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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
A strain of Salmonella enterica. Facts recorded for the species, such as pathogen–reservoir associations, are shown here too.
taxon 108619Also known as: Salmonella enterica serovar Newport, Salmonella newport, Salmonella serotype Newport
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 5,480 of 224,002 GBIF records (2%) are from Africa (checked 10/11/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
35 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_002064305.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Mauritius
Sequencing: Illumina HiSeq · SPAdes v. 3.9.0 · 178x coverage
Released: 2017-03-22 · Submitted by: University of California at Davis
publiccc0AFDSI-SEQ-1919 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: MU · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_019360915.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Moshi
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 61x coverage
Released: 2021-07-27 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2114 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
35 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_019360975.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Moshi
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 69x coverage
Released: 2021-07-27 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2117 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515085.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 89x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2132 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515105.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 86x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2134 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515165.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 82x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2135 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515185.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 63x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2136 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515145.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 85x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2137 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515515.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 86x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2149 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515545.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 89x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2150 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515585.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 90x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2151 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515565.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 97x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2152 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
47 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_007757115.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 173x coverage
Released: 2019-07-31 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3704 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
48 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008662435.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 74x coverage
Released: 2019-09-23 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3707 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
48 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008662835.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 73x coverage
Released: 2019-09-23 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3709 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
46 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008845805.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 73x coverage
Released: 2019-10-07 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3711 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
46 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008845925.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 106x coverage
Released: 2019-10-07 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3712 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
46 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008847465.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 67x coverage
Released: 2019-10-07 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3716 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
48 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008662535.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 86x coverage
Released: 2019-09-23 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3708 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Optimization of a Top-Down Proteomics Platform for Closely-Related Pathogenic Bacteria Discrimination (PXD019247) ↗AFDSI-PROJREF-887
BioImage Archive: (View on source archive ↗)AFDSI-CELL-6743
BioImage Archive: Programmed Cell Death Pathways Coordinate Neutrophil and Macrophage Clearance in Zebrafish and Are Differentially Exploited by Salmonella Typhimurium (View on source archive ↗)AFDSI-CELL-6744
BioImage Archive: Reference raw BioImaging dataset to assess the phenotypic trait diversity of bryophytes within the family Scapaniaceae (View on source archive ↗)AFDSI-CELL-6745
BioImage Archive: Spatial-Spectral Single-Molecule Microscopy Dataset (View on source archive ↗)AFDSI-CELL-6746
BioImage Archive: Serial-two photon tomography of Salmonella-infected mouse spleen (View on source archive ↗)AFDSI-CELL-6747
BioImage Archive: In support of: Immunocompetent Cell Targeting by Food-Additive Titanium Dioxide (View on source archive ↗)AFDSI-CELL-6748
BioImage Archive: Estimating phenotypic traits with morphometry from 16 specimens of thallose liverworts of biological soil crusts collected in Southern Sweden and Germany (View on source archive ↗)AFDSI-CELL-6749
BioImage Archive: An Rhs effector uses distinct target cell functions to intoxicate bacterial and fungal competitors (View on source archive ↗)AFDSI-CELL-6750
BioImage Archive: Darwin Tree of Life - NHM samples image catalogue (View on source archive ↗)AFDSI-CELL-6751
BioImage Archive: A bench-top Dark-Root device built with LEGO® bricks enables a non-invasive plant root development analysis in soil conditions mirroring nature (View on source archive ↗)AFDSI-CELL-6752
2,196 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A real, citation-backed link between this species and a documented pathogen or wildlife reservoir host — see the Pathogen-Reservoir page (under One Health) for the full pilot list.
Known reservoir host: Agama agama Endemic to Africa
Recorded for the species Salmonella enterica.
Landmark study establishing Agama agama as a natural intestinal host reservoir for Salmonella enterica
Evidence: COLLARD P, MONTEFIORE D. The agama lizard as reservoir of Salmonellae in Nigeria. Nature (1957). https://doi.org/10.1038/179164b0. PMID: 13400133. AFDSI-ASSOC-13
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Sus scrofa Native to Africa
Recorded for the species Salmonella enterica.
Recovered Salmonella enterica from ileocecal lymph nodes (26.0%), carcass surface swabs (16.0%), and pork meat (14.0%) of 100 slaughtered pigs
Evidence: Gomes-Neves E, Antunes P, Tavares A, Themudo P, Cardoso MF, Gärtner F, Costa JM, Peixe L. Salmonella cross-contamination in swine abattoirs in Portugal: Carcasses, meat and meat handlers. Int J Food Microbiol (2012). https://doi.org/10.1016/j.ijfoodmicro.2012.04.015. PMID: 22607810. AFDSI-ASSOC-12
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2150
File: GCA_019515545.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20829MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2132
File: GCA_019515085.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20826There are more related species. Open the species tree to see them all.
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Gallus gallus domesticus Linnaeus Introduced
Recorded for the species Salmonella enterica.
Isolated 34 Salmonella enterica strains across 8 serotypes from cloacal swabs and farm environments of free-range village chickens (Gallus gallus)
Evidence: Mohammed Jajere S, Hassan L, Zakaria Z, Abu J, Abdul Aziz S. Antibiogram Profiles and Risk Factors for Multidrug Resistance of Salmonella enterica Recovered from Village Chickens (Gallus gallus domesticus Linnaeus) and Other Environmental Sources in the Central and Southern Peninsular Malaysia. Antibiotics (Basel) (2020). https://doi.org/10.3390/antibiotics9100701. PMID: 33076451. AFDSI-ASSOC-11
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Bos taurus Introduced
Recorded for the species Salmonella enterica.
The three most common serotypes were Salmonella enterica subspecies enterica serotype Heidelberg (n = 200), Salmonella enterica subspecies enterica serotype Enteritidis (n = 170) and Salmonella enterica subspecies enterica serotype Typhimurium (n = 146).
Evidence: Gelaw AK, Nthaba P, Matle I. Detection of Salmonella from animal sources in South Africa between 2007 and 2014. J S Afr Vet Assoc (2018). https://doi.org/10.4102/jsava.v89i0.1643. PMID: 30456978. AFDSI-ASSOC-5
Curated by Dr. Ichrak Hayah (Mohammed V University in Rabat, Morocco) · ORCID 0000-0002-0783-9672. Reviewed by the African DSI DataBank.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2117
File: GCF_019360975.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19167MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2114
File: GCF_019360915.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19164MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-1919
File: GCF_002064305.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-18496