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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 46126Also known as: Staphylococcus hyicus subsp. chromogenes
No local or indigenous names recorded yet.
Cosmopolitan
Occurrence records: Recorded mostly outside Africa. 12 of 768 GBIF records (2%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
64 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846615.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 104x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5359 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
pdxT — 186 aa
ribBA — 393 aa
pfkA — 323 aa
carB — 1057 aa
coaBC — 406 aa
rlmN — 364 aa
glmU — 455 aa
pyrG — 535 aa
eno — 434 aa
pgk — 396 aa
Origin: hub
64 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846675.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 123x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5360 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
65 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846705.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 132x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5362 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
70 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846725.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 85x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5363 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
72 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846755.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 74x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5364 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
72 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846935.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 119x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5366 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
69 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846995.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 137x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5367 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
70 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846975.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 87x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5368 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
70 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031847035.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 143x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5371 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
80 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_025558905.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Somalia:Somaliland
Sequencing: PacBio Sequel · Flye v. 2.6 · 482x coverage
Released: 2022-10-04 · Submitted by: University of Bern
publiccc0AFDSI-SEQ-6092 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: SO · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
80 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_025558865.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Somalia:Somaliland
Sequencing: PacBio Sequel · Flye v. 2.6 · 290x coverage
Released: 2022-10-04 · Submitted by: University of Bern
publiccc0AFDSI-SEQ-6093 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: SO · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
66 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846665.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 99x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5361 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
70 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031846785.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 119x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5365 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
Origin: hub
69 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_031847015.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: South Africa: Cape Town
Sequencing: Illumina NextSeq · SPAdes v. 3.15.5 · 180x coverage
Released: 2023-09-23 · Submitted by: Stellenbosch University
publiccc0AFDSI-SEQ-5369 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: ZA · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
AlphaFold DB proteome: UP000242008 ↗
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: TYLOSIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.5 ug.mL-1AFDSI-METABOLOMICS-2723
ChEMBL: TOBRAMYCIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 2.0 ug.mL-1AFDSI-METABOLOMICS-2711
ChEMBL: MEROPENEM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.0625 ug.mL-1AFDSI-METABOLOMICS-2713
ChEMBL: LINEZOLID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.0 ug.mL-1AFDSI-METABOLOMICS-2715
ChEMBL: TILDIPIROSIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 16.0 ug.mL-1AFDSI-METABOLOMICS-2717
ChEMBL: CHEMBL5185561 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-2719
ChEMBL: CHEMBL5172321 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.5 ug.mL-1AFDSI-METABOLOMICS-2721
ChEMBL: MEROPENEM (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.0625 ug.mL-1AFDSI-METABOLOMICS-2712
ChEMBL: LINEZOLID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.0 ug.mL-1
KEGG: KEGG genome-based metabolic profile (schr) (View at source ↗) — Genome-based pathway inference (KEGG) — reflects which metabolic pathways this species' annotated genes place it in, not experimentally measured metabolite presenceAFDSI-METABPROF-423
pLDDT confidence: 85.5
Auto-synced from AlphaFold DB AF-A0AAX0ZEE8-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20537-V2pLDDT confidence: 94.3
Auto-synced from AlphaFold DB AF-A0AAX0ZG68-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20473-V2pLDDT confidence: 90.9
Auto-synced from AlphaFold DB AF-A0AAX0ZI71-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20475-V2pLDDT confidence: 94.4
Auto-synced from AlphaFold DB AF-A0AAX0ZIL0-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20477-V2pLDDT confidence: 87.7
Auto-synced from AlphaFold DB AF-A0AAX0ZHV0-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-20479-V2BioImage Archive: Transmission electron microscopy of mast cell degranulation induced by Staphylococcus aureus delta-toxin (View on source archive ↗)AFDSI-CELL-7784
BioImage Archive: Image dataset: Testing the mechanical trigger model for Staphylococcus aureus cell-division control with population-level cell-cycle phase data (View on source archive ↗)AFDSI-CELL-7281
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || congenic agr strains example image dataset (View on source archive ↗)AFDSI-CELL-7282
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || Timelapse microfluidics bacteria (View on source archive ↗)AFDSI-CELL-7283
BioImage Archive: BAIwatch: Quantitative assessment of biomaterial-associated infection assays by automated image analysis (View on source archive ↗)AFDSI-CELL-7284
BioImage Archive: Systematic identification of bacterial factors driving Staphylococcus aureus intracellular lifestyle in non-professional phagocytes (View on source archive ↗)AFDSI-CELL-7285
BioImage Archive: Simple imaging system for label-free identification of bacterial pathogens in resource-limited settings (View on source archive ↗)AFDSI-CELL-7286
BioImage Archive: Simple optical nanomotion method for single-bacterium viability and antibiotic response testing (View on source archive ↗)AFDSI-CELL-7287
BioImage Archive: Holotomographic datasets in OME-Zarr format for compression benchmarking of holotomographic data (View on source archive ↗)AFDSI-CELL-7288
BioImage Archive: Spatial-Spectral Single-Molecule Microscopy Dataset (View on source archive ↗)AFDSI-CELL-7289
12 real GBIF-recorded occurrences across Africa — see this species on GBIF ↗.
This reflects real occurrence records submitted to GBIF, not a comprehensive range map — sampling effort varies significantly by country and region, so an absence here doesn't mean the species isn't present.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5371
File: GCF_031847035.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19815MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5369
File: GCF_031847015.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19814There are more related species. Open the species tree to see them all.
ChEMBL: TILDIPIROSIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 16.0 ug.mL-1AFDSI-METABOLOMICS-2716
ChEMBL: CHEMBL5185561 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-2718
ChEMBL: CHEMBL5172321 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.5 ug.mL-1AFDSI-METABOLOMICS-2720
ChEMBL: TYLOSIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.5 ug.mL-1AFDSI-METABOLOMICS-2722
ChEMBL: VANCOMYCIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-2724
ChEMBL: CHEMBL44949 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.0 ug.mL-1AFDSI-METABOLOMICS-2726
ChEMBL: CHEMBL5206160 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.125 ug.mL-1AFDSI-METABOLOMICS-2727
ChEMBL: VANCOMYCIN (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 8.0 ug.mL-1AFDSI-METABOLOMICS-2725
ChEMBL: CHEMBL44949 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 1.0 ug.mL-1AFDSI-METABOLOMICS-2728
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5367
File: GCF_031846995.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19813MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5368
File: GCF_031846975.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19812MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-5366
File: GCF_031846935.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-19810