Loading…
Loading…
Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 1295No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded in Africa and elsewhere. 4 of 35 GBIF records (11%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
73 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_025558325.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Kenya:Marsabit
Sequencing: PacBio Sequel · Flye v. 2.6 · 347x coverage
Released: 2022-10-04 · Submitted by: University of Bern
publiccc0AFDSI-SEQ-5811 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: KE · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
73 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_025558365.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Kenya:Marsabit
Sequencing: PacBio Sequel · Flye v. 2.6 · 352x coverage
Released: 2022-10-04 · Submitted by: University of Bern
publiccc0AFDSI-SEQ-5812 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: KE · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
75 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_025558345.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Kenya:Marsabit
Sequencing: PacBio Sequel · Flye v. 2.6 · 484x coverage
Released: 2022-10-04 · Submitted by: University of Bern
publiccc0AFDSI-SEQ-5813 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: KE · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
73 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_025558305.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Kenya:Marsabit
Sequencing: PacBio Sequel · Flye v. 2.6 · 274x coverage
Released: 2022-10-04 · Submitted by: University of Bern
publiccc0AFDSI-SEQ-5810 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: KE · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
pfkA — 322 aa
pdxT — 194 aa
glmU — 451 aa
coaBC — 402 aa
carB — 1057 aa
rlmN — 364 aa
pyrG — 537 aa
ribBA — 393 aa
ilvD — 562 aa
nadK — 269 aa
AlphaFold DB proteome: UP000572988 ↗
PaxDb — real per-protein abundance
hu (1295.RN70_06550) — abundance 122051AFDSI-PROTEOMICS-1951
rpmJ (1295.RN70_03355) — abundance 71076AFDSI-PROTEOMICS-1952
cspA (1295.RN70_06850) — abundance 67655AFDSI-PROTEOMICS-1953
AKS73445.1 (1295.RN70_05830) — abundance 49712AFDSI-PROTEOMICS-1954
rpmC (1295.RN70_03280) — abundance 41356AFDSI-PROTEOMICS-1955
metN-2 (1295.RN70_12095) — abundance 36435AFDSI-PROTEOMICS-1956
rpmD (1295.RN70_03330) — abundance 26591AFDSI-PROTEOMICS-1957
rpsU (1295.RN70_06055) — abundance 23385AFDSI-PROTEOMICS-1958
acpP (1295.RN70_08155) — abundance 21044AFDSI-PROTEOMICS-1959
AKS73061.1 (1295.RN70_03535) — abundance 19055AFDSI-PROTEOMICS-1960
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Dual-targeting 5-nitroimidazole ethers eradicate H. pylori by induction of stress and disabling its adaptive response (PXD067473) ↗AFDSI-PROJREF-945
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL3893408 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-2858
pLDDT confidence: 93.5
Auto-synced from AlphaFold DB AF-A0A0K0ZVA7-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18956-V2pLDDT confidence: 91.9
Auto-synced from AlphaFold DB AF-A0A7Z7VY71-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20801-V2pLDDT confidence: 89.6
Auto-synced from AlphaFold DB AF-A0A7Z7QQ54-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20803-V2pLDDT confidence: 91.8
Auto-synced from AlphaFold DB AF-A0A7Z7VXH0-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20805-V2pLDDT confidence: 91.9
Auto-synced from AlphaFold DB AF-A0A7Z7QQ78-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20807-V2BioImage Archive: Transmission electron microscopy of mast cell degranulation induced by Staphylococcus aureus delta-toxin (View on source archive ↗)AFDSI-CELL-7814
BioImage Archive: Image dataset: Testing the mechanical trigger model for Staphylococcus aureus cell-division control with population-level cell-cycle phase data (View on source archive ↗)AFDSI-CELL-7815
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || Timelapse microfluidics bacteria (View on source archive ↗)AFDSI-CELL-7816
BioImage Archive: BAIwatch: Quantitative assessment of biomaterial-associated infection assays by automated image analysis (View on source archive ↗)AFDSI-CELL-7817
BioImage Archive: Systematic identification of bacterial factors driving Staphylococcus aureus intracellular lifestyle in non-professional phagocytes (View on source archive ↗)AFDSI-CELL-7818
BioImage Archive: Simple imaging system for label-free identification of bacterial pathogens in resource-limited settings (View on source archive ↗)AFDSI-CELL-7819
BioImage Archive: Simple optical nanomotion method for single-bacterium viability and antibiotic response testing (View on source archive ↗)AFDSI-CELL-7820
BioImage Archive: Holotomographic datasets in OME-Zarr format for compression benchmarking of holotomographic data (View on source archive ↗)AFDSI-CELL-7821
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || congenic agr strains example image dataset (View on source archive ↗)AFDSI-CELL-7588
BioImage Archive: Spatial-Spectral Single-Molecule Microscopy Dataset (View on source archive ↗)AFDSI-CELL-7589
4 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5812
File: GCF_025558365.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19513MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5813
File: GCF_025558345.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19512There are more related species. Open the species tree to see them all.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5811
File: GCF_025558325.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19511MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5810
File: GCF_025558305.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19510