Loading…
Loading…
Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 571Also known as: Bacillus oxytocus perniciosus
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 47 of 1,090 GBIF records (4%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
35 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_902807185.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Rwanda
Sequencing: ILLUMINA · shovill 1.0.4/SPAdes 3.13.1 · 388x coverage
Released: 2020-02-28 · Submitted by: University of Greifswald, Institute of Pharmacy
publiccc0AFDSI-SEQ-5994 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: RW · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
37 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_004310645.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: KwaZulu-Natal
Sequencing: Illumina MiSeq · CLC NGS Cell v. 2018-09-01T00:00:00 · 99x coverage
Released: 2019-02-27 · Submitted by: University of KwaZulu-Natal (UKZN), South Africa
publiccc0AFDSI-SEQ-6302 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_902807145.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Rwanda
Sequencing: ILLUMINA · shovill 1.0.4/SPAdes 3.13.1 · 378x coverage
Released: 2020-02-28 · Submitted by: University of Greifswald, Institute of Pharmacy
publiccc0AFDSI-SEQ-5993 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: RW · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
cobA — 457 aa
tesA — 207 aa
cobA — 468 aa
fadB — 729 aa
tesB — 287 aa
hldE — 477 aa
nudI — 141 aa
hmpA — 396 aa
trpD — 531 aa
thiI — 482 aa
Origin: hub
0 downloads
First synced: 11/8/2026 · Last updated: 11/8/2026
Source: NCBI U54763.1 · View at source ↗
Released: 1996-05-16
publiccc0AFDSI-SEQ-6537 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
AlphaFold DB proteome: UP000673434 ↗
PaxDb — real per-protein abundance
AKL33365.1 (571.AB185_05295) — abundance 30349AFDSI-PROTEOMICS-1251
hupA (571.AB185_05695) — abundance 25532AFDSI-PROTEOMICS-1252
ompA_2 (571.AB185_25910) — abundance 20642AFDSI-PROTEOMICS-1253
mdh (571.AB185_09780) — abundance 19212AFDSI-PROTEOMICS-1254
tnaA (571.AB185_32730) — abundance 15222AFDSI-PROTEOMICS-1255
hns (571.AB185_18835) — abundance 13829AFDSI-PROTEOMICS-1256
gapA-2 (571.AB185_24215) — abundance 11740AFDSI-PROTEOMICS-1257
tuf (571.AB185_05825) — abundance 10878AFDSI-PROTEOMICS-1258
tuf-2 (571.AB185_09355) — abundance 10878AFDSI-PROTEOMICS-1259
uspA_1 (571.AB185_08670) — abundance 10723AFDSI-PROTEOMICS-1260
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Local and Global Breathing Motions Prime the Access to Buried Binding Site in an Antibiotic-Sequestering Protein (PXD061296) ↗AFDSI-PROJREF-711
High-Intensity Comparative and Quantitative Proteomics of Histamine-Forming and Other Biogenic Amine-Producing Bacteria Present in Seafood (PXD043997) ↗AFDSI-PROJREF-712
Shotgun Proteomics Analysis, Functional Networks and Peptide Biomarkers for Biogenic Amine-producing Bacteria (PXD039320) ↗AFDSI-PROJREF-713
Pathogen-pathogen interactions in the microbiome, a way to soothe virulence? (PXD017208) ↗AFDSI-PROJREF-714
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL353657 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 41.0AFDSI-METABOLOMICS-1961
ChEMBL: CHEMBL2303663 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 32.0 ug.mL-1AFDSI-METABOLOMICS-1947
ChEMBL: CIPROFLOXACIN HYDROCHLORIDE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-1948
ChEMBL: CHEMBL128754 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-1949
ChEMBL: CHEMBL2303747 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 32.0 ug.mL-1AFDSI-METABOLOMICS-1951
ChEMBL: CHEMBL2303664 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 32.0 ug.mL-1AFDSI-METABOLOMICS-1953
ChEMBL: CHEMBL128754 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-1950
ChEMBL: CHEMBL2303747 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 32.0 ug.mL-1AFDSI-METABOLOMICS-1952
ChEMBL: CHEMBL2303664 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 32.0 ug.mL-1
MetaboLights: Symbiotic bacteria-derived organic acids protect Delia antiqua larvae from entomopathogenic fungal infection (View at source ↗)AFDSI-METABPROF-256
MetaboLights: Chemotherapy Modulation by a Cancer-Associated Microbiota Metabolite (Targeted metabolomics - 2methylisocitrate) (View at source ↗)AFDSI-METABPROF-257
MetaboLights: Bacterial profiles analysed by REIMS using Xevo G2-XS (View at source ↗)AFDSI-METABPROF-258
MetaboLights: Analysis of 3274 bacterial isolates by rapid evaporative ionisation mass spectrometry (REIMS) (View at source ↗)AFDSI-METABPROF-259
pLDDT confidence: 88.7
Auto-synced from AlphaFold DB AF-A0AAD3ULR0-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-16741-V1pLDDT confidence: 90.7
Auto-synced from AlphaFold DB AF-A0AAI9GRV1-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-16742-V1pLDDT confidence: 88.3
Auto-synced from AlphaFold DB AF-A0AAP2BFQ4-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-16743-V1pLDDT confidence: 95.5
Auto-synced from AlphaFold DB AF-A0AAP2FNS6-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-16744-V1pLDDT confidence: 95.2
Auto-synced from AlphaFold DB AF-A0AAD3UGZ7-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-16745-V1BioImage Archive: A lipid biosynthesis node coordinates inducible spatial defense and enables metabolic preconditioning against biofilm infections (View on source archive ↗)AFDSI-CELL-3673
BioImage Archive: A lipid biosynthesis node coordinates inducible spatial defense and enables metabolic preconditioning against biofilm infections (View on source archive ↗)AFDSI-CELL-3674
BioImage Archive: ChemoTrack: A comprehensive dataset linking single-cell migration trajectories to precisely defined chemotactic signals (View on source archive ↗)AFDSI-CELL-3678
BioImage Archive: Holotomographic datasets in OME-Zarr format for compression benchmarking of holotomographic data (View on source archive ↗)AFDSI-CELL-3680
BioImage Archive: Holotomographic datasets in OME-Zarr format for compression benchmarking of holotomographic data (View on source archive ↗)AFDSI-CELL-3679
BioImage Archive: Label free imaging reveals that cellular physiology is encoded in bacterial community architecture (View on source archive ↗)AFDSI-CELL-3683
BioImage Archive: Label free imaging reveals that cellular physiology is encoded in bacterial community architecture (View on source archive ↗)AFDSI-CELL-3684
BioImage Archive: Simple imaging system for label-free identification of bacterial pathogens in resource-limited settings (View on source archive ↗)AFDSI-CELL-3671
BioImage Archive: Simple imaging system for label-free identification of bacterial pathogens in resource-limited settings (View on source archive ↗)AFDSI-CELL-3672
BioImage Archive: Deep learning recognises antibiotic modes of action from brightfield images (View on source archive ↗)AFDSI-CELL-3675
1 real GBIF-recorded occurrence across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5994
File: GCF_902807185.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20746MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5993
File: GCF_902807145.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20742There are more related species. Open the species tree to see them all.
ChEMBL: CHEMBL2303748 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 32.0 ug.mL-1AFDSI-METABOLOMICS-1956
ChEMBL: OFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.1 ug.mL-1AFDSI-METABOLOMICS-1958
ChEMBL: CHEMBL173793 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 130.0AFDSI-METABOLOMICS-1960
ChEMBL: CHEMBL2303748 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 32.0 ug.mL-1AFDSI-METABOLOMICS-1955
ChEMBL: OFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.1 ug.mL-1AFDSI-METABOLOMICS-1957
ChEMBL: CHEMBL173793 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 130.0AFDSI-METABOLOMICS-1959
ChEMBL: CHEMBL353657 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 41.0AFDSI-METABOLOMICS-1962
ChEMBL: CHEMBL86191 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 80.0AFDSI-METABOLOMICS-1965
ChEMBL: CHEMBL368400 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 630.0AFDSI-METABOLOMICS-1967
ChEMBL: CHEMBL176909 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 0.69AFDSI-METABOLOMICS-1969
ChEMBL: CHEMBL368062 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 360.0AFDSI-METABOLOMICS-1971
ChEMBL: CHEMBL176460 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 120.0AFDSI-METABOLOMICS-1972
ChEMBL: CHEMBL312728 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 6.3AFDSI-METABOLOMICS-1975
ChEMBL: CHEMBL173839 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 380.0AFDSI-METABOLOMICS-1977
ChEMBL: VABORBACTAM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.25 ug.mL-1AFDSI-METABOLOMICS-1979
ChEMBL: CHEMBL86191 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 80.0AFDSI-METABOLOMICS-1963
ChEMBL: CHEMBL172667 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 350.0AFDSI-METABOLOMICS-1964
ChEMBL: CHEMBL368400 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 630.0AFDSI-METABOLOMICS-1966
ChEMBL: CHEMBL176909 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 0.69AFDSI-METABOLOMICS-1968
ChEMBL: CHEMBL368062 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 360.0AFDSI-METABOLOMICS-1970
ChEMBL: CHEMBL176460 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 120.0AFDSI-METABOLOMICS-1973
ChEMBL: CHEMBL312728 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 6.3AFDSI-METABOLOMICS-1974
ChEMBL: CHEMBL173839 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Relative hydrolysis rate 380.0AFDSI-METABOLOMICS-1976
ChEMBL: VABORBACTAM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.25 ug.mL-1AFDSI-METABOLOMICS-1978
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6302
File: GCA_004310645.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-15480