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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
A strain of Salmonella enterica. Facts recorded for the species, such as pathogen–reservoir associations, are shown here too.
taxon 595Also known as: Salmonella infantis
No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 5,480 of 224,002 GBIF records (2%) are from Africa (checked 10/11/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
33 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_054219165.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina NextSeq · Jekesa v. 1.0 · 80x coverage
Released: 2025-12-29 · Submitted by: University of Pretoria
publiccc0AFDSI-SEQ-2380 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
34 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_054219145.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina NextSeq · Jekesa v. 1.0 · 80x coverage
Released: 2025-12-29 · Submitted by: University of Pretoria
publiccc0AFDSI-SEQ-2381 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
36 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_054219215.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina NextSeq · Jekesa v. 1.0 · 80x coverage
Released: 2025-12-29 · Submitted by: University of Pretoria
publiccc0AFDSI-SEQ-2384 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
48 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019931995.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 64x coverage
Released: 2021-09-13 · Submitted by: FDA
publiccc0AFDSI-SEQ-3343 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
46 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_004744915.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Cameroon: Yaounde
Sequencing: Illumina · SPAdes v. 3.11.1 · 7.9548x coverage
Released: 2019-04-08 · Submitted by: International Livestock Research Institute
publiccc0AFDSI-SEQ-3644 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: CM · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
46 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_004744955.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Cameroon: Yaounde
Sequencing: Illumina · SPAdes v. 3.11.1 · 3.90854x coverage
Released: 2019-04-08 · Submitted by: International Livestock Research Institute
publiccc0AFDSI-SEQ-3645 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: CM · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
56 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_006293955.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 187x coverage
Released: 2019-06-12 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-4918 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
55 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCA_007763695.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Ethiopia
Sequencing: ILLUMINA · SKESA v. 2.2 · 60x coverage
Released: 2019-07-31 · Submitted by: US Food and Drug Administration
publiccc0AFDSI-SEQ-4924 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ET · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
34 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCF_054219195.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa
Sequencing: Illumina NextSeq · Jekesa v. 1.0 · 80x coverage
Released: 2025-12-29 · Submitted by: University of Pretoria
publiccc0AFDSI-SEQ-2382 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
48 downloads
First synced: 10/11/2026 · Last updated: 10/11/2026
Source: NCBI GCA_019931975.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria
Sequencing: ILLUMINA · SKESA v. 2.2 · 54x coverage
Released: 2021-09-13 · Submitted by: FDA
publiccc0AFDSI-SEQ-3342 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
No AlphaFold DB proteome found for this species.
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Universal antimicrobial resistance detection from clinical bacterial isolates using proteomics (PXD022425) ↗AFDSI-PROJREF-885
BioImage Archive: (View on source archive ↗)AFDSI-CELL-6403
BioImage Archive: Programmed Cell Death Pathways Coordinate Neutrophil and Macrophage Clearance in Zebrafish and Are Differentially Exploited by Salmonella Typhimurium (View on source archive ↗)AFDSI-CELL-6404
BioImage Archive: Reference raw BioImaging dataset to assess the phenotypic trait diversity of bryophytes within the family Scapaniaceae (View on source archive ↗)AFDSI-CELL-6405
BioImage Archive: Serial-two photon tomography of Salmonella-infected mouse spleen (View on source archive ↗)AFDSI-CELL-6406
BioImage Archive: In support of: Immunocompetent Cell Targeting by Food-Additive Titanium Dioxide (View on source archive ↗)AFDSI-CELL-6407
BioImage Archive: Estimating phenotypic traits with morphometry from 16 specimens of thallose liverworts of biological soil crusts collected in Southern Sweden and Germany (View on source archive ↗)AFDSI-CELL-6408
BioImage Archive: An Rhs effector uses distinct target cell functions to intoxicate bacterial and fungal competitors (View on source archive ↗)AFDSI-CELL-6409
BioImage Archive: A bench-top Dark-Root device built with LEGO® bricks enables a non-invasive plant root development analysis in soil conditions mirroring nature (View on source archive ↗)AFDSI-CELL-6410
BioImage Archive: The European Reference Genome Atlas - COPO submission (View on source archive ↗)AFDSI-CELL-6411
BioImage Archive: Label free imaging reveals that cellular physiology is encoded in bacterial community architecture (View on source archive ↗)AFDSI-CELL-6412
2,196 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A real, citation-backed link between this species and a documented pathogen or wildlife reservoir host — see the Pathogen-Reservoir page (under One Health) for the full pilot list.
Known reservoir host: Agama agama Endemic to Africa
Recorded for the species Salmonella enterica.
Landmark study establishing Agama agama as a natural intestinal host reservoir for Salmonella enterica
Evidence: COLLARD P, MONTEFIORE D. The agama lizard as reservoir of Salmonellae in Nigeria. Nature (1957). https://doi.org/10.1038/179164b0. PMID: 13400133. AFDSI-ASSOC-13
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Sus scrofa Native to Africa
Recorded for the species Salmonella enterica.
Recovered Salmonella enterica from ileocecal lymph nodes (26.0%), carcass surface swabs (16.0%), and pork meat (14.0%) of 100 slaughtered pigs
Evidence: Gomes-Neves E, Antunes P, Tavares A, Themudo P, Cardoso MF, Gärtner F, Costa JM, Peixe L. Salmonella cross-contamination in swine abattoirs in Portugal: Carcasses, meat and meat handlers. Int J Food Microbiol (2012). https://doi.org/10.1016/j.ijfoodmicro.2012.04.015. PMID: 22607810. AFDSI-ASSOC-12
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2384
File: GCF_054219215.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20519MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2382
File: GCF_054219195.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20518There are more related species. Open the species tree to see them all.
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Gallus gallus domesticus Linnaeus Introduced
Recorded for the species Salmonella enterica.
Isolated 34 Salmonella enterica strains across 8 serotypes from cloacal swabs and farm environments of free-range village chickens (Gallus gallus)
Evidence: Mohammed Jajere S, Hassan L, Zakaria Z, Abu J, Abdul Aziz S. Antibiogram Profiles and Risk Factors for Multidrug Resistance of Salmonella enterica Recovered from Village Chickens (Gallus gallus domesticus Linnaeus) and Other Environmental Sources in the Central and Southern Peninsular Malaysia. Antibiotics (Basel) (2020). https://doi.org/10.3390/antibiotics9100701. PMID: 33076451. AFDSI-ASSOC-11
Curated by Ms. Sarah C. Ihenko (University of Cambridge, United Kingdom) · ORCID 0009-0009-8896-7809 . Reviewed by the African DSI DataBank.
Known reservoir host: Bos taurus Introduced
Recorded for the species Salmonella enterica.
The three most common serotypes were Salmonella enterica subspecies enterica serotype Heidelberg (n = 200), Salmonella enterica subspecies enterica serotype Enteritidis (n = 170) and Salmonella enterica subspecies enterica serotype Typhimurium (n = 146).
Evidence: Gelaw AK, Nthaba P, Matle I. Detection of Salmonella from animal sources in South Africa between 2007 and 2014. J S Afr Vet Assoc (2018). https://doi.org/10.4102/jsava.v89i0.1643. PMID: 30456978. AFDSI-ASSOC-5
Curated by Dr. Ichrak Hayah (Mohammed V University in Rabat, Morocco) · ORCID 0000-0002-0783-9672. Reviewed by the African DSI DataBank.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2380
File: GCF_054219165.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20517MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-2381
File: GCF_054219145.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20516MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-3645
File: GCF_004744955.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-18622