Loading…
Loading…
Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
A strain of Klebsiella pneumoniae. Facts recorded for the species, such as pathogen–reservoir associations, are shown here too.
taxon 72407No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 30 of 1,145 GBIF records (3%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
37 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_053232705.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria: Lagos
Sequencing: PacBio · SPAdes v. AUG-28 · 100x coverage
Released: 2025-10-28 · Submitted by: Inqaba Biotec West Africa
publiccc0AFDSI-SEQ-6321 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Phosphoproteome modulation by zinc and iron in Klebsiella pneumoniae reveals new virulence mechanisms and antibacterial targets (PXD072239) ↗AFDSI-PROJREF-720
Protein acetylation profiling of Klebsiella pneumoniae wild type and acyT knockout mutant by DIA-based proteomics (PXD070838) ↗AFDSI-PROJREF-722
Oxaborole mode of resistance in Klebsiella pneumoniae and Pseudomonas aeruginosa (PXD060318) ↗AFDSI-PROJREF-723
Convergent evolution of antibiotic resistance mechanisms between synthetic pyrrolobenzodiazepines (PBDs) and the naturally occurring albicidin in multidrug resistant Klebsiella pneumoniae (PXD059600) ↗AFDSI-PROJREF-724
Comparative DDA and DIA-PASEF proteomics profiling of cross-kingdom macrophage infection reveals new mechanisms driving pathogen virulence (PXD054527) ↗AFDSI-PROJREF-726
Deep phosphoproteomics of Klebsiella pneumoniae reveals HipA-mediated tolerance to ciprofloxacin (PXD051521) ↗AFDSI-PROJREF-727
Coexistence of Klebsiella pneumonia biofilms with Candida albicans in an acute pneumonia (PXD050494) ↗AFDSI-PROJREF-728
A cell-free strategy for profiling intracellular antibiotic sensitivity and resistance – characterising the proteomes of K. pneumoniae ATCC 13882, ST258-T1b and NJST258-1 and E. coli K-12 MG1655. (PXD046864) ↗AFDSI-PROJREF-729
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: HYPERICIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-2047
ChEMBL: EMODIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-2049
ChEMBL: CHEMBL446493 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IZ 0.0 mmAFDSI-METABOLOMICS-2053
ChEMBL: HYPERICIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-2046
ChEMBL: EMODIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ActivityAFDSI-METABOLOMICS-2048
ChEMBL: CHEMBL446493 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IZ 0.0 mmAFDSI-METABOLOMICS-2050
ChEMBL: CHEMBL454432 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IZ 0.0 mmAFDSI-METABOLOMICS-2051
ChEMBL: CHEMBL442627 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IZ 0.0 mmAFDSI-METABOLOMICS-2052
BioImage Archive: (View on source archive ↗)AFDSI-CELL-3729
BioImage Archive: (View on source archive ↗)AFDSI-CELL-3728
BioImage Archive: Deep learning recognises antibiotic modes of action from brightfield images (View on source archive ↗)AFDSI-CELL-3730
BioImage Archive: Deep learning recognises antibiotic modes of action from brightfield images (View on source archive ↗)AFDSI-CELL-3731
BioImage Archive: Simple imaging system for label-free identification of bacterial pathogens in resource-limited settings (View on source archive ↗)AFDSI-CELL-3732
BioImage Archive: Detection of Bacterial vs Inflammatory Acute Otitis Media using ICG-Maltotriose in Short-wave Infrared (SWIR) (View on source archive ↗)AFDSI-CELL-3733
BioImage Archive: Simple imaging system for label-free identification of bacterial pathogens in resource-limited settings (View on source archive ↗)AFDSI-CELL-3734
BioImage Archive: Unbiased homeologous recombination during pneumococcal transformation allows for multiple chromosomal integration events (View on source archive ↗)AFDSI-CELL-3735
BioImage Archive: A lipid biosynthesis node coordinates inducible spatial defense and enables metabolic preconditioning against biofilm infections (View on source archive ↗)AFDSI-CELL-3737
BioImage Archive: Holotomographic datasets in OME-Zarr format for compression benchmarking of holotomographic data (View on source archive ↗)AFDSI-CELL-3739
30 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A real, citation-backed link between this species and a documented pathogen or wildlife reservoir host — see the Pathogen-Reservoir page (under One Health) for the full pilot list.
Known reservoir host: Gallus gallus Introduced
Recorded for the species Klebsiella pneumoniae.
Klebsiella pneumoniae strain (KP411) recovered from the stool samples of poultry (Gallus gallus)
Evidence: Valiatti TB, Cayô R, Santos FF, Bessa-Neto FO, Brandão Silva RG, Veiga R, de Nazaré Miranda Bahia M, Guerra LMGD, Pignatari ACC, de Oliveira Souza C, Brasiliense DM, Gales AC, Guarani Network. Genomic Analysis of Klebsiella pneumoniae ST258 Strain Coproducing KPC-2 and CTX-M-14 Isolated from Poultry in the Brazilian Amazon Region. Antibiotics (Basel) (2022). https://doi.org/10.3390/antibiotics11121835. PMID: 36551493. AFDSI-ASSOC-18
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6321
File: GCF_053232705.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20488