492 . + 0 ID=cds-WP_001226485.1;Parent=gene-D5F88_RS09110;Dbxref=GenBank:WP_001226485.1;Name=WP_001226485.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001226479.1;locus_tag=D5F88_RS09110;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_001226485.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 76583 77821 . + . ID=gene-D5F88_RS09115;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=D5F88_RS09115;old_locus_tag=D5F88_09125 NZ_QYTI01000071.1 Protein Homology CDS 76583 77821 . + 0 ID=cds-WP_000573351.1;Parent=gene-D5F88_RS09115;Dbxref=GenBank:WP_000573351.1;Name=WP_000573351.1;Ontology_term=GO:0005525;gbkey=CDS;gene=hflX;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000573352.1;locus_tag=D5F88_RS09115;product=GTPase HflX;protein_id=WP_000573351.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 77814 78461 . + . ID=gene-D5F88_RS09120;Name=D5F88_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09120;old_locus_tag=D5F88_09130 NZ_QYTI01000071.1 Protein Homology CDS 77814 78461 . + 0 ID=cds-WP_016502956.1;Parent=gene-D5F88_RS09120;Dbxref=GenBank:WP_016502956.1;Name=WP_016502956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000568323.1;locus_tag=D5F88_RS09120;product=cystathionine beta-lyase;protein_id=WP_016502956.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 78503 79432 . + . ID=gene-D5F88_RS09125;Name=rnz;gbkey=Gene;gene=rnz;gene_biotype=protein_coding;locus_tag=D5F88_RS09125;old_locus_tag=D5F88_09135 NZ_QYTI01000071.1 Protein Homology CDS 78503 79432 . + 0 ID=cds-WP_000405388.1;Parent=gene-D5F88_RS09125;Dbxref=GenBank:WP_000405388.1;Name=WP_000405388.1;Ontology_term=GO:0042780,GO:0016891;gbkey=CDS;gene=rnz;go_function=RNA endonuclease activity producing 5'-phosphomonoesters%2C hydrolytic mechanism|0016891||IEA;go_process=tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000405389.1;locus_tag=D5F88_RS09125;product=ribonuclease Z;protein_id=WP_000405388.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 79434 80195 . + . ID=gene-D5F88_RS09130;Name=D5F88_RS09130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09130;old_locus_tag=D5F88_09140 NZ_QYTI01000071.1 Protein Homology CDS 79434 80195 . + 0 ID=cds-WP_000124580.1;Parent=gene-D5F88_RS09130;Dbxref=GenBank:WP_000124580.1;Name=WP_000124580.1;Ontology_term=GO:0016491,GO:0070401,GO:0070403;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NADP+ binding|0070401||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771878.1;locus_tag=D5F88_RS09130;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_000124580.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 80192 82390 . + . ID=gene-D5F88_RS09135;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=D5F88_RS09135;old_locus_tag=D5F88_09145 NZ_QYTI01000071.1 Protein Homology CDS 80192 82390 . + 0 ID=cds-WP_000622234.1;Parent=gene-D5F88_RS09135;Dbxref=GenBank:WP_000622234.1;Name=WP_000622234.1;Ontology_term=GO:0006281,GO:0006310,GO:0008409;gbkey=CDS;gene=recJ;go_function=5'-3' exonuclease activity|0008409||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000622225.1;locus_tag=D5F88_RS09135;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=WP_000622234.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 82542 85106 . + . ID=gene-D5F88_RS09145;Name=D5F88_RS09145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09145;old_locus_tag=D5F88_09155 NZ_QYTI01000071.1 Protein Homology CDS 82542 85106 . + 0 ID=cds-WP_086163386.1;Parent=gene-D5F88_RS09145;Dbxref=GenBank:WP_086163386.1;Name=WP_086163386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650575.1;locus_tag=D5F88_RS09145;product=GBS Bsp-like repeat-containing protein;protein_id=WP_086163386.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 85229 85747 . + . ID=gene-D5F88_RS09150;Name=D5F88_RS09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09150;old_locus_tag=D5F88_09160 NZ_QYTI01000071.1 Protein Homology CDS 85229 85747 . + 0 ID=cds-WP_000365343.1;Parent=gene-D5F88_RS09150;Dbxref=GenBank:WP_000365343.1;Name=WP_000365343.1;Ontology_term=GO:0006168,GO:0009116,GO:0003999;gbkey=CDS;go_function=adenine phosphoribosyltransferase activity|0003999||IEA;go_process=adenine salvage|0006168||IEA,nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014294327.1;locus_tag=D5F88_RS09150;product=adenine phosphoribosyltransferase;protein_id=WP_000365343.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 85865 86545 . + . ID=gene-D5F88_RS09155;Name=D5F88_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09155;old_locus_tag=D5F88_09165 NZ_QYTI01000071.1 Protein Homology CDS 85865 86545 . + 0 ID=cds-WP_000221657.1;Parent=gene-D5F88_RS09155;Dbxref=GenBank:WP_000221657.1;Name=WP_000221657.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000221657.1;locus_tag=D5F88_RS09155;product=DnaD domain-containing protein;protein_id=WP_000221657.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 86649 87332 . + . ID=gene-D5F88_RS09160;Name=D5F88_RS09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09160;old_locus_tag=D5F88_09170 NZ_QYTI01000071.1 Protein Homology CDS 86649 87332 . + 0 ID=cds-WP_000365677.1;Parent=gene-D5F88_RS09160;Dbxref=GenBank:WP_000365677.1;Name=WP_000365677.1;Ontology_term=GO:0008033,GO:0032259,GO:0008757,GO:0160105,GO:1904047;gbkey=CDS;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,tRNA (adenine(22)-N1)-methyltransferase activity|0160105||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA processing|0008033||IEA,methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000365681.1;locus_tag=D5F88_RS09160;product=tRNA (adenine(22)-N(1))-methyltransferase;protein_id=WP_000365677.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 87322 88110 . + . ID=gene-D5F88_RS09165;Name=D5F88_RS09165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09165;old_locus_tag=D5F88_09175 NZ_QYTI01000071.1 Protein Homology CDS 87322 88110 . + 0 ID=cds-WP_000647415.1;Parent=gene-D5F88_RS09165;Dbxref=GenBank:WP_000647415.1;Name=WP_000647415.1;Ontology_term=GO:0051540,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=metal cluster binding|0051540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058605.1;locus_tag=D5F88_RS09165;product=Nif3-like dinuclear metal center hexameric protein;protein_id=WP_000647415.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 88119 89222 . + . ID=gene-D5F88_RS09170;Name=D5F88_RS09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09170;old_locus_tag=D5F88_09180 NZ_QYTI01000071.1 Protein Homology CDS 88119 89222 . + 0 ID=cds-WP_000716833.1;Parent=gene-D5F88_RS09170;Dbxref=GenBank:WP_000716833.1;Name=WP_000716833.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058604.1;locus_tag=D5F88_RS09170;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_000716833.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 89281 90150 . + . ID=gene-D5F88_RS09175;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;locus_tag=D5F88_RS09175;old_locus_tag=D5F88_09185 NZ_QYTI01000071.1 Protein Homology CDS 89281 90150 . + 0 ID=cds-WP_000676112.1;Parent=gene-D5F88_RS09175;Dbxref=GenBank:WP_000676112.1;Name=WP_000676112.1;Ontology_term=GO:0000271,GO:0019305,GO:0008879;gbkey=CDS;gene=rfbA;go_function=glucose-1-phosphate thymidylyltransferase activity|0008879||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002276675.1;locus_tag=D5F88_RS09175;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_000676112.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 90150 90743 . + . ID=gene-D5F88_RS09180;Name=D5F88_RS09180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09180;old_locus_tag=D5F88_09190 NZ_QYTI01000071.1 Protein Homology CDS 90150 90743 . + 0 ID=cds-WP_000139156.1;Parent=gene-D5F88_RS09180;Dbxref=GenBank:WP_000139156.1;Name=WP_000139156.1;Ontology_term=GO:0016857;gbkey=CDS;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018379055.1;locus_tag=D5F88_RS09180;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase family protein;protein_id=WP_000139156.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 90950 91996 . + . ID=gene-D5F88_RS09185;Name=rfbB;gbkey=Gene;gene=rfbB;gene_biotype=protein_coding;locus_tag=D5F88_RS09185;old_locus_tag=D5F88_09195 NZ_QYTI01000071.1 Protein Homology CDS 90950 91996 . + 0 ID=cds-WP_016502954.1;Parent=gene-D5F88_RS09185;Dbxref=GenBank:WP_016502954.1;Name=WP_016502954.1;Ontology_term=GO:0009225,GO:0019305,GO:0008460;gbkey=CDS;gene=rfbB;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000134275.1;locus_tag=D5F88_RS09185;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_016502954.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 92048 95272 . - . ID=gene-D5F88_RS09190;Name=hylB;gbkey=Gene;gene=hylB;gene_biotype=protein_coding;locus_tag=D5F88_RS09190;old_locus_tag=D5F88_09200 NZ_QYTI01000071.1 Protein Homology CDS 92048 95272 . - 0 ID=cds-WP_124773344.1;Parent=gene-D5F88_RS09190;Dbxref=GenBank:WP_124773344.1;Name=WP_124773344.1;gbkey=CDS;gene=hylB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000403395.1;locus_tag=D5F88_RS09190;product=hyaluronate lyase;protein_id=WP_124773344.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 95491 95973 . + . ID=gene-D5F88_RS09195;Name=D5F88_RS09195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09195;old_locus_tag=D5F88_09205 NZ_QYTI01000071.1 Protein Homology CDS 95491 95973 . + 0 ID=cds-WP_000163512.1;Parent=gene-D5F88_RS09195;Dbxref=GenBank:WP_000163512.1;Name=WP_000163512.1;Ontology_term=GO:0016818,GO:0046872;gbkey=CDS;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285310.1;locus_tag=D5F88_RS09195;product=NUDIX hydrolase;protein_id=WP_000163512.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 95963 96424 . + . ID=gene-D5F88_RS09200;Name=D5F88_RS09200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09200;old_locus_tag=D5F88_09210 NZ_QYTI01000071.1 Protein Homology CDS 95963 96424 . + 0 ID=cds-WP_016502952.1;Parent=gene-D5F88_RS09200;Dbxref=GenBank:WP_016502952.1;Name=WP_016502952.1;Ontology_term=GO:0009132,GO:0016817,GO:0046872;gbkey=CDS;go_function=hydrolase activity%2C acting on acid anhydrides|0016817||IEA,metal ion binding|0046872||IEA;go_process=nucleoside diphosphate metabolic process|0009132||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502952.1;locus_tag=D5F88_RS09200;product=NUDIX hydrolase;protein_id=WP_016502952.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 96516 97706 . + . ID=gene-D5F88_RS09205;Name=D5F88_RS09205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09205;old_locus_tag=D5F88_09215 NZ_QYTI01000071.1 Protein Homology CDS 96516 97706 . + 0 ID=cds-WP_001081535.1;Parent=gene-D5F88_RS09205;Dbxref=GenBank:WP_001081535.1;Name=WP_001081535.1;Ontology_term=GO:0055085,GO:1905887,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA,autoinducer AI-2 transmembrane transport|1905887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001081542.1;locus_tag=D5F88_RS09205;product=AI-2E family transporter;protein_id=WP_001081535.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 97696 98922 . + . ID=gene-D5F88_RS09210;Name=D5F88_RS09210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09210;old_locus_tag=D5F88_09220 NZ_QYTI01000071.1 Protein Homology CDS 97696 98922 . + 0 ID=cds-WP_016502951.1;Parent=gene-D5F88_RS09210;Dbxref=GenBank:WP_016502951.1;Name=WP_016502951.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058602.1;locus_tag=D5F88_RS09210;product=tetratricopeptide repeat protein;protein_id=WP_016502951.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 99032 100714 . + . ID=gene-D5F88_RS09215;Name=alsS;gbkey=Gene;gene=alsS;gene_biotype=protein_coding;locus_tag=D5F88_RS09215;old_locus_tag=D5F88_09225 NZ_QYTI01000071.1 Protein Homology CDS 99032 100714 . + 0 ID=cds-WP_000140344.1;Parent=gene-D5F88_RS09215;Dbxref=GenBank:WP_000140344.1;Name=WP_000140344.1;Ontology_term=GO:0034077,GO:0000287,GO:0003984,GO:0030976;gbkey=CDS;gene=alsS;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=butanediol metabolic process|0034077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632065.1;locus_tag=D5F88_RS09215;product=acetolactate synthase AlsS;protein_id=WP_000140344.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 100728 101447 . + . ID=gene-D5F88_RS09220;Name=budA;gbkey=Gene;gene=budA;gene_biotype=protein_coding;locus_tag=D5F88_RS09220;old_locus_tag=D5F88_09230 NZ_QYTI01000071.1 Protein Homology CDS 100728 101447 . + 0 ID=cds-WP_000005475.1;Parent=gene-D5F88_RS09220;Dbxref=GenBank:WP_000005475.1;Name=WP_000005475.1;Ontology_term=GO:0045151,GO:0047605;gbkey=CDS;gene=budA;go_function=acetolactate decarboxylase activity|0047605||IEA;go_process=acetoin biosynthetic process|0045151||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647746.1;locus_tag=D5F88_RS09220;product=acetolactate decarboxylase;protein_id=WP_000005475.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 101501 103156 . - . ID=gene-D5F88_RS09225;Name=D5F88_RS09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09225;old_locus_tag=D5F88_09235 NZ_QYTI01000071.1 Protein Homology CDS 101501 103156 . - 0 ID=cds-WP_016502950.1;Parent=gene-D5F88_RS09225;Dbxref=GenBank:WP_016502950.1;Name=WP_016502950.1;Ontology_term=GO:0072344,GO:0001968,GO:1990112;gbkey=CDS;go_component=RQC complex|1990112||IEA;go_function=fibronectin binding|0001968||IEA;go_process=rescue of stalled ribosome|0072344||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000006719.1;locus_tag=D5F88_RS09225;product=Rqc2 family fibronectin-binding protein;protein_id=WP_016502950.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 103515 104519 . + . ID=gene-D5F88_RS09230;Name=trpX;gbkey=Gene;gene=trpX;gene_biotype=protein_coding;locus_tag=D5F88_RS09230;old_locus_tag=D5F88_09240 NZ_QYTI01000071.1 Protein Homology CDS 103515 104519 . + 0 ID=cds-WP_000790857.1;Parent=gene-D5F88_RS09230;Dbxref=GenBank:WP_000790857.1;Name=WP_000790857.1;gbkey=CDS;gene=trpX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000790854.1;locus_tag=D5F88_RS09230;product=tryptophan ABC transporter substrate-binding protein;protein_id=WP_000790857.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 104532 105395 . + . ID=gene-D5F88_RS09235;Name=D5F88_RS09235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09235;old_locus_tag=D5F88_09245 NZ_QYTI01000071.1 Protein Homology CDS 104532 105395 . + 0 ID=cds-WP_000587303.1;Parent=gene-D5F88_RS09235;Dbxref=GenBank:WP_000587303.1;Name=WP_000587303.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000587306.1;locus_tag=D5F88_RS09235;product=ABC transporter permease;protein_id=WP_000587303.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 105395 106156 . + . ID=gene-D5F88_RS09240;Name=D5F88_RS09240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09240;old_locus_tag=D5F88_09250 NZ_QYTI01000071.1 Protein Homology CDS 105395 106156 . + 0 ID=cds-WP_000245083.1;Parent=gene-D5F88_RS09240;Dbxref=GenBank:WP_000245083.1;Name=WP_000245083.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480857.1;locus_tag=D5F88_RS09240;product=ABC transporter ATP-binding protein;protein_id=WP_000245083.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 106453 108114 . + . ID=gene-D5F88_RS09245;Name=D5F88_RS09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09245;old_locus_tag=D5F88_09255 NZ_QYTI01000071.1 Protein Homology CDS 106453 108114 . + 0 ID=cds-WP_001280077.1;Parent=gene-D5F88_RS09245;Dbxref=GenBank:WP_001280077.1;Name=WP_001280077.1;Ontology_term=GO:0006364,GO:0006396,GO:0003723,GO:0004521,GO:0004534,GO:0008270,GO:0046872;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA endonuclease activity|0004521||IEA,5'-3' RNA exonuclease activity|0004534||IEA,zinc ion binding|0008270||IEA,metal ion binding|0046872||IEA;go_process=rRNA processing|0006364||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646201.1;locus_tag=D5F88_RS09245;product=ribonuclease J;protein_id=WP_001280077.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 108171 108959 . + . ID=gene-D5F88_RS09250;Name=D5F88_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09250;old_locus_tag=D5F88_09260 NZ_QYTI01000071.1 Protein Homology CDS 108171 108959 . + 0 ID=cds-WP_000863790.1;Parent=gene-D5F88_RS09250;Dbxref=GenBank:WP_000863790.1;Name=WP_000863790.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000863793.1;locus_tag=D5F88_RS09250;product=alpha/beta hydrolase;protein_id=WP_000863790.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 109049 109759 . + . ID=gene-D5F88_RS09255;Name=D5F88_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09255;old_locus_tag=D5F88_09265 NZ_QYTI01000071.1 Protein Homology CDS 109049 109759 . + 0 ID=cds-WP_001259484.1;Parent=gene-D5F88_RS09255;Dbxref=GenBank:WP_001259484.1;Name=WP_001259484.1;Ontology_term=GO:0006508,GO:0004222,GO:0008270,GO:0031012;gbkey=CDS;go_component=extracellular matrix|0031012||IEA;go_function=metalloendopeptidase activity|0004222||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001259490.1;locus_tag=D5F88_RS09255;product=matrixin family metalloprotease;protein_id=WP_001259484.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 109997 110668 . + . ID=gene-D5F88_RS09260;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=D5F88_RS09260;old_locus_tag=D5F88_09270 NZ_QYTI01000071.1 Protein Homology CDS 109997 110668 . + 0 ID=cds-WP_000343877.1;Parent=gene-D5F88_RS09260;Dbxref=GenBank:WP_000343877.1;Name=WP_000343877.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiA;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343878.1;locus_tag=D5F88_RS09260;product=ribose-5-phosphate isomerase RpiA;protein_id=WP_000343877.1;transl_table=11 NZ_QYTI01000071.1 RefSeq gene 110725 111453 . + . ID=gene-D5F88_RS09265;Name=D5F88_RS09265;end_range=111453,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09265;old_locus_tag=D5F88_09275;partial=true NZ_QYTI01000071.1 Protein Homology CDS 110725 111453 . + 0 ID=cds-WP_124773346.1;Parent=gene-D5F88_RS09265;Dbxref=GenBank:WP_124773346.1;Name=WP_124773346.1;Ontology_term=GO:0009117,GO:0043094,GO:0000287,GO:0008973;end_range=111453,.;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,phosphopentomutase activity|0008973||IEA;go_process=nucleotide metabolic process|0009117||IEA,metabolic compound salvage|0043094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019770913.1;locus_tag=D5F88_RS09265;partial=true;product=phosphopentomutase;protein_id=WP_124773346.1;transl_table=11 ##sequence-region NZ_QYTI01000072.1 1 45594 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000072.1 RefSeq region 1 45594 . + . ID=NZ_QYTI01000072.1:1..45594;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000072.1 RefSeq gene 1 1265 . + . ID=gene-D5F88_RS09270;Name=gtfB;gbkey=Gene;gene=gtfB;gene_biotype=protein_coding;locus_tag=D5F88_RS09270;old_locus_tag=D5F88_09280;partial=true;start_range=.,1 NZ_QYTI01000072.1 Protein Homology CDS 1 1265 . + 2 ID=cds-WP_124773349.1;Parent=gene-D5F88_RS09270;Dbxref=GenBank:WP_124773349.1;Name=WP_124773349.1;Ontology_term=GO:0031647;gbkey=CDS;gene=gtfB;go_process=regulation of protein stability|0031647||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646253.1;locus_tag=D5F88_RS09270;partial=true;product=accessory Sec system glycosylation chaperone GtfB;protein_id=WP_124773349.1;start_range=.,1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 1276 1464 . + . ID=gene-D5F88_RS09275;Name=D5F88_RS09275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09275;old_locus_tag=D5F88_09285 NZ_QYTI01000072.1 Protein Homology CDS 1276 1464 . + 0 ID=cds-WP_000728848.1;Parent=gene-D5F88_RS09275;Dbxref=GenBank:WP_000728848.1;Name=WP_000728848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000728848.1;locus_tag=D5F88_RS09275;product=hypothetical protein;protein_id=WP_000728848.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 1548 2012 . + . ID=gene-D5F88_RS09280;Name=D5F88_RS09280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09280;old_locus_tag=D5F88_09290 NZ_QYTI01000072.1 Protein Homology CDS 1548 2012 . + 0 ID=cds-WP_016481020.1;Parent=gene-D5F88_RS09280;Dbxref=GenBank:WP_016481020.1;Name=WP_016481020.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649420.1;locus_tag=D5F88_RS09280;product=8-oxo-dGTP diphosphatase;protein_id=WP_016481020.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 2056 3528 . - . ID=gene-D5F88_RS09285;Name=D5F88_RS09285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09285;old_locus_tag=D5F88_09295 NZ_QYTI01000072.1 Protein Homology CDS 2056 3528 . - 0 ID=cds-WP_000416073.1;Parent=gene-D5F88_RS09285;Dbxref=GenBank:WP_000416073.1;Name=WP_000416073.1;Ontology_term=GO:0015833,GO:0055085,GO:0022857,GO:1904680,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA,peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771948.1;locus_tag=D5F88_RS09285;product=peptide MFS transporter;protein_id=WP_000416073.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 3759 4595 . - . ID=gene-D5F88_RS09290;Name=D5F88_RS09290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09290;old_locus_tag=D5F88_09300 NZ_QYTI01000072.1 Protein Homology CDS 3759 4595 . - 0 ID=cds-WP_001035401.1;Parent=gene-D5F88_RS09290;Dbxref=GenBank:WP_001035401.1;Name=WP_001035401.1;Ontology_term=GO:0008643,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001035402.1;locus_tag=D5F88_RS09290;product=sugar ABC transporter permease;protein_id=WP_001035401.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 4595 5965 . - . ID=gene-D5F88_RS09295;Name=D5F88_RS09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09295;old_locus_tag=D5F88_09305 NZ_QYTI01000072.1 Protein Homology CDS 4595 5965 . - 0 ID=cds-WP_001035541.1;Parent=gene-D5F88_RS09295;Dbxref=GenBank:WP_001035541.1;Name=WP_001035541.1;Ontology_term=GO:0008643,GO:0055085,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001035543.1;locus_tag=D5F88_RS09295;product=carbohydrate ABC transporter permease;protein_id=WP_001035541.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 6063 7310 . - . ID=gene-D5F88_RS09300;Name=D5F88_RS09300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09300;old_locus_tag=D5F88_09310 NZ_QYTI01000072.1 Protein Homology CDS 6063 7310 . - 0 ID=cds-WP_000414616.1;Parent=gene-D5F88_RS09300;Dbxref=GenBank:WP_000414616.1;Name=WP_000414616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768369.1;locus_tag=D5F88_RS09300;product=extracellular solute-binding protein;protein_id=WP_000414616.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 7566 8588 . + . ID=gene-D5F88_RS09305;Name=D5F88_RS09305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09305;old_locus_tag=D5F88_09315 NZ_QYTI01000072.1 Protein Homology CDS 7566 8588 . + 0 ID=cds-WP_016481019.1;Parent=gene-D5F88_RS09305;Dbxref=GenBank:WP_016481019.1;Name=WP_016481019.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767614.1;locus_tag=D5F88_RS09305;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_016481019.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 8716 10212 . + . ID=gene-D5F88_RS09310;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=D5F88_RS09310;old_locus_tag=D5F88_09320 NZ_QYTI01000072.1 Protein Homology CDS 8716 10212 . + 0 ID=cds-WP_000745458.1;Parent=gene-D5F88_RS09310;Dbxref=GenBank:WP_000745458.1;Name=WP_000745458.1;Ontology_term=GO:0005980,GO:0004134;gbkey=CDS;gene=malQ;go_function=4-alpha-glucanotransferase activity|0004134||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650672.1;locus_tag=D5F88_RS09310;product=4-alpha-glucanotransferase;protein_id=WP_000745458.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 10224 12488 . + . ID=gene-D5F88_RS09315;Name=glgP;gbkey=Gene;gene=glgP;gene_biotype=protein_coding;locus_tag=D5F88_RS09315;old_locus_tag=D5F88_09325 NZ_QYTI01000072.1 Protein Homology CDS 10224 12488 . + 0 ID=cds-WP_124773351.1;Parent=gene-D5F88_RS09315;Dbxref=GenBank:WP_124773351.1;Name=WP_124773351.1;Ontology_term=GO:0005975,GO:0004645,GO:0030170;gbkey=CDS;gene=glgP;go_function=1%2C4-alpha-oligoglucan phosphorylase activity|0004645||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000197732.1;locus_tag=D5F88_RS09315;product=glycogen/starch/alpha-glucan family phosphorylase;protein_id=WP_124773351.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 12902 14275 . + . ID=gene-D5F88_RS09325;Name=D5F88_RS09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09325;old_locus_tag=D5F88_09335 NZ_QYTI01000072.1 Protein Homology CDS 12902 14275 . + 0 ID=cds-WP_000914221.1;Parent=gene-D5F88_RS09325;Dbxref=GenBank:WP_000914221.1;Name=WP_000914221.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000914222.1;locus_tag=D5F88_RS09325;product=MFS transporter;protein_id=WP_000914221.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 14430 14735 . - . ID=gene-D5F88_RS09330;Name=D5F88_RS09330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09330;old_locus_tag=D5F88_09340 NZ_QYTI01000072.1 Protein Homology CDS 14430 14735 . - 0 ID=cds-WP_000220571.1;Parent=gene-D5F88_RS09330;Dbxref=GenBank:WP_000220571.1;Name=WP_000220571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000220570.1;locus_tag=D5F88_RS09330;product=hypothetical protein;protein_id=WP_000220571.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 14898 15884 . + . ID=gene-D5F88_RS09335;Name=trhO;gbkey=Gene;gene=trhO;gene_biotype=protein_coding;gene_synonym=yceA;locus_tag=D5F88_RS09335;old_locus_tag=D5F88_09345 NZ_QYTI01000072.1 Protein Homology CDS 14898 15884 . + 0 ID=cds-WP_001290916.1;Parent=gene-D5F88_RS09335;Dbxref=GenBank:WP_001290916.1;Name=WP_001290916.1;Ontology_term=GO:0006400;gbkey=CDS;gene=trhO;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001290916.1;locus_tag=D5F88_RS09335;product=oxygen-dependent tRNA uridine(34) hydroxylase TrhO;protein_id=WP_001290916.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 15921 17048 . - . ID=gene-D5F88_RS09340;Name=D5F88_RS09340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09340;old_locus_tag=D5F88_09350 NZ_QYTI01000072.1 Protein Homology CDS 15921 17048 . - 0 ID=cds-WP_016503038.1;Parent=gene-D5F88_RS09340;Dbxref=GenBank:WP_016503038.1;Name=WP_016503038.1;Ontology_term=GO:0000166,GO:0016491;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000683737.1;locus_tag=D5F88_RS09340;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_016503038.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 17152 18171 . + . ID=gene-D5F88_RS09345;Name=D5F88_RS09345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09345;old_locus_tag=D5F88_09355 NZ_QYTI01000072.1 Protein Homology CDS 17152 18171 . + 0 ID=cds-WP_162138208.1;Parent=gene-D5F88_RS09345;Dbxref=GenBank:WP_162138208.1;Name=WP_162138208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001932930.1;locus_tag=D5F88_RS09345;product=ammonium transporter;protein_id=WP_162138208.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 18496 19302 . + . ID=gene-D5F88_RS09350;Name=D5F88_RS09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09350;old_locus_tag=D5F88_09360 NZ_QYTI01000072.1 Protein Homology CDS 18496 19302 . + 0 ID=cds-WP_000037656.1;Parent=gene-D5F88_RS09350;Dbxref=GenBank:WP_000037656.1;Name=WP_000037656.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000037660.1;locus_tag=D5F88_RS09350;product=transporter substrate-binding domain-containing protein;protein_id=WP_000037656.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 19385 19888 . + . ID=gene-D5F88_RS09355;Name=D5F88_RS09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09355;old_locus_tag=D5F88_09365 NZ_QYTI01000072.1 Protein Homology CDS 19385 19888 . + 0 ID=cds-WP_000249813.1;Parent=gene-D5F88_RS09355;Dbxref=GenBank:WP_000249813.1;Name=WP_000249813.1;Ontology_term=GO:0046872,GO:0051536;gbkey=CDS;go_function=metal ion binding|0046872||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480102.1;locus_tag=D5F88_RS09355;product=YkgJ family cysteine cluster protein;protein_id=WP_000249813.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 19992 20168 . + . ID=gene-D5F88_RS09360;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=D5F88_RS09360;old_locus_tag=D5F88_09370 NZ_QYTI01000072.1 Protein Homology CDS 19992 20168 . + 0 ID=cds-WP_000048058.1;Parent=gene-D5F88_RS09360;Dbxref=GenBank:WP_000048058.1;Name=WP_000048058.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsU;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002884573.1;locus_tag=D5F88_RS09360;product=30S ribosomal protein S21;protein_id=WP_000048058.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 20266 20643 . - . ID=gene-D5F88_RS09365;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=D5F88_RS09365;old_locus_tag=D5F88_09375 NZ_QYTI01000072.1 Protein Homology CDS 20266 20643 . - 0 ID=cds-WP_000588846.1;Parent=gene-D5F88_RS09365;Dbxref=GenBank:WP_000588846.1;Name=WP_000588846.1;Ontology_term=GO:0006810,GO:0008381,GO:0016020;gbkey=CDS;gene=mscL;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000588846.1;locus_tag=D5F88_RS09365;product=large conductance mechanosensitive channel protein MscL;protein_id=WP_000588846.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 20833 22641 . + . ID=gene-D5F88_RS09370;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=D5F88_RS09370;old_locus_tag=D5F88_09380 NZ_QYTI01000072.1 Protein Homology CDS 20833 22641 . + 0 ID=cds-WP_086163433.1;Parent=gene-D5F88_RS09370;Dbxref=GenBank:WP_086163433.1;Name=WP_086163433.1;Ontology_term=GO:0006269,GO:0003899;gbkey=CDS;gene=dnaG;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA replication%2C synthesis of primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012560591.1;locus_tag=D5F88_RS09370;product=DNA primase;protein_id=WP_086163433.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 22649 23758 . + . ID=gene-D5F88_RS09375;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=D5F88_RS09375;old_locus_tag=D5F88_09385 NZ_QYTI01000072.1 Protein Homology CDS 22649 23758 . + 0 ID=cds-WP_000818341.1;Parent=gene-D5F88_RS09375;Dbxref=GenBank:WP_000818341.1;Name=WP_000818341.1;Ontology_term=GO:0006355,GO:0003677,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019787874.1;locus_tag=D5F88_RS09375;product=RNA polymerase sigma factor RpoD;protein_id=WP_000818341.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 23866 24207 . + . ID=gene-D5F88_RS09380;Name=D5F88_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09380;old_locus_tag=D5F88_09390 NZ_QYTI01000072.1 Protein Homology CDS 23866 24207 . + 0 ID=cds-WP_000005643.1;Parent=gene-D5F88_RS09380;Dbxref=GenBank:WP_000005643.1;Name=WP_000005643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017766829.1;locus_tag=D5F88_RS09380;product=metal-sulfur cluster assembly factor;protein_id=WP_000005643.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 24297 25151 . + . ID=gene-D5F88_RS09385;Name=rfbD;gbkey=Gene;gene=rfbD;gene_biotype=protein_coding;locus_tag=D5F88_RS09385;old_locus_tag=D5F88_09395 NZ_QYTI01000072.1 Protein Homology CDS 24297 25151 . + 0 ID=cds-WP_086163415.1;Parent=gene-D5F88_RS09385;Dbxref=GenBank:WP_086163415.1;Name=WP_086163415.1;Ontology_term=GO:0009243,GO:0019305,GO:0008831;gbkey=CDS;gene=rfbD;go_function=dTDP-4-dehydrorhamnose reductase activity|0008831||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647909.1;locus_tag=D5F88_RS09385;product=dTDP-4-dehydrorhamnose reductase;protein_id=WP_086163415.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 25268 26422 . + . ID=gene-D5F88_RS09390;Name=cps2T;gbkey=Gene;gene=cps2T;gene_biotype=protein_coding;gene_synonym=wchF;locus_tag=D5F88_RS09390;old_locus_tag=D5F88_09400 NZ_QYTI01000072.1 Protein Homology CDS 25268 26422 . + 0 ID=cds-WP_001154392.1;Parent=gene-D5F88_RS09390;Dbxref=GenBank:WP_001154392.1;Name=WP_001154392.1;Ontology_term=GO:0016757;gbkey=CDS;gene=cps2T;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001154391.1;locus_tag=D5F88_RS09390;product=beta 1-4 rhamnosyltransferase Cps2T;protein_id=WP_001154392.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 26412 27353 . + . ID=gene-D5F88_RS09395;Name=D5F88_RS09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09395;old_locus_tag=D5F88_09405 NZ_QYTI01000072.1 Protein Homology CDS 26412 27353 . + 0 ID=cds-WP_000867340.1;Parent=gene-D5F88_RS09395;Dbxref=GenBank:WP_000867340.1;Name=WP_000867340.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503035.1;locus_tag=D5F88_RS09395;product=glycosyltransferase family 2 protein;protein_id=WP_000867340.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 27355 28086 . + . ID=gene-D5F88_RS09400;Name=D5F88_RS09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09400;old_locus_tag=D5F88_09410 NZ_QYTI01000072.1 Protein Homology CDS 27355 28086 . + 0 ID=cds-WP_000976127.1;Parent=gene-D5F88_RS09400;Dbxref=GenBank:WP_000976127.1;Name=WP_000976127.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000976126.1;locus_tag=D5F88_RS09400;product=glycosyltransferase family 2 protein;protein_id=WP_000976127.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 28083 28436 . + . ID=gene-D5F88_RS09405;Name=D5F88_RS09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09405;old_locus_tag=D5F88_09415 NZ_QYTI01000072.1 Protein Homology CDS 28083 28436 . + 0 ID=cds-WP_000050394.1;Parent=gene-D5F88_RS09405;Dbxref=GenBank:WP_000050394.1;Name=WP_000050394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000050393.1;locus_tag=D5F88_RS09405;product=DUF2304 domain-containing protein;protein_id=WP_000050394.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 28429 30162 . + . ID=gene-D5F88_RS09410;Name=D5F88_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09410;old_locus_tag=D5F88_09420 NZ_QYTI01000072.1 Protein Homology CDS 28429 30162 . + 0 ID=cds-WP_086163414.1;Parent=gene-D5F88_RS09410;Dbxref=GenBank:WP_086163414.1;Name=WP_086163414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000037459.1;locus_tag=D5F88_RS09410;product=SpaA isopeptide-forming pilin-related protein;protein_id=WP_086163414.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 30187 31011 . + . ID=gene-D5F88_RS09415;Name=D5F88_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09415;old_locus_tag=D5F88_09425 NZ_QYTI01000072.1 Protein Homology CDS 30187 31011 . + 0 ID=cds-WP_015058658.1;Parent=gene-D5F88_RS09415;Dbxref=GenBank:WP_015058658.1;Name=WP_015058658.1;Ontology_term=GO:0009103,GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000661828.1;locus_tag=D5F88_RS09415;product=LicD family protein;protein_id=WP_015058658.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 31011 31733 . + . ID=gene-D5F88_RS09420;Name=D5F88_RS09420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09420;old_locus_tag=D5F88_09430 NZ_QYTI01000072.1 Protein Homology CDS 31011 31733 . + 0 ID=cds-WP_000981011.1;Parent=gene-D5F88_RS09420;Dbxref=GenBank:WP_000981011.1;Name=WP_000981011.1;Ontology_term=GO:0070567;gbkey=CDS;go_function=cytidylyltransferase activity|0070567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645952.1;locus_tag=D5F88_RS09420;product=IspD/TarI family cytidylyltransferase;protein_id=WP_000981011.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 31733 32791 . + . ID=gene-D5F88_RS09425;Name=D5F88_RS09425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09425;old_locus_tag=D5F88_09435 NZ_QYTI01000072.1 Protein Homology CDS 31733 32791 . + 0 ID=cds-WP_086163413.1;Parent=gene-D5F88_RS09425;Dbxref=GenBank:WP_086163413.1;Name=WP_086163413.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648247.1;locus_tag=D5F88_RS09425;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_086163413.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 32793 33728 . + . ID=gene-D5F88_RS09430;Name=D5F88_RS09430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09430;old_locus_tag=D5F88_09440 NZ_QYTI01000072.1 Protein Homology CDS 32793 33728 . + 0 ID=cds-WP_086163412.1;Parent=gene-D5F88_RS09430;Dbxref=GenBank:WP_086163412.1;Name=WP_086163412.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000241097.1;locus_tag=D5F88_RS09430;product=glycosyltransferase family 2 protein;protein_id=WP_086163412.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 33737 34684 . + . ID=gene-D5F88_RS09435;Name=D5F88_RS09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09435;old_locus_tag=D5F88_09445 NZ_QYTI01000072.1 Protein Homology CDS 33737 34684 . + 0 ID=cds-WP_180383575.1;Parent=gene-D5F88_RS09435;Dbxref=GenBank:WP_180383575.1;Name=WP_180383575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000241108.1;locus_tag=D5F88_RS09435;product=glycosyltransferase;protein_id=WP_180383575.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 34686 36050 . + . ID=gene-D5F88_RS09440;Name=D5F88_RS09440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09440;old_locus_tag=D5F88_09450 NZ_QYTI01000072.1 Protein Homology CDS 34686 36050 . + 0 ID=cds-WP_086163411.1;Parent=gene-D5F88_RS09440;Dbxref=GenBank:WP_086163411.1;Name=WP_086163411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001049705.1;locus_tag=D5F88_RS09440;product=DUF2142 domain-containing protein;protein_id=WP_086163411.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 36050 37474 . + . ID=gene-D5F88_RS09445;Name=D5F88_RS09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09445;old_locus_tag=D5F88_09455 NZ_QYTI01000072.1 Protein Homology CDS 36050 37474 . + 0 ID=cds-WP_086163410.1;Parent=gene-D5F88_RS09445;Dbxref=GenBank:WP_086163410.1;Name=WP_086163410.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768353.1;locus_tag=D5F88_RS09445;product=oligosaccharide flippase family protein;protein_id=WP_086163410.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 37471 38319 . + . ID=gene-D5F88_RS09450;Name=D5F88_RS09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09450;old_locus_tag=D5F88_09460 NZ_QYTI01000072.1 Protein Homology CDS 37471 38319 . + 0 ID=cds-WP_086163409.1;Parent=gene-D5F88_RS09450;Dbxref=GenBank:WP_086163409.1;Name=WP_086163409.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000875978.1;locus_tag=D5F88_RS09450;product=glycosyltransferase;protein_id=WP_086163409.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 38309 39457 . + . ID=gene-D5F88_RS09455;Name=D5F88_RS09455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09455;old_locus_tag=D5F88_09465 NZ_QYTI01000072.1 Protein Homology CDS 38309 39457 . + 0 ID=cds-WP_086163408.1;Parent=gene-D5F88_RS09455;Dbxref=GenBank:WP_086163408.1;Name=WP_086163408.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000428970.1;locus_tag=D5F88_RS09455;product=glycosyltransferase family 4 protein;protein_id=WP_086163408.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 39738 40010 . + . ID=gene-D5F88_RS09460;Name=D5F88_RS09460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09460;old_locus_tag=D5F88_09470 NZ_QYTI01000072.1 Protein Homology CDS 39738 40010 . + 0 ID=cds-WP_000389767.1;Parent=gene-D5F88_RS09460;Dbxref=GenBank:WP_000389767.1;Name=WP_000389767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000389766.1;locus_tag=D5F88_RS09460;product=hypothetical protein;protein_id=WP_000389767.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 39994 40563 . + . ID=gene-D5F88_RS09465;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=D5F88_RS09465;old_locus_tag=D5F88_09475 NZ_QYTI01000072.1 Protein Homology CDS 39994 40563 . + 0 ID=cds-WP_016503026.1;Parent=gene-D5F88_RS09465;Dbxref=GenBank:WP_016503026.1;Name=WP_016503026.1;Ontology_term=GO:0006465,GO:0009306,GO:0004252,GO:0016020;gbkey=CDS;gene=lepB;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000828634.1;locus_tag=D5F88_RS09465;product=signal peptidase I;protein_id=WP_016503026.1;transl_table=11 NZ_QYTI01000072.1 RefSeq gene 40582 45594 . + . ID=gene-D5F88_RS09470;Name=D5F88_RS09470;end_range=45594,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09470;old_locus_tag=D5F88_09480;partial=true NZ_QYTI01000072.1 Protein Homology CDS 40582 45594 . + 0 ID=cds-WP_260424979.1;Parent=gene-D5F88_RS09470;Dbxref=GenBank:WP_260424979.1;Name=WP_260424979.1;end_range=45594,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000913277.1;locus_tag=D5F88_RS09470;partial=true;product=InlB B-repeat-containing protein;protein_id=WP_260424979.1;transl_table=11 ##sequence-region NZ_QYTI01000073.1 1 1083 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000073.1 RefSeq region 1 1083 . + . ID=NZ_QYTI01000073.1:1..1083;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000073.1 RefSeq gene 1 241 . + . ID=gene-D5F88_RS09480;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=D5F88_RS09480;old_locus_tag=D5F88_09490;partial=true;start_range=.,1 NZ_QYTI01000073.1 Protein Homology CDS 1 241 . + 1 ID=cds-WP_124773353.1;Parent=gene-D5F88_RS09480;Dbxref=GenBank:WP_124773353.1;Name=WP_124773353.1;Ontology_term=GO:0006364;gbkey=CDS;gene=ruvX;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003090938.1;locus_tag=D5F88_RS09480;partial=true;product=Holliday junction resolvase RuvX;protein_id=WP_124773353.1;start_range=.,1;transl_table=11 NZ_QYTI01000073.1 RefSeq gene 267 584 . + . ID=gene-D5F88_RS09485;Name=D5F88_RS09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09485;old_locus_tag=D5F88_09495 NZ_QYTI01000073.1 Protein Homology CDS 267 584 . + 0 ID=cds-WP_086163528.1-2;Parent=gene-D5F88_RS09485;Dbxref=GenBank:WP_086163528.1;Name=WP_086163528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015912065.1;locus_tag=D5F88_RS09485;product=DUF1292 domain-containing protein;protein_id=WP_086163528.1;transl_table=11 NZ_QYTI01000073.1 RefSeq gene 666 788 . + . ID=gene-D5F88_RS11850;Name=D5F88_RS11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11850;old_locus_tag=D5F88_09500 NZ_QYTI01000073.1 Protein Homology CDS 666 788 . + 0 ID=cds-WP_001285712.1-2;Parent=gene-D5F88_RS11850;Dbxref=GenBank:WP_001285712.1;Name=WP_001285712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001285712.1;locus_tag=D5F88_RS11850;product=hypothetical protein;protein_id=WP_001285712.1;transl_table=11 NZ_QYTI01000073.1 RefSeq pseudogene 834 1083 . + . ID=gene-D5F88_RS09495;Name=D5F88_RS09495;end_range=1083,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS09495;old_locus_tag=D5F88_09505;partial=true;pseudo=true NZ_QYTI01000073.1 Protein Homology CDS 834 1083 . + 0 ID=cds-D5F88_RS09495;Parent=gene-D5F88_RS09495;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=1083,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000230047.1;locus_tag=D5F88_RS09495;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000074.1 1 47048 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000074.1 RefSeq region 1 47048 . + . ID=NZ_QYTI01000074.1:1..47048;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000074.1 RefSeq gene 78 1595 . + . ID=gene-D5F88_RS09500;Name=D5F88_RS09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09500;old_locus_tag=D5F88_09510 NZ_QYTI01000074.1 Protein Homology CDS 78 1595 . + 0 ID=cds-WP_124759204.1;Parent=gene-D5F88_RS09500;Dbxref=GenBank:WP_124759204.1;Name=WP_124759204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000728388.1;locus_tag=D5F88_RS09500;product=SpaH/EbpB family LPXTG-anchored major pilin;protein_id=WP_124759204.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 1633 2508 . + . ID=gene-D5F88_RS09505;Name=D5F88_RS09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09505;old_locus_tag=D5F88_09515 NZ_QYTI01000074.1 Protein Homology CDS 1633 2508 . + 0 ID=cds-WP_032459395.1;Parent=gene-D5F88_RS09505;Dbxref=GenBank:WP_032459395.1;Name=WP_032459395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481003.1;locus_tag=D5F88_RS09505;product=class C sortase;protein_id=WP_032459395.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 2498 3169 . + . ID=gene-D5F88_RS09510;Name=D5F88_RS09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09510;old_locus_tag=D5F88_09520 NZ_QYTI01000074.1 Protein Homology CDS 2498 3169 . + 0 ID=cds-WP_086163407.1;Parent=gene-D5F88_RS09510;Dbxref=GenBank:WP_086163407.1;Name=WP_086163407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000639475.1;locus_tag=D5F88_RS09510;product=hypothetical protein;protein_id=WP_086163407.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 3162 3761 . + . ID=gene-D5F88_RS09515;Name=D5F88_RS09515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09515;old_locus_tag=D5F88_09525 NZ_QYTI01000074.1 Protein Homology CDS 3162 3761 . + 0 ID=cds-WP_086163406.1;Parent=gene-D5F88_RS09515;Dbxref=GenBank:WP_086163406.1;Name=WP_086163406.1;Ontology_term=GO:0006508,GO:0008234;gbkey=CDS;go_function=cysteine-type peptidase activity|0008234||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000621247.1;locus_tag=D5F88_RS09515;product=sortase;protein_id=WP_086163406.1;transl_table=11 NZ_QYTI01000074.1 cmsearch riboswitch 3830 3975 . + . ID=id-NZ_QYTI01000074.1:3830..3975;Dbxref=RFAM:RF00050;Note=FMN riboswitch;bound_moiety=flavin mononucleotide;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_QYTI01000074.1 RefSeq gene 4045 4629 . + . ID=gene-D5F88_RS09520;Name=D5F88_RS09520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09520;old_locus_tag=D5F88_09530 NZ_QYTI01000074.1 Protein Homology CDS 4045 4629 . + 0 ID=cds-WP_000185809.1;Parent=gene-D5F88_RS09520;Dbxref=GenBank:WP_000185809.1;Name=WP_000185809.1;Ontology_term=GO:0032218,GO:0032217;gbkey=CDS;go_function=riboflavin transmembrane transporter activity|0032217||IEA;go_process=riboflavin transport|0032218||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000185809.1;locus_tag=D5F88_RS09520;product=ECF transporter S component;protein_id=WP_000185809.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 4610 5251 . + . ID=gene-D5F88_RS09525;Name=D5F88_RS09525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09525;old_locus_tag=D5F88_09535 NZ_QYTI01000074.1 Protein Homology CDS 4610 5251 . + 0 ID=cds-WP_086163405.1;Parent=gene-D5F88_RS09525;Dbxref=GenBank:WP_086163405.1;Name=WP_086163405.1;Ontology_term=GO:0006629,GO:1901137,GO:0016791,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphatase activity|0016791||IEA;go_process=lipid metabolic process|0006629||IEA,carbohydrate derivative biosynthetic process|1901137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000952717.1;locus_tag=D5F88_RS09525;product=phosphatase PAP2 family protein;protein_id=WP_086163405.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 5344 6279 . + . ID=gene-D5F88_RS09530;Name=D5F88_RS09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09530;old_locus_tag=D5F88_09540 NZ_QYTI01000074.1 Protein Homology CDS 5344 6279 . + 0 ID=cds-WP_000747789.1;Parent=gene-D5F88_RS09530;Dbxref=GenBank:WP_000747789.1;Name=WP_000747789.1;Note=This family includes YhcC from E. coli K-12%2C an uncharacterized radical SAM protein.;Ontology_term=GO:0051536,GO:1904047;gbkey=CDS;go_function=iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000747785.1;locus_tag=D5F88_RS09530;product=TIGR01212 family radical SAM protein;protein_id=WP_000747789.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 6272 6838 . + . ID=gene-D5F88_RS09535;Name=D5F88_RS09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09535;old_locus_tag=D5F88_09545 NZ_QYTI01000074.1 Protein Homology CDS 6272 6838 . + 0 ID=cds-WP_000596036.1;Parent=gene-D5F88_RS09535;Dbxref=GenBank:WP_000596036.1;Name=WP_000596036.1;Ontology_term=GO:0008033,GO:0032259,GO:0004808,GO:0008757,GO:1904047;gbkey=CDS;go_function=tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity|0004808||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA processing|0008033||IEA,methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000596040.1;locus_tag=D5F88_RS09535;product=tRNA (mnm(5)s(2)U34)-methyltransferase;protein_id=WP_000596036.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 7018 8352 . + . ID=gene-D5F88_RS09540;Name=D5F88_RS09540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09540;old_locus_tag=D5F88_09550 NZ_QYTI01000074.1 Protein Homology CDS 7018 8352 . + 0 ID=cds-WP_000389986.1;Parent=gene-D5F88_RS09540;Dbxref=GenBank:WP_000389986.1;Name=WP_000389986.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000389990.1;locus_tag=D5F88_RS09540;product=hemolysin family protein;protein_id=WP_000389986.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 8420 9208 . + . ID=gene-D5F88_RS09545;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=D5F88_RS09545;old_locus_tag=D5F88_09555 NZ_QYTI01000074.1 Protein Homology CDS 8420 9208 . + 0 ID=cds-WP_000807697.1;Parent=gene-D5F88_RS09545;Dbxref=GenBank:WP_000807697.1;Name=WP_000807697.1;Ontology_term=GO:0043365;gbkey=CDS;gene=pflA;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645131.1;locus_tag=D5F88_RS09545;product=pyruvate formate-lyase-activating protein;protein_id=WP_000807697.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 9325 10260 . + . ID=gene-D5F88_RS09550;Name=D5F88_RS09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09550;old_locus_tag=D5F88_09560 NZ_QYTI01000074.1 Protein Homology CDS 9325 10260 . + 0 ID=cds-WP_016503021.1;Parent=gene-D5F88_RS09550;Dbxref=GenBank:WP_016503021.1;Name=WP_016503021.1;Ontology_term=GO:0004427;gbkey=CDS;go_function=inorganic diphosphate phosphatase activity|0004427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000036024.1;locus_tag=D5F88_RS09550;product=manganese-dependent inorganic pyrophosphatase;protein_id=WP_016503021.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 10320 10973 . + . ID=gene-D5F88_RS09555;Name=D5F88_RS09555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09555;old_locus_tag=D5F88_09565 NZ_QYTI01000074.1 Protein Homology CDS 10320 10973 . + 0 ID=cds-WP_000604060.1;Parent=gene-D5F88_RS09555;Dbxref=GenBank:WP_000604060.1;Name=WP_000604060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480997.1;locus_tag=D5F88_RS09555;product=DUF1803 domain-containing protein;protein_id=WP_000604060.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 11003 12004 . - . ID=gene-D5F88_RS09560;Name=D5F88_RS09560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09560;old_locus_tag=D5F88_09570 NZ_QYTI01000074.1 Protein Homology CDS 11003 12004 . - 0 ID=cds-WP_000615142.1;Parent=gene-D5F88_RS09560;Dbxref=GenBank:WP_000615142.1;Name=WP_000615142.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480996.1;locus_tag=D5F88_RS09560;product=FecCD family ABC transporter permease;protein_id=WP_000615142.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 12001 13026 . - . ID=gene-D5F88_RS09565;Name=D5F88_RS09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09565;old_locus_tag=D5F88_09575 NZ_QYTI01000074.1 Protein Homology CDS 12001 13026 . - 0 ID=cds-WP_016503020.1;Parent=gene-D5F88_RS09565;Dbxref=GenBank:WP_016503020.1;Name=WP_016503020.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000471515.1;locus_tag=D5F88_RS09565;product=FecCD family ABC transporter permease;protein_id=WP_016503020.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 13042 13974 . - . ID=gene-D5F88_RS09570;Name=D5F88_RS09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09570;old_locus_tag=D5F88_09580 NZ_QYTI01000074.1 Protein Homology CDS 13042 13974 . - 0 ID=cds-WP_086163404.1;Parent=gene-D5F88_RS09570;Dbxref=GenBank:WP_086163404.1;Name=WP_086163404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000719452.1;locus_tag=D5F88_RS09570;product=ABC transporter substrate-binding protein;protein_id=WP_086163404.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 13998 14792 . - . ID=gene-D5F88_RS09575;Name=D5F88_RS09575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09575;old_locus_tag=D5F88_09585 NZ_QYTI01000074.1 Protein Homology CDS 13998 14792 . - 0 ID=cds-WP_000018231.1;Parent=gene-D5F88_RS09575;Dbxref=GenBank:WP_000018231.1;Name=WP_000018231.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000018231.1;locus_tag=D5F88_RS09575;product=ABC transporter ATP-binding protein;protein_id=WP_000018231.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 14948 16402 . - . ID=gene-D5F88_RS09580;Name=D5F88_RS09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09580;old_locus_tag=D5F88_09590 NZ_QYTI01000074.1 Protein Homology CDS 14948 16402 . - 0 ID=cds-WP_086163403.1;Parent=gene-D5F88_RS09580;Dbxref=GenBank:WP_086163403.1;Name=WP_086163403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000628279.1;locus_tag=D5F88_RS09580;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase;protein_id=WP_086163403.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 16526 18160 . + . ID=gene-D5F88_RS09585;Name=D5F88_RS09585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09585;old_locus_tag=D5F88_09595 NZ_QYTI01000074.1 Protein Homology CDS 16526 18160 . + 0 ID=cds-WP_016503018.1;Parent=gene-D5F88_RS09585;Dbxref=GenBank:WP_016503018.1;Name=WP_016503018.1;Ontology_term=GO:0009252,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000080010.1;locus_tag=D5F88_RS09585;product=putative polysaccharide biosynthesis protein;protein_id=WP_016503018.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 18295 19515 . + . ID=gene-D5F88_RS09590;Name=pepT;gbkey=Gene;gene=pepT;gene_biotype=protein_coding;locus_tag=D5F88_RS09590;old_locus_tag=D5F88_09600 NZ_QYTI01000074.1 Protein Homology CDS 18295 19515 . + 0 ID=cds-WP_000119591.1;Parent=gene-D5F88_RS09590;Dbxref=GenBank:WP_000119591.1;Name=WP_000119591.1;Ontology_term=GO:0006508,GO:0008270,GO:0045148;gbkey=CDS;gene=pepT;go_function=zinc ion binding|0008270||IEA,tripeptide aminopeptidase activity|0045148||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000119594.1;locus_tag=D5F88_RS09590;product=peptidase T;protein_id=WP_000119591.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 19544 20035 . + . ID=gene-D5F88_RS09595;Name=D5F88_RS09595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09595;old_locus_tag=D5F88_09605 NZ_QYTI01000074.1 Protein Homology CDS 19544 20035 . + 0 ID=cds-WP_000593175.1;Parent=gene-D5F88_RS09595;Dbxref=GenBank:WP_000593175.1;Name=WP_000593175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767875.1;locus_tag=D5F88_RS09595;product=EbsA family protein;protein_id=WP_000593175.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 20022 20219 . - . ID=gene-D5F88_RS09600;Name=D5F88_RS09600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09600;old_locus_tag=D5F88_09610 NZ_QYTI01000074.1 Protein Homology CDS 20022 20219 . - 0 ID=cds-WP_016480988.1;Parent=gene-D5F88_RS09600;Dbxref=GenBank:WP_016480988.1;Name=WP_016480988.1;Ontology_term=GO:0005506,GO:0009055,GO:0051536;gbkey=CDS;go_function=iron ion binding|0005506||IEA,electron transfer activity|0009055||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480988.1;locus_tag=D5F88_RS09600;product=ferredoxin;protein_id=WP_016480988.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 20265 20789 . + . ID=gene-D5F88_RS09605;Name=D5F88_RS09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09605;old_locus_tag=D5F88_09615 NZ_QYTI01000074.1 Protein Homology CDS 20265 20789 . + 0 ID=cds-WP_001085534.1;Parent=gene-D5F88_RS09605;Dbxref=GenBank:WP_001085534.1;Name=WP_001085534.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001085531.1;locus_tag=D5F88_RS09605;product=SAG1386/EF1546 family surface-associated protein;protein_id=WP_001085534.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 20800 21483 . + . ID=gene-D5F88_RS09610;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=D5F88_RS09610;old_locus_tag=D5F88_09620 NZ_QYTI01000074.1 Protein Homology CDS 20800 21483 . + 0 ID=cds-WP_001084720.1;Parent=gene-D5F88_RS09610;Dbxref=GenBank:WP_001084720.1;Name=WP_001084720.1;Ontology_term=GO:0015949,GO:0005524,GO:0036431;gbkey=CDS;gene=cmk;go_function=ATP binding|0005524||IEA,dCMP kinase activity|0036431||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771740.1;locus_tag=D5F88_RS09610;product=(d)CMP kinase;protein_id=WP_001084720.1;transl_table=11 NZ_QYTI01000074.1 cmsearch sequence_feature 21504 21629 . + . ID=id-NZ_QYTI01000074.1:21504..21629;Dbxref=RFAM:RF00558;Note=ribosomal protein L20 leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5 NZ_QYTI01000074.1 RefSeq gene 21644 22174 . + . ID=gene-D5F88_RS09615;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=D5F88_RS09615;old_locus_tag=D5F88_09625 NZ_QYTI01000074.1 Protein Homology CDS 21644 22174 . + 0 ID=cds-WP_000691023.1;Parent=gene-D5F88_RS09615;Dbxref=GenBank:WP_000691023.1;Name=WP_000691023.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011226065.1;locus_tag=D5F88_RS09615;product=translation initiation factor IF-3;protein_id=WP_000691023.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 22214 22414 . + . ID=gene-D5F88_RS09620;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=D5F88_RS09620;old_locus_tag=D5F88_09630 NZ_QYTI01000074.1 Protein Homology CDS 22214 22414 . + 0 ID=cds-WP_001125940.1;Parent=gene-D5F88_RS09620;Dbxref=GenBank:WP_001125940.1;Name=WP_001125940.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001125942.1;locus_tag=D5F88_RS09620;product=50S ribosomal protein L35;protein_id=WP_001125940.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 22472 22831 . + . ID=gene-D5F88_RS09625;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=D5F88_RS09625;old_locus_tag=D5F88_09635 NZ_QYTI01000074.1 Protein Homology CDS 22472 22831 . + 0 ID=cds-WP_000124839.1;Parent=gene-D5F88_RS09625;Dbxref=GenBank:WP_000124839.1;Name=WP_000124839.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplT;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019786714.1;locus_tag=D5F88_RS09625;product=50S ribosomal protein L20;protein_id=WP_000124839.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 23073 25217 . - . ID=gene-D5F88_RS09630;Name=D5F88_RS09630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09630;old_locus_tag=D5F88_09640 NZ_QYTI01000074.1 Protein Homology CDS 23073 25217 . - 0 ID=cds-WP_016503017.1;Parent=gene-D5F88_RS09630;Dbxref=GenBank:WP_016503017.1;Name=WP_016503017.1;Ontology_term=GO:0070395;gbkey=CDS;go_process=lipoteichoic acid biosynthetic process|0070395||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768074.1;locus_tag=D5F88_RS09630;product=LTA synthase family protein;protein_id=WP_016503017.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 25352 26509 . + . ID=gene-D5F88_RS09635;Name=D5F88_RS09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09635;old_locus_tag=D5F88_09645 NZ_QYTI01000074.1 Protein Homology CDS 25352 26509 . + 0 ID=cds-WP_016503016.1;Parent=gene-D5F88_RS09635;Dbxref=GenBank:WP_016503016.1;Name=WP_016503016.1;Ontology_term=GO:0006364,GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001037602.1;locus_tag=D5F88_RS09635;product=class I SAM-dependent rRNA methyltransferase;protein_id=WP_016503016.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 26509 27186 . + . ID=gene-D5F88_RS09640;Name=aroD;gbkey=Gene;gene=aroD;gene_biotype=protein_coding;locus_tag=D5F88_RS09640;old_locus_tag=D5F88_09650 NZ_QYTI01000074.1 Protein Homology CDS 26509 27186 . + 0 ID=cds-WP_000707048.1;Parent=gene-D5F88_RS09640;Dbxref=GenBank:WP_000707048.1;Name=WP_000707048.1;Ontology_term=GO:0009423,GO:0003855;gbkey=CDS;gene=aroD;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767486.1;locus_tag=D5F88_RS09640;product=type I 3-dehydroquinate dehydratase;protein_id=WP_000707048.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 27280 28347 . + . ID=gene-D5F88_RS09645;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=D5F88_RS09645;old_locus_tag=D5F88_09655 NZ_QYTI01000074.1 Protein Homology CDS 27280 28347 . + 0 ID=cds-WP_016503015.1;Parent=gene-D5F88_RS09645;Dbxref=GenBank:WP_016503015.1;Name=WP_016503015.1;Ontology_term=GO:0009073,GO:0009423,GO:0003856,GO:0005737;gbkey=CDS;gene=aroB;go_component=cytoplasm|0005737||IEA;go_function=3-dehydroquinate synthase activity|0003856||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA,chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001195728.1;locus_tag=D5F88_RS09645;product=3-dehydroquinate synthase;protein_id=WP_016503015.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 28348 29514 . + . ID=gene-D5F88_RS09650;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=D5F88_RS09650;old_locus_tag=D5F88_09660 NZ_QYTI01000074.1 Protein Homology CDS 28348 29514 . + 0 ID=cds-WP_086163402.1;Parent=gene-D5F88_RS09650;Dbxref=GenBank:WP_086163402.1;Name=WP_086163402.1;Ontology_term=GO:0009073,GO:0004107;gbkey=CDS;gene=aroC;go_function=chorismate synthase activity|0004107||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503014.1;locus_tag=D5F88_RS09650;product=chorismate synthase;protein_id=WP_086163402.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 29598 29933 . + . ID=gene-D5F88_RS09655;Name=D5F88_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09655;old_locus_tag=D5F88_09665 NZ_QYTI01000074.1 Protein Homology CDS 29598 29933 . + 0 ID=cds-WP_000024627.1;Parent=gene-D5F88_RS09655;Dbxref=GenBank:WP_000024627.1;Name=WP_000024627.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000024621.1;locus_tag=D5F88_RS09655;product=YlbF/YmcA family competence regulator;protein_id=WP_000024627.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 30108 31457 . + . ID=gene-D5F88_RS09660;Name=gorA;gbkey=Gene;gene=gorA;gene_biotype=protein_coding;locus_tag=D5F88_RS09660;old_locus_tag=D5F88_09670 NZ_QYTI01000074.1 Protein Homology CDS 30108 31457 . + 0 ID=cds-WP_016503013.1;Parent=gene-D5F88_RS09660;Dbxref=GenBank:WP_016503013.1;Name=WP_016503013.1;Ontology_term=GO:0006749,GO:0045454,GO:0004362,GO:0050660,GO:0050661;gbkey=CDS;gene=gorA;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;go_process=glutathione metabolic process|0006749||IEA,cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632110.1;locus_tag=D5F88_RS09660;product=glutathione-disulfide reductase;protein_id=WP_016503013.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 31500 31952 . - . ID=gene-D5F88_RS09665;Name=D5F88_RS09665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09665;old_locus_tag=D5F88_09675 NZ_QYTI01000074.1 Protein Homology CDS 31500 31952 . - 0 ID=cds-WP_000033716.1;Parent=gene-D5F88_RS09665;Dbxref=GenBank:WP_000033716.1;Name=WP_000033716.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000033712.1;locus_tag=D5F88_RS09665;product=DUF6556 family protein;protein_id=WP_000033716.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 32204 33349 . + . ID=gene-D5F88_RS09670;Name=D5F88_RS09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09670;old_locus_tag=D5F88_09680 NZ_QYTI01000074.1 Protein Homology CDS 32204 33349 . + 0 ID=cds-WP_000638899.1;Parent=gene-D5F88_RS09670;Dbxref=GenBank:WP_000638899.1;Name=WP_000638899.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000638894.1;locus_tag=D5F88_RS09670;product=cysteine desulfurase family protein;protein_id=WP_000638899.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 33351 34565 . + . ID=gene-D5F88_RS09675;Name=thiI;gbkey=Gene;gene=thiI;gene_biotype=protein_coding;locus_tag=D5F88_RS09675;old_locus_tag=D5F88_09685 NZ_QYTI01000074.1 Protein Homology CDS 33351 34565 . + 0 ID=cds-WP_001200110.1;Parent=gene-D5F88_RS09675;Dbxref=GenBank:WP_001200110.1;Name=WP_001200110.1;Ontology_term=GO:0006400,GO:0009228,GO:0140741;gbkey=CDS;gene=thiI;go_function=tRNA-uracil-4 sulfurtransferase activity|0140741||IEA;go_process=tRNA modification|0006400||IEA,thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001200101.1;locus_tag=D5F88_RS09675;product=tRNA uracil 4-sulfurtransferase ThiI;protein_id=WP_001200110.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 34667 35845 . + . ID=gene-D5F88_RS09680;Name=D5F88_RS09680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09680;old_locus_tag=D5F88_09690 NZ_QYTI01000074.1 Protein Homology CDS 34667 35845 . + 0 ID=cds-WP_000101227.1;Parent=gene-D5F88_RS09680;Dbxref=GenBank:WP_000101227.1;Name=WP_000101227.1;Ontology_term=GO:0045227,GO:0042578,GO:0046872;gbkey=CDS;go_function=phosphoric ester hydrolase activity|0042578||IEA,metal ion binding|0046872||IEA;go_process=capsule polysaccharide biosynthetic process|0045227||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000101234.1;locus_tag=D5F88_RS09680;product=CapA family protein;protein_id=WP_000101227.1;transl_table=11 NZ_QYTI01000074.1 cmsearch sequence_feature 35921 36000 . + . ID=id-NZ_QYTI01000074.1:35921..36000;Dbxref=RFAM:RF00559;Note=ribosomal protein L21 leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5 NZ_QYTI01000074.1 RefSeq gene 36035 36349 . + . ID=gene-D5F88_RS09685;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=D5F88_RS09685;old_locus_tag=D5F88_09695 NZ_QYTI01000074.1 Protein Homology CDS 36035 36349 . + 0 ID=cds-WP_000109135.1;Parent=gene-D5F88_RS09685;Dbxref=GenBank:WP_000109135.1;Name=WP_000109135.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rplU;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018374562.1;locus_tag=D5F88_RS09685;product=50S ribosomal protein L21;protein_id=WP_000109135.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 36356 36694 . + . ID=gene-D5F88_RS09690;Name=D5F88_RS09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09690;old_locus_tag=D5F88_09700 NZ_QYTI01000074.1 Protein Homology CDS 36356 36694 . + 0 ID=cds-WP_000588480.1;Parent=gene-D5F88_RS09690;Dbxref=GenBank:WP_000588480.1;Name=WP_000588480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000588481.1;locus_tag=D5F88_RS09690;product=ribosomal-processing cysteine protease Prp;protein_id=WP_000588480.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 36716 37009 . + . ID=gene-D5F88_RS09695;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=D5F88_RS09695;old_locus_tag=D5F88_09705 NZ_QYTI01000074.1 Protein Homology CDS 36716 37009 . + 0 ID=cds-WP_000916503.1;Parent=gene-D5F88_RS09695;Dbxref=GenBank:WP_000916503.1;Name=WP_000916503.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmA;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018376869.1;locus_tag=D5F88_RS09695;product=50S ribosomal protein L27;protein_id=WP_000916503.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 37225 38130 . + . ID=gene-D5F88_RS09700;Name=D5F88_RS09700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09700;old_locus_tag=D5F88_09710 NZ_QYTI01000074.1 Protein Homology CDS 37225 38130 . + 0 ID=cds-WP_001025683.1;Parent=gene-D5F88_RS09700;Dbxref=GenBank:WP_001025683.1;Name=WP_001025683.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646939.1;locus_tag=D5F88_RS09700;product=LysR family transcriptional regulator;protein_id=WP_001025683.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 38139 38603 . + . ID=gene-D5F88_RS09705;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=D5F88_RS09705;old_locus_tag=D5F88_09715 NZ_QYTI01000074.1 Protein Homology CDS 38139 38603 . + 0 ID=cds-WP_001226253.1;Parent=gene-D5F88_RS09705;Dbxref=GenBank:WP_001226253.1;Name=WP_001226253.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005886;gbkey=CDS;gene=lspA;go_component=plasma membrane|0005886||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001226252.1;locus_tag=D5F88_RS09705;product=signal peptidase II;protein_id=WP_001226253.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 38587 39477 . + . ID=gene-D5F88_RS09710;Name=D5F88_RS09710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09710;old_locus_tag=D5F88_09720 NZ_QYTI01000074.1 Protein Homology CDS 38587 39477 . + 0 ID=cds-WP_016503010.1;Parent=gene-D5F88_RS09710;Dbxref=GenBank:WP_016503010.1;Name=WP_016503010.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000406595.1;locus_tag=D5F88_RS09710;product=RluA family pseudouridine synthase;protein_id=WP_016503010.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 39653 40174 . + . ID=gene-D5F88_RS09715;Name=pyrR;gbkey=Gene;gene=pyrR;gene_biotype=protein_coding;locus_tag=D5F88_RS09715;old_locus_tag=D5F88_09725 NZ_QYTI01000074.1 Protein Homology CDS 39653 40174 . + 0 ID=cds-WP_000823056.1;Parent=gene-D5F88_RS09715;Dbxref=GenBank:WP_000823056.1;Name=WP_000823056.1;gbkey=CDS;gene=pyrR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000823056.1;locus_tag=D5F88_RS09715;product=bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR;protein_id=WP_000823056.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 40223 41293 . + . ID=gene-D5F88_RS09720;Name=D5F88_RS09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09720;old_locus_tag=D5F88_09730 NZ_QYTI01000074.1 Protein Homology CDS 40223 41293 . + 0 ID=cds-WP_001085243.1;Parent=gene-D5F88_RS09720;Dbxref=GenBank:WP_001085243.1;Name=WP_001085243.1;Ontology_term=GO:0006541,GO:0004088;gbkey=CDS;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480977.1;locus_tag=D5F88_RS09720;product=carbamoyl phosphate synthase small subunit;protein_id=WP_001085243.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 41349 42947 . + . ID=gene-D5F88_RS09725;Name=D5F88_RS09725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09725;old_locus_tag=D5F88_09735 NZ_QYTI01000074.1 Protein Homology CDS 41349 42947 . + 0 ID=cds-WP_086163401.1;Parent=gene-D5F88_RS09725;Dbxref=GenBank:WP_086163401.1;Name=WP_086163401.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771827.1;locus_tag=D5F88_RS09725;product=ATP-binding protein;protein_id=WP_086163401.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 43156 44400 . + . ID=gene-D5F88_RS09730;Name=D5F88_RS09730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09730;old_locus_tag=D5F88_09740 NZ_QYTI01000074.1 Protein Homology CDS 43156 44400 . + 0 ID=cds-WP_016503007.1;Parent=gene-D5F88_RS09730;Dbxref=GenBank:WP_016503007.1;Name=WP_016503007.1;Ontology_term=GO:0055085,GO:0022857,GO:0042802,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA,identical protein binding|0042802||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058633.1;locus_tag=D5F88_RS09730;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_016503007.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 44403 45113 . + . ID=gene-D5F88_RS09735;Name=D5F88_RS09735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09735;old_locus_tag=D5F88_09745 NZ_QYTI01000074.1 Protein Homology CDS 44403 45113 . + 0 ID=cds-WP_016503006.1;Parent=gene-D5F88_RS09735;Dbxref=GenBank:WP_016503006.1;Name=WP_016503006.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000210672.1;locus_tag=D5F88_RS09735;product=ABC transporter ATP-binding protein;protein_id=WP_016503006.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 45128 46375 . + . ID=gene-D5F88_RS09740;Name=D5F88_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09740;old_locus_tag=D5F88_09750 NZ_QYTI01000074.1 Protein Homology CDS 45128 46375 . + 0 ID=cds-WP_000432854.1;Parent=gene-D5F88_RS09740;Dbxref=GenBank:WP_000432854.1;Name=WP_000432854.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000432854.1;locus_tag=D5F88_RS09740;product=ABC transporter permease;protein_id=WP_000432854.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 46504 46776 . + . ID=gene-D5F88_RS09745;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=D5F88_RS09745;old_locus_tag=D5F88_09755 NZ_QYTI01000074.1 Protein Homology CDS 46504 46776 . + 0 ID=cds-WP_000268757.1-2;Parent=gene-D5F88_RS09745;Dbxref=GenBank:WP_000268757.1;Name=WP_000268757.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002884675.1;locus_tag=D5F88_RS09745;product=30S ribosomal protein S16;protein_id=WP_000268757.1;transl_table=11 NZ_QYTI01000074.1 RefSeq gene 46786 47028 . + . ID=gene-D5F88_RS09750;Name=D5F88_RS09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09750;old_locus_tag=D5F88_09760 NZ_QYTI01000074.1 Protein Homology CDS 46786 47028 . + 0 ID=cds-WP_000379626.1-2;Parent=gene-D5F88_RS09750;Dbxref=GenBank:WP_000379626.1;Name=WP_000379626.1;Ontology_term=GO:0003676;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000379626.1;locus_tag=D5F88_RS09750;product=KH domain-containing protein;protein_id=WP_000379626.1;transl_table=11 ##sequence-region NZ_QYTI01000075.1 1 1532 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000075.1 RefSeq region 1 1532 . + . ID=NZ_QYTI01000075.1:1..1532;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000075.1 RefSeq pseudogene 1 477 . - . ID=gene-D5F88_RS09755;Name=D5F88_RS09755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS09755;old_locus_tag=D5F88_09765;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000075.1 Protein Homology CDS 1 477 . - 0 ID=cds-D5F88_RS09755;Parent=gene-D5F88_RS09755;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011285343.1;locus_tag=D5F88_RS09755;partial=true;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000075.1 RefSeq gene 497 1249 . - . ID=gene-D5F88_RS09760;Name=D5F88_RS09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09760;old_locus_tag=D5F88_09770 NZ_QYTI01000075.1 Protein Homology CDS 497 1249 . - 0 ID=cds-WP_124773356.1;Parent=gene-D5F88_RS09760;Dbxref=GenBank:WP_124773356.1;Name=WP_124773356.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000780023.1;locus_tag=D5F88_RS09760;product=GNAT family N-acetyltransferase;protein_id=WP_124773356.1;transl_table=11 NZ_QYTI01000075.1 RefSeq gene 1272 1532 . - . ID=gene-D5F88_RS09765;Name=D5F88_RS09765;end_range=1532,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09765;old_locus_tag=D5F88_09775;partial=true NZ_QYTI01000075.1 Protein Homology CDS 1272 1532 . - 0 ID=cds-WP_260424980.1;Parent=gene-D5F88_RS09765;Dbxref=GenBank:WP_260424980.1;Name=WP_260424980.1;Ontology_term=GO:0009058,GO:0016742;end_range=1532,.;gbkey=CDS;go_function=hydroxymethyl-%2C formyl- and related transferase activity|0016742||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502375.1;locus_tag=D5F88_RS09765;partial=true;product=formyltransferase family protein;protein_id=WP_260424980.1;transl_table=11 ##sequence-region NZ_QYTI01000076.1 1 6767 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000076.1 RefSeq region 1 6767 . + . ID=NZ_QYTI01000076.1:1..6767;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000076.1 RefSeq pseudogene 1 358 . + . ID=gene-D5F88_RS09770;Name=D5F88_RS09770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS09770;old_locus_tag=D5F88_09780;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000076.1 Protein Homology CDS 1 358 . + 1 ID=cds-D5F88_RS09770;Parent=gene-D5F88_RS09770;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018374982.1;locus_tag=D5F88_RS09770;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000076.1 RefSeq gene 506 1390 . + . ID=gene-D5F88_RS09775;Name=D5F88_RS09775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09775;old_locus_tag=D5F88_09785 NZ_QYTI01000076.1 Protein Homology CDS 506 1390 . + 0 ID=cds-WP_000052520.1;Parent=gene-D5F88_RS09775;Dbxref=GenBank:WP_000052520.1;Name=WP_000052520.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000052515.1;locus_tag=D5F88_RS09775;product=SPFH domain-containing protein;protein_id=WP_000052520.1;transl_table=11 NZ_QYTI01000076.1 RefSeq gene 1482 1598 . - . ID=gene-D5F88_RS09780;Name=D5F88_RS09780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09780;old_locus_tag=D5F88_09790 NZ_QYTI01000076.1 Protein Homology CDS 1482 1598 . - 0 ID=cds-WP_000818733.1;Parent=gene-D5F88_RS09780;Dbxref=GenBank:WP_000818733.1;Name=WP_000818733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000818732.1;locus_tag=D5F88_RS09780;product=putative metal homeostasis protein;protein_id=WP_000818733.1;transl_table=11 NZ_QYTI01000076.1 RefSeq gene 1965 2255 . - . ID=gene-D5F88_RS09785;Name=D5F88_RS09785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09785;old_locus_tag=D5F88_09795 NZ_QYTI01000076.1 Protein Homology CDS 1965 2255 . - 0 ID=cds-WP_000768370.1;Parent=gene-D5F88_RS09785;Dbxref=GenBank:WP_000768370.1;Name=WP_000768370.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000768368.1;locus_tag=D5F88_RS09785;product=hypothetical protein;protein_id=WP_000768370.1;transl_table=11 NZ_QYTI01000076.1 RefSeq gene 2597 3337 . - . ID=gene-D5F88_RS09790;Name=D5F88_RS09790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09790;old_locus_tag=D5F88_09800 NZ_QYTI01000076.1 Protein Homology CDS 2597 3337 . - 0 ID=cds-WP_000189495.1;Parent=gene-D5F88_RS09790;Dbxref=GenBank:WP_000189495.1;Name=WP_000189495.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003063284.1;locus_tag=D5F88_RS09790;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_000189495.1;transl_table=11 NZ_QYTI01000076.1 RefSeq gene 3347 4897 . - . ID=gene-D5F88_RS09795;Name=D5F88_RS09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09795;old_locus_tag=D5F88_09805 NZ_QYTI01000076.1 Protein Homology CDS 3347 4897 . - 0 ID=cds-WP_000722381.1;Parent=gene-D5F88_RS09795;Dbxref=GenBank:WP_000722381.1;Name=WP_000722381.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020,GO:0043190,GO:0055052;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000722382.1;locus_tag=D5F88_RS09795;product=ABC transporter substrate-binding protein/permease;protein_id=WP_000722381.1;transl_table=11 NZ_QYTI01000076.1 RefSeq gene 5033 6767 . + . ID=gene-D5F88_RS09800;Name=D5F88_RS09800;end_range=6767,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09800;old_locus_tag=D5F88_09810;partial=true NZ_QYTI01000076.1 Protein Homology CDS 5033 6767 . + 0 ID=cds-WP_142997446.1;Parent=gene-D5F88_RS09800;Dbxref=GenBank:WP_142997446.1;Name=WP_142997446.1;end_range=6767,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000710501.1;locus_tag=D5F88_RS09800;partial=true;product=DUF2207 domain-containing protein;protein_id=WP_142997446.1;transl_table=11 ##sequence-region NZ_QYTI01000077.1 1 1042 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000077.1 RefSeq region 1 1042 . + . ID=NZ_QYTI01000077.1:1..1042;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000077.1 RefSeq gene 1 870 . + . ID=gene-D5F88_RS09805;Name=D5F88_RS09805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09805;old_locus_tag=D5F88_09815;partial=true;start_range=.,1 NZ_QYTI01000077.1 Protein Homology CDS 1 870 . + 0 ID=cds-WP_124773358.1;Parent=gene-D5F88_RS09805;Dbxref=GenBank:WP_124773358.1;Name=WP_124773358.1;Ontology_term=GO:0006164,GO:0009113,GO:0004044,GO:0046872,GO:0051539;gbkey=CDS;go_function=amidophosphoribosyltransferase activity|0004044||IEA,metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA,purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480155.1;locus_tag=D5F88_RS09805;partial=true;product=amidophosphoribosyltransferase;protein_id=WP_124773358.1;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000078.1 1 2981 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000078.1 RefSeq region 1 2981 . + . ID=NZ_QYTI01000078.1:1..2981;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000078.1 RefSeq gene 1 1979 . + . ID=gene-D5F88_RS09810;Name=D5F88_RS09810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09810;old_locus_tag=D5F88_09820;partial=true;start_range=.,1 NZ_QYTI01000078.1 Protein Homology CDS 1 1979 . + 2 ID=cds-WP_124773360.1;Parent=gene-D5F88_RS09810;Dbxref=GenBank:WP_124773360.1;Name=WP_124773360.1;Ontology_term=GO:0005524,GO:0016787;gbkey=CDS;go_function=ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001068642.1;locus_tag=D5F88_RS09810;partial=true;product=3'-5' exonuclease;protein_id=WP_124773360.1;start_range=.,1;transl_table=11 NZ_QYTI01000078.1 RefSeq gene 2391 2636 . + . ID=gene-D5F88_RS09815;Name=D5F88_RS09815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09815;old_locus_tag=D5F88_09825 NZ_QYTI01000078.1 Protein Homology CDS 2391 2636 . + 0 ID=cds-WP_086163366.1;Parent=gene-D5F88_RS09815;Dbxref=GenBank:WP_086163366.1;Name=WP_086163366.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000523009.1;locus_tag=D5F88_RS09815;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_086163366.1;transl_table=11 NZ_QYTI01000078.1 RefSeq gene 2684 2932 . + . ID=gene-D5F88_RS09820;Name=D5F88_RS09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09820;old_locus_tag=D5F88_09830 NZ_QYTI01000078.1 Protein Homology CDS 2684 2932 . + 0 ID=cds-WP_000053321.1;Parent=gene-D5F88_RS09820;Dbxref=GenBank:WP_000053321.1;Name=WP_000053321.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000523011.1;locus_tag=D5F88_RS09820;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000053321.1;transl_table=11 ##sequence-region NZ_QYTI01000079.1 1 35126 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000079.1 RefSeq region 1 35126 . + . ID=NZ_QYTI01000079.1:1..35126;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000079.1 RefSeq gene 1 3087 . + . ID=gene-D5F88_RS09825;Name=D5F88_RS09825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09825;old_locus_tag=D5F88_09835;partial=true;start_range=.,1 NZ_QYTI01000079.1 Protein Homology CDS 1 3087 . + 0 ID=cds-WP_124773362.1;Parent=gene-D5F88_RS09825;Dbxref=GenBank:WP_124773362.1;Name=WP_124773362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647570.1;locus_tag=D5F88_RS09825;partial=true;product=CHAP domain-containing protein;protein_id=WP_124773362.1;start_range=.,1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 3100 5091 . + . ID=gene-D5F88_RS09830;Name=D5F88_RS09830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09830;old_locus_tag=D5F88_09840 NZ_QYTI01000079.1 Protein Homology CDS 3100 5091 . + 0 ID=cds-WP_124773364.1;Parent=gene-D5F88_RS09830;Dbxref=GenBank:WP_124773364.1;Name=WP_124773364.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000214870.1;locus_tag=D5F88_RS09830;product=DUF859 family phage minor structural protein;protein_id=WP_124773364.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 5103 5495 . + . ID=gene-D5F88_RS09835;Name=D5F88_RS09835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09835;old_locus_tag=D5F88_09845 NZ_QYTI01000079.1 Protein Homology CDS 5103 5495 . + 0 ID=cds-WP_000889197.1;Parent=gene-D5F88_RS09835;Dbxref=GenBank:WP_000889197.1;Name=WP_000889197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000889195.1;locus_tag=D5F88_RS09835;product=DUF1366 domain-containing protein;protein_id=WP_000889197.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 5518 5646 . + . ID=gene-D5F88_RS11855;Name=D5F88_RS11855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11855 NZ_QYTI01000079.1 Protein Homology CDS 5518 5646 . + 0 ID=cds-WP_000973384.1;Parent=gene-D5F88_RS11855;Dbxref=GenBank:WP_000973384.1;Name=WP_000973384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000973385.1;locus_tag=D5F88_RS11855;product=hypothetical protein;protein_id=WP_000973384.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 5655 5957 . + . ID=gene-D5F88_RS09840;Name=D5F88_RS09840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09840;old_locus_tag=D5F88_09850 NZ_QYTI01000079.1 Protein Homology CDS 5655 5957 . + 0 ID=cds-WP_047207211.1;Parent=gene-D5F88_RS09840;Dbxref=GenBank:WP_047207211.1;Name=WP_047207211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001017823.1;locus_tag=D5F88_RS09840;product=hypothetical protein;protein_id=WP_047207211.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 5950 6177 . + . ID=gene-D5F88_RS09845;Name=D5F88_RS09845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09845;old_locus_tag=D5F88_09855 NZ_QYTI01000079.1 Protein Homology CDS 5950 6177 . + 0 ID=cds-WP_000609112.1;Parent=gene-D5F88_RS09845;Dbxref=GenBank:WP_000609112.1;Name=WP_000609112.1;Ontology_term=GO:0140911;gbkey=CDS;go_function=pore-forming activity|0140911||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480475.1;locus_tag=D5F88_RS09845;product=phage holin;protein_id=WP_000609112.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 6303 7646 . + . ID=gene-D5F88_RS09850;Name=D5F88_RS09850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09850;old_locus_tag=D5F88_09860 NZ_QYTI01000079.1 Protein Homology CDS 6303 7646 . + 0 ID=cds-WP_124773366.1;Parent=gene-D5F88_RS09850;Dbxref=GenBank:WP_124773366.1;Name=WP_124773366.1;Ontology_term=GO:0009253,GO:0016998,GO:0003796;gbkey=CDS;go_function=lysozyme activity|0003796||IEA;go_process=peptidoglycan catabolic process|0009253||IEA,cell wall macromolecule catabolic process|0016998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768203.1;locus_tag=D5F88_RS09850;product=GH25 family lysozyme;protein_id=WP_124773366.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 7840 8070 . + . ID=gene-D5F88_RS09855;Name=D5F88_RS09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09855;old_locus_tag=D5F88_09865 NZ_QYTI01000079.1 GeneMarkS-2+ CDS 7840 8070 . + 0 ID=cds-WP_124759268.1;Parent=gene-D5F88_RS09855;Dbxref=GenBank:WP_124759268.1;Name=WP_124759268.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS09855;product=hypothetical protein;protein_id=WP_124759268.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 8096 8521 . + . ID=gene-D5F88_RS09860;Name=D5F88_RS09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09860;old_locus_tag=D5F88_09870 NZ_QYTI01000079.1 Protein Homology CDS 8096 8521 . + 0 ID=cds-WP_016480480.1;Parent=gene-D5F88_RS09860;Dbxref=GenBank:WP_016480480.1;Name=WP_016480480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480480.1;locus_tag=D5F88_RS09860;product=hypothetical protein;protein_id=WP_016480480.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 8580 8936 . - . ID=gene-D5F88_RS09865;Name=D5F88_RS09865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09865;old_locus_tag=D5F88_09875 NZ_QYTI01000079.1 Protein Homology CDS 8580 8936 . - 0 ID=cds-WP_124759275.1;Parent=gene-D5F88_RS09865;Dbxref=GenBank:WP_124759275.1;Name=WP_124759275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003055891.1;locus_tag=D5F88_RS09865;product=hypothetical protein;protein_id=WP_124759275.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 8869 9411 . - . ID=gene-D5F88_RS09870;Name=D5F88_RS09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09870;old_locus_tag=D5F88_09880 NZ_QYTI01000079.1 Protein Homology CDS 8869 9411 . - 0 ID=cds-WP_124759457.1;Parent=gene-D5F88_RS09870;Dbxref=GenBank:WP_124759457.1;Name=WP_124759457.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480482.1;locus_tag=D5F88_RS09870;product=hypothetical protein;protein_id=WP_124759457.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 9450 9689 . - . ID=gene-D5F88_RS09875;Name=D5F88_RS09875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09875;old_locus_tag=D5F88_09885 NZ_QYTI01000079.1 Protein Homology CDS 9450 9689 . - 0 ID=cds-WP_016480483.1;Parent=gene-D5F88_RS09875;Dbxref=GenBank:WP_016480483.1;Name=WP_016480483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003055856.1;locus_tag=D5F88_RS09875;product=hypothetical protein;protein_id=WP_016480483.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 9906 10112 . + . ID=gene-D5F88_RS09880;Name=D5F88_RS09880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09880;old_locus_tag=D5F88_09890 NZ_QYTI01000079.1 Protein Homology CDS 9906 10112 . + 0 ID=cds-WP_016480484.1;Parent=gene-D5F88_RS09880;Dbxref=GenBank:WP_016480484.1;Name=WP_016480484.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480484.1;locus_tag=D5F88_RS09880;product=competence regulator inhibitor paratox;protein_id=WP_016480484.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 10155 11573 . + . ID=gene-D5F88_RS09885;Name=D5F88_RS09885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09885;old_locus_tag=D5F88_09895 NZ_QYTI01000079.1 Protein Homology CDS 10155 11573 . + 0 ID=cds-WP_124749158.1;Parent=gene-D5F88_RS09885;Dbxref=GenBank:WP_124749158.1;Name=WP_124749158.1;Ontology_term=GO:0006508,GO:0016805;gbkey=CDS;go_function=dipeptidase activity|0016805||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011017593.1;locus_tag=D5F88_RS09885;product=C69 family dipeptidase;protein_id=WP_124749158.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 11715 13241 . + . ID=gene-D5F88_RS09890;Name=D5F88_RS09890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09890;old_locus_tag=D5F88_09900 NZ_QYTI01000079.1 Protein Homology CDS 11715 13241 . + 0 ID=cds-WP_001227401.1;Parent=gene-D5F88_RS09890;Dbxref=GenBank:WP_001227401.1;Name=WP_001227401.1;Ontology_term=GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285234.1;locus_tag=D5F88_RS09890;product=zinc ABC transporter substrate-binding protein AdcA;protein_id=WP_001227401.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 13354 13614 . - . ID=gene-D5F88_RS09895;Name=D5F88_RS09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09895;old_locus_tag=D5F88_09905 NZ_QYTI01000079.1 Protein Homology CDS 13354 13614 . - 0 ID=cds-WP_000710757.1;Parent=gene-D5F88_RS09895;Dbxref=GenBank:WP_000710757.1;Name=WP_000710757.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018370011.1;locus_tag=D5F88_RS09895;product=type B 50S ribosomal protein L31;protein_id=WP_000710757.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 13723 14658 . - . ID=gene-D5F88_RS09900;Name=D5F88_RS09900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09900;old_locus_tag=D5F88_09910 NZ_QYTI01000079.1 Protein Homology CDS 13723 14658 . - 0 ID=cds-WP_016502636.1;Parent=gene-D5F88_RS09900;Dbxref=GenBank:WP_016502636.1;Name=WP_016502636.1;Ontology_term=GO:0003676,GO:0042578;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,phosphoric ester hydrolase activity|0042578||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000583237.1;locus_tag=D5F88_RS09900;product=DHH family phosphoesterase;protein_id=WP_016502636.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 14924 15946 . + . ID=gene-D5F88_RS09905;Name=add;gbkey=Gene;gene=add;gene_biotype=protein_coding;locus_tag=D5F88_RS09905;old_locus_tag=D5F88_09915 NZ_QYTI01000079.1 Protein Homology CDS 14924 15946 . + 0 ID=cds-WP_016502637.1;Parent=gene-D5F88_RS09905;Dbxref=GenBank:WP_016502637.1;Name=WP_016502637.1;Ontology_term=GO:0043101,GO:0004000,GO:0019239;gbkey=CDS;gene=add;go_function=adenosine deaminase activity|0004000||IEA,deaminase activity|0019239||IEA;go_process=purine-containing compound salvage|0043101||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502637.1;locus_tag=D5F88_RS09905;product=adenosine deaminase;protein_id=WP_016502637.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 16005 16448 . + . ID=gene-D5F88_RS09910;Name=D5F88_RS09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09910;old_locus_tag=D5F88_09920 NZ_QYTI01000079.1 Protein Homology CDS 16005 16448 . + 0 ID=cds-WP_001162138.1;Parent=gene-D5F88_RS09910;Dbxref=GenBank:WP_001162138.1;Name=WP_001162138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480489.1;locus_tag=D5F88_RS09910;product=flavodoxin;protein_id=WP_001162138.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 16525 16800 . + . ID=gene-D5F88_RS09915;Name=D5F88_RS09915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09915;old_locus_tag=D5F88_09925 NZ_QYTI01000079.1 Protein Homology CDS 16525 16800 . + 0 ID=cds-WP_000418127.1;Parent=gene-D5F88_RS09915;Dbxref=GenBank:WP_000418127.1;Name=WP_000418127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000418127.1;locus_tag=D5F88_RS09915;product=chorismate mutase;protein_id=WP_000418127.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 16793 17989 . + . ID=gene-D5F88_RS09920;Name=D5F88_RS09920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09920;old_locus_tag=D5F88_09930 NZ_QYTI01000079.1 Protein Homology CDS 16793 17989 . + 0 ID=cds-WP_016502638.1;Parent=gene-D5F88_RS09920;Dbxref=GenBank:WP_016502638.1;Name=WP_016502638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000595711.1;locus_tag=D5F88_RS09920;product=voltage-gated chloride channel family protein;protein_id=WP_016502638.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 18574 18921 . + . ID=gene-D5F88_RS09925;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=D5F88_RS09925;old_locus_tag=D5F88_09935 NZ_QYTI01000079.1 Protein Homology CDS 18574 18921 . + 0 ID=cds-WP_001068667.1;Parent=gene-D5F88_RS09925;Dbxref=GenBank:WP_001068667.1;Name=WP_001068667.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005590628.1;locus_tag=D5F88_RS09925;product=50S ribosomal protein L19;protein_id=WP_001068667.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 19032 19103 . + . ID=gene-D5F88_RS09930;Name=D5F88_RS09930;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS09930;old_locus_tag=D5F88_09940 NZ_QYTI01000079.1 tRNAscan-SE tRNA 19032 19103 . + . ID=rna-D5F88_RS09930;Parent=gene-D5F88_RS09930;anticodon=(pos:19065..19067);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS09930;product=tRNA-Arg NZ_QYTI01000079.1 tRNAscan-SE exon 19032 19103 . + . ID=exon-D5F88_RS09930-1;Parent=rna-D5F88_RS09930;anticodon=(pos:19065..19067);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS09930;product=tRNA-Arg NZ_QYTI01000079.1 RefSeq gene 19393 20598 . + . ID=gene-D5F88_RS09935;Name=D5F88_RS09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09935;old_locus_tag=D5F88_09945 NZ_QYTI01000079.1 Protein Homology CDS 19393 20598 . + 0 ID=cds-WP_000078933.1;Parent=gene-D5F88_RS09935;Dbxref=GenBank:WP_000078933.1;Name=WP_000078933.1;Ontology_term=GO:0008360,GO:0009252,GO:0051301,GO:0071555,GO:0008955,GO:0015648;gbkey=CDS;go_function=peptidoglycan glycosyltransferase activity|0008955||IEA,lipid-linked peptidoglycan transporter activity|0015648||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000078928.1;locus_tag=D5F88_RS09935;product=FtsW/RodA/SpoVE family cell cycle protein;protein_id=WP_000078933.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 20716 21276 . + . ID=gene-D5F88_RS09940;Name=D5F88_RS09940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09940;old_locus_tag=D5F88_09950 NZ_QYTI01000079.1 Protein Homology CDS 20716 21276 . + 0 ID=cds-WP_001106189.1;Parent=gene-D5F88_RS09940;Dbxref=GenBank:WP_001106189.1;Name=WP_001106189.1;Ontology_term=GO:0008152,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001106189.1;locus_tag=D5F88_RS09940;product=HAD-IA family hydrolase;protein_id=WP_001106189.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 21277 23229 . + . ID=gene-D5F88_RS09945;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=D5F88_RS09945;old_locus_tag=D5F88_09955 NZ_QYTI01000079.1 Protein Homology CDS 21277 23229 . + 0 ID=cds-WP_000134062.1;Parent=gene-D5F88_RS09945;Dbxref=GenBank:WP_000134062.1;Name=WP_000134062.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=gyrB;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002283665.1;locus_tag=D5F88_RS09945;product=DNA topoisomerase (ATP-hydrolyzing) subunit B;protein_id=WP_000134062.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 23323 25047 . + . ID=gene-D5F88_RS09950;Name=ezrA;gbkey=Gene;gene=ezrA;gene_biotype=protein_coding;locus_tag=D5F88_RS09950;old_locus_tag=D5F88_09960 NZ_QYTI01000079.1 Protein Homology CDS 23323 25047 . + 0 ID=cds-WP_000094337.1;Parent=gene-D5F88_RS09950;Dbxref=GenBank:WP_000094337.1;Name=WP_000094337.1;gbkey=CDS;gene=ezrA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648073.1;locus_tag=D5F88_RS09950;product=septation ring formation regulator EzrA;protein_id=WP_000094337.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 25141 25782 . + . ID=gene-D5F88_RS09955;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=D5F88_RS09955;old_locus_tag=D5F88_09965 NZ_QYTI01000079.1 Protein Homology CDS 25141 25782 . + 0 ID=cds-WP_016502641.1;Parent=gene-D5F88_RS09955;Dbxref=GenBank:WP_016502641.1;Name=WP_016502641.1;Ontology_term=GO:0006564,GO:0036424;gbkey=CDS;gene=serB;go_function=L-phosphoserine phosphatase activity|0036424||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000589687.1;locus_tag=D5F88_RS09955;product=phosphoserine phosphatase SerB;protein_id=WP_016502641.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 25803 26288 . - . ID=gene-D5F88_RS09960;Name=D5F88_RS09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09960;old_locus_tag=D5F88_09970 NZ_QYTI01000079.1 Protein Homology CDS 25803 26288 . - 0 ID=cds-WP_000409124.1;Parent=gene-D5F88_RS09960;Dbxref=GenBank:WP_000409124.1;Name=WP_000409124.1;Ontology_term=GO:0009132,GO:0016817,GO:0046872;gbkey=CDS;go_function=hydrolase activity%2C acting on acid anhydrides|0016817||IEA,metal ion binding|0046872||IEA;go_process=nucleoside diphosphate metabolic process|0009132||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000409123.1;locus_tag=D5F88_RS09960;product=NUDIX hydrolase;protein_id=WP_000409124.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 26301 26756 . - . ID=gene-D5F88_RS09965;Name=D5F88_RS09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09965;old_locus_tag=D5F88_09975 NZ_QYTI01000079.1 Protein Homology CDS 26301 26756 . - 0 ID=cds-WP_016502642.1;Parent=gene-D5F88_RS09965;Dbxref=GenBank:WP_016502642.1;Name=WP_016502642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000137375.1;locus_tag=D5F88_RS09965;product=YueI family protein;protein_id=WP_016502642.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 26954 28261 . + . ID=gene-D5F88_RS09970;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=D5F88_RS09970;old_locus_tag=D5F88_09980 NZ_QYTI01000079.1 Protein Homology CDS 26954 28261 . + 0 ID=cds-WP_000022832.1;Parent=gene-D5F88_RS09970;Dbxref=GenBank:WP_000022832.1;Name=WP_000022832.1;gbkey=CDS;gene=eno;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002985288.1;locus_tag=D5F88_RS09970;product=surface-displayed alpha-enolase;protein_id=WP_000022832.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 28369 29358 . - . ID=gene-D5F88_RS09975;Name=D5F88_RS09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09975;old_locus_tag=D5F88_09985 NZ_QYTI01000079.1 Protein Homology CDS 28369 29358 . - 0 ID=cds-WP_086163263.1;Parent=gene-D5F88_RS09975;Dbxref=GenBank:WP_086163263.1;Name=WP_086163263.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648393.1;locus_tag=D5F88_RS09975;product=DNA/RNA non-specific endonuclease;protein_id=WP_086163263.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 29587 30870 . + . ID=gene-D5F88_RS09980;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=D5F88_RS09980;old_locus_tag=D5F88_09990 NZ_QYTI01000079.1 Protein Homology CDS 29587 30870 . + 0 ID=cds-WP_086163264.1;Parent=gene-D5F88_RS09980;Dbxref=GenBank:WP_086163264.1;Name=WP_086163264.1;Ontology_term=GO:0009073,GO:0003866;gbkey=CDS;gene=aroA;go_function=3-phosphoshikimate 1-carboxyvinyltransferase activity|0003866||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000772014.1;locus_tag=D5F88_RS09980;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_086163264.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 30863 31375 . + . ID=gene-D5F88_RS09985;Name=D5F88_RS09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09985;old_locus_tag=D5F88_09995 NZ_QYTI01000079.1 Protein Homology CDS 30863 31375 . + 0 ID=cds-WP_001127189.1;Parent=gene-D5F88_RS09985;Dbxref=GenBank:WP_001127189.1;Name=WP_001127189.1;Ontology_term=GO:0008652,GO:0009073,GO:0000287,GO:0004765,GO:0005524;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,shikimate kinase activity|0004765||IEA,ATP binding|0005524||IEA;go_process=amino acid biosynthetic process|0008652||IEA,aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001127191.1;locus_tag=D5F88_RS09985;product=shikimate kinase;protein_id=WP_001127189.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 31432 32805 . + . ID=gene-D5F88_RS09990;Name=D5F88_RS09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS09990;old_locus_tag=D5F88_10000 NZ_QYTI01000079.1 Protein Homology CDS 31432 32805 . + 0 ID=cds-WP_016502647.1;Parent=gene-D5F88_RS09990;Dbxref=GenBank:WP_016502647.1;Name=WP_016502647.1;Ontology_term=GO:0070726;gbkey=CDS;go_process=cell wall assembly|0070726||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000089330.1;locus_tag=D5F88_RS09990;product=LCP family protein;protein_id=WP_016502647.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 32906 34537 . + . ID=gene-D5F88_RS09995;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=protein_coding;locus_tag=D5F88_RS09995;old_locus_tag=D5F88_10005 NZ_QYTI01000079.1 Protein Homology CDS 32906 34537 . + 0 ID=cds-WP_086163265.1;Parent=gene-D5F88_RS09995;Dbxref=GenBank:WP_086163265.1;Name=WP_086163265.1;Ontology_term=GO:0000154,GO:0008649;gbkey=CDS;gene=rlmD;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=rRNA modification|0000154||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000914584.1;locus_tag=D5F88_RS09995;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_086163265.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 34556 34837 . + . ID=gene-D5F88_RS10000;Name=D5F88_RS10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10000;old_locus_tag=D5F88_10010 NZ_QYTI01000079.1 Protein Homology CDS 34556 34837 . + 0 ID=cds-WP_086163266.1;Parent=gene-D5F88_RS10000;Dbxref=GenBank:WP_086163266.1;Name=WP_086163266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001267199.1;locus_tag=D5F88_RS10000;product=CD1845 family protein;protein_id=WP_086163266.1;transl_table=11 NZ_QYTI01000079.1 RefSeq gene 34874 35126 . + . ID=gene-D5F88_RS10005;Name=D5F88_RS10005;end_range=35126,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10005;old_locus_tag=D5F88_10015;partial=true NZ_QYTI01000079.1 Protein Homology CDS 34874 35126 . + 0 ID=cds-WP_124773368.1;Parent=gene-D5F88_RS10005;Dbxref=GenBank:WP_124773368.1;Name=WP_124773368.1;end_range=35126,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013852041.1;locus_tag=D5F88_RS10005;partial=true;product=ClbS/DfsB family four-helix bundle protein;protein_id=WP_124773368.1;transl_table=11 ##sequence-region NZ_QYTI01000008.1 1 22076 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000008.1 RefSeq region 1 22076 . + . ID=NZ_QYTI01000008.1:1..22076;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000008.1 RefSeq gene 1 399 . + . ID=gene-D5F88_RS01735;Name=D5F88_RS01735;gbkey=Gene;gene_biotype=rRNA;locus_tag=D5F88_RS01735;old_locus_tag=D5F88_01740;partial=true;start_range=.,1 NZ_QYTI01000008.1 cmsearch rRNA 1 399 . + . ID=rna-D5F88_RS01735;Parent=gene-D5F88_RS01735;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01735;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_QYTI01000008.1 cmsearch exon 1 399 . + . ID=exon-D5F88_RS01735-1;Parent=rna-D5F88_RS01735;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01735;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_QYTI01000008.1 RefSeq gene 474 589 . + . ID=gene-D5F88_RS01740;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=D5F88_RS01740;old_locus_tag=D5F88_01745 NZ_QYTI01000008.1 cmsearch rRNA 474 589 . + . ID=rna-D5F88_RS01740;Parent=gene-D5F88_RS01740;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01740;product=5S ribosomal RNA NZ_QYTI01000008.1 cmsearch exon 474 589 . + . ID=exon-D5F88_RS01740-1;Parent=rna-D5F88_RS01740;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS01740;product=5S ribosomal RNA NZ_QYTI01000008.1 RefSeq gene 595 668 . + . ID=gene-D5F88_RS01745;Name=D5F88_RS01745;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS01745;old_locus_tag=D5F88_01750 NZ_QYTI01000008.1 tRNAscan-SE tRNA 595 668 . + . ID=rna-D5F88_RS01745;Parent=gene-D5F88_RS01745;anticodon=(pos:629..631);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01745;product=tRNA-Asn NZ_QYTI01000008.1 tRNAscan-SE exon 595 668 . + . ID=exon-D5F88_RS01745-1;Parent=rna-D5F88_RS01745;anticodon=(pos:629..631);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS01745;product=tRNA-Asn NZ_QYTI01000008.1 RefSeq gene 809 1660 . + . ID=gene-D5F88_RS01750;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=D5F88_RS01750;old_locus_tag=D5F88_01755 NZ_QYTI01000008.1 Protein Homology CDS 809 1660 . + 0 ID=cds-WP_000688172.1;Parent=gene-D5F88_RS01750;Dbxref=GenBank:WP_000688172.1;Name=WP_000688172.1;Ontology_term=GO:0016114,GO:0050515;gbkey=CDS;gene=ispE;go_function=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity|0050515||IEA;go_process=terpenoid biosynthetic process|0016114||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000688173.1;locus_tag=D5F88_RS01750;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=WP_000688172.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 1746 2189 . + . ID=gene-D5F88_RS01755;Name=D5F88_RS01755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01755;old_locus_tag=D5F88_01760 NZ_QYTI01000008.1 Protein Homology CDS 1746 2189 . + 0 ID=cds-WP_000217076.1;Parent=gene-D5F88_RS01755;Dbxref=GenBank:WP_000217076.1;Name=WP_000217076.1;Ontology_term=GO:0006355,GO:0003700,GO:0008270;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002986587.1;locus_tag=D5F88_RS01755;product=zinc-dependent MarR family transcriptional regulator;protein_id=WP_000217076.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 2192 2902 . + . ID=gene-D5F88_RS01760;Name=D5F88_RS01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01760;old_locus_tag=D5F88_01765 NZ_QYTI01000008.1 Protein Homology CDS 2192 2902 . + 0 ID=cds-WP_001269501.1;Parent=gene-D5F88_RS01760;Dbxref=GenBank:WP_001269501.1;Name=WP_001269501.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001269500.1;locus_tag=D5F88_RS01760;product=metal ABC transporter ATP-binding protein;protein_id=WP_001269501.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 2892 3704 . + . ID=gene-D5F88_RS01765;Name=D5F88_RS01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01765;old_locus_tag=D5F88_01770 NZ_QYTI01000008.1 Protein Homology CDS 2892 3704 . + 0 ID=cds-WP_000923269.1;Parent=gene-D5F88_RS01765;Dbxref=GenBank:WP_000923269.1;Name=WP_000923269.1;Ontology_term=GO:0030001,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=metal ion transport|0030001||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000923271.1;locus_tag=D5F88_RS01765;product=metal ABC transporter permease;protein_id=WP_000923269.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 3915 4946 . - . ID=gene-D5F88_RS01770;Name=D5F88_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01770;old_locus_tag=D5F88_01775 NZ_QYTI01000008.1 Protein Homology CDS 3915 4946 . - 0 ID=cds-WP_000777422.1;Parent=gene-D5F88_RS01770;Dbxref=GenBank:WP_000777422.1;Name=WP_000777422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767962.1;locus_tag=D5F88_RS01770;product=DNA/RNA non-specific endonuclease;protein_id=WP_000777422.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 5526 6785 . - . ID=gene-D5F88_RS01775;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=D5F88_RS01775;old_locus_tag=D5F88_01780 NZ_QYTI01000008.1 Protein Homology CDS 5526 6785 . - 0 ID=cds-WP_001019849.1;Parent=gene-D5F88_RS01775;Dbxref=GenBank:WP_001019849.1;Name=WP_001019849.1;Ontology_term=GO:0006437,GO:0000166,GO:0004831,GO:0005524;gbkey=CDS;gene=tyrS;go_function=nucleotide binding|0000166||IEA,tyrosine-tRNA ligase activity|0004831||IEA,ATP binding|0005524||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058310.1;locus_tag=D5F88_RS01775;product=tyrosine--tRNA ligase;protein_id=WP_001019849.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 6896 9193 . + . ID=gene-D5F88_RS01780;Name=pbp1b;gbkey=Gene;gene=pbp1b;gene_biotype=protein_coding;locus_tag=D5F88_RS01780;old_locus_tag=D5F88_01785 NZ_QYTI01000008.1 Protein Homology CDS 6896 9193 . + 0 ID=cds-WP_000472390.1;Parent=gene-D5F88_RS01780;Dbxref=GenBank:WP_000472390.1;Name=WP_000472390.1;gbkey=CDS;gene=pbp1b;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646300.1;locus_tag=D5F88_RS01780;product=penicillin-binding protein PBP1B;protein_id=WP_000472390.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 9717 13292 . + . ID=gene-D5F88_RS01785;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=D5F88_RS01785;old_locus_tag=D5F88_01790 NZ_QYTI01000008.1 Protein Homology CDS 9717 13292 . + 0 ID=cds-WP_086163192.1;Parent=gene-D5F88_RS01785;Dbxref=GenBank:WP_086163192.1;Name=WP_086163192.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoB;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000907193.1;locus_tag=D5F88_RS01785;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_086163192.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 13409 17059 . + . ID=gene-D5F88_RS01790;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=D5F88_RS01790;old_locus_tag=D5F88_01795 NZ_QYTI01000008.1 Protein Homology CDS 13409 17059 . + 0 ID=cds-WP_000228729.1;Parent=gene-D5F88_RS01790;Dbxref=GenBank:WP_000228729.1;Name=WP_000228729.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoC;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631755.1;locus_tag=D5F88_RS01790;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_000228729.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 17173 17538 . + . ID=gene-D5F88_RS01795;Name=D5F88_RS01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01795;old_locus_tag=D5F88_01800 NZ_QYTI01000008.1 Protein Homology CDS 17173 17538 . + 0 ID=cds-WP_000285373.1;Parent=gene-D5F88_RS01795;Dbxref=GenBank:WP_000285373.1;Name=WP_000285373.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000285371.1;locus_tag=D5F88_RS01795;product=DUF1033 family protein;protein_id=WP_000285373.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 17710 18681 . + . ID=gene-D5F88_RS01805;Name=comGA;gbkey=Gene;gene=comGA;gene_biotype=protein_coding;locus_tag=D5F88_RS01805;old_locus_tag=D5F88_01810 NZ_QYTI01000008.1 Protein Homology CDS 17710 18681 . + 0 ID=cds-WP_086163193.1;Parent=gene-D5F88_RS01805;Dbxref=GenBank:WP_086163193.1;Name=WP_086163193.1;gbkey=CDS;gene=comGA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000250804.1;locus_tag=D5F88_RS01805;product=competence type IV pilus ATPase ComGA;protein_id=WP_086163193.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 18575 19618 . + . ID=gene-D5F88_RS01810;Name=comGB;gbkey=Gene;gene=comGB;gene_biotype=protein_coding;locus_tag=D5F88_RS01810;old_locus_tag=D5F88_01815 NZ_QYTI01000008.1 Protein Homology CDS 18575 19618 . + 0 ID=cds-WP_257638778.1;Parent=gene-D5F88_RS01810;Dbxref=GenBank:WP_257638778.1;Name=WP_257638778.1;gbkey=CDS;gene=comGB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011074699.1;locus_tag=D5F88_RS01810;product=competence type IV pilus assembly protein ComGB;protein_id=WP_257638778.1;transl_table=11 NZ_QYTI01000008.1 RefSeq pseudogene 19615 19683 . + . ID=gene-D5F88_RS01815;Name=D5F88_RS01815;end_range=19683,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS01815;old_locus_tag=D5F88_01820;partial=true;pseudo=true NZ_QYTI01000008.1 Protein Homology CDS 19615 19683 . + 0 ID=cds-D5F88_RS01815;Parent=gene-D5F88_RS01815;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=19683,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000793380.1;locus_tag=D5F88_RS01815;partial=true;product=competence type IV pilus minor pilin ComGF;pseudo=true;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 19692 21146 . - . ID=gene-D5F88_RS01820;Name=D5F88_RS01820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01820;old_locus_tag=D5F88_01825 NZ_QYTI01000008.1 Protein Homology CDS 19692 21146 . - 0 ID=cds-WP_124759426.1;Parent=gene-D5F88_RS01820;Dbxref=GenBank:WP_124759426.1;Name=WP_124759426.1;Ontology_term=GO:0015074,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001044792.1;locus_tag=D5F88_RS01820;product=recombinase family protein;protein_id=WP_124759426.1;transl_table=11 NZ_QYTI01000008.1 RefSeq gene 21270 21944 . - . ID=gene-D5F88_RS01825;Name=D5F88_RS01825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01825;old_locus_tag=D5F88_01830 NZ_QYTI01000008.1 Protein Homology CDS 21270 21944 . - 0 ID=cds-WP_016502653.1;Parent=gene-D5F88_RS01825;Dbxref=GenBank:WP_016502653.1;Name=WP_016502653.1;Ontology_term=GO:0004540;gbkey=CDS;go_function=RNA nuclease activity|0004540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502653.1;locus_tag=D5F88_RS01825;product=NYN domain-containing protein;protein_id=WP_016502653.1;transl_table=11 ##sequence-region NZ_QYTI01000080.1 1 35068 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000080.1 RefSeq region 1 35068 . + . ID=NZ_QYTI01000080.1:1..35068;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000080.1 RefSeq gene 1 764 . - . ID=gene-D5F88_RS10010;Name=D5F88_RS10010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10010;old_locus_tag=D5F88_10020;partial=true;start_range=.,1 NZ_QYTI01000080.1 Protein Homology CDS 1 764 . - 0 ID=cds-WP_142997447.1;Parent=gene-D5F88_RS10010;Dbxref=GenBank:WP_142997447.1;Name=WP_142997447.1;Ontology_term=GO:0009252,GO:0071555,GO:0005524,GO:0047480;gbkey=CDS;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647798.1;locus_tag=D5F88_RS10010;partial=true;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_142997447.1;start_range=.,1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 911 1957 . - . ID=gene-D5F88_RS10015;Name=D5F88_RS10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10015;old_locus_tag=D5F88_10025 NZ_QYTI01000080.1 Protein Homology CDS 911 1957 . - 0 ID=cds-WP_000032510.1;Parent=gene-D5F88_RS10015;Dbxref=GenBank:WP_000032510.1;Name=WP_000032510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480637.1;locus_tag=D5F88_RS10015;product=D-alanine--D-alanine ligase;protein_id=WP_000032510.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 2098 2694 . - . ID=gene-D5F88_RS10020;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=D5F88_RS10020;old_locus_tag=D5F88_10030 NZ_QYTI01000080.1 Protein Homology CDS 2098 2694 . - 0 ID=cds-WP_000966735.1;Parent=gene-D5F88_RS10020;Dbxref=GenBank:WP_000966735.1;Name=WP_000966735.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0046872;gbkey=CDS;gene=recR;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002896112.1;locus_tag=D5F88_RS10020;product=recombination mediator RecR;protein_id=WP_000966735.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 2709 4754 . - . ID=gene-D5F88_RS10025;Name=pbp2b;gbkey=Gene;gene=pbp2b;gene_biotype=protein_coding;locus_tag=D5F88_RS10025;old_locus_tag=D5F88_10035 NZ_QYTI01000080.1 Protein Homology CDS 2709 4754 . - 0 ID=cds-WP_086163303.1;Parent=gene-D5F88_RS10025;Dbxref=GenBank:WP_086163303.1;Name=WP_086163303.1;Ontology_term=GO:0009252,GO:0008658,GO:0071972;gbkey=CDS;gene=pbp2b;go_function=penicillin binding|0008658||IEA,peptidoglycan L%2CD-transpeptidase activity|0071972||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000934659.1;locus_tag=D5F88_RS10025;product=penicillin-binding protein PBP2B;protein_id=WP_086163303.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 4883 5575 . - . ID=gene-D5F88_RS10030;Name=D5F88_RS10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10030;old_locus_tag=D5F88_10040 NZ_QYTI01000080.1 Protein Homology CDS 4883 5575 . - 0 ID=cds-WP_000240135.1;Parent=gene-D5F88_RS10030;Dbxref=GenBank:WP_000240135.1;Name=WP_000240135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018029419.1;locus_tag=D5F88_RS10030;product=phosphoglycerate mutase;protein_id=WP_000240135.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 5752 6510 . - . ID=gene-D5F88_RS10035;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=D5F88_RS10035;old_locus_tag=D5F88_10045 NZ_QYTI01000080.1 Protein Homology CDS 5752 6510 . - 0 ID=cds-WP_000087883.1;Parent=gene-D5F88_RS10035;Dbxref=GenBank:WP_000087883.1;Name=WP_000087883.1;Ontology_term=GO:0006096,GO:0004807;gbkey=CDS;gene=tpiA;go_function=triose-phosphate isomerase activity|0004807||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000087908.1;locus_tag=D5F88_RS10035;product=triose-phosphate isomerase;protein_id=WP_000087883.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 6691 7887 . - . ID=gene-D5F88_RS10040;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=D5F88_RS10040;old_locus_tag=D5F88_10050 NZ_QYTI01000080.1 Protein Homology CDS 6691 7887 . - 0 ID=cds-WP_001040730.1;Parent=gene-D5F88_RS10040;Dbxref=GenBank:WP_001040730.1;Name=WP_001040730.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014335040.1;locus_tag=D5F88_RS10040;product=elongation factor Tu;protein_id=WP_001040730.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 8239 9507 . - . ID=gene-D5F88_RS10045;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=D5F88_RS10045;old_locus_tag=D5F88_10055 NZ_QYTI01000080.1 Protein Homology CDS 8239 9507 . - 0 ID=cds-WP_000687014.1;Parent=gene-D5F88_RS10045;Dbxref=GenBank:WP_000687014.1;Name=WP_000687014.1;gbkey=CDS;gene=ftsW;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000687011.1;locus_tag=D5F88_RS10045;product=cell division peptidoglycan polymerase FtsW;protein_id=WP_000687014.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 9613 12408 . - . ID=gene-D5F88_RS10050;Name=ppc;gbkey=Gene;gene=ppc;gene_biotype=protein_coding;locus_tag=D5F88_RS10050;old_locus_tag=D5F88_10060 NZ_QYTI01000080.1 Protein Homology CDS 9613 12408 . - 0 ID=cds-WP_086163302.1;Parent=gene-D5F88_RS10050;Dbxref=GenBank:WP_086163302.1;Name=WP_086163302.1;Ontology_term=GO:0006099,GO:0015977,GO:0008964;gbkey=CDS;gene=ppc;go_function=phosphoenolpyruvate carboxylase activity|0008964||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,carbon fixation|0015977||IEA;inference=COORDINATES: protein motif:HMM:NF000584.1;locus_tag=D5F88_RS10050;product=phosphoenolpyruvate carboxylase;protein_id=WP_086163302.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 12617 14416 . + . ID=gene-D5F88_RS10055;Name=pepF;gbkey=Gene;gene=pepF;gene_biotype=protein_coding;locus_tag=D5F88_RS10055;old_locus_tag=D5F88_10065 NZ_QYTI01000080.1 Protein Homology CDS 12617 14416 . + 0 ID=cds-WP_086163301.1;Parent=gene-D5F88_RS10055;Dbxref=GenBank:WP_086163301.1;Name=WP_086163301.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=pepF;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647353.1;locus_tag=D5F88_RS10055;product=oligoendopeptidase F;protein_id=WP_086163301.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 14475 14864 . - . ID=gene-D5F88_RS10060;Name=D5F88_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10060;old_locus_tag=D5F88_10070 NZ_QYTI01000080.1 Protein Homology CDS 14475 14864 . - 0 ID=cds-WP_016502778.1;Parent=gene-D5F88_RS10060;Dbxref=GenBank:WP_016502778.1;Name=WP_016502778.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000759944.1;locus_tag=D5F88_RS10060;product=DUF4430 domain-containing protein;protein_id=WP_016502778.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 14848 15372 . - . ID=gene-D5F88_RS10065;Name=D5F88_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10065;old_locus_tag=D5F88_10075 NZ_QYTI01000080.1 Protein Homology CDS 14848 15372 . - 0 ID=cds-WP_000594806.1;Parent=gene-D5F88_RS10065;Dbxref=GenBank:WP_000594806.1;Name=WP_000594806.1;Ontology_term=GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771866.1;locus_tag=D5F88_RS10065;product=ECF transporter S component;protein_id=WP_000594806.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 15530 16378 . + . ID=gene-D5F88_RS10070;Name=D5F88_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10070;old_locus_tag=D5F88_10080 NZ_QYTI01000080.1 Protein Homology CDS 15530 16378 . + 0 ID=cds-WP_001254338.1;Parent=gene-D5F88_RS10070;Dbxref=GenBank:WP_001254338.1;Name=WP_001254338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001254333.1;locus_tag=D5F88_RS10070;product=glycoside hydrolase family 25 protein;protein_id=WP_001254338.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 16411 17028 . - . ID=gene-D5F88_RS10075;Name=D5F88_RS10075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10075;old_locus_tag=D5F88_10085 NZ_QYTI01000080.1 Protein Homology CDS 16411 17028 . - 0 ID=cds-WP_086163300.1;Parent=gene-D5F88_RS10075;Dbxref=GenBank:WP_086163300.1;Name=WP_086163300.1;Ontology_term=GO:0016491,GO:0070403;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000404311.1;locus_tag=D5F88_RS10075;product=SDR family oxidoreductase;protein_id=WP_086163300.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 17323 17796 . + . ID=gene-D5F88_RS10080;Name=D5F88_RS10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10080;old_locus_tag=D5F88_10090 NZ_QYTI01000080.1 Protein Homology CDS 17323 17796 . + 0 ID=cds-WP_000038843.1;Parent=gene-D5F88_RS10080;Dbxref=GenBank:WP_000038843.1;Name=WP_000038843.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058481.1;locus_tag=D5F88_RS10080;product=aminoacyl-tRNA deacylase;protein_id=WP_000038843.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 17818 18459 . + . ID=gene-D5F88_RS10085;Name=D5F88_RS10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10085;old_locus_tag=D5F88_10095 NZ_QYTI01000080.1 Protein Homology CDS 17818 18459 . + 0 ID=cds-WP_124759251.1;Parent=gene-D5F88_RS10085;Dbxref=GenBank:WP_124759251.1;Name=WP_124759251.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000675283.1;locus_tag=D5F88_RS10085;product=histidine phosphatase family protein;protein_id=WP_124759251.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 18495 19397 . - . ID=gene-D5F88_RS10090;Name=D5F88_RS10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10090;old_locus_tag=D5F88_10100 NZ_QYTI01000080.1 Protein Homology CDS 18495 19397 . - 0 ID=cds-WP_000633102.1;Parent=gene-D5F88_RS10090;Dbxref=GenBank:WP_000633102.1;Name=WP_000633102.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000633099.1;locus_tag=D5F88_RS10090;product=HAD family hydrolase;protein_id=WP_000633102.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 19572 21062 . + . ID=gene-D5F88_RS10095;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=D5F88_RS10095;old_locus_tag=D5F88_10105 NZ_QYTI01000080.1 Protein Homology CDS 19572 21062 . + 0 ID=cds-WP_000070708.1;Parent=gene-D5F88_RS10095;Dbxref=GenBank:WP_000070708.1;Name=WP_000070708.1;Ontology_term=GO:0006430,GO:0004824,GO:0005524,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003055423.1;locus_tag=D5F88_RS10095;product=lysine--tRNA ligase;protein_id=WP_000070708.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 21137 21607 . - . ID=gene-D5F88_RS10100;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=D5F88_RS10100;old_locus_tag=D5F88_10110 NZ_QYTI01000080.1 Protein Homology CDS 21137 21607 . - 0 ID=cds-WP_016502777.1;Parent=gene-D5F88_RS10100;Dbxref=GenBank:WP_016502777.1;Name=WP_016502777.1;Ontology_term=GO:0000906,GO:0009349;gbkey=CDS;gene=ribH;go_component=riboflavin synthase complex|0009349||IEA;go_function=6%2C7-dimethyl-8-ribityllumazine synthase activity|0000906||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650902.1;locus_tag=D5F88_RS10100;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_016502777.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 21622 22815 . - . ID=gene-D5F88_RS10105;Name=D5F88_RS10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10105;old_locus_tag=D5F88_10115 NZ_QYTI01000080.1 Protein Homology CDS 21622 22815 . - 0 ID=cds-WP_000885818.1;Parent=gene-D5F88_RS10105;Dbxref=GenBank:WP_000885818.1;Name=WP_000885818.1;Ontology_term=GO:0003935,GO:0008686;gbkey=CDS;go_function=GTP cyclohydrolase II activity|0003935||IEA,3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity|0008686||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768533.1;locus_tag=D5F88_RS10105;product=bifunctional 3%2C4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II;protein_id=WP_000885818.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 22833 23483 . - . ID=gene-D5F88_RS10110;Name=D5F88_RS10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10110;old_locus_tag=D5F88_10120 NZ_QYTI01000080.1 Protein Homology CDS 22833 23483 . - 0 ID=cds-WP_000493859.1;Parent=gene-D5F88_RS10110;Dbxref=GenBank:WP_000493859.1;Name=WP_000493859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000493854.1;locus_tag=D5F88_RS10110;product=riboflavin synthase;protein_id=WP_000493859.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 23464 24573 . - . ID=gene-D5F88_RS10115;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=D5F88_RS10115;old_locus_tag=D5F88_10125 NZ_QYTI01000080.1 Protein Homology CDS 23464 24573 . - 0 ID=cds-WP_000975996.1;Parent=gene-D5F88_RS10115;Dbxref=GenBank:WP_000975996.1;Name=WP_000975996.1;Ontology_term=GO:0008703,GO:0008835;gbkey=CDS;gene=ribD;go_function=5-amino-6-(5-phosphoribosylamino)uracil reductase activity|0008703||IEA,diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|0008835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000975996.1;locus_tag=D5F88_RS10115;product=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD;protein_id=WP_000975996.1;transl_table=11 NZ_QYTI01000080.1 cmsearch riboswitch 24767 24881 . - . ID=id-NZ_QYTI01000080.1:24767..24881;Dbxref=RFAM:RF00050;Note=FMN riboswitch;bound_moiety=flavin mononucleotide;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_QYTI01000080.1 RefSeq gene 25301 26641 . + . ID=gene-D5F88_RS10120;Name=D5F88_RS10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10120;old_locus_tag=D5F88_10130 NZ_QYTI01000080.1 Protein Homology CDS 25301 26641 . + 0 ID=cds-WP_016480624.1;Parent=gene-D5F88_RS10120;Dbxref=GenBank:WP_016480624.1;Name=WP_016480624.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001073016.1;locus_tag=D5F88_RS10120;product=Nramp family divalent metal transporter;protein_id=WP_016480624.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 26743 27540 . - . ID=gene-D5F88_RS10125;Name=D5F88_RS10125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10125;old_locus_tag=D5F88_10135 NZ_QYTI01000080.1 Protein Homology CDS 26743 27540 . - 0 ID=cds-WP_016480623.1;Parent=gene-D5F88_RS10125;Dbxref=GenBank:WP_016480623.1;Name=WP_016480623.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000618018.1;locus_tag=D5F88_RS10125;product=tryptophan-rich sensory protein;protein_id=WP_016480623.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 27665 27877 . - . ID=gene-D5F88_RS10130;Name=D5F88_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10130;old_locus_tag=D5F88_10140 NZ_QYTI01000080.1 Protein Homology CDS 27665 27877 . - 0 ID=cds-WP_001288869.1;Parent=gene-D5F88_RS10130;Dbxref=GenBank:WP_001288869.1;Name=WP_001288869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771805.1;locus_tag=D5F88_RS10130;product=YdbC family protein;protein_id=WP_001288869.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 28004 29290 . - . ID=gene-D5F88_RS10135;Name=D5F88_RS10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10135;old_locus_tag=D5F88_10145 NZ_QYTI01000080.1 Protein Homology CDS 28004 29290 . - 0 ID=cds-WP_016502776.1;Parent=gene-D5F88_RS10135;Dbxref=GenBank:WP_016502776.1;Name=WP_016502776.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648447.1;locus_tag=D5F88_RS10135;product=peptidase U32 family protein;protein_id=WP_016502776.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 29420 30346 . - . ID=gene-D5F88_RS10140;Name=D5F88_RS10140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10140;old_locus_tag=D5F88_10150 NZ_QYTI01000080.1 Protein Homology CDS 29420 30346 . - 0 ID=cds-WP_016502775.1;Parent=gene-D5F88_RS10140;Dbxref=GenBank:WP_016502775.1;Name=WP_016502775.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012997850.1;locus_tag=D5F88_RS10140;product=peptidase U32 family protein;protein_id=WP_016502775.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 30687 30962 . + . ID=gene-D5F88_RS10145;Name=D5F88_RS10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10145;old_locus_tag=D5F88_10155 NZ_QYTI01000080.1 Protein Homology CDS 30687 30962 . + 0 ID=cds-WP_000097985.1;Parent=gene-D5F88_RS10145;Dbxref=GenBank:WP_000097985.1;Name=WP_000097985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000097986.1;locus_tag=D5F88_RS10145;product=DUF3270 domain-containing protein;protein_id=WP_000097985.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 31005 31436 . - . ID=gene-D5F88_RS10150;Name=D5F88_RS10150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10150;old_locus_tag=D5F88_10160 NZ_QYTI01000080.1 Protein Homology CDS 31005 31436 . - 0 ID=cds-WP_000039971.1;Parent=gene-D5F88_RS10150;Dbxref=GenBank:WP_000039971.1;Name=WP_000039971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480620.1;locus_tag=D5F88_RS10150;product=YtxH domain-containing protein;protein_id=WP_000039971.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 31433 31831 . - . ID=gene-D5F88_RS10155;Name=D5F88_RS10155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10155;old_locus_tag=D5F88_10165 NZ_QYTI01000080.1 Protein Homology CDS 31433 31831 . - 0 ID=cds-WP_086163298.1;Parent=gene-D5F88_RS10155;Dbxref=GenBank:WP_086163298.1;Name=WP_086163298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502774.1;locus_tag=D5F88_RS10155;product=DUF948 domain-containing protein;protein_id=WP_086163298.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 31846 32619 . - . ID=gene-D5F88_RS10160;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=D5F88_RS10160;old_locus_tag=D5F88_10170 NZ_QYTI01000080.1 Protein Homology CDS 31846 32619 . - 0 ID=cds-WP_000609728.1;Parent=gene-D5F88_RS10160;Dbxref=GenBank:WP_000609728.1;Name=WP_000609728.1;Ontology_term=GO:0009249,GO:0008961,GO:0016020;gbkey=CDS;gene=lgt;go_component=membrane|0016020||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000609727.1;locus_tag=D5F88_RS10160;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_000609728.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 32612 33547 . - . ID=gene-D5F88_RS10165;Name=hprK;gbkey=Gene;gene=hprK;gene_biotype=protein_coding;locus_tag=D5F88_RS10165;old_locus_tag=D5F88_10175 NZ_QYTI01000080.1 Protein Homology CDS 32612 33547 . - 0 ID=cds-WP_000301753.1;Parent=gene-D5F88_RS10165;Dbxref=GenBank:WP_000301753.1;Name=WP_000301753.1;Ontology_term=GO:0000160,GO:0006109,GO:0000155,GO:0005524;gbkey=CDS;gene=hprK;go_function=phosphorelay sensor kinase activity|0000155||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of carbohydrate metabolic process|0006109||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767755.1;locus_tag=D5F88_RS10165;product=HPr(Ser) kinase/phosphatase;protein_id=WP_000301753.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 33775 34038 . - . ID=gene-D5F88_RS10175;Name=D5F88_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10175;old_locus_tag=D5F88_10185 NZ_QYTI01000080.1 Protein Homology CDS 33775 34038 . - 0 ID=cds-WP_086163297.1;Parent=gene-D5F88_RS10175;Dbxref=GenBank:WP_086163297.1;Name=WP_086163297.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771968.1;locus_tag=D5F88_RS10175;product=PspC domain-containing protein;protein_id=WP_086163297.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 34107 34577 . - . ID=gene-D5F88_RS10180;Name=D5F88_RS10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10180;old_locus_tag=D5F88_10190 NZ_QYTI01000080.1 Protein Homology CDS 34107 34577 . - 0 ID=cds-WP_000366648.1;Parent=gene-D5F88_RS10180;Dbxref=GenBank:WP_000366648.1;Name=WP_000366648.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000366650.1;locus_tag=D5F88_RS10180;product=SprT family protein;protein_id=WP_000366648.1;transl_table=11 NZ_QYTI01000080.1 RefSeq gene 34540 35068 . - . ID=gene-D5F88_RS10185;Name=D5F88_RS10185;end_range=35068,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10185;old_locus_tag=D5F88_10195;partial=true NZ_QYTI01000080.1 Protein Homology CDS 34540 35068 . - 1 ID=cds-WP_124773370.1;Parent=gene-D5F88_RS10185;Dbxref=GenBank:WP_124773370.1;Name=WP_124773370.1;Ontology_term=GO:0003676;end_range=35068,.;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767169.1;locus_tag=D5F88_RS10185;partial=true;product=S1 RNA-binding domain-containing protein;protein_id=WP_124773370.1;transl_table=11 ##sequence-region NZ_QYTI01000081.1 1 35207 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000081.1 RefSeq region 1 35207 . + . ID=NZ_QYTI01000081.1:1..35207;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000081.1 RefSeq gene 1 396 . - . ID=gene-D5F88_RS10190;Name=D5F88_RS10190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10190;old_locus_tag=D5F88_10200;partial=true;start_range=.,1 NZ_QYTI01000081.1 Protein Homology CDS 1 396 . - 0 ID=cds-WP_185696286.1;Parent=gene-D5F88_RS10190;Dbxref=GenBank:WP_185696286.1;Name=WP_185696286.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002947913.1;locus_tag=D5F88_RS10190;partial=true;product=FAD-dependent oxidoreductase;protein_id=WP_185696286.1;start_range=.,1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 510 1208 . - . ID=gene-D5F88_RS10195;Name=D5F88_RS10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10195;old_locus_tag=D5F88_10205 NZ_QYTI01000081.1 Protein Homology CDS 510 1208 . - 0 ID=cds-WP_000936162.1;Parent=gene-D5F88_RS10195;Dbxref=GenBank:WP_000936162.1;Name=WP_000936162.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000936162.1;locus_tag=D5F88_RS10195;product=GntR family transcriptional regulator;protein_id=WP_000936162.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 1421 2983 . + . ID=gene-D5F88_RS10200;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=D5F88_RS10200;old_locus_tag=D5F88_10210 NZ_QYTI01000081.1 Protein Homology CDS 1421 2983 . + 0 ID=cds-WP_000129872.1;Parent=gene-D5F88_RS10200;Dbxref=GenBank:WP_000129872.1;Name=WP_000129872.1;Ontology_term=GO:0006177,GO:0003922,GO:0005524,GO:0016462;gbkey=CDS;gene=guaA;go_function=GMP synthase (glutamine-hydrolyzing) activity|0003922||IEA,ATP binding|0005524||IEA,pyrophosphatase activity|0016462||IEA;go_process=GMP biosynthetic process|0006177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009880616.1;locus_tag=D5F88_RS10200;product=glutamine-hydrolyzing GMP synthase;protein_id=WP_000129872.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 3253 4380 . + . ID=gene-D5F88_RS10205;Name=D5F88_RS10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10205;old_locus_tag=D5F88_10215 NZ_QYTI01000081.1 Protein Homology CDS 3253 4380 . + 0 ID=cds-WP_000547446.1;Parent=gene-D5F88_RS10205;Dbxref=GenBank:WP_000547446.1;Name=WP_000547446.1;Ontology_term=GO:0006812,GO:1902600,GO:0015078,GO:0015297,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=proton transmembrane transporter activity|0015078||IEA,antiporter activity|0015297||IEA;go_process=monoatomic cation transport|0006812||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000547442.1;locus_tag=D5F88_RS10205;product=cation:proton antiporter;protein_id=WP_000547446.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 4444 5406 . - . ID=gene-D5F88_RS10210;Name=D5F88_RS10210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10210;old_locus_tag=D5F88_10220 NZ_QYTI01000081.1 Protein Homology CDS 4444 5406 . - 0 ID=cds-WP_086163328.1;Parent=gene-D5F88_RS10210;Dbxref=GenBank:WP_086163328.1;Name=WP_086163328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017766755.1;locus_tag=D5F88_RS10210;product=DUF1002 domain-containing protein;protein_id=WP_086163328.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 5560 5973 . - . ID=gene-D5F88_RS10215;Name=gloA2;gbkey=Gene;gene=gloA2;gene_biotype=protein_coding;locus_tag=D5F88_RS10215;old_locus_tag=D5F88_10225 NZ_QYTI01000081.1 Protein Homology CDS 5560 5973 . - 0 ID=cds-WP_000767937.1;Parent=gene-D5F88_RS10215;Dbxref=GenBank:WP_000767937.1;Name=WP_000767937.1;gbkey=CDS;gene=gloA2;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644319.1;locus_tag=D5F88_RS10215;product=SMU1112c/YaeR family gloxylase I-like metalloprotein;protein_id=WP_000767937.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 5989 6732 . - . ID=gene-D5F88_RS10220;Name=D5F88_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10220;old_locus_tag=D5F88_10230 NZ_QYTI01000081.1 Protein Homology CDS 5989 6732 . - 0 ID=cds-WP_001244682.1;Parent=gene-D5F88_RS10220;Dbxref=GenBank:WP_001244682.1;Name=WP_001244682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649516.1;locus_tag=D5F88_RS10220;product=class A sortase;protein_id=WP_001244682.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 6739 9198 . - . ID=gene-D5F88_RS10225;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=D5F88_RS10225;old_locus_tag=D5F88_10235 NZ_QYTI01000081.1 Protein Homology CDS 6739 9198 . - 0 ID=cds-WP_001152981.1;Parent=gene-D5F88_RS10225;Dbxref=GenBank:WP_001152981.1;Name=WP_001152981.1;Ontology_term=GO:0006259,GO:0006265,GO:0003677,GO:0003916,GO:0003918,GO:0005524;gbkey=CDS;gene=gyrA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA metabolic process|0006259||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767485.1;locus_tag=D5F88_RS10225;product=DNA gyrase subunit A;protein_id=WP_001152981.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 9437 10426 . + . ID=gene-D5F88_RS10230;Name=D5F88_RS10230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10230;old_locus_tag=D5F88_10240 NZ_QYTI01000081.1 Protein Homology CDS 9437 10426 . + 0 ID=cds-WP_000127487.1;Parent=gene-D5F88_RS10230;Dbxref=GenBank:WP_000127487.1;Name=WP_000127487.1;Ontology_term=GO:0006096,GO:0004459,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=L-lactate dehydrogenase (NAD+) activity|0004459||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019768616.1;locus_tag=D5F88_RS10230;product=L-lactate dehydrogenase;protein_id=WP_000127487.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 10547 11917 . - . ID=gene-D5F88_RS10235;Name=nox;gbkey=Gene;gene=nox;gene_biotype=protein_coding;locus_tag=D5F88_RS10235;old_locus_tag=D5F88_10245 NZ_QYTI01000081.1 Protein Homology CDS 10547 11917 . - 0 ID=cds-WP_000036813.1;Parent=gene-D5F88_RS10235;Dbxref=GenBank:WP_000036813.1;Name=WP_000036813.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;gene=nox;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647149.1;locus_tag=D5F88_RS10235;product=H2O-forming NADH oxidase;protein_id=WP_000036813.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 12122 13078 . - . ID=gene-D5F88_RS10240;Name=D5F88_RS10240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10240;old_locus_tag=D5F88_10250 NZ_QYTI01000081.1 Protein Homology CDS 12122 13078 . - 0 ID=cds-WP_086163325.1;Parent=gene-D5F88_RS10240;Dbxref=GenBank:WP_086163325.1;Name=WP_086163325.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000060306.1;locus_tag=D5F88_RS10240;product=ABC transporter permease;protein_id=WP_086163325.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 13080 14141 . - . ID=gene-D5F88_RS10245;Name=D5F88_RS10245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10245;old_locus_tag=D5F88_10255 NZ_QYTI01000081.1 Protein Homology CDS 13080 14141 . - 0 ID=cds-WP_000036988.1;Parent=gene-D5F88_RS10245;Dbxref=GenBank:WP_000036988.1;Name=WP_000036988.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768037.1;locus_tag=D5F88_RS10245;product=ABC transporter permease;protein_id=WP_000036988.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 14134 15669 . - . ID=gene-D5F88_RS10250;Name=D5F88_RS10250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10250;old_locus_tag=D5F88_10260 NZ_QYTI01000081.1 Protein Homology CDS 14134 15669 . - 0 ID=cds-WP_086163324.1;Parent=gene-D5F88_RS10250;Dbxref=GenBank:WP_086163324.1;Name=WP_086163324.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000193228.1;locus_tag=D5F88_RS10250;product=ABC transporter ATP-binding protein;protein_id=WP_086163324.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 15814 16863 . - . ID=gene-D5F88_RS10255;Name=D5F88_RS10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10255;old_locus_tag=D5F88_10265 NZ_QYTI01000081.1 Protein Homology CDS 15814 16863 . - 0 ID=cds-WP_001034779.1;Parent=gene-D5F88_RS10255;Dbxref=GenBank:WP_001034779.1;Name=WP_001034779.1;Ontology_term=GO:0016020,GO:0055052;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019315854.1;locus_tag=D5F88_RS10255;product=BMP family lipoprotein;protein_id=WP_001034779.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 16927 17316 . - . ID=gene-D5F88_RS10260;Name=D5F88_RS10260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10260;old_locus_tag=D5F88_10270 NZ_QYTI01000081.1 Protein Homology CDS 16927 17316 . - 0 ID=cds-WP_000526762.1;Parent=gene-D5F88_RS10260;Dbxref=GenBank:WP_000526762.1;Name=WP_000526762.1;Ontology_term=GO:0008655,GO:0004126,GO:0008270;gbkey=CDS;go_function=cytidine deaminase activity|0004126||IEA,zinc ion binding|0008270||IEA;go_process=pyrimidine-containing compound salvage|0008655||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000526762.1;locus_tag=D5F88_RS10260;product=cytidine deaminase;protein_id=WP_000526762.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 17642 18232 . - . ID=gene-D5F88_RS10265;Name=D5F88_RS10265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10265;old_locus_tag=D5F88_10275 NZ_QYTI01000081.1 Protein Homology CDS 17642 18232 . - 0 ID=cds-WP_000002665.1;Parent=gene-D5F88_RS10265;Dbxref=GenBank:WP_000002665.1;Name=WP_000002665.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649520.1;locus_tag=D5F88_RS10265;product=class I SAM-dependent methyltransferase;protein_id=WP_000002665.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 18338 19258 . + . ID=gene-D5F88_RS10270;Name=coaA;gbkey=Gene;gene=coaA;gene_biotype=protein_coding;locus_tag=D5F88_RS10270;old_locus_tag=D5F88_10280 NZ_QYTI01000081.1 Protein Homology CDS 18338 19258 . + 0 ID=cds-WP_001058331.1;Parent=gene-D5F88_RS10270;Dbxref=GenBank:WP_001058331.1;Name=WP_001058331.1;Ontology_term=GO:0015937,GO:0004594;gbkey=CDS;gene=coaA;go_function=pantothenate kinase activity|0004594||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480725.1;locus_tag=D5F88_RS10270;product=type I pantothenate kinase;protein_id=WP_001058331.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 19312 19560 . + . ID=gene-D5F88_RS10275;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=D5F88_RS10275;old_locus_tag=D5F88_10285 NZ_QYTI01000081.1 Protein Homology CDS 19312 19560 . + 0 ID=cds-WP_001872296.1;Parent=gene-D5F88_RS10275;Dbxref=GenBank:WP_001872296.1;Name=WP_001872296.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsT;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008808726.1;locus_tag=D5F88_RS10275;product=30S ribosomal protein S20;protein_id=WP_001872296.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 19645 20478 . - . ID=gene-D5F88_RS10280;Name=D5F88_RS10280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10280;old_locus_tag=D5F88_10290 NZ_QYTI01000081.1 Protein Homology CDS 19645 20478 . - 0 ID=cds-WP_017649521.1;Parent=gene-D5F88_RS10280;Dbxref=GenBank:WP_017649521.1;Name=WP_017649521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649521.1;locus_tag=D5F88_RS10280;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_017649521.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 20492 21121 . - . ID=gene-D5F88_RS10285;Name=D5F88_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10285;old_locus_tag=D5F88_10295 NZ_QYTI01000081.1 Protein Homology CDS 20492 21121 . - 0 ID=cds-WP_000891276.1;Parent=gene-D5F88_RS10285;Dbxref=GenBank:WP_000891276.1;Name=WP_000891276.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009854102.1;locus_tag=D5F88_RS10285;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_000891276.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 21131 21772 . - . ID=gene-D5F88_RS10290;Name=D5F88_RS10290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10290;old_locus_tag=D5F88_10300 NZ_QYTI01000081.1 Protein Homology CDS 21131 21772 . - 0 ID=cds-WP_000120401.1;Parent=gene-D5F88_RS10290;Dbxref=GenBank:WP_000120401.1;Name=WP_000120401.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019323647.1;locus_tag=D5F88_RS10290;product=amino acid ABC transporter permease;protein_id=WP_000120401.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 21908 22237 . - . ID=gene-D5F88_RS10295;Name=D5F88_RS10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10295;old_locus_tag=D5F88_10305 NZ_QYTI01000081.1 Protein Homology CDS 21908 22237 . - 0 ID=cds-WP_000056782.1;Parent=gene-D5F88_RS10295;Dbxref=GenBank:WP_000056782.1;Name=WP_000056782.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000056782.1;locus_tag=D5F88_RS10295;product=zinc ribbon domain-containing protein YjdM;protein_id=WP_000056782.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 22399 24213 . - . ID=gene-D5F88_RS10300;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=D5F88_RS10300;old_locus_tag=D5F88_10310 NZ_QYTI01000081.1 Protein Homology CDS 22399 24213 . - 0 ID=cds-WP_000334317.1;Parent=gene-D5F88_RS10300;Dbxref=GenBank:WP_000334317.1;Name=WP_000334317.1;Ontology_term=GO:1901137,GO:0004360;gbkey=CDS;gene=glmS;go_function=glutamine-fructose-6-phosphate transaminase (isomerizing) activity|0004360||IEA;go_process=carbohydrate derivative biosynthetic process|1901137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019804802.1;locus_tag=D5F88_RS10300;product=glutamine--fructose-6-phosphate transaminase (isomerizing);protein_id=WP_000334317.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 24482 25039 . - . ID=gene-D5F88_RS10310;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=D5F88_RS10310;old_locus_tag=D5F88_10320 NZ_QYTI01000081.1 Protein Homology CDS 24482 25039 . - 0 ID=cds-WP_000240773.1;Parent=gene-D5F88_RS10310;Dbxref=GenBank:WP_000240773.1;Name=WP_000240773.1;Ontology_term=GO:0006465,GO:0009306,GO:0004252,GO:0016020;gbkey=CDS;gene=lepB;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001931829.1;locus_tag=D5F88_RS10310;product=signal peptidase I;protein_id=WP_000240773.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 25210 26712 . - . ID=gene-D5F88_RS10315;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=D5F88_RS10315;old_locus_tag=D5F88_10325 NZ_QYTI01000081.1 Protein Homology CDS 25210 26712 . - 0 ID=cds-WP_001042782.1;Parent=gene-D5F88_RS10315;Dbxref=GenBank:WP_001042782.1;Name=WP_001042782.1;Ontology_term=GO:0006096,GO:0000287,GO:0004743,GO:0030955;gbkey=CDS;gene=pyk;go_function=magnesium ion binding|0000287||IEA,pyruvate kinase activity|0004743||IEA,potassium ion binding|0030955||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018366040.1;locus_tag=D5F88_RS10315;product=pyruvate kinase;protein_id=WP_001042782.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 26761 27783 . - . ID=gene-D5F88_RS10320;Name=pfkA;gbkey=Gene;gene=pfkA;gene_biotype=protein_coding;locus_tag=D5F88_RS10320;old_locus_tag=D5F88_10330 NZ_QYTI01000081.1 Protein Homology CDS 26761 27783 . - 0 ID=cds-WP_000820831.1;Parent=gene-D5F88_RS10320;Dbxref=GenBank:WP_000820831.1;Name=WP_000820831.1;Ontology_term=GO:0006002,GO:0006096,GO:0005524;gbkey=CDS;gene=pfkA;go_function=ATP binding|0005524||IEA;go_process=fructose 6-phosphate metabolic process|0006002||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767829.1;locus_tag=D5F88_RS10320;product=6-phosphofructokinase;protein_id=WP_000820831.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 27864 30968 . - . ID=gene-D5F88_RS10325;Name=D5F88_RS10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10325;old_locus_tag=D5F88_10335 NZ_QYTI01000081.1 Protein Homology CDS 27864 30968 . - 0 ID=cds-WP_016480722.1;Parent=gene-D5F88_RS10325;Dbxref=GenBank:WP_016480722.1;Name=WP_016480722.1;Ontology_term=GO:0006260,GO:0003676,GO:0008408;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000457960.1;locus_tag=D5F88_RS10325;product=DNA polymerase III subunit alpha;protein_id=WP_016480722.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 31113 31481 . + . ID=gene-D5F88_RS10330;Name=D5F88_RS10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10330;old_locus_tag=D5F88_10340 NZ_QYTI01000081.1 Protein Homology CDS 31113 31481 . + 0 ID=cds-WP_000312256.1;Parent=gene-D5F88_RS10330;Dbxref=GenBank:WP_000312256.1;Name=WP_000312256.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000312257.1;locus_tag=D5F88_RS10330;product=GntR family transcriptional regulator;protein_id=WP_000312256.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 31482 32180 . + . ID=gene-D5F88_RS10335;Name=D5F88_RS10335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10335;old_locus_tag=D5F88_10345 NZ_QYTI01000081.1 Protein Homology CDS 31482 32180 . + 0 ID=cds-WP_000192683.1;Parent=gene-D5F88_RS10335;Dbxref=GenBank:WP_000192683.1;Name=WP_000192683.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000192687.1;locus_tag=D5F88_RS10335;product=ABC transporter ATP-binding protein;protein_id=WP_000192683.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 32192 32974 . + . ID=gene-D5F88_RS10340;Name=D5F88_RS10340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10340;old_locus_tag=D5F88_10350 NZ_QYTI01000081.1 Protein Homology CDS 32192 32974 . + 0 ID=cds-WP_016480721.1;Parent=gene-D5F88_RS10340;Dbxref=GenBank:WP_016480721.1;Name=WP_016480721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645320.1;locus_tag=D5F88_RS10340;product=hypothetical protein;protein_id=WP_016480721.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 33011 33622 . - . ID=gene-D5F88_RS10345;Name=D5F88_RS10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10345;old_locus_tag=D5F88_10355 NZ_QYTI01000081.1 Protein Homology CDS 33011 33622 . - 0 ID=cds-WP_001056394.1;Parent=gene-D5F88_RS10345;Dbxref=GenBank:WP_001056394.1;Name=WP_001056394.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001056395.1;locus_tag=D5F88_RS10345;product=TVP38/TMEM64 family protein;protein_id=WP_001056394.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 33715 34064 . + . ID=gene-D5F88_RS10350;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=D5F88_RS10350;old_locus_tag=D5F88_10360 NZ_QYTI01000081.1 cmsearch tmRNA 33715 34064 . + . ID=rna-D5F88_RS10350;Parent=gene-D5F88_RS10350;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS10350;product=transfer-messenger RNA NZ_QYTI01000081.1 cmsearch exon 33715 34064 . + . ID=exon-D5F88_RS10350-1;Parent=rna-D5F88_RS10350;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=D5F88_RS10350;product=transfer-messenger RNA NZ_QYTI01000081.1 RefSeq gene 34211 34396 . - . ID=gene-D5F88_RS10355;Name=D5F88_RS10355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10355;old_locus_tag=D5F88_10365 NZ_QYTI01000081.1 Protein Homology CDS 34211 34396 . - 0 ID=cds-WP_124759456.1;Parent=gene-D5F88_RS10355;Dbxref=GenBank:WP_124759456.1;Name=WP_124759456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011285559.1;locus_tag=D5F88_RS10355;product=competence regulator inhibitor paratox;protein_id=WP_124759456.1;transl_table=11 NZ_QYTI01000081.1 RefSeq gene 34613 34852 . + . ID=gene-D5F88_RS10360;Name=D5F88_RS10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10360;old_locus_tag=D5F88_10370 NZ_QYTI01000081.1 Protein Homology CDS 34613 34852 . + 0 ID=cds-WP_016480483.1-2;Parent=gene-D5F88_RS10360;Dbxref=GenBank:WP_016480483.1;Name=WP_016480483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003055856.1;locus_tag=D5F88_RS10360;product=hypothetical protein;protein_id=WP_016480483.1;transl_table=11 NZ_QYTI01000081.1 RefSeq pseudogene 34891 35207 . + . ID=gene-D5F88_RS10365;Name=D5F88_RS10365;end_range=35207,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS10365;old_locus_tag=D5F88_10375;partial=true;pseudo=true NZ_QYTI01000081.1 Protein Homology CDS 34891 35207 . + 0 ID=cds-D5F88_RS10365;Parent=gene-D5F88_RS10365;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=35207,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480482.1;locus_tag=D5F88_RS10365;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000082.1 1 9302 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000082.1 RefSeq region 1 9302 . + . ID=NZ_QYTI01000082.1:1..9302;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000082.1 RefSeq gene 1 466 . + . ID=gene-D5F88_RS10370;Name=D5F88_RS10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10370;old_locus_tag=D5F88_10380;partial=true;start_range=.,1 NZ_QYTI01000082.1 Protein Homology CDS 1 466 . + 1 ID=cds-WP_124773372.1;Parent=gene-D5F88_RS10370;Dbxref=GenBank:WP_124773372.1;Name=WP_124773372.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS10370;partial=true;product=IS3 family transposase;protein_id=WP_124773372.1;start_range=.,1;transl_table=11 NZ_QYTI01000082.1 RefSeq pseudogene 500 1141 . - . ID=gene-D5F88_RS10375;Name=D5F88_RS10375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS10375;old_locus_tag=D5F88_10385;partial=true;pseudo=true;start_range=.,500 NZ_QYTI01000082.1 Protein Homology CDS 500 1141 . - 0 ID=cds-D5F88_RS10375;Parent=gene-D5F88_RS10375;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771642.1;locus_tag=D5F88_RS10375;partial=true;product=DEAD/DEAH box helicase;pseudo=true;start_range=.,500;transl_table=11 NZ_QYTI01000082.1 RefSeq gene 1197 1841 . + . ID=gene-D5F88_RS10380;Name=D5F88_RS10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10380;old_locus_tag=D5F88_10390 NZ_QYTI01000082.1 Protein Homology CDS 1197 1841 . + 0 ID=cds-WP_001108145.1;Parent=gene-D5F88_RS10380;Dbxref=GenBank:WP_001108145.1;Name=WP_001108145.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001108146.1;locus_tag=D5F88_RS10380;product=YigZ family protein;protein_id=WP_001108145.1;transl_table=11 NZ_QYTI01000082.1 RefSeq gene 1932 2858 . + . ID=gene-D5F88_RS10385;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=D5F88_RS10385;old_locus_tag=D5F88_10395 NZ_QYTI01000082.1 Protein Homology CDS 1932 2858 . + 0 ID=cds-WP_000036946.1;Parent=gene-D5F88_RS10385;Dbxref=GenBank:WP_000036946.1;Name=WP_000036946.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysK;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646141.1;locus_tag=D5F88_RS10385;product=cysteine synthase A;protein_id=WP_000036946.1;transl_table=11 NZ_QYTI01000082.1 RefSeq gene 3010 4098 . - . ID=gene-D5F88_RS10390;Name=D5F88_RS10390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10390;old_locus_tag=D5F88_10400 NZ_QYTI01000082.1 Protein Homology CDS 3010 4098 . - 0 ID=cds-WP_000862118.1;Parent=gene-D5F88_RS10390;Dbxref=GenBank:WP_000862118.1;Name=WP_000862118.1;Ontology_term=GO:0008270,GO:0008888,GO:0030554;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,glycerol dehydrogenase (NAD+) activity|0008888||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000862121.1;locus_tag=D5F88_RS10390;product=glycerol dehydrogenase;protein_id=WP_000862118.1;transl_table=11 NZ_QYTI01000082.1 RefSeq gene 4166 4834 . - . ID=gene-D5F88_RS10395;Name=D5F88_RS10395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10395;old_locus_tag=D5F88_10405 NZ_QYTI01000082.1 Protein Homology CDS 4166 4834 . - 0 ID=cds-WP_000394894.1;Parent=gene-D5F88_RS10395;Dbxref=GenBank:WP_000394894.1;Name=WP_000394894.1;Ontology_term=GO:0005975,GO:0016832;gbkey=CDS;go_function=aldehyde-lyase activity|0016832||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000394891.1;locus_tag=D5F88_RS10395;product=fructose-6-phosphate aldolase;protein_id=WP_000394894.1;transl_table=11 NZ_QYTI01000082.1 RefSeq gene 4844 7300 . - . ID=gene-D5F88_RS10400;Name=D5F88_RS10400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10400;old_locus_tag=D5F88_10410 NZ_QYTI01000082.1 Protein Homology CDS 4844 7300 . - 0 ID=cds-WP_086163223.1;Parent=gene-D5F88_RS10400;Dbxref=GenBank:WP_086163223.1;Name=WP_086163223.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000166131.1;locus_tag=D5F88_RS10400;product=glycyl radical protein;protein_id=WP_086163223.1;transl_table=11 NZ_QYTI01000082.1 RefSeq gene 7481 8782 . - . ID=gene-D5F88_RS10405;Name=D5F88_RS10405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10405;old_locus_tag=D5F88_10415 NZ_QYTI01000082.1 Protein Homology CDS 7481 8782 . - 0 ID=cds-WP_000032671.1;Parent=gene-D5F88_RS10405;Dbxref=GenBank:WP_000032671.1;Name=WP_000032671.1;Ontology_term=GO:0009401,GO:0016773,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000032678.1;locus_tag=D5F88_RS10405;product=PTS sugar transporter subunit IIC;protein_id=WP_000032671.1;transl_table=11 NZ_QYTI01000082.1 RefSeq gene 8784 9104 . - . ID=gene-D5F88_RS10410;Name=D5F88_RS10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10410;old_locus_tag=D5F88_10420 NZ_QYTI01000082.1 Protein Homology CDS 8784 9104 . - 0 ID=cds-WP_000590363.1;Parent=gene-D5F88_RS10410;Dbxref=GenBank:WP_000590363.1;Name=WP_000590363.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644439.1;locus_tag=D5F88_RS10410;product=PTS sugar transporter subunit IIB;protein_id=WP_000590363.1;transl_table=11 NZ_QYTI01000082.1 RefSeq gene 9121 9302 . - . ID=gene-D5F88_RS10415;Name=D5F88_RS10415;end_range=9302,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10415;old_locus_tag=D5F88_10425;partial=true NZ_QYTI01000082.1 Protein Homology CDS 9121 9302 . - 2 ID=cds-WP_142997448.1;Parent=gene-D5F88_RS10415;Dbxref=GenBank:WP_142997448.1;Name=WP_142997448.1;end_range=9302,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000402898.1;locus_tag=D5F88_RS10415;partial=true;product=PTS lactose/cellobiose transporter subunit IIA;protein_id=WP_142997448.1;transl_table=11 ##sequence-region NZ_QYTI01000083.1 1 44532 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000083.1 RefSeq region 1 44532 . + . ID=NZ_QYTI01000083.1:1..44532;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000083.1 RefSeq gene 1 431 . - . ID=gene-D5F88_RS10420;Name=D5F88_RS10420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10420;old_locus_tag=D5F88_10430;partial=true;start_range=.,1 NZ_QYTI01000083.1 Protein Homology CDS 1 431 . - 0 ID=cds-WP_185696287.1;Parent=gene-D5F88_RS10420;Dbxref=GenBank:WP_185696287.1;Name=WP_185696287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767264.1;locus_tag=D5F88_RS10420;partial=true;product=macro domain-containing protein;protein_id=WP_185696287.1;start_range=.,1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 424 756 . - . ID=gene-D5F88_RS10425;Name=D5F88_RS10425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10425;old_locus_tag=D5F88_10435 NZ_QYTI01000083.1 Protein Homology CDS 424 756 . - 0 ID=cds-WP_000717326.1;Parent=gene-D5F88_RS10425;Dbxref=GenBank:WP_000717326.1;Name=WP_000717326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000717324.1;locus_tag=D5F88_RS10425;product=glycine cleavage system protein H;protein_id=WP_000717326.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 785 1771 . - . ID=gene-D5F88_RS10430;Name=D5F88_RS10430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10430;old_locus_tag=D5F88_10440 NZ_QYTI01000083.1 Protein Homology CDS 785 1771 . - 0 ID=cds-WP_016502895.1;Parent=gene-D5F88_RS10430;Dbxref=GenBank:WP_016502895.1;Name=WP_016502895.1;Ontology_term=GO:0010181,GO:0016491;gbkey=CDS;go_function=FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000778222.1;locus_tag=D5F88_RS10430;product=LLM class flavin-dependent oxidoreductase;protein_id=WP_016502895.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 1768 2967 . - . ID=gene-D5F88_RS10435;Name=D5F88_RS10435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10435;old_locus_tag=D5F88_10445 NZ_QYTI01000083.1 Protein Homology CDS 1768 2967 . - 0 ID=cds-WP_016502896.1;Parent=gene-D5F88_RS10435;Dbxref=GenBank:WP_016502896.1;Name=WP_016502896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649443.1;locus_tag=D5F88_RS10435;product=NADH-dependent flavin oxidoreductase;protein_id=WP_016502896.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 2960 3796 . - . ID=gene-D5F88_RS10440;Name=D5F88_RS10440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10440;old_locus_tag=D5F88_10450 NZ_QYTI01000083.1 Protein Homology CDS 2960 3796 . - 0 ID=cds-WP_086163349.1;Parent=gene-D5F88_RS10440;Dbxref=GenBank:WP_086163349.1;Name=WP_086163349.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000455162.1;locus_tag=D5F88_RS10440;product=lipoate--protein ligase family protein;protein_id=WP_086163349.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 3950 4636 . + . ID=gene-D5F88_RS10445;Name=coaB;gbkey=Gene;gene=coaB;gene_biotype=protein_coding;locus_tag=D5F88_RS10445;old_locus_tag=D5F88_10455 NZ_QYTI01000083.1 Protein Homology CDS 3950 4636 . + 0 ID=cds-WP_086163357.1;Parent=gene-D5F88_RS10445;Dbxref=GenBank:WP_086163357.1;Name=WP_086163357.1;Ontology_term=GO:0015937,GO:0004632;gbkey=CDS;gene=coaB;go_function=phosphopantothenate--cysteine ligase activity|0004632||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019320019.1;locus_tag=D5F88_RS10445;product=phosphopantothenate--cysteine ligase;protein_id=WP_086163357.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 4629 5171 . + . ID=gene-D5F88_RS10450;Name=coaC;gbkey=Gene;gene=coaC;gene_biotype=protein_coding;locus_tag=D5F88_RS10450;old_locus_tag=D5F88_10460 NZ_QYTI01000083.1 Protein Homology CDS 4629 5171 . + 0 ID=cds-WP_000595814.1;Parent=gene-D5F88_RS10450;Dbxref=GenBank:WP_000595814.1;Name=WP_000595814.1;Ontology_term=GO:0015937,GO:0004633;gbkey=CDS;gene=coaC;go_function=phosphopantothenoylcysteine decarboxylase activity|0004633||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000595815.1;locus_tag=D5F88_RS10450;product=phosphopantothenoylcysteine decarboxylase;protein_id=WP_000595814.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 5217 5789 . + . ID=gene-D5F88_RS10455;Name=D5F88_RS10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10455;old_locus_tag=D5F88_10465 NZ_QYTI01000083.1 Protein Homology CDS 5217 5789 . + 0 ID=cds-WP_000728786.1;Parent=gene-D5F88_RS10455;Dbxref=GenBank:WP_000728786.1;Name=WP_000728786.1;Ontology_term=GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480791.1;locus_tag=D5F88_RS10455;product=ECF transporter S component;protein_id=WP_000728786.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 5899 7617 . + . ID=gene-D5F88_RS10460;Name=D5F88_RS10460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10460;old_locus_tag=D5F88_10470 NZ_QYTI01000083.1 Protein Homology CDS 5899 7617 . + 0 ID=cds-WP_000222544.1;Parent=gene-D5F88_RS10460;Dbxref=GenBank:WP_000222544.1;Name=WP_000222544.1;Ontology_term=GO:0016868;gbkey=CDS;go_function=intramolecular phosphotransferase activity|0016868||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000222553.1;locus_tag=D5F88_RS10460;product=phospho-sugar mutase;protein_id=WP_000222544.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 7681 7878 . - . ID=gene-D5F88_RS10465;Name=D5F88_RS10465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10465;old_locus_tag=D5F88_10475 NZ_QYTI01000083.1 Protein Homology CDS 7681 7878 . - 0 ID=cds-WP_000746856.1;Parent=gene-D5F88_RS10465;Dbxref=GenBank:WP_000746856.1;Name=WP_000746856.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000746853.1;locus_tag=D5F88_RS10465;product=hypothetical protein;protein_id=WP_000746856.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 7892 9625 . - . ID=gene-D5F88_RS10470;Name=D5F88_RS10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10470;old_locus_tag=D5F88_10480 NZ_QYTI01000083.1 Protein Homology CDS 7892 9625 . - 0 ID=cds-WP_016502900.1;Parent=gene-D5F88_RS10470;Dbxref=GenBank:WP_016502900.1;Name=WP_016502900.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000647639.1;locus_tag=D5F88_RS10470;product=ABC transporter ATP-binding protein;protein_id=WP_016502900.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 9626 11344 . - . ID=gene-D5F88_RS10475;Name=D5F88_RS10475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10475;old_locus_tag=D5F88_10485 NZ_QYTI01000083.1 Protein Homology CDS 9626 11344 . - 0 ID=cds-WP_086163350.1;Parent=gene-D5F88_RS10475;Dbxref=GenBank:WP_086163350.1;Name=WP_086163350.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000826948.1;locus_tag=D5F88_RS10475;product=ABC transporter ATP-binding protein;protein_id=WP_086163350.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 11356 11958 . - . ID=gene-D5F88_RS10480;Name=D5F88_RS10480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10480;old_locus_tag=D5F88_10490 NZ_QYTI01000083.1 Protein Homology CDS 11356 11958 . - 0 ID=cds-WP_000472259.1;Parent=gene-D5F88_RS10480;Dbxref=GenBank:WP_000472259.1;Name=WP_000472259.1;Ontology_term=GO:0016052;gbkey=CDS;go_process=carbohydrate catabolic process|0016052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647126.1;locus_tag=D5F88_RS10480;product=lysozyme family protein;protein_id=WP_000472259.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 11960 12937 . - . ID=gene-D5F88_RS10485;Name=D5F88_RS10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10485;old_locus_tag=D5F88_10495 NZ_QYTI01000083.1 Protein Homology CDS 11960 12937 . - 0 ID=cds-WP_086163351.1;Parent=gene-D5F88_RS10485;Dbxref=GenBank:WP_086163351.1;Name=WP_086163351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645607.1;locus_tag=D5F88_RS10485;product=nucleoid-associated protein;protein_id=WP_086163351.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 12942 14198 . - . ID=gene-D5F88_RS10490;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=D5F88_RS10490;old_locus_tag=D5F88_10500 NZ_QYTI01000083.1 Protein Homology CDS 12942 14198 . - 0 ID=cds-WP_000575546.1;Parent=gene-D5F88_RS10490;Dbxref=GenBank:WP_000575546.1;Name=WP_000575546.1;Ontology_term=GO:0019264,GO:0004372,GO:0008270,GO:0030170,GO:0070905;gbkey=CDS;gene=glyA;go_function=glycine hydroxymethyltransferase activity|0004372||IEA,zinc ion binding|0008270||IEA,pyridoxal phosphate binding|0030170||IEA,serine binding|0070905||IEA;go_process=glycine biosynthetic process from serine|0019264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001863152.1;locus_tag=D5F88_RS10490;product=serine hydroxymethyltransferase;protein_id=WP_000575546.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 14290 14886 . - . ID=gene-D5F88_RS10495;Name=D5F88_RS10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10495;old_locus_tag=D5F88_10505 NZ_QYTI01000083.1 Protein Homology CDS 14290 14886 . - 0 ID=cds-WP_000998734.1;Parent=gene-D5F88_RS10495;Dbxref=GenBank:WP_000998734.1;Name=WP_000998734.1;Ontology_term=GO:0006400,GO:0003725,GO:0061710;gbkey=CDS;go_function=double-stranded RNA binding|0003725||IEA,L-threonylcarbamoyladenylate synthase|0061710||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000998738.1;locus_tag=D5F88_RS10495;product=L-threonylcarbamoyladenylate synthase;protein_id=WP_000998734.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 14879 15709 . - . ID=gene-D5F88_RS10500;Name=prmC;gbkey=Gene;gene=prmC;gene_biotype=protein_coding;locus_tag=D5F88_RS10500;old_locus_tag=D5F88_10510 NZ_QYTI01000083.1 Protein Homology CDS 14879 15709 . - 0 ID=cds-WP_001104941.1;Parent=gene-D5F88_RS10500;Dbxref=GenBank:WP_001104941.1;Name=WP_001104941.1;Ontology_term=GO:0006412,GO:0018364,GO:0008757;gbkey=CDS;gene=prmC;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=translation|0006412||IEA,peptidyl-glutamine methylation|0018364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001104950.1;locus_tag=D5F88_RS10500;product=peptide chain release factor N(5)-glutamine methyltransferase;protein_id=WP_001104941.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 15709 16788 . - . ID=gene-D5F88_RS10505;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=D5F88_RS10505;old_locus_tag=D5F88_10515 NZ_QYTI01000083.1 Protein Homology CDS 15709 16788 . - 0 ID=cds-WP_001028826.1;Parent=gene-D5F88_RS10505;Dbxref=GenBank:WP_001028826.1;Name=WP_001028826.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfA;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002262255.1;locus_tag=D5F88_RS10505;product=peptide chain release factor 1;protein_id=WP_001028826.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 16823 17392 . - . ID=gene-D5F88_RS10510;Name=D5F88_RS10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10510;old_locus_tag=D5F88_10520 NZ_QYTI01000083.1 Protein Homology CDS 16823 17392 . - 0 ID=cds-WP_000068109.1;Parent=gene-D5F88_RS10510;Dbxref=GenBank:WP_000068109.1;Name=WP_000068109.1;Ontology_term=GO:0004797;gbkey=CDS;go_function=thymidine kinase activity|0004797||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000068112.1;locus_tag=D5F88_RS10510;product=thymidine kinase;protein_id=WP_000068109.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 17530 17712 . + . ID=gene-D5F88_RS10515;Name=D5F88_RS10515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10515;old_locus_tag=D5F88_10525 NZ_QYTI01000083.1 Protein Homology CDS 17530 17712 . + 0 ID=cds-WP_001117229.1;Parent=gene-D5F88_RS10515;Dbxref=GenBank:WP_001117229.1;Name=WP_001117229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001117229.1;locus_tag=D5F88_RS10515;product=4-oxalocrotonate tautomerase;protein_id=WP_001117229.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 17861 18799 . + . ID=gene-D5F88_RS10525;Name=D5F88_RS10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10525;old_locus_tag=D5F88_10535 NZ_QYTI01000083.1 Protein Homology CDS 17861 18799 . + 0 ID=cds-WP_016502903.1;Parent=gene-D5F88_RS10525;Dbxref=GenBank:WP_016502903.1;Name=WP_016502903.1;Ontology_term=GO:0017013,GO:0016740,GO:0046872,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transferase activity|0016740||IEA,metal ion binding|0046872||IEA;go_process=protein flavinylation|0017013||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001177180.1;locus_tag=D5F88_RS10525;product=FAD:protein FMN transferase;protein_id=WP_016502903.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 18817 19419 . + . ID=gene-D5F88_RS10530;Name=D5F88_RS10530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10530;old_locus_tag=D5F88_10540 NZ_QYTI01000083.1 Protein Homology CDS 18817 19419 . + 0 ID=cds-WP_000766628.1;Parent=gene-D5F88_RS10530;Dbxref=GenBank:WP_000766628.1;Name=WP_000766628.1;Ontology_term=GO:0008752,GO:0008753,GO:0010181,GO:0016491,GO:0050136,GO:0052873;gbkey=CDS;go_function=FMN reductase [NAD(P)H] activity|0008752||IEA,NADPH dehydrogenase (quinone) activity|0008753||IEA,FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA,NADH dehydrogenase (quinone) (non-electrogenic) activity|0050136||IEA,FMN reductase (NADPH) activity|0052873||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002308468.1;locus_tag=D5F88_RS10530;product=NADPH-dependent FMN reductase;protein_id=WP_000766628.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 19443 20678 . + . ID=gene-D5F88_RS10535;Name=D5F88_RS10535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10535;old_locus_tag=D5F88_10545 NZ_QYTI01000083.1 Protein Homology CDS 19443 20678 . + 0 ID=cds-WP_000673640.1;Parent=gene-D5F88_RS10535;Dbxref=GenBank:WP_000673640.1;Name=WP_000673640.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000673646.1;locus_tag=D5F88_RS10535;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_000673640.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 20777 21565 . + . ID=gene-D5F88_RS10540;Name=D5F88_RS10540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10540;old_locus_tag=D5F88_10550 NZ_QYTI01000083.1 Protein Homology CDS 20777 21565 . + 0 ID=cds-WP_000051852.1;Parent=gene-D5F88_RS10540;Dbxref=GenBank:WP_000051852.1;Name=WP_000051852.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000051854.1;locus_tag=D5F88_RS10540;product=formate/nitrite transporter family protein;protein_id=WP_000051852.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 21664 22938 . - . ID=gene-D5F88_RS10545;Name=D5F88_RS10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10545;old_locus_tag=D5F88_10555 NZ_QYTI01000083.1 Protein Homology CDS 21664 22938 . - 0 ID=cds-WP_017649449.1;Parent=gene-D5F88_RS10545;Dbxref=GenBank:WP_017649449.1;Name=WP_017649449.1;Ontology_term=GO:0015851,GO:0015205,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=nucleobase transmembrane transporter activity|0015205||IEA;go_process=nucleobase transport|0015851||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000671521.1;locus_tag=D5F88_RS10545;product=nucleobase:cation symporter-2 family protein;protein_id=WP_017649449.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 22938 23519 . - . ID=gene-D5F88_RS10550;Name=D5F88_RS10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10550;old_locus_tag=D5F88_10560 NZ_QYTI01000083.1 Protein Homology CDS 22938 23519 . - 0 ID=cds-WP_000770389.1;Parent=gene-D5F88_RS10550;Dbxref=GenBank:WP_000770389.1;Name=WP_000770389.1;Ontology_term=GO:0043101,GO:0046110,GO:0016763;gbkey=CDS;go_function=pentosyltransferase activity|0016763||IEA;go_process=purine-containing compound salvage|0043101||IEA,xanthine metabolic process|0046110||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000770392.1;locus_tag=D5F88_RS10550;product=xanthine phosphoribosyltransferase;protein_id=WP_000770389.1;transl_table=11 NZ_QYTI01000083.1 cmsearch riboswitch 23624 23719 . - . ID=id-NZ_QYTI01000083.1:23624..23719;Dbxref=RFAM:RF00167;Note=purine riboswitch;bound_moiety=guanine and/or adenine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_QYTI01000083.1 RefSeq gene 23775 24758 . - . ID=gene-D5F88_RS10555;Name=guaC;gbkey=Gene;gene=guaC;gene_biotype=protein_coding;locus_tag=D5F88_RS10555;old_locus_tag=D5F88_10565 NZ_QYTI01000083.1 Protein Homology CDS 23775 24758 . - 0 ID=cds-WP_016502905.1;Parent=gene-D5F88_RS10555;Dbxref=GenBank:WP_016502905.1;Name=WP_016502905.1;Ontology_term=GO:0006163,GO:0003920,GO:1902560;gbkey=CDS;gene=guaC;go_component=GMP reductase complex|1902560||IEA;go_function=GMP reductase activity|0003920||IEA;go_process=purine nucleotide metabolic process|0006163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007891361.1;locus_tag=D5F88_RS10555;product=GMP reductase;protein_id=WP_016502905.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 24960 26300 . - . ID=gene-D5F88_RS10560;Name=D5F88_RS10560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10560;old_locus_tag=D5F88_10570 NZ_QYTI01000083.1 Protein Homology CDS 24960 26300 . - 0 ID=cds-WP_016502906.1;Parent=gene-D5F88_RS10560;Dbxref=GenBank:WP_016502906.1;Name=WP_016502906.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480798.1;locus_tag=D5F88_RS10560;product=MFS transporter;protein_id=WP_016502906.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 26592 27263 . + . ID=gene-D5F88_RS10565;Name=D5F88_RS10565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10565;old_locus_tag=D5F88_10575 NZ_QYTI01000083.1 Protein Homology CDS 26592 27263 . + 0 ID=cds-WP_000853096.1;Parent=gene-D5F88_RS10565;Dbxref=GenBank:WP_000853096.1;Name=WP_000853096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000885905.1;locus_tag=D5F88_RS10565;product=hypothetical protein;protein_id=WP_000853096.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 27335 29335 . - . ID=gene-D5F88_RS10570;Name=D5F88_RS10570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10570;old_locus_tag=D5F88_10580 NZ_QYTI01000083.1 Protein Homology CDS 27335 29335 . - 0 ID=cds-WP_086163352.1;Parent=gene-D5F88_RS10570;Dbxref=GenBank:WP_086163352.1;Name=WP_086163352.1;Ontology_term=GO:0015079,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=potassium ion transmembrane transporter activity|0015079||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001164946.1;locus_tag=D5F88_RS10570;product=KUP/HAK/KT family potassium transporter;protein_id=WP_086163352.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 29470 30231 . - . ID=gene-D5F88_RS10575;Name=D5F88_RS10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10575;old_locus_tag=D5F88_10585 NZ_QYTI01000083.1 Protein Homology CDS 29470 30231 . - 0 ID=cds-WP_086163353.1;Parent=gene-D5F88_RS10575;Dbxref=GenBank:WP_086163353.1;Name=WP_086163353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649058.1;locus_tag=D5F88_RS10575;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_086163353.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 30293 31285 . - . ID=gene-D5F88_RS10580;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=D5F88_RS10580;old_locus_tag=D5F88_10590 NZ_QYTI01000083.1 Protein Homology CDS 30293 31285 . - 0 ID=cds-WP_001257096.1;Parent=gene-D5F88_RS10580;Dbxref=GenBank:WP_001257096.1;Name=WP_001257096.1;Ontology_term=GO:0006086,GO:0008959;gbkey=CDS;gene=pta;go_function=phosphate acetyltransferase activity|0008959||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767953.1;locus_tag=D5F88_RS10580;product=phosphate acetyltransferase;protein_id=WP_001257096.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 31311 32195 . - . ID=gene-D5F88_RS10585;Name=D5F88_RS10585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10585;old_locus_tag=D5F88_10595 NZ_QYTI01000083.1 Protein Homology CDS 31311 32195 . - 0 ID=cds-WP_000667471.1;Parent=gene-D5F88_RS10585;Dbxref=GenBank:WP_000667471.1;Name=WP_000667471.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000667470.1;locus_tag=D5F88_RS10585;product=RluA family pseudouridine synthase;protein_id=WP_000667471.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 32192 33028 . - . ID=gene-D5F88_RS10590;Name=D5F88_RS10590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10590;old_locus_tag=D5F88_10600 NZ_QYTI01000083.1 Protein Homology CDS 32192 33028 . - 0 ID=cds-WP_000192910.1;Parent=gene-D5F88_RS10590;Dbxref=GenBank:WP_000192910.1;Name=WP_000192910.1;Ontology_term=GO:0006741,GO:0003951;gbkey=CDS;go_function=NAD+ kinase activity|0003951||IEA;go_process=NADP+ biosynthetic process|0006741||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000192906.1;locus_tag=D5F88_RS10590;product=NAD kinase;protein_id=WP_000192910.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 33003 33674 . - . ID=gene-D5F88_RS10595;Name=D5F88_RS10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10595;old_locus_tag=D5F88_10605 NZ_QYTI01000083.1 Protein Homology CDS 33003 33674 . - 0 ID=cds-WP_000061344.1;Parent=gene-D5F88_RS10595;Dbxref=GenBank:WP_000061344.1;Name=WP_000061344.1;Ontology_term=GO:0015969,GO:0016310,GO:0005524,GO:0008728,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,GTP diphosphokinase activity|0008728||IEA,metal ion binding|0046872||IEA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771989.1;locus_tag=D5F88_RS10595;product=GTP pyrophosphokinase;protein_id=WP_000061344.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 33784 34356 . + . ID=gene-D5F88_RS10600;Name=D5F88_RS10600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10600;old_locus_tag=D5F88_10610 NZ_QYTI01000083.1 Protein Homology CDS 33784 34356 . + 0 ID=cds-WP_000149079.1;Parent=gene-D5F88_RS10600;Dbxref=GenBank:WP_000149079.1;Name=WP_000149079.1;Ontology_term=GO:0046872,GO:0050355;gbkey=CDS;go_function=metal ion binding|0046872||IEA,inorganic triphosphate phosphatase activity|0050355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480803.1;locus_tag=D5F88_RS10600;product=CYTH domain-containing protein;protein_id=WP_000149079.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 34533 35507 . + . ID=gene-D5F88_RS10605;Name=D5F88_RS10605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10605;old_locus_tag=D5F88_10615 NZ_QYTI01000083.1 Protein Homology CDS 34533 35507 . + 0 ID=cds-WP_000840698.1;Parent=gene-D5F88_RS10605;Dbxref=GenBank:WP_000840698.1;Name=WP_000840698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000840703.1;locus_tag=D5F88_RS10605;product=ribose-phosphate diphosphokinase;protein_id=WP_000840698.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 35511 36626 . + . ID=gene-D5F88_RS10610;Name=D5F88_RS10610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10610;old_locus_tag=D5F88_10620 NZ_QYTI01000083.1 Protein Homology CDS 35511 36626 . + 0 ID=cds-WP_000639608.1;Parent=gene-D5F88_RS10610;Dbxref=GenBank:WP_000639608.1;Name=WP_000639608.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000639599.1;locus_tag=D5F88_RS10610;product=cysteine desulfurase family protein;protein_id=WP_000639608.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 36628 36975 . + . ID=gene-D5F88_RS10615;Name=D5F88_RS10615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10615;old_locus_tag=D5F88_10625 NZ_QYTI01000083.1 Protein Homology CDS 36628 36975 . + 0 ID=cds-WP_000863499.1;Parent=gene-D5F88_RS10615;Dbxref=GenBank:WP_000863499.1;Name=WP_000863499.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480804.1;locus_tag=D5F88_RS10615;product=DUF1831 domain-containing protein;protein_id=WP_000863499.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 37130 37768 . + . ID=gene-D5F88_RS10620;Name=D5F88_RS10620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10620;old_locus_tag=D5F88_10630 NZ_QYTI01000083.1 Protein Homology CDS 37130 37768 . + 0 ID=cds-WP_000605175.1;Parent=gene-D5F88_RS10620;Dbxref=GenBank:WP_000605175.1;Name=WP_000605175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771355.1;locus_tag=D5F88_RS10620;product=redox-sensing transcriptional repressor Rex;protein_id=WP_000605175.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 37781 38461 . - . ID=gene-D5F88_RS10625;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=D5F88_RS10625;old_locus_tag=D5F88_10635 NZ_QYTI01000083.1 Protein Homology CDS 37781 38461 . - 0 ID=cds-WP_000274751.1;Parent=gene-D5F88_RS10625;Dbxref=GenBank:WP_000274751.1;Name=WP_000274751.1;gbkey=CDS;gene=radC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000274751.1;locus_tag=D5F88_RS10625;product=RadC family protein;protein_id=WP_000274751.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 38557 39690 . - . ID=gene-D5F88_RS10630;Name=D5F88_RS10630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10630;old_locus_tag=D5F88_10640 NZ_QYTI01000083.1 Protein Homology CDS 38557 39690 . - 0 ID=cds-WP_000667246.1;Parent=gene-D5F88_RS10630;Dbxref=GenBank:WP_000667246.1;Name=WP_000667246.1;Ontology_term=GO:0055085,GO:1905887,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA,autoinducer AI-2 transmembrane transport|1905887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000667240.1;locus_tag=D5F88_RS10630;product=AI-2E family transporter;protein_id=WP_000667246.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 39781 41220 . - . ID=gene-D5F88_RS10635;Name=D5F88_RS10635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10635;old_locus_tag=D5F88_10645 NZ_QYTI01000083.1 Protein Homology CDS 39781 41220 . - 0 ID=cds-WP_180383431.1;Parent=gene-D5F88_RS10635;Dbxref=GenBank:WP_180383431.1;Name=WP_180383431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000989488.1;locus_tag=D5F88_RS10635;product=6-phospho-beta-glucosidase;protein_id=WP_180383431.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 41380 41994 . - . ID=gene-D5F88_RS10640;Name=D5F88_RS10640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10640;old_locus_tag=D5F88_10650 NZ_QYTI01000083.1 Protein Homology CDS 41380 41994 . - 0 ID=cds-WP_016502912.1;Parent=gene-D5F88_RS10640;Dbxref=GenBank:WP_016502912.1;Name=WP_016502912.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000895129.1;locus_tag=D5F88_RS10640;product=SGNH/GDSL hydrolase family protein;protein_id=WP_016502912.1;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 42095 42916 . - . ID=gene-D5F88_RS10645;Name=D5F88_RS10645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10645;old_locus_tag=D5F88_10655 NZ_QYTI01000083.1 Protein Homology CDS 42095 42916 . - 0 ID=cds-WP_016480806.1;Parent=gene-D5F88_RS10645;Dbxref=GenBank:WP_016480806.1;Name=WP_016480806.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000593351.1;locus_tag=D5F88_RS10645;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_016480806.1;transl_table=11 NZ_QYTI01000083.1 RefSeq pseudogene 43099 43278 . - . ID=gene-D5F88_RS11925;Name=D5F88_RS11925;end_range=43278,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11925;old_locus_tag=D5F88_10660;partial=true;pseudo=true NZ_QYTI01000083.1 Protein Homology CDS 43099 43278 . - 0 ID=cds-D5F88_RS11925;Parent=gene-D5F88_RS11925;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=43278,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002894089.1;locus_tag=D5F88_RS11925;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_QYTI01000083.1 RefSeq gene 43540 44469 . + . ID=gene-D5F88_RS10655;Name=D5F88_RS10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10655;old_locus_tag=D5F88_10665 NZ_QYTI01000083.1 Protein Homology CDS 43540 44469 . + 0 ID=cds-WP_016480807.1;Parent=gene-D5F88_RS10655;Dbxref=GenBank:WP_016480807.1;Name=WP_016480807.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001086432.1;locus_tag=D5F88_RS10655;product=helix-turn-helix transcriptional regulator;protein_id=WP_016480807.1;transl_table=11 ##sequence-region NZ_QYTI01000084.1 1 22282 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000084.1 RefSeq region 1 22282 . + . ID=NZ_QYTI01000084.1:1..22282;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000084.1 RefSeq gene 1 211 . - . ID=gene-D5F88_RS10660;Name=D5F88_RS10660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10660;old_locus_tag=D5F88_10670;partial=true;start_range=.,1 NZ_QYTI01000084.1 Protein Homology CDS 1 211 . - 0 ID=cds-WP_134950454.1;Parent=gene-D5F88_RS10660;Dbxref=GenBank:WP_134950454.1;Name=WP_134950454.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS10660;partial=true;product=transposase;protein_id=WP_134950454.1;start_range=.,1;transl_table=11 NZ_QYTI01000084.1 RefSeq pseudogene 292 1098 . + . ID=gene-D5F88_RS10665;Name=D5F88_RS10665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS10665;old_locus_tag=D5F88_10675;partial=true;pseudo=true;start_range=.,292 NZ_QYTI01000084.1 Protein Homology CDS 292 1098 . + 0 ID=cds-D5F88_RS10665;Parent=gene-D5F88_RS10665;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000160532.1;locus_tag=D5F88_RS10665;partial=true;product=IS30-like element ISSag9 family transposase;pseudo=true;start_range=.,292;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 1434 2816 . - . ID=gene-D5F88_RS10670;Name=D5F88_RS10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10670;old_locus_tag=D5F88_10680 NZ_QYTI01000084.1 Protein Homology CDS 1434 2816 . - 0 ID=cds-WP_000958259.1;Parent=gene-D5F88_RS10670;Dbxref=GenBank:WP_000958259.1;Name=WP_000958259.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000958256.1;locus_tag=D5F88_RS10670;product=MFS transporter;protein_id=WP_000958259.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 2824 4038 . - . ID=gene-D5F88_RS10675;Name=D5F88_RS10675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10675;old_locus_tag=D5F88_10685 NZ_QYTI01000084.1 Protein Homology CDS 2824 4038 . - 0 ID=cds-WP_001262294.1;Parent=gene-D5F88_RS10675;Dbxref=GenBank:WP_001262294.1;Name=WP_001262294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001262291.1;locus_tag=D5F88_RS10675;product=M20 family metallopeptidase;protein_id=WP_001262294.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 4297 5202 . + . ID=gene-D5F88_RS10680;Name=D5F88_RS10680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10680;old_locus_tag=D5F88_10690 NZ_QYTI01000084.1 Protein Homology CDS 4297 5202 . + 0 ID=cds-WP_180383436.1;Parent=gene-D5F88_RS10680;Dbxref=GenBank:WP_180383436.1;Name=WP_180383436.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768245.1;locus_tag=D5F88_RS10680;product=LysR family transcriptional regulator;protein_id=WP_180383436.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 5263 5616 . + . ID=gene-D5F88_RS10685;Name=D5F88_RS10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10685;old_locus_tag=D5F88_10695 NZ_QYTI01000084.1 Protein Homology CDS 5263 5616 . + 0 ID=cds-WP_000639447.1;Parent=gene-D5F88_RS10685;Dbxref=GenBank:WP_000639447.1;Name=WP_000639447.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000639445.1;locus_tag=D5F88_RS10685;product=DUF3397 domain-containing protein;protein_id=WP_000639447.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 5645 7360 . - . ID=gene-D5F88_RS10690;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=D5F88_RS10690;old_locus_tag=D5F88_10700 NZ_QYTI01000084.1 Protein Homology CDS 5645 7360 . - 0 ID=cds-WP_086163435.1;Parent=gene-D5F88_RS10690;Dbxref=GenBank:WP_086163435.1;Name=WP_086163435.1;Ontology_term=GO:0008153,GO:0009396,GO:0046820;gbkey=CDS;gene=pabB;go_function=4-amino-4-deoxychorismate synthase activity|0046820||IEA;go_process=4-aminobenzoate biosynthetic process|0008153||IEA,folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647893.1;locus_tag=D5F88_RS10690;product=aminodeoxychorismate synthase component I;protein_id=WP_086163435.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 7442 9892 . - . ID=gene-D5F88_RS10695;Name=D5F88_RS10695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10695;old_locus_tag=D5F88_10705 NZ_QYTI01000084.1 Protein Homology CDS 7442 9892 . - 0 ID=cds-WP_000231568.1;Parent=gene-D5F88_RS10695;Dbxref=GenBank:WP_000231568.1;Name=WP_000231568.1;Ontology_term=GO:0007059,GO:0051301,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=chromosome segregation|0007059||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000231573.1;locus_tag=D5F88_RS10695;product=DNA translocase FtsK;protein_id=WP_000231568.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 10058 10861 . + . ID=gene-D5F88_RS10700;Name=D5F88_RS10700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10700;old_locus_tag=D5F88_10710 NZ_QYTI01000084.1 Protein Homology CDS 10058 10861 . + 0 ID=cds-WP_124749139.1;Parent=gene-D5F88_RS10700;Dbxref=GenBank:WP_124749139.1;Name=WP_124749139.1;Ontology_term=GO:0000413,GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;go_process=protein peptidyl-prolyl isomerization|0000413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000719928.1;locus_tag=D5F88_RS10700;product=peptidylprolyl isomerase;protein_id=WP_124749139.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 10913 11746 . - . ID=gene-D5F88_RS10705;Name=D5F88_RS10705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10705;old_locus_tag=D5F88_10715 NZ_QYTI01000084.1 Protein Homology CDS 10913 11746 . - 0 ID=cds-WP_000494350.1;Parent=gene-D5F88_RS10705;Dbxref=GenBank:WP_000494350.1;Name=WP_000494350.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000494351.1;locus_tag=D5F88_RS10705;product=metal ABC transporter permease;protein_id=WP_000494350.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 11748 12464 . - . ID=gene-D5F88_RS10710;Name=D5F88_RS10710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10710;old_locus_tag=D5F88_10720 NZ_QYTI01000084.1 Protein Homology CDS 11748 12464 . - 0 ID=cds-WP_000587174.1;Parent=gene-D5F88_RS10710;Dbxref=GenBank:WP_000587174.1;Name=WP_000587174.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481069.1;locus_tag=D5F88_RS10710;product=metal ABC transporter ATP-binding protein;protein_id=WP_000587174.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 12635 13561 . - . ID=gene-D5F88_RS10715;Name=D5F88_RS10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10715;old_locus_tag=D5F88_10725 NZ_QYTI01000084.1 Protein Homology CDS 12635 13561 . - 0 ID=cds-WP_000759089.1;Parent=gene-D5F88_RS10715;Dbxref=GenBank:WP_000759089.1;Name=WP_000759089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767839.1;locus_tag=D5F88_RS10715;product=metal ABC transporter substrate-binding protein;protein_id=WP_000759089.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 13728 14375 . + . ID=gene-D5F88_RS10720;Name=D5F88_RS10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10720;old_locus_tag=D5F88_10730 NZ_QYTI01000084.1 Protein Homology CDS 13728 14375 . + 0 ID=cds-WP_000188490.1;Parent=gene-D5F88_RS10720;Dbxref=GenBank:WP_000188490.1;Name=WP_000188490.1;Ontology_term=GO:0003677,GO:0003700,GO:0046914,GO:0046983;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transition metal ion binding|0046914||IEA,protein dimerization activity|0046983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000188484.1;locus_tag=D5F88_RS10720;product=metal-dependent transcriptional regulator;protein_id=WP_000188490.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 14415 15104 . - . ID=gene-D5F88_RS10725;Name=D5F88_RS10725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10725;old_locus_tag=D5F88_10735 NZ_QYTI01000084.1 Protein Homology CDS 14415 15104 . - 0 ID=cds-WP_000689759.1;Parent=gene-D5F88_RS10725;Dbxref=GenBank:WP_000689759.1;Name=WP_000689759.1;Ontology_term=GO:0009116,GO:0009164,GO:0019509,GO:0008782,GO:0008930;gbkey=CDS;go_function=adenosylhomocysteine nucleosidase activity|0008782||IEA,methylthioadenosine nucleosidase activity|0008930||IEA;go_process=nucleoside metabolic process|0009116||IEA,nucleoside catabolic process|0009164||IEA,L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000689756.1;locus_tag=D5F88_RS10725;product=5'-methylthioadenosine/adenosylhomocysteine nucleosidase;protein_id=WP_000689759.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 15114 15383 . - . ID=gene-D5F88_RS10730;Name=macP;gbkey=Gene;gene=macP;gene_biotype=protein_coding;locus_tag=D5F88_RS10730;old_locus_tag=D5F88_10740 NZ_QYTI01000084.1 Protein Homology CDS 15114 15383 . - 0 ID=cds-WP_000517852.1;Parent=gene-D5F88_RS10730;Dbxref=GenBank:WP_000517852.1;Name=WP_000517852.1;gbkey=CDS;gene=macP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000517852.1;locus_tag=D5F88_RS10730;product=cell wall synthase accessory phosphoprotein MacP;protein_id=WP_000517852.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 15383 15937 . - . ID=gene-D5F88_RS10735;Name=D5F88_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10735;old_locus_tag=D5F88_10745 NZ_QYTI01000084.1 Protein Homology CDS 15383 15937 . - 0 ID=cds-WP_000344991.1;Parent=gene-D5F88_RS10735;Dbxref=GenBank:WP_000344991.1;Name=WP_000344991.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632172.1;locus_tag=D5F88_RS10735;product=NUDIX domain-containing protein;protein_id=WP_000344991.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 15958 17337 . - . ID=gene-D5F88_RS10740;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=D5F88_RS10740;old_locus_tag=D5F88_10750 NZ_QYTI01000084.1 Protein Homology CDS 15958 17337 . - 0 ID=cds-WP_000073778.1;Parent=gene-D5F88_RS10740;Dbxref=GenBank:WP_000073778.1;Name=WP_000073778.1;Ontology_term=GO:0006048,GO:0009252,GO:0000287,GO:0003977,GO:0019134;gbkey=CDS;gene=glmU;go_function=magnesium ion binding|0000287||IEA,UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA,glucosamine-1-phosphate N-acetyltransferase activity|0019134||IEA;go_process=UDP-N-acetylglucosamine biosynthetic process|0006048||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002899862.1;locus_tag=D5F88_RS10740;product=bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;protein_id=WP_000073778.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 17581 17994 . - . ID=gene-D5F88_RS10750;Name=D5F88_RS10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10750;old_locus_tag=D5F88_10760 NZ_QYTI01000084.1 Protein Homology CDS 17581 17994 . - 0 ID=cds-WP_016481074.1;Parent=gene-D5F88_RS10750;Dbxref=GenBank:WP_016481074.1;Name=WP_016481074.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000237565.1;locus_tag=D5F88_RS10750;product=VOC family protein;protein_id=WP_016481074.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 18007 18384 . - . ID=gene-D5F88_RS10755;Name=D5F88_RS10755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10755;old_locus_tag=D5F88_10765 NZ_QYTI01000084.1 Protein Homology CDS 18007 18384 . - 0 ID=cds-WP_086163436.1;Parent=gene-D5F88_RS10755;Dbxref=GenBank:WP_086163436.1;Name=WP_086163436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000625774.1;locus_tag=D5F88_RS10755;product=VOC family protein;protein_id=WP_086163436.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 18473 19429 . - . ID=gene-D5F88_RS10760;Name=D5F88_RS10760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10760;old_locus_tag=D5F88_10770 NZ_QYTI01000084.1 Protein Homology CDS 18473 19429 . - 0 ID=cds-WP_086163437.1;Parent=gene-D5F88_RS10760;Dbxref=GenBank:WP_086163437.1;Name=WP_086163437.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481075.1;locus_tag=D5F88_RS10760;product=Gfo/Idh/MocA family protein;protein_id=WP_086163437.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 19426 19878 . - . ID=gene-D5F88_RS10765;Name=D5F88_RS10765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10765;old_locus_tag=D5F88_10775 NZ_QYTI01000084.1 Protein Homology CDS 19426 19878 . - 0 ID=cds-WP_016503083.1;Parent=gene-D5F88_RS10765;Dbxref=GenBank:WP_016503083.1;Name=WP_016503083.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000647214.1;locus_tag=D5F88_RS10765;product=ASCH domain-containing protein;protein_id=WP_016503083.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 19875 20120 . - . ID=gene-D5F88_RS10770;Name=D5F88_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10770;old_locus_tag=D5F88_10780 NZ_QYTI01000084.1 Protein Homology CDS 19875 20120 . - 0 ID=cds-WP_001233823.1;Parent=gene-D5F88_RS10770;Dbxref=GenBank:WP_001233823.1;Name=WP_001233823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001233822.1;locus_tag=D5F88_RS10770;product=DUF3977 family protein;protein_id=WP_001233823.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 20117 20815 . - . ID=gene-D5F88_RS10775;Name=D5F88_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10775;old_locus_tag=D5F88_10785 NZ_QYTI01000084.1 Protein Homology CDS 20117 20815 . - 0 ID=cds-WP_016503084.1;Parent=gene-D5F88_RS10775;Dbxref=GenBank:WP_016503084.1;Name=WP_016503084.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002990841.1;locus_tag=D5F88_RS10775;product=3-oxoacyl-ACP reductase;protein_id=WP_016503084.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 20808 21044 . - . ID=gene-D5F88_RS10780;Name=D5F88_RS10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10780;old_locus_tag=D5F88_10790 NZ_QYTI01000084.1 Protein Homology CDS 20808 21044 . - 0 ID=cds-WP_000141918.1;Parent=gene-D5F88_RS10780;Dbxref=GenBank:WP_000141918.1;Name=WP_000141918.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018367459.1;locus_tag=D5F88_RS10780;product=DUF2829 domain-containing protein;protein_id=WP_000141918.1;transl_table=11 NZ_QYTI01000084.1 RefSeq gene 21389 21877 . - . ID=gene-D5F88_RS10785;Name=D5F88_RS10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10785;old_locus_tag=D5F88_10795 NZ_QYTI01000084.1 Protein Homology CDS 21389 21877 . - 0 ID=cds-WP_180383578.1;Parent=gene-D5F88_RS10785;Dbxref=GenBank:WP_180383578.1;Name=WP_180383578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000388668.1;locus_tag=D5F88_RS10785;product=prolyl-tRNA synthetase associated domain-containing protein;protein_id=WP_180383578.1;transl_table=11 NZ_QYTI01000084.1 RefSeq pseudogene 22054 22260 . - . ID=gene-D5F88_RS10790;Name=D5F88_RS10790;end_range=22260,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS10790;old_locus_tag=D5F88_10800;partial=true;pseudo=true NZ_QYTI01000084.1 Protein Homology CDS 22054 22260 . - 0 ID=cds-D5F88_RS10790;Parent=gene-D5F88_RS10790;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0008080,GO:0016746;end_range=22260,.;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648252.1;locus_tag=D5F88_RS10790;partial=true;product=GNAT family N-acetyltransferase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000085.1 1 760 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000085.1 RefSeq region 1 760 . + . ID=NZ_QYTI01000085.1:1..760;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000085.1 RefSeq gene 1 760 . + . ID=gene-D5F88_RS11735;Name=D5F88_RS11735;end_range=760,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11735;partial=true;start_range=.,1 NZ_QYTI01000085.1 GeneMarkS-2+ CDS 1 760 . + 0 ID=cds-WP_446546119.1;Parent=gene-D5F88_RS11735;Dbxref=GenBank:WP_446546119.1;Name=WP_446546119.1;end_range=760,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS11735;partial=true;product=hypothetical protein;protein_id=WP_446546119.1;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000086.1 1 27802 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000086.1 RefSeq region 1 27802 . + . ID=NZ_QYTI01000086.1:1..27802;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000086.1 RefSeq gene 1 314 . + . ID=gene-D5F88_RS10800;Name=D5F88_RS10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10800;old_locus_tag=D5F88_10810;partial=true;start_range=.,1 NZ_QYTI01000086.1 Protein Homology CDS 1 314 . + 2 ID=cds-WP_142997449.1;Parent=gene-D5F88_RS10800;Dbxref=GenBank:WP_142997449.1;Name=WP_142997449.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001086432.1;locus_tag=D5F88_RS10800;partial=true;product=helix-turn-helix domain-containing protein;protein_id=WP_142997449.1;start_range=.,1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 371 1903 . - . ID=gene-D5F88_RS10805;Name=D5F88_RS10805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10805;old_locus_tag=D5F88_10815 NZ_QYTI01000086.1 Protein Homology CDS 371 1903 . - 0 ID=cds-WP_016480808.1;Parent=gene-D5F88_RS10805;Dbxref=GenBank:WP_016480808.1;Name=WP_016480808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646779.1;locus_tag=D5F88_RS10805;product=ClC family H(+)/Cl(-) exchange transporter;protein_id=WP_016480808.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 2012 3085 . - . ID=gene-D5F88_RS10810;Name=D5F88_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10810;old_locus_tag=D5F88_10820 NZ_QYTI01000086.1 Protein Homology CDS 2012 3085 . - 0 ID=cds-WP_016480809.1;Parent=gene-D5F88_RS10810;Dbxref=GenBank:WP_016480809.1;Name=WP_016480809.1;Ontology_term=GO:0015846,GO:0019808,GO:0042626,GO:0140359,GO:0042597,GO:0055052;gbkey=CDS;go_component=periplasmic space|0042597||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=polyamine binding|0019808||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632028.1;locus_tag=D5F88_RS10810;product=ABC transporter substrate-binding protein;protein_id=WP_016480809.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 3078 3854 . - . ID=gene-D5F88_RS10815;Name=D5F88_RS10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10815;old_locus_tag=D5F88_10825 NZ_QYTI01000086.1 Protein Homology CDS 3078 3854 . - 0 ID=cds-WP_000712712.1;Parent=gene-D5F88_RS10815;Dbxref=GenBank:WP_000712712.1;Name=WP_000712712.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000712704.1;locus_tag=D5F88_RS10815;product=ABC transporter permease;protein_id=WP_000712712.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 3851 4645 . - . ID=gene-D5F88_RS10820;Name=D5F88_RS10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10820;old_locus_tag=D5F88_10830 NZ_QYTI01000086.1 Protein Homology CDS 3851 4645 . - 0 ID=cds-WP_000753812.1;Parent=gene-D5F88_RS10820;Dbxref=GenBank:WP_000753812.1;Name=WP_000753812.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632030.1;locus_tag=D5F88_RS10820;product=ABC transporter permease;protein_id=WP_000753812.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 4629 5783 . - . ID=gene-D5F88_RS10825;Name=D5F88_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10825;old_locus_tag=D5F88_10835 NZ_QYTI01000086.1 Protein Homology CDS 4629 5783 . - 0 ID=cds-WP_000184098.1;Parent=gene-D5F88_RS10825;Dbxref=GenBank:WP_000184098.1;Name=WP_000184098.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011184488.1;locus_tag=D5F88_RS10825;product=ABC transporter ATP-binding protein;protein_id=WP_000184098.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 5832 6734 . - . ID=gene-D5F88_RS10830;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=D5F88_RS10830;old_locus_tag=D5F88_10840 NZ_QYTI01000086.1 Protein Homology CDS 5832 6734 . - 0 ID=cds-WP_000598027.1;Parent=gene-D5F88_RS10830;Dbxref=GenBank:WP_000598027.1;Name=WP_000598027.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650088.1;locus_tag=D5F88_RS10830;product=UDP-N-acetylmuramate dehydrogenase;protein_id=WP_000598027.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 6878 7366 . - . ID=gene-D5F88_RS10835;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=D5F88_RS10835;old_locus_tag=D5F88_10845 NZ_QYTI01000086.1 Protein Homology CDS 6878 7366 . - 0 ID=cds-WP_000214498.1;Parent=gene-D5F88_RS10835;Dbxref=GenBank:WP_000214498.1;Name=WP_000214498.1;Ontology_term=GO:0009396,GO:0003848;gbkey=CDS;gene=folK;go_function=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|0003848||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000214503.1;locus_tag=D5F88_RS10835;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_000214498.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 7363 7725 . - . ID=gene-D5F88_RS10840;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=D5F88_RS10840;old_locus_tag=D5F88_10850 NZ_QYTI01000086.1 Protein Homology CDS 7363 7725 . - 0 ID=cds-WP_000358071.1;Parent=gene-D5F88_RS10840;Dbxref=GenBank:WP_000358071.1;Name=WP_000358071.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folB;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000358071.1;locus_tag=D5F88_RS10840;product=dihydroneopterin aldolase;protein_id=WP_000358071.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 7727 8530 . - . ID=gene-D5F88_RS10845;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=D5F88_RS10845;old_locus_tag=D5F88_10855 NZ_QYTI01000086.1 Protein Homology CDS 7727 8530 . - 0 ID=cds-WP_000690157.1;Parent=gene-D5F88_RS10845;Dbxref=GenBank:WP_000690157.1;Name=WP_000690157.1;Ontology_term=GO:0009396,GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632031.1;locus_tag=D5F88_RS10845;product=dihydropteroate synthase;protein_id=WP_000690157.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 8534 9097 . - . ID=gene-D5F88_RS10850;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=D5F88_RS10850;old_locus_tag=D5F88_10860 NZ_QYTI01000086.1 Protein Homology CDS 8534 9097 . - 0 ID=cds-WP_001133587.1;Parent=gene-D5F88_RS10850;Dbxref=GenBank:WP_001133587.1;Name=WP_001133587.1;Ontology_term=GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001133588.1;locus_tag=D5F88_RS10850;product=GTP cyclohydrolase I FolE;protein_id=WP_001133587.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 9116 10378 . - . ID=gene-D5F88_RS10855;Name=D5F88_RS10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10855;old_locus_tag=D5F88_10865 NZ_QYTI01000086.1 Protein Homology CDS 9116 10378 . - 0 ID=cds-WP_000222112.1;Parent=gene-D5F88_RS10855;Dbxref=GenBank:WP_000222112.1;Name=WP_000222112.1;Ontology_term=GO:0006730,GO:0004326,GO:0005524,GO:0008841,GO:0046872;gbkey=CDS;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,dihydrofolate synthase activity|0008841||IEA,metal ion binding|0046872||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000222122.1;locus_tag=D5F88_RS10855;product=bifunctional folylpolyglutamate synthase/dihydrofolate synthase;protein_id=WP_000222112.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 10380 11267 . - . ID=gene-D5F88_RS10860;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=D5F88_RS10860;old_locus_tag=D5F88_10870 NZ_QYTI01000086.1 Protein Homology CDS 10380 11267 . - 0 ID=cds-WP_016502914.1;Parent=gene-D5F88_RS10860;Dbxref=GenBank:WP_016502914.1;Name=WP_016502914.1;Ontology_term=GO:0006810,GO:0005215,GO:0005886;gbkey=CDS;gene=rarD;go_component=plasma membrane|0005886||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767746.1;locus_tag=D5F88_RS10860;product=EamA family transporter RarD;protein_id=WP_016502914.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 11254 12120 . - . ID=gene-D5F88_RS10865;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;locus_tag=D5F88_RS10865;old_locus_tag=D5F88_10875 NZ_QYTI01000086.1 Protein Homology CDS 11254 12120 . - 0 ID=cds-WP_001220328.1;Parent=gene-D5F88_RS10865;Dbxref=GenBank:WP_001220328.1;Name=WP_001220328.1;Ontology_term=GO:0009088,GO:0004413,GO:0005524;gbkey=CDS;gene=thrB;go_function=homoserine kinase activity|0004413||IEA,ATP binding|0005524||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017767626.1;locus_tag=D5F88_RS10865;product=homoserine kinase;protein_id=WP_001220328.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 12122 13405 . - . ID=gene-D5F88_RS10870;Name=D5F88_RS10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10870;old_locus_tag=D5F88_10880 NZ_QYTI01000086.1 Protein Homology CDS 12122 13405 . - 0 ID=cds-WP_086163354.1;Parent=gene-D5F88_RS10870;Dbxref=GenBank:WP_086163354.1;Name=WP_086163354.1;Ontology_term=GO:0006520,GO:0004412;gbkey=CDS;go_function=homoserine dehydrogenase activity|0004412||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480813.1;locus_tag=D5F88_RS10870;product=homoserine dehydrogenase;protein_id=WP_086163354.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 13582 14469 . + . ID=gene-D5F88_RS10875;Name=D5F88_RS10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10875;old_locus_tag=D5F88_10885 NZ_QYTI01000086.1 Protein Homology CDS 13582 14469 . + 0 ID=cds-WP_000951500.1;Parent=gene-D5F88_RS10875;Dbxref=GenBank:WP_000951500.1;Name=WP_000951500.1;Ontology_term=GO:0005975,GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017645955.1;locus_tag=D5F88_RS10875;product=polysaccharide deacetylase family protein;protein_id=WP_000951500.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 14492 16039 . - . ID=gene-D5F88_RS10880;Name=D5F88_RS10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10880;old_locus_tag=D5F88_10890 NZ_QYTI01000086.1 Protein Homology CDS 14492 16039 . - 0 ID=cds-WP_016502917.1;Parent=gene-D5F88_RS10880;Dbxref=GenBank:WP_016502917.1;Name=WP_016502917.1;Ontology_term=GO:0071705,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000037479.1;locus_tag=D5F88_RS10880;product=BCCT family transporter;protein_id=WP_016502917.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 16182 17558 . - . ID=gene-D5F88_RS10890;Name=D5F88_RS10890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10890;old_locus_tag=D5F88_10900 NZ_QYTI01000086.1 Protein Homology CDS 16182 17558 . - 0 ID=cds-WP_086163355.1;Parent=gene-D5F88_RS10890;Dbxref=GenBank:WP_086163355.1;Name=WP_086163355.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480816.1;locus_tag=D5F88_RS10890;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_086163355.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 17632 18639 . - . ID=gene-D5F88_RS10895;Name=D5F88_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10895;old_locus_tag=D5F88_10905 NZ_QYTI01000086.1 Protein Homology CDS 17632 18639 . - 0 ID=cds-WP_086163356.1;Parent=gene-D5F88_RS10895;Dbxref=GenBank:WP_086163356.1;Name=WP_086163356.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000897649.1;locus_tag=D5F88_RS10895;product=YeiH family protein;protein_id=WP_086163356.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 18747 19433 . - . ID=gene-D5F88_RS10900;Name=D5F88_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10900;old_locus_tag=D5F88_10910 NZ_QYTI01000086.1 Protein Homology CDS 18747 19433 . - 0 ID=cds-WP_124773374.1;Parent=gene-D5F88_RS10900;Dbxref=GenBank:WP_124773374.1;Name=WP_124773374.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000714057.1;locus_tag=D5F88_RS10900;product=hypothetical protein;protein_id=WP_124773374.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 19912 21195 . + . ID=gene-D5F88_RS10905;Name=D5F88_RS10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10905;old_locus_tag=D5F88_10915 NZ_QYTI01000086.1 Protein Homology CDS 19912 21195 . + 0 ID=cds-WP_180383576.1;Parent=gene-D5F88_RS10905;Dbxref=GenBank:WP_180383576.1;Name=WP_180383576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017644904.1;locus_tag=D5F88_RS10905;product=kinase;protein_id=WP_180383576.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 21350 21589 . + . ID=gene-D5F88_RS10910;Name=D5F88_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10910;old_locus_tag=D5F88_10920 NZ_QYTI01000086.1 Protein Homology CDS 21350 21589 . + 0 ID=cds-WP_001931014.1;Parent=gene-D5F88_RS10910;Dbxref=GenBank:WP_001931014.1;Name=WP_001931014.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001869992.1;locus_tag=D5F88_RS10910;product=helix-turn-helix transcriptional regulator;protein_id=WP_001931014.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 21689 22222 . + . ID=gene-D5F88_RS10915;Name=D5F88_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10915;old_locus_tag=D5F88_10925 NZ_QYTI01000086.1 Protein Homology CDS 21689 22222 . + 0 ID=cds-WP_086163360.1;Parent=gene-D5F88_RS10915;Dbxref=GenBank:WP_086163360.1;Name=WP_086163360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768380.1;locus_tag=D5F88_RS10915;product=DUF3278 domain-containing protein;protein_id=WP_086163360.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 22298 22792 . - . ID=gene-D5F88_RS10920;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=D5F88_RS10920;old_locus_tag=D5F88_10930 NZ_QYTI01000086.1 Protein Homology CDS 22298 22792 . - 0 ID=cds-WP_000206525.1;Parent=gene-D5F88_RS10920;Dbxref=GenBank:WP_000206525.1;Name=WP_000206525.1;Ontology_term=GO:0008379,GO:0016684;gbkey=CDS;gene=tpx;go_function=thioredoxin peroxidase activity|0008379||IEA,oxidoreductase activity%2C acting on peroxide as acceptor|0016684||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000206548.1;locus_tag=D5F88_RS10920;product=thiol peroxidase;protein_id=WP_000206525.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 22865 23524 . - . ID=gene-D5F88_RS10925;Name=D5F88_RS10925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10925;old_locus_tag=D5F88_10935 NZ_QYTI01000086.1 Protein Homology CDS 22865 23524 . - 0 ID=cds-WP_086163361.1;Parent=gene-D5F88_RS10925;Dbxref=GenBank:WP_086163361.1;Name=WP_086163361.1;Ontology_term=GO:0006307;gbkey=CDS;go_process=DNA alkylation repair|0006307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000362921.1;locus_tag=D5F88_RS10925;product=DNA alkylation repair protein;protein_id=WP_086163361.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 23524 24288 . - . ID=gene-D5F88_RS10930;Name=D5F88_RS10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10930;old_locus_tag=D5F88_10940 NZ_QYTI01000086.1 Protein Homology CDS 23524 24288 . - 0 ID=cds-WP_086163362.1;Parent=gene-D5F88_RS10930;Dbxref=GenBank:WP_086163362.1;Name=WP_086163362.1;Ontology_term=GO:0008152,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000348145.1;locus_tag=D5F88_RS10930;product=HAD-IIB family hydrolase;protein_id=WP_086163362.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 24293 24934 . - . ID=gene-D5F88_RS10935;Name=D5F88_RS10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10935;old_locus_tag=D5F88_10945 NZ_QYTI01000086.1 Protein Homology CDS 24293 24934 . - 0 ID=cds-WP_086163363.1;Parent=gene-D5F88_RS10935;Dbxref=GenBank:WP_086163363.1;Name=WP_086163363.1;Ontology_term=GO:0006813,GO:0008324;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000253259.1;locus_tag=D5F88_RS10935;product=TrkA C-terminal domain-containing protein;protein_id=WP_086163363.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 25098 25649 . - . ID=gene-D5F88_RS10940;Name=D5F88_RS10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10940;old_locus_tag=D5F88_10950 NZ_QYTI01000086.1 Protein Homology CDS 25098 25649 . - 0 ID=cds-WP_000431296.1;Parent=gene-D5F88_RS10940;Dbxref=GenBank:WP_000431296.1;Name=WP_000431296.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649823.1;locus_tag=D5F88_RS10940;product=Asp23/Gls24 family envelope stress response protein;protein_id=WP_000431296.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 25671 25868 . - . ID=gene-D5F88_RS10945;Name=D5F88_RS10945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10945;old_locus_tag=D5F88_10955 NZ_QYTI01000086.1 Protein Homology CDS 25671 25868 . - 0 ID=cds-WP_001288036.1;Parent=gene-D5F88_RS10945;Dbxref=GenBank:WP_001288036.1;Name=WP_001288036.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001288036.1;locus_tag=D5F88_RS10945;product=CsbD family protein;protein_id=WP_001288036.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 25915 26457 . - . ID=gene-D5F88_RS10950;Name=D5F88_RS10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10950;old_locus_tag=D5F88_10960 NZ_QYTI01000086.1 Protein Homology CDS 25915 26457 . - 0 ID=cds-WP_086163364.1;Parent=gene-D5F88_RS10950;Dbxref=GenBank:WP_086163364.1;Name=WP_086163364.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632041.1;locus_tag=D5F88_RS10950;product=Asp23/Gls24 family envelope stress response protein;protein_id=WP_086163364.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 26513 26707 . - . ID=gene-D5F88_RS10955;Name=D5F88_RS10955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10955;old_locus_tag=D5F88_10965 NZ_QYTI01000086.1 Protein Homology CDS 26513 26707 . - 0 ID=cds-WP_001288927.1;Parent=gene-D5F88_RS10955;Dbxref=GenBank:WP_001288927.1;Name=WP_001288927.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001288926.1;locus_tag=D5F88_RS10955;product=DUF2273 domain-containing protein;protein_id=WP_001288927.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 26717 27298 . - . ID=gene-D5F88_RS10960;Name=amaP;gbkey=Gene;gene=amaP;gene_biotype=protein_coding;locus_tag=D5F88_RS10960;old_locus_tag=D5F88_10970 NZ_QYTI01000086.1 Protein Homology CDS 26717 27298 . - 0 ID=cds-WP_086163365.1;Parent=gene-D5F88_RS10960;Dbxref=GenBank:WP_086163365.1;Name=WP_086163365.1;gbkey=CDS;gene=amaP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285291.1;locus_tag=D5F88_RS10960;product=alkaline shock response membrane anchor protein AmaP;protein_id=WP_086163365.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 27313 27561 . - . ID=gene-D5F88_RS10965;Name=D5F88_RS10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10965;old_locus_tag=D5F88_10975 NZ_QYTI01000086.1 Protein Homology CDS 27313 27561 . - 0 ID=cds-WP_000053321.1-2;Parent=gene-D5F88_RS10965;Dbxref=GenBank:WP_000053321.1;Name=WP_000053321.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000523011.1;locus_tag=D5F88_RS10965;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000053321.1;transl_table=11 NZ_QYTI01000086.1 RefSeq gene 27609 27802 . - . ID=gene-D5F88_RS10970;Name=D5F88_RS10970;end_range=27802,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10970;old_locus_tag=D5F88_10980;partial=true NZ_QYTI01000086.1 Protein Homology CDS 27609 27802 . - 2 ID=cds-WP_142997450.1;Parent=gene-D5F88_RS10970;Dbxref=GenBank:WP_142997450.1;Name=WP_142997450.1;Ontology_term=GO:0016020;end_range=27802,.;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000523009.1;locus_tag=D5F88_RS10970;partial=true;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_142997450.1;transl_table=11 ##sequence-region NZ_QYTI01000087.1 1 12172 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000087.1 RefSeq region 1 12172 . + . ID=NZ_QYTI01000087.1:1..12172;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000087.1 RefSeq gene 1 141 . + . ID=gene-D5F88_RS10975;Name=D5F88_RS10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10975;old_locus_tag=D5F88_10985;partial=true;start_range=.,1 NZ_QYTI01000087.1 Protein Homology CDS 1 141 . + 0 ID=cds-WP_124773376.1;Parent=gene-D5F88_RS10975;Dbxref=GenBank:WP_124773376.1;Name=WP_124773376.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000763909.1;locus_tag=D5F88_RS10975;partial=true;product=nucleotide modification associated domain-containing protein;protein_id=WP_124773376.1;start_range=.,1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 141 506 . + . ID=gene-D5F88_RS10980;Name=D5F88_RS10980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10980;old_locus_tag=D5F88_10990 NZ_QYTI01000087.1 Protein Homology CDS 141 506 . + 0 ID=cds-WP_124773378.1;Parent=gene-D5F88_RS10980;Dbxref=GenBank:WP_124773378.1;Name=WP_124773378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480529.1;locus_tag=D5F88_RS10980;product=YopX family protein;protein_id=WP_124773378.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 506 775 . + . ID=gene-D5F88_RS10985;Name=D5F88_RS10985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10985;old_locus_tag=D5F88_10995 NZ_QYTI01000087.1 Protein Homology CDS 506 775 . + 0 ID=cds-WP_185696288.1;Parent=gene-D5F88_RS10985;Dbxref=GenBank:WP_185696288.1;Name=WP_185696288.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647862.1;locus_tag=D5F88_RS10985;product=hypothetical protein;protein_id=WP_185696288.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 779 1312 . + . ID=gene-D5F88_RS10990;Name=D5F88_RS10990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10990;old_locus_tag=D5F88_11000 NZ_QYTI01000087.1 Protein Homology CDS 779 1312 . + 0 ID=cds-WP_124773382.1;Parent=gene-D5F88_RS10990;Dbxref=GenBank:WP_124773382.1;Name=WP_124773382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001019144.1;locus_tag=D5F88_RS10990;product=DUF1642 domain-containing protein;protein_id=WP_124773382.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 1309 1575 . + . ID=gene-D5F88_RS10995;Name=D5F88_RS10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS10995;old_locus_tag=D5F88_11005 NZ_QYTI01000087.1 Protein Homology CDS 1309 1575 . + 0 ID=cds-WP_124773384.1;Parent=gene-D5F88_RS10995;Dbxref=GenBank:WP_124773384.1;Name=WP_124773384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017648018.1;locus_tag=D5F88_RS10995;product=hypothetical protein;protein_id=WP_124773384.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 1965 2399 . + . ID=gene-D5F88_RS11000;Name=D5F88_RS11000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11000;old_locus_tag=D5F88_11010 NZ_QYTI01000087.1 Protein Homology CDS 1965 2399 . + 0 ID=cds-WP_000142570.1-2;Parent=gene-D5F88_RS11000;Dbxref=GenBank:WP_000142570.1;Name=WP_000142570.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285442.1;locus_tag=D5F88_RS11000;product=ArpU family phage packaging/lysis transcriptional regulator;protein_id=WP_000142570.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 2565 2643 . + . ID=gene-D5F88_RS11005;Name=D5F88_RS11005;gbkey=Gene;gene_biotype=tRNA;locus_tag=D5F88_RS11005;old_locus_tag=D5F88_11015 NZ_QYTI01000087.1 tRNAscan-SE tRNA 2565 2643 . + . ID=rna-D5F88_RS11005;Parent=gene-D5F88_RS11005;gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS11005;product=tRNA-OTHER NZ_QYTI01000087.1 tRNAscan-SE exon 2565 2643 . + . ID=exon-D5F88_RS11005-1;Parent=rna-D5F88_RS11005;gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=D5F88_RS11005;product=tRNA-OTHER NZ_QYTI01000087.1 RefSeq gene 2950 3078 . + . ID=gene-D5F88_RS11860;Name=D5F88_RS11860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11860 NZ_QYTI01000087.1 GeneMarkS-2+ CDS 2950 3078 . + 0 ID=cds-WP_016480533.1-2;Parent=gene-D5F88_RS11860;Dbxref=GenBank:WP_016480533.1;Name=WP_016480533.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS11860;product=hypothetical protein;protein_id=WP_016480533.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 3132 3515 . - . ID=gene-D5F88_RS11010;Name=D5F88_RS11010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11010;old_locus_tag=D5F88_11020 NZ_QYTI01000087.1 Protein Homology CDS 3132 3515 . - 0 ID=cds-WP_016480534.1;Parent=gene-D5F88_RS11010;Dbxref=GenBank:WP_016480534.1;Name=WP_016480534.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647278.1;locus_tag=D5F88_RS11010;product=type II toxin-antitoxin system HicB family antitoxin;protein_id=WP_016480534.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 3559 3747 . - . ID=gene-D5F88_RS11015;Name=D5F88_RS11015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11015;old_locus_tag=D5F88_11025 NZ_QYTI01000087.1 Protein Homology CDS 3559 3747 . - 0 ID=cds-WP_001138286.1;Parent=gene-D5F88_RS11015;Dbxref=GenBank:WP_001138286.1;Name=WP_001138286.1;Ontology_term=GO:0003729;gbkey=CDS;go_function=mRNA binding|0003729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008089605.1;locus_tag=D5F88_RS11015;product=type II toxin-antitoxin system HicA family toxin;protein_id=WP_001138286.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 3877 4194 . + . ID=gene-D5F88_RS11020;Name=D5F88_RS11020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11020;old_locus_tag=D5F88_11030 NZ_QYTI01000087.1 Protein Homology CDS 3877 4194 . + 0 ID=cds-WP_000687301.1;Parent=gene-D5F88_RS11020;Dbxref=GenBank:WP_000687301.1;Name=WP_000687301.1;Ontology_term=GO:0003676,GO:0004519,GO:0008270;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647277.1;locus_tag=D5F88_RS11020;product=HNH endonuclease;protein_id=WP_000687301.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 4330 4686 . + . ID=gene-D5F88_RS11025;Name=D5F88_RS11025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11025;old_locus_tag=D5F88_11035 NZ_QYTI01000087.1 Protein Homology CDS 4330 4686 . + 0 ID=cds-WP_124773386.1;Parent=gene-D5F88_RS11025;Dbxref=GenBank:WP_124773386.1;Name=WP_124773386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343900.1;locus_tag=D5F88_RS11025;product=hypothetical protein;protein_id=WP_124773386.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 4683 6326 . + . ID=gene-D5F88_RS11030;Name=D5F88_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11030;old_locus_tag=D5F88_11040 NZ_QYTI01000087.1 Protein Homology CDS 4683 6326 . + 0 ID=cds-WP_124773388.1;Parent=gene-D5F88_RS11030;Dbxref=GenBank:WP_124773388.1;Name=WP_124773388.1;Ontology_term=GO:0004519;gbkey=CDS;go_function=endonuclease activity|0004519||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000628071.1;locus_tag=D5F88_RS11030;product=terminase TerL endonuclease subunit;protein_id=WP_124773388.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 6395 7543 . + . ID=gene-D5F88_RS11035;Name=D5F88_RS11035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11035;old_locus_tag=D5F88_11045 NZ_QYTI01000087.1 Protein Homology CDS 6395 7543 . + 0 ID=cds-WP_124773390.1;Parent=gene-D5F88_RS11035;Dbxref=GenBank:WP_124773390.1;Name=WP_124773390.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650597.1;locus_tag=D5F88_RS11035;product=phage portal protein;protein_id=WP_124773390.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 7524 8255 . + . ID=gene-D5F88_RS11040;Name=D5F88_RS11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11040;old_locus_tag=D5F88_11050 NZ_QYTI01000087.1 Protein Homology CDS 7524 8255 . + 0 ID=cds-WP_124773392.1;Parent=gene-D5F88_RS11040;Dbxref=GenBank:WP_124773392.1;Name=WP_124773392.1;Ontology_term=GO:0046797,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=viral procapsid maturation|0046797||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000192152.1;locus_tag=D5F88_RS11040;product=head maturation protease%2C ClpP-related;protein_id=WP_124773392.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 8277 9425 . + . ID=gene-D5F88_RS11045;Name=D5F88_RS11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11045;old_locus_tag=D5F88_11055 NZ_QYTI01000087.1 Protein Homology CDS 8277 9425 . + 0 ID=cds-WP_124773394.1;Parent=gene-D5F88_RS11045;Dbxref=GenBank:WP_124773394.1;Name=WP_124773394.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000178059.1;locus_tag=D5F88_RS11045;product=phage major capsid protein;protein_id=WP_124773394.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 9447 9740 . + . ID=gene-D5F88_RS11050;Name=D5F88_RS11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11050;old_locus_tag=D5F88_11060 NZ_QYTI01000087.1 Protein Homology CDS 9447 9740 . + 0 ID=cds-WP_124773396.1;Parent=gene-D5F88_RS11050;Dbxref=GenBank:WP_124773396.1;Name=WP_124773396.1;Ontology_term=GO:0016032;gbkey=CDS;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343313.1;locus_tag=D5F88_RS11050;product=head-tail connector protein;protein_id=WP_124773396.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 9712 9861 . + . ID=gene-D5F88_RS11740;Name=D5F88_RS11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11740 NZ_QYTI01000087.1 Protein Homology CDS 9712 9861 . + 0 ID=cds-WP_000868405.1;Parent=gene-D5F88_RS11740;Dbxref=GenBank:WP_000868405.1;Name=WP_000868405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000868405.1;locus_tag=D5F88_RS11740;product=hypothetical protein;protein_id=WP_000868405.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 9854 10201 . + . ID=gene-D5F88_RS11055;Name=D5F88_RS11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11055;old_locus_tag=D5F88_11065 NZ_QYTI01000087.1 Protein Homology CDS 9854 10201 . + 0 ID=cds-WP_124773398.1;Parent=gene-D5F88_RS11055;Dbxref=GenBank:WP_124773398.1;Name=WP_124773398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647239.1;locus_tag=D5F88_RS11055;product=phage head-tail adapter protein;protein_id=WP_124773398.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 10226 10597 . + . ID=gene-D5F88_RS11060;Name=D5F88_RS11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11060;old_locus_tag=D5F88_11070 NZ_QYTI01000087.1 Protein Homology CDS 10226 10597 . + 0 ID=cds-WP_124773404.1;Parent=gene-D5F88_RS11060;Dbxref=GenBank:WP_124773404.1;Name=WP_124773404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001865818.1;locus_tag=D5F88_RS11060;product=hypothetical protein;protein_id=WP_124773404.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 10590 10970 . + . ID=gene-D5F88_RS11065;Name=D5F88_RS11065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11065;old_locus_tag=D5F88_11075 NZ_QYTI01000087.1 Protein Homology CDS 10590 10970 . + 0 ID=cds-WP_124773400.1;Parent=gene-D5F88_RS11065;Dbxref=GenBank:WP_124773400.1;Name=WP_124773400.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000237791.1;locus_tag=D5F88_RS11065;product=hypothetical protein;protein_id=WP_124773400.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 10985 11596 . + . ID=gene-D5F88_RS11070;Name=D5F88_RS11070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11070;old_locus_tag=D5F88_11080 NZ_QYTI01000087.1 Protein Homology CDS 10985 11596 . + 0 ID=cds-WP_124773402.1;Parent=gene-D5F88_RS11070;Dbxref=GenBank:WP_124773402.1;Name=WP_124773402.1;Ontology_term=GO:0019068,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001149165.1;locus_tag=D5F88_RS11070;product=major tail protein;protein_id=WP_124773402.1;transl_table=11 NZ_QYTI01000087.1 RefSeq gene 11607 11909 . + . ID=gene-D5F88_RS11075;Name=gpG;gbkey=Gene;gene=gpG;gene_biotype=protein_coding;locus_tag=D5F88_RS11075;old_locus_tag=D5F88_11085 NZ_QYTI01000087.1 Protein Homology CDS 11607 11909 . + 0 ID=cds-WP_001281299.1;Parent=gene-D5F88_RS11075;Dbxref=GenBank:WP_001281299.1;Name=WP_001281299.1;gbkey=CDS;gene=gpG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001281299.1;locus_tag=D5F88_RS11075;product=phage tail assembly chaperone G;protein_id=WP_001281299.1;transl_table=11 ##sequence-region NZ_QYTI01000088.1 1 18442 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000088.1 RefSeq region 1 18442 . + . ID=NZ_QYTI01000088.1:1..18442;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000088.1 RefSeq pseudogene 1 731 . - . ID=gene-D5F88_RS11080;Name=D5F88_RS11080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11080;old_locus_tag=D5F88_11090;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000088.1 Protein Homology CDS 1 731 . - 0 ID=cds-D5F88_RS11080;Parent=gene-D5F88_RS11080;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS11080;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 1001 1534 . + . ID=gene-D5F88_RS11090;Name=D5F88_RS11090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11090;old_locus_tag=D5F88_11100 NZ_QYTI01000088.1 Protein Homology CDS 1001 1534 . + 0 ID=cds-WP_016502882.1;Parent=gene-D5F88_RS11090;Dbxref=GenBank:WP_016502882.1;Name=WP_016502882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000526054.1;locus_tag=D5F88_RS11090;product=hypothetical protein;protein_id=WP_016502882.1;transl_table=11 NZ_QYTI01000088.1 RefSeq pseudogene 1882 2206 . + . ID=gene-D5F88_RS11100;Name=D5F88_RS11100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11100;old_locus_tag=D5F88_11110;pseudo=true NZ_QYTI01000088.1 Protein Homology CDS 1882 2206 . + 0 ID=cds-D5F88_RS11100;Parent=gene-D5F88_RS11100;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017285002.1;locus_tag=D5F88_RS11100;product=hypothetical protein;pseudo=true;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 2597 2974 . + . ID=gene-D5F88_RS11105;Name=D5F88_RS11105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11105;old_locus_tag=D5F88_11115 NZ_QYTI01000088.1 Protein Homology CDS 2597 2974 . + 0 ID=cds-WP_086163338.1;Parent=gene-D5F88_RS11105;Dbxref=GenBank:WP_086163338.1;Name=WP_086163338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000479581.1;locus_tag=D5F88_RS11105;product=hypothetical protein;protein_id=WP_086163338.1;transl_table=11 NZ_QYTI01000088.1 RefSeq pseudogene 3214 3393 . + . ID=gene-D5F88_RS11895;Name=D5F88_RS11895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11895;old_locus_tag=D5F88_11120;partial=true;pseudo=true;start_range=.,3214 NZ_QYTI01000088.1 Protein Homology CDS 3214 3393 . + 0 ID=cds-D5F88_RS11895;Parent=gene-D5F88_RS11895;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000926392.1;locus_tag=D5F88_RS11895;partial=true;product=DUF4176 domain-containing protein;pseudo=true;start_range=.,3214;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 3861 3983 . + . ID=gene-D5F88_RS11115;Name=D5F88_RS11115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11115;old_locus_tag=D5F88_11125 NZ_QYTI01000088.1 Protein Homology CDS 3861 3983 . + 0 ID=cds-WP_000472358.1;Parent=gene-D5F88_RS11115;Dbxref=GenBank:WP_000472358.1;Name=WP_000472358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000472358.1;locus_tag=D5F88_RS11115;product=lipoprotein;protein_id=WP_000472358.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 4521 6260 . + . ID=gene-D5F88_RS11120;Name=D5F88_RS11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11120;old_locus_tag=D5F88_11130 NZ_QYTI01000088.1 Protein Homology CDS 4521 6260 . + 0 ID=cds-WP_016502878.1;Parent=gene-D5F88_RS11120;Dbxref=GenBank:WP_016502878.1;Name=WP_016502878.1;Ontology_term=GO:0000160,GO:0071555,GO:0000155,GO:0004673,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000171904.1;locus_tag=D5F88_RS11120;product=sensor histidine kinase;protein_id=WP_016502878.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 6272 7006 . + . ID=gene-D5F88_RS11125;Name=ltdR;gbkey=Gene;gene=ltdR;gene_biotype=protein_coding;locus_tag=D5F88_RS11125;old_locus_tag=D5F88_11135 NZ_QYTI01000088.1 Protein Homology CDS 6272 7006 . + 0 ID=cds-WP_000866964.1;Parent=gene-D5F88_RS11125;Dbxref=GenBank:WP_000866964.1;Name=WP_000866964.1;gbkey=CDS;gene=ltdR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000866963.1;locus_tag=D5F88_RS11125;product=response regulator transcription factor LtdR;protein_id=WP_000866964.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 7162 8646 . + . ID=gene-D5F88_RS11130;Name=D5F88_RS11130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11130;old_locus_tag=D5F88_11140 NZ_QYTI01000088.1 Protein Homology CDS 7162 8646 . + 0 ID=cds-WP_016502877.1;Parent=gene-D5F88_RS11130;Dbxref=GenBank:WP_016502877.1;Name=WP_016502877.1;Ontology_term=GO:0015833,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768250.1;locus_tag=D5F88_RS11130;product=carbon starvation CstA family protein;protein_id=WP_016502877.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 8847 9419 . + . ID=gene-D5F88_RS11135;Name=D5F88_RS11135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11135;old_locus_tag=D5F88_11145 NZ_QYTI01000088.1 Protein Homology CDS 8847 9419 . + 0 ID=cds-WP_001231795.1;Parent=gene-D5F88_RS11135;Dbxref=GenBank:WP_001231795.1;Name=WP_001231795.1;Ontology_term=GO:0018104,GO:0071972;gbkey=CDS;go_function=peptidoglycan L%2CD-transpeptidase activity|0071972||IEA;go_process=peptidoglycan-protein cross-linking|0018104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001231800.1;locus_tag=D5F88_RS11135;product=L%2CD-transpeptidase;protein_id=WP_001231795.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 9695 10546 . + . ID=gene-D5F88_RS11140;Name=ylqF;gbkey=Gene;gene=ylqF;gene_biotype=protein_coding;locus_tag=D5F88_RS11140;old_locus_tag=D5F88_11150 NZ_QYTI01000088.1 Protein Homology CDS 9695 10546 . + 0 ID=cds-WP_000201279.1;Parent=gene-D5F88_RS11140;Dbxref=GenBank:WP_000201279.1;Name=WP_000201279.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=ylqF;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000201281.1;locus_tag=D5F88_RS11140;product=ribosome biogenesis GTPase YlqF;protein_id=WP_000201279.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 10533 11294 . + . ID=gene-D5F88_RS11145;Name=D5F88_RS11145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11145;old_locus_tag=D5F88_11155 NZ_QYTI01000088.1 Protein Homology CDS 10533 11294 . + 0 ID=cds-WP_000201090.1;Parent=gene-D5F88_RS11145;Dbxref=GenBank:WP_000201090.1;Name=WP_000201090.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480754.1;locus_tag=D5F88_RS11145;product=ribonuclease HII;protein_id=WP_000201090.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 11315 11869 . + . ID=gene-D5F88_RS11150;Name=D5F88_RS11150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11150;old_locus_tag=D5F88_11160 NZ_QYTI01000088.1 Protein Homology CDS 11315 11869 . + 0 ID=cds-WP_016502872.1;Parent=gene-D5F88_RS11150;Dbxref=GenBank:WP_016502872.1;Name=WP_016502872.1;Ontology_term=GO:0016407;gbkey=CDS;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016502872.1;locus_tag=D5F88_RS11150;product=sugar O-acetyltransferase;protein_id=WP_016502872.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 12103 13065 . + . ID=gene-D5F88_RS11155;Name=D5F88_RS11155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11155;old_locus_tag=D5F88_11165 NZ_QYTI01000088.1 Protein Homology CDS 12103 13065 . + 0 ID=cds-WP_000735584.1;Parent=gene-D5F88_RS11155;Dbxref=GenBank:WP_000735584.1;Name=WP_000735584.1;Ontology_term=GO:0006826,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=iron ion transport|0006826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000735591.1;locus_tag=D5F88_RS11155;product=ABC transporter permease;protein_id=WP_000735584.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 13062 14036 . + . ID=gene-D5F88_RS11160;Name=D5F88_RS11160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11160;old_locus_tag=D5F88_11170 NZ_QYTI01000088.1 Protein Homology CDS 13062 14036 . + 0 ID=cds-WP_000588585.1;Parent=gene-D5F88_RS11160;Dbxref=GenBank:WP_000588585.1;Name=WP_000588585.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649486.1;locus_tag=D5F88_RS11160;product=iron chelate uptake ABC transporter family permease subunit;protein_id=WP_000588585.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 14033 14794 . + . ID=gene-D5F88_RS11165;Name=D5F88_RS11165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11165;old_locus_tag=D5F88_11175 NZ_QYTI01000088.1 Protein Homology CDS 14033 14794 . + 0 ID=cds-WP_000614756.1;Parent=gene-D5F88_RS11165;Dbxref=GenBank:WP_000614756.1;Name=WP_000614756.1;Ontology_term=GO:0006826,GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=iron ion transport|0006826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000614752.1;locus_tag=D5F88_RS11165;product=iron ABC transporter ATP-binding protein;protein_id=WP_000614756.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 14856 15884 . + . ID=gene-D5F88_RS11170;Name=D5F88_RS11170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11170;old_locus_tag=D5F88_11180 NZ_QYTI01000088.1 Protein Homology CDS 14856 15884 . + 0 ID=cds-WP_086163336.1;Parent=gene-D5F88_RS11170;Dbxref=GenBank:WP_086163336.1;Name=WP_086163336.1;Ontology_term=GO:0005524,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000162765.1;locus_tag=D5F88_RS11170;product=siderophore ABC transporter substrate-binding protein;protein_id=WP_086163336.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 16022 16864 . + . ID=gene-D5F88_RS11175;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=protein_coding;locus_tag=D5F88_RS11175;old_locus_tag=D5F88_11185 NZ_QYTI01000088.1 Protein Homology CDS 16022 16864 . + 0 ID=cds-WP_086163335.1;Parent=gene-D5F88_RS11175;Dbxref=GenBank:WP_086163335.1;Name=WP_086163335.1;Ontology_term=GO:0009294;gbkey=CDS;gene=dprA;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001015242.1;locus_tag=D5F88_RS11175;product=DNA-processing protein DprA;protein_id=WP_086163335.1;transl_table=11 NZ_QYTI01000088.1 RefSeq gene 16959 18442 . + . ID=gene-D5F88_RS11180;Name=topA;end_range=18442,.;gbkey=Gene;gene=topA;gene_biotype=protein_coding;locus_tag=D5F88_RS11180;old_locus_tag=D5F88_11190;partial=true NZ_QYTI01000088.1 Protein Homology CDS 16959 18442 . + 0 ID=cds-WP_124773406.1;Parent=gene-D5F88_RS11180;Dbxref=GenBank:WP_124773406.1;Name=WP_124773406.1;Ontology_term=GO:0006260,GO:0006265,GO:0003677,GO:0003917,GO:0005737;end_range=18442,.;gbkey=CDS;gene=topA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type I (single strand cut%2C ATP-independent) activity|0003917||IEA;go_process=DNA replication|0006260||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646538.1;locus_tag=D5F88_RS11180;partial=true;product=type I DNA topoisomerase;protein_id=WP_124773406.1;transl_table=11 ##sequence-region NZ_QYTI01000089.1 1 2377 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000089.1 RefSeq region 1 2377 . + . ID=NZ_QYTI01000089.1:1..2377;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000089.1 RefSeq gene 149 889 . - . ID=gene-D5F88_RS11185;Name=D5F88_RS11185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11185;old_locus_tag=D5F88_11195 NZ_QYTI01000089.1 Protein Homology CDS 149 889 . - 0 ID=cds-WP_124773408.1;Parent=gene-D5F88_RS11185;Dbxref=GenBank:WP_124773408.1;Name=WP_124773408.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011184435.1;locus_tag=D5F88_RS11185;product=XRE family transcriptional regulator;protein_id=WP_124773408.1;transl_table=11 NZ_QYTI01000089.1 RefSeq gene 1439 2080 . - . ID=gene-D5F88_RS11190;Name=D5F88_RS11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11190;old_locus_tag=D5F88_11200 NZ_QYTI01000089.1 Protein Homology CDS 1439 2080 . - 0 ID=cds-WP_124773410.1;Parent=gene-D5F88_RS11190;Dbxref=GenBank:WP_124773410.1;Name=WP_124773410.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001008980.1;locus_tag=D5F88_RS11190;product=hypothetical protein;protein_id=WP_124773410.1;transl_table=11 NZ_QYTI01000089.1 RefSeq gene 2133 2336 . + . ID=gene-D5F88_RS11195;Name=D5F88_RS11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11195;old_locus_tag=D5F88_11205 NZ_QYTI01000089.1 Protein Homology CDS 2133 2336 . + 0 ID=cds-WP_016480567.1-2;Parent=gene-D5F88_RS11195;Dbxref=GenBank:WP_016480567.1;Name=WP_016480567.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000658998.1;locus_tag=D5F88_RS11195;product=hypothetical protein;protein_id=WP_016480567.1;transl_table=11 ##sequence-region NZ_QYTI01000009.1 1 6619 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000009.1 RefSeq region 1 6619 . + . ID=NZ_QYTI01000009.1:1..6619;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000009.1 RefSeq gene 1 2666 . + . ID=gene-D5F88_RS01830;Name=D5F88_RS01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01830;old_locus_tag=D5F88_01835;partial=true;start_range=.,1 NZ_QYTI01000009.1 Protein Homology CDS 1 2666 . + 2 ID=cds-WP_142997428.1;Parent=gene-D5F88_RS01830;Dbxref=GenBank:WP_142997428.1;Name=WP_142997428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000553791.1;locus_tag=D5F88_RS01830;partial=true;product=CHAP domain-containing protein;protein_id=WP_142997428.1;start_range=.,1;transl_table=11 NZ_QYTI01000009.1 RefSeq gene 2679 4670 . + . ID=gene-D5F88_RS01835;Name=D5F88_RS01835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01835;old_locus_tag=D5F88_01840 NZ_QYTI01000009.1 Protein Homology CDS 2679 4670 . + 0 ID=cds-WP_124773167.1;Parent=gene-D5F88_RS01835;Dbxref=GenBank:WP_124773167.1;Name=WP_124773167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000214870.1;locus_tag=D5F88_RS01835;product=DUF859 family phage minor structural protein;protein_id=WP_124773167.1;transl_table=11 NZ_QYTI01000009.1 RefSeq gene 4685 5011 . + . ID=gene-D5F88_RS01840;Name=D5F88_RS01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01840;old_locus_tag=D5F88_01845 NZ_QYTI01000009.1 Protein Homology CDS 4685 5011 . + 0 ID=cds-WP_124773169.1;Parent=gene-D5F88_RS01840;Dbxref=GenBank:WP_124773169.1;Name=WP_124773169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003082983.1;locus_tag=D5F88_RS01840;product=DUF1366 domain-containing protein;protein_id=WP_124773169.1;transl_table=11 NZ_QYTI01000009.1 RefSeq gene 5040 5198 . + . ID=gene-D5F88_RS01845;Name=D5F88_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01845;old_locus_tag=D5F88_01850 NZ_QYTI01000009.1 Protein Homology CDS 5040 5198 . + 0 ID=cds-WP_223297809.1;Parent=gene-D5F88_RS01845;Dbxref=GenBank:WP_223297809.1;Name=WP_223297809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016355971.1;locus_tag=D5F88_RS01845;product=CD1375 family protein;protein_id=WP_223297809.1;transl_table=11 NZ_QYTI01000009.1 RefSeq gene 5217 5504 . + . ID=gene-D5F88_RS01850;Name=D5F88_RS01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01850;old_locus_tag=D5F88_01855 NZ_QYTI01000009.1 Protein Homology CDS 5217 5504 . + 0 ID=cds-WP_124749061.1;Parent=gene-D5F88_RS01850;Dbxref=GenBank:WP_124749061.1;Name=WP_124749061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000564987.1;locus_tag=D5F88_RS01850;product=hypothetical protein;protein_id=WP_124749061.1;transl_table=11 NZ_QYTI01000009.1 RefSeq gene 5507 5734 . + . ID=gene-D5F88_RS01855;Name=D5F88_RS01855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01855;old_locus_tag=D5F88_01860 NZ_QYTI01000009.1 Protein Homology CDS 5507 5734 . + 0 ID=cds-WP_016480475.1;Parent=gene-D5F88_RS01855;Dbxref=GenBank:WP_016480475.1;Name=WP_016480475.1;Ontology_term=GO:0140911;gbkey=CDS;go_function=pore-forming activity|0140911||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480475.1;locus_tag=D5F88_RS01855;product=phage holin;protein_id=WP_016480475.1;transl_table=11 NZ_QYTI01000009.1 RefSeq gene 5862 6619 . + . ID=gene-D5F88_RS01860;Name=D5F88_RS01860;end_range=6619,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS01860;old_locus_tag=D5F88_01865;partial=true NZ_QYTI01000009.1 Protein Homology CDS 5862 6619 . + 0 ID=cds-WP_260424966.1;Parent=gene-D5F88_RS01860;Dbxref=GenBank:WP_260424966.1;Name=WP_260424966.1;Ontology_term=GO:0009253,GO:0016998,GO:0003796;end_range=6619,.;gbkey=CDS;go_function=lysozyme activity|0003796||IEA;go_process=peptidoglycan catabolic process|0009253||IEA,cell wall macromolecule catabolic process|0016998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480477.1;locus_tag=D5F88_RS01860;partial=true;product=GH25 family lysozyme;protein_id=WP_260424966.1;transl_table=11 ##sequence-region NZ_QYTI01000090.1 1 8826 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000090.1 RefSeq region 1 8826 . + . ID=NZ_QYTI01000090.1:1..8826;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000090.1 RefSeq pseudogene 1 911 . - . ID=gene-D5F88_RS11200;Name=D5F88_RS11200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11200;old_locus_tag=D5F88_11210;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000090.1 Protein Homology CDS 1 911 . - 0 ID=cds-D5F88_RS11200;Parent=gene-D5F88_RS11200;Note=internal stop%3B incomplete%3B missing C-terminus;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001068642.1;locus_tag=D5F88_RS11200;partial=true;product=UvrD-helicase domain-containing protein;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000090.1 RefSeq gene 1017 1403 . - . ID=gene-D5F88_RS11205;Name=D5F88_RS11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11205;old_locus_tag=D5F88_11215 NZ_QYTI01000090.1 Protein Homology CDS 1017 1403 . - 0 ID=cds-WP_000671265.1;Parent=gene-D5F88_RS11205;Dbxref=GenBank:WP_000671265.1;Name=WP_000671265.1;Ontology_term=GO:0016790,GO:0016836,GO:0047617;gbkey=CDS;go_function=thiolester hydrolase activity|0016790||IEA,hydro-lyase activity|0016836||IEA,fatty acyl-CoA hydrolase activity|0047617||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480824.1;locus_tag=D5F88_RS11205;product=PaaI family thioesterase;protein_id=WP_000671265.1;transl_table=11 NZ_QYTI01000090.1 RefSeq gene 1536 2861 . - . ID=gene-D5F88_RS11210;Name=D5F88_RS11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11210;old_locus_tag=D5F88_11220 NZ_QYTI01000090.1 Protein Homology CDS 1536 2861 . - 0 ID=cds-WP_000174081.1;Parent=gene-D5F88_RS11210;Dbxref=GenBank:WP_000174081.1;Name=WP_000174081.1;Ontology_term=GO:0015851,GO:0055085,GO:0015205,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=nucleobase transmembrane transporter activity|0015205||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleobase transport|0015851||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020480284.1;locus_tag=D5F88_RS11210;product=uracil-xanthine permease family protein;protein_id=WP_000174081.1;transl_table=11 NZ_QYTI01000090.1 cmsearch riboswitch 3169 3301 . + . ID=id-NZ_QYTI01000090.1:3169..3301;Dbxref=RFAM:RF00504;Note=glycine riboswitch;bound_moiety=glycine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_QYTI01000090.1 RefSeq gene 3459 4805 . + . ID=gene-D5F88_RS11215;Name=D5F88_RS11215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11215;old_locus_tag=D5F88_11225 NZ_QYTI01000090.1 Protein Homology CDS 3459 4805 . + 0 ID=cds-WP_086163368.1;Parent=gene-D5F88_RS11215;Dbxref=GenBank:WP_086163368.1;Name=WP_086163368.1;Ontology_term=GO:0006814,GO:0006865,GO:0005283,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid:sodium symporter activity|0005283||IEA,symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000956728.1;locus_tag=D5F88_RS11215;product=alanine/glycine:cation symporter family protein;protein_id=WP_086163368.1;transl_table=11 NZ_QYTI01000090.1 RefSeq gene 4869 6104 . + . ID=gene-D5F88_RS11220;Name=D5F88_RS11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11220;old_locus_tag=D5F88_11230 NZ_QYTI01000090.1 Protein Homology CDS 4869 6104 . + 0 ID=cds-WP_000235899.1;Parent=gene-D5F88_RS11220;Dbxref=GenBank:WP_000235899.1;Name=WP_000235899.1;Ontology_term=GO:0006812,GO:0055085,GO:0008324,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=monoatomic cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643783.1;locus_tag=D5F88_RS11220;product=cation diffusion facilitator family transporter;protein_id=WP_000235899.1;transl_table=11 NZ_QYTI01000090.1 RefSeq gene 6263 6655 . + . ID=gene-D5F88_RS11225;Name=D5F88_RS11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11225;old_locus_tag=D5F88_11235 NZ_QYTI01000090.1 Protein Homology CDS 6263 6655 . + 0 ID=cds-WP_086163369.1;Parent=gene-D5F88_RS11225;Dbxref=GenBank:WP_086163369.1;Name=WP_086163369.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647124.1;locus_tag=D5F88_RS11225;product=CidA/LrgA family protein;protein_id=WP_086163369.1;transl_table=11 NZ_QYTI01000090.1 RefSeq gene 6636 7331 . + . ID=gene-D5F88_RS11230;Name=D5F88_RS11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11230;old_locus_tag=D5F88_11240 NZ_QYTI01000090.1 Protein Homology CDS 6636 7331 . + 0 ID=cds-WP_000224245.1;Parent=gene-D5F88_RS11230;Dbxref=GenBank:WP_000224245.1;Name=WP_000224245.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632044.1;locus_tag=D5F88_RS11230;product=LrgB family protein;protein_id=WP_000224245.1;transl_table=11 NZ_QYTI01000090.1 RefSeq gene 7400 8023 . + . ID=gene-D5F88_RS11235;Name=D5F88_RS11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11235;old_locus_tag=D5F88_11245 NZ_QYTI01000090.1 Protein Homology CDS 7400 8023 . + 0 ID=cds-WP_000612517.1;Parent=gene-D5F88_RS11235;Dbxref=GenBank:WP_000612517.1;Name=WP_000612517.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000612522.1;locus_tag=D5F88_RS11235;product=DUF3862 domain-containing protein;protein_id=WP_000612517.1;transl_table=11 NZ_QYTI01000090.1 RefSeq gene 8308 8586 . + . ID=gene-D5F88_RS11240;Name=D5F88_RS11240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11240;old_locus_tag=D5F88_11250 NZ_QYTI01000090.1 Protein Homology CDS 8308 8586 . + 0 ID=cds-WP_257638799.1;Parent=gene-D5F88_RS11240;Dbxref=GenBank:WP_257638799.1;Name=WP_257638799.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025695.7;locus_tag=D5F88_RS11240;product=DUF4393 domain-containing protein;protein_id=WP_257638799.1;transl_table=11 ##sequence-region NZ_QYTI01000091.1 1 407 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000091.1 RefSeq region 1 407 . + . ID=NZ_QYTI01000091.1:1..407;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000091.1 RefSeq pseudogene 1 336 . - . ID=gene-D5F88_RS11250;Name=truB;gbkey=Gene;gene=truB;gene_biotype=pseudogene;locus_tag=D5F88_RS11250;old_locus_tag=D5F88_11260;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000091.1 Protein Homology CDS 1 336 . - 0 ID=cds-D5F88_RS11250;Parent=gene-D5F88_RS11250;Note=catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=truB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001876923.1;locus_tag=D5F88_RS11250;partial=true;product=tRNA pseudouridine(55) synthase TruB;pseudo=true;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000092.1 1 1011 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000092.1 RefSeq region 1 1011 . + . ID=NZ_QYTI01000092.1:1..1011;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000092.1 RefSeq gene 1 1011 . + . ID=gene-D5F88_RS11255;Name=D5F88_RS11255;end_range=1011,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11255;old_locus_tag=D5F88_11265;partial=true;start_range=.,1 NZ_QYTI01000092.1 Protein Homology CDS 1 1011 . + 1 ID=cds-WP_311768274.1;Parent=gene-D5F88_RS11255;Dbxref=GenBank:WP_311768274.1;Name=WP_311768274.1;Ontology_term=GO:0006508,GO:0004222;end_range=1011,.;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000599042.1;locus_tag=D5F88_RS11255;partial=true;product=M13-type metalloendopeptidase;protein_id=WP_311768274.1;start_range=.,1;transl_table=11 ##sequence-region NZ_QYTI01000093.1 1 12747 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000093.1 RefSeq region 1 12747 . + . ID=NZ_QYTI01000093.1:1..12747;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000093.1 RefSeq gene 32 1366 . + . ID=gene-D5F88_RS11260;Name=trmFO;gbkey=Gene;gene=trmFO;gene_biotype=protein_coding;locus_tag=D5F88_RS11260;old_locus_tag=D5F88_11270 NZ_QYTI01000093.1 Protein Homology CDS 32 1366 . + 0 ID=cds-WP_016502848.1;Parent=gene-D5F88_RS11260;Dbxref=GenBank:WP_016502848.1;Name=WP_016502848.1;Ontology_term=GO:0008033,GO:0050660;gbkey=CDS;gene=trmFO;go_function=flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000083753.1;locus_tag=D5F88_RS11260;product=methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO;protein_id=WP_016502848.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 1453 2196 . + . ID=gene-D5F88_RS11265;Name=D5F88_RS11265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11265;old_locus_tag=D5F88_11275 NZ_QYTI01000093.1 Protein Homology CDS 1453 2196 . + 0 ID=cds-WP_000291479.1;Parent=gene-D5F88_RS11265;Dbxref=GenBank:WP_000291479.1;Name=WP_000291479.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000559006.1;locus_tag=D5F88_RS11265;product=GNAT family N-acetyltransferase;protein_id=WP_000291479.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 2329 3177 . + . ID=gene-D5F88_RS11270;Name=D5F88_RS11270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11270;old_locus_tag=D5F88_11280 NZ_QYTI01000093.1 Protein Homology CDS 2329 3177 . + 0 ID=cds-WP_000694284.1;Parent=gene-D5F88_RS11270;Dbxref=GenBank:WP_000694284.1;Name=WP_000694284.1;Ontology_term=GO:0042626,GO:0140359,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646539.1;locus_tag=D5F88_RS11270;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=WP_000694284.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 3209 3697 . - . ID=gene-D5F88_RS11275;Name=D5F88_RS11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11275;old_locus_tag=D5F88_11285 NZ_QYTI01000093.1 Protein Homology CDS 3209 3697 . - 0 ID=cds-WP_001140791.1;Parent=gene-D5F88_RS11275;Dbxref=GenBank:WP_001140791.1;Name=WP_001140791.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001140790.1;locus_tag=D5F88_RS11275;product=PASTA domain-containing protein;protein_id=WP_001140791.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 3863 4825 . + . ID=gene-D5F88_RS11280;Name=D5F88_RS11280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11280;old_locus_tag=D5F88_11290 NZ_QYTI01000093.1 Protein Homology CDS 3863 4825 . + 0 ID=cds-WP_001253128.1;Parent=gene-D5F88_RS11280;Dbxref=GenBank:WP_001253128.1;Name=WP_001253128.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001253131.1;locus_tag=D5F88_RS11280;product=S41 family peptidase;protein_id=WP_001253128.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 4851 5603 . + . ID=gene-D5F88_RS11285;Name=D5F88_RS11285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11285;old_locus_tag=D5F88_11295 NZ_QYTI01000093.1 Protein Homology CDS 4851 5603 . + 0 ID=cds-WP_000923535.1;Parent=gene-D5F88_RS11285;Dbxref=GenBank:WP_000923535.1;Name=WP_000923535.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650232.1;locus_tag=D5F88_RS11285;product=ABC transporter ATP-binding protein;protein_id=WP_000923535.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 5605 7560 . + . ID=gene-D5F88_RS11290;Name=D5F88_RS11290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11290;old_locus_tag=D5F88_11300 NZ_QYTI01000093.1 Protein Homology CDS 5605 7560 . + 0 ID=cds-WP_000499553.1;Parent=gene-D5F88_RS11290;Dbxref=GenBank:WP_000499553.1;Name=WP_000499553.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771661.1;locus_tag=D5F88_RS11290;product=FtsX-like permease family protein;protein_id=WP_000499553.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 7670 8338 . + . ID=gene-D5F88_RS11295;Name=D5F88_RS11295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11295;old_locus_tag=D5F88_11305 NZ_QYTI01000093.1 Protein Homology CDS 7670 8338 . + 0 ID=cds-WP_000076874.1;Parent=gene-D5F88_RS11295;Dbxref=GenBank:WP_000076874.1;Name=WP_000076874.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000076877.1;locus_tag=D5F88_RS11295;product=response regulator transcription factor;protein_id=WP_000076874.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 8335 9273 . + . ID=gene-D5F88_RS11300;Name=D5F88_RS11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11300;old_locus_tag=D5F88_11310 NZ_QYTI01000093.1 Protein Homology CDS 8335 9273 . + 0 ID=cds-WP_000620980.1;Parent=gene-D5F88_RS11300;Dbxref=GenBank:WP_000620980.1;Name=WP_000620980.1;Ontology_term=GO:0000160,GO:0007165,GO:0000155,GO:0004673,GO:0005524,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000620981.1;locus_tag=D5F88_RS11300;product=sensor histidine kinase;protein_id=WP_000620980.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 9311 10381 . - . ID=gene-D5F88_RS11305;Name=xerS;gbkey=Gene;gene=xerS;gene_biotype=protein_coding;locus_tag=D5F88_RS11305;old_locus_tag=D5F88_11315 NZ_QYTI01000093.1 Protein Homology CDS 9311 10381 . - 0 ID=cds-WP_000817925.1;Parent=gene-D5F88_RS11305;Dbxref=GenBank:WP_000817925.1;Name=WP_000817925.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;gene=xerS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012658412.1;locus_tag=D5F88_RS11305;product=tyrosine recombinase XerS;protein_id=WP_000817925.1;transl_table=11 NZ_QYTI01000093.1 RefSeq gene 10832 12493 . + . ID=gene-D5F88_RS11310;Name=D5F88_RS11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11310;old_locus_tag=D5F88_11320 NZ_QYTI01000093.1 Protein Homology CDS 10832 12493 . + 0 ID=cds-WP_016502855.1;Parent=gene-D5F88_RS11310;Dbxref=GenBank:WP_016502855.1;Name=WP_016502855.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000093963.1;locus_tag=D5F88_RS11310;product=peptide ABC transporter substrate-binding protein;protein_id=WP_016502855.1;transl_table=11 NZ_QYTI01000093.1 RefSeq pseudogene 12526 12747 . - . ID=gene-D5F88_RS11315;Name=D5F88_RS11315;end_range=12747,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11315;old_locus_tag=D5F88_11325;partial=true;pseudo=true NZ_QYTI01000093.1 Protein Homology CDS 12526 12747 . - 0 ID=cds-D5F88_RS11315;Parent=gene-D5F88_RS11315;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=12747,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002306868.1;locus_tag=D5F88_RS11315;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000094.1 1 13848 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000094.1 RefSeq region 1 13848 . + . ID=NZ_QYTI01000094.1:1..13848;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000094.1 RefSeq gene 1 549 . + . ID=gene-D5F88_RS11320;Name=D5F88_RS11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11320;old_locus_tag=D5F88_11330;partial=true;start_range=.,1 NZ_QYTI01000094.1 Protein Homology CDS 1 549 . + 0 ID=cds-WP_124773412.1;Parent=gene-D5F88_RS11320;Dbxref=GenBank:WP_124773412.1;Name=WP_124773412.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS11320;partial=true;product=IS3 family transposase;protein_id=WP_124773412.1;start_range=.,1;transl_table=11 NZ_QYTI01000094.1 RefSeq pseudogene 586 735 . - . ID=gene-D5F88_RS11325;Name=D5F88_RS11325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11325;old_locus_tag=D5F88_11335;partial=true;pseudo=true;start_range=.,586 NZ_QYTI01000094.1 Protein Homology CDS 586 735 . - 0 ID=cds-D5F88_RS11325;Parent=gene-D5F88_RS11325;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000752178.1;locus_tag=D5F88_RS11325;partial=true;product=GNAT family N-acetyltransferase;pseudo=true;start_range=.,586;transl_table=11 NZ_QYTI01000094.1 RefSeq gene 975 2387 . - . ID=gene-D5F88_RS11330;Name=D5F88_RS11330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11330;old_locus_tag=D5F88_11340 NZ_QYTI01000094.1 Protein Homology CDS 975 2387 . - 0 ID=cds-WP_124773414.1;Parent=gene-D5F88_RS11330;Dbxref=GenBank:WP_124773414.1;Name=WP_124773414.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017643060.1;locus_tag=D5F88_RS11330;product=glycosyltransferase family 2 protein;protein_id=WP_124773414.1;transl_table=11 NZ_QYTI01000094.1 RefSeq gene 2527 4686 . - . ID=gene-D5F88_RS11335;Name=D5F88_RS11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11335;old_locus_tag=D5F88_11345 NZ_QYTI01000094.1 Protein Homology CDS 2527 4686 . - 0 ID=cds-WP_086163440.1;Parent=gene-D5F88_RS11335;Dbxref=GenBank:WP_086163440.1;Name=WP_086163440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000760424.1;locus_tag=D5F88_RS11335;product=hypothetical protein;protein_id=WP_086163440.1;transl_table=11 NZ_QYTI01000094.1 RefSeq gene 4693 6138 . - . ID=gene-D5F88_RS11340;Name=D5F88_RS11340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11340;old_locus_tag=D5F88_11350 NZ_QYTI01000094.1 Protein Homology CDS 4693 6138 . - 0 ID=cds-WP_000533132.1;Parent=gene-D5F88_RS11340;Dbxref=GenBank:WP_000533132.1;Name=WP_000533132.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000533135.1;locus_tag=D5F88_RS11340;product=CotH kinase family protein;protein_id=WP_000533132.1;transl_table=11 NZ_QYTI01000094.1 RefSeq gene 6131 6808 . - . ID=gene-D5F88_RS11345;Name=D5F88_RS11345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11345;old_locus_tag=D5F88_11355 NZ_QYTI01000094.1 Protein Homology CDS 6131 6808 . - 0 ID=cds-WP_000654036.1;Parent=gene-D5F88_RS11345;Dbxref=GenBank:WP_000654036.1;Name=WP_000654036.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650973.1;locus_tag=D5F88_RS11345;product=DUF4956 domain-containing protein;protein_id=WP_000654036.1;transl_table=11 NZ_QYTI01000094.1 RefSeq gene 6859 7554 . - . ID=gene-D5F88_RS11350;Name=D5F88_RS11350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11350;old_locus_tag=D5F88_11360 NZ_QYTI01000094.1 Protein Homology CDS 6859 7554 . - 0 ID=cds-WP_016503088.1;Parent=gene-D5F88_RS11350;Dbxref=GenBank:WP_016503088.1;Name=WP_016503088.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001006716.1;locus_tag=D5F88_RS11350;product=polyphosphate polymerase domain-containing protein;protein_id=WP_016503088.1;transl_table=11 NZ_QYTI01000094.1 RefSeq gene 7919 9256 . - . ID=gene-D5F88_RS11355;Name=brnQ;gbkey=Gene;gene=brnQ;gene_biotype=protein_coding;locus_tag=D5F88_RS11355;old_locus_tag=D5F88_11365 NZ_QYTI01000094.1 Protein Homology CDS 7919 9256 . - 0 ID=cds-WP_086163441.1;Parent=gene-D5F88_RS11355;Dbxref=GenBank:WP_086163441.1;Name=WP_086163441.1;Ontology_term=GO:0015803,GO:0015658,GO:0016020;gbkey=CDS;gene=brnQ;go_component=membrane|0016020||IEA;go_function=branched-chain amino acid transmembrane transporter activity|0015658||IEA;go_process=branched-chain amino acid transport|0015803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000239241.1;locus_tag=D5F88_RS11355;product=branched-chain amino acid transport system II carrier protein;protein_id=WP_086163441.1;transl_table=11 NZ_QYTI01000094.1 RefSeq gene 9451 11448 . - . ID=gene-D5F88_RS11360;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=D5F88_RS11360;old_locus_tag=D5F88_11370 NZ_QYTI01000094.1 Protein Homology CDS 9451 11448 . - 0 ID=cds-WP_016503090.1;Parent=gene-D5F88_RS11360;Dbxref=GenBank:WP_016503090.1;Name=WP_016503090.1;Ontology_term=GO:0006431,GO:0000049,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=tRNA binding|0000049||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058704.1;locus_tag=D5F88_RS11360;product=methionine--tRNA ligase;protein_id=WP_016503090.1;transl_table=11 NZ_QYTI01000094.1 RefSeq gene 11666 12712 . - . ID=gene-D5F88_RS11365;Name=D5F88_RS11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11365;old_locus_tag=D5F88_11375 NZ_QYTI01000094.1 Protein Homology CDS 11666 12712 . - 0 ID=cds-WP_124758757.1;Parent=gene-D5F88_RS11365;Dbxref=GenBank:WP_124758757.1;Name=WP_124758757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006267669.1;locus_tag=D5F88_RS11365;product=ORF6N domain-containing protein;protein_id=WP_124758757.1;transl_table=11 NZ_QYTI01000094.1 RefSeq gene 12705 13199 . - . ID=gene-D5F88_RS11865;Name=D5F88_RS11865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11865 NZ_QYTI01000094.1 GeneMarkS-2+ CDS 12705 13199 . - 0 ID=cds-WP_260424982.1;Parent=gene-D5F88_RS11865;Dbxref=GenBank:WP_260424982.1;Name=WP_260424982.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=D5F88_RS11865;product=hypothetical protein;protein_id=WP_260424982.1;transl_table=11 NZ_QYTI01000094.1 RefSeq pseudogene 13290 13848 . + . ID=gene-D5F88_RS11380;Name=D5F88_RS11380;end_range=13848,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11380;old_locus_tag=D5F88_11390;partial=true;pseudo=true NZ_QYTI01000094.1 Protein Homology CDS 13290 13848 . + 0 ID=cds-D5F88_RS11380;Parent=gene-D5F88_RS11380;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=13848,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS11380;partial=true;product=transposase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000095.1 1 17868 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000095.1 RefSeq region 1 17868 . + . ID=NZ_QYTI01000095.1:1..17868;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000095.1 RefSeq pseudogene 1 386 . - . ID=gene-D5F88_RS11385;Name=D5F88_RS11385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11385;old_locus_tag=D5F88_11395;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000095.1 Protein Homology CDS 1 386 . - 0 ID=cds-D5F88_RS11385;Parent=gene-D5F88_RS11385;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646253.1;locus_tag=D5F88_RS11385;partial=true;product=accessory Sec system glycosylation chaperone GtfB;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 379 1887 . - . ID=gene-D5F88_RS11390;Name=gtfA;gbkey=Gene;gene=gtfA;gene_biotype=protein_coding;locus_tag=D5F88_RS11390;old_locus_tag=D5F88_11400 NZ_QYTI01000095.1 Protein Homology CDS 379 1887 . - 0 ID=cds-WP_016481022.1;Parent=gene-D5F88_RS11390;Dbxref=GenBank:WP_016481022.1;Name=WP_016481022.1;Ontology_term=GO:0016757;gbkey=CDS;gene=gtfA;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017771536.1;locus_tag=D5F88_RS11390;product=accessory Sec system glycosyltransferase GtfA;protein_id=WP_016481022.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 1901 4288 . - . ID=gene-D5F88_RS11395;Name=secA2;gbkey=Gene;gene=secA2;gene_biotype=protein_coding;locus_tag=D5F88_RS11395;old_locus_tag=D5F88_11405 NZ_QYTI01000095.1 Protein Homology CDS 1901 4288 . - 0 ID=cds-WP_000123604.1;Parent=gene-D5F88_RS11395;Dbxref=GenBank:WP_000123604.1;Name=WP_000123604.1;Ontology_term=GO:0015031,GO:0015450;gbkey=CDS;gene=secA2;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport|0015031||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017650350.1;locus_tag=D5F88_RS11395;product=accessory Sec system translocase SecA2;protein_id=WP_000123604.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 4275 5267 . - . ID=gene-D5F88_RS11400;Name=asp3;gbkey=Gene;gene=asp3;gene_biotype=protein_coding;locus_tag=D5F88_RS11400;old_locus_tag=D5F88_11410 NZ_QYTI01000095.1 Protein Homology CDS 4275 5267 . - 0 ID=cds-WP_086163416.1;Parent=gene-D5F88_RS11400;Dbxref=GenBank:WP_086163416.1;Name=WP_086163416.1;Ontology_term=GO:0006886;gbkey=CDS;gene=asp3;go_process=intracellular protein transport|0006886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647904.1;locus_tag=D5F88_RS11400;product=accessory Sec system protein Asp3;protein_id=WP_086163416.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 5264 6823 . - . ID=gene-D5F88_RS11405;Name=asp2;gbkey=Gene;gene=asp2;gene_biotype=protein_coding;locus_tag=D5F88_RS11405;old_locus_tag=D5F88_11415 NZ_QYTI01000095.1 Protein Homology CDS 5264 6823 . - 0 ID=cds-WP_015058668.1;Parent=gene-D5F88_RS11405;Dbxref=GenBank:WP_015058668.1;Name=WP_015058668.1;Ontology_term=GO:0006886;gbkey=CDS;gene=asp2;go_process=intracellular protein transport|0006886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015058668.1;locus_tag=D5F88_RS11405;product=accessory Sec system protein Asp2;protein_id=WP_015058668.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 6830 8374 . - . ID=gene-D5F88_RS11410;Name=asp1;gbkey=Gene;gene=asp1;gene_biotype=protein_coding;locus_tag=D5F88_RS11410;old_locus_tag=D5F88_11420 NZ_QYTI01000095.1 Protein Homology CDS 6830 8374 . - 0 ID=cds-WP_016481024.1;Parent=gene-D5F88_RS11410;Dbxref=GenBank:WP_016481024.1;Name=WP_016481024.1;Ontology_term=GO:0006886;gbkey=CDS;gene=asp1;go_process=intracellular protein transport|0006886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016481024.1;locus_tag=D5F88_RS11410;product=accessory Sec system protein Asp1;protein_id=WP_016481024.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 8374 9603 . - . ID=gene-D5F88_RS11415;Name=secY2;gbkey=Gene;gene=secY2;gene_biotype=protein_coding;locus_tag=D5F88_RS11415;old_locus_tag=D5F88_11425 NZ_QYTI01000095.1 Protein Homology CDS 8374 9603 . - 0 ID=cds-WP_124759418.1;Parent=gene-D5F88_RS11415;Dbxref=GenBank:WP_124759418.1;Name=WP_124759418.1;Ontology_term=GO:0006886;gbkey=CDS;gene=secY2;go_process=intracellular protein transport|0006886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000772256.1;locus_tag=D5F88_RS11415;product=accessory Sec system protein translocase subunit SecY2;protein_id=WP_124759418.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 9727 10923 . - . ID=gene-D5F88_RS11420;Name=D5F88_RS11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11420;old_locus_tag=D5F88_11430 NZ_QYTI01000095.1 Protein Homology CDS 9727 10923 . - 0 ID=cds-WP_016481026.1;Parent=gene-D5F88_RS11420;Dbxref=GenBank:WP_016481026.1;Name=WP_016481026.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503048.1;locus_tag=D5F88_RS11420;product=SP_1767 family glycosyltransferase;protein_id=WP_016481026.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 10984 11859 . - . ID=gene-D5F88_RS11425;Name=D5F88_RS11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11425;old_locus_tag=D5F88_11435 NZ_QYTI01000095.1 Protein Homology CDS 10984 11859 . - 0 ID=cds-WP_016481027.1;Parent=gene-D5F88_RS11425;Dbxref=GenBank:WP_016481027.1;Name=WP_016481027.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000130208.1;locus_tag=D5F88_RS11425;product=glycosyltransferase family 2 protein;protein_id=WP_016481027.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 11852 13036 . - . ID=gene-D5F88_RS11430;Name=D5F88_RS11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11430;old_locus_tag=D5F88_11440 NZ_QYTI01000095.1 Protein Homology CDS 11852 13036 . - 0 ID=cds-WP_000795052.1;Parent=gene-D5F88_RS11430;Dbxref=GenBank:WP_000795052.1;Name=WP_000795052.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647328.1;locus_tag=D5F88_RS11430;product=glycosyltransferase;protein_id=WP_000795052.1;transl_table=11 NZ_QYTI01000095.1 RefSeq pseudogene 13026 14267 . - . ID=gene-D5F88_RS11435;Name=D5F88_RS11435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11435;old_locus_tag=D5F88_11445;pseudo=true NZ_QYTI01000095.1 Protein Homology CDS 13026 14267 . - 0 ID=cds-D5F88_RS11435;Parent=gene-D5F88_RS11435;Note=internal stop;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649797.1;locus_tag=D5F88_RS11435;product=glycosyltransferase;pseudo=true;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 14264 15469 . - . ID=gene-D5F88_RS11440;Name=D5F88_RS11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11440;old_locus_tag=D5F88_11450 NZ_QYTI01000095.1 Protein Homology CDS 14264 15469 . - 0 ID=cds-WP_016481030.1;Parent=gene-D5F88_RS11440;Dbxref=GenBank:WP_016481030.1;Name=WP_016481030.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000751410.1;locus_tag=D5F88_RS11440;product=CDP-glycerol--glycerophosphate glycerophosphotransferase;protein_id=WP_016481030.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 15478 16485 . - . ID=gene-D5F88_RS11445;Name=D5F88_RS11445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11445;old_locus_tag=D5F88_11455 NZ_QYTI01000095.1 Protein Homology CDS 15478 16485 . - 0 ID=cds-WP_086163418.1;Parent=gene-D5F88_RS11445;Dbxref=GenBank:WP_086163418.1;Name=WP_086163418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001263779.1;locus_tag=D5F88_RS11445;product=sugar transferase;protein_id=WP_086163418.1;transl_table=11 NZ_QYTI01000095.1 RefSeq gene 16816 17868 . - . ID=gene-D5F88_RS11450;Name=D5F88_RS11450;end_range=17868,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11450;old_locus_tag=D5F88_11460;partial=true NZ_QYTI01000095.1 Protein Homology CDS 16816 17868 . - 0 ID=cds-WP_142997451.1;Parent=gene-D5F88_RS11450;Dbxref=GenBank:WP_142997451.1;Name=WP_142997451.1;Ontology_term=GO:0005576;end_range=17868,.;gbkey=CDS;go_component=extracellular region|0005576||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016503051.1;locus_tag=D5F88_RS11450;partial=true;product=LPXTG cell wall anchor domain-containing protein;protein_id=WP_142997451.1;transl_table=11 ##sequence-region NZ_QYTI01000096.1 1 773 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000096.1 RefSeq region 1 773 . + . ID=NZ_QYTI01000096.1:1..773;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000096.1 RefSeq gene 1 392 . - . ID=gene-D5F88_RS11455;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=D5F88_RS11455;old_locus_tag=D5F88_11465;partial=true;start_range=.,1 NZ_QYTI01000096.1 Protein Homology CDS 1 392 . - 0 ID=cds-WP_185696289.1;Parent=gene-D5F88_RS11455;Dbxref=GenBank:WP_185696289.1;Name=WP_185696289.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005524,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA,ATP binding|0005524||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017770961.1;locus_tag=D5F88_RS11455;partial=true;product=dephospho-CoA kinase;protein_id=WP_185696289.1;start_range=.,1;transl_table=11 NZ_QYTI01000096.1 RefSeq gene 383 773 . - . ID=gene-D5F88_RS11460;Name=D5F88_RS11460;end_range=773,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11460;old_locus_tag=D5F88_11470;partial=true NZ_QYTI01000096.1 Protein Homology CDS 383 773 . - 1 ID=cds-WP_311768275.1;Parent=gene-D5F88_RS11460;Dbxref=GenBank:WP_311768275.1;Name=WP_311768275.1;Ontology_term=GO:0008270;end_range=773,.;gbkey=CDS;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001114601.1;locus_tag=D5F88_RS11460;partial=true;product=zinc finger domain-containing protein;protein_id=WP_311768275.1;transl_table=11 ##sequence-region NZ_QYTI01000097.1 1 971 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000097.1 RefSeq region 1 971 . + . ID=NZ_QYTI01000097.1:1..971;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000097.1 RefSeq gene 44 934 . - . ID=gene-D5F88_RS11465;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=D5F88_RS11465;old_locus_tag=D5F88_11475 NZ_QYTI01000097.1 Protein Homology CDS 44 934 . - 0 ID=cds-WP_001226485.1-2;Parent=gene-D5F88_RS11465;Dbxref=GenBank:WP_001226485.1;Name=WP_001226485.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001226479.1;locus_tag=D5F88_RS11465;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_001226485.1;transl_table=11 ##sequence-region NZ_QYTI01000098.1 1 19630 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000098.1 RefSeq region 1 19630 . + . ID=NZ_QYTI01000098.1:1..19630;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000098.1 RefSeq gene 1 3742 . - . ID=gene-D5F88_RS11470;Name=D5F88_RS11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11470;old_locus_tag=D5F88_11480;partial=true;start_range=.,1 NZ_QYTI01000098.1 Protein Homology CDS 1 3742 . - 0 ID=cds-WP_124773418.1;Parent=gene-D5F88_RS11470;Dbxref=GenBank:WP_124773418.1;Name=WP_124773418.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017649827.1;locus_tag=D5F88_RS11470;partial=true;product=S8 family serine peptidase;protein_id=WP_124773418.1;start_range=.,1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 3776 4117 . - . ID=gene-D5F88_RS11475;Name=D5F88_RS11475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11475;old_locus_tag=D5F88_11485 NZ_QYTI01000098.1 Protein Homology CDS 3776 4117 . - 0 ID=cds-WP_001288728.1;Parent=gene-D5F88_RS11475;Dbxref=GenBank:WP_001288728.1;Name=WP_001288728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001288733.1;locus_tag=D5F88_RS11475;product=hypothetical protein;protein_id=WP_001288728.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 4460 5035 . - . ID=gene-D5F88_RS11480;Name=D5F88_RS11480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11480;old_locus_tag=D5F88_11490 NZ_QYTI01000098.1 Protein Homology CDS 4460 5035 . - 0 ID=cds-WP_016502743.1;Parent=gene-D5F88_RS11480;Dbxref=GenBank:WP_016502743.1;Name=WP_016502743.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001068959.1;locus_tag=D5F88_RS11480;product=hypothetical protein;protein_id=WP_016502743.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 5004 6215 . - . ID=gene-D5F88_RS11485;Name=cylJ;gbkey=Gene;gene=cylJ;gene_biotype=protein_coding;locus_tag=D5F88_RS11485;old_locus_tag=D5F88_11495 NZ_QYTI01000098.1 Protein Homology CDS 5004 6215 . - 0 ID=cds-WP_086163283.1;Parent=gene-D5F88_RS11485;Dbxref=GenBank:WP_086163283.1;Name=WP_086163283.1;gbkey=CDS;gene=cylJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000033001.1;locus_tag=D5F88_RS11485;product=glycosyltransferase CylJ;protein_id=WP_086163283.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 6220 8415 . - . ID=gene-D5F88_RS11490;Name=D5F88_RS11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11490;old_locus_tag=D5F88_11500 NZ_QYTI01000098.1 Protein Homology CDS 6220 8415 . - 0 ID=cds-WP_086163282.1;Parent=gene-D5F88_RS11490;Dbxref=GenBank:WP_086163282.1;Name=WP_086163282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000118219.1;locus_tag=D5F88_RS11490;product=beta-ketoacyl-[acyl-carrier-protein] synthase family protein;protein_id=WP_086163282.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 8412 9365 . - . ID=gene-D5F88_RS11495;Name=D5F88_RS11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11495;old_locus_tag=D5F88_11505 NZ_QYTI01000098.1 Protein Homology CDS 8412 9365 . - 0 ID=cds-WP_016480585.1;Parent=gene-D5F88_RS11495;Dbxref=GenBank:WP_016480585.1;Name=WP_016480585.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017647596.1;locus_tag=D5F88_RS11495;product=aminomethyltransferase family protein;protein_id=WP_016480585.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 9362 11365 . - . ID=gene-D5F88_RS11500;Name=D5F88_RS11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11500;old_locus_tag=D5F88_11510 NZ_QYTI01000098.1 Protein Homology CDS 9362 11365 . - 0 ID=cds-WP_124759476.1;Parent=gene-D5F88_RS11500;Dbxref=GenBank:WP_124759476.1;Name=WP_124759476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017768304.1;locus_tag=D5F88_RS11500;product=cylE protein;protein_id=WP_124759476.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 11362 12240 . - . ID=gene-D5F88_RS11505;Name=D5F88_RS11505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11505;old_locus_tag=D5F88_11515 NZ_QYTI01000098.1 Protein Homology CDS 11362 12240 . - 0 ID=cds-WP_086163281.1;Parent=gene-D5F88_RS11505;Dbxref=GenBank:WP_086163281.1;Name=WP_086163281.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000462408.1;locus_tag=D5F88_RS11505;product=ABC transporter permease;protein_id=WP_086163281.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 12233 13162 . - . ID=gene-D5F88_RS11510;Name=D5F88_RS11510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11510;old_locus_tag=D5F88_11520 NZ_QYTI01000098.1 Protein Homology CDS 12233 13162 . - 0 ID=cds-WP_000403525.1;Parent=gene-D5F88_RS11510;Dbxref=GenBank:WP_000403525.1;Name=WP_000403525.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000403526.1;locus_tag=D5F88_RS11510;product=ABC transporter ATP-binding protein;protein_id=WP_000403525.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 13152 13628 . - . ID=gene-D5F88_RS11515;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=D5F88_RS11515;old_locus_tag=D5F88_11525 NZ_QYTI01000098.1 Protein Homology CDS 13152 13628 . - 0 ID=cds-WP_041165669.1;Parent=gene-D5F88_RS11515;Dbxref=GenBank:WP_041165669.1;Name=WP_041165669.1;gbkey=CDS;gene=fabZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000164166.1;locus_tag=D5F88_RS11515;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_041165669.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 13612 13917 . - . ID=gene-D5F88_RS11520;Name=D5F88_RS11520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11520;old_locus_tag=D5F88_11530 NZ_QYTI01000098.1 Protein Homology CDS 13612 13917 . - 0 ID=cds-WP_000611494.1;Parent=gene-D5F88_RS11520;Dbxref=GenBank:WP_000611494.1;Name=WP_000611494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017646925.1;locus_tag=D5F88_RS11520;product=phosphopantetheine-binding protein;protein_id=WP_000611494.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 13910 14632 . - . ID=gene-D5F88_RS11525;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=D5F88_RS11525;old_locus_tag=D5F88_11535 NZ_QYTI01000098.1 Protein Homology CDS 13910 14632 . - 0 ID=cds-WP_016480581.1;Parent=gene-D5F88_RS11525;Dbxref=GenBank:WP_016480581.1;Name=WP_016480581.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fabG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000861304.1;locus_tag=D5F88_RS11525;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_016480581.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 14629 15477 . - . ID=gene-D5F88_RS11530;Name=D5F88_RS11530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11530;old_locus_tag=D5F88_11540 NZ_QYTI01000098.1 Protein Homology CDS 14629 15477 . - 0 ID=cds-WP_086163280.1;Parent=gene-D5F88_RS11530;Dbxref=GenBank:WP_086163280.1;Name=WP_086163280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000859502.1;locus_tag=D5F88_RS11530;product=CylD;protein_id=WP_086163280.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 15477 15782 . - . ID=gene-D5F88_RS11535;Name=D5F88_RS11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11535;old_locus_tag=D5F88_11545 NZ_QYTI01000098.1 Protein Homology CDS 15477 15782 . - 0 ID=cds-WP_016480579.1;Parent=gene-D5F88_RS11535;Dbxref=GenBank:WP_016480579.1;Name=WP_016480579.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000533774.1;locus_tag=D5F88_RS11535;product=hypothetical protein;protein_id=WP_016480579.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 16191 17321 . - . ID=gene-D5F88_RS11540;Name=D5F88_RS11540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11540;old_locus_tag=D5F88_11550 NZ_QYTI01000098.1 Protein Homology CDS 16191 17321 . - 0 ID=cds-WP_086163279.1;Parent=gene-D5F88_RS11540;Dbxref=GenBank:WP_086163279.1;Name=WP_086163279.1;Ontology_term=GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000700848.1;locus_tag=D5F88_RS11540;product=sensor histidine kinase;protein_id=WP_086163279.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 17311 17979 . - . ID=gene-D5F88_RS11545;Name=D5F88_RS11545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11545;old_locus_tag=D5F88_11555 NZ_QYTI01000098.1 Protein Homology CDS 17311 17979 . - 0 ID=cds-WP_016480576.1;Parent=gene-D5F88_RS11545;Dbxref=GenBank:WP_016480576.1;Name=WP_016480576.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016480576.1;locus_tag=D5F88_RS11545;product=response regulator transcription factor;protein_id=WP_016480576.1;transl_table=11 NZ_QYTI01000098.1 RefSeq gene 18197 18895 . - . ID=gene-D5F88_RS11550;Name=D5F88_RS11550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11550;old_locus_tag=D5F88_11560 NZ_QYTI01000098.1 Protein Homology CDS 18197 18895 . - 0 ID=cds-WP_041165668.1;Parent=gene-D5F88_RS11550;Dbxref=GenBank:WP_041165668.1;Name=WP_041165668.1;Ontology_term=GO:0008253;gbkey=CDS;go_function=5'-nucleotidase activity|0008253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000291485.1;locus_tag=D5F88_RS11550;product=YjjG family noncanonical pyrimidine nucleotidase;protein_id=WP_041165668.1;transl_table=11 NZ_QYTI01000098.1 RefSeq pseudogene 18969 19181 . - . ID=gene-D5F88_RS11555;Name=D5F88_RS11555;end_range=19181,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11555;old_locus_tag=D5F88_11565;partial=true;pseudo=true NZ_QYTI01000098.1 Protein Homology CDS 18969 19181 . - 0 ID=cds-D5F88_RS11555;Parent=gene-D5F88_RS11555;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0047429;end_range=19181,.;gbkey=CDS;go_function=nucleoside triphosphate diphosphatase activity|0047429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000689173.1;locus_tag=D5F88_RS11555;partial=true;product=Maf family protein;pseudo=true;transl_table=11 NZ_QYTI01000098.1 RefSeq pseudogene 19260 19630 . + . ID=gene-D5F88_RS11560;Name=D5F88_RS11560;end_range=19630,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11560;old_locus_tag=D5F88_11570;partial=true;pseudo=true NZ_QYTI01000098.1 Protein Homology CDS 19260 19630 . + 0 ID=cds-D5F88_RS11560;Parent=gene-D5F88_RS11560;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=19630,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612023.1;locus_tag=D5F88_RS11560;partial=true;product=transposase;pseudo=true;transl_table=11 ##sequence-region NZ_QYTI01000099.1 1 391 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1311 NZ_QYTI01000099.1 RefSeq region 1 391 . + . ID=NZ_QYTI01000099.1:1..391;Dbxref=taxon:1311;collected-by=ILRI;collection-date=1999;country=Kenya;gbkey=Src;genome=genomic;genotype=ST612;isolation-source=Pus;mol_type=genomic DNA;nat-host=Camelus dromedarius;serotype=Ia;strain=ILRI068 NZ_QYTI01000099.1 RefSeq pseudogene 1 140 . + . ID=gene-D5F88_RS11565;Name=D5F88_RS11565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=D5F88_RS11565;old_locus_tag=D5F88_11575;partial=true;pseudo=true;start_range=.,1 NZ_QYTI01000099.1 Protein Homology CDS 1 140 . + 2 ID=cds-D5F88_RS11565;Parent=gene-D5F88_RS11565;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015631960.1;locus_tag=D5F88_RS11565;partial=true;product=acyl-ACP thioesterase domain-containing protein;pseudo=true;start_range=.,1;transl_table=11 NZ_QYTI01000099.1 RefSeq gene 141 391 . + . ID=gene-D5F88_RS11570;Name=D5F88_RS11570;end_range=391,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=D5F88_RS11570;old_locus_tag=D5F88_11580;partial=true NZ_QYTI01000099.1 Protein Homology CDS 141 391 . + 0 ID=cds-WP_185696290.1;Parent=gene-D5F88_RS11570;Dbxref=GenBank:WP_185696290.1;Name=WP_185696290.1;end_range=391,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000323542.1;locus_tag=D5F88_RS11570;partial=true;product=HAD hydrolase family protein;protein_id=WP_185696290.1;transl_table=11 ###