Loading…
Loading…
Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 67827Also known as: Citrobacter genomospecies 7
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded in Africa and elsewhere. 62 of 176 GBIF records (35%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
30 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_013618825.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: Illumina · SOAPdenovo v. 2.04 · 1000x coverage
Released: 2020-07-24 · Submitted by: Auburn University
publiccc0AFDSI-SEQ-6159 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
fadB — 729 aa
cysG_1 — 457 aa
tesA — 166 aa
tesB — 286 aa
glmU — 456 aa
garL — 256 aa
arnA — 660 aa
metL — 810 aa
carB — 1074 aa
ppnP — 94 aa
AlphaFold DB proteome: UP000837205 ↗
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: PABETAN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 256.0 ug.mL-1AFDSI-METABOLOMICS-1480
ChEMBL: NALIDIXIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-1481
ChEMBL: CIPROFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.5 ug.mL-1AFDSI-METABOLOMICS-1482
KEGG: KEGG genome-based metabolic profile (cwe) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-351
pLDDT confidence: 95.3
Auto-synced from AlphaFold DB AF-A0A9N8GTR9-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15663-V1pLDDT confidence: 89.8
Auto-synced from AlphaFold DB AF-A0A5P2MJ39-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15664-V1pLDDT confidence: 94.8
Auto-synced from AlphaFold DB AF-A0A9N8CJW3-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15665-V1pLDDT confidence: 95.0
Auto-synced from AlphaFold DB AF-A0A5P2M6Y6-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15666-V1pLDDT confidence: 96.9
Auto-synced from AlphaFold DB AF-A0A5P2M6T4-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-15667-V1BioImage Archive: Detection of TH, DAT, IBA1, GFAP and CD68 expression in brain slices of Citrobacter infected Pink-1 wild-type or knock-out mice (View on source archive ↗)AFDSI-CELL-3023
BioImage Archive: Detection of TH, DAT, IBA1, GFAP and CD68 expression in brain slices of Citrobacter infected Pink-1 wild-type or knock-out mice (View on source archive ↗)AFDSI-CELL-3024
BioImage Archive: GBP1 recruitment to actin-rich pedestals induced by extracellular Gram-negative bacteria promotes pyroptosis (View on source archive ↗)AFDSI-CELL-3026
BioImage Archive: GBP1 recruitment to actin-rich pedestals induced by extracellular Gram-negative bacteria promotes pyroptosis (View on source archive ↗)AFDSI-CELL-3025
62 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6159
File: GCF_013618825.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-18950There are more related species. Open the species tree to see them all.