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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
A strain of Treponema pallidum. Facts recorded for the species, such as pathogen–reservoir associations, are shown here too.
yaws treponeme
taxon 168Also known as: Treponema pallidum subsp. pertenue (Castellani 1905) Norris et al. 2026, Treponema pertenue, Treponema pertenue (Castellani 1905) Castellani and Chalmers 1910 (Approved Lists 1980)
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded in Africa and elsewhere. 113 of 256 GBIF records (44%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
39 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_003076575.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Lake Manyara
Sequencing: Illumina MiSeq · SeqMan NGen, LASERGENE v. v4.1.0 · 169x coverage
Released: 2018-05-01 · Submitted by: University of Tuebingen
publiccc0AFDSI-SEQ-5150 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
39 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866605.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Ngorongoro Conservation Area
Sequencing: Illumina HiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 157.69x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5151 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
39 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866725.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Serengeti National Park
Sequencing: Illumina MiSeq; Illumina HiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 135.31x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5153 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
39 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866705.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina MiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 122.7x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5154 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_042253945.1 · View at source ↗
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina MiSeq; Illumina HiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 13x coverage
Released: 2024-09-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5156 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
37 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866765.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina MiSeq; Illumina HiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 30.24x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5157 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
38 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_042247485.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Serengeti National Park
Sequencing: Illumina MiSeq; Illumina HiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 116x coverage
Released: 2024-09-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5158 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
39 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_042254855.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina MiSeq; Illumina HiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 46x coverage
Released: 2024-09-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5160 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_043949975.1 · View at source ↗
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina MiSeq; Illumina HiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 9x coverage
Released: 2024-10-26 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5161 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_043950015.1 · View at source ↗
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina MiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 9x coverage
Released: 2024-10-27 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5163 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
37 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866585.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Ruaha National Park
Sequencing: Illumina HiSeq; Illumina MiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 2274.49x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5818 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
39 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866685.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina HiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 325.44x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5820 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_042251535.1 · View at source ↗
Collection: Tanzania: Serengeti National Park
Sequencing: Illumina MiSeq; Illumina HiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 28x coverage
Released: 2024-09-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5821 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
38 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_042246795.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina HiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 30x coverage
Released: 2024-09-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-6481 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
38 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_042249225.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Ruaha National Park
Sequencing: Illumina MiSeq; Illumina HiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 93x coverage
Released: 2024-09-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-6482 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
39 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866565.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina HiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 19.91x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5149 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
protein 11376 — 177 aa
Origin: hub
38 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866645.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Serengeti National Park
Sequencing: Illumina MiSeq; Illumina HiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 131.07x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5152 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
38 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866745.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina MiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 3185.6x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5155 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
40 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_042248475.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Serengeti National Park
Sequencing: Illumina MiSeq; Illumina HiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 34x coverage
Released: 2024-09-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5159 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_043949985.1 · View at source ↗
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina MiSeq; Illumina HiSeq · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 8x coverage
Released: 2024-10-26 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5162 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
39 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_029866665.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Lake Manyara National Park
Sequencing: Illumina HiSeq; Sanger · SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 · 435.35x coverage
Released: 2023-04-25 · Submitted by: Masaryk University
publiccc0AFDSI-SEQ-5819 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
pLDDT confidence: 91.6
Auto-synced from AlphaFold DB AF-P17915-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20843-V2pLDDT confidence: 91.6
Auto-synced from AlphaFold DB AF-P17915-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20842-V1BioImage Archive: Label free imaging reveals that cellular physiology is encoded in bacterial community architecture (View on source archive ↗)AFDSI-CELL-7836
BioImage Archive: Reference raw BioImaging dataset to assess the phenotypic trait diversity of bryophytes within the family Scapaniaceae (View on source archive ↗)AFDSI-CELL-7499
BioImage Archive: The Legionella phosphocholinase AnkX modulates IMPDH2 regulation and cytoophidia dynamics (View on source archive ↗)AFDSI-CELL-7500
BioImage Archive: Estimating phenotypic traits with morphometry from 16 specimens of thallose liverworts of biological soil crusts collected in Southern Sweden and Germany (View on source archive ↗)AFDSI-CELL-7501
BioImage Archive: An Rhs effector uses distinct target cell functions to intoxicate bacterial and fungal competitors (View on source archive ↗)AFDSI-CELL-7502
BioImage Archive: A bench-top Dark-Root device built with LEGO® bricks enables a non-invasive plant root development analysis in soil conditions mirroring nature (View on source archive ↗)AFDSI-CELL-7503
BioImage Archive: The European Reference Genome Atlas - COPO submission (View on source archive ↗)AFDSI-CELL-7504
113 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5160
File: GCF_042254855.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20224MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6482
File: GCF_042249225.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20223MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5159
File: GCF_042248475.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20222MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5158
File: GCF_042247485.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20221MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6481
File: GCF_042246795.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20220