Oryza sativa
Asian cultivated rice
taxon 4530Indigenous / local names
- Rys (af) Wikidata ↗
- Rys (afr) GBIF ↗
- Shinkafa (ha) Wikidata ↗
- osikapa (ig) Wikidata ↗
- Lɔ́sɔ (lin) GBIF ↗
Genome browser
Sequence records
genome (fasta)
mirroredOrigin: hub
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First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI GCA_936158435.1 · View at source ↗
Sequencing: HiSeq X · Supernova2 · 63x coverage
publiccc0AFDSI-SEQ-131GoaT: Scaffold assembly · 0.31 Gb · scaffold N50 14,575 · BUSCO 94.7% complete · View at source ↗
Publicly accessible — no request needed.
genome (fasta)
mirroredOrigin: hub
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First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609685.1 · View at source ↗
Sequencing: Illumina · SPAdes 3.11.1 · 102x coverage
publiccc0AFDSI-SEQ-804GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
genome (fasta)
mirroredOrigin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609755.1 · View at source ↗
Sequencing: Illumina · SPAdes 3.11.1 · 90x coverage
publiccc0AFDSI-SEQ-805GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
genome (fasta)
mirroredOrigin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609765.1 · View at source ↗
Sequencing: Illumina · SPAdes 3.11.1 · 178x coverage
publiccc0AFDSI-SEQ-806GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
genome (fasta)
mirroredOrigin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609795.1 · View at source ↗
Sequencing: Illumina · SPAdes 3.11.1 · 111x coverage
publiccc0AFDSI-SEQ-807GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
genome (fasta)
mirroredOrigin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609805.1 · View at source ↗
Sequencing: Illumina · SPAdes 3.11.1 · 111x coverage
publiccc0AFDSI-SEQ-808GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
genome (fasta)
mirroredOrigin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609935.1 · View at source ↗
Sequencing: Illumina · SPAdes 3.11.1 · 78x coverage
publiccc0AFDSI-SEQ-809GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
genome (fasta)
mirroredOrigin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_900609955.1 · View at source ↗
Sequencing: Illumina · SPAdes 3.11.1 · 86x coverage
publiccc0AFDSI-SEQ-810GoaT: Chromosome assembly · 0.49 Gb · scaffold N50 29,704,550 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
transcriptome (fasta)
mirroredOrigin: hub
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First synced: 9/3/2026 · Last updated: 9/3/2026
Source: NCBI PX307890.1 · View at source ↗
Released: 2026-07-08
publiccc0AFDSI-SEQ-1030Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
Proteomics (external sources)
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Phage depolymerase modulates virulence and biofilm in hypervirulent Klebsiella pneumoniae by CPS-mediated suppression of type 3 fimbriae (PXD080233) ↗AFDSI-PROJREF-233
LC-MSMS analysis of crocus sativus at different floral developmental stage. (PXD076029) ↗AFDSI-PROJREF-234
Proteomic Insights into Rice Protein Palmitoylation and Its Role in Cytosolic Translation (PXD073446) ↗AFDSI-PROJREF-236
H2S‑mediated protein persulfidation regulates redox metabolic flux underlying salt stress resilience in rice (PXD072089) ↗AFDSI-PROJREF-237
H2S‑mediated protein persulfidation regulates redox metabolic flux underlying salt stress resilience in rice (PXD072035) ↗AFDSI-PROJREF-238
Proteomic profiling of rice (Oryza sativa Nipponbare) roots during compatible interaction with the root-knot nematode Meloidogyne graminicola (PXD071707) ↗AFDSI-PROJREF-240
Identification of potential Rsf1 promoter-interacting proteins in rice (Oryza sativa Nipponbare) roots during nematode infection (PXD071646) ↗AFDSI-PROJREF-241
Chemical Profiles (external sources)
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL344364 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 1.0 cmAFDSI-METABOLOMICS-430
ChEMBL: CHEMBL334618 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.0 cmAFDSI-METABOLOMICS-431
ChEMBL: CHEMBL335304 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.7 cmAFDSI-METABOLOMICS-432
ChEMBL: CHEMBL433668 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.1 cmAFDSI-METABOLOMICS-433
ChEMBL: CHEMBL335030 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.4 cmAFDSI-METABOLOMICS-434
ChEMBL: CHEMBL132752 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.7 cmAFDSI-METABOLOMICS-435
ChEMBL: CHEMBL135386 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 1.2 cmAFDSI-METABOLOMICS-436
ChEMBL: CHEMBL135202 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.6 cmAFDSI-METABOLOMICS-437
ChEMBL: CHEMBL134985 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 2.7 cmAFDSI-METABOLOMICS-438
ChEMBL: CHEMBL138177 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Rice stem length 1.4 cmAFDSI-METABOLOMICS-439
ChEMBL: PROTOCATECHUIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ID50 0.42 uM/mlAFDSI-METABOLOMICS-440
ChEMBL: METHYL PROTOCATECHUATE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; ID50 0.28 uM/mlAFDSI-METABOLOMICS-441
ChEMBL: VERATRIC ACID METHYL ESTER (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-442
ChEMBL: VERATRIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-443
ChEMBL: ISOVANILLIC ACID METHYL ESTER (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-444
ChEMBL: ISOVANILLIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-445
ChEMBL: METHYL VANILLATE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-446
ChEMBL: VANILLIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Inhibition %AFDSI-METABOLOMICS-447
ChEMBL: (3,5-DICHLOROPHENYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 33000.0 nMAFDSI-METABOLOMICS-448
ChEMBL: (4-HYDROXYPHENETHYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 4470000.0 nMAFDSI-METABOLOMICS-449
ChEMBL: 3-(DIPHOSPHONOMETHYLAMINO)BENZOIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1800000.0 nMAFDSI-METABOLOMICS-450
ChEMBL: (3-NITROPHENYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 738000.0 nMAFDSI-METABOLOMICS-451
ChEMBL: 2-(DIPHOSPHONOMETHYLAMINO)NICOTINIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 334000.0 nMAFDSI-METABOLOMICS-452
ChEMBL: (P-TOLYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 170000.0 nMAFDSI-METABOLOMICS-453
ChEMBL: (CYCLOHEXYLAMINO)METHYLENEDIPHOSPHONIC ACID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 1110000.0 nMAFDSI-METABOLOMICS-454
ChEMBL: CHEMBL2251373 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 64000.0 nMAFDSI-METABOLOMICS-455
ChEMBL: CHEMBL291736 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; IC50 243000.0 nMAFDSI-METABOLOMICS-456
ChEMBL: CHEMBL2286642 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Drug uptake 2.0 ppmAFDSI-METABOLOMICS-457
Metabolic Profiles (external sources)
MetaboLights: Quantitative 1H NMR metabolome profiling of Thai Jasmine rice (Oryza sativa) reveals primary metabolic response during brown planthopper infestation (View at source ↗)AFDSI-METABPROF-60
MetaboLights: Metabolic responses of rice cultivars with different tolerance to combined heat and drought stress under field conditions (View at source ↗)AFDSI-METABPROF-61
MetaboLights: Effects of biodegradable Film Mulching on Yield, Grain Quality, and Soil Metabolic Characteristics of Water-Saving and Drought-Resistant Rice (View at source ↗)AFDSI-METABPROF-62
MetaboLights: Plant elicitor peptide signalling confers rice resistance to piercing-sucking insect herbivores and pathogens (View at source ↗)AFDSI-METABPROF-63
MetaboLights: Metabolite profiling of the fermentation process of yamahai-ginjo-shikomi Japanese sake (View at source ↗)AFDSI-METABPROF-64
MetaboLights: Metabolome-based prediction of yield heterosis contributes to the breeding of elite rice (View at source ↗)AFDSI-METABPROF-192
MetaboLights: Multitrait engineering of Hassawi red rice for sustainable cultivation (View at source ↗)AFDSI-METABPROF-182
MetaboLights: Root exudate metabolomics of PpPEPC1b-overexpressing rice under phosphate deficiency (View at source ↗)AFDSI-METABPROF-183
Cellular & Molecular Imaging (external sources)
BioImage Archive: (View on source archive ↗)AFDSI-CELL-557
BioImage Archive: SeedGerm-VIG Image Series (View on source archive ↗)AFDSI-CELL-558
BioImage Archive: Spatial distribution of three ARGONAUTEs regulates the anther phasiRNA pathway (View on source archive ↗)AFDSI-CELL-556
BioImage Archive: ZEP1 orchestrates template choice and crossover pathways to ensure meiotic genome integrity in rice (View on source archive ↗)AFDSI-CELL-1265
Geographic range (Africa)
46,572 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
