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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
A strain of Salmonella enterica. Facts recorded for the species, such as pathogen–reservoir associations, are shown here too.
taxon 28144Also known as: Salmonella derby, Salmonella enterica serovar Derby
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 5,480 of 224,002 GBIF records (2%) are from Africa (checked 10/11/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
30 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_002066555.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: Illumina HiSeq · SPAdes v. 3.9.0 · 117x coverage
Released: 2017-03-22 · Submitted by: University of California at Davis
publiccc0AFDSI-SEQ-1925 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_040280945.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria: Modern market, Benue State
Sequencing: Illumina · SPAdes v. 1 · 100x coverage
Released: 2024-06-24 · Submitted by: NATIONAL VETERINARY RESEARCH INSTITUTE
publiccc0AFDSI-SEQ-2248 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
31 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_040281385.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria: Modern market, Benue State
Sequencing: Illumina · SPAdes v. 1 · 100x coverage
Released: 2024-06-24 · Submitted by: NATIONAL VETERINARY RESEARCH INSTITUTE
publiccc0AFDSI-SEQ-2265 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
32 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055674135.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2386 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
32 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055677915.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2387 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055678175.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2393 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055679295.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2394 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055679355.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2396 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055679515.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2400 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
34 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055679615.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2402 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055679755.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2406 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055679775.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2407 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
41 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_006336875.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 22x coverage
Released: 2019-06-13 · Submitted by: Center for Food Safety and Applied Nutrition
publiccc0AFDSI-SEQ-3691 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_055679735.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Burkina Faso
Sequencing: Illumina MiSeq · SKESA v. 2.4.0 · 30x coverage
Released: 2026-03-04 · Submitted by: Bureau of Microbial Hazards - Health Canada
publiccc0AFDSI-SEQ-2405 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BF · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
BioImage Archive: The European Reference Genome Atlas - COPO submission (View on source archive ↗)AFDSI-CELL-6004
BioImage Archive: (View on source archive ↗)AFDSI-CELL-5988
BioImage Archive: Programmed Cell Death Pathways Coordinate Neutrophil and Macrophage Clearance in Zebrafish and Are Differentially Exploited by Salmonella Typhimurium (View on source archive ↗)AFDSI-CELL-5990
BioImage Archive: Reference raw BioImaging dataset to assess the phenotypic trait diversity of bryophytes within the family Scapaniaceae (View on source archive ↗)AFDSI-CELL-5992
BioImage Archive: Serial-two photon tomography of Salmonella-infected mouse spleen (View on source archive ↗)AFDSI-CELL-5994
BioImage Archive: In support of: Immunocompetent Cell Targeting by Food-Additive Titanium Dioxide (View on source archive ↗)AFDSI-CELL-5996
BioImage Archive: Estimating phenotypic traits with morphometry from 16 specimens of thallose liverworts of biological soil crusts collected in Southern Sweden and Germany (View on source archive ↗)AFDSI-CELL-5998
BioImage Archive: (View on source archive ↗)AFDSI-CELL-5989
BioImage Archive: Programmed Cell Death Pathways Coordinate Neutrophil and Macrophage Clearance in Zebrafish and Are Differentially Exploited by Salmonella Typhimurium (View on source archive ↗)AFDSI-CELL-5991
BioImage Archive: Reference raw BioImaging dataset to assess the phenotypic trait diversity of bryophytes within the family Scapaniaceae (View on source archive ↗)AFDSI-CELL-5993
2,196 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A real, citation-backed link between this species and a documented pathogen or wildlife reservoir host — see the Pathogen-Reservoir page (under One Health) for the full pilot list.
Known reservoir host: Agama agama Endemic to Africa
Recorded for the species Salmonella enterica.
Landmark study establishing Agama agama as a natural intestinal host reservoir for Salmonella enterica
Evidence: COLLARD P, MONTEFIORE D. The agama lizard as reservoir of Salmonellae in Nigeria. Nature (1957). https://doi.org/10.1038/179164b0. PMID: 13400133. AFDSI-ASSOC-13
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Sus scrofa Native to Africa
Recorded for the species Salmonella enterica.
Recovered Salmonella enterica from ileocecal lymph nodes (26.0%), carcass surface swabs (16.0%), and pork meat (14.0%) of 100 slaughtered pigs
Evidence: Gomes-Neves E, Antunes P, Tavares A, Themudo P, Cardoso MF, Gärtner F, Costa JM, Peixe L. Salmonella cross-contamination in swine abattoirs in Portugal: Carcasses, meat and meat handlers. Int J Food Microbiol (2012). https://doi.org/10.1016/j.ijfoodmicro.2012.04.015. PMID: 22607810. AFDSI-ASSOC-12
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2265
File: GCF_040281385.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20034MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2248
File: GCF_040280945.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20014There are more related species. Open the species tree to see them all.
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Gallus gallus domesticus Linnaeus Introduced
Recorded for the species Salmonella enterica.
Isolated 34 Salmonella enterica strains across 8 serotypes from cloacal swabs and farm environments of free-range village chickens (Gallus gallus)
Evidence: Mohammed Jajere S, Hassan L, Zakaria Z, Abu J, Abdul Aziz S. Antibiogram Profiles and Risk Factors for Multidrug Resistance of Salmonella enterica Recovered from Village Chickens (Gallus gallus domesticus Linnaeus) and Other Environmental Sources in the Central and Southern Peninsular Malaysia. Antibiotics (Basel) (2020). https://doi.org/10.3390/antibiotics9100701. PMID: 33076451. AFDSI-ASSOC-11
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Bos taurus Introduced
Recorded for the species Salmonella enterica.
The three most common serotypes were Salmonella enterica subspecies enterica serotype Heidelberg (n = 200), Salmonella enterica subspecies enterica serotype Enteritidis (n = 170) and Salmonella enterica subspecies enterica serotype Typhimurium (n = 146).
Evidence: Gelaw AK, Nthaba P, Matle I. Detection of Salmonella from animal sources in South Africa between 2007 and 2014. J S Afr Vet Assoc (2018). https://doi.org/10.4102/jsava.v89i0.1643. PMID: 30456978. AFDSI-ASSOC-5
Curated by Dr. Ichrak Hayah (Mohammed V University in Rabat, Morocco) · ORCID 0000-0002-0783-9672. Reviewed by the African DSI DataBank.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-1925
File: GCF_002066555.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-18503MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2407
File: GCA_055679775.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-18071MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2406
File: GCA_055679755.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-18070