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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 587Also known as: Bacterium rettgeri, Proteus rettgeri, Shigella rettgeri
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded in Africa and elsewhere. 85 of 637 GBIF records (13%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
50 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_046543805.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: Oxford Nanopore GridION · unicycler v. 0.4.9 · 50x coverage
Released: 2025-01-07 · Submitted by: University of Oxford
publiccc0AFDSI-SEQ-6369 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
tesA — 201 aa
tesB — 289 aa
nudC — 263 aa
hmp_2 — 399 aa
hldE — 475 aa
murE — 495 aa
thrA — 819 aa
metL — 813 aa
murQ_2 — 303 aa
pyrG — 545 aa
Origin: hub
49 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_017571155.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Pretoria
Sequencing: Oxford Nanopore MinION · Celera Assembler Canu v. 2.1 · 10x coverage
Released: 2021-03-23 · Submitted by: Univeristy of Pretoria and National Health Laboratory Services
publiccc0AFDSI-SEQ-6370 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
0 downloads
First synced: 11/8/2026 · Last updated: 11/8/2026
Source: NCBI JC186683.1 · View at source ↗
Released: 2014-02-02
publiccc0AFDSI-SEQ-6550 Country of origin not recorded: see how benefit-sharing works →Publicly accessible — no request needed.
AlphaFold DB proteome: UP000834611 ↗
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
High-Intensity Comparative and Quantitative Proteomics of Histamine-Forming and Other Biogenic Amine-Producing Bacteria Present in Seafood (PXD043997) ↗AFDSI-PROJREF-792
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL268887 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.6 ug.mL-1AFDSI-METABOLOMICS-2254
ChEMBL: FLEROXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.4 ug.mL-1AFDSI-METABOLOMICS-2255
ChEMBL: CHEMBL6287 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.6 ug.mL-1AFDSI-METABOLOMICS-2256
ChEMBL: CYCLOSERINE (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 128.0 ug.mL-1AFDSI-METABOLOMICS-2257
ChEMBL: CHEMBL6299 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 12.5 ug.mL-1AFDSI-METABOLOMICS-2258
ChEMBL: CHEMBL6299 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 12.5 ug.mL-1AFDSI-METABOLOMICS-2252
ChEMBL: CHEMBL6282 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 6.3 ug.mL-1AFDSI-METABOLOMICS-2253
ChEMBL: CHEMBL6265 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 12.5 ug.mL-1AFDSI-METABOLOMICS-2259
ChEMBL: CHEMBL267628 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 100.0 ug.mL-1
MetaboLights: Mapping human microbiome drug metabolism by gut bacteria and their genes (View at source ↗)AFDSI-METABPROF-281
MetaboLights: Analysis of 3274 bacterial isolates by rapid evaporative ionisation mass spectrometry (REIMS) (View at source ↗)AFDSI-METABPROF-282
KEGG: KEGG genome-based metabolic profile (prg) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-389
pLDDT confidence: 96.9
Auto-synced from AlphaFold DB AF-A0A264VRF3-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-17508-V2pLDDT confidence: 92.4
Auto-synced from AlphaFold DB AF-A0A9N8GYI3-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-17412-V2pLDDT confidence: 95.0
Auto-synced from AlphaFold DB AF-A0A264VQK5-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-17414-V2pLDDT confidence: 93.8
Auto-synced from AlphaFold DB AF-A0A264VMR9-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-17416-V2pLDDT confidence: 92.8
Auto-synced from AlphaFold DB AF-A0A264VST6-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-17418-V2No African occurrence records found for this species in GBIF — please confirm this is within this platform's African-origin/endemic/indigenous scope. This is a non-blocking, informational check only: GBIF coverage is real but imperfect, so a genuinely African species can still show no records here.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6369
File: GCA_046543805.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-17473MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6370
File: GCA_017571155.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-16302There are more related species. Open the species tree to see them all.
ChEMBL: DIFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.6 ug.mL-1AFDSI-METABOLOMICS-2264
ChEMBL: CHEMBL263075 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 6.3 ug.mL-1AFDSI-METABOLOMICS-2266
ChEMBL: CHEMBL6265 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 12.5 ug.mL-1AFDSI-METABOLOMICS-2260
ChEMBL: CHEMBL267628 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 100.0 ug.mL-1AFDSI-METABOLOMICS-2261
ChEMBL: DIFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.6 ug.mL-1AFDSI-METABOLOMICS-2263
ChEMBL: CHEMBL263075 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 6.3 ug.mL-1AFDSI-METABOLOMICS-2265