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Sorghum bicolor

sorghum

taxon 4558

Indigenous / local names

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Sequence records

genome (fasta)

mirrored

Origin: hub

Source: NCBI GCF_000003195.3 · View at source ↗

publiccc0AFDSI-SEQ-4

GoaT: Scaffold assembly · 0.67 Gb · scaffold N50 32,201,306 · View at source ↗

Publicly accessible — no request needed.

Proteins (50)

OMT3 374 aa

protein 394 362 aa

CYP73A33 501 aa

rbcL 476 aa

FEN1-A 380 aa

psbA 353 aa

ndhK 227 aa

TPS1 541 aa

protein 401 201 aa

TPS2 545 aa

transcriptome (fasta)

mirrored

Origin: hub

Source: NCBI NM_001426215.1 · View at source ↗

publiccc0AFDSI-SEQ-42

Publicly accessible — no request needed.

Proteomics (external sources)

PRIDE— project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)

Early regulatory networks driving somatic embryogenesis in Saccharum spp. L. revealed by time-resolved proteomics (PXD068502) ↗AFDSI-PROJREF-36

Impact of drought stress at 40% of field capacity on the allelopathic potential of Cosmos sulphureus Cav under greenhouse experiment (PXD065296) ↗AFDSI-PROJREF-37

Response of Sorghum bicolor to salt stress (PXD058939) ↗AFDSI-PROJREF-38

Sorghum seed proteome by 4D-DIA (PXD056775) ↗AFDSI-PROJREF-39

Proteomic dataset of two contrasting sorghum genotypes to drought, heat and combined drought and heat stress (PXD052255) ↗AFDSI-PROJREF-40

Functional annotation of proteins for signaling network inference in non-model species (PXD037601) ↗AFDSI-PROJREF-41

Sorghum brewing SWATH-MS proteomics (PXD034981) ↗AFDSI-PROJREF-42

Reprogramming of sorghum proteome in response to sugarcane aphid infestation (PXD029691) ↗AFDSI-PROJREF-43

Confirmation of plant viral proteins and identification of specific viral strains by nanoLC-ESI-Q-TOF using single-leaf-tissue samples (PXD022456) ↗AFDSI-PROJREF-44

Heat stress triggers protein secretion into the extracellular matrix of sorghum cell suspension cultures (PXD021536) ↗AFDSI-PROJREF-45

Chemical Profiles (external sources)

ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.

ChEMBL: CHEMBL226517 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 30.0 %AFDSI-METABOLOMICS-32

ChEMBL: CHEMBL226518 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-33

ChEMBL: CHEMBL225990 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-34

ChEMBL: CHEMBL225934 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 30.0 %AFDSI-METABOLOMICS-35

ChEMBL: CHEMBL225933 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-36

ChEMBL: CHEMBL225932 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-37

ChEMBL: CHEMBL225931 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-38

ChEMBL: CHEMBL225881 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-39

ChEMBL: CHEMBL2287973 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Kd 650.0 nMAFDSI-METABOLOMICS-40

ChEMBL: CHEMBL2287976 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Kd 3400.0 nMAFDSI-METABOLOMICS-41

ChEMBL: CHEMBL2287980 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Kd 940.0 nMAFDSI-METABOLOMICS-42

ChEMBL: CHEMBL2287970 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Kd 630.0 nMAFDSI-METABOLOMICS-43

Metabolic Profiles (external sources)

KEGG: KEGG genome-based metabolic profile (sbi) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-17

MetaboLights: Differential analysis of physicochemical properties and small molecule metabolites in glutinous and non-glutinous sorghum (View at source ↗)AFDSI-METABPROF-6

MetaboLights: Metabolomic and Transcriptomic Analysis of Drought Resistance Mechanisms in Sorghum Varieties (View at source ↗)AFDSI-METABPROF-7

MetaboLights: Untargeted LC–MS metabolomics analysis of sorghum root exudates under drought stress (View at source ↗)AFDSI-METABPROF-8

MetaboLights: Extracts from sweet sorghum (Sorghum bicolor), a feedstock for biorefining, suppressed proliferation and elevated apoptosis in human colon cancer stem cells via suppression of Wnt/beta-catenin signaling pathway (View at source ↗)AFDSI-METABPROF-5

Protein Structures

OMT3 — v1

pLDDT confidence: 91.6

Auto-synced from AlphaFold DB AF-A8QW53-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-239-V1

protein 394 — v1

pLDDT confidence: 88.9

Auto-synced from AlphaFold DB AF-P84516-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-240-V1

CYP73A33 — v1

pLDDT confidence: 95.3

Auto-synced from AlphaFold DB AF-Q94IP1-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-241-V1

rbcL — v1

pLDDT confidence: 97.1

Auto-synced from AlphaFold DB AF-A1E9T2-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-242-V1

FEN1-A — v1

pLDDT confidence: 88.4

Auto-synced from AlphaFold DB AF-C5YUK3-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-243-V1

Field & Specimen Imaging

camera_trap at South Africa · Source: GBIF 6235031038 (View at source ↗)AFDSI-IMG-91

camera_trap at Egypt · Source: GBIF 6236150964 (View at source ↗)AFDSI-IMG-92

camera_trap at South Africa · Source: GBIF 6422712960 (View at source ↗)AFDSI-IMG-93

camera_trap at South Sudan · Source: GBIF 6470583815 (View at source ↗)AFDSI-IMG-94

camera_trap at Cameroon · Source: GBIF 6399007896 (View at source ↗)AFDSI-IMG-95

Cellular & Molecular Imaging (external sources)

BioImage Archive: Experimental Data for CombPlex Paper: "Escalating High-dimensional Imaging using Combinatorial Channel Multiplexing and Deep Learning" (View on source archive ↗)AFDSI-CELL-11

BioImage Archive: Darwin Tree of Life - NHM samples image catalogue (View on source archive ↗)AFDSI-CELL-12

Geographic range (Africa)

99,815 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.