Arabidopsis thaliana
thale cress
taxon 3702Also known as: Arabis thaliana
Indigenous / local names
- Arabidopsis thaliana (ig) Wikidata ↗
Genome browser
Sequence records
genome (fasta)
mirroredOrigin: hub
2 downloads
First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI GCA_946409825.1 · View at source ↗
Sequencing: PacBio Sequel II · Hifiasm v0.16.1 · 112x coverage
publiccc0AFDSI-SEQ-173GoaT: Chromosome assembly · 0.09 Gb · scaffold N50 23,403,063 · 6 chromosomes · View at source ↗
Publicly accessible — no request needed.
transcriptome (fasta)
mirroredOrigin: hub
0 downloads
First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI QS393945.1 · View at source ↗
publiccc0AFDSI-SEQ-560Publicly accessible — no request needed.
genome (fasta)
mirroredOrigin: hub
1 download
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900233925.1 · View at source ↗
Sequencing: PacBio RSII · Canu · 55x coverage
publiccc0AFDSI-SEQ-821GoaT: Chromosome assembly · 0.14 Gb · scaffold N50 26,777,645 · 5 chromosomes · View at source ↗
Publicly accessible — no request needed.
genome (fasta)
mirroredOrigin: hub
1 download
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900233955.1 · View at source ↗
Sequencing: PacBio RSII · Canu · 13x coverage
publiccc0AFDSI-SEQ-822GoaT: Chromosome assembly · 0.14 Gb · scaffold N50 26,777,645 · 5 chromosomes · View at source ↗
Publicly accessible — no request needed.
AlphaFold DB proteome: UP000006548 ↗
Proteomics (external sources)
PaxDb — real per-protein abundance
rbcL (3702.O03042) — abundance 33351AFDSI-PROTEOMICS-101
psbB (3702.P56777) — abundance 11353AFDSI-PROTEOMICS-102
RCA (3702.P10896) — abundance 10653AFDSI-PROTEOMICS-103
psbD (3702.P56761) — abundance 9199AFDSI-PROTEOMICS-104
F24B9.25 (3702.P59259) — abundance 6693AFDSI-PROTEOMICS-105
atpB (3702.P19366) — abundance 5301AFDSI-PROTEOMICS-106
psbA (3702.P83755) — abundance 5286AFDSI-PROTEOMICS-107
psbC (3702.P56778) — abundance 5120AFDSI-PROTEOMICS-108
DRT112 (3702.P42699) — abundance 4925AFDSI-PROTEOMICS-109
APX1 (3702.Q05431) — abundance 4793AFDSI-PROTEOMICS-110
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Phage depolymerase modulates virulence and biofilm in hypervirulent Klebsiella pneumoniae by CPS-mediated suppression of type 3 fimbriae (PXD080233) ↗AFDSI-PROJREF-91
A STRUBBELIG-NHL3 cell surface receptor complex mediates the response to cellulose deficiency in Arabidopsis (PXD079577) ↗AFDSI-PROJREF-92
Spatial Proteomics in Arabidopsis Nuclei Sheds Light on Gene Expression Regulators in Plant Basal Immunity (PXD078376) ↗AFDSI-PROJREF-93
Mapping Architecture of Protein complexes in Arabidopsis using XL-MS (Histone H2B turboID) (PXD078284) ↗AFDSI-PROJREF-94
LC-MSMS analysis of crocus sativus at different floral developmental stage. (PXD076029) ↗AFDSI-PROJREF-96
Sucrose-Activated TOR and phyA Signaling Alleviates Shade-Mediated Inhibition of Leaf Development in Arabidopsis (PXD075951) ↗AFDSI-PROJREF-97
A versatile inducible plant model system for dissecting p53 function and discovering novel interaction networks (PXD075858) ↗AFDSI-PROJREF-98
Shedding light on plant proteolysis: genetically encoded fluorescent sensors as tools for profiling protease activities (PXD075809) ↗AFDSI-PROJREF-99
Chemical Profiles (external sources)
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL300343 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 58900.0 nMAFDSI-METABOLOMICS-166
ChEMBL: CHEMBL61025 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 100.0 p.p.m.AFDSI-METABOLOMICS-167
ChEMBL: CHEMBL58689 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 100.0 p.p.m.AFDSI-METABOLOMICS-168
ChEMBL: CHEMBL58341 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 309000.0 nMAFDSI-METABOLOMICS-169
ChEMBL: CHEMBL293269 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 287000.0 nMAFDSI-METABOLOMICS-170
ChEMBL: CHEMBL293152 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 111000.0 nMAFDSI-METABOLOMICS-171
ChEMBL: CHEMBL294209 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 84700.0 nMAFDSI-METABOLOMICS-172
ChEMBL: CHEMBL60580 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 33000.0 nMAFDSI-METABOLOMICS-173
ChEMBL: CHEMBL58352 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 55.36 p.p.m.AFDSI-METABOLOMICS-174
ChEMBL: CHEMBL57654 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 55.38 p.p.m.AFDSI-METABOLOMICS-175
ChEMBL: CHEMBL3138416 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 100000.0 nMAFDSI-METABOLOMICS-176
ChEMBL: CHEMBL3138308 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 nMAFDSI-METABOLOMICS-177
ChEMBL: CHEMBL3137957 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 100000.0 nMAFDSI-METABOLOMICS-178
ChEMBL: CHEMBL2069130 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 28.0 nMAFDSI-METABOLOMICS-179
ChEMBL: CHEMBL3138270 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 100000.0 nMAFDSI-METABOLOMICS-180
ChEMBL: CHEMBL3138393 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 100000.0 nMAFDSI-METABOLOMICS-181
ChEMBL: CHEMBL3137954 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 38540.0 nMAFDSI-METABOLOMICS-182
ChEMBL: CHEMBL3138314 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 100000.0 nMAFDSI-METABOLOMICS-183
ChEMBL: CHEMBL3138499 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 8000.0 nMAFDSI-METABOLOMICS-184
ChEMBL: CHEMBL3138271 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 100.0 nMAFDSI-METABOLOMICS-185
ChEMBL: CHEMBL96533 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1096.48 nMAFDSI-METABOLOMICS-186
ChEMBL: (+)-ABSCISIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 977.24 nMAFDSI-METABOLOMICS-187
ChEMBL: CHEMBL497531 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; I50 2.5 ppmAFDSI-METABOLOMICS-188
ChEMBL: PYRABACTIN B (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2500.0 nMAFDSI-METABOLOMICS-189
ChEMBL: CHEMBL199619 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 90.9 %AFDSI-METABOLOMICS-190
ChEMBL: CHEMBL371869 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 94.0 %AFDSI-METABOLOMICS-191
ChEMBL: CHEMBL199709 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 170.0 nMAFDSI-METABOLOMICS-192
ChEMBL: CHEMBL210878 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 140.0 nMAFDSI-METABOLOMICS-193
ChEMBL: CHEMBL516921 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 70.0 nMAFDSI-METABOLOMICS-194
ChEMBL: CHEMBL481608 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 250.0 nMAFDSI-METABOLOMICS-195
ChEMBL: CHEMBL479653 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 260.0 nMAFDSI-METABOLOMICS-196
ChEMBL: CHEMBL520926 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 320.0 nMAFDSI-METABOLOMICS-197
ChEMBL: CHEMBL481199 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 440.0 nMAFDSI-METABOLOMICS-198
ChEMBL: CHEMBL480049 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 480.0 nMAFDSI-METABOLOMICS-199
ChEMBL: CHEMBL481622 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 550.0 nMAFDSI-METABOLOMICS-200
ChEMBL: CHEMBL516750 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 650.0 nMAFDSI-METABOLOMICS-201
ChEMBL: CHEMBL480259 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 700.0 nMAFDSI-METABOLOMICS-202
ChEMBL: CHEMBL516767 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 800.0 nMAFDSI-METABOLOMICS-203
Metabolic Profiles (external sources)
MetaboLights: Piriformospora indica stimulates root metabolism of Arabidopsis thaliana (View at source ↗)AFDSI-METABPROF-29
MetaboLights: Metabolomic profiles in short day, before bolting, single leaf analysis, Arabidopsis thaliana (View at source ↗)AFDSI-METABPROF-30
MetaboLights: Metabolomic profiles in long day, before bolting, single leaf analysis, Arabidopsis thaliana (View at source ↗)AFDSI-METABPROF-31
MetaboLights: Metabolomic profiles in long day, after bolting, single leaf analysis, Arabidopsis thaliana (View at source ↗)AFDSI-METABPROF-27
MetaboLights: Metabolomic profiles in short day, after bolting, single leaf analysis, Arabidopsis thaliana (View at source ↗)AFDSI-METABPROF-28
KEGG: KEGG genome-based metabolic profile (ath) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-94
Cellular & Molecular Imaging (external sources)
IDR: Diffusion-mediated HEI10 coarsening explains meiotic crossover positioning in Arabidopsis (View on source archive ↗)AFDSI-CELL-25
IDR: Regulation of Meristem Morphogenesis by Cell Wall Synthases in Arabidopsis. (View on source archive ↗)AFDSI-CELL-26
IDR: Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy (View on source archive ↗)AFDSI-CELL-27
BioImage Archive: Confocal fluorescence microscopy of mCherry-tagged ATG8E in root cells of trappc8 Arabidopsis thaliana (wild-type and atg5 seedlings as control). (View on source archive ↗)AFDSI-CELL-104
BioImage Archive: Tonoplast organization in the rhizodermis of the Arabidopsis thaliana root tip: effect of root position on the surface vs. inside agar medium. (View on source archive ↗)AFDSI-CELL-105
BioImage Archive: An AGO10:miR165/6 module regulates meristem activity and xylem development in the Arabidopsis root (View on source archive ↗)AFDSI-CELL-106
BioImage Archive: ino Arabidopsis ovule atlas: A 3D digital cell atlas of ino ovules in Arabidopsis with cellular and tissue resolution. (View on source archive ↗)AFDSI-CELL-107
BioImage Archive: Transmission electron microscopy (TEM) images of root cells of trappc8-1 and wild-type Arabidopsis thaliana seedlings (View on source archive ↗)AFDSI-CELL-108
BioImage Archive: Ct inoculation on At roots (View on source archive ↗)AFDSI-CELL-109
BioImage Archive: Ct inoculation on At roots (View on source archive ↗)AFDSI-CELL-110
Geographic range (Africa)
1,010 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.