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Sus scrofa

pig

taxon 9823

Indigenous / local names

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The assembly file for Sus scrofa hasn't finished reaching the Hub yet — check back shortly.

Sequence records

genome (fasta)

mirrored

Origin: hub

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First synced: 8/26/2026 · Last updated: 8/26/2026

Source: NCBI GCA_055447695.1 · View at source ↗

publiccc0AFDSI-SEQ-401

GoaT: Chromosome assembly · 2.66 Gb · scaffold N50 145,095,113 · 20 chromosomes · View at source ↗

Publicly accessible — no request needed.

transcriptome (fasta)

mirrored

Origin: hub

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First synced: 8/26/2026 · Last updated: 8/26/2026

Source: NCBI NM_001044602.1 · View at source ↗

publiccc0AFDSI-SEQ-677

Publicly accessible — no request needed.

No AlphaFold DB proteome found for this species.

Proteomics (external sources)

PaxDb — real per-protein abundance

LOC100302368 (9823.ENSSSCP00000045861) — abundance 14250AFDSI-PROTEOMICS-451

VIM (9823.ENSSSCP00000031624) — abundance 13773AFDSI-PROTEOMICS-452

LOC110257905 (9823.ENSSSCP00000035484) — abundance 12658AFDSI-PROTEOMICS-453

TMSB4X (9823.ENSSSCP00000028545) — abundance 12658AFDSI-PROTEOMICS-454

RPLP1 (9823.ENSSSCP00000005345) — abundance 8828AFDSI-PROTEOMICS-455

S100A6 (9823.ENSSSCP00000020154) — abundance 8199AFDSI-PROTEOMICS-456

RPLP2 (9823.ENSSSCP00000052173) — abundance 7693AFDSI-PROTEOMICS-457

ACTB (9823.ENSSSCP00000035521) — abundance 7370AFDSI-PROTEOMICS-458

ANXA2 (9823.ENSSSCP00000031749) — abundance 7231AFDSI-PROTEOMICS-459

ACTG1 (9823.ENSSSCP00000040911) — abundance 6398AFDSI-PROTEOMICS-460

PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)

4D Smart DIA Quantitative Proteomic Analysis of Lysosomal Fractions Isolated from ASFV-Infected PAMs Following Bacterial Challenge (PXD082798) ↗AFDSI-PROJREF-463

Proteomic Analysis of Porcine Small Intestinal Submucosa Before and After Decellularization (PXD079406) ↗AFDSI-PROJREF-318

Proteomics of boar seminal plasma extracellular vesicles (PXD079300) ↗AFDSI-PROJREF-319

LC-MS on porcine pancreatic remodeling (PXD077246) ↗AFDSI-PROJREF-320

An Integrated Multi-omics Analysis Reveals PDCoV Hijacks the PPAR Signaling Network to Orchestrate Metabolic-Immune Dysregulation and Intestinal Injury in Piglets (PXD076809) ↗AFDSI-PROJREF-321

Comparison of the reactivity of hypochlorous acid (HOCl) and hyposelenocyanous acid (HOSeCN) with elastase: role of amino acid modification and structural changes in loss of activity. (PXD075502) ↗AFDSI-PROJREF-322

Pull-down experiment of Cdkn1a mRNA and its protein binding partners in wounds and homeostatic skin of porcine skin (PXD075222) ↗AFDSI-PROJREF-323

Bulk proteomics of porcine skin excision injury at 15 minutes and 4 hours post wounding. (PXD075230) ↗AFDSI-PROJREF-324

Molecular profiling of extracellular vesicles isolated from boar reproductive fluids (PXD074929) ↗AFDSI-PROJREF-325

A porcine spectral assay library to quantify brain proteome by DIA-MS (PXD074603) ↗AFDSI-PROJREF-326

Chemical Profiles (external sources)

ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.

ChEMBL: CHEMBL101972 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 30.0 nMAFDSI-METABOLOMICS-535

ChEMBL: CHEMBL4524110 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 nMAFDSI-METABOLOMICS-536

ChEMBL: CHEMBL99161 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 8000.0 nMAFDSI-METABOLOMICS-537

ChEMBL: CHEMBL99160 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1000000.0 nMAFDSI-METABOLOMICS-538

ChEMBL: CHEMBL101890 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4000.0 nMAFDSI-METABOLOMICS-539

ChEMBL: CHEMBL50396 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 251188.64 nMAFDSI-METABOLOMICS-540

ChEMBL: CHEMBL51918 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 3890451.45 nMAFDSI-METABOLOMICS-541

ChEMBL: CHEMBL54524 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 69183.1 nMAFDSI-METABOLOMICS-542

ChEMBL: CHEMBL56016 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 1071519.31 nMAFDSI-METABOLOMICS-543

ChEMBL: CHEMBL54204 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 21877616.24 nMAFDSI-METABOLOMICS-544

ChEMBL: CHEMBL52697 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 3235936.57 nMAFDSI-METABOLOMICS-545

ChEMBL: CHEMBL298353 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 2137962.09 nMAFDSI-METABOLOMICS-546

ChEMBL: CHEMBL416495 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; -Log KiAFDSI-METABOLOMICS-547

ChEMBL: CHEMBL300602 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 562341.33 nMAFDSI-METABOLOMICS-548

ChEMBL: CHEMBL54748 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Ki 21379.62 nMAFDSI-METABOLOMICS-549

ChEMBL: CHEMBL323853 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; pEC0.5,diss 6.87AFDSI-METABOLOMICS-550

ChEMBL: CHEMBL330891 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; pEC0.5 7.36AFDSI-METABOLOMICS-551

ChEMBL: CHEMBL113188 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; pEC0.5,diss 4.65AFDSI-METABOLOMICS-552

ChEMBL: CHEMBL1206880 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis 8.5AFDSI-METABOLOMICS-740

ChEMBL: CHEMBL2368987 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis 1.0AFDSI-METABOLOMICS-741

ChEMBL: CHEMBL2368991 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis 1.0AFDSI-METABOLOMICS-742

ChEMBL: CHEMBL50631 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysisAFDSI-METABOLOMICS-743

ChEMBL: CHEMBL422765 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysisAFDSI-METABOLOMICS-744

ChEMBL: IMIPENEM ANHYDROUS (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis 100.0AFDSI-METABOLOMICS-745

ChEMBL: CHEMBL2368993 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis 1.0AFDSI-METABOLOMICS-746

ChEMBL: CHEMBL2368992 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysisAFDSI-METABOLOMICS-747

ChEMBL: CHEMBL102131 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis 10.0AFDSI-METABOLOMICS-748

ChEMBL: CHEMBL101476 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis 12.0AFDSI-METABOLOMICS-749

ChEMBL: CHEMBL1159841 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; PT 30.0 sAFDSI-METABOLOMICS-750

ChEMBL: CHEMBL1159854 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; PT 28.5 sAFDSI-METABOLOMICS-751

ChEMBL: CHEMBL1159843 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; PT 26.2 sAFDSI-METABOLOMICS-752

ChEMBL: CHEMBL1159853 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; PT 31.1 sAFDSI-METABOLOMICS-753

Metabolic Profiles (external sources)

MetaboLights: Effects of synbiotic formulations on the pig gut microbiome (View at source ↗)AFDSI-METABPROF-77

MetaboLights: Metabolome of pig endometrium and placenta. (View at source ↗)AFDSI-METABPROF-78

MetaboLights: Metagenomic and Metabolomic Analysis of Gut Microbiota's Impact on Sperm Motility in Rongchang Boars (View at source ↗)AFDSI-METABPROF-79

MetaboLights: Integrated microbiome-metabolome-genome axis data of Laiwu and Lulai pigs (View at source ↗)AFDSI-METABPROF-80

MetaboLights: The maturity in fetal pigs using a multi-fluid metabolomic approach (View at source ↗)AFDSI-METABPROF-81

KEGG: KEGG genome-based metabolic profile (ssc) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-130

MetaboLights: Lipidomics study of different fat deposition sites in wuzhishan pigs with double knockout of APOE/LDLR (View at source ↗)AFDSI-METABPROF-188

Cellular & Molecular Imaging (external sources)

BioImage Archive: Original images for morphological analysis to assess the deformability of red blood cells (View on source archive ↗)AFDSI-CELL-692

BioImage Archive: Hematoxylin and eosin staining and whole slide scanning of histological sections of a porcine lung model of acute respiratory distress syndrome induced via lipopolysaccharide administration (View on source archive ↗)AFDSI-CELL-693

BioImage Archive: Darwin Tree of Life - NHM samples image catalogue (View on source archive ↗)AFDSI-CELL-694

BioImage Archive: Benchmarking porcine pancreatic ductal organoids for drug screening applications (View on source archive ↗)AFDSI-CELL-691

Geographic range (Africa)

544 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.

This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.