Xenopus laevis
African clawed frog
taxon 8355Indigenous / local names
- Gewone platanna (af) Wikidata
- Gewone Platanna (afr) GBIF
- Plathander (afr) GBIF
- Lentsweta le tlwaelehileng (sot) GBIF
- Segwagwa sa metsing se tlwaelegileng (tsn) GBIF
- Udlela oqhelekileyo (xho) GBIF
- Idwi elijwayelekilea (zu) Wikidata
- Idwi elijwayelekile (zul) GBIF
Genome browser
The assembly file for Xenopus laevishasn't finished reaching the Hub yet — check back shortly.
Sequence records
genome (fasta)
mirroredOrigin: hub
Source: NCBI GCF_017654675.1 · View at source ↗
publiccc0AFDSI-SEQ-1GoaT: Chromosome assembly · 2.74 Gb · scaffold N50 155,250,555 · 18 chromosomes · View at source ↗
Publicly accessible — no request needed.
Proteins (20)
sprtn — 565 aa
rad50.S — 1311 aa
neil3 — 616 aa
lsm14a-a — 471 aa
clasp1b — 1456 aa
nemp1b — 434 aa
xiap — 488 aa
ube2d4 — 147 aa
htra1 — 459 aa
nemp1a — 434 aa
transcriptome (fasta)
mirroredOrigin: hub
Source: ENA AB023815 · View at source ↗
publiccc0AFDSI-SEQ-45Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
Proteomics (external sources)
PaxDb — real per-protein abundance
LOC100101274 (8355.Q5U4L0) — abundance 12707AFDSI-PROTEOMICS-1
gapdh (8355.Q8AY70) — abundance 11048AFDSI-PROTEOMICS-2
ppia (8355.Q8AVP8) — abundance 10964AFDSI-PROTEOMICS-3
Gapdh.S (8355.Q7ZY52) — abundance 10324AFDSI-PROTEOMICS-4
Vbis02 (8355.A0A1L8EXB4) — abundance 9950AFDSI-PROTEOMICS-5
Serpina6.L (8355.A0A1L8F9K5) — abundance 8404AFDSI-PROTEOMICS-6
A0A1L8HT50 (8355.A0A1L8HT50) — abundance 8215AFDSI-PROTEOMICS-7
eno1 (8355.A0A1L8FLY7) — abundance 7884AFDSI-PROTEOMICS-8
tpi1-2 (8355.A0A1L8FIG2) — abundance 7825AFDSI-PROTEOMICS-9
A0A1L8EJR5 (8355.A0A1L8EJR5) — abundance 7476AFDSI-PROTEOMICS-10
PRIDE— project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
A dual-anchoring mechanism for the hemimethylated CG-guided histone ubiquitylation (PXD079072) ↗AFDSI-PROJREF-60
Analysis of Zyxin's interactome and phosphosites in early Xenopus laevis development by Data-Dependent Acquisition proteomics (PXD071283) ↗AFDSI-PROJREF-61
Analysis of Zyxin's interactome and phosphosites in early Xenopus laevis development by Data-Independent Acquisition proteomics (PXD071213) ↗AFDSI-PROJREF-62
Greatwall depletion from Xenopus oocytes reveals a key role of the cyclin B/CDK1-PP2A-B55 balance in the coordination of meiotic events. (PXD068132) ↗AFDSI-PROJREF-64
DNA polymerase kappa is the primary translesion synthesis polymerase for aldehyde ICLs (PXD066315) ↗AFDSI-PROJREF-65
Subcellular Mass Spectrometry Reveals Proteome Remodeling in an Asymmetrically Dividing (Frog) Embryonic Stem Cell (PXD063566) ↗AFDSI-PROJREF-67
Live Electrophoresis-Correlative AI Democratizes Single-cell Mass Spectrometry Proteomics (PXD062702) ↗AFDSI-PROJREF-69
Chemical Profiles (external sources)
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL228043 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 10300.0 nMAFDSI-METABOLOMICS-67
ChEMBL: CHEMBL27130 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; EC50 nMAFDSI-METABOLOMICS-45
ChEMBL: CHEMBL29024 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; EC50 nMAFDSI-METABOLOMICS-46
ChEMBL: CHEMBL28472 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; EC50 nMAFDSI-METABOLOMICS-47
ChEMBL: CHEMBL15013 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-48
ChEMBL: CHEMBL39187 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-49
ChEMBL: CHEMBL43190 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-50
ChEMBL: CHEMBL40140 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-51
ChEMBL: CHEMBL39903 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-52
ChEMBL: CHEMBL42867 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-53
ChEMBL: MELATONIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-54
ChEMBL: CHEMBL39998 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-55
ChEMBL: CHEMBL37514 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-56
ChEMBL: CHEMBL53824 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; EC50 0.7 nMAFDSI-METABOLOMICS-57
ChEMBL: CHEMBL345090 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; EC50 132.0 nMAFDSI-METABOLOMICS-58
ChEMBL: CHEMBL143547 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; EC50 470.0 nMAFDSI-METABOLOMICS-59
ChEMBL: CHEMBL143125 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; EC50 789.0 nMAFDSI-METABOLOMICS-60
ChEMBL: CHEMBL143074 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; EC50 128.0 nMAFDSI-METABOLOMICS-61
ChEMBL: CHEMBL428169 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1000.0 nMAFDSI-METABOLOMICS-62
ChEMBL: CHEMBL219755 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 500.0 nMAFDSI-METABOLOMICS-63
ChEMBL: CHEMBL424754 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 300.0 nMAFDSI-METABOLOMICS-64
ChEMBL: CHEMBL436918 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2000.0 nMAFDSI-METABOLOMICS-65
ChEMBL: CHEMBL372401 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50AFDSI-METABOLOMICS-66
Metabolic Profiles (external sources)
KEGG: KEGG genome-based metabolic profile (xla) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-19
MetaboLights: Diversity in DNA: Identification of methylated deoxyadenosines in higher eukaryotes (View at source ↗)AFDSI-METABPROF-9
Field & Specimen Imaging
camera_trap at South Africa · Source: GBIF 5938098882 (View at source ↗)AFDSI-IMG-106
camera_trap at South Africa · Source: GBIF 5938656457 (View at source ↗)AFDSI-IMG-107
camera_trap at South Africa · Source: GBIF 6129850357 (View at source ↗)AFDSI-IMG-108
camera_trap at South Africa · Source: GBIF 6129878566 (View at source ↗)AFDSI-IMG-109
camera_trap at South Africa · Source: GBIF 6129911136 (View at source ↗)AFDSI-IMG-110
Cellular & Molecular Imaging (external sources)
BioImage Archive: Modular, portable, high-end microscopy inside and outside the lab (View on source archive ↗)AFDSI-CELL-20
BioImage Archive: The increase of Cyclin A/cdk activity and of FAM122A-dependent inhibition of PP2A-B55 are key events to trigger mitosis (View on source archive ↗)AFDSI-CELL-21
BioImage Archive: The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples (View on source archive ↗)AFDSI-CELL-22
BioImage Archive: (View on source archive ↗)AFDSI-CELL-23
BioImage Archive: Phosphorylation of Xenopus M18BP1 governs centromeric localization and CENP-A nucleosome assembly (EMBO Reports) (View on source archive ↗)AFDSI-CELL-15
BioImage Archive: Prickle and Ror modulate Dishevelled-Vangl interaction to regulate non-canonical Wnt signaling during convergent extension in Xenopus (View on source archive ↗)AFDSI-CELL-16
BioImage Archive: Prickle and Ror modulate Dishevelled-Vangl interaction to regulate non-canonical Wnt signaling during convergent extension in Xenopus (View on source archive ↗)AFDSI-CELL-17
BioImage Archive: Palmitoylated Importin Alpha Regulates Mitotic Spindle Orientation Through Interaction with NuMA (View on source archive ↗)AFDSI-CELL-18
BioImage Archive: Single-cell morphodynamics predict cell fate decisions during mucociliary epithelial differentiation (View on source archive ↗)AFDSI-CELL-19
Geographic range (Africa)
4,861 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
