Loading…
Loading…
Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 65489Also known as: Oryza breviligulata
Not yet assessed
Occurrence records: Recorded mostly in Africa. 3,858 of 4,278 GBIF records (90%) are from Africa (checked 10/9/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
0 downloads
First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI GCA_051998315.1 · View at source ↗
Collection: Botswana
Sequencing: PacBio · Hifiasm v. 0.19.5-r587; Verkko v. v1.4 · 26.6x coverage
Released: 2025-08-13 · Submitted by: zhejiang university
publiccc0AFDSI-SEQ-361 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: BW · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.36 Gb · scaffold N50 29,788,870 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
protein 2428 — 733 aa
protein 2429 — 2496 aa
protein 2430 — 2508 aa
protein 2431 — 743 aa
MOCS3 — 473 aa
MOCS3 — 443 aa
protein 2434 — 492 aa
protein 2435 — 787 aa
protein 2436 — 232 aa
protein 2437 — 261 aa
Origin: hub
0 downloads
First synced: 8/26/2026 · Last updated: 8/26/2026
Source: NCBI MN607019.1 · View at source ↗
Released: 2019-11-27
publiccc0AFDSI-SEQ-640 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_002926215.1 · View at source ↗
Collection: Chad
Sequencing: Illumina HiSeq · ABySS v. 1.5.2 · 0.75x coverage
Released: 2018-02-13 · Submitted by: IRD
publiccc0AFDSI-SEQ-784 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: TD · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.36 Gb · scaffold N50 29,788,870 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 9/1/2026 · Last updated: 9/1/2026
Source: NCBI GCA_002926235.1 · View at source ↗
Collection: Mali
Sequencing: Illumina HiSeq · ABySS v. 1.5.2 · 0.75x coverage
Released: 2018-02-13 · Submitted by: IRD
publiccc0AFDSI-SEQ-785 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ML · PIC: unknown · MAT: unknown
GoaT: Chromosome assembly · 0.36 Gb · scaffold N50 29,788,870 · 12 chromosomes · View at source ↗
Publicly accessible — no request needed.
AlphaFold DB proteome: UP000026960 ↗
PaxDb — real per-protein abundance
A0A0D3GVI1 (65489.A0A0D3GVI1) — abundance 33668AFDSI-PROTEOMICS-401
A0A0D3HQA8 (65489.A0A0D3HQA8) — abundance 31421AFDSI-PROTEOMICS-402
A0A0D3ERP4 (65489.A0A0D3ERP4) — abundance 25516AFDSI-PROTEOMICS-403
A0A0D3EP96 (65489.A0A0D3EP96) — abundance 23338AFDSI-PROTEOMICS-404
A0A0D3HTH6 (65489.A0A0D3HTH6) — abundance 23113AFDSI-PROTEOMICS-405
A0A0D3HTH8 (65489.A0A0D3HTH8) — abundance 23100AFDSI-PROTEOMICS-406
A0A0D3HT79 (65489.A0A0D3HT79) — abundance 23100AFDSI-PROTEOMICS-407
A0A0D3HMK0 (65489.A0A0D3HMK0) — abundance 20845AFDSI-PROTEOMICS-408
A0A0D3H383 (65489.A0A0D3H383) — abundance 18154AFDSI-PROTEOMICS-409
A0A0D3GS39 (65489.A0A0D3GS39) — abundance 18100AFDSI-PROTEOMICS-410
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Energetics- and transport-related protein abundance responds differentially to salt in Oryza australiensis roots (PXD013701) ↗AFDSI-PROJREF-229
Oryza sativa cv. Nipponbare and Oryza barthii as unexpected tolerance and susceptibility sources against Schizotetranychus oryzae (Acari: Tetranychidae) mite infestation (PXD020940) ↗AFDSI-PROJREF-228
pLDDT confidence: 92.9
Auto-synced from AlphaFold DB AF-A0A0D3GKA8-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-12157-V2pLDDT confidence: 80.7
Auto-synced from AlphaFold DB AF-A0A0D3EKW8-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-13583-V2pLDDT confidence: 91.2
Auto-synced from AlphaFold DB AF-A0A0D3G2Y0-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-12155-V2pLDDT confidence: 90.9
Auto-synced from AlphaFold DB AF-A0A0D3GUY4-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-13601-V2pLDDT confidence: 65.3
Auto-synced from AlphaFold DB AF-A0A0D3GSK7-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-13591-V2herbarium at Tanzania · Source: iDigBio 1fa5340e-fd2c-4294-a3f0-32154fe988d1 (View at source ↗)AFDSI-IMG-4944
herbarium at Senegal · Source: iDigBio 5d17ff29-b033-4107-833c-d001c65b97a1 (View at source ↗)AFDSI-IMG-4945
herbarium at Senegal · Source: iDigBio 69337630-f5b9-447a-ac5d-71181f9d3b19 (View at source ↗)AFDSI-IMG-4946
camera_trap at Tanzania, United Republic of · Source: GBIF 6134219489 (View at source ↗)AFDSI-IMG-4932
camera_trap at Nigeria · Source: GBIF 5110436588 (View at source ↗)AFDSI-IMG-4933
camera_trap at Senegal · Source: GBIF 6134220668 (View at source ↗)AFDSI-IMG-4934
herbarium at Benin · Source: GBIF 5838924406 (View at source ↗)AFDSI-IMG-4937
herbarium at Benin · Source: GBIF 4997729210 (View at source ↗)AFDSI-IMG-4938
camera_trap at Mali · Source: GBIF 2596229558 (View at source ↗)AFDSI-IMG-6448
BioImage Archive: Spatial distribution of three ARGONAUTEs regulates the anther phasiRNA pathway (View on source archive ↗)AFDSI-CELL-550
BioImage Archive: (View on source archive ↗)AFDSI-CELL-551
BioImage Archive: SeedGerm-VIG Image Series (View on source archive ↗)AFDSI-CELL-552
BioImage Archive: ZEP1 orchestrates template choice and crossover pathways to ensure meiotic genome integrity in rice (View on source archive ↗)AFDSI-CELL-1262
4,123 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
PlantLAI — ltr_assembly_index
derived from genome record AFDSI-SEQ-361
File: GCA_051998315.1_plantlai_results.tar.gz
Tool version: PlantLAI web pipeline (MegaLAI.sh -A 4; LTR_retriever v2.9.0)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-21280MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-361
File: GCA_051998315.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20949MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-785
File: GCA_002926235.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20938MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-784
File: GCA_002926215.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P web pipeline)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20937