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Benefit-sharing from DSI rests on the provider country's national framework. Where it requires bilateral benefit-sharing for DSI, those terms apply. Where it gives effect to the CBD multilateral mechanism, users of its publicly available DSI should share benefits through it: all users non-monetary benefits, as appropriate, and commercial users above set size thresholds also monetary contributions to the Cali Fund. Where it is silent on DSI, the position is not yet settled: check with the country's competent national authority, through the ABS service. Any terms agreed when the genetic resources were accessed still apply. Access and benefit-sharing questions are handled by the ABS service, not by the DataBank. Learn more →
taxon 1288No local or indigenous names recorded yet.
Not yet assessed
Occurrence records: Recorded mostly outside Africa. 23 of 528 GBIF records (4%) are from Africa (checked 10/12/2026). A hint from GBIF and the genomes on this Hub, not an assessment: GBIF includes zoo and travel records.
Species that share this one's nearest groups in NCBI Taxonomy. This is how they're classified, not a phylogeny. See it in the species tree.
Origin: hub
76 downloads
First synced: 10/11/2026 · Last updated: 10/12/2026
Source: NCBI GCF_040409905.1 · View at source ↗
Download annotation (GFF3) · Download CDS (FASTA) · Download proteins (FASTA)
Collection: Algeria: M'sila
Sequencing: Oxford Nanopore GridION · Trycycler; minimap2; medaka v. v0.5.3; v2.20; v1.5.0 · 323x coverage
Released: 2024-06-27 · Submitted by: Universiteit Gent
publiccc0AFDSI-SEQ-6476 Benefit-sharing under CBD Decision 16/2 and national frameworks →Country of origin: DZ · PIC: unknown · MAT: unknown
GoaT: no record for this species (not eukaryotic, or not yet sequenced)
Publicly accessible — no request needed.
lpdA — 468 aa
deoD — 236 aa
ilvE — 358 aa
sipB — 197 aa
dnaA — 455 aa
protein 16920 — 222 aa
nusG — 182 aa
gdh — 263 aa
mntH — 440 aa
ald — 371 aa
No AlphaFold DB proteome found for this species.
PaxDb — real per-protein abundance
ARD75432.1 (1288.AWC37_09965) — abundance 27654AFDSI-PROTEOMICS-2127
acpP (1288.AWC37_03660) — abundance 23962AFDSI-PROTEOMICS-2128
ARD75123.1 (1288.AWC37_08380) — abundance 22626AFDSI-PROTEOMICS-2129
rpmD (1288.AWC37_08495) — abundance 22082AFDSI-PROTEOMICS-2130
ARD74578.1 (1288.AWC37_05295) — abundance 21204AFDSI-PROTEOMICS-2131
ARD74706.1 (1288.AWC37_05995) — abundance 20404AFDSI-PROTEOMICS-2133
ARD75113.1 (1288.AWC37_08330) — abundance 18113AFDSI-PROTEOMICS-2134
ARD74347.1 (1288.AWC37_04095) — abundance 17145AFDSI-PROTEOMICS-2135
rpmG-2 (1288.AWC37_05650) — abundance 16974AFDSI-PROTEOMICS-2137
rpsU (1288.AWC37_05770) — abundance 15914AFDSI-PROTEOMICS-2139
PRIDE — project-level reference (metadata only; no per-protein identifications are available via PRIDE's public API)
Acid stress response of Staphylococcus xylosus elicits changes in the proteome and cellular membrane (PXD012823) ↗AFDSI-PROJREF-947
ChEMBL rows are compounds active against a protein target from this organism — not confirmed as compounds the species itself produces, unlike ANPDB's.
ChEMBL: CHEMBL4744444 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.12 ug.mL-1AFDSI-METABOLOMICS-2904
ChEMBL: LINEZOLID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.5 ug.mL-1AFDSI-METABOLOMICS-2906
ChEMBL: CHEMBL4744444 (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.12 ug.mL-1AFDSI-METABOLOMICS-2903
ChEMBL: LINEZOLID (View at source ↗) — Target organism (ChEMBL) — not confirmed as a compound this species produces; MIC 0.5 ug.mL-1AFDSI-METABOLOMICS-2905
pLDDT confidence: 96.4
Auto-synced from AlphaFold DB AF-A7KJJ3-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-19058-V2pLDDT confidence: 86.6
Auto-synced from AlphaFold DB AF-A0A1W7M503-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-19074-V2pLDDT confidence: 87.1
Auto-synced from AlphaFold DB AF-A0SJA1-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-19066-V2pLDDT confidence: 96.3
Auto-synced from AlphaFold DB AF-A7KJJ0-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-19076-V2pLDDT confidence: 95.5
Auto-synced from AlphaFold DB AF-A0SJA3-F1 · View at source ↗
publiccc_byAFDSI-STRUCT-19062-V2BioImage Archive: Transmission electron microscopy of mast cell degranulation induced by Staphylococcus aureus delta-toxin (View on source archive ↗)AFDSI-CELL-7464
BioImage Archive: Image dataset: Testing the mechanical trigger model for Staphylococcus aureus cell-division control with population-level cell-cycle phase data (View on source archive ↗)AFDSI-CELL-7465
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || congenic agr strains example image dataset (View on source archive ↗)AFDSI-CELL-7466
BioImage Archive: Single-cell approach dissecting agr quorum sensing dynamics in Staphylococcus aureus || Timelapse microfluidics bacteria (View on source archive ↗)AFDSI-CELL-7467
BioImage Archive: BAIwatch: Quantitative assessment of biomaterial-associated infection assays by automated image analysis (View on source archive ↗)AFDSI-CELL-7468
BioImage Archive: Systematic identification of bacterial factors driving Staphylococcus aureus intracellular lifestyle in non-professional phagocytes (View on source archive ↗)AFDSI-CELL-7469
BioImage Archive: Simple optical nanomotion method for single-bacterium viability and antibiotic response testing (View on source archive ↗)AFDSI-CELL-7470
BioImage Archive: Simple imaging system for label-free identification of bacterial pathogens in resource-limited settings (View on source archive ↗)AFDSI-CELL-7590
BioImage Archive: Holotomographic datasets in OME-Zarr format for compression benchmarking of holotomographic data (View on source archive ↗)AFDSI-CELL-7592
BioImage Archive: Spatial-Spectral Single-Molecule Microscopy Dataset (View on source archive ↗)AFDSI-CELL-7593
No African occurrence records found for this species in GBIF — please confirm this is within this platform's African-origin/endemic/indigenous scope. This is a non-blocking, informational check only: GBIF coverage is real but imperfect, so a genuinely African species can still show no records here.
A node's own derived bioinformatics-analysis output (e.g. an SSR/microsatellite discovery archive) run against this species' own genome data — see the Derived Analysis page for the full catalog.
MegaSSR — ssr_discovery
derived from genome record AFDSI-SEQ-6476
File: GCF_040409905.1_megassr_results.tar.gz
Tool version: MegaSSR v3.0.0 (UM6P patched)
Native — captured by Northern-MA-UM6P-8787752738 · View at source ↗
cc_by public Country of origin not recorded: see how benefit-sharing works →
AFDSI-ANALYSIS-20053There are more related species. Open the species tree to see them all.