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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 29379No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 3 of 59 GBIF records (5%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
73 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_028464905.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria: Lagos
Sequencing: Illumina NextSeq · GS De Novo Assembler v. 0.10 · 49.1x coverage
Released: 2023-02-05 · Submitted by: University of Lagos
publiccc0AFDSI-SEQ-6458 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
atpD — 470 aa
ftsZ — 390 aa
upp — 209 aa
clpP — 194 aa
qoxB — 662 aa
protein 16233 — 424 aa
protein 16234 — 1670 aa
protein 16235 — 194 aa
birA — 324 aa
fumC — 461 aa
Origin: hub
72 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_030418005.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Nigeria: Lagos
Sequencing: Illumina NextSeq · Velvet v. 1.2.10 · 66x coverage
Released: 2023-07-10 · Submitted by: North West University
publiccc0AFDSI-SEQ-6459 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: NG · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
AlphaFold DB proteome: UP000242694 ↗
PaxDb — real per-protein abundance
rpmJ (29379.GCA_001500315_00417) — abundance 52682AFDSI-PROTEOMICS-1651
hu (29379.GCA_001500315_01498) — abundance 43241AFDSI-PROTEOMICS-1652
CD158_03360 (29379.GCA_001500315_01240) — abundance 34057AFDSI-PROTEOMICS-1653
BU607_11065 (29379.GCA_001500315_02019) — abundance 32066AFDSI-PROTEOMICS-1654
BU607_07760 (29379.GCA_001500315_01569) — abundance 26473AFDSI-PROTEOMICS-1655
CD158_03365 (29379.GCA_001500315_01241) — abundance 23827AFDSI-PROTEOMICS-1656
ftnA (29379.GCA_001500315_00643) — abundance 20737AFDSI-PROTEOMICS-1657
rpsU (29379.GCA_001500315_02065) — abundance 16334AFDSI-PROTEOMICS-1658
yflT (29379.GCA_001500315_00023) — abundance 15250AFDSI-PROTEOMICS-1659
rplL (29379.GCA_001500315_00164) — abundance 15199AFDSI-PROTEOMICS-1660
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: TELITHROMYCIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 29.0 %AFDSI-METABOLOMICS-2700
ChEMBL: ERYTHROMYCIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 18.0 %AFDSI-METABOLOMICS-2701
ChEMBL: GENTAMICIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 29.0 %AFDSI-METABOLOMICS-2702
ChEMBL: LINEZOLID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 100.0 %AFDSI-METABOLOMICS-2703
ChEMBL: CIPROFLOXACIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 35.0 %AFDSI-METABOLOMICS-2704
ChEMBL: CHEMBL4744444 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 100.0 %AFDSI-METABOLOMICS-2705
ChEMBL: CHEMBL4744444 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 100.0 %AFDSI-METABOLOMICS-2706
ChEMBL: CHEMBL2367892 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 88.0 %AFDSI-METABOLOMICS-2707
ChEMBL: VANCOMYCIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 100.0 %
KEGG: KEGG genome-based metabolic profile (saul) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-422
pLDDT confidence: 92.8
Auto-synced from AlphaFold DB AF-A0AAP8PMS9-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18735-V2pLDDT confidence: 94.1
Auto-synced from AlphaFold DB AF-A0AAW7MAA1-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20471-V2pLDDT confidence: 95.4
Auto-synced from AlphaFold DB AF-A0AAP8PNG0-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18737-V2pLDDT confidence: 94.7
Auto-synced from AlphaFold DB AF-A0AAP8PPT9-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18731-V2pLDDT confidence: 97.1
Auto-synced from AlphaFold DB AF-A0AAP8PNY3-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-18739-V2BioImage Archive: Transmission electron microscopy of mast cell degranulation induced by Staphylococcus aureus delta-toxin (View on source archive ↗)AFDSI-CELL-7890
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || congenic agr strains example image dataset (View on source archive ↗)AFDSI-CELL-7891
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || Timelapse microfluidics bacteria (View on source archive ↗)AFDSI-CELL-7892
BioImage Archive: Image dataset: Testing the mechanical trigger model for Staphylococcus aureus cell-division control with population-level cell-cycle phase data (View on source archive ↗)AFDSI-CELL-7274
BioImage Archive: BAIwatch: Quantitative assessment of biomaterial-associated infection assays by automated image analysis (View on source archive ↗)AFDSI-CELL-7275
BioImage Archive: Systematic identification of bacterial factors driving Staphylococcus aureus intracellular lifestyle in non-professional phagocytes (View on source archive ↗)AFDSI-CELL-7276
BioImage Archive: Simple imaging system for label-free identification of bacterial pathogens in resource-limited settings (View on source archive ↗)AFDSI-CELL-7277
BioImage Archive: Simple optical nanomotion method for single-bacterium viability and antibiotic response testing (View on source archive ↗)AFDSI-CELL-7278
BioImage Archive: Holotomographic datasets in OME-Zarr format for compression benchmarking of holotomographic data (View on source archive ↗)AFDSI-CELL-7279
BioImage Archive: Spatial-Spectral Single-Molecule Microscopy Dataset (View on source archive ↗)AFDSI-CELL-7280
3 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6459
File: GCF_030418005.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19716MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6458
File: GCF_028464905.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19654There are more related species. Open the species tree to see them all.
ChEMBL: CHEMBL2367892 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 88.0 %AFDSI-METABOLOMICS-2708
ChEMBL: VANCOMYCIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; Activity 100.0 %AFDSI-METABOLOMICS-2710