Proteomics

Acanthamoeba castellanii

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Diversity and evolution of chromatin regulatory states across eukaryotes (PXD069944) ↗AFDSI-PROJREF-70Copy ID

PRIDE: Proteomic characterization of Cedratvirus particles (PXD069162) ↗AFDSI-PROJREF-71Copy ID

PRIDE: Elucidating the interaction network of mimivirus capsid proteins (PXD068780) ↗AFDSI-PROJREF-72Copy ID

PRIDE: C. jejuni interaction with A. castellanii mitochondria (PXD065850) ↗AFDSI-PROJREF-73Copy ID

PRIDE: Integrative structural Interactomics reveals protein organization and structure in a giant virus (PXD064933) ↗AFDSI-PROJREF-74Copy ID

PRIDE: Proteomic Characterization of Naiavirus (PXD063493) ↗AFDSI-PROJREF-75Copy ID

PRIDE: MS-based proteomic characterization of pacmanvirus lostcity virions (PXD054858) ↗AFDSI-PROJREF-76Copy ID

PRIDE: MS-based identification of proteins localized in viral factory of mimivirus (PXD054803) ↗AFDSI-PROJREF-77Copy ID

PRIDE: Molecular mechanisms of Acanthamoeba castellanii response to different sources of oxidative stress. (PXD052473) ↗AFDSI-PROJREF-78Copy ID

PRIDE: MS-based proteomic characterization of Megavirus chilensis virions prepared from cells coinfected or not with Zamilon vitis (PXD052049) ↗AFDSI-PROJREF-79Copy ID

Amaranthus hypochondriacus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Amaranthus hypochondriacus seeds as a rich source of cysteine rich bioactive peptides (PXD025965) ↗AFDSI-PROJREF-80Copy ID

Anopheles gambiae

PaxDb — real per-protein abundance

Q7PCX0_ANOGA (7165.Q7PCX0) — abundance 37725AFDSI-PROTEOMICS-51Copy ID

Q7Q3K7_ANOGA (7165.Q7Q3K7) — abundance 21836AFDSI-PROTEOMICS-52Copy ID

F5HKJ1_ANOGA (7165.F5HKJ1) — abundance 21264AFDSI-PROTEOMICS-53Copy ID

Act5C (7165.P84185) — abundance 15596AFDSI-PROTEOMICS-54Copy ID

Q7PV03_ANOGA (7165.Q7PV03) — abundance 14263AFDSI-PROTEOMICS-55Copy ID

Q7PD39_ANOGA (7165.Q7PD39) — abundance 13811AFDSI-PROTEOMICS-56Copy ID

Q7QLH6_ANOGA (7165.Q7QLH6) — abundance 13811AFDSI-PROTEOMICS-57Copy ID

Q7Q7K6_ANOGA (7165.Q7Q7K6) — abundance 13485AFDSI-PROTEOMICS-58Copy ID

A8B1J8_ANOGA (7165.A8B1J8) — abundance 12985AFDSI-PROTEOMICS-59Copy ID

H2B_ANOGA_d (7165.Q27442) — abundance 12957AFDSI-PROTEOMICS-60Copy ID

Q7Q7K4_ANOGA (7165.Q7Q7K4) — abundance 12068AFDSI-PROTEOMICS-61Copy ID

A7USV9_ANOGA (7165.A7USV9) — abundance 12051AFDSI-PROTEOMICS-62Copy ID

A7UTK5_ANOGA (7165.A7UTK5) — abundance 11448AFDSI-PROTEOMICS-63Copy ID

Q7PUQ8_ANOGA (7165.Q7PUQ8) — abundance 11220AFDSI-PROTEOMICS-64Copy ID

Q7Q7K5_ANOGA (7165.Q7Q7K5) — abundance 10958AFDSI-PROTEOMICS-65Copy ID

Q7PCS9_ANOGA (7165.Q7PCS9) — abundance 10860AFDSI-PROTEOMICS-66Copy ID

Q7PGI9_ANOGA (7165.Q7PGI9) — abundance 9939AFDSI-PROTEOMICS-67Copy ID

Q7PIQ5_ANOGA (7165.Q7PIQ5) — abundance 9270AFDSI-PROTEOMICS-68Copy ID

A0NFA5_ANOGA (7165.A0NFA5) — abundance 8532AFDSI-PROTEOMICS-69Copy ID

Q7Q2C5_ANOGA (7165.Q7Q2C5) — abundance 8384AFDSI-PROTEOMICS-70Copy ID

Q7PJV2_ANOGA (7165.Q7PJV2) — abundance 7818AFDSI-PROTEOMICS-71Copy ID

Q7PE12_ANOGA (7165.Q7PE12) — abundance 7745AFDSI-PROTEOMICS-72Copy ID

F5HLM0_ANOGA (7165.F5HLM0) — abundance 7631AFDSI-PROTEOMICS-73Copy ID

D1.1 (7165.Q7PXZ8) — abundance 7629AFDSI-PROTEOMICS-74Copy ID

SERCA (7165.Q7PPA5) — abundance 7194AFDSI-PROTEOMICS-75Copy ID

A0NBC2_ANOGA (7165.A0NBC2) — abundance 6186AFDSI-PROTEOMICS-76Copy ID

Q7PR02_ANOGA (7165.Q7PR02) — abundance 5987AFDSI-PROTEOMICS-77Copy ID

Vha68-2 (7165.Q5TTG1) — abundance 5908AFDSI-PROTEOMICS-78Copy ID

ADT2_ANOGA (7165.Q7PQV7) — abundance 5759AFDSI-PROTEOMICS-79Copy ID

ADT1_ANOGA (7165.Q27238) — abundance 5606AFDSI-PROTEOMICS-80Copy ID

F5HME4_ANOGA (7165.F5HME4) — abundance 5597AFDSI-PROTEOMICS-81Copy ID

Q380N3_ANOGA (7165.Q380N3) — abundance 5390AFDSI-PROTEOMICS-82Copy ID

Q7PZV3_ANOGA (7165.Q7PZV3) — abundance 5340AFDSI-PROTEOMICS-83Copy ID

Q7PKD7_ANOGA (7165.Q7PKD7) — abundance 5131AFDSI-PROTEOMICS-84Copy ID

30E5.12 (7165.Q8T5H8) — abundance 5088AFDSI-PROTEOMICS-85Copy ID

Q7PT29_ANOGA (7165.Q7PT29) — abundance 5063AFDSI-PROTEOMICS-86Copy ID

Q7PUE2_ANOGA (7165.Q7PUE2) — abundance 5037AFDSI-PROTEOMICS-87Copy ID

F5HJ34_ANOGA (7165.F5HJ34) — abundance 4880AFDSI-PROTEOMICS-88Copy ID

VDAC (7165.Q8T4K0) — abundance 4742AFDSI-PROTEOMICS-89Copy ID

Q7PSI5_ANOGA (7165.Q7PSI5) — abundance 4598AFDSI-PROTEOMICS-90Copy ID

Q7QNF3_ANOGA (7165.Q7QNF3) — abundance 4571AFDSI-PROTEOMICS-91Copy ID

Q7PHI8_ANOGA (7165.Q7PHI8) — abundance 4552AFDSI-PROTEOMICS-92Copy ID

Q7PX39_ANOGA (7165.Q7PX39) — abundance 4507AFDSI-PROTEOMICS-93Copy ID

F5HL97_ANOGA (7165.F5HL97) — abundance 4417AFDSI-PROTEOMICS-94Copy ID

A7UU86_ANOGA (7165.A7UU86) — abundance 4366AFDSI-PROTEOMICS-95Copy ID

Q7PS16_ANOGA (7165.Q7PS16) — abundance 4228AFDSI-PROTEOMICS-96Copy ID

F5HKA3_ANOGA (7165.F5HKA3) — abundance 4181AFDSI-PROTEOMICS-97Copy ID

Q7Q2C4_ANOGA (7165.Q7Q2C4) — abundance 4025AFDSI-PROTEOMICS-98Copy ID

Q7PD33_ANOGA (7165.Q7PD33) — abundance 4025AFDSI-PROTEOMICS-99Copy ID

Q7Q2C6_ANOGA (7165.Q7Q2C6) — abundance 3985AFDSI-PROTEOMICS-100Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Baculovirus-mediated expression of a maleness gene in female Anopheles gambiae cells (PXD070102) ↗AFDSI-PROJREF-81Copy ID

PRIDE: Predictive chemoproteomics and functional validation reveal Coeae6g mediated insecticide cross-resistance in the malaria vector Anopheles gambiae (PXD060698) ↗AFDSI-PROJREF-82Copy ID

PRIDE: High-Resolution Proteomics Unveils Salivary Gland Disruption and Saliva-Hemolymph Protein Exchange in Plasmodium-Infected Mosquitoes (PXD057628) ↗AFDSI-PROJREF-83Copy ID

PRIDE: High-Resolution Proteomics Unveils Salivary Gland Disruption and Saliva-Hemolymph Protein Exchange in Plasmodium-Infected Mosquitoes (PXD057585) ↗AFDSI-PROJREF-84Copy ID

PRIDE: High-Resolution Proteomics Unveils Salivary Gland Disruption and Saliva-Hemolymph Protein Exchange in Plasmodium-Infected Mosquitoes (PXD057587) ↗AFDSI-PROJREF-85Copy ID

PRIDE: Mosquito salivary apyrase regulates blood meal hemostasis and drives malaria parasite transmission (PXD052155) ↗AFDSI-PROJREF-86Copy ID

PRIDE: The sex-specific factor SOA establishes X chromosome dosage compensation in Anopheles mosquitos (PXD042353) ↗AFDSI-PROJREF-87Copy ID

PRIDE: A male-specific steroid hormone controls female reproductive biology in the malaria mosquito (PXD032157) ↗AFDSI-PROJREF-88Copy ID

PRIDE: Proteomic investigation on Anopheles gambiae in Burkina Faso related to insecticide pressures from different climatic regions (PXD016300) ↗AFDSI-PROJREF-89Copy ID

PRIDE: Analysis of Plasmodium sporozoites collected from mosquito saliva (PXD010121) ↗AFDSI-PROJREF-90Copy ID

Arabidopsis thaliana

PaxDb — real per-protein abundance

rbcL (3702.O03042) — abundance 33351AFDSI-PROTEOMICS-101Copy ID

psbB (3702.P56777) — abundance 11353AFDSI-PROTEOMICS-102Copy ID

RCA (3702.P10896) — abundance 10653AFDSI-PROTEOMICS-103Copy ID

psbD (3702.P56761) — abundance 9199AFDSI-PROTEOMICS-104Copy ID

F24B9.25 (3702.P59259) — abundance 6693AFDSI-PROTEOMICS-105Copy ID

atpB (3702.P19366) — abundance 5301AFDSI-PROTEOMICS-106Copy ID

psbA (3702.P83755) — abundance 5286AFDSI-PROTEOMICS-107Copy ID

psbC (3702.P56778) — abundance 5120AFDSI-PROTEOMICS-108Copy ID

DRT112 (3702.P42699) — abundance 4925AFDSI-PROTEOMICS-109Copy ID

APX1 (3702.Q05431) — abundance 4793AFDSI-PROTEOMICS-110Copy ID

PSBP1 (3702.Q42029) — abundance 4605AFDSI-PROTEOMICS-111Copy ID

FBA2 (3702.Q944G9) — abundance 4352AFDSI-PROTEOMICS-112Copy ID

PCAP1 (3702.Q96262) — abundance 4204AFDSI-PROTEOMICS-113Copy ID

RBCS-1A (3702.P10795) — abundance 4141AFDSI-PROTEOMICS-114Copy ID

atpA (3702.P56757) — abundance 4108AFDSI-PROTEOMICS-115Copy ID

GAPC2 (3702.Q9FX54) — abundance 3594AFDSI-PROTEOMICS-116Copy ID

TKL-1 (3702.Q8RWV0) — abundance 3361AFDSI-PROTEOMICS-117Copy ID

BGLU23 (3702.Q9SR37) — abundance 3228AFDSI-PROTEOMICS-118Copy ID

PGK1 (3702.Q9LD57) — abundance 3134AFDSI-PROTEOMICS-119Copy ID

RPL40B (3702.Q42202) — abundance 3069AFDSI-PROTEOMICS-120Copy ID

RPL40A (3702.B9DHA6) — abundance 3069AFDSI-PROTEOMICS-121Copy ID

GLN2 (3702.Q43127) — abundance 2974AFDSI-PROTEOMICS-122Copy ID

GAPC1 (3702.P25858) — abundance 2898AFDSI-PROTEOMICS-123Copy ID

A1 (3702.P0DH99) — abundance 2822AFDSI-PROTEOMICS-124Copy ID

PBP1 (3702.O04314) — abundance 2763AFDSI-PROTEOMICS-125Copy ID

LHCB5 (3702.Q9XF89) — abundance 2715AFDSI-PROTEOMICS-126Copy ID

F9D16.140 (3702.Q9SUR0) — abundance 2690AFDSI-PROTEOMICS-127Copy ID

RPS27AB (3702.P59232) — abundance 2664AFDSI-PROTEOMICS-128Copy ID

RPS27AC (3702.P59233) — abundance 2662AFDSI-PROTEOMICS-129Copy ID

RPS27AA (3702.P59271) — abundance 2619AFDSI-PROTEOMICS-130Copy ID

RPL13B (3702.P41127) — abundance 2602AFDSI-PROTEOMICS-131Copy ID

MS1 (3702.O50008) — abundance 2544AFDSI-PROTEOMICS-132Copy ID

LHCA3 (3702.Q9SY97) — abundance 2486AFDSI-PROTEOMICS-133Copy ID

RPP2B-2 (3702.Q9SLF7) — abundance 2252AFDSI-PROTEOMICS-134Copy ID

PSBQ1 (3702.Q9XFT3) — abundance 2232AFDSI-PROTEOMICS-135Copy ID

SAHH1 (3702.O23255) — abundance 2208AFDSI-PROTEOMICS-136Copy ID

RBCS-3B (3702.P10798) — abundance 2170AFDSI-PROTEOMICS-137Copy ID

BCA2 (3702.P42737) — abundance 2162AFDSI-PROTEOMICS-138Copy ID

RUB1 (3702.Q9SHE7) — abundance 2087AFDSI-PROTEOMICS-139Copy ID

RUB2 (3702.Q8RUC6) — abundance 2060AFDSI-PROTEOMICS-140Copy ID

RBCS-2B (3702.P10797) — abundance 2052AFDSI-PROTEOMICS-141Copy ID

RPS18A (3702.P34788) — abundance 2050AFDSI-PROTEOMICS-142Copy ID

EEF-1Bb1 (3702.P48006) — abundance 2004AFDSI-PROTEOMICS-143Copy ID

BCA1 (3702.P27140) — abundance 1993AFDSI-PROTEOMICS-144Copy ID

CTIMC (3702.P48491) — abundance 1983AFDSI-PROTEOMICS-145Copy ID

ENO2 (3702.P25696) — abundance 1936AFDSI-PROTEOMICS-146Copy ID

RPP1A (3702.Q8LCW9) — abundance 1928AFDSI-PROTEOMICS-147Copy ID

CAT3 (3702.Q42547) — abundance 1887AFDSI-PROTEOMICS-148Copy ID

RBCS-1B (3702.P10796) — abundance 1869AFDSI-PROTEOMICS-149Copy ID

LFNR1 (3702.Q9FKW6) — abundance 1857AFDSI-PROTEOMICS-150Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Phage depolymerase modulates virulence and biofilm in hypervirulent Klebsiella pneumoniae by CPS-mediated suppression of type 3 fimbriae (PXD080233) ↗AFDSI-PROJREF-91Copy ID

PRIDE: A STRUBBELIG-NHL3 cell surface receptor complex mediates the response to cellulose deficiency in Arabidopsis (PXD079577) ↗AFDSI-PROJREF-92Copy ID

PRIDE: Spatial Proteomics in Arabidopsis Nuclei Sheds Light on Gene Expression Regulators in Plant Basal Immunity (PXD078376) ↗AFDSI-PROJREF-93Copy ID

PRIDE: Mapping Architecture of Protein complexes in Arabidopsis using XL-MS (Histone H2B turboID) (PXD078284) ↗AFDSI-PROJREF-94Copy ID

PRIDE: Identification of DELLA proximitome by TurboID labeling (PXD078134) ↗AFDSI-PROJREF-95Copy ID

PRIDE: LC-MSMS analysis of crocus sativus at different floral developmental stage. (PXD076029) ↗AFDSI-PROJREF-96Copy ID

PRIDE: Sucrose-Activated TOR and phyA Signaling Alleviates Shade-Mediated Inhibition of Leaf Development in Arabidopsis (PXD075951) ↗AFDSI-PROJREF-97Copy ID

PRIDE: A versatile inducible plant model system for dissecting p53 function and discovering novel interaction networks (PXD075858) ↗AFDSI-PROJREF-98Copy ID

PRIDE: Shedding light on plant proteolysis: genetically encoded fluorescent sensors as tools for profiling protease activities (PXD075809) ↗AFDSI-PROJREF-99Copy ID

PRIDE: Predicting plant response to combined stresses (CO2 and Heat) (PXD075212) ↗AFDSI-PROJREF-100Copy ID

PRIDE: The NPH3-domain protein NRL5 has extensive connections to intracellular trafficking and other NRLs (PXD083355) ↗AFDSI-PROJREF-471Copy ID

PRIDE: CDK8 phosphorylation of DELLA limits Mediator recruitment in gibberellin signaling (PXD077697) ↗AFDSI-PROJREF-478Copy ID

PRIDE: Genetic code expansion enables plant-directed control of bacterial activity (PXD084218) ↗AFDSI-PROJREF-489Copy ID

PRIDE: Hierarchical regulation of oxygen-sensing through coupled transducers in Arabidopsis thaliana (PXD083373) ↗AFDSI-PROJREF-499Copy ID

Babesia microti

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Ribosomal architecture and rRNA modification landscape in the tick-borne parasite Babesia divergens (PXD069329) ↗AFDSI-PROJREF-333Copy ID

PRIDE: Title: Temporal dynamic interplay of mouse proteome during protozoan Babesia microti infection alone or co-infection with Borrelia burgdorferi (PXD054200) ↗AFDSI-PROJREF-334Copy ID

Bemisia tabaci

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Symbiont proteome data of whiteflies (PXD038323) ↗AFDSI-PROJREF-101Copy ID

PRIDE: Proteomics analysis of Bemisia tabaci (MED) saliva (PXD033180) ↗AFDSI-PROJREF-102Copy ID

PRIDE: Comprehensive protein profiling reveals pleiotropic effects of Bemisia tabaci and Tomato Mottle Virus infection on local and systemic tomato leaves (PXD019197) ↗AFDSI-PROJREF-103Copy ID

PRIDE: Proteomic analysis of various Bemisia tabaci population with variable TYLCV transmission abilities (PXD016964) ↗AFDSI-PROJREF-104Copy ID

PRIDE: Identification of Saliva Proteins of the Whitefly Bemisia tabaci (PXD016581) ↗AFDSI-PROJREF-105Copy ID

Bos indicus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Milk somatic cell proteomic profiling identifies potential biomarkers of host immune-related proteins regulating Bovine mastitis in tropical India's Sahiwal cows (PXD045487) ↗AFDSI-PROJREF-106Copy ID

PRIDE: Exploring molecular dynamics indicators associated with reproductive performance of Bos indicus cattle in plasma samples through data-independent acquisition mass spectrometry (PXD034103) ↗AFDSI-PROJREF-107Copy ID

PRIDE: Quantitative proteomics profiling of spermatozoa and seminal plasma reveals proteins associated with semen quality in Bos indicus bulls (PXD034096) ↗AFDSI-PROJREF-108Copy ID

PRIDE: Comprehensive mapping of the bull sperm surface proteome (PXD000007) ↗AFDSI-PROJREF-109Copy ID

PRIDE: Mapping proteome of seminal plasma and spermatozoa of Indian Indigenous Malnad Gidda (Bos indicus) cattle (PXD014172) ↗AFDSI-PROJREF-110Copy ID

PRIDE: Bovine pituitary LC-MS/MS (PXD009619) ↗AFDSI-PROJREF-111Copy ID

PRIDE: Bovine hypothalamic LC-MS/MS (PXD009620) ↗AFDSI-PROJREF-112Copy ID

PRIDE: Bovine adipose tissue LC-MS/MS (PXD009452) ↗AFDSI-PROJREF-113Copy ID

PRIDE: Bovine Longissimus thoracis muscle HDMSE with differents ultimate pH (PXD009320) ↗AFDSI-PROJREF-114Copy ID

PRIDE: A Comparative Proteomic Analysis of Whey Protein from Early, Mid and Late Lactation Stages of Indian Indigenous Breed, MalnadGidda (Bosindicus) (PXD007655) ↗AFDSI-PROJREF-115Copy ID

Bos taurus

PaxDb — real per-protein abundance

PAEP (9913.ENSBTAP00000062602) — abundance 78454AFDSI-PROTEOMICS-251Copy ID

CSN1S1 (9913.ENSBTAP00000010119) — abundance 44649AFDSI-PROTEOMICS-252Copy ID

ALB (9913.ENSBTAP00000022763) — abundance 42727AFDSI-PROTEOMICS-253Copy ID

CSN2 (9913.ENSBTAP00000003409) — abundance 39438AFDSI-PROTEOMICS-254Copy ID

LOC780933 (9913.ENSBTAP00000004737) — abundance 23645AFDSI-PROTEOMICS-255Copy ID

PRSS1 (9913.ENSBTAP00000033392) — abundance 23645AFDSI-PROTEOMICS-256Copy ID

HBB (9913.ENSBTAP00000050256) — abundance 18100AFDSI-PROTEOMICS-257Copy ID

CSN3 (9913.ENSBTAP00000028685) — abundance 16244AFDSI-PROTEOMICS-258Copy ID

HBA (9913.ENSBTAP00000037374) — abundance 16021AFDSI-PROTEOMICS-259Copy ID

HBA1 (9913.ENSBTAP00000022034) — abundance 14318AFDSI-PROTEOMICS-260Copy ID

TMSB4 (9913.ENSBTAP00000065581) — abundance 11493AFDSI-PROTEOMICS-261Copy ID

ACTG1 (9913.ENSBTAP00000008132) — abundance 8992AFDSI-PROTEOMICS-262Copy ID

ACTB (9913.ENSBTAP00000036739) — abundance 8959AFDSI-PROTEOMICS-263Copy ID

ENSBTAP00000064749 (9913.ENSBTAP00000064749) — abundance 8823AFDSI-PROTEOMICS-264Copy ID

AHSG (9913.ENSBTAP00000000673) — abundance 8425AFDSI-PROTEOMICS-265Copy ID

SERPINA1 (9913.ENSBTAP00000065816) — abundance 6904AFDSI-PROTEOMICS-266Copy ID

CSN1S2 (9913.ENSBTAP00000006590) — abundance 6717AFDSI-PROTEOMICS-267Copy ID

ACTC1 (9913.ENSBTAP00000065395) — abundance 5932AFDSI-PROTEOMICS-268Copy ID

HSPB1 (9913.ENSBTAP00000041898) — abundance 5776AFDSI-PROTEOMICS-269Copy ID

ACTG2 (9913.ENSBTAP00000020520) — abundance 5637AFDSI-PROTEOMICS-270Copy ID

LALBA (9913.ENSBTAP00000060771) — abundance 5528AFDSI-PROTEOMICS-271Copy ID

ACTA2 (9913.ENSBTAP00000036954) — abundance 5440AFDSI-PROTEOMICS-272Copy ID

ORM1 (9913.ENSBTAP00000022991) — abundance 5244AFDSI-PROTEOMICS-273Copy ID

ENSBTAP00000041617 (9913.ENSBTAP00000041617) — abundance 5227AFDSI-PROTEOMICS-274Copy ID

F1MLW7_BOVIN (9913.ENSBTAP00000031165) — abundance 5227AFDSI-PROTEOMICS-275Copy ID

ACTA1 (9913.ENSBTAP00000006532) — abundance 5016AFDSI-PROTEOMICS-276Copy ID

TAGLN (9913.ENSBTAP00000009469) — abundance 5008AFDSI-PROTEOMICS-277Copy ID

APOA2 (9913.ENSBTAP00000012138) — abundance 4701AFDSI-PROTEOMICS-278Copy ID

GAPDH (9913.ENSBTAP00000062798) — abundance 4523AFDSI-PROTEOMICS-279Copy ID

COL1A1 (9913.ENSBTAP00000017420) — abundance 4152AFDSI-PROTEOMICS-280Copy ID

HBG (9913.ENSBTAP00000043063) — abundance 3880AFDSI-PROTEOMICS-281Copy ID

LOC107131172 (9913.ENSBTAP00000055887) — abundance 3823AFDSI-PROTEOMICS-282Copy ID

CYCS (9913.ENSBTAP00000007918) — abundance 3782AFDSI-PROTEOMICS-283Copy ID

LOC100847700 (9913.ENSBTAP00000051780) — abundance 3782AFDSI-PROTEOMICS-284Copy ID

S100A4 (9913.ENSBTAP00000025561) — abundance 3452AFDSI-PROTEOMICS-285Copy ID

FABP1 (9913.ENSBTAP00000024032) — abundance 3337AFDSI-PROTEOMICS-286Copy ID

ANXA1 (9913.ENSBTAP00000021256) — abundance 3309AFDSI-PROTEOMICS-287Copy ID

LOC101902760 (9913.ENSBTAP00000068519) — abundance 2997AFDSI-PROTEOMICS-288Copy ID

KRT10 (9913.ENSBTAP00000017140) — abundance 2868AFDSI-PROTEOMICS-289Copy ID

ANXA2 (9913.ENSBTAP00000012655) — abundance 2843AFDSI-PROTEOMICS-290Copy ID

H2AC21 (9913.ENSBTAP00000043357) — abundance 2840AFDSI-PROTEOMICS-291Copy ID

F1MZ96_BOVIN (9913.ENSBTAP00000042747) — abundance 2705AFDSI-PROTEOMICS-292Copy ID

TPM2 (9913.ENSBTAP00000043502) — abundance 2635AFDSI-PROTEOMICS-293Copy ID

TMSB4X (9913.ENSBTAP00000024387) — abundance 2606AFDSI-PROTEOMICS-294Copy ID

UBA52 (9913.ENSBTAP00000010176) — abundance 2598AFDSI-PROTEOMICS-295Copy ID

CRYAB (9913.ENSBTAP00000059200) — abundance 2548AFDSI-PROTEOMICS-296Copy ID

HIST1H2AG-3 (9913.ENSBTAP00000066065) — abundance 2533AFDSI-PROTEOMICS-297Copy ID

HIST1H2AG-2 (9913.ENSBTAP00000033286) — abundance 2533AFDSI-PROTEOMICS-298Copy ID

HIST1H2AG (9913.ENSBTAP00000014123) — abundance 2533AFDSI-PROTEOMICS-299Copy ID

H2AFJ (9913.ENSBTAP00000040641) — abundance 2523AFDSI-PROTEOMICS-300Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: N-Terminal Protein Sequencing by Nicotinic Acid Derivatization and MS Analysis (PXD081064) ↗AFDSI-PROJREF-116Copy ID

PRIDE: Bos taurus ovarian granulosa cell succinylation (PXD079684) ↗AFDSI-PROJREF-117Copy ID

PRIDE: Bos taurus ovarian granulosa cell (PXD079679) ↗AFDSI-PROJREF-118Copy ID

PRIDE: Mini-Scale Cheese Peptidomics Reveals Strain-Specific Bitter Peptide Profiles During Cheese Aging (PXD079655) ↗AFDSI-PROJREF-119Copy ID

PRIDE: A streamlined high-throughput metaproteomic workflow for functional analysis of the rumen microbiome (PXD078749) ↗AFDSI-PROJREF-120Copy ID

PRIDE: Droplet microfluidic hydrogen/deuterium exchange for investigating protein dynamics with millisecond precision exchange (PXD077479) ↗AFDSI-PROJREF-121Copy ID

PRIDE: Complement proteins enriched in dextran-based microparticle (PXD077329) ↗AFDSI-PROJREF-122Copy ID

PRIDE: Inflammation markers are associated with small extracellular vesicle protein signatures in cows with Mycoplasma bovisInflammation markers are associated with small extracellular vesicle protein signatures in cows with Mycoplasma bovis (PXD076220) ↗AFDSI-PROJREF-123Copy ID

PRIDE: Development of an in vitro model of Mycoplasma bovis infection in static bioreactors for proteomic investigation of small extracellular vesicles for biomarker discovery (PXD076118) ↗AFDSI-PROJREF-124Copy ID

PRIDE: DDA and DIA analysis of calf thymus histone modifications using Prop-PIC derivatization (PXD075498) ↗AFDSI-PROJREF-125Copy ID

PRIDE: Conformational changes of shapeshifting protein G’e and immunoglobulin IgG probed by nanoESI ion mobility mass spectrometry. (PXD076256) ↗AFDSI-PROJREF-335Copy ID

Callosobruchus maculatus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Identification of novel ejaculated seminal fluid proteins in a seed beetle and division of labour across male accessory reproductive glands (PXD009967) ↗AFDSI-PROJREF-126Copy ID

Camelus dromedarius

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: IDENTIFICATION AND CHARACTERISATION OF TAXONOMICALLY INFORMATIVE PEPTIDES BY HIGH RESOLUTION MASS SPECTROMETRY FOR SOURCE IDENTIFICATION OF TRACE HAIR (PXD065721) ↗AFDSI-PROJREF-336Copy ID

PRIDE: Identification and Characterisation of Taxonomically Informative Peptides (PXD062555) ↗AFDSI-PROJREF-337Copy ID

PRIDE: COMPARATIVE PROTEOME ANALYSIS OF BIKANERI AND JAISALMERI CAMEL MILK IN INDIA (PXD058940) ↗AFDSI-PROJREF-338Copy ID

PRIDE: Paleoproteomic analysis of dental pulp proteins from camel teeth (PXD056179) ↗AFDSI-PROJREF-339Copy ID

PRIDE: Paleoproteomic profiling for identification of animal skin species in ancient Egyptian archaeological leather using liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS) (PXD033367) ↗AFDSI-PROJREF-340Copy ID

PRIDE: Multiomic analysis of the Arabian camel (Camelus dromedarius) kidney reveals a role for cholesterol in water conservation (PXD025644) ↗AFDSI-PROJREF-341Copy ID

PRIDE: In gel trypsin digested 1 D resolved bands of freeze-dried camel milk (PXD023290) ↗AFDSI-PROJREF-342Copy ID

PRIDE: Peptidomics analysis of dromedary camel supraoptic nucleus by tandem mass spectrometry (PXD013869) ↗AFDSI-PROJREF-343Copy ID

PRIDE: Heat shock of camel oocytes (PXD012199) ↗AFDSI-PROJREF-344Copy ID

PRIDE: thermotolerance of camel cells (PXD012159) ↗AFDSI-PROJREF-345Copy ID

PRIDE: thermotolerance of camel cells (PXD012159) ↗AFDSI-PROJREF-346Copy ID

Capra hircus

PaxDb — real per-protein abundance

ALB (9925.ENSCHIP00000020234) — abundance 25064AFDSI-PROTEOMICS-301Copy ID

ENSCHIP00000017756 (9925.ENSCHIP00000017756) — abundance 14430AFDSI-PROTEOMICS-302Copy ID

DES (9925.ENSCHIP00000004238) — abundance 8261AFDSI-PROTEOMICS-303Copy ID

ACTG2 (9925.ENSCHIP00000005081) — abundance 7820AFDSI-PROTEOMICS-304Copy ID

ACTB (9925.ENSCHIP00000011080) — abundance 7794AFDSI-PROTEOMICS-305Copy ID

DCN (9925.ENSCHIP00000018727) — abundance 7662AFDSI-PROTEOMICS-306Copy ID

LOC102168680 (9925.ENSCHIP00000030098) — abundance 7559AFDSI-PROTEOMICS-307Copy ID

ACTA2 (9925.ENSCHIP00000018506) — abundance 7210AFDSI-PROTEOMICS-308Copy ID

ACTC1 (9925.ENSCHIP00000002085) — abundance 7202AFDSI-PROTEOMICS-309Copy ID

ACTG1 (9925.ENSCHIP00000032903) — abundance 6986AFDSI-PROTEOMICS-310Copy ID

TAGLN (9925.ENSCHIP00000013286) — abundance 6769AFDSI-PROTEOMICS-311Copy ID

ACTA1 (9925.ENSCHIP00000010728) — abundance 6266AFDSI-PROTEOMICS-312Copy ID

LOC102175876 (9925.ENSCHIP00000018470) — abundance 6105AFDSI-PROTEOMICS-313Copy ID

KRT8 (9925.ENSCHIP00000019928) — abundance 5656AFDSI-PROTEOMICS-314Copy ID

HSPB1 (9925.ENSCHIP00000015277) — abundance 5288AFDSI-PROTEOMICS-315Copy ID

ANXA2 (9925.ENSCHIP00000002620) — abundance 5200AFDSI-PROTEOMICS-316Copy ID

ENSCHIP00000004152 (9925.ENSCHIP00000004152) — abundance 5037AFDSI-PROTEOMICS-317Copy ID

LOC102180307 (9925.ENSCHIP00000001460) — abundance 5037AFDSI-PROTEOMICS-318Copy ID

ENSCHIP00000009147 (9925.ENSCHIP00000009147) — abundance 5037AFDSI-PROTEOMICS-319Copy ID

ENSCHIP00000004308 (9925.ENSCHIP00000004308) — abundance 5037AFDSI-PROTEOMICS-320Copy ID

ENSCHIP00000009200 (9925.ENSCHIP00000009200) — abundance 5037AFDSI-PROTEOMICS-321Copy ID

ENSCHIP00000005277 (9925.ENSCHIP00000005277) — abundance 5037AFDSI-PROTEOMICS-322Copy ID

LOC102172954 (9925.ENSCHIP00000005645) — abundance 5037AFDSI-PROTEOMICS-323Copy ID

ENSCHIP00000005753 (9925.ENSCHIP00000005753) — abundance 5037AFDSI-PROTEOMICS-324Copy ID

LOC106503502 (9925.ENSCHIP00000006569) — abundance 5037AFDSI-PROTEOMICS-325Copy ID

ENSCHIP00000008488 (9925.ENSCHIP00000008488) — abundance 5037AFDSI-PROTEOMICS-326Copy ID

ENSCHIP00000011074 (9925.ENSCHIP00000011074) — abundance 5037AFDSI-PROTEOMICS-327Copy ID

LOC108636047 (9925.ENSCHIP00000006846) — abundance 5037AFDSI-PROTEOMICS-328Copy ID

LOC106503503 (9925.ENSCHIP00000007121) — abundance 5037AFDSI-PROTEOMICS-329Copy ID

LOC102168959 (9925.ENSCHIP00000020926) — abundance 4891AFDSI-PROTEOMICS-330Copy ID

VIM (9925.ENSCHIP00000022577) — abundance 4684AFDSI-PROTEOMICS-331Copy ID

LGALS1 (9925.ENSCHIP00000013044) — abundance 4626AFDSI-PROTEOMICS-332Copy ID

MIF (9925.ENSCHIP00000026598) — abundance 4466AFDSI-PROTEOMICS-333Copy ID

H1-4 (9925.ENSCHIP00000002713) — abundance 4349AFDSI-PROTEOMICS-334Copy ID

H1-3 (9925.ENSCHIP00000007238) — abundance 3973AFDSI-PROTEOMICS-335Copy ID

ENSCHIP00000008558 (9925.ENSCHIP00000008558) — abundance 3954AFDSI-PROTEOMICS-336Copy ID

H1-2 (9925.ENSCHIP00000024891) — abundance 3907AFDSI-PROTEOMICS-337Copy ID

LMNA (9925.ENSCHIP00000026441) — abundance 3833AFDSI-PROTEOMICS-338Copy ID

OGN (9925.ENSCHIP00000015864) — abundance 3692AFDSI-PROTEOMICS-339Copy ID

LOC106503501 (9925.ENSCHIP00000004174) — abundance 3663AFDSI-PROTEOMICS-340Copy ID

H2AW (9925.ENSCHIP00000002950) — abundance 3663AFDSI-PROTEOMICS-341Copy ID

LOC102182458 (9925.ENSCHIP00000004726) — abundance 3663AFDSI-PROTEOMICS-342Copy ID

TPM2 (9925.ENSCHIP00000013157) — abundance 3646AFDSI-PROTEOMICS-343Copy ID

H2AC6 (9925.ENSCHIP00000002247) — abundance 3580AFDSI-PROTEOMICS-344Copy ID

KRT19 (9925.ENSCHIP00000029362) — abundance 3561AFDSI-PROTEOMICS-345Copy ID

H2AC21 (9925.ENSCHIP00000002643) — abundance 3505AFDSI-PROTEOMICS-346Copy ID

LOC102168967 (9925.ENSCHIP00000009482) — abundance 3456AFDSI-PROTEOMICS-347Copy ID

PRELP (9925.ENSCHIP00000014004) — abundance 3420AFDSI-PROTEOMICS-348Copy ID

PARK7 (9925.ENSCHIP00000025227) — abundance 3324AFDSI-PROTEOMICS-349Copy ID

OVN (9925.ENSCHIP00000016347) — abundance 3251AFDSI-PROTEOMICS-350Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: GOAT DAIRY PROTEOMICS AND VALORIZATION (PXD068261) ↗AFDSI-PROJREF-127Copy ID

PRIDE: Proteomics of cyanidin 3-O-galactoside to alleviate LPS-induced inflammatory response in mammary epithelial cells of dairy goats (PXD063072) ↗AFDSI-PROJREF-128Copy ID

PRIDE: Identification and Characterisation of Taxonomically Informative Peptides (PXD062555) ↗AFDSI-PROJREF-129Copy ID

PRIDE: Comparative Proteomic Analysis of the Telogen-to-Anagen Transition in Cashmere Goat Secondary Hair Follicles (PXD060635) ↗AFDSI-PROJREF-130Copy ID

PRIDE: Part I: Proteomics Target Approach for Taxonomic and Sex Identification in Modern and Archaeological Enamel Caprines (PXD058275) ↗AFDSI-PROJREF-131Copy ID

PRIDE: Part II: Proteomics Target Approach for Taxonomic and Sex Identification in Modern and Archaeological Enamel Caprines (PXD058279) ↗AFDSI-PROJREF-132Copy ID

PRIDE: Combining multiomics to analyze the molecular mechanism of hair follicle cycle change in cashmere goats from Inner Mongolia. (PXD050798) ↗AFDSI-PROJREF-133Copy ID

PRIDE: Identification of key proteinIdentification of key proteins related to cashmere fibre diameter by integrated proteomics and bioinformatic analysiss related to cashmere fibre diameter by integrated proteomics and bioinformatic analysis (PXD050828) ↗AFDSI-PROJREF-134Copy ID

PRIDE: Establishment of goat mammary organoid cultures modeling the mammary gland development and lactation (PXD050745) ↗AFDSI-PROJREF-135Copy ID

PRIDE: Use of Proteomics for Dietary Reconstruction: a Case Study using Animal Teeth from Ancient Mesopotamia (PXD050140) ↗AFDSI-PROJREF-136Copy ID

Caretta caretta

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Palaeoproteomics (COL1) of Chelonia mydas and Caretta caretta (PXD036592) ↗AFDSI-PROJREF-137Copy ID

PRIDE: Loggerhead sea turtle (Caretta caretta) TMT-based plasma proteomics (PXD029569) ↗AFDSI-PROJREF-138Copy ID

Cicer arietinum

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Proteoform analysis by mass spectrometry reveals post-translational processing of legumins and vicilins in chickpeas (Cicer arietinum L.) (PXD078377) ↗AFDSI-PROJREF-347Copy ID

PRIDE: Peptidomics Mapping of Proteolysis Highlights Triple Activation of Sprouted Seeds by Germination, Homogenisation and Species Mixture. (PXD072115) ↗AFDSI-PROJREF-348Copy ID

PRIDE: Phosphoproteome enrichment strategy using complementary chemistries of Fe-NTA and TiO2 followed by LC-MS/MS (PXD057032) ↗AFDSI-PROJREF-349Copy ID

PRIDE: Comprehensive Endoplasmic Reticulum Proteomics Analysis in Chickpea (Cicer arietinum L.): Unveiling Cellular Secrets (PXD056907) ↗AFDSI-PROJREF-350Copy ID

PRIDE: The FAM114A proteins are adaptors for the recycling of Golgi enzymes - Fig1E-F (PXD054187) ↗AFDSI-PROJREF-351Copy ID

PRIDE: The FAM114A proteins are adaptors for the recycling of Golgi enzymes (PXD054030) ↗AFDSI-PROJREF-352Copy ID

PRIDE: Effect of a probiotic goat milk on the hepatic proteomic profile of mice fed a high-fat diet (PXD050536) ↗AFDSI-PROJREF-353Copy ID

PRIDE: An in-depth Mass Spectrometry Characterization of the SDS-PAGE Protein Profile of Legumins and Vicilins from Chickpea Seed (PXD049382) ↗AFDSI-PROJREF-354Copy ID

PRIDE: Proteolysis pattern of two variants of Chickpea using LC-MS/MS (PXD048224) ↗AFDSI-PROJREF-355Copy ID

PRIDE: Unravelling the molecular mechanism underlying drought stress response in chickpea via integrated multi-omics analysis (PXD041434) ↗AFDSI-PROJREF-356Copy ID

Coffea arabica

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Characterization of extracellular vesicles from cell suspension 2 cultures of Coffea arabica L. (PXD071909) ↗AFDSI-PROJREF-1Copy ID

PRIDE: Proteomics coupled machine learning—innovative approach in geographical origin authentication of green Coffea arabica (PXD059982) ↗AFDSI-PROJREF-2Copy ID

PRIDE: Differences in the abundance of auxin homeostasis proteins suggest a central role for in vitro tissue differentiation in Coffea arabica (PXD029928) ↗AFDSI-PROJREF-3Copy ID

PRIDE: Proteomic analyses of coffea arabica subjected to various conditions_Part 2 (PXD019830) ↗AFDSI-PROJREF-4Copy ID

PRIDE: Proteomic analyses of coffea arabica subjected to various conditions (PXD019474) ↗AFDSI-PROJREF-5Copy ID

PRIDE: Primary metabolism is distinctly modulated by plant resistance inducers in Coffea arabica leaves infected by Hemileia vastatrix (PXD016012) ↗AFDSI-PROJREF-6Copy ID

PRIDE: Seed comparative genomics in three coffee species evidence desiccation tolerance mechanisms among intermediate seeds (PXD015806) ↗AFDSI-PROJREF-7Copy ID

PRIDE: Proteome profile of coffee embryogenic cell suspensions (PXD002963) ↗AFDSI-PROJREF-8Copy ID

Coffea eugenioides

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Seed comparative genomics in three coffee species evidence desiccation tolerance mechanisms among intermediate seeds (PXD015806) ↗AFDSI-PROJREF-9Copy ID

Cotesia typhae

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Characterizing virulence differences in a parasitoid wasp through comparative transcriptomic and proteomic (PXD051968) ↗AFDSI-PROJREF-139Copy ID

Craterostigma plantagineum

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: The cell wall proteome of Craterostigma plantagineum cell cultures habituated to dichlobenil and isoxaben (PXD026723) ↗AFDSI-PROJREF-140Copy ID

PRIDE: The Cell Wall Proteome of Craterostigma plantagineum Cell Cultures Habituated to Dichlobenil and Isoxaben (PXD026733) ↗AFDSI-PROJREF-141Copy ID

PRIDE: Potential, Properties and Sources of Plant Derived Extracellular Vesicles and Nanovesicles (PXD024203) ↗AFDSI-PROJREF-142Copy ID

PRIDE: A multi-omics angle sheds light on the molecular mechanisms underlying desiccation tolerance in Craterostigma plantagineum (PXD020923) ↗AFDSI-PROJREF-143Copy ID

Cryptosporidium andersoni

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: TMT-based proteomic analysis and protein expression during excystation of Cryptosporidium andersoni (PXD028423) ↗AFDSI-PROJREF-357Copy ID

Cryptosporidium parvum

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Cryptosporidium secreted proteins form a complex layered interface with the host cell (PXD074689) ↗AFDSI-PROJREF-358Copy ID

PRIDE: Differentially and constantly expressed proteins identified through proteomic analysis of different Toxoplasma gondii field isolates carried out upon short- or long-term in vitro culture (PXD067210) ↗AFDSI-PROJREF-359Copy ID

PRIDE: Quantitative proteomics confirms CpKRS is over-expressed in genetically modified strain. (PXD050089) ↗AFDSI-PROJREF-360Copy ID

PRIDE: Host innate immune responses and microbiome profile of neonatal calves challenged with Cryptosporidium parvum and the effect of bovine colostrum supplementation (PXD040269) ↗AFDSI-PROJREF-361Copy ID

PRIDE: Spatial proteome map of Cryptosporidium parvum sporozoite (PXD038366) ↗AFDSI-PROJREF-362Copy ID

PRIDE: Thermal proteome profiling in Cryptosporidium parvum (PXD037942) ↗AFDSI-PROJREF-363Copy ID

PRIDE: Enrichment and Proteomic Identification of Cryptosporidium parvum Oocyst Wall (PXD029431) ↗AFDSI-PROJREF-364Copy ID

PRIDE: Secretome profiling of Cryptosporidium sporozoites in the initial interaction processes with host epithelial cells (PXD028969) ↗AFDSI-PROJREF-365Copy ID

PRIDE: Exploring the glycosylation state of the Cryptosporidium parvum CpTSP protein family-Cman pulldowns (PXD023934) ↗AFDSI-PROJREF-366Copy ID

PRIDE: Exploring the glycosylation state of the Cryptosporidium parvum CpTSP protein family-HILIC glycopeptide enrichment (PXD023936) ↗AFDSI-PROJREF-367Copy ID

Cucumis sativus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Impact of drought stress at 40% of field capacity on the allelopathic potential of Cosmos sulphureus Cav under greenhouse experiment (PXD065296) ↗AFDSI-PROJREF-368Copy ID

PRIDE: Proteomic analysis of the role of RALF34 small signaling peptides in the regulation of cucumber (Cucumis sativus) root development (PXD037725) ↗AFDSI-PROJREF-369Copy ID

PRIDE: Melatonin promotes chilling tolerance of cucumber seedlings by regulating antioxidant systems and relieving photoinhibition (PXD029134) ↗AFDSI-PROJREF-370Copy ID

PRIDE: H2S regulation the metabolism of cucumber in response to salt-stress through transcriptome and proteome analysis (PXD020642) ↗AFDSI-PROJREF-371Copy ID

PRIDE: Proteomic Analysis Reveals Key Proteins Involved in Ethylene-Induced Adventitious Root Development in Cucumber (Cucumis sativus L.) (PXD016444) ↗AFDSI-PROJREF-372Copy ID

PRIDE: Cucumber mosaic virus resistance: Comparative proteomics of contrasting Cucumis sativus cultivars after long-term infection (PXD015088) ↗AFDSI-PROJREF-373Copy ID

PRIDE: Analysis of protein regulation in cucumber leaves after Corynespora cassiicola inoculation: a proteomic approach (PXD012903) ↗AFDSI-PROJREF-374Copy ID

PRIDE: Comparative proteomic analysis provides novel insights into the complex responses to Pseudoperonospora cubensis infection of cucumber (Cucumis sativus L.) (PXD010844) ↗AFDSI-PROJREF-375Copy ID

PRIDE: Proteomic analysis of cucumber (Cucumis sativus) fruit peel in response to pre-storage cold acclimation (PXD008551) ↗AFDSI-PROJREF-376Copy ID

Culex quinquefasciatus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Proteomics Informed by Transcriptomics for Characterising Active Transposable Elements and Genome Annotation in Aedes aegypti (PXD003799) ↗AFDSI-PROJREF-377Copy ID

Dinothrombium tinctorium

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Genomes of trombidid mites reveal novel predicted allergens and laterally-transferred genes associated with secondary metabolism (PXD008346) ↗AFDSI-PROJREF-378Copy ID

Dioscorea alata

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Interplay of redox modulators and carbohydrate metabolism enzymes in Dioscorea alata tuber degradation and formation. (PXD014734) ↗AFDSI-PROJREF-144Copy ID

Diuraphis noxia

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Bacteria Associated with Russian Wheat Aphid (Diuraphis noxia) Enhance Aphid Virulence to Wheat (PXD010663) ↗AFDSI-PROJREF-145Copy ID

Drosophila mauritiana

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Quantitative proteomics reveals rapid divergence in the postmating response of female reproductive tracts among sibling species (PXD017708) ↗AFDSI-PROJREF-146Copy ID

Drosophila melanogaster

PaxDb — real per-protein abundance

CG7214 (7227.FBpp0079122) — abundance 10090AFDSI-PROTEOMICS-151Copy ID

Yp3 (7227.FBpp0311924) — abundance 10077AFDSI-PROTEOMICS-152Copy ID

CG7203 (7227.FBpp0312122) — abundance 9069AFDSI-PROTEOMICS-153Copy ID

Yp1 (7227.FBpp0312020) — abundance 8855AFDSI-PROTEOMICS-154Copy ID

Acp1 (7227.FBpp0079123) — abundance 8690AFDSI-PROTEOMICS-155Copy ID

Yp2 (7227.FBpp0308710) — abundance 8475AFDSI-PROTEOMICS-156Copy ID

Adh (7227.FBpp0100048) — abundance 7829AFDSI-PROTEOMICS-157Copy ID

awd (7227.FBpp0311978) — abundance 7753AFDSI-PROTEOMICS-158Copy ID

ATPsynbeta (7227.FBpp0305828) — abundance 7359AFDSI-PROTEOMICS-159Copy ID

RpL35 (7227.FBpp0070767) — abundance 6920AFDSI-PROTEOMICS-160Copy ID

Argk (7227.FBpp0076270) — abundance 6140AFDSI-PROTEOMICS-161Copy ID

Ald1 (7227.FBpp0084373) — abundance 5923AFDSI-PROTEOMICS-162Copy ID

Act57B (7227.FBpp0071448) — abundance 5651AFDSI-PROTEOMICS-163Copy ID

eEF1alpha1 (7227.FBpp0304260) — abundance 5254AFDSI-PROTEOMICS-164Copy ID

Act5C (7227.FBpp0311818) — abundance 5092AFDSI-PROTEOMICS-165Copy ID

Mhc (7227.FBpp0291042) — abundance 5076AFDSI-PROTEOMICS-166Copy ID

blw (7227.FBpp0071794) — abundance 4997AFDSI-PROTEOMICS-167Copy ID

Act88F (7227.FBpp0082597) — abundance 4974AFDSI-PROTEOMICS-168Copy ID

Act42A (7227.FBpp0085365) — abundance 4835AFDSI-PROTEOMICS-169Copy ID

Act87E (7227.FBpp0312019) — abundance 4796AFDSI-PROTEOMICS-170Copy ID

Scp1 (7227.FBpp0306952) — abundance 4785AFDSI-PROTEOMICS-171Copy ID

Act79B (7227.FBpp0306215) — abundance 4625AFDSI-PROTEOMICS-172Copy ID

Mlc1 (7227.FBpp0310544) — abundance 4534AFDSI-PROTEOMICS-173Copy ID

Obp99b (7227.FBpp0305400) — abundance 4415AFDSI-PROTEOMICS-174Copy ID

Eno (7227.FBpp0077572) — abundance 4361AFDSI-PROTEOMICS-175Copy ID

RpL14 (7227.FBpp0076359) — abundance 4358AFDSI-PROTEOMICS-176Copy ID

RpL39 (7227.FBpp0072094) — abundance 4257AFDSI-PROTEOMICS-177Copy ID

Mdh2 (7227.FBpp0082985) — abundance 4079AFDSI-PROTEOMICS-178Copy ID

Gapdh1 (7227.FBpp0087977) — abundance 3994AFDSI-PROTEOMICS-179Copy ID

Mlc2 (7227.FBpp0088688) — abundance 3993AFDSI-PROTEOMICS-180Copy ID

Fbp1 (7227.FBpp0075491) — abundance 3986AFDSI-PROTEOMICS-181Copy ID

Lcp3 (7227.FBpp0305732) — abundance 3941AFDSI-PROTEOMICS-182Copy ID

Gapdh2 (7227.FBpp0073922) — abundance 3931AFDSI-PROTEOMICS-183Copy ID

Lsp2 (7227.FBpp0311507) — abundance 3887AFDSI-PROTEOMICS-184Copy ID

RpS9 (7227.FBpp0309532) — abundance 3861AFDSI-PROTEOMICS-185Copy ID

Tm2 (7227.FBpp0089270) — abundance 3805AFDSI-PROTEOMICS-186Copy ID

Lcp4 (7227.FBpp0087823) — abundance 3801AFDSI-PROTEOMICS-187Copy ID

Hsc70-4 (7227.FBpp0082516) — abundance 3758AFDSI-PROTEOMICS-188Copy ID

RpL10 (7227.FBpp0306039) — abundance 3715AFDSI-PROTEOMICS-189Copy ID

betaTub56D (7227.FBpp0085721) — abundance 3713AFDSI-PROTEOMICS-190Copy ID

sesB (7227.FBpp0073280) — abundance 3685AFDSI-PROTEOMICS-191Copy ID

RpS13 (7227.FBpp0312104) — abundance 3666AFDSI-PROTEOMICS-192Copy ID

RpS15 (7227.FBpp0086269) — abundance 3565AFDSI-PROTEOMICS-193Copy ID

RpL28 (7227.FBpp0072957) — abundance 3457AFDSI-PROTEOMICS-194Copy ID

RpL13 (7227.FBpp0302626) — abundance 3425AFDSI-PROTEOMICS-195Copy ID

RpL27A (7227.FBpp0307135) — abundance 3380AFDSI-PROTEOMICS-196Copy ID

RpL8 (7227.FBpp0072802) — abundance 3320AFDSI-PROTEOMICS-197Copy ID

sta (7227.FBpp0070277) — abundance 3306AFDSI-PROTEOMICS-198Copy ID

RpS17 (7227.FBpp0076207) — abundance 3247AFDSI-PROTEOMICS-199Copy ID

Lsp1gamma (7227.FBpp0072365) — abundance 3234AFDSI-PROTEOMICS-200Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Polo/PLK1 phosphorylation relieves Centrosomin (Cnn) autoinhibition to drive centrosome scaffold assembly (PXD080319) ↗AFDSI-PROJREF-147Copy ID

PRIDE: Multiple intron motifs have redundant functions in trans-splicing of the mod(mdg4) locus (PXD079014) ↗AFDSI-PROJREF-148Copy ID

PRIDE: RpS12-mediated induction of the Xrp1short isoform links ribosomal protein mutations to cell competition (PXD076715) ↗AFDSI-PROJREF-149Copy ID

PRIDE: Microbiota-induced fatty acid synthesis facilitates intestinal infection and immune-mediated damage in Drosophila (PXD076700) ↗AFDSI-PROJREF-150Copy ID

PRIDE: Autophagy-driven Presynaptic Reorganization as a Molecular Signature of Brain Resilience (PXD076163) ↗AFDSI-PROJREF-151Copy ID

PRIDE: Identification of dArc binding partners from mouse C2C12 cells (PXD075863) ↗AFDSI-PROJREF-152Copy ID

PRIDE: Adipose Dicer-1 modulates systemic insulin signaling and longevity via a miR-8–Aop–Dilp6 axis (PXD075513) ↗AFDSI-PROJREF-153Copy ID

PRIDE: putzig safeguards genome integrity by contributing to the Piwi-mediated repression of transposon activity in the female germline of Drosophila in a two-tiered fashion (PXD075330) ↗AFDSI-PROJREF-154Copy ID

PRIDE: Cryo-EM structure, enzymatic activity and genome targeting of canonical PRC1 (PXD074618) ↗AFDSI-PROJREF-155Copy ID

PRIDE: HR3/RORα-mediated cholesterol sensing regulates TOR signaling (PXD074014) ↗AFDSI-PROJREF-156Copy ID

Drosophila simulans

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Recurrent innovation of protein-protein interactions in the Drosophila piRNA pathway (PXD053049) ↗AFDSI-PROJREF-157Copy ID

PRIDE: Quantitative proteomics reveals rapid divergence in the postmating response of female reproductive tracts among sibling species (PXD017708) ↗AFDSI-PROJREF-158Copy ID

Echis pyramidum

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: High-throughput proteomics of the 26 medically most important elapids and vipers from sub-Saharan Africa (PXD036161) ↗AFDSI-PROJREF-159Copy ID

Equus quagga

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Palaeoproteomics deconvolution of physical and genetic collagen mixtures (PXD079630) ↗AFDSI-PROJREF-492Copy ID

Eragrostis tef

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Tef (Eragrostis tef) iTRAQ-labelled protein fractions (PXD007907) ↗AFDSI-PROJREF-10Copy ID

Eucalyptus grandis

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Comparative Proteomics of Bark and Xylem Provides Insights into Age-Dependent Corticular Photosynthesis in Eucalyptus grandis (PXD067762) ↗AFDSI-PROJREF-160Copy ID

PRIDE: Plant defense against nematodes: Crucial role of Heat Shock Proteins and adaptive strategies (PXD058189) ↗AFDSI-PROJREF-161Copy ID

PRIDE: Changes in the sap proteome of Eucalyptus grandis and Eucalyptus urophylla plants grown at elevated CO2 atmosphere (PXD050082) ↗AFDSI-PROJREF-162Copy ID

PRIDE: Vascular sap proteome profiling of Eucalyptus grandis, Eucalyptus urophylla and Eucalyptus camaldulensis (PXD037915) ↗AFDSI-PROJREF-163Copy ID

PRIDE: Identification of novel peptide forms associated with seasonality and water restriction imposition in Eucalyptus grandis leaf proteome (PXD031100) ↗AFDSI-PROJREF-164Copy ID

PRIDE: The Eucalyptus grandis chloroplast proteome: leaf development and seasonal variations (PXD029004) ↗AFDSI-PROJREF-165Copy ID

PRIDE: Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry (PXD022110) ↗AFDSI-PROJREF-166Copy ID

PRIDE: Network analysis combining proteomics and metabolomics reveals new insights into early responses of Eucalyptus grandis during rust infection. (PXD021280) ↗AFDSI-PROJREF-167Copy ID

PRIDE: Proteomic profiles during adventitious rooting of Eucalyptus species relevant to the cellulose industry (Induction) (PXD013924) ↗AFDSI-PROJREF-168Copy ID

PRIDE: Proteomic profiles during adventitious rooting of Eucalyptus species relevant to the cellulose industry (Formation) (PXD013925) ↗AFDSI-PROJREF-169Copy ID

Eucalyptus urophylla

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Changes in the sap proteome of Eucalyptus grandis and Eucalyptus urophylla plants grown at elevated CO2 atmosphere (PXD050082) ↗AFDSI-PROJREF-170Copy ID

PRIDE: Vascular sap proteome profiling of Eucalyptus grandis, Eucalyptus urophylla and Eucalyptus camaldulensis (PXD037915) ↗AFDSI-PROJREF-171Copy ID

Fasciola gigantica

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Proteomic analysis of Fasciola gigantica excretory and secretory products (FgESPs) co-immunoprecipitated using a time course of infected buffalo sera (PXD038582) ↗AFDSI-PROJREF-379Copy ID

PRIDE: Bufffalo serum iTRAQ - Global serum proteomic changes in water buffaloes infected with Fasciola gigantica (PXD011576) ↗AFDSI-PROJREF-380Copy ID

Gallus gallus

PaxDb — real per-protein abundance

HBA1 (9031.ENSGALP00000050043) — abundance 21189AFDSI-PROTEOMICS-351Copy ID

OVAL (9031.ENSGALP00000036403) — abundance 20858AFDSI-PROTEOMICS-352Copy ID

TMSB4X (9031.ENSGALP00000040654) — abundance 17363AFDSI-PROTEOMICS-353Copy ID

ALB (9031.ENSGALP00000044604) — abundance 15597AFDSI-PROTEOMICS-354Copy ID

TF (9031.ENSGALP00000010405) — abundance 13773AFDSI-PROTEOMICS-355Copy ID

RPL39L (9031.ENSGALP00000038282) — abundance 11271AFDSI-PROTEOMICS-356Copy ID

LYZ (9031.ENSGALP00000016177) — abundance 9287AFDSI-PROTEOMICS-357Copy ID

APOV1 (9031.ENSGALP00000024373) — abundance 8859AFDSI-PROTEOMICS-358Copy ID

GAPDH (9031.ENSGALP00000063325) — abundance 8850AFDSI-PROTEOMICS-359Copy ID

APOA1 (9031.ENSGALP00000011510) — abundance 8344AFDSI-PROTEOMICS-360Copy ID

HBBA (9031.ENSGALP00000035593) — abundance 7049AFDSI-PROTEOMICS-361Copy ID

ORM1 (9031.ENSGALP00000008163) — abundance 6957AFDSI-PROTEOMICS-362Copy ID

VIM (9031.ENSGALP00000014107) — abundance 6788AFDSI-PROTEOMICS-363Copy ID

EEF1A1 (9031.ENSGALP00000061496) — abundance 6131AFDSI-PROTEOMICS-364Copy ID

ENO1 (9031.ENSGALP00000060414) — abundance 6057AFDSI-PROTEOMICS-365Copy ID

LOC776816 (9031.ENSGALP00000047898) — abundance 5402AFDSI-PROTEOMICS-366Copy ID

ACTB (9031.ENSGALP00000060844) — abundance 5301AFDSI-PROTEOMICS-367Copy ID

SPINK5 (9031.ENSGALP00000005535) — abundance 5206AFDSI-PROTEOMICS-368Copy ID

DES (9031.ENSGALP00000018424) — abundance 5140AFDSI-PROTEOMICS-369Copy ID

FGA (9031.ENSGALP00000015061) — abundance 4818AFDSI-PROTEOMICS-370Copy ID

VTG2 (9031.ENSGALP00000002888) — abundance 4562AFDSI-PROTEOMICS-371Copy ID

HBAD (9031.ENSGALP00000053010) — abundance 4377AFDSI-PROTEOMICS-372Copy ID

RPL38 (9031.ENSGALP00000002218) — abundance 4289AFDSI-PROTEOMICS-373Copy ID

HSPD1 (9031.ENSGALP00000013122) — abundance 4043AFDSI-PROTEOMICS-374Copy ID

PKLR (9031.ENSGALP00000049508) — abundance 3795AFDSI-PROTEOMICS-375Copy ID

CALR (9031.ENSGALP00000046274) — abundance 3795AFDSI-PROTEOMICS-376Copy ID

FGG (9031.ENSGALP00000015063) — abundance 3716AFDSI-PROTEOMICS-377Copy ID

CG-1B (9031.ENSGALP00000020275) — abundance 3625AFDSI-PROTEOMICS-378Copy ID

P4HB (9031.ENSGALP00000064334) — abundance 3493AFDSI-PROTEOMICS-379Copy ID

HSP90B1 (9031.ENSGALP00000054843) — abundance 3318AFDSI-PROTEOMICS-380Copy ID

KRT7 (9031.ENSGALP00000055200) — abundance 3317AFDSI-PROTEOMICS-381Copy ID

FGB (9031.ENSGALP00000038105) — abundance 3237AFDSI-PROTEOMICS-382Copy ID

HIST1H4B (9031.ENSGALP00000049875) — abundance 3228AFDSI-PROTEOMICS-383Copy ID

HIST1H4B-2 (9031.ENSGALP00000050789) — abundance 3228AFDSI-PROTEOMICS-384Copy ID

HIST1H4B-6 (9031.ENSGALP00000073829) — abundance 3228AFDSI-PROTEOMICS-385Copy ID

HIST1H4B-5 (9031.ENSGALP00000066009) — abundance 3228AFDSI-PROTEOMICS-386Copy ID

HIST1H4B-4 (9031.ENSGALP00000064928) — abundance 3228AFDSI-PROTEOMICS-387Copy ID

HIST1H46 (9031.ENSGALP00000058410) — abundance 3228AFDSI-PROTEOMICS-388Copy ID

HIST1H4B-3 (9031.ENSGALP00000054826) — abundance 3228AFDSI-PROTEOMICS-389Copy ID

TAGLN (9031.ENSGALP00000019399) — abundance 3194AFDSI-PROTEOMICS-390Copy ID

SPINK7 (9031.ENSGALP00000005544) — abundance 3192AFDSI-PROTEOMICS-391Copy ID

CKB (9031.ENSGALP00000047068) — abundance 3191AFDSI-PROTEOMICS-392Copy ID

LOC100858647 (9031.ENSGALP00000066378) — abundance 3186AFDSI-PROTEOMICS-393Copy ID

HIST1H2BF (9031.ENSGALP00000071464) — abundance 3137AFDSI-PROTEOMICS-394Copy ID

HIST1H2B7 (9031.ENSGALP00000071137) — abundance 3137AFDSI-PROTEOMICS-395Copy ID

HIST1H2BO (9031.ENSGALP00000042437) — abundance 3137AFDSI-PROTEOMICS-396Copy ID

HIST1H2B5 (9031.ENSGALP00000069619) — abundance 3137AFDSI-PROTEOMICS-397Copy ID

HIST1H2B7L4 (9031.ENSGALP00000065924) — abundance 3137AFDSI-PROTEOMICS-398Copy ID

HIST1H2B7L2 (9031.ENSGALP00000042501) — abundance 3137AFDSI-PROTEOMICS-399Copy ID

LBFABP (9031.ENSGALP00000006574) — abundance 3129AFDSI-PROTEOMICS-400Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Multi-Omics profiling reveals immunometabolic adaptations underlying disease resilience in indigenous Lueyang Silky Fowl compared to White Leghorns (PXD077559) ↗AFDSI-PROJREF-172Copy ID

PRIDE: Proton Transfer Charge Reduction Enables Isobaric Labeling-Based Proteoform Quantification of Overlapping Signals in Top-Down Mass Spectrometry (PXD074730) ↗AFDSI-PROJREF-173Copy ID

PRIDE: Proteomic remodeling of the chicken spleen during chicken astrovirus infection reveals coordinated interferon activation and stromal restructuring (PXD074601) ↗AFDSI-PROJREF-174Copy ID

PRIDE: Functional enrichment analysis of differentially expressed proteins (PXD072038) ↗AFDSI-PROJREF-175Copy ID

PRIDE: Proteomic of YsEVs from Unfertile and Fertilized Chicken Chicken YsEVs (PXD069777) ↗AFDSI-PROJREF-176Copy ID

PRIDE: Meat quality changes as measured by proteomic responses in chicken muscle after a diet with or without fibre and with or without space restrictions. (PXD069586) ↗AFDSI-PROJREF-177Copy ID

PRIDE: Integrative multi-omics analysis of dietary fibre-induced modulations in the composition and function of chicken caecal microbiota (PXD068444) ↗AFDSI-PROJREF-178Copy ID

PRIDE: Identification and characterization of the zebra finch (Taeniopygia guttata) sperm proteome (PXD067397) ↗AFDSI-PROJREF-179Copy ID

PRIDE: Identification of RNA-binding protein interactors of duck lncrna (lnc455) using Multiple Oligo-assisted RNA Pulldown with Hybridization followed by Mass Spectrometry (MORPH-MS) (PXD067094) ↗AFDSI-PROJREF-180Copy ID

PRIDE: GeLC-MS/MS analysis of hen egg vitelline membrane from freshly-laid eggs and eggs stored for 28 days at 4°C and 20°C (PXD066675) ↗AFDSI-PROJREF-181Copy ID

PRIDE: laying hens uterine fluid LC-MSMS (PXD078015) ↗AFDSI-PROJREF-331Copy ID

PRIDE: Conformational changes of shapeshifting protein G’e and immunoglobulin IgG probed by nanoESI ion mobility mass spectrometry. (PXD076256) ↗AFDSI-PROJREF-381Copy ID

PRIDE: Myoinositol usage in ileum microbiomes (PXD077163) ↗AFDSI-PROJREF-475Copy ID

PRIDE: Myoinositol usage in caecal microbiomes (PXD077115) ↗AFDSI-PROJREF-476Copy ID

PRIDE: Massive histone H3 phosphorylation without mitotic chromosome condensation (PXD078615) ↗AFDSI-PROJREF-500Copy ID

Gorilla gorilla gorilla

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Protein sequence comparison of human and non-human primate tooth proteomes (PXD018933) ↗AFDSI-PROJREF-11Copy ID

PRIDE: Human and Nonhuman Primate Lineage-Specific Footprints in the Salivary Proteome (PXD015850) ↗AFDSI-PROJREF-12Copy ID

Hermetia illucens

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: A multidisciplinary integrated approach for the identification and characterization of the AMP profile in Hermetia illucens hemolymph (PXD071144) ↗AFDSI-PROJREF-182Copy ID

PRIDE: Proteomic insights into novel food insects: Homology-based proteome characterization and allergenicity considerations for EU-regulated insect species (PXD061237) ↗AFDSI-PROJREF-183Copy ID

PRIDE: Comparative proteome profiling of Egg, Larva and Adult of Hermetia illucens (Diptera: Stratiomyidae) (PXD042131) ↗AFDSI-PROJREF-184Copy ID

PRIDE: Dataset from The proteome landscape of the black soldier fly provides insights into protein function and microbial diversity (PXD037977) ↗AFDSI-PROJREF-185Copy ID

PRIDE: On the compatibility of fish meal replacements in aquafeeds for rainbow trout. A combined metabolomic, proteomic and histological study. (PXD033201) ↗AFDSI-PROJREF-186Copy ID

PRIDE: Black soldier fly as protein source for salmon (PXD019125) ↗AFDSI-PROJREF-187Copy ID

Heterocephalus glaber

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Automated 16plex plasma proteomics with real-time search and ion mobility mass spectrometry enables large scale profiling in naked mole-rats and mice. (PXD022891) ↗AFDSI-PROJREF-13Copy ID

PRIDE: Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging (PXD008720) ↗AFDSI-PROJREF-14Copy ID

PRIDE: Global analysis of protein degradation rates in primary rodent skin fibroblasts (PXD007598) ↗AFDSI-PROJREF-15Copy ID

Homo sapiens

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Interactome of COPE protein in HeLa cells (PXD083284) ↗AFDSI-PROJREF-464Copy ID

PRIDE: Proteomic profiling of septal myocardium in hypertrophic cardiomyopathy (PXD083434) ↗AFDSI-PROJREF-382Copy ID

PRIDE: Motile Vesicles or MoVes are a migration-associated extracellular vesicle population carrying genomic DNA (PXD083320) ↗AFDSI-PROJREF-383Copy ID

PRIDE: MCL1 may not mediate chemoresistance: Hela Cells (PXD083239) ↗AFDSI-PROJREF-384Copy ID

PRIDE: surface proteome of WT vs. MGAT1 KO HeLa cells (PXD083032) ↗AFDSI-PROJREF-465Copy ID

PRIDE: Investigating N-terminal shedding of GPR125 in GPR125 overexpressing HEK293T cells using N- and C-terminal enrichment and different cleavage strategies (PXD083139) ↗AFDSI-PROJREF-385Copy ID

PRIDE: MCL1 may not mediate chemoresistance: HCT116 Data (PXD082999) ↗AFDSI-PROJREF-386Copy ID

PRIDE: Activity-based profiling of primary brain cells identifies covalent allosteric modulators of HCN channels (PXD082934) ↗AFDSI-PROJREF-387Copy ID

PRIDE: NSD2 binding proteins identification (PXD082950) ↗AFDSI-PROJREF-388Copy ID

PRIDE: A two-exon deletion and hypomorphic missense variant in GEMIN5 causes autosomal recessive ataxia (PXD082880) ↗AFDSI-PROJREF-389Copy ID

PRIDE: Mapping the GW182 CIM1 binding site on CNOT1(800-999) by HDX-MS (PXD082855) ↗AFDSI-PROJREF-390Copy ID

PRIDE: An improved capillary isoelectric focusing-mass spectrometry method for characterization of monoclonal antibody charge variants (PXD082799) ↗AFDSI-PROJREF-391Copy ID

PRIDE: Identification of Aurora B phosphorylation mediated by KAT2A-treated PGK1 in vitro (PXD083647) ↗AFDSI-PROJREF-461Copy ID

PRIDE: Nuclear TRiC states captured in situ (PXD083885) ↗AFDSI-PROJREF-472Copy ID

PRIDE: Characterisation of prostate cancer sialome re-engineering via CMAH transfection (PXD084162) ↗AFDSI-PROJREF-486Copy ID

PRIDE: FUT3-associated proteomic profiling in T3M4 pancreatic cancer cells following FUT3 knockdown (PXD083797) ↗AFDSI-PROJREF-487Copy ID

PRIDE: IgG Fc Glycosylation of Total and Disease-Specific Autoantibodies in Systemic Sclerosis (PXD083619) ↗AFDSI-PROJREF-488Copy ID

PRIDE: Allosteric disulfide control of ligand binding and endocytosis of KIR2DL4, the natural killer cell receptor for HLA-G (PXD083525) ↗AFDSI-PROJREF-490Copy ID

PRIDE: Optimizing efficacy to safety ratio of glucocorticoids in rheumatoid arthritis models by leveraging PPARα agonism (PXD084343) ↗AFDSI-PROJREF-493Copy ID

Hordeum vulgare

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Temperature and Raw Material Impact on Gluten Digestibility and Immunoreactive Peptides in Wheat, Rye, and Barley (PXD080314) ↗AFDSI-PROJREF-188Copy ID

PRIDE: Microbial proteins shape the dietary proteome of fermented foods (PXD070912) ↗AFDSI-PROJREF-189Copy ID

PRIDE: Multi-omics of barley Fusarium Head Blight converge on pathogen-triggered biosynthesis of aromatic amino acid derived chemical defense compounds (PXD068736) ↗AFDSI-PROJREF-190Copy ID

PRIDE: Proteomics Analysis of Celiac Disease-Active Peptides in Food Products with Partially Hydrolyzed Gluten (PXD068276) ↗AFDSI-PROJREF-191Copy ID

PRIDE: Characterizing Peptidase Activity of Barley Endoprotease B in Complex Technical Matrices of the Beer Brewing Process (PXD067323) ↗AFDSI-PROJREF-192Copy ID

PRIDE: What’s left from the brew? Investigating residual barley proteins in spent grains for downstream valorization opportunities (PXD062029) ↗AFDSI-PROJREF-193Copy ID

PRIDE: Identification of celiac-disease active peptides in gluten-free beers by nanoLC-MS/MS (PXD059719) ↗AFDSI-PROJREF-194Copy ID

PRIDE: Cross-Link of active PhK and GP (PXD059369) ↗AFDSI-PROJREF-195Copy ID

PRIDE: Anionic phospholipids connect barley ROP signaling with resistance and susceptibility to fungal cell entry (PXD056811) ↗AFDSI-PROJREF-196Copy ID

PRIDE: Plant Lipids Mediate Immune Responses to Fungal Lipids in Barley (PXD056788) ↗AFDSI-PROJREF-197Copy ID

Ixodes ricinus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Zebrafish quantitative proteomics (PXD078909) ↗AFDSI-PROJREF-198Copy ID

PRIDE: Proteomic insight into the ontogeny of blood-meal digestion in the tick Ixodes ricinus (PXD057920) ↗AFDSI-PROJREF-199Copy ID

PRIDE: Two Types of Axonal Muscarinic Acetylcholine Receptors Mediate Formation of Saliva Cocktail in the Tick Ixodes ricinus (PXD055362) ↗AFDSI-PROJREF-200Copy ID

PRIDE: The immune factors involved in the rapid clearance of bacteria from the midgut of the tick Ixodes ricinus (PXD053128) ↗AFDSI-PROJREF-201Copy ID

PRIDE: From the fat body to the hemolymph: Profiling tick immune and storage proteins through transcriptomics and proteomics (PXD047619) ↗AFDSI-PROJREF-202Copy ID

PRIDE: Insight into the dynamics of Ixodes ricinus nymphal midgut proteome (PXD042405) ↗AFDSI-PROJREF-203Copy ID

PRIDE: Tick (Ixodes ricinus) salivary antigens by LC-MS/MS (PXD021370) ↗AFDSI-PROJREF-204Copy ID

PRIDE: Integration of transcriptome and proteome annotation in the naive Ixodes ricinus midgut with genome sequencing (PXD001796) ↗AFDSI-PROJREF-205Copy ID

Lanistes nyassanus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: PVF proteome of three Ampullariidae snails (PXD070092) ↗AFDSI-PROJREF-466Copy ID

Leishmania donovani

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Analysis of proteins immunoprecipitated with anti-FLAG antibodies from Leishmania donovani promastigotes expressing Cdc45-FLAG or carrying empty vector (PXD064001) ↗AFDSI-PROJREF-392Copy ID

PRIDE: Exploring the mode of action of a novel antileishmanial compound using thermal proteome profiling and other OMICs tools (PXD063779) ↗AFDSI-PROJREF-393Copy ID

PRIDE: Leishmania regulates host YY1: comparative proteomic analysis identifies infection modulated YY1 dependent proteinsLeishmania regulates host YY1: comparative proteomic analysis identifies infection modulated YY1 dependent proteins (PXD059968) ↗AFDSI-PROJREF-394Copy ID

PRIDE: Proteomics analysis of lysine methylated proteins from Leishmania donovani strain 1S: wild type and set mutants (PXD057511) ↗AFDSI-PROJREF-395Copy ID

PRIDE: Proteomics analysis of lysine methylated proteins from Leishmania donovani strain 1S: wild type and set mutants (PXD057513) ↗AFDSI-PROJREF-396Copy ID

PRIDE: Proteomics analysis of lysine methylated proteins from Leishmania donovani strain 1S: wild type and set mutants (PXD057514) ↗AFDSI-PROJREF-397Copy ID

PRIDE: Proteomics analysis of lysine methylated proteins from Leishmania donovani strain 1S: wild type and set mutants (PXD056970) ↗AFDSI-PROJREF-398Copy ID

PRIDE: Sterol 14-alpha demethylase (CYP51) activity in Leishmania donovani is likely dependent upon cytochrome P450 reductase 1 (PXD052472) ↗AFDSI-PROJREF-399Copy ID

PRIDE: Experimental proteome of Leishmania donovani (HU3 strain) promastigotes (PXD051920) ↗AFDSI-PROJREF-400Copy ID

PRIDE: An oligosaccharyltransferase from Leishmania donovani increases the N-glycan occupancy on plant-produced IgG1 (PXD043623) ↗AFDSI-PROJREF-401Copy ID

Leishmania infantum

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Proteomic Dataset of Non-Specific Interactors in Leishmania infantum (PXD067464) ↗AFDSI-PROJREF-206Copy ID

PRIDE: Affinity purification-mass spectrometry to identify proteins interacting with Leishmania LINF_180011100 (PXD062031) ↗AFDSI-PROJREF-207Copy ID

PRIDE: Extracellular vesicles proteomic profile in anti-TNF immunosuppressed mice: insights into protein dysregulation during Leishmania infantum infection (PXD060935) ↗AFDSI-PROJREF-208Copy ID

PRIDE: Proteomic analysis of Plasma-derived Extracellular Vesicles reveals different biomarkers for monitoring visceral leishmaniasis progression (PXD060604) ↗AFDSI-PROJREF-209Copy ID

PRIDE: The related EIF4G3 and EIF4G4 initiation factors from Leishmania: dissimilar modes of action during translation revealed by a comparative proteomic approach (PXD058985) ↗AFDSI-PROJREF-210Copy ID

PRIDE: Quantitative proteomics of infected macrophages reveals novel Leishmania virulence factors (PXD058427) ↗AFDSI-PROJREF-211Copy ID

PRIDE: Mass spectrometry analysis of the Skp1 and Cullin1 interactome in Leishmania infantum (PXD051961) ↗AFDSI-PROJREF-212Copy ID

PRIDE: Proteomic characterization of extracellular vesicles recovered from peripheral blood from a patient with active leishmaniasis in the context of HIV co-infection (PXD049001) ↗AFDSI-PROJREF-213Copy ID

PRIDE: T. brucei whole cell proteome changes upon exposure to the experimental phthalimide-based trypanocidal drug PHT-39 (PXD043204) ↗AFDSI-PROJREF-214Copy ID

PRIDE: DIA-MS serum proteomics in dogs with leishmaniosis (PXD039765) ↗AFDSI-PROJREF-215Copy ID

PRIDE: Analysis of flagella proteins in three different leishmaniasis pathways (PXD070964) ↗AFDSI-PROJREF-473Copy ID

Leishmania tarentolae

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: LC-MS of the VTC Complex BioID from Leishmania tarentolae (PXD075501) ↗AFDSI-PROJREF-402Copy ID

PRIDE: A conserved mechanism for the retrieval of polyubiquitinated proteins from cilia (PXD062789) ↗AFDSI-PROJREF-403Copy ID

PRIDE: Leishmania tarentolae axonemal components (PXD059158) ↗AFDSI-PROJREF-404Copy ID

PRIDE: Evolutionary adaptations of doublet microtubules in trypanosomatid parasites (PXD057610) ↗AFDSI-PROJREF-405Copy ID

PRIDE: In vivo structure-function analysis and redox interactomes of Leishmania tarentolae Erv (PXD027121) ↗AFDSI-PROJREF-406Copy ID

PRIDE: Proteomic analysis of the secretome of seven Leishmania species (PXD023228) ↗AFDSI-PROJREF-407Copy ID

PRIDE: Structure of the full kinetoplastids mitoribosome and insight on its large subunit maturation (PXD018981) ↗AFDSI-PROJREF-408Copy ID

PRIDE: Unique features of mRNA translation initiation in trypanosomatids (PXD016063) ↗AFDSI-PROJREF-409Copy ID

Leptopilina boulardi

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Drosophila melanogaster hemolymph gelatinase (PXD045527) ↗AFDSI-PROJREF-216Copy ID

PRIDE: Proteomics of larval secreted proteins for Leptopilina boulardi and Leptopilina heterotoma (PXD043741) ↗AFDSI-PROJREF-217Copy ID

PRIDE: Convergent origin and accelerated evolution of vesicle-associated RhoGAP proteins in two unrelated parasitoid wasps (PXD041695) ↗AFDSI-PROJREF-218Copy ID

PRIDE: Leptopilina boulardi (strain Lb17) venom gland proteome (PXD023836) ↗AFDSI-PROJREF-219Copy ID

Loa loa

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Protein phosphorylation networks in Baylisascaris procyonis revealed by phosphoproteomic analysis (PXD066529) ↗AFDSI-PROJREF-220Copy ID

PRIDE: Plasma Proteomics Analysis of Human Host Response to Loa Loa, Validation (PXD063487) ↗AFDSI-PROJREF-221Copy ID

PRIDE: Plasma Proteomics Analysis of Human Host Response to Loa Loa (PXD057547) ↗AFDSI-PROJREF-222Copy ID

PRIDE: Filariasis test strip (FTS) antibody recognition of Brugia malayi glycoproteins (PXD027003) ↗AFDSI-PROJREF-223Copy ID

Loxodonta africana

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Enamel sexing of mammoth from Kostenki (PXD048461) ↗AFDSI-PROJREF-16Copy ID

PRIDE: Species identification of ivory and bone museum objects using minimally invasive proteomics (PXD042536) ↗AFDSI-PROJREF-17Copy ID

PRIDE: Proteomic analysis and ligand-binding studies of the odorant-binding protein OBP1 in the elephant's trunk (PXD036751) ↗AFDSI-PROJREF-18Copy ID

PRIDE: SPIN - Species by Proteome INvestigation (PXD024487) ↗AFDSI-PROJREF-19Copy ID

PRIDE: Meta-proteomic analysis of two mammoth’s trunk for an indirect picture of their habitat and characterization of the alpha-1 type I collagen sequence (PXD029558) ↗AFDSI-PROJREF-20Copy ID

PRIDE: Proteomic Analysis of the Shandrin Mammoth by EVA Technology and High-Resolution Mass Spectrometry: What is its Gut Telling Us? (PXD025518) ↗AFDSI-PROJREF-21Copy ID

PRIDE: ProAlanase is an effective alternative to trypsin for proteomics applications and disulfide bond mapping_part3 (PXD021703) ↗AFDSI-PROJREF-22Copy ID

PRIDE: ProAlanase is an effective alternative to trypsin for proteomics applications and disulfide bond mapping_part2 (PXD021191) ↗AFDSI-PROJREF-23Copy ID

PRIDE: ProAlanase is an effective alternative to trypsin for proteomics applications and disulfide bond mapping (PXD019039) ↗AFDSI-PROJREF-24Copy ID

PRIDE: Proteomics of muscle and bone marrow samples from the 28,000-year-old remains of a woolly mammoth (Mammuthus primigenius). (PXD012741) ↗AFDSI-PROJREF-25Copy ID

PRIDE: Palaeoproteomics deconvolution of physical and genetic collagen mixtures (PXD079630) ↗AFDSI-PROJREF-494Copy ID

Manihot esculenta

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Proteomics of cassava storage roots before and after shoot pruning (PXD045690) ↗AFDSI-PROJREF-224Copy ID

PRIDE: Efficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes (PXD038813) ↗AFDSI-PROJREF-225Copy ID

PRIDE: Vascular rays mediate radial assimilate transport in tuberous roots of Manihot esculenta (PXD014001) ↗AFDSI-PROJREF-226Copy ID

PRIDE: Large-scale proteome characterization of the cassava root (PXD000587) ↗AFDSI-PROJREF-227Copy ID

Microcebus lehilahytsara

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Characterisation of urinary WFDC12 in nocturnal basal primates, mouse lemurs (Microcebus spp.), C4PR_LIV (PXD005196) ↗AFDSI-PROJREF-410Copy ID

Microchloropsis gaditana

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: A Data-Independent-Acquisition-based proteomic approach towards understanding the acclimation strategy of Microchloropsis gaditana CCMP526 in hypersaline conditions (PXD017297) ↗AFDSI-PROJREF-411Copy ID

PRIDE: A Data-Independent-Acquisition-based proteomic approach towards understanding the acclimation strategy of Microchloropsis gaditana CCMP526 in hypersaline conditions (PXD017164) ↗AFDSI-PROJREF-412Copy ID

Moneuplotes crassus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Euplotes crassus global proteome (PXD004333) ↗AFDSI-PROJREF-413Copy ID

Mus musculus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Motile Vesicles or MoVes are a migration-associated extracellular vesicle population carrying genomic DNA (PXD083320) ↗AFDSI-PROJREF-414Copy ID

PRIDE: GDF15 Resolves Liver Inflammation in MASH Independently of Reductions in Food Intake or Weight Loss (PXD083028) ↗AFDSI-PROJREF-415Copy ID

PRIDE: Single-oocyte DIA proteomic profiling during follicular development in mice (PXD082998) ↗AFDSI-PROJREF-416Copy ID

PRIDE: Activity-based profiling of primary brain cells identifies covalent allosteric modulators of HCN channels (PXD082934) ↗AFDSI-PROJREF-417Copy ID

PRIDE: Proteomic and phosphoproteomic analysis of mouse nerves and neuromas by TMT and mass spectrometry. (PXD082960) ↗AFDSI-PROJREF-418Copy ID

PRIDE: A lifespan multi-tissue atlas of non-canonical peptides reveals organ- and life-stage-specific proteomic remodeling in mice (PXD082651) ↗AFDSI-PROJREF-419Copy ID

PRIDE: Multi-region proteomics of synaptosomes and cytosolic fractions of Chrdl1 KO and WT mouse brains (PXD082639) ↗AFDSI-PROJREF-420Copy ID

PRIDE: Engineering Palmitoylated G-Quadruplex Aptamers to Target STAT3 and Overcome Therapeutic Resistance in Pancreatic Cancer (PXD082487) ↗AFDSI-PROJREF-421Copy ID

PRIDE: Nucleosides and Oligonucleotides analysis using LC-MS/MS in mouse liver (PXD082484) ↗AFDSI-PROJREF-422Copy ID

PRIDE: Mapping of ATR–ATRIP phosphorylation sites before and after autophosphorylation (PXD082486) ↗AFDSI-PROJREF-423Copy ID

PRIDE: Identification of SCGB3A1-interacting proteins by pull-down coupled with mass spectrometry (PXD083435) ↗AFDSI-PROJREF-456Copy ID

PRIDE: Regulation of female reproduction through Lactobacillus johnsonii-associated L-phenylalanine: mouse ovary proteomics (PXD083384) ↗AFDSI-PROJREF-467Copy ID

PRIDE: Regulation of female reproduction through Lactobacillus johnsonii-associated L-phenylalanine (PXD083329) ↗AFDSI-PROJREF-468Copy ID

PRIDE: Alternative splicing of a species- and skeletal muscle specific microexon diversifies the menu of clathrin heavy chains in mice and rats (PXD082922) ↗AFDSI-PROJREF-477Copy ID

PRIDE: Contracting Skeletal Muscle Releases Antioxidant-Enriched Extracellular Vesicles and Non-vesicular Extracellular Nanoparticles (PXD084099) ↗AFDSI-PROJREF-479Copy ID

PRIDE: Proteomic profiling of the secretome and cellular proteome of mouse satellite glial cells (PXD084070) ↗AFDSI-PROJREF-480Copy ID

PRIDE: Uhrf1 loss disrupts CTCF-associated chromatin organization during early mouse embryogenesis (PXD084341) ↗AFDSI-PROJREF-495Copy ID

Nothobranchius furzeri

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Senolytics improve the neurogenic potential of non-glial progenitors and neurorepair in the dorsal pallium of aged killifish independent of inflammation (PXD036437) ↗AFDSI-PROJREF-424Copy ID

PRIDE: Antibody repertoire sequencing reveals systemic and mucosal immunosenescence in the short-lived turquoise killifish (PXD029992) ↗AFDSI-PROJREF-425Copy ID

PRIDE: Reduced proteasome activity in the aging brainresults in ribosome stoichiometry loss and aggregation (PXD012314) ↗AFDSI-PROJREF-426Copy ID

PRIDE: Reduced proteasome activity in the aging brainresults in ribosome stoichiometry loss and aggregation (PXD018399) ↗AFDSI-PROJREF-427Copy ID

PRIDE: Reduced proteasome activity in the aging brain results in ribosome stoichiometry loss and aggregation (PXD016587) ↗AFDSI-PROJREF-428Copy ID

PRIDE: Reduced proteasome activity in the aging brain results in ribosome stoichiometry loss and aggregation (PXD016459) ↗AFDSI-PROJREF-429Copy ID

Oreochromis mossambicus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Oremo DK0022 - Molecular phenotyping of salinity stress responses in tilapia gills (PRD000753) ↗AFDSI-PROJREF-26Copy ID

Oreochromis niloticus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Type B gelatin obtained by ultrasound-assisted extraction from Nile tilapia (Oreochromis niloticus) scales. (PXD071911) ↗AFDSI-PROJREF-27Copy ID

PRIDE: Development and proteome characterisation of muscle cell culture derived from Genetically improved farmed tilapia, Oreochromis niloticus (Linnaeus,1758) (PXD060219) ↗AFDSI-PROJREF-28Copy ID

PRIDE: COL1A2 Barcoding: Bone Species Identification via Shotgun Proteomics (PXD045402) ↗AFDSI-PROJREF-29Copy ID

PRIDE: Impact of bioinformatic search parameters for peptide identification and their post-translational modifications: case study of proteolyzed gelatines from beef, pork and fish. (PXD040820) ↗AFDSI-PROJREF-30Copy ID

PRIDE: Rapid speciation of cichlids fishes may be explained by evolutionary divergence of novel open reading frames (PXD019072) ↗AFDSI-PROJREF-31Copy ID

PRIDE: The liver,spleen,brain,intestine and kidney tissue of the Oreochromis niloticus which infected with Streptococcus agalactiae LC-MSMS (PXD014616) ↗AFDSI-PROJREF-32Copy ID

Ornithodoros moubata

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Functional analyses of the histone-like A104R protein of African swine fever virus and of a homologous pseudogene product found in soft tick genomes (PXD067191) ↗AFDSI-PROJREF-430Copy ID

PRIDE: A simple non-invasive method to collect soft tick saliva reveals differences in Ornithodoros moubata saliva composition between ticks infected and uninfected with Borrelia duttonii spirochetes (PXD038824) ↗AFDSI-PROJREF-431Copy ID

PRIDE: Proteomics informed by transcriptomics for a qualitative and quantitative analysis of the sialoproteome of Ornithodoros moubata adult ticks. SWATH Label Free quantitation (PXD025680) ↗AFDSI-PROJREF-432Copy ID

PRIDE: Proteomics informed by transcriptomics for a qualitative and quantitative analysis of the sialoproteome of Ornithodoros moubata adult ticks. DDA Label free quantitation (PXD025658) ↗AFDSI-PROJREF-433Copy ID

PRIDE: Proteomics informed by transcriptomics for a qualitative and quantitative analysis of the sialoproteome of Ornithodoros moubata adult tick. DDA Identification (PXD025657) ↗AFDSI-PROJREF-434Copy ID

PRIDE: Proteomics informed by transcriptomics for a qualitative and quantitative analysis of the sialoproteome of Ornithodoros moubata adult ticks. SWATH Spectral Library building (PXD025660) ↗AFDSI-PROJREF-435Copy ID

Oryza barthii

PaxDb — real per-protein abundance

A0A0D3GVI1 (65489.A0A0D3GVI1) — abundance 33668AFDSI-PROTEOMICS-401Copy ID

A0A0D3HQA8 (65489.A0A0D3HQA8) — abundance 31421AFDSI-PROTEOMICS-402Copy ID

A0A0D3ERP4 (65489.A0A0D3ERP4) — abundance 25516AFDSI-PROTEOMICS-403Copy ID

A0A0D3EP96 (65489.A0A0D3EP96) — abundance 23338AFDSI-PROTEOMICS-404Copy ID

A0A0D3HTH6 (65489.A0A0D3HTH6) — abundance 23113AFDSI-PROTEOMICS-405Copy ID

A0A0D3HTH8 (65489.A0A0D3HTH8) — abundance 23100AFDSI-PROTEOMICS-406Copy ID

A0A0D3HT79 (65489.A0A0D3HT79) — abundance 23100AFDSI-PROTEOMICS-407Copy ID

A0A0D3HMK0 (65489.A0A0D3HMK0) — abundance 20845AFDSI-PROTEOMICS-408Copy ID

A0A0D3H383 (65489.A0A0D3H383) — abundance 18154AFDSI-PROTEOMICS-409Copy ID

A0A0D3GS39 (65489.A0A0D3GS39) — abundance 18100AFDSI-PROTEOMICS-410Copy ID

A0A0D3F7Z2 (65489.A0A0D3F7Z2) — abundance 16256AFDSI-PROTEOMICS-411Copy ID

A0A0D3F206 (65489.A0A0D3F206) — abundance 16149AFDSI-PROTEOMICS-412Copy ID

A0A0D3GY08 (65489.A0A0D3GY08) — abundance 15695AFDSI-PROTEOMICS-413Copy ID

A0A0D3GM44 (65489.A0A0D3GM44) — abundance 15350AFDSI-PROTEOMICS-414Copy ID

A0A0D3HIR1 (65489.A0A0D3HIR1) — abundance 13915AFDSI-PROTEOMICS-415Copy ID

A0A0D3FWM3 (65489.A0A0D3FWM3) — abundance 13852AFDSI-PROTEOMICS-416Copy ID

A0A0D3HMK8 (65489.A0A0D3HMK8) — abundance 12981AFDSI-PROTEOMICS-417Copy ID

A0A0D3HPE1 (65489.A0A0D3HPE1) — abundance 11834AFDSI-PROTEOMICS-418Copy ID

A0A0D3H139 (65489.A0A0D3H139) — abundance 11789AFDSI-PROTEOMICS-419Copy ID

CYP-1 (65489.I0J182) — abundance 11601AFDSI-PROTEOMICS-420Copy ID

A0A0D3HK10 (65489.A0A0D3HK10) — abundance 11288AFDSI-PROTEOMICS-421Copy ID

A0A0D3G9D3 (65489.A0A0D3G9D3) — abundance 11270AFDSI-PROTEOMICS-422Copy ID

A0A0D3GCF4 (65489.A0A0D3GCF4) — abundance 10198AFDSI-PROTEOMICS-423Copy ID

A0A0D3H388 (65489.A0A0D3H388) — abundance 9491AFDSI-PROTEOMICS-424Copy ID

A0A0D3FDC6 (65489.A0A0D3FDC6) — abundance 9242AFDSI-PROTEOMICS-425Copy ID

A0A0D3F629 (65489.A0A0D3F629) — abundance 8590AFDSI-PROTEOMICS-426Copy ID

A0A0D3EQX2 (65489.A0A0D3EQX2) — abundance 7941AFDSI-PROTEOMICS-427Copy ID

A0A0D3F748 (65489.A0A0D3F748) — abundance 7715AFDSI-PROTEOMICS-428Copy ID

A0A0D3GSA9 (65489.A0A0D3GSA9) — abundance 7488AFDSI-PROTEOMICS-429Copy ID

A0A0D3FWK4 (65489.A0A0D3FWK4) — abundance 7378AFDSI-PROTEOMICS-430Copy ID

A0A0D3G162 (65489.A0A0D3G162) — abundance 7169AFDSI-PROTEOMICS-431Copy ID

A0A0D3FKW7 (65489.A0A0D3FKW7) — abundance 6983AFDSI-PROTEOMICS-432Copy ID

A0A0D3FPM9 (65489.A0A0D3FPM9) — abundance 6815AFDSI-PROTEOMICS-433Copy ID

A0A0D3F9A4 (65489.A0A0D3F9A4) — abundance 6702AFDSI-PROTEOMICS-434Copy ID

A0A0D3GMW3 (65489.A0A0D3GMW3) — abundance 6548AFDSI-PROTEOMICS-435Copy ID

A0A0D3FTC4 (65489.A0A0D3FTC4) — abundance 6079AFDSI-PROTEOMICS-436Copy ID

A0A0D3ETF2 (65489.A0A0D3ETF2) — abundance 5802AFDSI-PROTEOMICS-437Copy ID

A0A0D3FX92 (65489.A0A0D3FX92) — abundance 5737AFDSI-PROTEOMICS-438Copy ID

A0A0D3GMA7 (65489.A0A0D3GMA7) — abundance 5359AFDSI-PROTEOMICS-439Copy ID

A0A0D3FH32 (65489.A0A0D3FH32) — abundance 4971AFDSI-PROTEOMICS-440Copy ID

A0A0D3HLJ3 (65489.A0A0D3HLJ3) — abundance 4915AFDSI-PROTEOMICS-441Copy ID

A0A0D3GSR5 (65489.A0A0D3GSR5) — abundance 4790AFDSI-PROTEOMICS-442Copy ID

A0A0D3GNM7 (65489.A0A0D3GNM7) — abundance 4734AFDSI-PROTEOMICS-443Copy ID

A0A0D3HFL7 (65489.A0A0D3HFL7) — abundance 4701AFDSI-PROTEOMICS-444Copy ID

A0A0D3HER2 (65489.A0A0D3HER2) — abundance 4621AFDSI-PROTEOMICS-445Copy ID

A0A0D3GSF3 (65489.A0A0D3GSF3) — abundance 4384AFDSI-PROTEOMICS-446Copy ID

A0A0D3G284 (65489.A0A0D3G284) — abundance 4328AFDSI-PROTEOMICS-447Copy ID

A0A0D3FDE6 (65489.A0A0D3FDE6) — abundance 4266AFDSI-PROTEOMICS-448Copy ID

A0A0D3G0K7 (65489.A0A0D3G0K7) — abundance 4249AFDSI-PROTEOMICS-449Copy ID

A0A0D3FMN6 (65489.A0A0D3FMN6) — abundance 4207AFDSI-PROTEOMICS-450Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Oryza sativa cv. Nipponbare and Oryza barthii as unexpected tolerance and susceptibility sources against Schizotetranychus oryzae (Acari: Tetranychidae) mite infestation (PXD020940) ↗AFDSI-PROJREF-228Copy ID

PRIDE: Energetics- and transport-related protein abundance responds differentially to salt in Oryza australiensis roots (PXD013701) ↗AFDSI-PROJREF-229Copy ID

Oryza glaberrima

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Wild and cultivated species of rice have distinctive proteomic responses to drought (PXD019885) ↗AFDSI-PROJREF-230Copy ID

PRIDE: Energetics- and transport-related protein abundance responds differentially to salt in Oryza australiensis roots (PXD013701) ↗AFDSI-PROJREF-231Copy ID

Oryza longistaminata

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Quantitative proteomics during anthers development in Oryza longistaminata (PXD028805) ↗AFDSI-PROJREF-436Copy ID

Oryza sativa

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Proteomics Data of dsRNA-treated rice leaves (PXD081287) ↗AFDSI-PROJREF-232Copy ID

PRIDE: Phage depolymerase modulates virulence and biofilm in hypervirulent Klebsiella pneumoniae by CPS-mediated suppression of type 3 fimbriae (PXD080233) ↗AFDSI-PROJREF-233Copy ID

PRIDE: LC-MSMS analysis of crocus sativus at different floral developmental stage. (PXD076029) ↗AFDSI-PROJREF-234Copy ID

PRIDE: Label-Free Quantification of Nuclear Proteins in Six Plant Species (PXD074734) ↗AFDSI-PROJREF-235Copy ID

PRIDE: Proteomic Insights into Rice Protein Palmitoylation and Its Role in Cytosolic Translation (PXD073446) ↗AFDSI-PROJREF-236Copy ID

PRIDE: H2S‑mediated protein persulfidation regulates redox metabolic flux underlying salt stress resilience in rice (PXD072089) ↗AFDSI-PROJREF-237Copy ID

PRIDE: H2S‑mediated protein persulfidation regulates redox metabolic flux underlying salt stress resilience in rice (PXD072035) ↗AFDSI-PROJREF-238Copy ID

PRIDE: Co-immunoprecipitation coupled with mass for OsMADS2 in rice (PXD071875) ↗AFDSI-PROJREF-239Copy ID

PRIDE: Proteomic profiling of rice (Oryza sativa Nipponbare) roots during compatible interaction with the root-knot nematode Meloidogyne graminicola (PXD071707) ↗AFDSI-PROJREF-240Copy ID

PRIDE: Identification of potential Rsf1 promoter-interacting proteins in rice (Oryza sativa Nipponbare) roots during nematode infection (PXD071646) ↗AFDSI-PROJREF-241Copy ID

PRIDE: Investigation of interacting proteins of PROTEIN L-ISOASPARTYL METHYLTRANSFERASE (PIMT) during ShB pathogenesis and identification of isoAsp accumulation in ALDH and PBZ1. (PXD080366) ↗AFDSI-PROJREF-484Copy ID

Ovis aries

PaxDb — real per-protein abundance

S100A4 (9940.ENSOARP00000000653) — abundance 18035AFDSI-PROTEOMICS-201Copy ID

VIM (9940.ENSOARP00000012143) — abundance 12794AFDSI-PROTEOMICS-202Copy ID

ACTB (9940.ENSOARP00000003215) — abundance 12673AFDSI-PROTEOMICS-203Copy ID

GAPDH (9940.ENSOARP00000008476) — abundance 9690AFDSI-PROTEOMICS-204Copy ID

ACTG1 (9940.ENSOARP00000019868) — abundance 7773AFDSI-PROTEOMICS-205Copy ID

ANXA2 (9940.ENSOARP00000022381) — abundance 7385AFDSI-PROTEOMICS-206Copy ID

LOC101106384 (9940.ENSOARP00000004049) — abundance 6560AFDSI-PROTEOMICS-207Copy ID

TAGLN (9940.ENSOARP00000004463) — abundance 6102AFDSI-PROTEOMICS-208Copy ID

CFL1 (9940.ENSOARP00000019439) — abundance 5678AFDSI-PROTEOMICS-209Copy ID

LGALS1 (9940.ENSOARP00000014976) — abundance 5646AFDSI-PROTEOMICS-210Copy ID

PRDX1 (9940.ENSOARP00000001787) — abundance 5632AFDSI-PROTEOMICS-211Copy ID

PKM (9940.ENSOARP00000020288) — abundance 5550AFDSI-PROTEOMICS-212Copy ID

TPM2 (9940.ENSOARP00000012741) — abundance 4951AFDSI-PROTEOMICS-213Copy ID

PPIB (9940.ENSOARP00000022299) — abundance 4538AFDSI-PROTEOMICS-214Copy ID

S100A10 (9940.ENSOARP00000022651) — abundance 4242AFDSI-PROTEOMICS-215Copy ID

TPM1 (9940.ENSOARP00000022353) — abundance 4190AFDSI-PROTEOMICS-216Copy ID

TAGLN2 (9940.ENSOARP00000008665) — abundance 3956AFDSI-PROTEOMICS-217Copy ID

TPM4 (9940.ENSOARP00000000904) — abundance 3911AFDSI-PROTEOMICS-218Copy ID

ANXA5 (9940.ENSOARP00000015915) — abundance 3887AFDSI-PROTEOMICS-219Copy ID

SUB1 (9940.ENSOARP00000013029) — abundance 3767AFDSI-PROTEOMICS-220Copy ID

LMNA (9940.ENSOARP00000005894) — abundance 3648AFDSI-PROTEOMICS-221Copy ID

RPLP1 (9940.ENSOARP00000020044) — abundance 3625AFDSI-PROTEOMICS-222Copy ID

W5P2A1_SHEEP (9940.ENSOARP00000004550) — abundance 3625AFDSI-PROTEOMICS-223Copy ID

HSPA5 (9940.ENSOARP00000013846) — abundance 3484AFDSI-PROTEOMICS-224Copy ID

ACTA1 (9940.ENSOARP00000003239) — abundance 3463AFDSI-PROTEOMICS-225Copy ID

ACTA2 (9940.ENSOARP00000015893) — abundance 3329AFDSI-PROTEOMICS-226Copy ID

HSPA8 (9940.ENSOARP00000000124) — abundance 3305AFDSI-PROTEOMICS-227Copy ID

TPI1 (9940.ENSOARP00000005822) — abundance 3273AFDSI-PROTEOMICS-228Copy ID

LOC101116286 (9940.ENSOARP00000021509) — abundance 3122AFDSI-PROTEOMICS-229Copy ID

TUBA1B (9940.ENSOARP00000020285) — abundance 3110AFDSI-PROTEOMICS-230Copy ID

SERPINH1 (9940.ENSOARP00000012672) — abundance 3106AFDSI-PROTEOMICS-231Copy ID

ACTG2 (9940.ENSOARP00000012979) — abundance 3096AFDSI-PROTEOMICS-232Copy ID

RPL27A (9940.ENSOARP00000000368) — abundance 3055AFDSI-PROTEOMICS-233Copy ID

YWHAZ (9940.ENSOARP00000020034) — abundance 3012AFDSI-PROTEOMICS-234Copy ID

ATP5F1B (9940.ENSOARP00000008911) — abundance 2982AFDSI-PROTEOMICS-235Copy ID

RPS5 (9940.ENSOARP00000004113) — abundance 2978AFDSI-PROTEOMICS-236Copy ID

PPIA (9940.ENSOARP00000016266) — abundance 2944AFDSI-PROTEOMICS-237Copy ID

ANXA1 (9940.ENSOARP00000013575) — abundance 2885AFDSI-PROTEOMICS-238Copy ID

W5P6Q5_SHEEP (9940.ENSOARP00000006109) — abundance 2861AFDSI-PROTEOMICS-239Copy ID

PDIA6 (9940.ENSOARP00000016820) — abundance 2850AFDSI-PROTEOMICS-240Copy ID

W5P3B5_SHEEP (9940.ENSOARP00000004915) — abundance 2848AFDSI-PROTEOMICS-241Copy ID

RPL18 (9940.ENSOARP00000012792) — abundance 2841AFDSI-PROTEOMICS-242Copy ID

W5PYX0_SHEEP (9940.ENSOARP00000015656) — abundance 2841AFDSI-PROTEOMICS-243Copy ID

ALDOA (9940.ENSOARP00000004428) — abundance 2836AFDSI-PROTEOMICS-244Copy ID

CALR (9940.ENSOARP00000010588) — abundance 2785AFDSI-PROTEOMICS-245Copy ID

RPS3 (9940.ENSOARP00000012352) — abundance 2773AFDSI-PROTEOMICS-246Copy ID

TUBA4A (9940.ENSOARP00000021496) — abundance 2745AFDSI-PROTEOMICS-247Copy ID

FLNA (9940.ENSOARP00000005603) — abundance 2697AFDSI-PROTEOMICS-248Copy ID

ACTC1 (9940.ENSOARP00000021469) — abundance 2675AFDSI-PROTEOMICS-249Copy ID

EEF2 (9940.ENSOARP00000011910) — abundance 2618AFDSI-PROTEOMICS-250Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Amphiregulin drives mitochondrial vesicle packaging and delivery for immune modulation (PXD074552) ↗AFDSI-PROJREF-242Copy ID

PRIDE: Proteomic and morphologic characterization of ovine macrophage differentiation and polarization – cell lysates (PXD069059) ↗AFDSI-PROJREF-243Copy ID

PRIDE: Proteomic and morphologic characterization of ovine macrophage differentiation and polarization - secretomes (PXD068541) ↗AFDSI-PROJREF-244Copy ID

PRIDE: Metabolomic and proteomic differences in susceptible and benzimidazole-resistant adult females and males of Haemonchus contortus (PXD067321) ↗AFDSI-PROJREF-245Copy ID

PRIDE: Copper Trafficking in Sheep: A Pilot Proteomic Analysis of Enterocytes and Hepatocytes Under Dietary Copper Supplementation (PXD063823) ↗AFDSI-PROJREF-246Copy ID

PRIDE: Identification and Characterisation of Taxonomically Informative Peptides (PXD062555) ↗AFDSI-PROJREF-247Copy ID

PRIDE: Lipid Scrambling Pathways in the Sec61 Translocon Complex (PXD062310) ↗AFDSI-PROJREF-248Copy ID

PRIDE: Proteotyping fine-grain analysis of the cardiac relic of Louis XIV (PXD061530) ↗AFDSI-PROJREF-249Copy ID

PRIDE: Sheep faeces preservation affects microbiome activity (PXD060439) ↗AFDSI-PROJREF-250Copy ID

PRIDE: Microbial alginate foraging is conserved in geographically and taxonomically distinct ruminant microbiomes (PXD059090) ↗AFDSI-PROJREF-251Copy ID

PRIDE: Multi‑Omics Characterization of CDK4/hTERT Immortalized Ovine Satellite Cells (PXD080998) ↗AFDSI-PROJREF-462Copy ID

PRIDE: Felipe Sheep EV DIA LC/MS/MS using the Orbitrap Astral (PXD077206) ↗AFDSI-PROJREF-481Copy ID

PRIDE: Palaeoproteomics deconvolution of physical and genetic collagen mixtures (PXD079630) ↗AFDSI-PROJREF-496Copy ID

Panthera leo

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Proteomic data: The Japanese Archipelago sheltered cave lions, not tigers, during the Late Pleistocene (PXD065297) ↗AFDSI-PROJREF-33Copy ID

PRIDE: COL1 database samples for the Late Pleistocene of Western Eurasia (PXD003190) ↗AFDSI-PROJREF-34Copy ID

PRIDE: Identifying sources of tick blood meals using unidentified tandem mass spectral libraries (PXD000170) ↗AFDSI-PROJREF-35Copy ID

PRIDE: Palaeoproteomics deconvolution of physical and genetic collagen mixtures (PXD079630) ↗AFDSI-PROJREF-497Copy ID

Phytophthora cinnamomi

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Phosphite Inhibits Phytophthora cinnamomi by Downregulating Oxidoreductases and Disrupting Energy Metabolism (PXD063718) ↗AFDSI-PROJREF-252Copy ID

PRIDE: Proteomic and Metabolomic study of the Quercus ilex response to Phytophthora cinnamomi, the main causal agent of the decline syndrome, and the identification of putative markers of resistance (PXD046909) ↗AFDSI-PROJREF-253Copy ID

PRIDE: Targeted delivery of tumor necrosis factor in combination with lomustine induces a T-cell dependent regression of glioblastoma (PXD041234) ↗AFDSI-PROJREF-254Copy ID

PRIDE: Differences in the proteomic and metabolomic response during the early stages of Phytophthora cinnamomi infection of two Quercus species with contrasting degrees of susceptibility. (PXD033162) ↗AFDSI-PROJREF-255Copy ID

PRIDE: Proteomic response to drought and Phytophthora cinnamomi in Quercus ilex. (PXD025704) ↗AFDSI-PROJREF-256Copy ID

PRIDE: Integrated proteomic and metabolomic profiling of Phytophthora cinnamomi attack on sweet chestnut (Castanea sativa) reveals distinct molecular reprogramming proximal to the infection site and away from it (PXD022381) ↗AFDSI-PROJREF-257Copy ID

PRIDE: Disclosing proteins in cork oak plants associated with the immune response to P. cinnamomi inoculation in a long-term assay (PXD021455) ↗AFDSI-PROJREF-258Copy ID

Plasmodium falciparum

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Plasmodium falciparum PfMyoF with a Rab-like tail domain associates with perinuclear membranes and trafficking proteins (PXD077305) ↗AFDSI-PROJREF-259Copy ID

PRIDE: The translatome of quiescent Plasmodium falciparum gametocytes reveals parasite pyridoxal 5’-phosphate (PLP) biosynthesis is essential for efficient mosquito stage development (PXD075878) ↗AFDSI-PROJREF-260Copy ID

PRIDE: TurboID Proximity Profiling of FIKK10.2 (PF3D7_1039000) in Plasmodium falciparum–Infected Red Blood Cells During Febrile Heat Stress (PXD073890) ↗AFDSI-PROJREF-261Copy ID

PRIDE: Phosphoproteomics of Plasmodium falciparum infected red blood cells under Heat Stress (PXD073843) ↗AFDSI-PROJREF-262Copy ID

PRIDE: Functional characterisation of components in two Plasmodium falciparum Cullin-RING-Ligase complexes (PXD072749) ↗AFDSI-PROJREF-263Copy ID

PRIDE: Validation of Solvent Proteome Profiling for Antimalarial Drug Target Deconvolution (PXD071156) ↗AFDSI-PROJREF-264Copy ID

PRIDE: High-resolution spatial proteomics of Plasmodium falciparum schizonts using hyperLOPIT and TMT-based mass spectrometry (PXD070842) ↗AFDSI-PROJREF-265Copy ID

PRIDE: Determination of highly accurate small molecule:protein affinity constants at amino acid resolution using Hydrogen Deuterium Exchange Mass Spectrometry (HDX-MS) (PXD070051) ↗AFDSI-PROJREF-266Copy ID

PRIDE: Plasmofraction: Deciphering membrane protein complexes in Plasmodium falciparum gametocytes via integrative structural systems biology (PXD068680) ↗AFDSI-PROJREF-267Copy ID

PRIDE: Deciphering Membrane Protein Complexes in Plasmodium falciparum Gametocytes via Cross-Linking Mass Spectrometry and Structural Modeling (PXD067699) ↗AFDSI-PROJREF-268Copy ID

PRIDE: Chemoproteomic profiling of Plasmodium falciparum Hsp90 inhibition reveals functional link to DNA replication pathways (PXD079493) ↗AFDSI-PROJREF-332Copy ID

PRIDE: MMV2224 project pulldown experimental data (PXD075229) ↗AFDSI-PROJREF-469Copy ID

PRIDE: MMV2224 project isothermal TPP experiments (PXD075163) ↗AFDSI-PROJREF-470Copy ID

Plasmodium falciparum 365.1

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathway (PXD032358) ↗AFDSI-PROJREF-437Copy ID

PRIDE: Red blood cell BCL-xL is required for Plasmodium falciparum survival: insights into host-directed malaria therapies (PXD032276) ↗AFDSI-PROJREF-438Copy ID

Plasmodium falciparum 58.1

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Determination of highly accurate small molecule:protein affinity constants at amino acid resolution using Hydrogen Deuterium Exchange Mass Spectrometry (HDX-MS) (PXD070051) ↗AFDSI-PROJREF-439Copy ID

PRIDE: Deciphering Membrane Protein Complexes in Plasmodium falciparum Gametocytes via Cross-Linking Mass Spectrometry and Structural Modeling (PXD067699) ↗AFDSI-PROJREF-440Copy ID

PRIDE: Proteomic analysis of L-Methionine Sulfoximine (MSO)-treated Plasmodium falciparum by LC-MS/MS (PXD032797) ↗AFDSI-PROJREF-441Copy ID

PRIDE: The antimalarial natural product salinipostin A identifies essential alpha/beta serine hydrolases involved in lipid metabolism in P. falciparum parasites (PXD016835) ↗AFDSI-PROJREF-442Copy ID

Plasmodium falciparum Palo Alto/Uganda

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Plasmodium falciparum schizont proteome (PXD008250) ↗AFDSI-PROJREF-443Copy ID

Plasmodium malariae

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Differential trafficking and expression of PIR proteins in acute and chronic Plasmodium infections (PXD031586) ↗AFDSI-PROJREF-269Copy ID

PRIDE: Protein ubiquitylation is essential for the schizont to merozoite transition in Plasmodium falciparum blood-stage development (PXD014998) ↗AFDSI-PROJREF-270Copy ID

Plasmodium vivax

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Immmunopeptidomics data from reticulocytes of Plasmodium vivax infected human donors (PXD077321) ↗AFDSI-PROJREF-271Copy ID

PRIDE: Invasion preferences suggest a possible role for Plasmodium falciparum parasites in the expansion of Duffy negativity in West and Central Africa (PXD065766) ↗AFDSI-PROJREF-272Copy ID

PRIDE: On-target, dual aminopeptidase inhibition provides cross-species antimalarial activity (PXD046006) ↗AFDSI-PROJREF-273Copy ID

PRIDE: Chemoproteomics validates selective targeting of Plasmodium M1 alanyl aminopeptidase as a cross-species strategy to treat malaria (PXD044125) ↗AFDSI-PROJREF-274Copy ID

PRIDE: Mass spectrometry identification of biomarkers in extracellular vesicles from Plasmodium vivax liver hypnozoite infections (PXD035719) ↗AFDSI-PROJREF-275Copy ID

PRIDE: Antigen discovery in circulating extracellular vesicles from Plasmodium vivax patients (PXD029439) ↗AFDSI-PROJREF-276Copy ID

PRIDE: Plasma-derived extracellular vesicles from Plasmodium vivax patients signal spleen fibroblasts via NF-kB facilitating parasite cytoadherence (PXD018337) ↗AFDSI-PROJREF-277Copy ID

PRIDE: Next-generation diagnostic biomarkers for vivax malaria (PXD015165) ↗AFDSI-PROJREF-278Copy ID

PRIDE: Proteomic characterization of plasma-derived exosomes from P. vivax infected FRG huHep mice (PXD008945) ↗AFDSI-PROJREF-279Copy ID

PRIDE: Investigation of Plasmodium vivax trophozoite-schizont transition proteome (PXD005769) ↗AFDSI-PROJREF-280Copy ID

Rhipicephalus microplus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: BME/CTVM6 cells infected by SFTSV MOI 1 (PXD054068) ↗AFDSI-PROJREF-281Copy ID

PRIDE: Transcriptional and proteomic dynamics of severe fever with thrombocytopenia syndrome virus infection in Rhipicephalus microplus cells identify antiviral host factors. (PXD052311) ↗AFDSI-PROJREF-282Copy ID

PRIDE: The ovaries of ivermectin-resistant Rhipicephalus microplus strains display proteomic adaptations involving the induction of xenobiotic detoxification and structural remodeling mechanisms (PXD034493) ↗AFDSI-PROJREF-283Copy ID

PRIDE: Intestine proteome of Rhipicephalus microplus tick reveal key molecular features associated with resistant to ivermectin (PXD031231) ↗AFDSI-PROJREF-284Copy ID

PRIDE: Innate and adaptive serum proteomes of Santa Gertrudis cattle in response to Rhipicephalus microplus infestation (PXD020518) ↗AFDSI-PROJREF-285Copy ID

PRIDE: Gené organ engagement in lipid metabolism revealed by a combined transcriptomic and proteomic approach (PXD011223) ↗AFDSI-PROJREF-286Copy ID

PRIDE: Tick host range adaptation: changes in protein profiles in Ixodes scapularis and Amblyomma americanum saliva during stimulation to feed on different hosts (PXD007712) ↗AFDSI-PROJREF-287Copy ID

PRIDE: Bottom-up proteomics analysis of tick salivary glands (PXD005773) ↗AFDSI-PROJREF-288Copy ID

Ricinus communis

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: IgM hyposialylation drives podocyte injury in pediatric and young adult patients with podocytopathies (PXD070406) ↗AFDSI-PROJREF-289Copy ID

PRIDE: Identification of Unknown Biological Toxin Protein Using Mass Spectrometry: A Case Study on De Novo Sequencing of Ricin (PXD061213) ↗AFDSI-PROJREF-290Copy ID

PRIDE: Easy, robust, and reproducible online acid cleavage of proteins in mobile phase for fast quantitative LC-MS bottom-up proteomics – application for ricin detection (PXD041124) ↗AFDSI-PROJREF-291Copy ID

PRIDE: Mapping the castor bean endosperm proteome revealed a metabolic interaction between plastid, mitochondria, and peroxisomes to optimize seedling growth (PXD040932) ↗AFDSI-PROJREF-292Copy ID

PRIDE: Identification and functional characterization of proteins interacting with cohesin complex in yeast Saccharomyces cerevisiae. (PXD037034) ↗AFDSI-PROJREF-293Copy ID

PRIDE: Glycoproteomics Landscape of Asymptomatic and Symptomatic Human Alzheimer's Disease Brain (PXD032219) ↗AFDSI-PROJREF-294Copy ID

PRIDE: Effect of soybean agglutinin on biological function of gut (PXD025751) ↗AFDSI-PROJREF-295Copy ID

PRIDE: Identification and relative quantification of hFSH glycoforms in women sera by PRM MS based approach. (PXD025585) ↗AFDSI-PROJREF-296Copy ID

PRIDE: Accurately Assigning Peptides to Spectra When Only a Subset of Peptides Are Relevant (PXD022778) ↗AFDSI-PROJREF-297Copy ID

PRIDE: Tryp-N: A thermostable protease for the production of N-terminal argininyl and lysinyl peptides (PXD017048) ↗AFDSI-PROJREF-298Copy ID

Rousettus aegyptiacus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Serum proteome of the Egyptian rousette bat (Rousettus aegyptiacus) reveals signatures of immunity, proteostasis, and metabolism (PXD072134) ↗AFDSI-PROJREF-444Copy ID

PRIDE: Comparative single-cell and spatial transcriptomics illuminate bat immunity and barrier tissue evolution (PXD058003) ↗AFDSI-PROJREF-445Copy ID

PRIDE: Identifying sources of tick blood meals using unidentified tandem mass spectral libraries (PXD000170) ↗AFDSI-PROJREF-446Copy ID

Schistosoma haematobium

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Mouse Bladder LC-MS after bladder wall injection with Schistosoma haematobium eggs (PXD029852) ↗AFDSI-PROJREF-300Copy ID

PRIDE: Proteome profiling identifies urinary biomarkers for Schistosomiasis Haematobium among school-aged children (PXD059942) ↗AFDSI-PROJREF-299Copy ID

PRIDE: Proteomic analysis of two populations of Schistosoma haematobium-derived extracellular vesicles: exosome-like vesicles and microvesicles (PXD019462) ↗AFDSI-PROJREF-301Copy ID

PRIDE: Schistosoma haematobium proteomes (PXD011137) ↗AFDSI-PROJREF-302Copy ID

PRIDE: Quantitative label-free proteomic analysis of human urine to identify novel protein biomarkers for schistosomiasis (PXD006438) ↗AFDSI-PROJREF-303Copy ID

Sorghum bicolor

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Early regulatory networks driving somatic embryogenesis in Saccharum spp. L. revealed by time-resolved proteomics (PXD068502) ↗AFDSI-PROJREF-36Copy ID

PRIDE: Impact of drought stress at 40% of field capacity on the allelopathic potential of Cosmos sulphureus Cav under greenhouse experiment (PXD065296) ↗AFDSI-PROJREF-37Copy ID

PRIDE: Response of Sorghum bicolor to salt stress (PXD058939) ↗AFDSI-PROJREF-38Copy ID

PRIDE: Sorghum seed proteome by 4D-DIA (PXD056775) ↗AFDSI-PROJREF-39Copy ID

PRIDE: Proteomic dataset of two contrasting sorghum genotypes to drought, heat and combined drought and heat stress (PXD052255) ↗AFDSI-PROJREF-40Copy ID

PRIDE: Functional annotation of proteins for signaling network inference in non-model species (PXD037601) ↗AFDSI-PROJREF-41Copy ID

PRIDE: Sorghum brewing SWATH-MS proteomics (PXD034981) ↗AFDSI-PROJREF-42Copy ID

PRIDE: Reprogramming of sorghum proteome in response to sugarcane aphid infestation (PXD029691) ↗AFDSI-PROJREF-43Copy ID

PRIDE: Confirmation of plant viral proteins and identification of specific viral strains by nanoLC-ESI-Q-TOF using single-leaf-tissue samples (PXD022456) ↗AFDSI-PROJREF-44Copy ID

PRIDE: Heat stress triggers protein secretion into the extracellular matrix of sorghum cell suspension cultures (PXD021536) ↗AFDSI-PROJREF-45Copy ID

Spodoptera frugiperda

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: WDR82 Code Coordinates Transcription and pre-mRNA 3’-End Processing Through Regulated Phosphorylation (PXD081886) ↗AFDSI-PROJREF-304Copy ID

PRIDE: β-tubulin phosphorylation by Chk1 is required for normal spindle formation during cell division (PXD074543) ↗AFDSI-PROJREF-305Copy ID

PRIDE: Identification of phosphorylations sites in Arabidopsis thaliana BSU1 recombinantly expressed in insect cells, and when incubated with the GSK3 kinase BIN2. (PXD073452) ↗AFDSI-PROJREF-306Copy ID

PRIDE: Architecture and Function of Holocentric CENP-A-Independent Inner Kinetochores (PXD063391) ↗AFDSI-PROJREF-307Copy ID

PRIDE: Pioneering Protein Degradation for Agricultural Applications (PXD062088) ↗AFDSI-PROJREF-308Copy ID

PRIDE: Phosphorylation regulates the chromatin remodeler SMARCAD1 in nucleosome binding, ATP hydrolysis, and histone exchange (PXD055450) ↗AFDSI-PROJREF-309Copy ID

PRIDE: Phosphorylation regulates the chromatin remodeler SMARCAD1 in nucleosome binding, ATP hydrolysis, and histone exchange (PXD055413) ↗AFDSI-PROJREF-310Copy ID

PRIDE: Phosphorylation regulates the chromatin remodeler SMARCAD1 in nucleosome binding, ATP hydrolysis, and histone exchange (PXD055412) ↗AFDSI-PROJREF-311Copy ID

PRIDE: Phosphorylation regulates the chromatin remodeler SMARCAD1 in nucleosome binding, ATP hydrolysis, and histone exchange (PXD055414) ↗AFDSI-PROJREF-312Copy ID

PRIDE: Differential alkylation of PHLPP2 (PXD052551) ↗AFDSI-PROJREF-313Copy ID

PRIDE: Phospho-mapping of MAST1 in MAST1:14-3-3η complex purified from Sf9 cells (PXD063795) ↗AFDSI-PROJREF-457Copy ID

PRIDE: Phospho-mapping of MAST1 after in vitro phosphorylation by PAK4 (PXD063803) ↗AFDSI-PROJREF-458Copy ID

PRIDE: Phospho-mapping of MAST1 after autophosphorylation (PXD063802) ↗AFDSI-PROJREF-459Copy ID

Spodoptera littoralis

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Proteomic variation in the oral secretion of Spodoptera exigua and Spodoptera littoralis larvae in response to different food sources (PXD056472) ↗AFDSI-PROJREF-314Copy ID

PRIDE: Divergent venom effectors correlate with ecological niche in neuropteran predators (PXD047026) ↗AFDSI-PROJREF-315Copy ID

Stegodyphus mimosarum

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Spider genomes provide insight into composition, function and evolution of venom and silk (PXD000318) ↗AFDSI-PROJREF-316Copy ID

Striga hermonthica

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Mechanism of cooperative strigolactone perception by the MAX2 ubiquitin ligase–receptor–substrate complex (PXD068313) ↗AFDSI-PROJREF-317Copy ID

Struthio camelus

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: COL1A2 Barcoding: Bone Species Identification via Shotgun Proteomics (PXD045402) ↗AFDSI-PROJREF-46Copy ID

PRIDE: Low-invasive sampling method for taxonomic for the identification of archaeological and paleontological bone by proteomics of their collagens (PXD044039) ↗AFDSI-PROJREF-47Copy ID

PRIDE: Identification and functional characterization of proteins interacting with cohesin complex in yeast Saccharomyces cerevisiae. (PXD037034) ↗AFDSI-PROJREF-48Copy ID

PRIDE: Ostrich eggshell peptides survival into the Miocene (6-9 Ma) (PXD035872) ↗AFDSI-PROJREF-49Copy ID

PRIDE: Effect of soybean agglutinin on biological function of gut (PXD025751) ↗AFDSI-PROJREF-50Copy ID

PRIDE: A Fossil Protein Chimera; Difficulties in Discriminating Dinosaur Peptide Sequences From Modern Cross-Contamination (PXD006360) ↗AFDSI-PROJREF-51Copy ID

PRIDE: Reduced proteasome activity in the aging brain results in ribosome stoichiometry loss and aggregation (PXD016587) ↗AFDSI-PROJREF-52Copy ID

PRIDE: Mineral-bound ostrich eggshell peptides survive for up to 3.8 Ma in equatorial Africa (PXD003786) ↗AFDSI-PROJREF-53Copy ID

PRIDE: Shotgun Proteomics of Brachylophosaurus canadensis Blood Vessels (PXD001738) ↗AFDSI-PROJREF-54Copy ID

PRIDE: Fossil bone sequencing - Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry (PRD000085) ↗AFDSI-PROJREF-55Copy ID

Sus scrofa

PaxDb — real per-protein abundance

LOC100302368 (9823.ENSSSCP00000045861) — abundance 14250AFDSI-PROTEOMICS-451Copy ID

VIM (9823.ENSSSCP00000031624) — abundance 13773AFDSI-PROTEOMICS-452Copy ID

LOC110257905 (9823.ENSSSCP00000035484) — abundance 12658AFDSI-PROTEOMICS-453Copy ID

TMSB4X (9823.ENSSSCP00000028545) — abundance 12658AFDSI-PROTEOMICS-454Copy ID

RPLP1 (9823.ENSSSCP00000005345) — abundance 8828AFDSI-PROTEOMICS-455Copy ID

S100A6 (9823.ENSSSCP00000020154) — abundance 8199AFDSI-PROTEOMICS-456Copy ID

RPLP2 (9823.ENSSSCP00000052173) — abundance 7693AFDSI-PROTEOMICS-457Copy ID

ACTB (9823.ENSSSCP00000035521) — abundance 7370AFDSI-PROTEOMICS-458Copy ID

ANXA2 (9823.ENSSSCP00000031749) — abundance 7231AFDSI-PROTEOMICS-459Copy ID

ACTG1 (9823.ENSSSCP00000040911) — abundance 6398AFDSI-PROTEOMICS-460Copy ID

GAPDH (9823.ENSSSCP00000035519) — abundance 5715AFDSI-PROTEOMICS-461Copy ID

EEF1A1 (9823.ENSSSCP00000035282) — abundance 5375AFDSI-PROTEOMICS-462Copy ID

PPIA (9823.ENSSSCP00000017727) — abundance 5096AFDSI-PROTEOMICS-463Copy ID

NPM1 (9823.ENSSSCP00000027846) — abundance 5088AFDSI-PROTEOMICS-464Copy ID

LMNA (9823.ENSSSCP00000047557) — abundance 4888AFDSI-PROTEOMICS-465Copy ID

S100A4 (9823.ENSSSCP00000007012) — abundance 4725AFDSI-PROTEOMICS-466Copy ID

ANXA5 (9823.ENSSSCP00000009706) — abundance 4300AFDSI-PROTEOMICS-467Copy ID

ENO1 (9823.ENSSSCP00000047291) — abundance 4067AFDSI-PROTEOMICS-468Copy ID

RPS25 (9823.ENSSSCP00000016026) — abundance 4038AFDSI-PROTEOMICS-469Copy ID

FLNA (9823.ENSSSCP00000048388) — abundance 3901AFDSI-PROTEOMICS-470Copy ID

TAGLN (9823.ENSSSCP00000049288) — abundance 3698AFDSI-PROTEOMICS-471Copy ID

COL1A1 (9823.ENSSSCP00000066291) — abundance 3648AFDSI-PROTEOMICS-472Copy ID

TAGLN2 (9823.ENSSSCP00000006818) — abundance 3632AFDSI-PROTEOMICS-473Copy ID

HSPA8 (9823.ENSSSCP00000036002) — abundance 3583AFDSI-PROTEOMICS-474Copy ID

ANXA1 (9823.ENSSSCP00000005658) — abundance 3513AFDSI-PROTEOMICS-475Copy ID

PRDX1 (9823.ENSSSCP00000032967) — abundance 3500AFDSI-PROTEOMICS-476Copy ID

RPS28 (9823.ENSSSCP00000014450) — abundance 3483AFDSI-PROTEOMICS-477Copy ID

HSPA5 (9823.ENSSSCP00000055982) — abundance 3468AFDSI-PROTEOMICS-478Copy ID

RPS4X (9823.ENSSSCP00000066710) — abundance 3443AFDSI-PROTEOMICS-479Copy ID

MIF (9823.ENSSSCP00000010740) — abundance 3435AFDSI-PROTEOMICS-480Copy ID

SERPINH1 (9823.ENSSSCP00000034354) — abundance 3385AFDSI-PROTEOMICS-481Copy ID

H1-4 (9823.ENSSSCP00000037051) — abundance 3244AFDSI-PROTEOMICS-482Copy ID

RPL23 (9823.ENSSSCP00000039109) — abundance 3227AFDSI-PROTEOMICS-483Copy ID

RPSA (9823.ENSSSCP00000059243) — abundance 3226AFDSI-PROTEOMICS-484Copy ID

RPS8 (9823.ENSSSCP00000004246) — abundance 3177AFDSI-PROTEOMICS-485Copy ID

TPM4 (9823.ENSSSCP00000040331) — abundance 3144AFDSI-PROTEOMICS-486Copy ID

EEF2 (9823.ENSSSCP00000023888) — abundance 3053AFDSI-PROTEOMICS-487Copy ID

S100A10 (9823.ENSSSCP00000030365) — abundance 3039AFDSI-PROTEOMICS-488Copy ID

CLIC1 (9823.ENSSSCP00000050481) — abundance 2954AFDSI-PROTEOMICS-489Copy ID

CFL1 (9823.ENSSSCP00000028248) — abundance 2917AFDSI-PROTEOMICS-490Copy ID

RPL13 (9823.ENSSSCP00000027026) — abundance 2868AFDSI-PROTEOMICS-491Copy ID

RPL6 (9823.ENSSSCP00000053434) — abundance 2829AFDSI-PROTEOMICS-492Copy ID

YWHAZ (9823.ENSSSCP00000006472) — abundance 2821AFDSI-PROTEOMICS-493Copy ID

RPL18 (9823.ENSSSCP00000019602) — abundance 2817AFDSI-PROTEOMICS-494Copy ID

RPL27 (9823.ENSSSCP00000024028) — abundance 2732AFDSI-PROTEOMICS-495Copy ID

RPS6 (9823.ENSSSCP00000005557) — abundance 2619AFDSI-PROTEOMICS-496Copy ID

RPL34 (9823.ENSSSCP00000009753) — abundance 2545AFDSI-PROTEOMICS-497Copy ID

RPS3 (9823.ENSSSCP00000061901) — abundance 2523AFDSI-PROTEOMICS-498Copy ID

ARHGDIA (9823.ENSSSCP00000046156) — abundance 2493AFDSI-PROTEOMICS-499Copy ID

PFN1 (9823.ENSSSCP00000018967) — abundance 2486AFDSI-PROTEOMICS-500Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: 4D Smart DIA Quantitative Proteomic Analysis of Lysosomal Fractions Isolated from ASFV-Infected PAMs Following Bacterial Challenge (PXD082798) ↗AFDSI-PROJREF-463Copy ID

PRIDE: Proteomic Analysis of Porcine Small Intestinal Submucosa Before and After Decellularization (PXD079406) ↗AFDSI-PROJREF-318Copy ID

PRIDE: Proteomics of boar seminal plasma extracellular vesicles (PXD079300) ↗AFDSI-PROJREF-319Copy ID

PRIDE: LC-MS on porcine pancreatic remodeling (PXD077246) ↗AFDSI-PROJREF-320Copy ID

PRIDE: An Integrated Multi-omics Analysis Reveals PDCoV Hijacks the PPAR Signaling Network to Orchestrate Metabolic-Immune Dysregulation and Intestinal Injury in Piglets (PXD076809) ↗AFDSI-PROJREF-321Copy ID

PRIDE: Comparison of the reactivity of hypochlorous acid (HOCl) and hyposelenocyanous acid (HOSeCN) with elastase: role of amino acid modification and structural changes in loss of activity. (PXD075502) ↗AFDSI-PROJREF-322Copy ID

PRIDE: Pull-down experiment of Cdkn1a mRNA and its protein binding partners in wounds and homeostatic skin of porcine skin (PXD075222) ↗AFDSI-PROJREF-323Copy ID

PRIDE: Bulk proteomics of porcine skin excision injury at 15 minutes and 4 hours post wounding. (PXD075230) ↗AFDSI-PROJREF-324Copy ID

PRIDE: Molecular profiling of extracellular vesicles isolated from boar reproductive fluids (PXD074929) ↗AFDSI-PROJREF-325Copy ID

PRIDE: A porcine spectral assay library to quantify brain proteome by DIA-MS (PXD074603) ↗AFDSI-PROJREF-326Copy ID

PRIDE: Proteomic profiling of obesity-associated metabolic and immune changes in Göttingen minipigs (PXD074506) ↗AFDSI-PROJREF-327Copy ID

PRIDE: Conformational changes of shapeshifting protein G’e and immunoglobulin IgG probed by nanoESI ion mobility mass spectrometry. (PXD076256) ↗AFDSI-PROJREF-447Copy ID

PRIDE: Whale Müller glia create a permissive glial environment that supports retinal ganglion cell survival and neurite outgrowth (PXD082515) ↗AFDSI-PROJREF-460Copy ID

PRIDE: Investigation of pregnant pig plasma (PXD081874) ↗AFDSI-PROJREF-474Copy ID

PRIDE: Comparison of porcine heart chamber-specific protein in dECM (PXD076595) ↗AFDSI-PROJREF-482Copy ID

PRIDE: Annexin A2 facilitates Japanese encephalitis virus replication by regulating endocytosis and intracellular transport in PK15 cells (Co-IP proteomics dataset) (PXD081082) ↗AFDSI-PROJREF-485Copy ID

PRIDE: Palaeoproteomics deconvolution of physical and genetic collagen mixtures (PXD079630) ↗AFDSI-PROJREF-498Copy ID

Symbiodinium microadriaticum

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: The influence of symbiont identity on the proteomic and metabolomic responses of the model cnidarian Aiptasia to thermal stress (PXD055908) ↗AFDSI-PROJREF-448Copy ID

PRIDE: Proteomic approach to Anemonia sulcata and its symbiont Symbiodinium sp. as new source of potential biotechnological applications and climate change biomarkers (PXD043202) ↗AFDSI-PROJREF-449Copy ID

PRIDE: The proteomic response of the coral symbiont Symbiodinium microadriaticum to thermal and nutrient stress (PXD022821) ↗AFDSI-PROJREF-450Copy ID

Theileria parva

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Theileria parva Muguga (TpM) schizonts LC-MS/MS (PXD070746) ↗AFDSI-PROJREF-451Copy ID

PRIDE: BoLA-DRimmunopeptidomics in Theileria parva infected, bovine cell lines (PXD024053) ↗AFDSI-PROJREF-452Copy ID

PRIDE: NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T cell epitope predictions (PXD015240) ↗AFDSI-PROJREF-453Copy ID

PRIDE: Analysis of bovine leukocyte antigen (BoLA)-associated peptides by LC-MS (PXD008151) ↗AFDSI-PROJREF-454Copy ID

Urochloa decumbens

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Impact of drought stress at 40% of field capacity on the allelopathic potential of Cosmos sulphureus Cav under greenhouse experiment (PXD065296) ↗AFDSI-PROJREF-328Copy ID

Vigna unguiculata

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Regulation and physiological function of proteins for heat tolerance in cowpea (Vigna unguiculata) genotypes under controlled and field conditions (PXD035418) ↗AFDSI-PROJREF-56Copy ID

PRIDE: Protective effect of Vigna unguiculata extract against aging and neurodegeneration (PXD017716) ↗AFDSI-PROJREF-57Copy ID

PRIDE: Gel-free/label-free proteomic, biochemical and photosynthetic anaysis of cowpea resistance against Cowpea severe mosaic virus (PXD005906) ↗AFDSI-PROJREF-58Copy ID

PRIDE: Label-free Proteomics Reveals that Cowpea Severe Mosaic Virus Transiently Suppresses the Host Leaf Protein Accumulation During the Compatible Interaction with Cowpea (Vigna unguiculata [L.] Walp.) (PXD005025) ↗AFDSI-PROJREF-59Copy ID

Vigna unguiculata subsp. unguiculata

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: Regulation and physiological function of proteins for heat tolerance in cowpea (Vigna unguiculata) genotypes under controlled and field conditions (PXD035418) ↗AFDSI-PROJREF-455Copy ID

Xenopus laevis

PaxDb — real per-protein abundance

LOC100101274 (8355.Q5U4L0) — abundance 12707AFDSI-PROTEOMICS-1Copy ID

gapdh (8355.Q8AY70) — abundance 11048AFDSI-PROTEOMICS-2Copy ID

ppia (8355.Q8AVP8) — abundance 10964AFDSI-PROTEOMICS-3Copy ID

Gapdh.S (8355.Q7ZY52) — abundance 10324AFDSI-PROTEOMICS-4Copy ID

Vbis02 (8355.A0A1L8EXB4) — abundance 9950AFDSI-PROTEOMICS-5Copy ID

Serpina6.L (8355.A0A1L8F9K5) — abundance 8404AFDSI-PROTEOMICS-6Copy ID

A0A1L8HT50 (8355.A0A1L8HT50) — abundance 8215AFDSI-PROTEOMICS-7Copy ID

eno1 (8355.A0A1L8FLY7) — abundance 7884AFDSI-PROTEOMICS-8Copy ID

tpi1-2 (8355.A0A1L8FIG2) — abundance 7825AFDSI-PROTEOMICS-9Copy ID

A0A1L8EJR5 (8355.A0A1L8EJR5) — abundance 7476AFDSI-PROTEOMICS-10Copy ID

MGC82636 (8355.Q6GPT0) — abundance 6764AFDSI-PROTEOMICS-11Copy ID

Eno1.S (8355.A0A1L8FG49) — abundance 6208AFDSI-PROTEOMICS-12Copy ID

tpi1 (8355.A0A1L8FDX2) — abundance 6048AFDSI-PROTEOMICS-13Copy ID

actg1 (8355.A0A1L8EM44) — abundance 6017AFDSI-PROTEOMICS-14Copy ID

rps27a (8355.Q6GMC1) — abundance 5910AFDSI-PROTEOMICS-15Copy ID

aldoc (8355.Q9PSX0) — abundance 5874AFDSI-PROTEOMICS-16Copy ID

rps25 (8355.Q6DJJ1) — abundance 5691AFDSI-PROTEOMICS-17Copy ID

A0A1L8G5V1 (8355.A0A1L8G5V1) — abundance 5398AFDSI-PROTEOMICS-18Copy ID

PRDX2 (8355.G3GBS3) — abundance 5352AFDSI-PROTEOMICS-19Copy ID

grhpr.2 (8355.Q498I1) — abundance 5302AFDSI-PROTEOMICS-20Copy ID

actb (8355.A0A1L8EXC8) — abundance 5257AFDSI-PROTEOMICS-21Copy ID

rpl38 (8355.Q66KV2) — abundance 5241AFDSI-PROTEOMICS-22Copy ID

rps14 (8355.Q6PI76) — abundance 5177AFDSI-PROTEOMICS-23Copy ID

rpl13 (8355.Q6DJN5) — abundance 5172AFDSI-PROTEOMICS-24Copy ID

Eef1b2.L (8355.A0A1L8EWY3) — abundance 4806AFDSI-PROTEOMICS-25Copy ID

uba52 (8355.Q6GQF3) — abundance 4692AFDSI-PROTEOMICS-26Copy ID

vtga2 (8355.A0A1L8GLL5) — abundance 4637AFDSI-PROTEOMICS-27Copy ID

mdh1-2 (8355.A0A1L8G769) — abundance 4373AFDSI-PROTEOMICS-28Copy ID

A0A1L8ETE5 (8355.A0A1L8ETE5) — abundance 4311AFDSI-PROTEOMICS-29Copy ID

rps28p9 (8355.Q66KP7) — abundance 4277AFDSI-PROTEOMICS-30Copy ID

A0A310TLD7 (8355.A0A310TLD7) — abundance 4238AFDSI-PROTEOMICS-31Copy ID

sod1-2 (8355.A0A1L8HCL3) — abundance 4195AFDSI-PROTEOMICS-32Copy ID

rps20 (8355.A0A1L8FZ13) — abundance 4055AFDSI-PROTEOMICS-33Copy ID

Rpl7a.S (8355.A0A1L8F1B9) — abundance 3876AFDSI-PROTEOMICS-34Copy ID

rpl39 (8355.Q4FZP7) — abundance 3864AFDSI-PROTEOMICS-35Copy ID

rpl36 (8355.A0A1L8HMX5) — abundance 3784AFDSI-PROTEOMICS-36Copy ID

rps3a (8355.A0A1L8HLR2) — abundance 3677AFDSI-PROTEOMICS-37Copy ID

rpl8 (8355.A0A1L8H6H2) — abundance 3673AFDSI-PROTEOMICS-38Copy ID

cfl1 (8355.A0A1L8GCW3) — abundance 3652AFDSI-PROTEOMICS-39Copy ID

rpl27a (8355.Q7SZB2) — abundance 3620AFDSI-PROTEOMICS-40Copy ID

rps8 (8355.A0A1L8GFP2) — abundance 3611AFDSI-PROTEOMICS-41Copy ID

rpl22 (8355.A0A1L8FGH8) — abundance 3598AFDSI-PROTEOMICS-42Copy ID

rps23 (8355.Q6AZL9) — abundance 3520AFDSI-PROTEOMICS-43Copy ID

Vtgb1.L (8355.A0A1L8GLT4) — abundance 3478AFDSI-PROTEOMICS-44Copy ID

tktl2 (8355.Q9I8J7) — abundance 3474AFDSI-PROTEOMICS-45Copy ID

calm1 (8355.A0A1L8G5X8) — abundance 3414AFDSI-PROTEOMICS-46Copy ID

rpl19 (8355.A0A1L8ERX6) — abundance 3399AFDSI-PROTEOMICS-47Copy ID

eif5a (8355.Q7ZXG3) — abundance 3387AFDSI-PROTEOMICS-48Copy ID

A0A1L8HF43 (8355.A0A1L8HF43) — abundance 3314AFDSI-PROTEOMICS-49Copy ID

ldhb (8355.A0A1L8GQX2) — abundance 3248AFDSI-PROTEOMICS-50Copy ID

Project-level reference (metadata only; no per-protein identifications are hosted by this platform)

PRIDE: A dual-anchoring mechanism for the hemimethylated CG-guided histone ubiquitylation (PXD079072) ↗AFDSI-PROJREF-60Copy ID

PRIDE: Analysis of Zyxin's interactome and phosphosites in early Xenopus laevis development by Data-Dependent Acquisition proteomics (PXD071283) ↗AFDSI-PROJREF-61Copy ID

PRIDE: Analysis of Zyxin's interactome and phosphosites in early Xenopus laevis development by Data-Independent Acquisition proteomics (PXD071213) ↗AFDSI-PROJREF-62Copy ID

PRIDE: Proteomic of nuptial pads of Xenopus laevis (African clawed frog) (PXD071004) ↗AFDSI-PROJREF-63Copy ID

PRIDE: Greatwall depletion from Xenopus oocytes reveals a key role of the cyclin B/CDK1-PP2A-B55 balance in the coordination of meiotic events. (PXD068132) ↗AFDSI-PROJREF-64Copy ID

PRIDE: DNA polymerase kappa is the primary translesion synthesis polymerase for aldehyde ICLs (PXD066315) ↗AFDSI-PROJREF-65Copy ID

PRIDE: Deciphering the dynamic proteome of multiciliated cells (PXD064476) ↗AFDSI-PROJREF-66Copy ID

PRIDE: Subcellular Mass Spectrometry Reveals Proteome Remodeling in an Asymmetrically Dividing (Frog) Embryonic Stem Cell (PXD063566) ↗AFDSI-PROJREF-67Copy ID

PRIDE: Histone variant H2A.Z enhances histone and nucleosome dynamics (PXD062956) ↗AFDSI-PROJREF-68Copy ID

PRIDE: Live Electrophoresis-Correlative AI Democratizes Single-cell Mass Spectrometry Proteomics (PXD062702) ↗AFDSI-PROJREF-69Copy ID

PRIDE: ATM promotes reversed fork processing during DNA interstrand cross-link repair (PXD071242) ↗AFDSI-PROJREF-329Copy ID

PRIDE: Hydraplexing: Signal Amplification via Additive Fragment Ion Contributions from Multi-Tag Isobaric Labeling (PXD072028) ↗AFDSI-PROJREF-330Copy ID

PRIDE: Vertebrate skeletal tissue evolution: identifying the diversity of proteins in the calvaria bone of metamorphic Xenopus laevis (PXD074763) ↗AFDSI-PROJREF-483Copy ID

PRIDE: Reconstitution of lamin assembly on nuclear pore complex-containing membranes (PXD067048) ↗AFDSI-PROJREF-491Copy ID