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Mus musculus

house mouse

taxon 10090

Indigenous / local names

Genome browser

Sequence records

genome (fasta)

mitochondrion genomemirrored

Origin: hub

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First synced: 8/31/2026 · Last updated: 8/31/2026

Source: NCBI NC_005089.1 · View at source ↗

publiccc0AFDSI-SEQ-699

GoaT: Chromosome assembly · 2.73 Gb · scaffold N50 106,145,001 · 21 chromosomes · View at source ↗

Raw reads cross-referenced (SRA):

Publicly accessible — no request needed.

transcriptome (fasta)

mirrored

Origin: hub

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First synced: 9/2/2026 · Last updated: 9/2/2026

Source: NCBI NM_001361996.1 · View at source ↗

Released: 2018-03-31

publiccc0AFDSI-SEQ-987

Publicly accessible — no request needed.

AlphaFold DB proteome: UP000000589

Proteomics (external sources)

PaxDb — real per-protein abundance

Tmsb4x (10090.ENSMUSP00000107795) — abundance 18520AFDSI-PROTEOMICS-601

Hba-a2 (10090.ENSMUSP00000090895) — abundance 15648AFDSI-PROTEOMICS-602

Hba-a1 (10090.ENSMUSP00000090897) — abundance 15648AFDSI-PROTEOMICS-603

Hbb-bs (10090.ENSMUSP00000023934) — abundance 13476AFDSI-PROTEOMICS-604

Hbb-bt (10090.ENSMUSP00000095794) — abundance 13476AFDSI-PROTEOMICS-605

Tubb5 (10090.ENSMUSP00000001566) — abundance 12796AFDSI-PROTEOMICS-606

Ptma (10090.ENSMUSP00000044188) — abundance 8312AFDSI-PROTEOMICS-607

Eef1a1 (10090.ENSMUSP00000042457) — abundance 6102AFDSI-PROTEOMICS-608

Actg1 (10090.ENSMUSP00000071486) — abundance 5512AFDSI-PROTEOMICS-609

Actb (10090.ENSMUSP00000098066) — abundance 5489AFDSI-PROTEOMICS-610

PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)

Motile Vesicles or MoVes are a migration-associated extracellular vesicle population carrying genomic DNA (PXD083320) ↗AFDSI-PROJREF-414

GDF15 Resolves Liver Inflammation in MASH Independently of Reductions in Food Intake or Weight Loss (PXD083028) ↗AFDSI-PROJREF-415

Single-oocyte DIA proteomic profiling during follicular development in mice (PXD082998) ↗AFDSI-PROJREF-416

Activity-based profiling of primary brain cells identifies covalent allosteric modulators of HCN channels (PXD082934) ↗AFDSI-PROJREF-417

Proteomic and phosphoproteomic analysis of mouse nerves and neuromas by TMT and mass spectrometry. (PXD082960) ↗AFDSI-PROJREF-418

A lifespan multi-tissue atlas of non-canonical peptides reveals organ- and life-stage-specific proteomic remodeling in mice (PXD082651) ↗AFDSI-PROJREF-419

Multi-region proteomics of synaptosomes and cytosolic fractions of Chrdl1 KO and WT mouse brains (PXD082639) ↗AFDSI-PROJREF-420

Engineering Palmitoylated G-Quadruplex Aptamers to Target STAT3 and Overcome Therapeutic Resistance in Pancreatic Cancer (PXD082487) ↗AFDSI-PROJREF-421

Nucleosides and Oligonucleotides analysis using LC-MS/MS in mouse liver (PXD082484) ↗AFDSI-PROJREF-422

Mapping of ATR–ATRIP phosphorylation sites before and after autophosphorylation (PXD082486) ↗AFDSI-PROJREF-423

Chemical Profiles (external sources)

ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.

ChEMBL: BOSUTINIB (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 20.0 %AFDSI-METABOLOMICS-754

ChEMBL: CHEMBL4847656 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 3.968AFDSI-METABOLOMICS-755

ChEMBL: SILMITASERTIB (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; FC 2.605AFDSI-METABOLOMICS-756

ChEMBL: CHEMBL6167833 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-757

ChEMBL: CHEMBL55305 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ratio 0.77AFDSI-METABOLOMICS-758

ChEMBL: CHEMBL323757 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ED50 22.4 umol.kg-1AFDSI-METABOLOMICS-759

ChEMBL: CHEMBL446399 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ratio 0.64AFDSI-METABOLOMICS-760

ChEMBL: NALTREXONE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; AD50 0.06 mg kg-1AFDSI-METABOLOMICS-761

ChEMBL: CHEMBL94515 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; AD50 10.0 mg kg-1AFDSI-METABOLOMICS-762

ChEMBL: CHEMBL317766 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; AD50 0.51 mg kg-1AFDSI-METABOLOMICS-763

ChEMBL: CHEMBL95050 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; AD50 0.33 mg kg-1AFDSI-METABOLOMICS-764

ChEMBL: CHEMBL94409 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; AD50 0.84 mg kg-1AFDSI-METABOLOMICS-765

ChEMBL: CHEMBL442195 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; AD50 0.51 mg kg-1AFDSI-METABOLOMICS-766

ChEMBL: CHEMBL98626 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; AD50 1.25 mg kg-1AFDSI-METABOLOMICS-767

ChEMBL: AERUGINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-768

ChEMBL: PULICATINS G (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-769

ChEMBL: PULICATIN A (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-770

ChEMBL: CHEMBL4108986 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 600.0 nMAFDSI-METABOLOMICS-771

ChEMBL: CHEMBL4111349 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 788.0 nMAFDSI-METABOLOMICS-772

ChEMBL: CHEMBL3979116 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 6416.0 nMAFDSI-METABOLOMICS-773

ChEMBL: CHEMBL3946661 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 1445.0 nMAFDSI-METABOLOMICS-774

ChEMBL: CHEMBL4108620 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 8808.0 nMAFDSI-METABOLOMICS-775

ChEMBL: CHEMBL3936595 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 7641.0 nMAFDSI-METABOLOMICS-776

ChEMBL: CHEMBL4112056 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 2358.0 nMAFDSI-METABOLOMICS-777

ChEMBL: SPIPERONE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 63.0 nMAFDSI-METABOLOMICS-778

ChEMBL: CHEMBL522691 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-779

ChEMBL: CHEMBL3897426 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 124.0 %AFDSI-METABOLOMICS-780

ChEMBL: CHEMBL384726 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 26.0 nMAFDSI-METABOLOMICS-781

ChEMBL: GECLOSPORIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 13.0 nMAFDSI-METABOLOMICS-782

ChEMBL: CHEMBL415597 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 70.0 nMAFDSI-METABOLOMICS-783

ChEMBL: CYCLOSPORINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 5.0 nMAFDSI-METABOLOMICS-784

ChEMBL: CHEMBL295601 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ED50 10.0 mg.kg-1AFDSI-METABOLOMICS-785

ChEMBL: CHEMBL43773 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ED50 8.5 mg.kg-1AFDSI-METABOLOMICS-786

ChEMBL: CHEMBL431407 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ED50 10.0 mg.kg-1AFDSI-METABOLOMICS-787

Metabolic Profiles (external sources)

MetaboLights: Atlas of one-carbon metabolism in conventional and germ-free mice reveals folate as a key determinant of biochemical pathways (View at source ↗)AFDSI-METABPROF-132

MetaboLights: ATP-binding Cassette Sub-family C Member 5 (ABCC5) Functions as an Efflux Transporter of Glutamate Conjugates and Analogs (View at source ↗)AFDSI-METABPROF-133

MetaboLights: PTER is an N-acetyltaurine hydrolase that regulates feeding and obesity (View at source ↗)AFDSI-METABPROF-134

MetaboLights: A metabolome atlas of mouse brain on the global metabolic signature dynamics following short-term fasting (View at source ↗)AFDSI-METABPROF-135

MetaboLights: Phospholipid acyl chain diversity controls the tissue-specific assembly of mitochondrial cardiolipins (View at source ↗)AFDSI-METABPROF-136

KEGG: KEGG genome-based metabolic profile (mmu) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-137

Cellular & Molecular Imaging (external sources)

IDR: OCT-MoS, a dataset of mouse skin squamous cell carcinoma stages by full-field optical coherence tomography (View on source archive ↗)AFDSI-CELL-772

IDR: Time-resolved structured illumination microscopy reveals key principles of Xist RNA spreading (View on source archive ↗)AFDSI-CELL-773

IDR: Regulation of single-cell genome organization into TADs and chromatin nanodomains (View on source archive ↗)AFDSI-CELL-774

IDR: Regulation of single-cell genome organization into TADs and chromatin nanodomains (View on source archive ↗)AFDSI-CELL-775

IDR: Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis (View on source archive ↗)AFDSI-CELL-776

IDR: Regulation of single-cell genome organization into TADs and chromatin nanodomains (View on source archive ↗)AFDSI-CELL-777

IDR: Regulation of single-cell genome organization into TADs and chromatin nanodomains (View on source archive ↗)AFDSI-CELL-778

IDR: Chromatin arranges in chains of mesoscale domains with nanoscale functional topography independent of cohesin (View on source archive ↗)AFDSI-CELL-779

IDR: idr0018-neff-histopathology/experimentA (View on source archive ↗)AFDSI-CELL-780

IDR: Predicting cell cycle stage from 3D single-cell nuclear-stained images (View on source archive ↗)AFDSI-CELL-781

Geographic range (Africa)

5,680 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.

This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.