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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 35703Also known as: Citrobacter amalonaticus (Young et al. 1971) Brenner and Farmer 1982, Citrobacter intermedius biogroup a, Levinea amalonatica
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 9 of 182 GBIF records (5%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_024741195.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Mafikeng
Sequencing: Illumina NextSeq · SPAdes v. 3.15.3 · 303x coverage
Released: 2022-08-24 · Submitted by: North-West University
publiccc0AFDSI-SEQ-6145 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
fadB — 729 aa
protein 12141 — 207 aa
protein 12142 — 287 aa
cobA — 457 aa
arnA — 660 aa
thiI — 482 aa
murE — 495 aa
ydiU — 480 aa
recB — 1181 aa
katG — 726 aa
Origin: hub
0 downloads
First synced: 11/8/2026 · Last updated: 11/8/2026
Source: NCBI OX223159.1 · View at source ↗
Released: 2022-07-12
publiccc0AFDSI-SEQ-6520 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
AlphaFold DB proteome: UP000292985 ↗
PaxDb — real per-protein abundance
AMG54810.1 (35703.AL524_17850) — abundance 24926AFDSI-PROTEOMICS-701
AL524_12910 (35703.AL524_12910) — abundance 12808AFDSI-PROTEOMICS-702
hupA (35703.AL524_04790) — abundance 12688AFDSI-PROTEOMICS-703
AMG54546.1 (35703.AL524_16360) — abundance 11191AFDSI-PROTEOMICS-704
AMG55959.1 (35703.AL524_05100) — abundance 10823AFDSI-PROTEOMICS-705
tuf (35703.AL524_00895) — abundance 9722AFDSI-PROTEOMICS-706
tuf-2 (35703.AL524_04675) — abundance 9658AFDSI-PROTEOMICS-707
mdh (35703.AL524_00440) — abundance 8894AFDSI-PROTEOMICS-708
AMG52829.1 (35703.AL524_06880) — abundance 8742AFDSI-PROTEOMICS-709
AMG52984.1 (35703.AL524_07740) — abundance 8521AFDSI-PROTEOMICS-710
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL571783 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 4.0 ug.mL-1AFDSI-METABOLOMICS-1392
ChEMBL: GENTAMICIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 128.0 ug.mL-1AFDSI-METABOLOMICS-1393
ChEMBL: AMIKACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 128.0 ug.mL-1AFDSI-METABOLOMICS-1394
ChEMBL: TOBRAMYCIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 128.0 ug.mL-1AFDSI-METABOLOMICS-1395
ChEMBL: IMIPENEM ANHYDROUS (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 2.0 ug.mL-1AFDSI-METABOLOMICS-1396
ChEMBL: CEFOTAXIME (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 32.0 ug.mL-1AFDSI-METABOLOMICS-1397
ChEMBL: CEFOTAXIME (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 32.0 ug.mL-1AFDSI-METABOLOMICS-1398
MetaboLights: Analysis of 3274 bacterial isolates by rapid evaporative ionisation mass spectrometry (REIMS) (View at source ↗)AFDSI-METABPROF-225
pLDDT confidence: 95.5
Auto-synced from AlphaFold DB AF-A0AAX2BEP7-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15482-V1pLDDT confidence: 95.1
Auto-synced from AlphaFold DB AF-A0AAP5RPS8-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15483-V1pLDDT confidence: 89.9
Auto-synced from AlphaFold DB AF-A0AAP5VL60-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15484-V1pLDDT confidence: 95.2
Auto-synced from AlphaFold DB AF-A0AAP5RU04-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15485-V1pLDDT confidence: 91.7
Auto-synced from AlphaFold DB AF-A0AAP5RS72-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15486-V1BioImage Archive: Detection of TH, DAT, IBA1, GFAP and CD68 expression in brain slices of Citrobacter infected Pink-1 wild-type or knock-out mice (View on source archive ↗)AFDSI-CELL-2893
BioImage Archive: Detection of TH, DAT, IBA1, GFAP and CD68 expression in brain slices of Citrobacter infected Pink-1 wild-type or knock-out mice (View on source archive ↗)AFDSI-CELL-2892
BioImage Archive: GBP1 recruitment to actin-rich pedestals induced by extracellular Gram-negative bacteria promotes pyroptosis (View on source archive ↗)AFDSI-CELL-2894
BioImage Archive: GBP1 recruitment to actin-rich pedestals induced by extracellular Gram-negative bacteria promotes pyroptosis (View on source archive ↗)AFDSI-CELL-2895
9 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6145
File: GCF_024741195.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19417There are more related species. Open the species tree to see them all.