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chicken
taxon 9031Also known as: Gallus gallus domesticus, Phasianus gallus
Introduced
Occurrence records: Recorded mostly outside Africa. 1,189 of 300,029 GBIF records (0%) are from Africa (checked 10/9/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
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First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI GCA_055689475.1 · View at source ↗
Collection: South Africa: Limpopo · Sex: female
Sequencing: PacBio Sequel; PacBio; Illumina NovaSeq · YAHS v. 2025-08-11; HiFiasm v. 2025-05-21 · 63x coverage
Released: 2026-03-05 · Submitted by: African Biogenome Project
publiccc0AFDSI-SEQ-407 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 1.05 Gb · scaffold N50 90,861,225 · 41 chromosomes · View at source ↗
Publicly accessible — no request needed.
TESC — 214 aa
SLC7A2 — 654 aa
DISP3 — 1338 aa
CARNS1 — 930 aa
PARP3 — 526 aa
CENPS — 139 aa
CARNMT1 — 449 aa
DSCAM — 2034 aa
CFAP65 — 1775 aa
PACSIN2 — 448 aa
Origin: hub
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First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI NM_001006488.2 · View at source ↗
Released: 2005-01-12
publiccc0AFDSI-SEQ-610 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
PaxDb — real per-protein abundance
HBA1 (9031.ENSGALP00000050043) — abundance 21189AFDSI-PROTEOMICS-351
OVAL (9031.ENSGALP00000036403) — abundance 20858AFDSI-PROTEOMICS-352
TMSB4X (9031.ENSGALP00000040654) — abundance 17363AFDSI-PROTEOMICS-353
ALB (9031.ENSGALP00000044604) — abundance 15597AFDSI-PROTEOMICS-354
TF (9031.ENSGALP00000010405) — abundance 13773AFDSI-PROTEOMICS-355
RPL39L (9031.ENSGALP00000038282) — abundance 11271AFDSI-PROTEOMICS-356
LYZ (9031.ENSGALP00000016177) — abundance 9287AFDSI-PROTEOMICS-357
APOV1 (9031.ENSGALP00000024373) — abundance 8859AFDSI-PROTEOMICS-358
GAPDH (9031.ENSGALP00000063325) — abundance 8850AFDSI-PROTEOMICS-359
APOA1 (9031.ENSGALP00000011510) — abundance 8344AFDSI-PROTEOMICS-360
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Multi-Omics profiling reveals immunometabolic adaptations underlying disease resilience in indigenous Lueyang Silky Fowl compared to White Leghorns (PXD077559) ↗AFDSI-PROJREF-172
Proton Transfer Charge Reduction Enables Isobaric Labeling-Based Proteoform Quantification of Overlapping Signals in Top-Down Mass Spectrometry (PXD074730) ↗AFDSI-PROJREF-173
Proteomic remodeling of the chicken spleen during chicken astrovirus infection reveals coordinated interferon activation and stromal restructuring (PXD074601) ↗AFDSI-PROJREF-174
Proteomic of YsEVs from Unfertile and Fertilized Chicken Chicken YsEVs (PXD069777) ↗AFDSI-PROJREF-176
Meat quality changes as measured by proteomic responses in chicken muscle after a diet with or without fibre and with or without space restrictions. (PXD069586) ↗AFDSI-PROJREF-177
Integrative multi-omics analysis of dietary fibre-induced modulations in the composition and function of chicken caecal microbiota (PXD068444) ↗AFDSI-PROJREF-178
Identification and characterization of the zebra finch (Taeniopygia guttata) sperm proteome (PXD067397) ↗AFDSI-PROJREF-179
Identification of RNA-binding protein interactors of duck lncrna (lnc455) using Multiple Oligo-assisted RNA Pulldown with Hybridization followed by Mass Spectrometry (MORPH-MS) (PXD067094) ↗AFDSI-PROJREF-180
GeLC-MS/MS analysis of hen egg vitelline membrane from freshly-laid eggs and eggs stored for 28 days at 4°C and 20°C (PXD066675) ↗AFDSI-PROJREF-181
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: METHOTREXATE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; I / E100 1.0AFDSI-METABOLOMICS-324
ChEMBL: CHEMBL273834 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; I / E100 3.5AFDSI-METABOLOMICS-325
ChEMBL: CHEMBL418165 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; I / E100 1.4AFDSI-METABOLOMICS-326
ChEMBL: TRIMETHOPRIM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 750000.0 nMAFDSI-METABOLOMICS-327
ChEMBL: CHEMBL320596 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 350000.0 nMAFDSI-METABOLOMICS-328
ChEMBL: CHEMBL418347 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 22000.0 nMAFDSI-METABOLOMICS-329
ChEMBL: CHEMBL57582 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Log 1/C 5.25AFDSI-METABOLOMICS-330
ChEMBL: CHEMBL18912 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Log 1/C 4.34AFDSI-METABOLOMICS-331
ChEMBL: DIAVERIDINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Log 1/C 4.46
MetaboLights: Microbiomics combined metabolomics reveals Akkermansia modulating chicken gut microenvironment to protect from gamma coronavirus infection (View at source ↗)AFDSI-METABPROF-47
MetaboLights: Relationships between digestive efficiency and metabolomic profiles of serum and intestinal contents in chickens (View at source ↗)AFDSI-METABPROF-48
MetaboLights: In Vitro and In Vivo Metabolomic Profiling after Infection with Virulent Newcastle Disease Virus (View at source ↗)AFDSI-METABPROF-49
MetaboLights: Holo omic investigation of host and microbe in broiler chicken (HoloFood Trial 1/2/3) (View at source ↗)AFDSI-METABPROF-50
MetaboLights: Multi-Omics profiling reveals immunometabolic adaptations underlying disease resilience in indigenous Lueyang Silky Fowl compared to White Leghorns (View at source ↗)AFDSI-METABPROF-51
MetaboLights: Metabolomics reveals stage-specific internal quality deterioration and distinct metabolic changes in egg albumen and yolk during storage (View at source ↗)AFDSI-METABPROF-179
KEGG: KEGG genome-based metabolic profile (gga) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-108
pLDDT confidence: 87.5
Auto-synced from AlphaFold DB AF-E1BSW7-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-5182-V2pLDDT confidence: 97.5
Auto-synced from AlphaFold DB AF-P02112-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-5195-V2pLDDT confidence: 89.5
Auto-synced from AlphaFold DB AF-O57424-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-12053-V2pLDDT confidence: 84.1
Auto-synced from AlphaFold DB AF-O13154-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-5187-V2pLDDT confidence: 73.0
Auto-synced from AlphaFold DB AF-P02845-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-12055-V2camera_trap at Congo, Democratic Republic of the · Source: GBIF 6133250797 (View at source ↗)AFDSI-IMG-1865
camera_trap at Kenya · Source: GBIF 6130642752 (View at source ↗)AFDSI-IMG-1857
camera_trap at Nigeria · Source: GBIF 6130841080 (View at source ↗)AFDSI-IMG-1861
camera_trap at Nigeria · Source: GBIF 6130841080 (View at source ↗)AFDSI-IMG-1862
camera_trap at South Africa · Source: GBIF 6131663528 (View at source ↗)AFDSI-IMG-1863
camera_trap at Gambia · Source: GBIF 6147413126 (View at source ↗)AFDSI-IMG-1866
camera_trap at Ethiopia · Source: GBIF 6159305863 (View at source ↗)AFDSI-IMG-1867
camera_trap at Ethiopia · Source: GBIF 6159305863 (View at source ↗)AFDSI-IMG-1868
camera_trap at South Africa · Source: GBIF 6159614729 (View at source ↗)AFDSI-IMG-1869
camera_trap at Nigeria · Source: GBIF 6163348968 (View at source ↗)AFDSI-IMG-4265
IDR: The mesoSPIM initiative – open-source light-sheet microscopes for imaging cleared tissue (View on source archive ↗)AFDSI-CELL-32
BioImage Archive: Time-Lapse Imaging of Early Chick Embryo Development ex ovo (View on source archive ↗)AFDSI-CELL-403
BioImage Archive: Development of a shortwave infrared (SWIR) sinuscope for the detection of cerebrospinal fluid (CSF) leaks. (View on source archive ↗)AFDSI-CELL-404
BioImage Archive: Source Data for "A low-level Cdkn1c/p57kip2 expression in spinal progenitors drives the transition from proliferative to neurogenic modes of division" - Mida et al. (View on source archive ↗)AFDSI-CELL-405
BioImage Archive: A 3D molecular atlas of the chick embryonic heart (View on source archive ↗)AFDSI-CELL-406
BioImage Archive: (View on source archive ↗)AFDSI-CELL-407
CIL: Hans Ris (2010) CIL:10426, Gallus gallus, erythrocyte. CIL. Dataset (View on source archive ↗)AFDSI-CELL-7637
CIL: Peter Gillespie (2012) CIL:40628, Gallus gallus, cochlear inner hair cell. CIL. Dataset (View on source archive ↗)AFDSI-CELL-7627
CIL: Hans Ris (2010) CIL:10418, Gallus gallus, erythrocyte. CIL. Dataset (View on source archive ↗)AFDSI-CELL-7628
CIL: Hans Ris (2010) CIL:10425, Gallus gallus, erythrocyte. CIL. Dataset (View on source archive ↗)AFDSI-CELL-7629
1,257 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A real, citation-backed link between this species and a documented pathogen or wildlife reservoir host — see the Pathogen-Reservoir page (under One Health) for the full pilot list.
Documented pathogen associated with this species: Klebsiella pneumoniae Cosmopolitan
Klebsiella pneumoniae strain (KP411) recovered from the stool samples of poultry (Gallus gallus)
Evidence: Valiatti TB, Cayô R, Santos FF, Bessa-Neto FO, Brandão Silva RG, Veiga R, de Nazaré Miranda Bahia M, Guerra LMGD, Pignatari ACC, de Oliveira Souza C, Brasiliense DM, Gales AC, Guarani Network. Genomic Analysis of Klebsiella pneumoniae ST258 Strain Coproducing KPC-2 and CTX-M-14 Isolated from Poultry in the Brazilian Amazon Region. Antibiotics (Basel) (2022). https://doi.org/10.3390/antibiotics11121835. PMID: 36551493. AFDSI-ASSOC-18
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Documented pathogen associated with this species: Escherichia coli Endemic in Africa
Genetically matched E. coli isolates (sharing MLST ST10 and ST117) recovered from the cecal contents of slaughtered abattoir chickens (79% of abattoir clonal group isolates)
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-407
File: GCA_055689475.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-21149There are more related species. Open the species tree to see them all.
ChEMBL: CHEMBL279273 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Log 1/C 3.59AFDSI-METABOLOMICS-333
ChEMBL: ISOTRETINOIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 900.0 nMAFDSI-METABOLOMICS-334
ChEMBL: CHEMBL333032 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 470.0 nMAFDSI-METABOLOMICS-335
ChEMBL: CHEMBL2111790 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 500000.0 nMAFDSI-METABOLOMICS-336
ChEMBL: TRETINOIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 370.0 nMAFDSI-METABOLOMICS-337
ChEMBL: CHEMBL2111792 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 10.0 %AFDSI-METABOLOMICS-338
ChEMBL: CHEMBL114929 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 40.0 nMAFDSI-METABOLOMICS-339
ChEMBL: CHEMBL53015 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 161.0 nMAFDSI-METABOLOMICS-340
ChEMBL: MELATONIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 0.7 nMAFDSI-METABOLOMICS-341
ChEMBL: CHEMBL113243 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 7.6 nMAFDSI-METABOLOMICS-342
ChEMBL: CHEMBL111866 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 0.45 nMAFDSI-METABOLOMICS-343
ChEMBL: CHEMBL113067 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 4.0 nMAFDSI-METABOLOMICS-344
ChEMBL: CHEMBL419939 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 224.0 nMAFDSI-METABOLOMICS-345
ChEMBL: CHEMBL113859 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 0.53 nMAFDSI-METABOLOMICS-346
ChEMBL: CHEMBL111880 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 29.0 nMAFDSI-METABOLOMICS-347
ChEMBL: CHEMBL113244 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 3.0 nMAFDSI-METABOLOMICS-348
ChEMBL: CHEMBL607777 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 10.3 nMAFDSI-METABOLOMICS-349
ChEMBL: N6-PHENYLADENOSINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4.6 nMAFDSI-METABOLOMICS-350
ChEMBL: CHEMBL1093910 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 6.4 nMAFDSI-METABOLOMICS-351
ChEMBL: CHEMBL610427 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 13.1 nMAFDSI-METABOLOMICS-352
ChEMBL: CHEMBL45891 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2.5 nMAFDSI-METABOLOMICS-353
ChEMBL: CHEMBL609650 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 11.1 nMAFDSI-METABOLOMICS-354
ChEMBL: CHEMBL608217 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 42.1 nMAFDSI-METABOLOMICS-355
ChEMBL: CHEMBL607666 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 25.3 nMAFDSI-METABOLOMICS-356
ChEMBL: CHEMBL609086 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 45.1 nMAFDSI-METABOLOMICS-357
ChEMBL: CHEMBL607951 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 19.0 nMAFDSI-METABOLOMICS-358
ChEMBL: CHEMBL301620 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 5800.0 nMAFDSI-METABOLOMICS-359
ChEMBL: CHEMBL59384 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 82.0 nMAFDSI-METABOLOMICS-360
ChEMBL: CHEMBL299248 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 nMAFDSI-METABOLOMICS-361
ChEMBL: CHEMBL61753 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 10000.0 nMAFDSI-METABOLOMICS-362
ChEMBL: CHEMBL59004 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1100.0 nMAFDSI-METABOLOMICS-363
ChEMBL: CHEMBL59054 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 11000.0 nMAFDSI-METABOLOMICS-364
ChEMBL: CHEMBL294684 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 nMAFDSI-METABOLOMICS-365
ChEMBL: STAUROSPORINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 10.0 nMAFDSI-METABOLOMICS-366
ChEMBL: CHEMBL59009 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1800.0 nMAFDSI-METABOLOMICS-367
ChEMBL: CHEMBL58458 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1600.0 nMAFDSI-METABOLOMICS-368
Evidence: Bergeron CR, Prussing C, Boerlin P, Daignault D, Dutil L, Reid-Smith RJ, Zhanel GG, Manges AR. Chicken as reservoir for extraintestinal pathogenic Escherichia coli in humans, Canada. Emerg Infect Dis (2012). https://doi.org/10.3201/eid1803.111099. PMID: 22377351. AFDSI-ASSOC-8
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.