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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
A strain of Escherichia coli. Facts recorded for the species, such as pathogen–reservoir associations, are shown here too.
taxon 3041057No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 10,169 of 194,630 GBIF records (5%) are from Africa (checked 10/11/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
28 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_029854395.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: North West University farm
Sequencing: Illumina · SPAdes v. v3.15.3 · 300x coverage
Released: 2023-04-23 · Submitted by: NORTH-WEST UNIVERSITY
publiccc0AFDSI-SEQ-2608 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
BioImage Archive: (View on source archive ↗)AFDSI-CELL-3384
BioImage Archive: Genome concentration limits cell growth and modulates proteome composition in Escherichia coli (View on source archive ↗)AFDSI-CELL-3386
BioImage Archive: Dataset for "Suppression of bacterial cell death underlies the antagonistic interaction between ciprofloxacin and tetracycline in Escherichia coli" (View on source archive ↗)AFDSI-CELL-3388
BioImage Archive: Images for "The role of the essential GTPase ObgE in regulating lipopolysaccharide synthesis in Escherichia coli" (View on source archive ↗)AFDSI-CELL-3390
BioImage Archive: Images for "The role of the essential GTPase ObgE in regulating lipopolysaccharide synthesis in Escherichia coli" (View on source archive ↗)AFDSI-CELL-3391
BioImage Archive: Apparent simplicity and emergent robustness in the control of the Escherichia coli cell cycle (View on source archive ↗)AFDSI-CELL-3383
BioImage Archive: (View on source archive ↗)AFDSI-CELL-3385
BioImage Archive: Genome concentration limits cell growth and modulates proteome composition in Escherichia coli (View on source archive ↗)AFDSI-CELL-3387
BioImage Archive: Dataset for "Suppression of bacterial cell death underlies the antagonistic interaction between ciprofloxacin and tetracycline in Escherichia coli" (View on source archive ↗)AFDSI-CELL-3389
BioImage Archive: Screening data: Exploring the genetic landscape of ciprofloxacin-induced DNA supercompaction in Escherichia coli (View on source archive ↗)AFDSI-CELL-3392
3,237 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A real, citation-backed link between this species and a documented pathogen or wildlife reservoir host — see the Pathogen-Reservoir page (under One Health) for the full pilot list.
Known reservoir host: Numididae Native to Africa
Recorded for the species Escherichia coli.
Obtained 68 caecal isolates of Escherichia coli from 10 chickens and 9 guinea fowl (Numididae)
Evidence: Foster-Nyarko E, Alikhan NF, Ravi A, Thomson NM, Jarju S, Kwambana-Adams BA, Secka A, O'Grady J, Antonio M, Pallen MJ. Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia. Microb Genom (2021). https://doi.org/10.1099/mgen.0.000484. PMID: 33253086. AFDSI-ASSOC-16
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Bos taurus Introduced
Recorded for the species Escherichia coli.
Isolated multidrug-resistant E. coli strain SCM-21 from milk samples of dairy cows (Bos taurus)
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2608
File: GCF_029854395.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19689There are more related species. Open the species tree to see them all.
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Gallus gallus Introduced
Recorded for the species Escherichia coli.
Genetically matched E. coli isolates (sharing MLST ST10 and ST117) recovered from the cecal contents of slaughtered abattoir chickens (79% of abattoir clonal group isolates)
Evidence: Bergeron CR, Prussing C, Boerlin P, Daignault D, Dutil L, Reid-Smith RJ, Zhanel GG, Manges AR. Chicken as reservoir for extraintestinal pathogenic Escherichia coli in humans, Canada. Emerg Infect Dis (2012). https://doi.org/10.3201/eid1803.111099. PMID: 22377351. AFDSI-ASSOC-8
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.