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Phytophthora cinnamomi

Indigenous / local names

Phytophthora-wortelvrot (afr) GBIF ↗

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Sequence records

genome (fasta)

mirrored

Origin: hub

79 downloads

First synced: 8/26/2026 · Last updated: 8/26/2026

Source: NCBI GCA_018691715.1 · View at source ↗

Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)

publiccc0AFDSI-SEQ-90

GoaT: Scaffold assembly · 0.05 Gb · scaffold N50 24,869 · BUSCO 92.4% complete · View at source ↗

Publicly accessible — no request needed.

transcriptome (fasta)

mirrored

Origin: hub

0 downloads

First synced: 8/26/2026 · Last updated: 8/26/2026

Source: NCBI XM_067944018.1 · View at source ↗

publiccc0AFDSI-SEQ-649

Publicly accessible — no request needed.

genome (fasta)

mirrored

Origin: hub

20 downloads

First synced: 9/1/2026 · Last updated: 9/1/2026

Source: NCBI GCF_018691715.1 · View at source ↗

Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)

Sequencing: Oxford Nanopore MinION; Illumina HiSeq · SmartDenovo v. Dec 2018 · 100x coverage

publiccc0AFDSI-SEQ-940

GoaT: Scaffold assembly · 0.11 Gb · scaffold N50 1,187,988 · View at source ↗

Publicly accessible — no request needed.

No AlphaFold DB proteome found for this species.

Proteomics (external sources)

PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)

Phosphite Inhibits Phytophthora cinnamomi by Downregulating Oxidoreductases and Disrupting Energy Metabolism (PXD063718) ↗AFDSI-PROJREF-252

Proteomic and Metabolomic study of the Quercus ilex response to Phytophthora cinnamomi, the main causal agent of the decline syndrome, and the identification of putative markers of resistance (PXD046909) ↗AFDSI-PROJREF-253

Targeted delivery of tumor necrosis factor in combination with lomustine induces a T-cell dependent regression of glioblastoma (PXD041234) ↗AFDSI-PROJREF-254

Differences in the proteomic and metabolomic response during the early stages of Phytophthora cinnamomi infection of two Quercus species with contrasting degrees of susceptibility. (PXD033162) ↗AFDSI-PROJREF-255

Proteomic response to drought and Phytophthora cinnamomi in Quercus ilex. (PXD025704) ↗AFDSI-PROJREF-256

Integrated proteomic and metabolomic profiling of Phytophthora cinnamomi attack on sweet chestnut (Castanea sativa) reveals distinct molecular reprogramming proximal to the infection site and away from it (PXD022381) ↗AFDSI-PROJREF-257

Disclosing proteins in cork oak plants associated with the immune response to P. cinnamomi inoculation in a long-term assay (PXD021455) ↗AFDSI-PROJREF-258

Chemical Profiles (external sources)

ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.

ChEMBL: SPHINXOLIDE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC90 2.0 ppmAFDSI-METABOLOMICS-668

ChEMBL: SPHINXOLIDE B (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC90 2.0 ppmAFDSI-METABOLOMICS-669

ChEMBL: SPHINXOLIDE C (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC90 2.0 ppmAFDSI-METABOLOMICS-670

ChEMBL: NEOSIPHONIAMOLIDE A (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC90 5.0 ppmAFDSI-METABOLOMICS-671

ChEMBL: CHEMBL464544 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-672

ChEMBL: TERRECYCLIC ACID A (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-673

ChEMBL: CHEMBL467402 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 37.0 mm2AFDSI-METABOLOMICS-674

ChEMBL: HARZIANOLIDE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; GI 25.0 %AFDSI-METABOLOMICS-675

Cellular & Molecular Imaging (external sources)

BioImage Archive: Microtubules in the coenocyte Phytophthora function in nuclear positioning and sustaining tip growth (View on source archive ↗)AFDSI-CELL-590

Geographic range (Africa)

41 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.

This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.