Genomes

Every genome sequence record across the federated catalog. Individual genomes are also reachable from their parent species (/species/[id]lists a species' genome records and embeds its JBrowse2 browser) — this page is the browsable index of all of them.

curl "https://<hub-domain>/api/v1/catalog/sequences"

Bulk / machine-readable: Download Darwin Core Archive (all public genomes) ↓ — the standard format GBIF and other biodiversity data portals harvest. See also the DCAT catalog feed covering every data type this Hub holds.

curl "https://<hub-domain>/api/v1/export/darwin-core.zip"

Helichrysum odoratissimum

taxon 112363

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-21

GoaT: Scaffold assembly · 2.44 Gb

Xenopus laevis

African clawed frogtaxon 8355

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-1

GoaT: Chromosome assembly · 2.74 Gb

Haplochromis burtoni

Burton's mouthbroodertaxon 8153

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-2

GoaT: Scaffold assembly · 0.83 Gb

Sorghum bicolor

sorghumtaxon 4558

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-4

GoaT: Scaffold assembly · 0.67 Gb

Heterocephalus glaber

naked mole-rattaxon 10181

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-3

GoaT: Scaffold assembly · 2.56 Gb

Loxodonta africana

African savanna elephanttaxon 9785

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-8

GoaT: Scaffold assembly · 3.23 Gb

Coffea eugenioides

taxon 49369

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-5

GoaT: Chromosome assembly · 0.64 Gb

Coffea arabica

coffeetaxon 13443

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-6

GoaT: Chromosome assembly · 1.32 Gb

Gambeya albida

taxon 1220070

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-10

GoaT: Chromosome assembly · 0.79 Gb

Panthera leo

liontaxon 9689

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-13

GoaT: Chromosome assembly · 2.30 Gb

Coffea arabica

coffeetaxon 13443

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-9

GoaT: Chromosome assembly · 1.32 Gb

Gorilla gorilla gorilla

western lowland gorillataxon 9595

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-14

GoaT: Chromosome assembly · 3.35 Gb

Oreochromis niloticus

Nile tilapiataxon 8128

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-7

GoaT: Chromosome assembly · 0.99 Gb

Panthera leo

liontaxon 9689

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-15

GoaT: Chromosome assembly · 2.30 Gb

Acinonyx jubatus

cheetahtaxon 32536

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-16

GoaT: Chromosome assembly · 2.38 Gb

Acinonyx jubatus

cheetahtaxon 32536

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-17

GoaT: Chromosome assembly · 2.38 Gb

Eragrostis tef

taxon 110835

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-12

GoaT: Scaffold assembly · 0.61 Gb

Ceratotherium simum simum

southern white rhinocerostaxon 73337

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-18

GoaT: Chromosome assembly · 2.87 Gb

Giraffa tippelskirchi

taxon 439328

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-19

GoaT: Complete Genome assembly · 2.58 Gb

Giraffa tippelskirchi

taxon 439328

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-20

GoaT: Complete Genome assembly · 2.58 Gb

Rhinotyphlops lalandei

taxon 759953

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-25

GoaT: Chromosome assembly · 1.71 Gb

Rhinotyphlops lalandei

taxon 759953

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-26

GoaT: Chromosome assembly · 1.71 Gb

Struthio camelus

African ostrichtaxon 8801

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-22

GoaT: Chromosome assembly · 1.38 Gb

Oreochromis mossambicus

Mozambique tilapiataxon 8127

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-24

GoaT: Scaffold assembly · 1.09 Gb

Vigna unguiculata

cowpeataxon 3917

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-11

GoaT: Chromosome assembly · 0.59 Gb

Crocodylus niloticus

Nile crocodiletaxon 8501

genome (fasta) — origin: hub

publiccc0not yet downloadedAFDSI-SEQ-23

GoaT: Chromosome assembly · 2.34 Gb

Adansonia digitata

taxon 69109

genome (fasta) — origin: hub

publiccc0AFDSI-SEQ-27

GoaT: Scaffold assembly · 0.69 Gb