Sorghum bicolor
sorghum
taxon 4558Indigenous / local names
- Sorghum (af) Wikidata
- Wildegraansorghum (afr) GBIF
- ማሽላ (am) Wikidata
- Dawa (ha) Wikidata
- Abantoko (hau) GBIF
- Sorghum bicolor (ig) Wikidata
- Mtama (sw) Wikidata
Genome browser
Sequence records
genome (fasta)
mirroredOrigin: hub
Source: NCBI GCF_000003195.3 · View at source ↗
publiccc0AFDSI-SEQ-4GoaT: Scaffold assembly · 0.67 Gb · scaffold N50 32,201,306 · View at source ↗
Publicly accessible — no request needed.
Proteins (50)
OMT3 — 374 aa
protein 394 — 362 aa
CYP73A33 — 501 aa
rbcL — 476 aa
FEN1-A — 380 aa
psbA — 353 aa
ndhK — 227 aa
TPS1 — 541 aa
protein 401 — 201 aa
TPS2 — 545 aa
transcriptome (fasta)
mirroredOrigin: hub
Source: NCBI NM_001426215.1 · View at source ↗
publiccc0AFDSI-SEQ-42Publicly accessible — no request needed.
Proteomics (external sources)
PRIDE— project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Early regulatory networks driving somatic embryogenesis in Saccharum spp. L. revealed by time-resolved proteomics (PXD068502) ↗AFDSI-PROJREF-36
Impact of drought stress at 40% of field capacity on the allelopathic potential of Cosmos sulphureus Cav under greenhouse experiment (PXD065296) ↗AFDSI-PROJREF-37
Proteomic dataset of two contrasting sorghum genotypes to drought, heat and combined drought and heat stress (PXD052255) ↗AFDSI-PROJREF-40
Functional annotation of proteins for signaling network inference in non-model species (PXD037601) ↗AFDSI-PROJREF-41
Reprogramming of sorghum proteome in response to sugarcane aphid infestation (PXD029691) ↗AFDSI-PROJREF-43
Confirmation of plant viral proteins and identification of specific viral strains by nanoLC-ESI-Q-TOF using single-leaf-tissue samples (PXD022456) ↗AFDSI-PROJREF-44
Heat stress triggers protein secretion into the extracellular matrix of sorghum cell suspension cultures (PXD021536) ↗AFDSI-PROJREF-45
Chemical Profiles (external sources)
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL226517 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 30.0 %AFDSI-METABOLOMICS-32
ChEMBL: CHEMBL226518 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-33
ChEMBL: CHEMBL225990 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-34
ChEMBL: CHEMBL225934 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 30.0 %AFDSI-METABOLOMICS-35
ChEMBL: CHEMBL225933 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-36
ChEMBL: CHEMBL225932 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-37
ChEMBL: CHEMBL225931 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-38
ChEMBL: CHEMBL225881 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-39
ChEMBL: CHEMBL2287973 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Kd 650.0 nMAFDSI-METABOLOMICS-40
ChEMBL: CHEMBL2287976 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Kd 3400.0 nMAFDSI-METABOLOMICS-41
ChEMBL: CHEMBL2287980 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Kd 940.0 nMAFDSI-METABOLOMICS-42
ChEMBL: CHEMBL2287970 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Kd 630.0 nMAFDSI-METABOLOMICS-43
Metabolic Profiles (external sources)
KEGG: KEGG genome-based metabolic profile (sbi) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-17
MetaboLights: Differential analysis of physicochemical properties and small molecule metabolites in glutinous and non-glutinous sorghum (View at source ↗)AFDSI-METABPROF-6
MetaboLights: Metabolomic and Transcriptomic Analysis of Drought Resistance Mechanisms in Sorghum Varieties (View at source ↗)AFDSI-METABPROF-7
MetaboLights: Untargeted LC–MS metabolomics analysis of sorghum root exudates under drought stress (View at source ↗)AFDSI-METABPROF-8
MetaboLights: Extracts from sweet sorghum (Sorghum bicolor), a feedstock for biorefining, suppressed proliferation and elevated apoptosis in human colon cancer stem cells via suppression of Wnt/beta-catenin signaling pathway (View at source ↗)AFDSI-METABPROF-5
Protein Structures
OMT3 — v1
pLDDT confidence: 91.6
Auto-synced from AlphaFold DB AF-A8QW53-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-239-V1protein 394 — v1
pLDDT confidence: 88.9
Auto-synced from AlphaFold DB AF-P84516-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-240-V1CYP73A33 — v1
pLDDT confidence: 95.3
Auto-synced from AlphaFold DB AF-Q94IP1-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-241-V1rbcL — v1
pLDDT confidence: 97.1
Auto-synced from AlphaFold DB AF-A1E9T2-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-242-V1FEN1-A — v1
pLDDT confidence: 88.4
Auto-synced from AlphaFold DB AF-C5YUK3-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-243-V1Field & Specimen Imaging
camera_trap at South Africa · Source: GBIF 6235031038 (View at source ↗)AFDSI-IMG-91
camera_trap at Egypt · Source: GBIF 6236150964 (View at source ↗)AFDSI-IMG-92
camera_trap at South Africa · Source: GBIF 6422712960 (View at source ↗)AFDSI-IMG-93
camera_trap at South Sudan · Source: GBIF 6470583815 (View at source ↗)AFDSI-IMG-94
camera_trap at Cameroon · Source: GBIF 6399007896 (View at source ↗)AFDSI-IMG-95
Cellular & Molecular Imaging (external sources)
BioImage Archive: Experimental Data for CombPlex Paper: "Escalating High-dimensional Imaging using Combinatorial Channel Multiplexing and Deep Learning" (View on source archive ↗)AFDSI-CELL-11
BioImage Archive: Darwin Tree of Life - NHM samples image catalogue (View on source archive ↗)AFDSI-CELL-12
Geographic range (Africa)
99,815 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
