Oryza barthii

taxon 65489

Also known as: Oryza breviligulata

Indigenous / local names

Lallaki (ha) Wikidata ↗
Lallaki (hau) GBIF ↗

Genome browser

Sequence records

genome (fasta)

mirrored

Origin: hub

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First synced: 8/26/2026 · Last updated: 8/26/2026

Source: NCBI GCA_051998315.1 · View at source ↗

publiccc0AFDSI-SEQ-361

GoaT: Chromosome assembly · 0.36 Gb · scaffold N50 29,788,870 · 12 chromosomes · View at source ↗

Publicly accessible — no request needed.

transcriptome (fasta)

mirrored

Origin: hub

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First synced: 8/26/2026 · Last updated: 8/26/2026

Source: NCBI MN607019.1 · View at source ↗

publiccc0AFDSI-SEQ-640

Publicly accessible — no request needed.

genome (fasta)

mirrored

Origin: hub

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First synced: 9/1/2026 · Last updated: 9/1/2026

Source: NCBI GCA_002926215.1 · View at source ↗

Sequencing: Illumina HiSeq · ABySS v. 1.5.2 · 0.75x coverage

publiccc0AFDSI-SEQ-784

GoaT: Chromosome assembly · 0.36 Gb · scaffold N50 29,788,870 · 12 chromosomes · View at source ↗

Publicly accessible — no request needed.

genome (fasta)

mirrored

Origin: hub

0 downloads

First synced: 9/1/2026 · Last updated: 9/1/2026

Source: NCBI GCA_002926235.1 · View at source ↗

Sequencing: Illumina HiSeq · ABySS v. 1.5.2 · 0.75x coverage

publiccc0AFDSI-SEQ-785

GoaT: Chromosome assembly · 0.36 Gb · scaffold N50 29,788,870 · 12 chromosomes · View at source ↗

Publicly accessible — no request needed.

AlphaFold DB proteome: UP000026960 ↗

Proteomics (external sources)

PaxDb — real per-protein abundance

A0A0D3GVI1 (65489.A0A0D3GVI1) — abundance 33668AFDSI-PROTEOMICS-401

A0A0D3HQA8 (65489.A0A0D3HQA8) — abundance 31421AFDSI-PROTEOMICS-402

A0A0D3ERP4 (65489.A0A0D3ERP4) — abundance 25516AFDSI-PROTEOMICS-403

A0A0D3EP96 (65489.A0A0D3EP96) — abundance 23338AFDSI-PROTEOMICS-404

A0A0D3HTH6 (65489.A0A0D3HTH6) — abundance 23113AFDSI-PROTEOMICS-405

A0A0D3HTH8 (65489.A0A0D3HTH8) — abundance 23100AFDSI-PROTEOMICS-406

A0A0D3HT79 (65489.A0A0D3HT79) — abundance 23100AFDSI-PROTEOMICS-407

A0A0D3HMK0 (65489.A0A0D3HMK0) — abundance 20845AFDSI-PROTEOMICS-408

A0A0D3H383 (65489.A0A0D3H383) — abundance 18154AFDSI-PROTEOMICS-409

A0A0D3GS39 (65489.A0A0D3GS39) — abundance 18100AFDSI-PROTEOMICS-410

PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)

Oryza sativa cv. Nipponbare and Oryza barthii as unexpected tolerance and susceptibility sources against Schizotetranychus oryzae (Acari: Tetranychidae) mite infestation (PXD020940) ↗AFDSI-PROJREF-228

Energetics- and transport-related protein abundance responds differentially to salt in Oryza australiensis roots (PXD013701) ↗AFDSI-PROJREF-229

Cellular & Molecular Imaging (external sources)

BioImage Archive: Spatial distribution of three ARGONAUTEs regulates the anther phasiRNA pathway (View on source archive ↗)AFDSI-CELL-550

BioImage Archive: (View on source archive ↗)AFDSI-CELL-551

BioImage Archive: SeedGerm-VIG Image Series (View on source archive ↗)AFDSI-CELL-552

BioImage Archive: ZEP1 orchestrates template choice and crossover pathways to ensure meiotic genome integrity in rice (View on source archive ↗)AFDSI-CELL-1262

Geographic range (Africa)

3,847 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.

This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.