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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
A strain of Salmonella enterica. Facts recorded for the species, such as pathogen–reservoir associations, are shown here too.
taxon 596Also known as: Salmonella enterica serovar Muenchen, Salmonella muenchen
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 5,480 of 224,002 GBIF records (2%) are from Africa (checked 10/11/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019514955.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 73x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2130 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019514965.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 77x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2131 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515425.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 81x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2147 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
41 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_008663135.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Kenya
Sequencing: ILLUMINA · SKESA v. 2.2 · 27x coverage
Released: 2019-09-23 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-3164 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: KE · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
34 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_019360315.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 83x coverage
Released: 2021-07-27 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2103 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515065.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 75x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2133 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
1 download
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019515505.1 · View at source ↗
Collection: Tanzania: Arusha
Sequencing: Illumina HiSeq · SPAdes v. 3.11 · 87x coverage
Released: 2021-08-10 · Submitted by: Massey University
publiccc0AFDSI-SEQ-2148 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Optimization of a Top-Down Proteomics Platform for Closely-Related Pathogenic Bacteria Discrimination (PXD019247) ↗AFDSI-PROJREF-886
BioImage Archive: (View on source archive ↗)AFDSI-CELL-6716
BioImage Archive: Serial-two photon tomography of Salmonella-infected mouse spleen (View on source archive ↗)AFDSI-CELL-6717
BioImage Archive: (View on source archive ↗)AFDSI-CELL-6713
BioImage Archive: Programmed Cell Death Pathways Coordinate Neutrophil and Macrophage Clearance in Zebrafish and Are Differentially Exploited by Salmonella Typhimurium (View on source archive ↗)AFDSI-CELL-6714
BioImage Archive: Reference raw BioImaging dataset to assess the phenotypic trait diversity of bryophytes within the family Scapaniaceae (View on source archive ↗)AFDSI-CELL-6715
BioImage Archive: In support of: Immunocompetent Cell Targeting by Food-Additive Titanium Dioxide (View on source archive ↗)AFDSI-CELL-6718
BioImage Archive: Estimating phenotypic traits with morphometry from 16 specimens of thallose liverworts of biological soil crusts collected in Southern Sweden and Germany (View on source archive ↗)AFDSI-CELL-6719
BioImage Archive: An Rhs effector uses distinct target cell functions to intoxicate bacterial and fungal competitors (View on source archive ↗)AFDSI-CELL-6720
BioImage Archive: A bench-top Dark-Root device built with LEGO® bricks enables a non-invasive plant root development analysis in soil conditions mirroring nature (View on source archive ↗)AFDSI-CELL-6721
BioImage Archive: The European Reference Genome Atlas - COPO submission (View on source archive ↗)AFDSI-CELL-6722
2,196 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A real, citation-backed link between this species and a documented pathogen or wildlife reservoir host — see the Pathogen-Reservoir page (under One Health) for the full pilot list.
Known reservoir host: Agama agama Endemic to Africa
Recorded for the species Salmonella enterica.
Landmark study establishing Agama agama as a natural intestinal host reservoir for Salmonella enterica
Evidence: COLLARD P, MONTEFIORE D. The agama lizard as reservoir of Salmonellae in Nigeria. Nature (1957). https://doi.org/10.1038/179164b0. PMID: 13400133. AFDSI-ASSOC-13
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Sus scrofa Native to Africa
Recorded for the species Salmonella enterica.
Recovered Salmonella enterica from ileocecal lymph nodes (26.0%), carcass surface swabs (16.0%), and pork meat (14.0%) of 100 slaughtered pigs
Evidence: Gomes-Neves E, Antunes P, Tavares A, Themudo P, Cardoso MF, Gärtner F, Costa JM, Peixe L. Salmonella cross-contamination in swine abattoirs in Portugal: Carcasses, meat and meat handlers. Int J Food Microbiol (2012). https://doi.org/10.1016/j.ijfoodmicro.2012.04.015. PMID: 22607810. AFDSI-ASSOC-12
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2103
File: GCF_019360315.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19153MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2148
File: GCA_019515505.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-16532There are more related species. Open the species tree to see them all.
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Gallus gallus domesticus Linnaeus Introduced
Recorded for the species Salmonella enterica.
Isolated 34 Salmonella enterica strains across 8 serotypes from cloacal swabs and farm environments of free-range village chickens (Gallus gallus)
Evidence: Mohammed Jajere S, Hassan L, Zakaria Z, Abu J, Abdul Aziz S. Antibiogram Profiles and Risk Factors for Multidrug Resistance of Salmonella enterica Recovered from Village Chickens (Gallus gallus domesticus Linnaeus) and Other Environmental Sources in the Central and Southern Peninsular Malaysia. Antibiotics (Basel) (2020). https://doi.org/10.3390/antibiotics9100701. PMID: 33076451. AFDSI-ASSOC-11
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Bos taurus Introduced
Recorded for the species Salmonella enterica.
The three most common serotypes were Salmonella enterica subspecies enterica serotype Heidelberg (n = 200), Salmonella enterica subspecies enterica serotype Enteritidis (n = 170) and Salmonella enterica subspecies enterica serotype Typhimurium (n = 146).
Evidence: Gelaw AK, Nthaba P, Matle I. Detection of Salmonella from animal sources in South Africa between 2007 and 2014. J S Afr Vet Assoc (2018). https://doi.org/10.4102/jsava.v89i0.1643. PMID: 30456978. AFDSI-ASSOC-5
Curated by Dr. Ichrak Hayah (Mohammed V University in Rabat, Morocco) · ORCID 0000-0002-0783-9672. Reviewed by the African DSI DataBank.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2147
File: GCA_019515425.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-16531MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2133
File: GCA_019515065.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-16519MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2131
File: GCA_019514965.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-16518