Cellular & Molecular Imaging

Light/fluorescence microscopy of cells & tissues, and electron/cryo-EM imaging of macromolecular structures — a metadata catalog with a durable link back to the source archive, not a hosted image gallery. These are primary research datasets (often multi-GB to multi-TB), so this platform never downloads or stores the underlying imaging data itself. Datasets already in either source archive are ingested via accession paste/CSV at /mirroring by a Continental Admin (no automated harvesting — neither source archive supports geography-filterable search); a dataset not yet in either archive can instead be submitted directly below by any node operator, for Continental Admin review. Either way, whoever submits an accession or a self-submitted dataset is the one asserting African origin — this platform does not verify it.

curl "https://<hub-domain>/api/v1/cellular-imaging"

Optical pooled screens in human cells

IDR:1506 · Feldman D · Homo sapiens

in situ sequencing

Fluorescence microscopy

View on source archive ↗

publiccc_byAFDSI-CELL-1185

Optical pooled screens in human cells

IDR:1505 · Feldman D · Homo sapiens

in situ sequencing

Fluorescence microscopy

View on source archive ↗

publiccc_byAFDSI-CELL-1186

Optical pooled screens in human cells

IDR:1507 · Feldman D · Homo sapiens

in situ sequencing

Fluorescence microscopy

View on source archive ↗

publiccc_byAFDSI-CELL-1187

α-synuclein-driven cell susceptibility in Parkinson’s Disease

IDR:3303 · Breiter JC · Homo sapiens

protein localization

Light microscopy · DOI: 10.17867/10000210

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publiccc_byAFDSI-CELL-1188

Optical pooled screens in human cells

IDR:1502 · Feldman D · Homo sapiens

in situ sequencing

Fluorescence microscopy

View on source archive ↗

publiccc_byAFDSI-CELL-1189

RASP: Optimal single puncta detection in complex cellular backgrounds

IDR:2852 · Fu B · Homo sapiens

protein localization

Light microscopy · DOI: 10.17867/10000195

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publiccc_byAFDSI-CELL-1190

Striated fiber assemblins in Plasmodium berghei

BioImage Archive:S-BIAD3111 · (University Hospital Heidelberg) · Plasmodium gaboni

Plasmodium oocysts within the mosquito midgut epithelium produce sporozoites, the stage which is infective for the vertebrate host. The formation process of these sporozoites is termed sporogony and is still poorly understood. During sporogony a 30 nm thick longitudinal fiber, the rootlet fiber, connects the centriolar plaque of the nucleus to the apical polar ring at the tip of the forming sporozoite. It is hypothesized to play a role in trafficking secretory organelles and nuclear uptake into the newly forming sporozoite bud. A similar fiber was previously observed in Toxoplasma gondii which is formed by two striated fiber assemblins (SFAs). Here we characterize the two SFA homologs in P. berghei (PbSFA1/PBANKA_1227000, PbSFA2/PBANKA_1012000) via fluorescent tagging, confirming a fiber-like localization at the tips of nascent sporozoites in oocysts. Knockout of either SFA gene lead to significant reduction in oocyst numbers and a complete failure to produce any sporozoites. Upon investigation by electron microscopy and electron tomography, initiation of sporozoite formation could be observed but the rootlet fiber was absent in sporozoite buds. Strikingly, nuclear uptake was strongly affected, as no nuclei could be observed in elongated sporozoite buds. Further, elongated sporozoite buds failed to bud off, ultimately creating a network of incompletely formed ‘sporozoites’. These findings emphasize the role of the rootlet fiber in nuclear uptake und organization of sporozoite formation, making them essential for the progression through the mosquito.

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publicrestrictedAFDSI-CELL-1109

Endogenous and environmentally modulated leaf shape plasticity in Boquila trifoliolata

BioImage Archive:S-BIAD4056 · (Charles University) · Olea europaea subsp. laperrinei

This is a complete leaf image dataset used for quantitative characterization of leaf shape variability in solitary Boquila trifoliolata plants and in plants grown on defined live or decoy hosts. Reference: Cvrčková F, Šonka J, Bezvoda R, Krtková J, Konrádová H, Žárský: V: Endogenous and environmentally modulated leaf shape plasticity in Boquila trifoliolata: how good is the evidence for mimicry? Manuscript in preparation/to be submitted to biorXiv.

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publicrestrictedAFDSI-CELL-1191

Plasmodium falciparum impairs Ang-1 secretion by pericytes in a 3D brain microvessel model

BioImage Archive:S-BIAD2217 · (European Molecular Biology Laboratory) · Plasmodium gaboni

All images used to generate the figures of this manuscript

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publicrestrictedAFDSI-CELL-1110

Chromenylium Green, the next generation Indocyanine Green with extended circulatory half-life for high-resolution vascular imaging

BioImage Archive:S-BIAD3372 · (UCLA - University of California, Los Angeles) · Mansonella sp. 'DEUX'

Indocyanine Green (ICG) has seen widespread use in the operating room as a fluorescent vascular imaging agent. However, its rapid vascular clearance often necessitates redosing, resulting in procedural delays, greater background, and potential adverse physiological effects. Here, we present Chromenylium Green (ChromG), a novel fluorescent tracer exhibiting excellent visualization of vasculature in mice with greater contrast and seven times the vascular half-life relative to ICG. ChromG allows for high-resolution imaging of vasculature at greater depths, enabling whole-body 3D vascular reconstruction with up to 74% connectivity. As a proof of concept of ChromG’s utility in disease contexts, we demonstrate the ability to visualize saphenous artery stenoses above the clinically accepted contrast limit for eight times longer than ICG. With its excellent biocompatibility profile and compatibility with current clinical imaging technologies, ChromG is a promising fluorescent probe for prolonged, high-resolution intraoperative vascular imaging.

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publicrestrictedAFDSI-CELL-1229

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