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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
cassava
taxon 3983Also known as: Manihot utilissima
Not yet assessed
Occurrence records: Recorded in Africa and elsewhere. 6,746 of 53,357 GBIF records (13%) are from Africa (checked 10/9/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
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First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI GCA_020916425.1 · View at source ↗
Collection: Uganda
Sequencing: PacBio Sequel · hifiasm v. 0.15 · 20x coverage
Released: 2021-11-22 · Submitted by: Functional Genomics Center Zurich
publiccc0AFDSI-SEQ-115 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: UG · PIC: unknown · MAT: unknown
GoaT: Scaffold assembly · 0.29 Gb · scaffold N50 9,856 · BUSCO 83.5% complete · View at source ↗
Publicly accessible — no request needed.
CYP79D1 — 542 aa
HNL — 258 aa
CYP79D2 — 541 aa
HAK5 — 808 aa
rbcL — 477 aa
psbA — 353 aa
rpoC1 — 680 aa
UGT85K5 — 483 aa
EF1 — 449 aa
rpoC2 — 1393 aa
Origin: hub
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First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI NM_001426228.1 · View at source ↗
Released: 2023-12-07
publiccc0AFDSI-SEQ-633 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_020916445.1 · View at source ↗
Collection: Uganda
Sequencing: PacBio Sequel · hifiasm v. 0.15 · 20x coverage
Released: 2021-11-22 · Submitted by: Functional Genomics Center Zurich
publiccc0AFDSI-SEQ-949 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: UG · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.64 Gb · scaffold N50 29,151,420 · 18 chromosomes · View at source ↗
Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Efficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes (PXD038813) ↗AFDSI-PROJREF-225
Vascular rays mediate radial assimilate transport in tuberous roots of Manihot esculenta (PXD014001) ↗AFDSI-PROJREF-226
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ANPDB: Rutin (View at source ↗) — Flavonoid; FlavonoidAFDSI-METABOLOMICS-90
ANPDB: Kaempferol-3-o-[6''-o-alpha-l-rhamnopyranosyl]-beta-d-glucopyranoside (View at source ↗) — Flavonoid; FlavonoidAFDSI-METABOLOMICS-91
MetaboLights: Variations in carbon flux allocation among cassava (Manihot esculenta) cultivars arise from balanced competition between starch accumulation and structural component development (View at source ↗)AFDSI-METABPROF-57
MetaboLights: Study on root metabolism of cassava TRV-MeCOMT8 (View at source ↗)AFDSI-METABPROF-58
MetaboLights: Metabolite profiling in LC-DAD using multivariate curve resolution: the alsace package in R (View at source ↗)AFDSI-METABPROF-59
KEGG: KEGG genome-based metabolic profile (mesc) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-117
pLDDT confidence: 98.6
Auto-synced from AlphaFold DB AF-P52705-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-5409-V2pLDDT confidence: unknown
Auto-synced from PDBe 1e89 · View at source ↗
publiccc_byAFDSI-STRUCT-5376-V1pLDDT confidence: 93.2
Auto-synced from AlphaFold DB AF-Q9M7B7-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-5410-V1pLDDT confidence: 78.7
Auto-synced from AlphaFold DB AF-A0A2C9VBV6-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-5411-V1pLDDT confidence: 96.9
Auto-synced from AlphaFold DB AF-B1NWF8-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-5412-V1camera_trap at Madagascar · Source: GBIF 6185568874 (View at source ↗)AFDSI-IMG-2385
camera_trap at Benin · Source: GBIF 6147169162 (View at source ↗)AFDSI-IMG-2391
camera_trap at Benin · Source: GBIF 6162995640 (View at source ↗)AFDSI-IMG-2393
camera_trap at Zambia · Source: GBIF 6171312980 (View at source ↗)AFDSI-IMG-2395
camera_trap at Mozambique · Source: GBIF 6413645804 (View at source ↗)AFDSI-IMG-2397
camera_trap at Rwanda · Source: GBIF 6178945666 (View at source ↗)AFDSI-IMG-2386
camera_trap at Seychelles · Source: GBIF 6188018888 (View at source ↗)AFDSI-IMG-2387
camera_trap at Kenya · Source: GBIF 6188089242 (View at source ↗)AFDSI-IMG-2388
camera_trap at Benin · Source: GBIF 6234193678 (View at source ↗)AFDSI-IMG-2389
camera_trap at Benin · Source: GBIF 6400208810 (View at source ↗)AFDSI-IMG-2390
6,749 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-949
File: GCA_020916445.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-21035MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-115
File: GCA_020916425.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20923There are more related species. Open the species tree to see them all.