A database of publications about African genetic resources and digital sequence information — real bibliographic metadata pulled from PubMed, with a durable link back to the source record. Full text is frequently paywalled even when the abstract/metadata is open, so this is a metadata catalog with an outbound link, not a hosted archive; this platform never claims to host or redistribute full text.
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Vulnerability of marine megafauna to global at-sea anthropogenic threats.
VanCompernolle M, Morris J, Calich HJ, Rodríguez JP, Marley SA, Pearce JR, Abrahms B, Abrantes K, Afonso AS, Aguilar A, Agyekumhene A, Akamatsu T, Åkesson S, Alawa NG, Alfaro-Shigueto J, Anderson RC, Anker-Nilssen T, Arata JA, Araujo G, Arostegui MC, Arrizabalaga H, Arrowsmith LM, Auger-Méthé M, Avila IC, Bailleul F, Barker J, Barlow DR, Barnett A, Barrios-Garrido H, Baylis AMM, Bearzi G, Bejder L, Belda EJ, Benson SR, Berumen ML, Bestley S, Bezerra NPA, Blaison AV, Boehme L, Bograd SJ, Abimbola BD, Bond ME, Borrell A, Bouchet PJ, Boveng P, Braulik G, Braun CD, Brodie S, Bugoni L, Bustamante C, Campana SE, Cárdenas-Alayza S, Carmichael RH, Carroll G, Carter MID, Ceia FR, Cerchio S, Ferreira LC, Chambault P, Chapple TK, Charvet P, Chavez EJ, Chevallier D, Chiaradia A, Chilvers BL, Cimino MA, Clark BL, Clarke CR, Clay TA, Cloyed CS, Cochran JEM, Collins T, Cortes E, Cuevas E, Curnick DJ, Dann P, de Bruyn PJN, de Vos A, Derville S, Dias MP, Diaz-Lopez B, Dodge KL, Dove ADM, Doyle TK, Drymon JM, Dudgeon CL, Dutton PH, Ellenberg U, Elwen SH, Emmerson L, Eniang EA, Espinoza M, Esteban N, Mul E, Fadely BS, Fayet AL, Feare C, Ferguson SH, Feyrer LJ, Finucci B, Florko KRN, Fontes J, Fortuna CM, Fossette S, Fouda L, Frere E, Fuentes MMPB, Gallagher AJ, Borboroglu PG, Garrigue C, Gauffier P, Gennari E, Genov T, Germanov ES, Giménez J, Godfrey MH, Godley BJ, Goldsworthy SD, Gollock M, Carman VG, Gownaris NJ, Grecian WJ, Guzman HM, Hamann M, Hammerschlag N, Hansen ES, Harris MP, Hastie G, Haulsee DE, Hazen EL, Heide-Jørgensen MP, Hieb EE, Higdon JW, Hindell MA, Hinke JT, Hoenner X, Hofmeyr GJG, Holmes BJ, Hoyt E, Huckstadt LA, Hussey NE, Huveneers C, Irvine LG, Jabado RW, Jacoby DMP, Jaeger A, Jagielski PM, Jessopp M, Jewell OJD, Alvarado DJ, Jordan LKB, Jorgensen SJ, Kahn B, Karamanlidis AA, Kato A, Keith-Diagne LW, Kiani MS, Kiszka JJ, Kock AA, Kopf RK, Kuhn C, Kyne PM, Laidre KL, Lana FO, Lander ME, Corre ML, Lee OA, Leeney RH, Levengood AL, Levenson JJ, Libertelli M, Liu KM, Mendilaharsu ML, Loveridge A, Lowe CG, Lynch HJ, Macena BCL, Mackay AI, Madrigal-Mesén J, Mallory ML, Mangel JC, Mansfield KL, March D, Marcoux M, Marsh H, Marshall AD, Mattern T, Maxwell SM, McGuire RL, McLeay L, McMahon CR, Methion S, Meyers EKM, Michelot C, Masere C, Minton G, Morales-Vela B, Mucientes G, Murua H, Nicoll MAC, Niella Y, Notarbartolo di Sciara G, Oppel S, Orgeret F, Oswald JN, Owen E, Pacoureau N, Paiva VH, Palacios DM, Panigada S, Papastamatiou YP, Parra GJ, Parsons SK, Patterson-Fraser DL, Peckham SH, Petersen SD, Pichegru L, Pierce SJ, Pipa T, Pirotta E, Pistorius P, Pollom RA, Prieto R, Prosdocimi L, Pütz K, Queiroz N, Quinn JL, Ramos JA, Raudino HC, Recalde-Salas A, Rees AF, Reina RD, Reisinger RR, Reynolds SD, Richardson AJ, Riddoch NG, Riet-Sapriza FG, Robbins JR, Robinson DP, Rodríguez A, Rogers TL, Rohner CA, Rojas-Cañizales D, Ruhomaun K, Kent CS, Sato K, Scales KL, Scheidat M, Schofield G, Serena F, Setyawan E, Shaffer SA, Shea BD, Shearer L, Sheaves M, Sherley RB, Shillinger GL, Shimada T, Silva MA, Skomal G, Smith RA, Smoothey AF, Soldo A, Southall EJ, Steinfurth A, Stewart DB, Stewart JD, Takahashi A, Tatayah V, Thalmann S, Thiebot JB, Tomás J, Torres LG, Trathan PN, Trillmich F, Ueda K, Vandeperre F, Vanstreels RET, Vedor M, Villegas-Amtmann S, Waller LJ, Waller M, Wanless S, Waples K, Watt CA, Wege M, Weir CR, Wells RS, Wensveen PJ, White TD, Whiting SD, Wiig Ø, Wildermann NE, Wiley DN, Williams JL, Williams RS, Wilson K, Witt MJ, Womersley FC, Yurkowski DJ, Zhang J, Costa DP, Duarte CM, Meekan MG, Harcourt R, Sims DW, Hays GC, Pattiaratchi C, Eguíluz VM, Sequeira AMM · Conserv Biol (2026)
Mauritius · DOI: 10.1111/cobi.70147
Marine megafauna species are affected by a wide range of anthropogenic threats. To evaluate the risk of such threats, species' vulnerability to each threat must first be determined. We build on the existing threats classification scheme and ranking system of the International Union for Conservation of Nature (IUCN) Red List of Threatened Species by assessing the vulnerability of 256 marine megafauna species to 23 at-sea threats. The threats we considered included individual fishing gear types, climate-change-related subthreats not previously assessed, and threats associated with coastal impacts and maritime disturbances. Our ratings resulted in 70 species having high vulnerability (v > 0.778 out of 1) to at least 1 threat, primarily drifting longlines, temperature extremes, or fixed gear. These 3 threats were also considered to have the most severe effects (i.e., steepest population declines). Overall, temperature extremes and plastics and other solid waste were rated as affecting the largest proportion of populations. Penguins, pinnipeds, and polar bears had the highest vulnerability to temperature extremes. Bony fishes had the highest vulnerability to drifting longlines and plastics and other solid waste; pelagic cetaceans to 4 maritime disturbance threats; elasmobranchs to 5 fishing threats; and flying birds to drifting longlines and 2 maritime disturbance threats. Sirenians and turtles had the highest vulnerability to at least one threat from all 4 categories. Despite not necessarily having severe effects for most taxonomic groups, temperature extremes were rated among the top threats for all taxa except bony fishes. The vulnerability scores we provide are an important first step in estimating the risk of threats to marine megafauna. Importantly, they help differentiate scope from severity, which is key to identifying threats that should be prioritized for mitigation.
Vulnerabilidad de la megafauna marina ante las amenazas antropogénicas globales en el mar VanCompernolle et al. Resumen Las especies de megafauna marina se ven afectadas por una amplia gama de amenazas antropogénicas. Para evaluar el riesgo de dichas amenazas, primero se debe determinar la vulnerabilidad de las especies a cada una de ellas. Nos basamos en el esquema de clasificación de amenazas y el sistema de clasificación existentes de la Lista Roja de Especies Amenazadas de la Unión Internacional para la Conservación de la Naturaleza (UICN) para evaluar la vulnerabilidad de 256 especies de megafauna marina ante 23 amenazas marítimas. Las amenazas que consideramos incluyeron tipos de pesquerías individuales, subamenazas relacionadas con el cambio climático sin evaluación previa y amenazas asociadas con impactos costeros y perturbaciones marítimas. Nuestras calificaciones dieron como resultado que 70 especies tenían una alta vulnerabilidad (v > 0.778 de 1) a al menos una amenaza, principalmente los palangres de deriva, las temperaturas extremas o las artes de pesca fijas. También se consideró que estas tres amenazas tenían los efectos más graves (i. e., las disminuciones más pronunciadas de la población). En general, se consideró que las temperaturas extremas y los plásticos y otros residuos sólidos afectaban a la mayor proporción de poblaciones. Los pingüinos, los pinnípedos y los osos polares fueron los más vulnerables a las temperaturas extremas; los peces óseos, los más vulnerables a los palangres a la deriva y a los plásticos y otros residuos sólidos; los cetáceos pelágicos, a cuatro amenazas de perturbación marítima; los elasmobranquios, a cinco amenazas relacionadas con la pesca; y las aves voladoras, a los palangres a la deriva y a dos amenazas de perturbación marítima. Los sirénidos y las tortugas fueron los más vulnerables a al menos una amenaza de las cuatro categorías. A pesar de no tener necesariamente efectos graves para la mayoría de los grupos taxonómicos, las temperaturas extremas se clasificaron entre las principales amenazas para todos los taxones, excepto los peces óseos. Las puntuaciones de vulnerabilidad que proporcionamos son un primer paso importante para estimar el riesgo de las amenazas para la megafauna marina. Es importante destacar que ayudan a diferenciar el alcance de la gravedad, lo cual es clave para identificar las amenazas que deben priorizarse para su mitigación.
The genome sequence of the Pink Pigeon, Nesoenas mayeri (Prévost, 1843).
Morales HE, van Oosterhout C, Whitford H, Tatayah V, Ruhomaun K, Groombridge JJ, Gilbert MTP, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics team, Tree of Life Core Informatics collective · Wellcome Open Res (2024)
Mauritius · DOI: 10.12688/wellcomeopenres.22471.2
We present a genome assembly from an individual female
Only One Percent of Important Shark and Ray Areas in the Western Indian Ocean Are Fully Protected From Fishing Pressure.
Cochran JEM, Charles R, Temple AJ, Kyne PM, García-Rodríguez E, Gonzalez-Pestana A, Batlle-Morera A, Mouton TL, Armstrong AO, Rohner CA, Coker DJ, Hardenstine RS, Kattan A, McIvor AJ, Peinemann VN, O'Toole KA, Palm L, Richardson EB, Akhilesh KV, Ali Abedi H, Almealla RK, Almojil D, Andrzejaczek S, Askin AN, Banerjee AA, Bargahi HR, Barnes AJ, Barteneva-Vitry S, Behzadi S, Bein A, Bennett RH, Bocchi F, Boldrocchi G, Braulik GT, Braun CD, Brighton E, Budd FKP, Bullock RW, Canovas Perez C, Carlisle AB, Carpenter M, Chapple TK, Chaúca I, Cliff G, Crochelet E, Cullain N, Curnick DJ, Daly R, de Necker L, Diamant S, Donati GFA, Ebert DA, Eid E, Elhassa IS, Elston C, Everett BI, Farrag MMS, Fassbender N, Fennessy ST, Fernando SMC, Finucci B, Flam AL, Gausman P, Gauthier ARG, Sreekanth GB, Gupta T, Hafeez M, Hagy BN, Haines JLA, Harris JL, Harvey-Carroll J, Hempson TN, Hilbourne ST, Hsu HH, Ibrahim ND, Jacoby DMP, Jaquemet S, Babu K K I, Karnad D, Kaunda-Arara B, Kizhakudan SJ, Kock AA, Koester A, Kuboja BN, Kuguru BL, Lea JSE, Mahadalle O, Manjebrayakath H, Mason-Parker C, Mateos-Molina D, Menon M, Moore ABM, Mourier J, Murra TS, Nakhawa AD, Nazurally N, Nelso LE, Nevill JEG, Olbers JM, Ostrovski RL, Peel LR, Perisic N, Peterson B, Pierce SJ, Pittman SJ, Rahangdale S, Rambahiniarison J, Rastgoo AR, Rezaie-Atagholipour M, Robinson DP, Samoilys MA, Sawers TJ, Scannell BJ, Schmidt JV, Silva IM, Silva L, Solonomenjanahary J, Spaet JLY, Stevens GMW, Strike EM, Thomas S, van Beuningen D, Venables SK, Vossgaetter L, Weideli OC, Williams ID, Williams CT, Willson AJ, Wilson L, Zareer IH, Zerr KM, Berumen ML, Jabado RW · Ecol Evol (2026)
Mauritius · DOI: 10.1002/ece3.72690
The Western Indian Ocean (WIO) is known for its high diversity of chondrichthyans (sharks, rays, and chimaeras). However, intense fishing pressure has led to severe population declines and local extinctions of several species. The Important Shark and Ray Area (ISRA) process is a collaborative, evidence-based approach used to identify critical habitat for chondrichthyans. We analysed ISRAs across the WIO to quantify the diversity of research methods used to identify them, evaluate spatial overlap with designated marine protected areas (MPAs), model the influence of several species- and jurisdiction-specific variables on ISRA delineation, and explore the importance of incorporating unpublished data into the delineation process. In total, 125 ISRAs (covering > 2.8 million km
Nano-Stimulated Immunity: Synthesis and Functionalization of CuS Induce Multilevel Defense Responses against Fusarium in Tomato (Solanum lycopersicum).
Qin L, Deng C, Boyjoo Y, Sharma S, Ashraf H, Wang M, Zhao L, Sabliov CM, Bhaw-Luximon A, Dimkpa CO, Wang Y, Chen S, White JC · J Agric Food Chem (2026)
Mauritius · DOI: 10.1021/acs.jafc.5c13527
This study investigated how doping-modified copper sulfide (CuS) micronanoparticles (MNPs) influence tomato resistance against fungal pathogens. Three cuboidal CuS MNPs─undoped (CuS), iron-doped (Fe-CuS), and cerium-doped (Ce-CuS)─were foliarly applied to
Severe and widespread coral reef damage during the 2014-2017 Global Coral Bleaching Event.
Eakin CM, Heron SF, Connolly SR, Devotta DA, Liu G, Geiger EF, De La Cour JL, Gomez AM, Skirving WJ, Baird AH, Cantin NE, Couch CS, Donner SD, Gilmour J, Gonzalez-Rivero M, Gudka M, Harrison HB, Hodgson G, Hoegh-Guldberg O, Hoey AS, Hoogenboom MO, Hughes TP, Johnson ME, Kerry JT, Kimura T, Mihaly J, Muñiz-Castillo AI, Obura DO, Pratchett MS, Rivera-Sosa A, Ross CL, Stein J, Thompson A, Torda G, Viehman TS, Walter CS, Wilson S, Marsh BL, Spady BL, Dyer N, Adam TC, Alcolado P, Alidoostsalimi M, Alidoostsalimi P, Alvarez-Filip L, Álvarez-Noriega M, Arias-González JE, Bahr KD, Barnes P, Barraza Sandoval JE, Baum JK, Bauman AG, Beger M, Berry K, Bessell-Browne P, Bigot L, Bonito V, Brodnicke OB, Burdick D, Burkepile DE, Burt AJ, Burt JA, Butler IR, Caldwell JM, Chancerelle Y, Chen CA, Cherh KL, Childress MJ, Coker DJ, Costa B, Coward G, Crabbe MJC, Dallison T, Dalton S, DeCarlo TM, Drury C, Drysdale I, Edwards CB, Eggertsen L, Elma E, Ennis RS, Evans RD, Eyal G, Fenner D, Figueroa-Zavala B, Fisch J, Fox MD, Gadoutsis E, Gilbert A, Halford AR, Heintz T, Hewlett J, Hobbs JA, Hoot WC, Houk P, Johnston L, Johnston MA, Kayanne H, Kennedy EV, Kikuchi RKP, Kloiber U, Koike H, Kramer KL, Kuo CY, Lang J, Lawrence A, Leadbeater A, Leão ZMAN, Lee JN, Lewis C, Lirman D, Longo GO, MacDonald C, Mallela J, Mangubhai S, da Silva IM, Mason-Parker C, McDonough V, McField M, Mello T, Miternique-Agathe C, Madi M, Moldzio S, Monroe AA, Montefalcone M, Moses KS, Mostafavi PG, Moura RL, Munasinghe CS, Mwaura J, Nakamura T, Nicet JB, Nuttall MF, Oliveira MDM, Oxenford HA, Pandolfi JM, Patankar V, Perez D, Perera N, Prabuning D, Precht W, Raj KD, Reimer JD, Richardson LE, Rotjan R, Ryan N, Salm R, Sandin SA, Schopmeyer S, Shedrawi G, Shokri MR, Smith JE, Smith K, Smith SR, Smith TB, Sommer B, Soto M, Suckoo R, Sykes H, Tagarino KA, Teoh M, Thai MQ, Toh TC, Tredinnick A, Tso A, Tyley H, Ussi AM, Vargas-Angel B, Vaterlaus C, Vermeij MJA, Vo ST, Voolstra CR, Wee HB, Weiler BA, Williams DE, Yahya SAS, Yeemin T, Ziegler M, Manzello DP · Nat Commun (2026)
Mauritius · DOI: 10.1038/s41467-025-67506-w
Ocean warming is increasing the frequency, extent, and severity of tropical-coral bleaching and mortality. During 2014-2017, marine heatwaves caused the Third Global Coral Bleaching Event. We analyze data from 15,066 reef surveys globally during 2014-2017. Across all surveyed reefs, 80% and 35% experienced moderate or greater (affecting >10% of corals) bleaching and mortality, respectively. We assess the global extent of coral bleaching and mortality by applying bleaching response curves calibrated from surveyed reefs to predict bleaching globally, based on comprehensive remote-sensing of heat stress. These models predict that 51% and 15% of the world's coral reefs suffered moderate or greater bleaching and mortality, respectively, during one or multiple years, surpassing damage from any prior global coral bleaching event. Our findings demonstrate that the impacts of ocean warming on coral reefs are accelerating, with the near certainty that ongoing warming will cause large-scale, possibly irreversible, degradation of these essential ecosystems. With heat stress levels during this event surpassing those observed previously, the National Oceanic and Atmospheric Administration developed more extreme Bleaching Alert levels that are now being used during the ongoing Fourth Global Coral Bleaching Event.
Coral Genetic Structure in the Western Indian Ocean Mirrors Ocean Circulation and Thermal Stress History.
Guillaume AS, Joost S, Curpen S, Dumur Neelayya D, Harree-Somah L, Sadasing O, Saponari L, Dale C, Barret L, Andrews N, Leckraz SK, François R, Seetapah V, Munusami V, Bacha Gian S, Jhangeer-Khan R, Mahoune T, Chumun PK, Poretti M, Berteaux-Lecellier V, Lecellier G, Selmoni O · Evol Appl (2026)
Mauritius · DOI: 10.1111/eva.70206
Global warming and rising sea temperatures are pushing many reef-building coral species towards extinction. As thermal tolerance in corals is partially heritable, identifying genes under thermal selection is critical for targeted biodiversity management. However, it remains unclear how large connectivity breaks (> 100 km of open sea) might affect the spread of adaptive alleles for different coral species in discontinuous reef networks such as the Western Indian Ocean (WIO). To address this, we applied a seascape genomics approach to model (i) population structure and (ii) thermal adaptive potentials for two keystone coral species,
Data science applications for non-communicable disease prevention and control in Africa: a systematic review protocol.
Okekunle AP, Olaiya MT, Olowoyo P, Ajuwon G, Kinengyere AA, Kumuthini J, Asowata OJ, Akpa OM, Fakunle A, Baichoo S, Odedina F, Hamdi Y, Agyemang C, Ovbiagele B, Owolabi M · Cardiovasc J Afr (2025)
Mauritius · DOI: 10.5830/CVJA-2025-085
This systematic review protocol describes the proposed method for evaluating evidence from original articles to understand the benefits, opportunities, and challenges of using data science for non-communicable disease (NCD) prevention and control in Africa.
Literature searches will be implemented in five scientific databases and one search engine using predefined keywords/ MeSH terms to identify relevant articles. At least two reviewers will independently screen, appraise, extract, and summarise data from eligible articles using predefined inclusion criteria.
This systematic review will consider primary studies from articles that applied data science methods (such as artificial intelligence, machine learning, and risk or prognosis model algorithms, among others) to address NCD prevention and control exclusively among Indigenous Africans.
Findings from this systematic review could serve as a roadmap to guide future initiatives to apply data science methods to revolutionise NCD prevention and control in Africa.
Randomised trial of Aureobasidium pullulans-produced beta 1,3-1,6-glucans in patients with Duchenne muscular dystrophy: favourable changes in gut microbiota and clinical outcomes indicating their potential in epigenetic manipulation.
Raghavan K, Dedeepiya VD, Yamamoto N, Ikewaki N, Iwasaki M, Dinassing A, Senthilkumar R, Preethy S, Abraham SJK · BMJ Nutr Prev Health (2025)
Mauritius · DOI: 10.1136/bmjnph-2023-000776
Duchenne muscular dystrophy (DMD) is an X-linked neuromuscular disorder that leads to increasing muscle weakening and early death. Steroids, the standard treatment of choice in slowing down disease progression, are plagued with adverse effects. Anti-inflammatory, antifibrotic effects and enhancement of muscle regeneration biomarkers after oral consumption of
Twenty-seven patients with DMD were included in the study (control (n=9), N-163 (n=18)). Whole-genome metagenomic sequencing was performed in pre-N-163 and post-N-163 intervention faecal samples of each of these participants.
After N-163 beta-glucan administration, the constitution of the gut microbiome in all the participants was modified to one with positive outcomes on health. There was an increase in butyrate-producing species such as
Beneficial reconstitution of the gut microbiome after Neu REFIX beta-glucan administration and its safety have been confirmed. These outcomes correlating with the anti-inflammatory, anti-fibrotic effects along with increase in dystrophin in skeletal muscle and plasma, reported earlier make us recommend further in-depth exploration on its role in epigenetic manipulation which when found encouraging might help other genetic diseases as well.
CTRI/2021/05/033346.
Microbiological safety and hygiene monitoring of coastal seawater at Northern public beaches of Mauritius and genetic characterization of human pathogenic Vibrio species.
Neetoo H, Hossen AM, Nazurally N, Ghoorah AW, Chuttur Y, Puchooa D, Ally NM, Bhoyroo V, Allam M, Ismail A, Chemben S, Mayghun F, Juggoo KV, Abdelshafy AM, Ruggoo A · PLOS Glob Public Health (2026)
Mauritius · DOI: 10.1371/journal.pgph.0006044
Northern public beaches are popular recreational and touristic destinations in Mauritius. However, rapid urbanization and coastal development in the region raise concerns about the microbial quality and safety of nearshore waters, which may deteriorate without effective surveillance and management. This could be exacerbated by the occurrence of marine, human pathogenic Vibrio, which may harbor genes conferring virulence and antimicrobial resistance. The aim of the study was thus to assess the microbiological safety and sanitary quality of Northern coastal seawater. The specific objectives were to (i) monitor the population of total Vibrio and hygiene indicator organisms over a ten-month period, and (ii) identify and genetically characterize any human pathogenic Vibrio isolates. Briefly, samples of seawater were collected at four public beaches (La Cuvette, Péreybère, Trou aux Biches and Mont Choisy) at different sampling points over a ten-month period (March - December) and subjected to microbiological and physicochemical analyses. Representative Vibrio isolates were subsequently analyzed by Whole Genome Sequencing for taxonomic identification and to reveal any virulence and antimicrobial resistance genes. Coliform counts varied significantly (P < 0.001) over the 10-month period. Mean coliform counts remained within the permissible limit (< 1000 CFU/100 ml) during most months, except for September and October. Vibrio counts were also higher during the period of September-December, compared to all other months. Three V. alginolyticus and one V. parahaemolyticus isolates were identified. V. parahaemolyticus ST 1498 was found to harbor genes imparting virulence (tdh + /trh+) and resistance to various antimicrobials (tetracycline, penicillin and β-lactam antibiotics). Findings of this exploratory study highlight the presence of human vibrios of suspected pathogenic potential, that warrants further investigation to understand their associated public health risks.