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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
Asian cultivated rice
taxon 4530Not yet assessed
Occurrence records: Recorded in Africa and elsewhere. 46,572 of 401,426 GBIF records (12%) are from Africa (checked 10/9/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
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First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI GCA_936158435.1 · View at source ↗
Collection: Gambia
Sequencing: HiSeq X · Supernova2 · 63x coverage
Released: 2022-04-16 · Submitted by: University of Zurich
publiccc0AFDSI-SEQ-131 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: GM · PIC: unknown · MAT: unknown
GoaT: Scaffold assembly · 0.31 Gb · scaffold N50 14,575 · BUSCO 94.7% complete · View at source ↗
Publicly accessible — no request needed.
CWZF7 — 1600 aa
BCL1 — 291 aa
NFYC2 — 246 aa
FSM — 940 aa
CARB — 1172 aa
ROS1A — 1952 aa
P5CS1 — 716 aa
NSHB2 — 169 aa
NSHB1 — 166 aa
DJA7B — 447 aa
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609685.1 · View at source ↗
Collection: Madagascar
Sequencing: Illumina · SPAdes 3.11.1 · 102x coverage
Released: 2019-01-12 · Submitted by: HUAZHONG AGRICULTRAL UNIVERSITY
publiccc0AFDSI-SEQ-804 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: MG · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609755.1 · View at source ↗
Collection: Nigeria
Sequencing: Illumina · SPAdes 3.11.1 · 90x coverage
Released: 2019-01-12 · Submitted by: HUAZHONG AGRICULTRAL UNIVERSITY
publiccc0AFDSI-SEQ-805 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609795.1 · View at source ↗
Collection: Madagascar
Sequencing: Illumina · SPAdes 3.11.1 · 111x coverage
Released: 2019-01-12 · Submitted by: HUAZHONG AGRICULTRAL UNIVERSITY
publiccc0AFDSI-SEQ-807 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: MG · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609805.1 · View at source ↗
Collection: Madagascar
Sequencing: Illumina · SPAdes 3.11.1 · 111x coverage
Released: 2019-01-12 · Submitted by: HUAZHONG AGRICULTRAL UNIVERSITY
publiccc0AFDSI-SEQ-808 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: MG · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609935.1 · View at source ↗
Collection: Madagascar
Sequencing: Illumina · SPAdes 3.11.1 · 78x coverage
Released: 2019-01-12 · Submitted by: HUAZHONG AGRICULTRAL UNIVERSITY
publiccc0AFDSI-SEQ-809 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: MG · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609955.1 · View at source ↗
Collection: Madagascar
Sequencing: Illumina · SPAdes 3.11.1 · 86x coverage
Released: 2019-01-12 · Submitted by: HUAZHONG AGRICULTRAL UNIVERSITY
publiccc0AFDSI-SEQ-810 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: MG · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/3/2026 · Last updated: 9/3/2026
Source: NCBI PX307890.1 · View at source ↗
Collection: India
Released: 2026-07-08
publiccc0AFDSI-SEQ-1030 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: IN · PIC: unknown · MAT: unknown
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609765.1 · View at source ↗
Collection: Liberia
Sequencing: Illumina · SPAdes 3.11.1 · 178x coverage
Released: 2019-01-12 · Submitted by: HUAZHONG AGRICULTRAL UNIVERSITY
publiccc0AFDSI-SEQ-806 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: LR · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Phage depolymerase modulates virulence and biofilm in hypervirulent Klebsiella pneumoniae by CPS-mediated suppression of type 3 fimbriae (PXD080233) ↗AFDSI-PROJREF-233
LC-MSMS analysis of crocus sativus at different floral developmental stage. (PXD076029) ↗AFDSI-PROJREF-234
Proteomic Insights into Rice Protein Palmitoylation and Its Role in Cytosolic Translation (PXD073446) ↗AFDSI-PROJREF-236
H2S‑mediated protein persulfidation regulates redox metabolic flux underlying salt stress resilience in rice (PXD072089) ↗AFDSI-PROJREF-237
H2S‑mediated protein persulfidation regulates redox metabolic flux underlying salt stress resilience in rice (PXD072035) ↗AFDSI-PROJREF-238
Proteomic profiling of rice (Oryza sativa Nipponbare) roots during compatible interaction with the root-knot nematode Meloidogyne graminicola (PXD071707) ↗AFDSI-PROJREF-240
Identification of potential Rsf1 promoter-interacting proteins in rice (Oryza sativa Nipponbare) roots during nematode infection (PXD071646) ↗AFDSI-PROJREF-241
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL344364 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 1.0 cmAFDSI-METABOLOMICS-430
ChEMBL: CHEMBL334618 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.0 cmAFDSI-METABOLOMICS-431
ChEMBL: CHEMBL335304 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.7 cmAFDSI-METABOLOMICS-432
ChEMBL: CHEMBL433668 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.1 cmAFDSI-METABOLOMICS-433
ChEMBL: CHEMBL335030 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.4 cmAFDSI-METABOLOMICS-434
ChEMBL: CHEMBL132752 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.7 cmAFDSI-METABOLOMICS-435
ChEMBL: CHEMBL135386 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 1.2 cmAFDSI-METABOLOMICS-436
ChEMBL: CHEMBL135202 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.6 cmAFDSI-METABOLOMICS-437
ChEMBL: CHEMBL134985 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.7 cm
MetaboLights: Quantitative 1H NMR metabolome profiling of Thai Jasmine rice (Oryza sativa) reveals primary metabolic response during brown planthopper infestation (View at source ↗)AFDSI-METABPROF-60
MetaboLights: Seed Metabolome Analysis of a Transgenic Rice Line Expressing Cholera Toxin B-subunit (View at source ↗)AFDSI-METABPROF-205
MetaboLights: Metabolic responses of rice cultivars with different tolerance to combined heat and drought stress under field conditions (View at source ↗)AFDSI-METABPROF-61
MetaboLights: Effects of biodegradable Film Mulching on Yield, Grain Quality, and Soil Metabolic Characteristics of Water-Saving and Drought-Resistant Rice (View at source ↗)AFDSI-METABPROF-62
MetaboLights: Plant elicitor peptide signalling confers rice resistance to piercing-sucking insect herbivores and pathogens (View at source ↗)AFDSI-METABPROF-63
MetaboLights: Metabolite profiling of the fermentation process of yamahai-ginjo-shikomi Japanese sake (View at source ↗)AFDSI-METABPROF-64
MetaboLights: Metabolome-based prediction of yield heterosis contributes to the breeding of elite rice (View at source ↗)AFDSI-METABPROF-192
MetaboLights: Multitrait engineering of Hassawi red rice for sustainable cultivation (View at source ↗)AFDSI-METABPROF-182
MetaboLights: Multi-omics resources for targeted agronomic improvement of pigmented rice (View at source ↗)AFDSI-METABPROF-446
MetaboLights: Root exudate metabolomics of PpPEPC1b-overexpressing rice under phosphate deficiency (View at source ↗)
pLDDT confidence: unknown · ligands: NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Auto-synced from PDBe 3v1y · View at source ↗
publiccc_byAFDSI-STRUCT-12545-V3pLDDT confidence: unknown · ligands: NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Auto-synced from PDBe 3v1y · View at source ↗
publiccc_byAFDSI-STRUCT-12544-V3pLDDT confidence: 65.6
Auto-synced from AlphaFold DB AF-Q0IMS9-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-12169-V2pLDDT confidence: 97.0
Auto-synced from AlphaFold DB AF-P17784-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-5538-V2pLDDT confidence: 97.8
Auto-synced from AlphaFold DB AF-Q0J8A4-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-12173-V2camera_trap at Benin · Source: GBIF 4904266497 (View at source ↗)AFDSI-IMG-4958
camera_trap at Benin · Source: GBIF 4950605768 (View at source ↗)AFDSI-IMG-4960
camera_trap at Madagascar · Source: GBIF 4954438645 (View at source ↗)AFDSI-IMG-4963
camera_trap at Mozambique · Source: GBIF 6353417487 (View at source ↗)AFDSI-IMG-4947
camera_trap at Tanzania, United Republic of · Source: GBIF 6353351530 (View at source ↗)AFDSI-IMG-4949
camera_trap at Tanzania, United Republic of · Source: GBIF 6134219360 (View at source ↗)AFDSI-IMG-4950
camera_trap at Benin · Source: GBIF 6352493663 (View at source ↗)AFDSI-IMG-4952
camera_trap at Benin · Source: GBIF 4875140015 (View at source ↗)AFDSI-IMG-4954
camera_trap at Gambia · Source: GBIF 6352464873 (View at source ↗)AFDSI-IMG-4951
camera_trap at Madagascar · Source: GBIF 6147624119 (View at source ↗)AFDSI-IMG-4953
BioImage Archive: (View on source archive ↗)AFDSI-CELL-557
BioImage Archive: SeedGerm-VIG Image Series (View on source archive ↗)AFDSI-CELL-558
BioImage Archive: Spatial distribution of three ARGONAUTEs regulates the anther phasiRNA pathway (View on source archive ↗)AFDSI-CELL-556
BioImage Archive: ZEP1 orchestrates template choice and crossover pathways to ensure meiotic genome integrity in rice (View on source archive ↗)AFDSI-CELL-1265
CIL: Louisa Howard (2012) CIL:40383, Oryza sativa. CIL. Dataset (View on source archive ↗)AFDSI-CELL-7690
CIL: Louisa Howard (2012) CIL:40384, Oryza sativa. CIL. Dataset (View on source archive ↗)AFDSI-CELL-7691
CIL: Louisa Howard (2012) CIL:40385, Oryza sativa. CIL. Dataset (View on source archive ↗)AFDSI-CELL-7692
71,035 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
Genomes are often recorded at strain level. These entries belong to this species.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
PlantLAI — ltr_assembly_index
derived from genome record AFDSI-SEQ-131
File: GCA_936158435.1_plantlai_results.tar.gz
Tool version: PlantLAI web pipeline (MegaLAI.sh -A 4; LTR_retriever v2.9.0)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-21294MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-810
File: GCA_900609955.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-21002ChEMBL: CHEMBL138177 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 1.4 cmAFDSI-METABOLOMICS-439
ChEMBL: PROTOCATECHUIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ID50 0.42 uM/mlAFDSI-METABOLOMICS-440
ChEMBL: METHYL PROTOCATECHUATE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ID50 0.28 uM/mlAFDSI-METABOLOMICS-441
ChEMBL: VERATRIC ACID METHYL ESTER (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-442
ChEMBL: VERATRIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-443
ChEMBL: ISOVANILLIC ACID METHYL ESTER (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-444
ChEMBL: ISOVANILLIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-445
ChEMBL: METHYL VANILLATE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-446
ChEMBL: VANILLIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-447
ChEMBL: (3,5-DICHLOROPHENYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 33000.0 nMAFDSI-METABOLOMICS-448
ChEMBL: (4-HYDROXYPHENETHYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4470000.0 nMAFDSI-METABOLOMICS-449
ChEMBL: 3-(DIPHOSPHONOMETHYLAMINO)BENZOIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1800000.0 nMAFDSI-METABOLOMICS-450
ChEMBL: (3-NITROPHENYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 738000.0 nMAFDSI-METABOLOMICS-451
ChEMBL: 2-(DIPHOSPHONOMETHYLAMINO)NICOTINIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 334000.0 nMAFDSI-METABOLOMICS-452
ChEMBL: (P-TOLYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 170000.0 nMAFDSI-METABOLOMICS-453
ChEMBL: (CYCLOHEXYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1110000.0 nMAFDSI-METABOLOMICS-454
ChEMBL: CHEMBL2251373 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 64000.0 nMAFDSI-METABOLOMICS-455
ChEMBL: CHEMBL291736 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 243000.0 nMAFDSI-METABOLOMICS-456
ChEMBL: CHEMBL2286642 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Drug uptake 2.0 ppmAFDSI-METABOLOMICS-457
MetaboLights: Measurement of leaf 13C enrichment in rice metabolites under standard and high light conditions by 13C-labeling (View at source ↗)AFDSI-METABPROF-457
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-809
File: GCA_900609935.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-21001MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-808
File: GCA_900609805.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20997MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-807
File: GCA_900609795.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20996