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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 45972No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 15 of 393 GBIF records (4%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
70 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_025558385.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Somalia:Somaliland
Sequencing: PacBio Sequel · Flye v. 2.6 · 346x coverage
Released: 2022-10-04 · Submitted by: University of Bern
publiccc0AFDSI-SEQ-6469 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: SO · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
rlmN — 364 aa
pdxT — 185 aa
gatB — 475 aa
pyrG — 535 aa
argJ — 313 aa
carB — 1057 aa
ribBA — 393 aa
coaBC — 399 aa
pfkA — 322 aa
glmU — 454 aa
AlphaFold DB proteome: UP000182665 ↗
PaxDb — real per-protein abundance
UF70_1049 (45972.UF70_1049) — abundance 90499AFDSI-PROTEOMICS-1851
rpmJ (45972.UF70_1958) — abundance 33416AFDSI-PROTEOMICS-1852
rpmG-2 (45972.UF70_1126) — abundance 24185AFDSI-PROTEOMICS-1853
UF70_0880 (45972.UF70_0880) — abundance 24126AFDSI-PROTEOMICS-1854
rpmD (45972.UF70_1953) — abundance 24064AFDSI-PROTEOMICS-1855
UF70_1518 (45972.UF70_1518) — abundance 22902AFDSI-PROTEOMICS-1856
rpmC (45972.UF70_1943) — abundance 20801AFDSI-PROTEOMICS-1857
CspA (45972.UF70_0981) — abundance 20198AFDSI-PROTEOMICS-1858
UF70_1619 (45972.UF70_1619) — abundance 18223AFDSI-PROTEOMICS-1859
UF70_2118 (45972.UF70_2118) — abundance 17970AFDSI-PROTEOMICS-1860
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Exploration of buffalo CVM Staphylococcus pasteuri proteins during estrus by LC-MSMS (PXD023616) ↗AFDSI-PROJREF-940
MetaboLights: Analysis of 3274 bacterial isolates by rapid evaporative ionisation mass spectrometry (REIMS) (View at source ↗)AFDSI-METABPROF-326
KEGG: KEGG genome-based metabolic profile (spas) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-431
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || Timelapse microfluidics bacteria (View on source archive ↗)AFDSI-CELL-7807
BioImage Archive: Spatial-Spectral Single-Molecule Microscopy Dataset (View on source archive ↗)AFDSI-CELL-7808
BioImage Archive: Simple imaging system for label-free identification of bacterial pathogens in resource-limited settings (View on source archive ↗)AFDSI-CELL-7900
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || congenic agr strains example image dataset (View on source archive ↗)AFDSI-CELL-7363
BioImage Archive: BAIwatch: Quantitative assessment of biomaterial-associated infection assays by automated image analysis (View on source archive ↗)AFDSI-CELL-7364
BioImage Archive: Systematic identification of bacterial factors driving Staphylococcus aureus intracellular lifestyle in non-professional phagocytes (View on source archive ↗)AFDSI-CELL-7365
BioImage Archive: Simple optical nanomotion method for single-bacterium viability and antibiotic response testing (View on source archive ↗)AFDSI-CELL-7366
BioImage Archive: Holotomographic datasets in OME-Zarr format for compression benchmarking of holotomographic data (View on source archive ↗)AFDSI-CELL-7367
BioImage Archive: Transmission electron microscopy of mast cell degranulation induced by Staphylococcus aureus delta-toxin (View on source archive ↗)AFDSI-CELL-7361
BioImage Archive: Image dataset: Testing the mechanical trigger model for Staphylococcus aureus cell-division control with population-level cell-cycle phase data (View on source archive ↗)AFDSI-CELL-7362
15 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6469
File: GCF_025558385.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19514There are more related species. Open the species tree to see them all.