Vibrio harveyi

taxon 669

Also known as: Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, Lucibacterium harveyi, Photobacterium harveyi, Pseudomonas harveyi, Vibrio carchariae, Vibrio trachuri

Indigenous / local names

No local or indigenous names recorded yet.

Status in Africa

Not yet assessed

Occurrence records: Recorded mostly outside Africa. 12 of 1,922 GBIF records (1%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.

Taxonomic classification

cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio harveyi

View at source ↗

Related species in the DataBank

Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.

Also in Vibrio harveyi group

Vibrio alginolyticus · 7 genomes, 1 transcriptome, 50 proteins, 90 protein structures, 7 chemical profiles, 2 metabolic profiles, 2 cellular and molecular images
Vibrio diabolicus · 2 genomes, 50 proteins, 68 protein structures, 6 chemical profiles, 1 metabolic profile, 2 cellular and molecular images
Vibrio parahaemolyticus · 7 genomes, 1 transcriptome, 10 chemical profiles, 2 metabolic profiles, 2 cellular and molecular images
Vibrio parahaemolyticus B-265 · 1 genome, 4 cellular and molecular images

Also in Vibrio

Vibrio cholerae · 15 genomes, 1 transcriptome, 27 chemical profiles, 1 metabolic profile, 6 cellular and molecular images
Vibrio cholerae O1 str. 2010EL-1749 · 1 genome, 22 cellular and molecular images
Vibrio cholerae O1 str. 2011EL-1137 · 1 genome, 22 cellular and molecular images
Vibrio cholerae O1 str. Inaba G4222 · 1 genome, 22 cellular and molecular images
Vibrio sp. CM17 · 1 genome, 10 cellular and molecular images
Vibrio tetraodonis · 2 genomes, 2 cellular and molecular images

Also in

Genome browser

Sequence records

genome (fasta)

mirrored

Origin: hub

76 downloads

First synced: 10/11/2026 · Last updated: 10/12/2026

Source: NCBI GCF_024531115.1 · View at source ↗

Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)

Collection: Mauritius:Pointe aux Piments

Sequencing: Illumina MiSeq · SPAdes v. 3.13.1 · 100x coverage

Released: 2022-08-04 · Submitted by: University of Mauritius

publiccc0AFDSI-SEQ-6493 Benefit-sharing under CBD Decision 16/2 and national frameworks →

Country of origin: MU · PIC: unknown · MAT: unknown

GoaT: no record for this species (not eukaryotic, or not yet sequenced)

Publicly accessible — no request needed.

genome (fasta)

mirrored

Origin: hub

76 downloads

First synced: 10/11/2026 · Last updated: 10/12/2026

Source: NCBI GCF_024530995.1 · View at source ↗

Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)

Collection: Mauritius:Grand Gaube

Sequencing: Illumina MiSeq · SPAdes v. 3.13.1 · 100x coverage

Released: 2022-08-04 · Submitted by: University of Mauritius

publiccc0AFDSI-SEQ-6494 Benefit-sharing under CBD Decision 16/2 and national frameworks →

Country of origin: MU · PIC: unknown · MAT: unknown

GoaT: no record for this species (not eukaryotic, or not yet sequenced)

Publicly accessible — no request needed.

genome (fasta)

mirrored

Origin: hub

79 downloads

First synced: 10/11/2026 · Last updated: 10/12/2026

Source: NCBI GCF_028898685.1 · View at source ↗

Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)

Collection: Tunisia: not applicable

Sequencing: Illumina HiSeq; Oxford Nanopore MinION · Flye v. 2.9.1. · 100x coverage

Released: 2023-03-02 · Submitted by: Croatian Veterinary Institute

publiccc0AFDSI-SEQ-6492 Benefit-sharing under CBD Decision 16/2 and national frameworks →

Country of origin: TN · PIC: unknown · MAT: unknown

GoaT: no record for this species (not eukaryotic, or not yet sequenced)

Publicly accessible — no request needed.

Proteins (50)

nqrM — 77 aa

fadB — 723 aa

carB — 1077 aa

coaBC — 400 aa

fadJ — 704 aa

protein 17356 — 819 aa

pfkA — 320 aa

murE — 491 aa

nnrE — 511 aa

pyrG — 546 aa

transcriptome (fasta)

mirrored

Origin: hub

0 downloads

First synced: 11/8/2026 · Last updated: 11/8/2026

Source: NCBI MN510468.1 · View at source ↗

Released: 2020-05-20

publiccc0AFDSI-SEQ-6570 Country of origin not recorded: see how benefit-sharing works →

Publicly accessible — no request needed.

AlphaFold DB proteome: UP000067422 ↗

Proteomics (external sources)

PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)

Targeting Campylobacter signalling to modulate biofilm dynamics (J4-3088) (PXD067187) ↗AFDSI-PROJREF-983

Three Microbial Musketeers of the Seas: Shewanella baltica, Aliivibrio fischeri and Vibrio harveyi, and their adaptation to different salinity probed by a proteomic approach (PXD029628) ↗AFDSI-PROJREF-984

Metaproteomics of an artificial microbiota reference (PXD005776) ↗AFDSI-PROJREF-985

Metaproteomics of an artificial microbiota reference with LTQ Orbitrap-XL (PXD005759) ↗AFDSI-PROJREF-986

Proteomics of 24 bacterial strains from an artificial microbiota reference to evaluate metaproteomics (PXD005728) ↗AFDSI-PROJREF-987

Chemical Profiles (external sources)

ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.

ChEMBL: PENTOXIFYLLINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 278.0AFDSI-METABOLOMICS-2978

ChEMBL: PYROGALLOL (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2000.0 nMAFDSI-METABOLOMICS-2979

ChEMBL: TYRPHOSTIN 25 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 3000.0 nMAFDSI-METABOLOMICS-2980

ChEMBL: GALLIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 50000.0 nMAFDSI-METABOLOMICS-2983

ChEMBL: CHEMBL1527 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4000.0 nMAFDSI-METABOLOMICS-2985

ChEMBL: CHEMBL535194 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 22000.0 nMAFDSI-METABOLOMICS-2987

ChEMBL: CHEMBL254710 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 12000.0 nMAFDSI-METABOLOMICS-2989

ChEMBL: CHEMBL220779 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 61000.0 nMAFDSI-METABOLOMICS-2990

ChEMBL: CHEMBL400737 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 3000.0 nM

Metabolic Profiles (external sources)

MetaboLights: Effects of Scytosiphon lomentaria Polysaccharides on Vibrio harveyi (View at source ↗)AFDSI-METABPROF-338

KEGG: KEGG genome-based metabolic profile (vhr) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-439

Protein Structures

msrB — v2

pLDDT confidence: 90.4

Auto-synced from AlphaFold DB AF-A0A2S0SEP3-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-19548-V2

nqrM — v2

pLDDT confidence: 74.4

Auto-synced from AlphaFold DB AF-K5TWP9-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-19518-V2

rhlE — v2

pLDDT confidence: 76.6

Auto-synced from AlphaFold DB AF-A0A3A1PSI5-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-19550-V2

deoD — v2

pLDDT confidence: 96.6

Auto-synced from AlphaFold DB AF-K5UPA4-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-19534-V2

hutG — v2

pLDDT confidence: 94.7

Auto-synced from AlphaFold DB AF-A0A3A1PTV8-F1 · View at source ↗

publiccc_byAFDSI-STRUCT-19552-V2

Cellular & Molecular Imaging (external sources)

BioImage Archive: Physical encounters impose a consistency-amount tradeoff on bacterial group formation in marine environments (View on source archive ↗)AFDSI-CELL-7506

BioImage Archive: Label free imaging reveals that cellular physiology is encoded in bacterial community architecture (View on source archive ↗)AFDSI-CELL-7507

Geographic range (Africa)

12 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.

This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.

Derived analysis results

A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.

GCF_028898685.1

MegaSSR — ssr_discovery

derived from genome record AFDSI-SEQ-6492

File: GCF_028898685.1_megassr_results.tar.gz

Tool version: MegaSSR v3.0.0 (UM6P patched)

Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗

cc_by public Country of origin not recorded: see how benefit-sharing works →

AFDSI-ANALYSIS-19668

GCF_024531115.1

MegaSSR — ssr_discovery

derived from genome record AFDSI-SEQ-6493

File: GCF_024531115.1_megassr_results.tar.gz

Tool version: MegaSSR v3.0.0 (UM6P patched)

Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗

cc_by public Country of origin not recorded: see how benefit-sharing works →

AFDSI-ANALYSIS-19405

Gammaproteobacteria

Aeromonas aquatica · 1 genome, 12 proteins, 11 protein structures, 1 cellular and molecular image
Aeromonas caviae · 1 genome, 1 transcriptome, 54 proteins, 55 protein structures, 14 chemical profiles, 1 metabolic profile
Aeromonas hydrophila · 2 genomes, 1 transcriptome, 20 proteins, 23 protein structures, 46 chemical profiles, 1 metabolic profile
Aeromonas jandaei · 1 genome, 51 proteins, 26 protein structures, 1 metabolic profile
Aeromonas sp. · 1 genome, 20 proteins, 18 protein structures, 18 chemical profiles, 18 cellular and molecular images
Aeromonas taiwanensis · 1 genome, 50 proteins, 96 protein structures
Aeromonas veronii · 6 genomes, 1 transcriptome, 52 proteins, 55 protein structures, 20 chemical profiles, 3 metabolic profiles
Citrobacter amalonaticus · 1 genome, 1 transcriptome, 50 proteins, 31 protein structures, 50 proteomics profiles, 7 chemical profiles, 1 metabolic profile, 4 cellular and molecular images
Citrobacter braakii · 3 genomes, 1 transcriptome, 50 proteins, 37 protein structures, 14 chemical profiles, 2 metabolic profiles, 4 cellular and molecular images
Citrobacter cronae · 4 genomes, 50 proteins, 32 protein structures, 4 cellular and molecular images
Citrobacter freundii · 4 genomes, 1 transcriptome, 50 proteins, 40 protein structures, 67 chemical profiles, 3 metabolic profiles, 3 cellular and molecular images
Citrobacter portucalensis · 23 genomes, 50 proteins, 41 protein structures, 1 metabolic profile, 4 cellular and molecular images
Citrobacter sp. Awk 2 · 1 genome, 17 cellular and molecular images
Citrobacter sp. Awk 4 · 1 genome, 20 cellular and molecular images

There are more related species. Open the species tree to see them all.

AFDSI-METABOLOMICS-2993

ChEMBL: CHEMBL254077 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4000.0 nMAFDSI-METABOLOMICS-2994

ChEMBL: CHEMBL254077 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4000.0 nMAFDSI-METABOLOMICS-2995

ChEMBL: DAPHNETIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 12000.0 nMAFDSI-METABOLOMICS-2996

ChEMBL: DAPHNETIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 12000.0 nMAFDSI-METABOLOMICS-2997

ChEMBL: CHEMBL1823950 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 62300.0 nMAFDSI-METABOLOMICS-2998

ChEMBL: CHEMBL1823950 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 62300.0 nMAFDSI-METABOLOMICS-2999

ChEMBL: CHEMBL1823949 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2400.0 nMAFDSI-METABOLOMICS-3000

ChEMBL: CHEMBL1823948 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2600.0 nMAFDSI-METABOLOMICS-3001

ChEMBL: CHEMBL1824171 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4000.0 nMAFDSI-METABOLOMICS-3030

ChEMBL: CHEMBL500339 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 6000.0 nMAFDSI-METABOLOMICS-3031

ChEMBL: CAFFEINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 293.0AFDSI-METABOLOMICS-2977

ChEMBL: PYROGALLOL (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2000.0 nMAFDSI-METABOLOMICS-2981

ChEMBL: GALLIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 50000.0 nMAFDSI-METABOLOMICS-2982

ChEMBL: CHEMBL1527 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4000.0 nMAFDSI-METABOLOMICS-2984

ChEMBL: CHEMBL535194 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 22000.0 nMAFDSI-METABOLOMICS-2986

ChEMBL: CHEMBL254710 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 12000.0 nMAFDSI-METABOLOMICS-2988

ChEMBL: CHEMBL220779 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 61000.0 nMAFDSI-METABOLOMICS-2991

ChEMBL: CHEMBL400737 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 3000.0 nMAFDSI-METABOLOMICS-2992

ChEMBL: CHEMBL1823949 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2400.0 nMAFDSI-METABOLOMICS-3002

ChEMBL: CHEMBL1823947 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2900.0 nMAFDSI-METABOLOMICS-3004

ChEMBL: CHEMBL1823946 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2700.0 nMAFDSI-METABOLOMICS-3006

ChEMBL: CHEMBL5265893 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2700.0 nMAFDSI-METABOLOMICS-3008

ChEMBL: CHEMBL5271255 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2600.0 nMAFDSI-METABOLOMICS-3010

ChEMBL: CHEMBL5273229 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 36.0 %AFDSI-METABOLOMICS-3012

ChEMBL: CHEMBL2228570 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 35.0 %AFDSI-METABOLOMICS-3014

ChEMBL: CHEMBL2228452 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 87.0 %AFDSI-METABOLOMICS-3017

ChEMBL: CHEMBL451328 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 94.0 %AFDSI-METABOLOMICS-3019

ChEMBL: TRANS-2-DECENAL (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 90.0 %AFDSI-METABOLOMICS-3020

ChEMBL: CHEMBL448058 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 71.0 %AFDSI-METABOLOMICS-3023

ChEMBL: CHEMBL4062155 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 80.0 %AFDSI-METABOLOMICS-3037

ChEMBL: CHEMBL1823947 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2900.0 nMAFDSI-METABOLOMICS-3003

ChEMBL: CHEMBL1823946 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2700.0 nMAFDSI-METABOLOMICS-3005

ChEMBL: CHEMBL5265893 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2700.0 nMAFDSI-METABOLOMICS-3007

ChEMBL: CHEMBL5271255 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 2600.0 nMAFDSI-METABOLOMICS-3009

ChEMBL: CHEMBL5271044 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 17.0 %AFDSI-METABOLOMICS-3011

ChEMBL: CHEMBL5273229 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 36.0 %AFDSI-METABOLOMICS-3013

ChEMBL: CHEMBL2228570 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 35.0 %AFDSI-METABOLOMICS-3015

ChEMBL: CHEMBL2228452 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 87.0 %AFDSI-METABOLOMICS-3016

ChEMBL: CHEMBL451328 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 94.0 %AFDSI-METABOLOMICS-3018

ChEMBL: TRANS-2-DECENAL (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 90.0 %AFDSI-METABOLOMICS-3021

ChEMBL: CHEMBL448058 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 71.0 %AFDSI-METABOLOMICS-3022

ChEMBL: CHEMBL4062155 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 80.0 %AFDSI-METABOLOMICS-3024

ChEMBL: CHEMBL5281370 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 100.0 %AFDSI-METABOLOMICS-3025

ChEMBL: CHEMBL206566 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 100.0 %AFDSI-METABOLOMICS-3026

ChEMBL: CHEMBL1824168 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 9000.0 nMAFDSI-METABOLOMICS-3027

ChEMBL: CHEMBL1824169 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 5000.0 nMAFDSI-METABOLOMICS-3028

ChEMBL: CHEMBL1824170 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4000.0 nMAFDSI-METABOLOMICS-3029

ChEMBL: CHEMBL5273954 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 80.0 %AFDSI-METABOLOMICS-3032

ChEMBL: CHEMBL5280333 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 20.0 %AFDSI-METABOLOMICS-3033

ChEMBL: CHEMBL5288808 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 20.0 %AFDSI-METABOLOMICS-3034

ChEMBL: CHEMBL5289148 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 40.0 %AFDSI-METABOLOMICS-3035

ChEMBL: CHEMBL1824159 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition 60.0 %AFDSI-METABOLOMICS-3036

GCF_024530995.1

MegaSSR — ssr_discovery

derived from genome record AFDSI-SEQ-6494

File: GCF_024530995.1_megassr_results.tar.gz

Tool version: MegaSSR v3.0.0 (UM6P patched)

Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗

cc_by public Country of origin not recorded: see how benefit-sharing works →

AFDSI-ANALYSIS-19404