Loading…
Loading…
Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 614Also known as: Aerobacter liquefaciens
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 12 of 385 GBIF records (3%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
68 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_040151255.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina · SPAdes v. 3.15.3 · 394.811x coverage
Released: 2024-06-12 · Submitted by: North-West University
publiccc0AFDSI-SEQ-6079 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
cobA — 476 aa
cobA — 467 aa
tesB — 287 aa
fadB — 729 aa
tesA — 212 aa
pyrG — 545 aa
arnA — 660 aa
thiI — 482 aa
putA — 1323 aa
glmU — 456 aa
Origin: hub
68 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_040151335.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina · SPAdes v. 3.15.3 · 360.168x coverage
Released: 2024-06-12 · Submitted by: North-West University
publiccc0AFDSI-SEQ-6081 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
63 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_040151455.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina · SPAdes v. 3.15.3 · 315.014x coverage
Released: 2024-06-12 · Submitted by: North-West University
publiccc0AFDSI-SEQ-6438 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 11/8/2026 · Last updated: 11/8/2026
Source: NCBI M23640.1 · View at source ↗
Released: 1992-03-30
publiccc0AFDSI-SEQ-6561 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
AlphaFold DB proteome: UP000595237 ↗
PaxDb — real per-protein abundance
ompA (614.XJ20_15015) — abundance 29519AFDSI-PROTEOMICS-1551
AKE12444.1 (614.XJ20_22100) — abundance 27018AFDSI-PROTEOMICS-1552
ompC-3 (614.XJ20_15130) — abundance 11422AFDSI-PROTEOMICS-1553
mdh (614.XJ20_21570) — abundance 10852AFDSI-PROTEOMICS-1554
lysM (614.XJ20_09320) — abundance 10576AFDSI-PROTEOMICS-1555
dps (614.XJ20_16310) — abundance 9665AFDSI-PROTEOMICS-1556
oppA (614.XJ20_10025) — abundance 9515AFDSI-PROTEOMICS-1557
AKE11657.1 (614.XJ20_17845) — abundance 9451AFDSI-PROTEOMICS-1558
AKE08421.1 (614.XJ20_00300) — abundance 9268AFDSI-PROTEOMICS-1559
uspA (614.XJ20_24725) — abundance 9177AFDSI-PROTEOMICS-1560
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL8185 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 2.0 ug.mL-1AFDSI-METABOLOMICS-2595
ChEMBL: CYCLOSERINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-2591
ChEMBL: CHEMBL1795040 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 4.0 ug.mL-1AFDSI-METABOLOMICS-2593
ChEMBL: CYCLOSERINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-2590
ChEMBL: CHEMBL1795040 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 4.0 ug.mL-1AFDSI-METABOLOMICS-2592
ChEMBL: CHEMBL8185 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 2.0 ug.mL-1AFDSI-METABOLOMICS-2594
ChEMBL: CHEMBL267077 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 2.0 ug.mL-1AFDSI-METABOLOMICS-2596
ChEMBL: CHEMBL112906 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 500.0 ug.mL-1AFDSI-METABOLOMICS-2598
ChEMBL: CHEMBL111385 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 500.0 ug.mL-1
KEGG: KEGG genome-based metabolic profile (slq) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-412
pLDDT confidence: 95.9
Auto-synced from AlphaFold DB AF-A0A515D1M8-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18396-V2pLDDT confidence: 93.8
Auto-synced from AlphaFold DB AF-A0A380A6E2-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18382-V2pLDDT confidence: 93.4
Auto-synced from AlphaFold DB AF-A0A515D4W8-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18384-V2pLDDT confidence: 96.6
Auto-synced from AlphaFold DB AF-A0A515D2F1-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18386-V2pLDDT confidence: 96.5
Auto-synced from AlphaFold DB AF-A0A379ZZ58-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18388-V2BioImage Archive: An Rhs effector uses distinct target cell functions to intoxicate bacterial and fungal competitors (View on source archive ↗)AFDSI-CELL-7534
BioImage Archive: Holotomographic datasets in OME-Zarr format for compression benchmarking of holotomographic data (View on source archive ↗)AFDSI-CELL-7535
11 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6438
File: GCF_040151455.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20008MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6081
File: GCF_040151335.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20006There are more related species. Open the species tree to see them all.
ChEMBL: CHEMBL109490 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 500.0 ug.mL-1AFDSI-METABOLOMICS-2602
ChEMBL: CHEMBL439783 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 500.0 ug.mL-1AFDSI-METABOLOMICS-2604
ChEMBL: PLAZOMICIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.0 ug.mL-1AFDSI-METABOLOMICS-2606
ChEMBL: AMIKACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 4.0 ug.mL-1AFDSI-METABOLOMICS-2608
ChEMBL: CHEMBL267077 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 2.0 ug.mL-1AFDSI-METABOLOMICS-2597
ChEMBL: CHEMBL112906 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 500.0 ug.mL-1AFDSI-METABOLOMICS-2599
ChEMBL: CHEMBL111385 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 500.0 ug.mL-1AFDSI-METABOLOMICS-2601
ChEMBL: CHEMBL109490 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 500.0 ug.mL-1AFDSI-METABOLOMICS-2603
ChEMBL: CHEMBL439783 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 500.0 ug.mL-1AFDSI-METABOLOMICS-2605
ChEMBL: PLAZOMICIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.0 ug.mL-1AFDSI-METABOLOMICS-2607
ChEMBL: AMIKACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 4.0 ug.mL-1AFDSI-METABOLOMICS-2609
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6079
File: GCF_040151255.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20005