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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 57706Also known as: Citrobacter genomospecies 6
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 11 of 377 GBIF records (3%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
31 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_058687735.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Algeria
Sequencing: Illumina NextSeq · CLC NGS Cell v. 10.1.1 · 50x coverage
Released: 2026-06-30 · Submitted by: Paris Saclay University
publiccc0AFDSI-SEQ-6146 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: DZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
tesB — 286 aa
cobA — 457 aa
tesA — 208 aa
fadB — 729 aa
ftsH — 644 aa
mrcB — 846 aa
nnr — 515 aa
rbsK — 404 aa
garL — 256 aa
katG — 726 aa
Origin: hub
31 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_056521565.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tunisia: Sfax
Sequencing: Oxford Nanopore PromethION · NextDenovo v. 2.5.2 · 152x coverage
Released: 2026-04-02 · Submitted by: Institute of Biotechnology of Sfax
publiccc0AFDSI-SEQ-6147 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TN · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
30 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_052409275.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina · SPAdes v. 3.15.3 · 10x coverage
Released: 2025-09-02 · Submitted by: North-West University
publiccc0AFDSI-SEQ-6148 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 11/8/2026 · Last updated: 11/8/2026
Source: NCBI OX222994.1 · View at source ↗
Released: 2022-07-12
publiccc0AFDSI-SEQ-6521 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
AlphaFold DB proteome: UP000586346 ↗
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CEFEPIME (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 4.0 ug.mL-1AFDSI-METABOLOMICS-1401
ChEMBL: CEFTAZIDIME (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 16.0 ug.mL-1AFDSI-METABOLOMICS-1403
ChEMBL: CEFTRIAXONE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 64.0 ug.mL-1AFDSI-METABOLOMICS-1404
ChEMBL: CIPROFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 2.0 ug.mL-1AFDSI-METABOLOMICS-1407
ChEMBL: LEVOFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 8.0 ug.mL-1AFDSI-METABOLOMICS-1409
ChEMBL: MEROPENEM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 0.12 ug.mL-1AFDSI-METABOLOMICS-1411
ChEMBL: CEFTOBIPROLE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 32.0 ug.mL-1AFDSI-METABOLOMICS-1399
ChEMBL: CEFEPIME (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 4.0 ug.mL-1AFDSI-METABOLOMICS-1400
ChEMBL: CEFTAZIDIME (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 16.0 ug.mL-1
MetaboLights: Analysis of 3274 bacterial isolates by rapid evaporative ionisation mass spectrometry (REIMS) (View at source ↗)AFDSI-METABPROF-226
KEGG: KEGG genome-based metabolic profile (cbra) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-348
pLDDT confidence: 95.1
Auto-synced from AlphaFold DB AF-A0A1R0G0I4-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15513-V1pLDDT confidence: 89.9
Auto-synced from AlphaFold DB AF-A0A1V8NZK3-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15514-V1pLDDT confidence: 90.6
Auto-synced from AlphaFold DB AF-A0A4R0M2X7-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15515-V1pLDDT confidence: 95.5
Auto-synced from AlphaFold DB AF-A0A7X1EEW6-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15516-V1pLDDT confidence: 81.0
Auto-synced from AlphaFold DB AF-A0A1R0FSA7-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15517-V1BioImage Archive: Detection of TH, DAT, IBA1, GFAP and CD68 expression in brain slices of Citrobacter infected Pink-1 wild-type or knock-out mice (View on source archive ↗)AFDSI-CELL-2897
BioImage Archive: GBP1 recruitment to actin-rich pedestals induced by extracellular Gram-negative bacteria promotes pyroptosis (View on source archive ↗)AFDSI-CELL-2899
BioImage Archive: Detection of TH, DAT, IBA1, GFAP and CD68 expression in brain slices of Citrobacter infected Pink-1 wild-type or knock-out mice (View on source archive ↗)AFDSI-CELL-2896
BioImage Archive: GBP1 recruitment to actin-rich pedestals induced by extracellular Gram-negative bacteria promotes pyroptosis (View on source archive ↗)AFDSI-CELL-2898
17 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6146
File: GCF_058687735.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20619MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6147
File: GCF_056521565.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20568There are more related species. Open the species tree to see them all.
ChEMBL: CEFTRIAXONE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 64.0 ug.mL-1AFDSI-METABOLOMICS-1405
ChEMBL: CIPROFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 2.0 ug.mL-1AFDSI-METABOLOMICS-1406
ChEMBL: LEVOFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 8.0 ug.mL-1AFDSI-METABOLOMICS-1408
ChEMBL: MEROPENEM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 0.12 ug.mL-1AFDSI-METABOLOMICS-1410
ChEMBL: AMIKACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC90 8.0 ug.mL-1AFDSI-METABOLOMICS-1412
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6148
File: GCF_052409275.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20454