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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
A strain of Salmonella enterica. Facts recorded for the species, such as pathogen–reservoir associations, are shown here too.
taxon 90371Also known as: Bacillus typhimurium, Salmonella choleraesuis serotype typhimurium, Salmonella enterica 1,4,[5],12,:i:1,2, Salmonella enterica ser. typhimurium, Salmonella enterica serotype Typhimurium, Salmonella enterica serovar Typhimurium, Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:1,2, Salmonella typhi-murium, Salmonella typhimurium
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 5,480 of 224,002 GBIF records (2%) are from Africa (checked 10/11/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
38 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_006075655.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 105x coverage
Released: 2019-06-06 · Submitted by: Center for Food Safety and Applied Nutrition
publiccc0AFDSI-SEQ-1938 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008662635.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 98x coverage
Released: 2019-09-23 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-1946 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008988145.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 71x coverage
Released: 2019-10-11 · Submitted by: FDA
publiccc0AFDSI-SEQ-1948 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008988185.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 127x coverage
Released: 2019-10-11 · Submitted by: FDA
publiccc0AFDSI-SEQ-1949 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
35 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_009592365.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 157x coverage
Released: 2019-11-05 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-1950 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_009592885.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 54x coverage
Released: 2019-11-05 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-1951 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_009592985.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 111x coverage
Released: 2019-11-05 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-1953 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_019360035.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Moshi
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 94x coverage
Released: 2021-07-27 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2091 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
37 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_019360705.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Moshi
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 113x coverage
Released: 2021-07-27 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2106 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
35 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_019360735.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Moshi
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 81x coverage
Released: 2021-07-27 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2107 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
35 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_019360835.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Moshi
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 78x coverage
Released: 2021-07-27 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2111 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
39 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055679495.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2399 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
41 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008865065.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 82x coverage
Released: 2019-10-07 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3163 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
41 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_054219035.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina NextSeq · Jekesa v. 1.0 · 80x coverage
Released: 2025-12-29 · Submitted by: University of Pretoria
publiccc0AFDSI-SEQ-3206 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
43 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_054219075.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina NextSeq · Jekesa v. 1.0 · 80x coverage
Released: 2025-12-29 · Submitted by: University of Pretoria
publiccc0AFDSI-SEQ-3208 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
44 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_054219105.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina NextSeq · Jekesa v. 1.0 · 80x coverage
Released: 2025-12-29 · Submitted by: University of Pretoria
publiccc0AFDSI-SEQ-3210 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
52 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019645055.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 79x coverage
Released: 2021-08-17 · Submitted by: FDA
publiccc0AFDSI-SEQ-3334 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
54 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019645095.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 82x coverage
Released: 2021-08-17 · Submitted by: FDA
publiccc0AFDSI-SEQ-3336 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
54 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_003873335.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 170x coverage
Released: 2018-12-06 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3619 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
47 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_005999445.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 84x coverage
Released: 2019-06-04 · Submitted by: Center for Food Safety and Applied Nutrition
publiccc0AFDSI-SEQ-3684 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
48 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_007756815.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 100x coverage
Released: 2019-07-31 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3703 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
48 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008865015.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 100x coverage
Released: 2019-10-07 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3717 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
47 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008988065.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 50x coverage
Released: 2019-10-11 · Submitted by: FDA
publiccc0AFDSI-SEQ-3721 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
47 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_009592945.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 199x coverage
Released: 2019-11-05 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3725 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
49 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_009593085.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 150x coverage
Released: 2019-11-05 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3726 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
58 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_008845825.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 72x coverage
Released: 2019-10-07 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-4926 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
58 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_008845905.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 53x coverage
Released: 2019-10-07 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-4927 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
60 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_006079975.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 101x coverage
Released: 2019-06-06 · Submitted by: Center for Food Safety and Applied Nutrition
publiccc0AFDSI-SEQ-5003 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
61 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_006081075.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 91x coverage
Released: 2019-06-06 · Submitted by: Center for Food Safety and Applied Nutrition
publiccc0AFDSI-SEQ-5006 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
59 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_006080915.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 140x coverage
Released: 2019-06-06 · Submitted by: Center for Food Safety and Applied Nutrition
publiccc0AFDSI-SEQ-5007 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
64 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_007756915.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 81x coverage
Released: 2019-07-31 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-5557 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
62 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_008662545.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 44x coverage
Released: 2019-09-23 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-5558 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
64 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_007759975.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 42x coverage
Released: 2019-07-31 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-5559 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
64 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_008663115.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 73x coverage
Released: 2019-09-23 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-5560 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
66 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_003994655.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Rwanda:Rulindo
Sequencing: Illumina MiniSeq & Oxford Nanopore MiniION · Unicycler v. 0.4.7 · 348x coverage
Released: 2019-01-06 · Submitted by: Pennsylvania State University
publiccc0AFDSI-SEQ-6074 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: RW · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
56 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_008865955.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 27x coverage
Released: 2019-10-07 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-6433 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_019360895.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Moshi
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 61x coverage
Released: 2021-07-27 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2113 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_040281405.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria: Share market, Kwara State
Sequencing: Illumina · SPAdes v. 1 · 100x coverage
Released: 2024-06-24 · Submitted by: NATIONAL VETERINARY RESEARCH INSTITUTE
publiccc0AFDSI-SEQ-2266 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
41 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_009592745.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 69x coverage
Released: 2019-11-05 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3168 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
47 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_006003005.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 129x coverage
Released: 2019-06-04 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3685 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
46 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008988295.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 53x coverage
Released: 2019-10-11 · Submitted by: FDA
publiccc0AFDSI-SEQ-3723 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
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First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_006147495.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 94x coverage
Released: 2019-06-07 · Submitted by: Center for Food Safety and Applied Nutrition
publiccc0AFDSI-SEQ-5009 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 11/8/2026 · Last updated: 11/8/2026
Source: NCBI U04161.1 · View at source ↗
Released: 1994-02-02
publiccc0AFDSI-SEQ-6560 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 11/8/2026 · Last updated: 11/8/2026
Source: NCBI M25605.1 · View at source ↗
Released: 1989-09-15
publiccc0AFDSI-SEQ-6575 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Bacterial outer membrane protein prevents enteric Salmonella infection (PXD068469) ↗AFDSI-PROJREF-893
Salmonella SopB suppresses post-transcriptionally regulated cytokine release to reduce early tissue inflammation and delay disease progression (PXD079152) ↗AFDSI-PROJREF-890
Flow cytometry-based isolation and ultra-sensitive proteomics of Salmonella-containing phagosomes provides novel insights into pathogen interactions with host cells (PXD076727) ↗AFDSI-PROJREF-891
A synthetic rationally designed antimicrobial peptide attenuates Salmonella invasion by suppressing SPI-1 and motility (PXD075029) ↗AFDSI-PROJREF-892
Proteomic Changes in Cancer Cell Lines as a Result of Bacterial Infection (PXD062673) ↗AFDSI-PROJREF-894
Flow cytometry-based isolation and ultra-sensitive proteomics of Salmonella-containing phagosomes provides novel insights into pathogen interactions with host cells (PXD062621) ↗AFDSI-PROJREF-895
Salmonella effector kinase SteC is activated by host-mediated phosphorylation (PXD061217) ↗AFDSI-PROJREF-896
Proteomic analysis of wild Salmonella strains and ychJ knockout strains under oxygen stress (PXD059262) ↗AFDSI-PROJREF-897
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL433772 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1250.0 ug.mL-1AFDSI-METABOLOMICS-2556
ChEMBL: CIPROFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.0095 ug.mL-1AFDSI-METABOLOMICS-2557
ChEMBL: CHEMBL174915 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1250.0 ug.mL-1AFDSI-METABOLOMICS-2558
ChEMBL: CHEMBL174488 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 9.76 ug.mL-1AFDSI-METABOLOMICS-2559
ChEMBL: NORFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.0763 ug.mL-1AFDSI-METABOLOMICS-2561
ChEMBL: CHEMBL175147 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.3 ug.mL-1AFDSI-METABOLOMICS-2563
ChEMBL: CHEMBL94037 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.049 ug.mL-1AFDSI-METABOLOMICS-2565
ChEMBL: CHEMBL433772 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1250.0 ug.mL-1AFDSI-METABOLOMICS-2560
ChEMBL: NORFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.0763 ug.mL-1
MetaboLights: L-leucine increases the sensitivity of drug-resistant Salmonella to sarafloxacin by stimulating central carbon metabolism and increasing intracellular reactive oxygen species level (LC-MS positive mode) (View at source ↗)AFDSI-METABPROF-308
MetaboLights: L-leucine increases the sensitivity of drug-resistant Salmonella to sarafloxacin by stimulating central carbon metabolism and increasing intracellular reactive oxygen species level (LC-MS negative mode) (View at source ↗)AFDSI-METABPROF-309
MetaboLights: A pathogen-specific isotope tracing approach reveals metabolic activities and fluxes of intracellular Salmonella (View at source ↗)AFDSI-METABPROF-310
BioImage Archive: (View on source archive ↗)AFDSI-CELL-7754
BioImage Archive: Programmed Cell Death Pathways Coordinate Neutrophil and Macrophage Clearance in Zebrafish and Are Differentially Exploited by Salmonella Typhimurium (View on source archive ↗)AFDSI-CELL-7755
BioImage Archive: Reference raw BioImaging dataset to assess the phenotypic trait diversity of bryophytes within the family Scapaniaceae (View on source archive ↗)AFDSI-CELL-7756
BioImage Archive: The Legionella phosphocholinase AnkX modulates IMPDH2 regulation and cytoophidia dynamics (View on source archive ↗)AFDSI-CELL-7757
BioImage Archive: Serial-two photon tomography of Salmonella-infected mouse spleen (View on source archive ↗)AFDSI-CELL-7758
BioImage Archive: Estimating phenotypic traits with morphometry from 16 specimens of thallose liverworts of biological soil crusts collected in Southern Sweden and Germany (View on source archive ↗)AFDSI-CELL-7759
BioImage Archive: An Rhs effector uses distinct target cell functions to intoxicate bacterial and fungal competitors (View on source archive ↗)AFDSI-CELL-7760
BioImage Archive: A bench-top Dark-Root device built with LEGO® bricks enables a non-invasive plant root development analysis in soil conditions mirroring nature (View on source archive ↗)AFDSI-CELL-7761
BioImage Archive: In support of: Immunocompetent Cell Targeting by Food-Additive Titanium Dioxide (View on source archive ↗)AFDSI-CELL-7868
BioImage Archive: The European Reference Genome Atlas - COPO submission (View on source archive ↗)AFDSI-CELL-7869
2,196 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A real, citation-backed link between this species and a documented pathogen or wildlife reservoir host — see the Pathogen-Reservoir page (under One Health) for the full pilot list.
Known reservoir host: Agama agama Endemic to Africa
Recorded for the species Salmonella enterica.
Landmark study establishing Agama agama as a natural intestinal host reservoir for Salmonella enterica
Evidence: COLLARD P, MONTEFIORE D. The agama lizard as reservoir of Salmonellae in Nigeria. Nature (1957). https://doi.org/10.1038/179164b0. PMID: 13400133. AFDSI-ASSOC-13
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Sus scrofa Native to Africa
Recorded for the species Salmonella enterica.
Recovered Salmonella enterica from ileocecal lymph nodes (26.0%), carcass surface swabs (16.0%), and pork meat (14.0%) of 100 slaughtered pigs
Evidence: Gomes-Neves E, Antunes P, Tavares A, Themudo P, Cardoso MF, Gärtner F, Costa JM, Peixe L. Salmonella cross-contamination in swine abattoirs in Portugal: Carcasses, meat and meat handlers. Int J Food Microbiol (2012). https://doi.org/10.1016/j.ijfoodmicro.2012.04.015. PMID: 22607810. AFDSI-ASSOC-12
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-3210
File: GCF_054219105.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20514MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-3208
File: GCF_054219075.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20512There are more related species. Open the species tree to see them all.
ChEMBL: CHEMBL175147 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.3 ug.mL-1AFDSI-METABOLOMICS-2564
ChEMBL: CHEMBL94037 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.049 ug.mL-1AFDSI-METABOLOMICS-2566
ChEMBL: IMIPENEM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.781 ug.mL-1AFDSI-METABOLOMICS-2568
ChEMBL: IMIPENEM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.781 ug.mL-1AFDSI-METABOLOMICS-2567
ChEMBL: MEROPENEM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.049 ug.mL-1AFDSI-METABOLOMICS-2569
ChEMBL: CHEMBL142875 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.049 ug.mL-1AFDSI-METABOLOMICS-2571
ChEMBL: MEROPENEM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.049 ug.mL-1AFDSI-METABOLOMICS-2570
ChEMBL: CHEMBL142875 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.049 ug.mL-1AFDSI-METABOLOMICS-2572
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Gallus gallus domesticus Linnaeus Introduced
Recorded for the species Salmonella enterica.
Isolated 34 Salmonella enterica strains across 8 serotypes from cloacal swabs and farm environments of free-range village chickens (Gallus gallus)
Evidence: Mohammed Jajere S, Hassan L, Zakaria Z, Abu J, Abdul Aziz S. Antibiogram Profiles and Risk Factors for Multidrug Resistance of Salmonella enterica Recovered from Village Chickens (Gallus gallus domesticus Linnaeus) and Other Environmental Sources in the Central and Southern Peninsular Malaysia. Antibiotics (Basel) (2020). https://doi.org/10.3390/antibiotics9100701. PMID: 33076451. AFDSI-ASSOC-11
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Bos taurus Introduced
Recorded for the species Salmonella enterica.
The three most common serotypes were Salmonella enterica subspecies enterica serotype Heidelberg (n = 200), Salmonella enterica subspecies enterica serotype Enteritidis (n = 170) and Salmonella enterica subspecies enterica serotype Typhimurium (n = 146).
Evidence: Gelaw AK, Nthaba P, Matle I. Detection of Salmonella from animal sources in South Africa between 2007 and 2014. J S Afr Vet Assoc (2018). https://doi.org/10.4102/jsava.v89i0.1643. PMID: 30456978. AFDSI-ASSOC-5
Curated by Dr. Ichrak Hayah (Mohammed V University in Rabat, Morocco) · ORCID 0000-0002-0783-9672. Reviewed by the African DSI DataBank.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-3206
File: GCF_054219035.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20511MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2266
File: GCF_040281405.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20035MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2113
File: GCF_019360895.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19163