Cucumis sativus
cucumber
taxon 3659Indigenous / local names
- Komkommer (af) Wikidata ↗
- ኪያር (am) Wikidata ↗
- Cucumber (Cucumis sativus) (ig) Wikidata ↗
- kitsaotsao (mg) Wikidata ↗
- Konkombure (rw) Wikidata ↗
Genome browser
Sequence records
genome (fasta)
mirroredOrigin: hub
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First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_016161775.1 · View at source ↗
Sequencing: PacBio Sequel · Celera Assembler v. SEP-2018 · 52x coverage
publiccc0AFDSI-SEQ-916GoaT: Chromosome assembly · 0.24 Gb · scaffold N50 30,253,139 · 7 chromosomes · View at source ↗
Publicly accessible — no request needed.
transcriptome (fasta)
mirroredOrigin: hub
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First synced: 9/3/2026 · Last updated: 9/3/2026
Source: NCBI NM_001280754.1 · View at source ↗
Released: 2013-07-22
publiccc0AFDSI-SEQ-1025Publicly accessible — no request needed.
AlphaFold DB proteome: UP000029981 ↗
Proteomics (external sources)
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Impact of drought stress at 40% of field capacity on the allelopathic potential of Cosmos sulphureus Cav under greenhouse experiment (PXD065296) ↗AFDSI-PROJREF-368
Proteomic analysis of the role of RALF34 small signaling peptides in the regulation of cucumber (Cucumis sativus) root development (PXD037725) ↗AFDSI-PROJREF-369
Melatonin promotes chilling tolerance of cucumber seedlings by regulating antioxidant systems and relieving photoinhibition (PXD029134) ↗AFDSI-PROJREF-370
H2S regulation the metabolism of cucumber in response to salt-stress through transcriptome and proteome analysis (PXD020642) ↗AFDSI-PROJREF-371
Proteomic Analysis Reveals Key Proteins Involved in Ethylene-Induced Adventitious Root Development in Cucumber (Cucumis sativus L.) (PXD016444) ↗AFDSI-PROJREF-372
Cucumber mosaic virus resistance: Comparative proteomics of contrasting Cucumis sativus cultivars after long-term infection (PXD015088) ↗AFDSI-PROJREF-373
Analysis of protein regulation in cucumber leaves after Corynespora cassiicola inoculation: a proteomic approach (PXD012903) ↗AFDSI-PROJREF-374
Comparative proteomic analysis provides novel insights into the complex responses to Pseudoperonospora cubensis infection of cucumber (Cucumis sativus L.) (PXD010844) ↗AFDSI-PROJREF-375
Proteomic analysis of cucumber (Cucumis sativus) fruit peel in response to pre-storage cold acclimation (PXD008551) ↗AFDSI-PROJREF-376
Chemical Profiles (external sources)
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL226517 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 60.0 %AFDSI-METABOLOMICS-912
ChEMBL: CHEMBL226517 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 60.0 %AFDSI-METABOLOMICS-911
ChEMBL: CHEMBL226518 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 60.0 %AFDSI-METABOLOMICS-913
ChEMBL: CHEMBL226518 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 60.0 %AFDSI-METABOLOMICS-914
ChEMBL: CHEMBL225990 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-916
ChEMBL: CHEMBL225934 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-918
ChEMBL: CHEMBL225933 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-919
ChEMBL: CHEMBL225932 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-921
ChEMBL: CHEMBL225931 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-924
ChEMBL: CHEMBL225881 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 30.0 %AFDSI-METABOLOMICS-926
ChEMBL: ACIFLUORFEN-METHYL (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 390.0AFDSI-METABOLOMICS-927
ChEMBL: CHEMBL2270643 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 292.0AFDSI-METABOLOMICS-929
ChEMBL: CHEMBL2040681 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Drug uptake 0.022 %AFDSI-METABOLOMICS-931
ChEMBL: CHEMBL225990 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-915
ChEMBL: CHEMBL225934 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-917
ChEMBL: CHEMBL225933 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-920
ChEMBL: CHEMBL225932 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-922
ChEMBL: CHEMBL225931 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 0.0 %AFDSI-METABOLOMICS-923
ChEMBL: CHEMBL225881 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 30.0 %AFDSI-METABOLOMICS-925
ChEMBL: ACIFLUORFEN-METHYL (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 390.0AFDSI-METABOLOMICS-928
ChEMBL: CHEMBL2270643 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 292.0AFDSI-METABOLOMICS-930
ChEMBL: CHEMBL2040681 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Drug uptake 0.022 %AFDSI-METABOLOMICS-932
Metabolic Profiles (external sources)
KEGG: KEGG genome-based metabolic profile (csv) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-153
MetaboLights: Metabolomic and transcriptomic investigations reveal the responses of cucumber leaves exposed to polystyrene nanoplastics (PSNPs) (View at source ↗)AFDSI-METABPROF-138
Geographic range (Africa)
348 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.