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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
cucumber
taxon 3659Not yet assessed
Occurrence records: Recorded mostly outside Africa. 348 of 27,053 GBIF records (1%) are from Africa (checked 10/9/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
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First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_016161775.1 · View at source ↗
Collection: Zambia: Central
Sequencing: PacBio Sequel · Celera Assembler v. SEP-2018 · 52x coverage
Released: 2020-12-22 · Submitted by: Chinese Academy of Agricultural Sciences
publiccc0AFDSI-SEQ-916 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZM · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.24 Gb · scaffold N50 30,253,139 · 7 chromosomes · View at source ↗
Publicly accessible — no request needed.
rbcL — 475 aa
protein 5843 — 725 aa
SRBP1 — 160 aa
protein 5845 — 587 aa
ETR1 — 740 aa
DNAJ1 — 413 aa
psbA — 353 aa
psaC — 81 aa
protein 5850 — 292 aa
psaD — 207 aa
Origin: hub
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First synced: 9/3/2026 · Last updated: 9/3/2026
Source: NCBI NM_001280754.1 · View at source ↗
Released: 2013-07-22
publiccc0AFDSI-SEQ-1025 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
AlphaFold DB proteome: UP000029981 ↗
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Impact of drought stress at 40% of field capacity on the allelopathic potential of Cosmos sulphureus Cav under greenhouse experiment (PXD065296) ↗AFDSI-PROJREF-368
Proteomic analysis of the role of RALF34 small signaling peptides in the regulation of cucumber (Cucumis sativus) root development (PXD037725) ↗AFDSI-PROJREF-369
Melatonin promotes chilling tolerance of cucumber seedlings by regulating antioxidant systems and relieving photoinhibition (PXD029134) ↗AFDSI-PROJREF-370
H2S regulation the metabolism of cucumber in response to salt-stress through transcriptome and proteome analysis (PXD020642) ↗AFDSI-PROJREF-371
Proteomic Analysis Reveals Key Proteins Involved in Ethylene-Induced Adventitious Root Development in Cucumber (Cucumis sativus L.) (PXD016444) ↗AFDSI-PROJREF-372
Cucumber mosaic virus resistance: Comparative proteomics of contrasting Cucumis sativus cultivars after long-term infection (PXD015088) ↗AFDSI-PROJREF-373
Analysis of protein regulation in cucumber leaves after Corynespora cassiicola inoculation: a proteomic approach (PXD012903) ↗AFDSI-PROJREF-374
Comparative proteomic analysis provides novel insights into the complex responses to Pseudoperonospora cubensis infection of cucumber (Cucumis sativus L.) (PXD010844) ↗AFDSI-PROJREF-375
Proteomic analysis of cucumber (Cucumis sativus) fruit peel in response to pre-storage cold acclimation (PXD008551) ↗AFDSI-PROJREF-376
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL226517 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 60.0 %AFDSI-METABOLOMICS-912
ChEMBL: CHEMBL226517 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 60.0 %AFDSI-METABOLOMICS-911
ChEMBL: CHEMBL226518 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 60.0 %AFDSI-METABOLOMICS-913
ChEMBL: CHEMBL226518 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 60.0 %AFDSI-METABOLOMICS-914
ChEMBL: CHEMBL225990 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-916
ChEMBL: CHEMBL225934 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-918
ChEMBL: CHEMBL225933 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-919
ChEMBL: CHEMBL225932 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-921
ChEMBL: CHEMBL225931 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %
MetaboLights: Metabolomic and transcriptomic investigations reveal the responses of cucumber leaves exposed to polystyrene nanoplastics (PSNPs) (View at source ↗)AFDSI-METABPROF-138
KEGG: KEGG genome-based metabolic profile (csv) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-153
pLDDT confidence: 88.8
Auto-synced from AlphaFold DB AF-A0A0A0LL04-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-9152-V2pLDDT confidence: 75.1
Auto-synced from AlphaFold DB AF-A0A0A0LGF5-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-9140-V2pLDDT confidence: 92.9
Auto-synced from AlphaFold DB AF-A0A0A0KFL1-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-9124-V2pLDDT confidence: 92.3
Auto-synced from AlphaFold DB AF-A0A0A0KFN9-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-9126-V2pLDDT confidence: 88.6
Auto-synced from AlphaFold DB AF-A0A0A0KH50-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-9128-V2herbarium at Togo · Source: GBIF 4066472510 (View at source ↗)AFDSI-IMG-15059
herbarium at Central African Republic · Source: GBIF 1421197334 (View at source ↗)AFDSI-IMG-15060
herbarium at Central African Republic · Source: GBIF 4850489507 (View at source ↗)AFDSI-IMG-15061
herbarium at Seychelles · Source: GBIF 2610078099 (View at source ↗)AFDSI-IMG-15062
herbarium at Liberia · Source: GBIF 4897539131 (View at source ↗)AFDSI-IMG-15063
camera_trap at Seychelles · Source: GBIF 6441339843 (View at source ↗)AFDSI-IMG-14935
camera_trap at Morocco · Source: GBIF 6131010642 (View at source ↗)AFDSI-IMG-14936
camera_trap at Madagascar · Source: GBIF 3747087344 (View at source ↗)AFDSI-IMG-14937
camera_trap at Central African Republic · Source: GBIF 3948983913 (View at source ↗)AFDSI-IMG-14939
camera_trap at Central African Republic · Source: GBIF 5109132312 (View at source ↗)AFDSI-IMG-14941
CIL: Daniel J. Geduld (2011) CIL:39018, Cucumis sativus, plant cell, cucumber peel. CIL. Dataset (View on source archive ↗)AFDSI-CELL-7591
395 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
Genomes are often recorded at strain level. These entries belong to this species.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-916
File: GCA_016161775.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20887ChEMBL: CHEMBL225881 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 30.0 %AFDSI-METABOLOMICS-926
ChEMBL: ACIFLUORFEN-METHYL (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 390.0AFDSI-METABOLOMICS-927
ChEMBL: CHEMBL2270643 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 292.0AFDSI-METABOLOMICS-929
ChEMBL: CHEMBL2040681 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Drug uptake 0.022 %AFDSI-METABOLOMICS-931
ChEMBL: CHEMBL225990 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-915
ChEMBL: CHEMBL225934 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-917
ChEMBL: CHEMBL225933 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-920
ChEMBL: CHEMBL225932 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-922
ChEMBL: CHEMBL225931 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-923
ChEMBL: CHEMBL225881 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 30.0 %AFDSI-METABOLOMICS-925
ChEMBL: ACIFLUORFEN-METHYL (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 390.0AFDSI-METABOLOMICS-928
ChEMBL: CHEMBL2270643 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 292.0AFDSI-METABOLOMICS-930
ChEMBL: CHEMBL2040681 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Drug uptake 0.022 %AFDSI-METABOLOMICS-932